Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 124 of 187
Found at i:36951142 original size:23 final size:23
Alignment explanation
Indices: 36951111--36951168 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
36951101 CCAATAGGGG
*
36951111 ACTTTTGTTACTAGTACTCTAGT
1 ACTTATGTTACTAGTACTCTAGT
* * * *
36951134 ACTTCTGTTATTAGTACTTTGGT
1 ACTTATGTTACTAGTACTCTAGT
36951157 ACTTATGTTACT
1 ACTTATGTTACT
36951169 GGCACTACGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.50
Consensus pattern (23 bp):
ACTTATGTTACTAGTACTCTAGT
Found at i:36952489 original size:32 final size:32
Alignment explanation
Indices: 36952448--36952513 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
36952438 ACAATAAATG
*
36952448 TTTGGATAATTACCCTTGAATTTTTGTAGACA
1 TTTGGATAATTACCCTTGAACTTTTGTAGACA
36952480 TTTGGATAATTACCCTTGAACTTTTGTAGACA
1 TTTGGATAATTACCCTTGAACTTTTGTAGACA
36952512 TT
1 TT
36952514 AATTTATAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (32 bp):
TTTGGATAATTACCCTTGAACTTTTGTAGACA
Found at i:36955218 original size:12 final size:13
Alignment explanation
Indices: 36955196--36955224 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
36955186 ATGCAAAATT
36955196 AGAAAGAAAAGAA
1 AGAAAGAAAAGAA
36955209 AGAAAG-AAAGAA
1 AGAAAGAAAAGAA
36955221 AGAA
1 AGAA
36955225 TTGAATGGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AGAAAGAAAAGAA
Found at i:36956571 original size:42 final size:42
Alignment explanation
Indices: 36956509--36956653 Score: 202
Period size: 42 Copynumber: 3.5 Consensus size: 42
36956499 GTGTAACACA
* *
36956509 CCCGTGTGCCAGGCTGTGTAACTCTCTGAGTTGCCCCACATG
1 CCCGTGTGCTAGGCCGTGTAACTCTCTGAGTTGCCCCACATG
*
36956551 CCCGTAG-GCTAGGTCGTGTAACTCTCTGAGTTGCCCCACATG
1 CCCGT-GTGCTAGGCCGTGTAACTCTCTGAGTTGCCCCACATG
* * *
36956593 CTCGTGTGCTAGGCCGTATAACTCTCTTAGTTGCCCCACATG
1 CCCGTGTGCTAGGCCGTGTAACTCTCTGAGTTGCCCCACATG
* *
36956635 CCCATGTGCTAAGCCGTGT
1 CCCGTGTGCTAGGCCGTGT
36956654 GTTAGGCCGT
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
41 1 0.01
42 88 0.98
43 1 0.01
ACGTcount: A:0.16, C:0.32, G:0.25, T:0.28
Consensus pattern (42 bp):
CCCGTGTGCTAGGCCGTGTAACTCTCTGAGTTGCCCCACATG
Found at i:36958289 original size:60 final size:60
Alignment explanation
Indices: 36958191--36958304 Score: 210
Period size: 60 Copynumber: 1.9 Consensus size: 60
36958181 GAAAGGACTG
*
36958191 TTCATAATAGACTTCGAGAACAAAGAAATATGGCTCTACCAAGGAACAATGCAGGTACTA
1 TTCAGAATAGACTTCGAGAACAAAGAAATATGGCTCTACCAAGGAACAATGCAGGTACTA
*
36958251 TTCAGAATAGACTTCGAGAACAATGAAATATGGCTCTACCAAGGAACAATGCAG
1 TTCAGAATAGACTTCGAGAACAAAGAAATATGGCTCTACCAAGGAACAATGCAG
36958305 CCATACCCCC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.21
Consensus pattern (60 bp):
TTCAGAATAGACTTCGAGAACAAAGAAATATGGCTCTACCAAGGAACAATGCAGGTACTA
Found at i:36964669 original size:18 final size:18
Alignment explanation
Indices: 36964648--36964695 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
36964638 AAGAAGTTGA
36964648 TGTTGCAGAAGCA-GAAGT
1 TGTTGCAGAAG-AGGAAGT
*
36964666 TGTTGTAGAAGAGGAAGT
1 TGTTGCAGAAGAGGAAGT
*
36964684 TGTTGCTGAAGA
1 TGTTGCAGAAGA
36964696 AGAGAAAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 1 0.04
18 25 0.96
ACGTcount: A:0.31, C:0.06, G:0.35, T:0.27
Consensus pattern (18 bp):
TGTTGCAGAAGAGGAAGT
Found at i:36964697 original size:39 final size:36
Alignment explanation
Indices: 36964628--36964706 Score: 88
Period size: 39 Copynumber: 2.1 Consensus size: 36
36964618 AGAAGACACT
* *
36964628 GTTGTTGAGAAAGAAGTTGATGTTGCAGAAGCAG-AA
1 GTTGTTGAGAAAGAAGTTGATGCTGAAGAAG-AGAAA
*
36964664 GTTGTTGTAGAAGAGGAAGTTGTTGCTGAAGAAGAGAAA
1 GTTGTTG-AGAA-A-GAAGTTGATGCTGAAGAAGAGAAA
36964703 GTTG
1 GTTG
36964707 CTAAAAATGA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
36 7 0.19
37 4 0.11
38 3 0.08
39 22 0.61
ACGTcount: A:0.34, C:0.04, G:0.35, T:0.27
Consensus pattern (36 bp):
GTTGTTGAGAAAGAAGTTGATGCTGAAGAAGAGAAA
Found at i:36965166 original size:17 final size:17
Alignment explanation
Indices: 36965144--36965177 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
36965134 GATAAGTATA
*
36965144 CATTGTCATTGCATTTT
1 CATTGTCATTACATTTT
36965161 CATTGTCATTACATTTT
1 CATTGTCATTACATTTT
36965178 AGTGTTAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.18, G:0.09, T:0.53
Consensus pattern (17 bp):
CATTGTCATTACATTTT
Found at i:36968058 original size:20 final size:20
Alignment explanation
Indices: 36967996--36968060 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
36967986 AAATGCGTTT
* *
36967996 AGGGGTACTGAAGTACACAC
1 AGGGGTGCTGAAGTACAAAC
* * *
36968016 A-GGG-GCATGTATGTGCAATC
1 AGGGGTGC-TG-AAGTACAAAC
36968036 AGGGGTGCTGAAGTACAAAC
1 AGGGGTGCTGAAGTACAAAC
36968056 AGGGG
1 AGGGG
36968061 CACGTCTATG
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
18 1 0.03
19 5 0.15
20 20 0.61
21 5 0.15
22 2 0.06
ACGTcount: A:0.31, C:0.15, G:0.37, T:0.17
Consensus pattern (20 bp):
AGGGGTGCTGAAGTACAAAC
Found at i:36968080 original size:40 final size:40
Alignment explanation
Indices: 36967995--36968146 Score: 138
Period size: 40 Copynumber: 3.9 Consensus size: 40
36967985 TAAATGCGTT
* *
36967995 TAGGGGTACTGAAGTACACACAGGGGCATG-TATGTGC-AA
1 TAGGGGTACTGAAGTACAAACAGGGGCACGTTATGT-CAAA
*
36968034 TCAGGGGTGCTGAAGTACAAACAGGGGCACGTCTATGT-AAA
1 T-AGGGGTACTGAAGTACAAACAGGGGCACGT-TATGTCAAA
* * * *
36968075 TAGGGGT-C-AAAGTACAAAAAAGGGCACG-TATGTCCAAT
1 TAGGGGTACTGAAGTACAAACAGGGGCACGTTATGT-CAAA
* *
36968113 TAGGGGTACCGAAGTACAAATAGGGGCAC-TTATG
1 TAGGGGTACTGAAGTACAAACAGGGGCACGTTATG
36968147 AGCAATCATT
Statistics
Matches: 94, Mismatches: 10, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
36 5 0.05
38 26 0.28
39 3 0.03
40 52 0.55
41 3 0.03
42 5 0.05
ACGTcount: A:0.34, C:0.16, G:0.31, T:0.20
Consensus pattern (40 bp):
TAGGGGTACTGAAGTACAAACAGGGGCACGTTATGTCAAA
Found at i:36973390 original size:42 final size:42
Alignment explanation
Indices: 36973331--36973416 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
36973321 TTTAGTATAA
36973331 AAGAAATTTGAATTAATATGATCACTCGATGTCATCGTGCTC
1 AAGAAATTTGAATTAATATGATCACTCGATGTCATCGTGCTC
36973373 AAGAAATTTGAATTAATATGATCACTCGATGTCATCGTGCTC
1 AAGAAATTTGAATTAATATGATCACTCGATGTCATCGTGCTC
36973415 AA
1 AA
36973417 AGTGCCCCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (42 bp):
AAGAAATTTGAATTAATATGATCACTCGATGTCATCGTGCTC
Found at i:36979169 original size:20 final size:20
Alignment explanation
Indices: 36979137--36979284 Score: 72
Period size: 20 Copynumber: 7.5 Consensus size: 20
36979127 GGGTACTGAA
*
36979137 GTACAAACAGGGGCACGTAT
1 GTACAATCAGGGGCACGTAT
* * *
36979157 GTGCAATCAGGGGTAC-TGAA
1 GTACAATCAGGGGCACGT-AT
* *
36979177 GTACAAAT-TGGGGCACATAT
1 GTAC-AATCAGGGGCACGTAT
* * * * *
36979197 GTGCAAACAGGGGTA-TTAAA
1 GTACAATCAGGGGCACGT-AT
*
36979217 GTACAAACAGGGGCACGTAT
1 GTACAATCAGGGGCACGTAT
* *
36979237 GTACAATCA-GGGTATCG-AA
1 GTACAATCAGGGGCA-CGTAT
* *
36979256 GTACAAACAAGGGCACGTAT
1 GTACAATCAGGGGCACGTAT
*
36979276 GTGCAATCA
1 GTACAATCA
36979285 TTCAATAATT
Statistics
Matches: 93, Mismatches: 26, Indels: 18
0.68 0.19 0.13
Matches are distributed among these distances:
19 19 0.20
20 69 0.74
21 5 0.05
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (20 bp):
GTACAATCAGGGGCACGTAT
Found at i:36979261 original size:39 final size:40
Alignment explanation
Indices: 36979127--36979284 Score: 221
Period size: 40 Copynumber: 4.0 Consensus size: 40
36979117 ATGCGTTCAA
36979127 GGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATCAG
1 GGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATCAG
** * *
36979167 GGGTACTGAAGTACAAATTGGGGCACATATGTGCAAACAG
1 GGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATCAG
* * *
36979207 GGGTATTAAAGTACAAACAGGGGCACGTATGTACAATCA-
1 GGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATCAG
*
36979246 GGGTA-TCGAAGTACAAACAAGGGCACGTATGTGCAATCA
1 GGGTACT-GAAGTACAAACAGGGGCACGTATGTGCAATCA
36979285 TTCAATAATT
Statistics
Matches: 103, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
38 1 0.01
39 34 0.33
40 68 0.66
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (40 bp):
GGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATCAG
Found at i:36981521 original size:29 final size:29
Alignment explanation
Indices: 36981496--36981648 Score: 157
Period size: 29 Copynumber: 5.2 Consensus size: 29
36981486 ACGATGGTTG
*
36981496 TCACCATCCCTTTTCATATTTGATGGTCGA
1 TCACCATCCCTTTTCATAGTTGATGGTC-A
* * *
36981526 -AACCATCCCTTTTCATTAATCGATGGTCA
1 TCACCATCCCTTTTCA-TAGTTGATGGTCA
* * *
36981555 TCACCATCCCTTTTCATAGTCGATAGTAA
1 TCACCATCCCTTTTCATAGTTGATGGTCA
** *
36981584 AAACTATCCCTTTTCATA-TATGATGGTCA
1 TCACCATCCCTTTTCATAGT-TGATGGTCA
* *
36981613 TCACCATCCGTTTTCATAGTTGATGGTCG
1 TCACCATCCCTTTTCATAGTTGATGGTCA
36981642 TCACCAT
1 TCACCAT
36981649 TGTAACACCC
Statistics
Matches: 101, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
28 1 0.01
29 75 0.74
30 25 0.25
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.37
Consensus pattern (29 bp):
TCACCATCCCTTTTCATAGTTGATGGTCA
Found at i:36981593 original size:59 final size:59
Alignment explanation
Indices: 36981487--36981632 Score: 188
Period size: 59 Copynumber: 2.5 Consensus size: 59
36981477 AGTGTGCTAA
** * * * **
36981487 CGATGGTTGTCACCATCCCTTTTCATATTTGATGGTCGAAACCATCCCTTTTCAT-TAAT
1 CGATGGTCATCACCATCCCTTTTCATAGTCGATAGTAAAAACCATCCCTTTTCATAT-AT
*
36981546 CGATGGTCATCACCATCCCTTTTCATAGTCGATAGTAAAAACTATCCCTTTTCATATAT
1 CGATGGTCATCACCATCCCTTTTCATAGTCGATAGTAAAAACCATCCCTTTTCATATAT
*
36981605 -GATGGTCATCACCATCCGTTTTCATAGT
1 CGATGGTCATCACCATCCCTTTTCATAGT
36981633 TGATGGTCGT
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
58 27 0.35
59 49 0.64
60 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (59 bp):
CGATGGTCATCACCATCCCTTTTCATAGTCGATAGTAAAAACCATCCCTTTTCATATAT
Found at i:36983105 original size:40 final size:40
Alignment explanation
Indices: 36983060--36983658 Score: 903
Period size: 40 Copynumber: 15.0 Consensus size: 40
36983050 CAAGCTCAAT
* * *
36983060 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* * * *
36983100 TGCCTTCGGGTCTTAGCCCGGAAAAAATC-ACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGG-ATATATCAACTCGCACAAA
* ** * *
36983140 TGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
36983180 TGCCTTCGGGCCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
36983220 TGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
36983260 TGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
36983300 TGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
36983340 TGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
36983380 TGCCTTCGGGCCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
36983420 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
36983460 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
36983500 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
36983540 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
36983580 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
36983620 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAA
36983659 GTAAGAAACT
Statistics
Matches: 527, Mismatches: 30, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
39 3 0.01
40 521 0.99
41 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
Found at i:36984779 original size:29 final size:29
Alignment explanation
Indices: 36984737--36984818 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
36984727 TGTCACAACC
*
36984737 ATCCCTTTTCATAGTCGATGGTCGAAACT
1 ATCCCTTTTCATAGTCGATAGTCGAAACT
*
36984766 ATCCCTTTTCATAGTTGATAGTCGAAACT
1 ATCCCTTTTCATAGTCGATAGTCGAAACT
*
36984795 ATCCCTTTTCATAGTGGATAGTCG
1 ATCCCTTTTCATAGTCGATAGTCG
36984819 TCGATACGTC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (29 bp):
ATCCCTTTTCATAGTCGATAGTCGAAACT
Found at i:36987922 original size:13 final size:13
Alignment explanation
Indices: 36987904--36987938 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
36987894 ACACGACTGT
36987904 ATGGCTGAGGGAC
1 ATGGCTGAGGGAC
36987917 ATGGCT-ATGGGAC
1 ATGGCTGA-GGGAC
36987930 ATGGCTGAG
1 ATGGCTGAG
36987939 TGGCTAAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.05
13 18 0.90
14 1 0.05
ACGTcount: A:0.23, C:0.14, G:0.43, T:0.20
Consensus pattern (13 bp):
ATGGCTGAGGGAC
Found at i:36989285 original size:26 final size:26
Alignment explanation
Indices: 36989255--36989319 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
36989245 ACAAAACATC
* *
36989255 GGCTCAAAGCCTGCTAAATATTCATT
1 GGCTCAAAGCCTGCTAAATATACACT
*
36989281 GGCTCAAAGCATGCTAAATATACACT
1 GGCTCAAAGCCTGCTAAATATACACT
* *
36989307 GACACAAAGCCTG
1 GGCTCAAAGCCTG
36989320 ATACACTCTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (26 bp):
GGCTCAAAGCCTGCTAAATATACACT
Found at i:36991094 original size:26 final size:25
Alignment explanation
Indices: 36991052--36991100 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
36991042 AATGCATCTT
* *
36991052 TTTTAAAAACATTTTGGGCTTCTCA
1 TTTTAAAAACATCTTGGGATTCTCA
*
36991077 TTTTAAAAATTATCTTGGGATTCT
1 TTTTAAAAA-CATCTTGGGATTCT
36991101 TGGGTTGTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 9 0.45
26 11 0.55
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (25 bp):
TTTTAAAAACATCTTGGGATTCTCA
Found at i:36992417 original size:18 final size:19
Alignment explanation
Indices: 36992394--36992432 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
36992384 CTAAATTTCC
*
36992394 AACCTTAAACTC-TAAAAA
1 AACCTTAAACCCTTAAAAA
*
36992412 AACCTTGAACCCTTAAAAA
1 AACCTTAAACCCTTAAAAA
36992431 AA
1 AA
36992433 GGTCGAGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.54, C:0.23, G:0.03, T:0.21
Consensus pattern (19 bp):
AACCTTAAACCCTTAAAAA
Found at i:36995363 original size:18 final size:17
Alignment explanation
Indices: 36995335--36995383 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
36995325 TAAATTTCTT
*
36995335 TATATACTTTTTGAAATA
1 TATATAATTTTTGAAA-A
* *
36995353 TTTATAATTTTTTAAAA
1 TATATAATTTTTGAAAA
*
36995370 TATATAAATTTTGA
1 TATATAATTTTTGA
36995384 TTTTTATAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 12 0.48
18 13 0.52
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (17 bp):
TATATAATTTTTGAAAA
Found at i:36995370 original size:19 final size:19
Alignment explanation
Indices: 36995319--36995381 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
36995309 AAAAATTTTC
* *
36995319 ATTTTTTAAATTTCTTTATA
1 ATTTTTTAAA-ATATTTATA
* *
36995339 TACTTTTTGAAATATTTATA
1 -ATTTTTTAAAATATTTATA
*
36995359 ATTTTTTAAAATATATA-A
1 ATTTTTTAAAATATTTATA
36995377 ATTTT
1 ATTTT
36995382 GATTTTTATA
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
18 6 0.17
19 14 0.40
20 7 0.20
21 8 0.23
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.59
Consensus pattern (19 bp):
ATTTTTTAAAATATTTATA
Found at i:36995405 original size:19 final size:19
Alignment explanation
Indices: 36995342--36995448 Score: 74
Period size: 19 Copynumber: 5.3 Consensus size: 19
36995332 CTTTATATAC
* *
36995342 TTTTTGAAA-TATTTATAA
1 TTTTTAAAATTATTTTTAA
*
36995360 TTTTTTAAAATATATAAATTTTGA
1 -TTTTTAAAAT-TAT---TTTTAA
*
36995384 TTTTTATAATTATTTTTAA
1 TTTTTAAAATTATTTTTAA
*
36995403 -TTTTAAACATTATTTTGAA
1 TTTTTAAA-ATTATTTTTAA
*
36995422 TTTTAGAAAATTATTTTGTAA
1 TTTT-TAAAATTATTTT-TAA
36995443 TTTTTA
1 TTTTTA
36995449 TTGAGAGAGA
Statistics
Matches: 69, Mismatches: 10, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
18 6 0.09
19 23 0.33
20 12 0.17
21 12 0.17
22 3 0.04
23 9 0.13
24 4 0.06
ACGTcount: A:0.36, C:0.01, G:0.05, T:0.58
Consensus pattern (19 bp):
TTTTTAAAATTATTTTTAA
Found at i:36995436 original size:20 final size:19
Alignment explanation
Indices: 36995377--36995446 Score: 79
Period size: 19 Copynumber: 3.6 Consensus size: 19
36995367 AAATATATAA
* *
36995377 ATTTTG-ATTTTTATAATT
1 ATTTTGAATTTTAAAAATT
* *
36995395 ATTTTTAATTTTAAACATT
1 ATTTTGAATTTTAAAAATT
36995414 ATTTTGAATTTTAGAAAATT
1 ATTTTGAATTTTA-AAAATT
36995434 ATTTTGTAATTTT
1 ATTTTG-AATTTT
36995447 TATTGAGAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
18 5 0.12
19 21 0.49
20 11 0.26
21 6 0.14
ACGTcount: A:0.33, C:0.01, G:0.06, T:0.60
Consensus pattern (19 bp):
ATTTTGAATTTTAAAAATT
Found at i:36997569 original size:23 final size:23
Alignment explanation
Indices: 36997539--36997596 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
36997529 GCAATAGGAG
*
36997539 ACTTTTGTTACTAGTACTCTGGT
1 ACTTTTGTTACTAGTACTCTAGT
* *
36997562 ACTTTTGTTATTAGTACTTTAGT
1 ACTTTTGTTACTAGTACTCTAGT
*
36997585 ACTTATGTTACT
1 ACTTTTGTTACT
36997597 GGCACTTCAG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.52
Consensus pattern (23 bp):
ACTTTTGTTACTAGTACTCTAGT
Found at i:37014630 original size:138 final size:138
Alignment explanation
Indices: 37014373--37014634 Score: 418
Period size: 138 Copynumber: 1.9 Consensus size: 138
37014363 TTTATTAAAT
37014373 ATTTTGATGTTTGGCTAGTTAATTAAAGAAAATGACTAAATCGTAAAAACTGCAAAAGTTAATCG
1 ATTTTGATGTTTGGCTAGTTAATTAAAGAAAATGACTAAATCGTAAAAACTGCAAAAGTTAATCG
* ** * *
37014438 CTATGGGCTAATACGAGTTAATGTTGAAAATATGACTAAATTCATAAAGTGTCAAAGTTAATTTG
66 CTATAGGCTAATAAAAGTTAATGTTGAAAATATGACTAAATTCAAAAAGGGTCAAAGTTAATTTG
37014503 GTTTGTTA
131 GTTTGTTA
* *
37014511 ATTTTGATGTTTGGCTAGTTAATTAAAGAAAATGACTAAATCGTAAAAATTGTAAAAGTTAATCG
1 ATTTTGATGTTTGGCTAGTTAATTAAAGAAAATGACTAAATCGTAAAAACTGCAAAAGTTAATCG
* * *
37014576 CTATAGGCTAATAAAAGTTAATTTTGAAAAT-TAGACTAATTTGAAAAAGGGTCAAAGTT
66 CTATAGGCTAATAAAAGTTAATGTTGAAAATAT-GACTAAATTCAAAAAGGGTCAAAGTT
37014635 GTGAGTTTTT
Statistics
Matches: 113, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
137 1 0.01
138 112 0.99
ACGTcount: A:0.40, C:0.08, G:0.18, T:0.34
Consensus pattern (138 bp):
ATTTTGATGTTTGGCTAGTTAATTAAAGAAAATGACTAAATCGTAAAAACTGCAAAAGTTAATCG
CTATAGGCTAATAAAAGTTAATGTTGAAAATATGACTAAATTCAAAAAGGGTCAAAGTTAATTTG
GTTTGTTA
Found at i:37023769 original size:14 final size:14
Alignment explanation
Indices: 37023752--37023780 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37023742 ATTGAATGAT
37023752 ATTGATTGATACCA
1 ATTGATTGATACCA
37023766 ATTGATTGATACCA
1 ATTGATTGATACCA
37023780 A
1 A
37023781 CACCATGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (14 bp):
ATTGATTGATACCA
Found at i:37025981 original size:19 final size:19
Alignment explanation
Indices: 37025957--37026003 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
37025947 AAATACTTAT
37025957 AATTTACATAACCAAAACC
1 AATTTACATAACCAAAACC
* *
37025976 AATTTACATAACCGAAACT
1 AATTTACATAACCAAAACC
*
37025995 TATTTACAT
1 AATTTACAT
37026004 GCCACTTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (19 bp):
AATTTACATAACCAAAACC
Found at i:37027964 original size:26 final size:26
Alignment explanation
Indices: 37027898--37027964 Score: 89
Period size: 26 Copynumber: 2.6 Consensus size: 26
37027888 GATCCCGACC
* * **
37027898 CACAGCTTGTGTGAACAGGCTCATTT
1 CACAGCTCGTGTGAGCAAACTCATTT
*
37027924 CAAAGCTCGTGTGAGCAAACTCATTT
1 CACAGCTCGTGTGAGCAAACTCATTT
37027950 CACAGCTCGTGTGAG
1 CACAGCTCGTGTGAG
37027965 GAAAAATGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAAACTCATTT
Found at i:37029808 original size:26 final size:26
Alignment explanation
Indices: 37029753--37029808 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
37029743 AATTGACTTG
* * * *
37029753 AAGCCTGCTAAATATACACGATCTCG
1 AAGCATGCTAAATATAAACGATCACA
37029779 AAGCATGCTAAATATAAACTGA-CACA
1 AAGCATGCTAAATATAAAC-GATCACA
37029805 AAGC
1 AAGC
37029809 GTGATACACC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.43, C:0.23, G:0.14, T:0.20
Consensus pattern (26 bp):
AAGCATGCTAAATATAAACGATCACA
Found at i:37032093 original size:49 final size:49
Alignment explanation
Indices: 37032031--37032153 Score: 124
Period size: 49 Copynumber: 2.5 Consensus size: 49
37032021 TCTAGTTCAT
* * * * *
37032031 GTGGTTATATGGTCATGGGTTGAAGTATAAGTA-GGGGTCCTAGTTGACG
1 GTGGTTATGTGGTCATGAGTTGAAGTATAAATATGGAG-CCCAGTTGACG
* * * *
37032080 GTGGTTATGTGGTCACGTGTTGGAGTATAAATATGGAGCCCAGTTGATG
1 GTGGTTATGTGGTCATGAGTTGAAGTATAAATATGGAGCCCAGTTGACG
* *
37032129 GTGG-TATGTAGTCATGAGTTCAAGT
1 GTGGTTATGTGGTCATGAGTTGAAGT
37032154 TTCATGCTAC
Statistics
Matches: 60, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
48 16 0.27
49 41 0.68
50 3 0.05
ACGTcount: A:0.23, C:0.09, G:0.35, T:0.33
Consensus pattern (49 bp):
GTGGTTATGTGGTCATGAGTTGAAGTATAAATATGGAGCCCAGTTGACG
Found at i:37032903 original size:26 final size:26
Alignment explanation
Indices: 37032874--37032923 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
37032864 GAAATATGTG
37032874 GGTCTCCAAGAACTATTGCATCACTA
1 GGTCTCCAAGAACTATTGCATCACTA
37032900 GGTCTCCAAGAACTATTGCATCAC
1 GGTCTCCAAGAACTATTGCATCAC
37032924 CGTTAACTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
GGTCTCCAAGAACTATTGCATCACTA
Found at i:37038655 original size:50 final size:50
Alignment explanation
Indices: 37038589--37038734 Score: 166
Period size: 50 Copynumber: 2.9 Consensus size: 50
37038579 AATAATAACA
* * ** *
37038589 TGCCAAAGCCATGTCCCTGACATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* * * *** *
37038639 TGCCCATGCCATGTCCCAGACATTGTCTTATGGGGGACCTCTCATCTAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* *
37038689 TGCCAACGCCATGTCCCAGACATGGTCTTCCATGAGACCTCTCATA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
37038735 ACCTCAATAA
Statistics
Matches: 76, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
50 76 1.00
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
Found at i:37043195 original size:25 final size:25
Alignment explanation
Indices: 37043161--37043210 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
37043151 GTTCATAATG
37043161 ATAACTTAACCAAATTAATCCTAAC
1 ATAACTTAACCAAATTAATCCTAAC
37043186 ATAACTTAACCAAATTAATCCTAAC
1 ATAACTTAACCAAATTAATCCTAAC
37043211 CAATCCCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (25 bp):
ATAACTTAACCAAATTAATCCTAAC
Found at i:37043212 original size:15 final size:15
Alignment explanation
Indices: 37043167--37043213 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
37043157 AATGATAACT
37043167 TAACCAAATTAATCC
1 TAACCAAATTAATCC
*
37043182 TAA-C--A-TAA-CT
1 TAACCAAATTAATCC
37043192 TAACCAAATTAATCC
1 TAACCAAATTAATCC
37043207 TAACCAA
1 TAACCAA
37043214 TCCCTATGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
10 4 0.16
11 4 0.16
12 1 0.04
13 1 0.04
14 4 0.16
15 11 0.44
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (15 bp):
TAACCAAATTAATCC
Found at i:37055604 original size:23 final size:23
Alignment explanation
Indices: 37055575--37055696 Score: 127
Period size: 23 Copynumber: 5.3 Consensus size: 23
37055565 ATAAGTGCCA
37055575 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * * *
37055598 CACTGATATGTGGTCGTAGCTAG
1 CACTGATATGTAGCCGAAGCTAC
* *
37055621 CACTGAAATGTAGCCGAAGTTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
37055644 AACTAATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * **
37055667 CACTTAAACATAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
37055690 CACTGAT
1 CACTGAT
37055697 CAATAACACT
Statistics
Matches: 76, Mismatches: 23, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 76 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:37055653 original size:46 final size:46
Alignment explanation
Indices: 37055575--37055689 Score: 140
Period size: 46 Copynumber: 2.5 Consensus size: 46
37055565 ATAAGTGCCA
* * * * * *
37055575 CACTGATATGTAGCCGAAGCTACCACTGATATGTGGTCGTAGCTAG
1 CACTGAAATGTAGCCGAAGCTACAACTAATATGTAGCCGTAGCTAC
*
37055621 CACTGAAATGTAGCCGAAGTTACAACTAATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACAACTAATATGTAGCCGTAGCTAC
* **
37055667 CACTTAAACATAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
37055690 CACTGATCAA
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 58 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.23
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACAACTAATATGTAGCCGTAGCTAC
Found at i:37063043 original size:30 final size:31
Alignment explanation
Indices: 37063009--37063113 Score: 110
Period size: 30 Copynumber: 3.5 Consensus size: 31
37062999 AGAATCAGTC
** * *
37063009 TGGGCCTA-AGCCTTATACAATAGCAGTGTG
1 TGGGCCTATAGCCCAATACAATAACAGAGTG
*
37063039 TGGGCC-ATAGCCCAATACAGTAACAGAGTG
1 TGGGCCTATAGCCCAATACAATAACAGAGTG
* * *
37063069 TGGGCCT-TAGTCCAATATAGTAACAGAGTG
1 TGGGCCTATAGCCCAATACAATAACAGAGTG
37063099 TGGGCCT-TAGCCCAA
1 TGGGCCTATAGCCCAA
37063114 AATAGTAATC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
29 1 0.02
30 64 0.98
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.23
Consensus pattern (31 bp):
TGGGCCTATAGCCCAATACAATAACAGAGTG
Found at i:37063119 original size:30 final size:30
Alignment explanation
Indices: 37063036--37063121 Score: 136
Period size: 30 Copynumber: 2.9 Consensus size: 30
37063026 CAATAGCAGT
* *
37063036 GTGTGGGCCATAGCCCAATACAGTAACAGA
1 GTGTGGGCCTTAGCCCAATATAGTAACAGA
*
37063066 GTGTGGGCCTTAGTCCAATATAGTAACAGA
1 GTGTGGGCCTTAGCCCAATATAGTAACAGA
*
37063096 GTGTGGGCCTTAGCCCAAAATAGTAA
1 GTGTGGGCCTTAGCCCAATATAGTAA
37063122 TCACTACAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (30 bp):
GTGTGGGCCTTAGCCCAATATAGTAACAGA
Found at i:37063278 original size:52 final size:52
Alignment explanation
Indices: 37063198--37063299 Score: 150
Period size: 52 Copynumber: 2.0 Consensus size: 52
37063188 ACCAATATCA
* *
37063198 CAGCAAAGCTGCCAATATCAGTAACGCAGCAAAGCTACTAGTAATAGTATAG
1 CAGCAAAGCTGCCAATATCAGTAACGCAGCAAAGCTACCAGTAACAGTATAG
* * * *
37063250 CAGCAAAGCTTCCAGTATCAGTATCGCAGCAAAGCTGCCAGTAACAGTAT
1 CAGCAAAGCTGCCAATATCAGTAACGCAGCAAAGCTACCAGTAACAGTAT
37063300 TTGTGGCAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.20
Consensus pattern (52 bp):
CAGCAAAGCTGCCAATATCAGTAACGCAGCAAAGCTACCAGTAACAGTATAG
Found at i:37063299 original size:26 final size:26
Alignment explanation
Indices: 37063193--37063299 Score: 124
Period size: 26 Copynumber: 4.1 Consensus size: 26
37063183 AACACACCAA
* * *
37063193 TATCACAGCAAAGCTGCCAATATCAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
* * * *
37063219 TAACGCAGCAAAGCTACTAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
* * *
37063245 TATAGCAGCAAAGCTTCCAGTATCAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
37063271 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
37063297 TAT
1 TAT
37063300 TTGTGGCAAA
Statistics
Matches: 65, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 65 1.00
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAACAG
Found at i:37063646 original size:80 final size:81
Alignment explanation
Indices: 37063508--37063663 Score: 208
Period size: 80 Copynumber: 1.9 Consensus size: 81
37063498 TACCTCTCGG
* * *
37063508 GGGTATTTCGATAATTTTAACCTTCGAGGGTATTTCAGAAACTCTACCTTTCGAGGGTATTTTGA
1 GGGTATTTCGATAATTTTAACCTTCGAAGATATTTCAGAAACTCTACCCTTCGAGGGTATTTTGA
37063573 TAATTTGACCCTTCGA
66 TAATTTGACCCTTCGA
* * * *
37063589 GGGT-TTTCGATAATTTTATCCTTTGAAGATATTTC-GATAATTTTACCCTTCGAGGGTATTTTG
1 GGGTATTTCGATAATTTTAACCTTCGAAGATATTTCAGA-AACTCTACCCTTCGAGGGTATTTTG
* *
37063652 GTAATTTTACCC
65 ATAATTTGACCC
37063664 ACGAATCGCA
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
79 2 0.03
80 59 0.91
81 4 0.06
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.42
Consensus pattern (81 bp):
GGGTATTTCGATAATTTTAACCTTCGAAGATATTTCAGAAACTCTACCCTTCGAGGGTATTTTGA
TAATTTGACCCTTCGA
Found at i:37063663 original size:27 final size:27
Alignment explanation
Indices: 37063494--37063663 Score: 184
Period size: 27 Copynumber: 6.3 Consensus size: 27
37063484 TATAATGGTC
*
37063494 ATTTTA-CCTCTCGGGGGTATTTCGATA
1 ATTTTACCCT-TCGAGGGTATTTCGATA
*
37063521 ATTTTAACCTTCGAGGGTATTTCAGA-A
1 ATTTTACCCTTCGAGGGTATTTC-GATA
* * * *
37063548 ACTCTACCTTTCGAGGGTATTTTGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
37063575 ATTTGACCCTTCGAGGGT-TTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * * *
37063601 ATTTTATCCTTTGAAGATATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
37063628 ATTTTACCCTTCGAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
37063655 ATTTTACCC
1 ATTTTACCC
37063664 ACGAATCGCA
Statistics
Matches: 117, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
26 22 0.19
27 90 0.77
28 5 0.04
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:37067634 original size:16 final size:15
Alignment explanation
Indices: 37067607--37067640 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
37067597 ATAACTAGTA
*
37067607 TATAATTATATTTAT
1 TATAATTATATTAAT
37067622 TATAATATATATTAAT
1 TATAAT-TATATTAAT
37067638 TAT
1 TAT
37067641 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:37071402 original size:27 final size:25
Alignment explanation
Indices: 37071372--37071442 Score: 79
Period size: 27 Copynumber: 2.8 Consensus size: 25
37071362 TATTTTGGTC
37071372 ATTTTACCCTTCGAGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTC-A-A
** * *
37071399 ATTTTACCCTTTTAAGGTATTTCAG
1 ATTTTACCCTTCGAGGGTATTTCAA
*
37071424 ATTTTACCCTTCGGGGGTA
1 ATTTTACCCTTCGAGGGTA
37071443 ATTCGATCAT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
25 15 0.42
26 1 0.03
27 20 0.56
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (25 bp):
ATTTTACCCTTCGAGGGTATTTCAA
Found at i:37072992 original size:25 final size:25
Alignment explanation
Indices: 37072955--37073008 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
37072945 TGAACCTCTG
* * *
37072955 ACCTTCTTACCACACTTGTGACGCC
1 ACCTCCTTACCACACCTATGACGCC
* *
37072980 ACCTCCTTGCCACACCTATGTCGCC
1 ACCTCCTTACCACACCTATGACGCC
37073005 ACCT
1 ACCT
37073009 TGCCACTACA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.19, C:0.44, G:0.11, T:0.26
Consensus pattern (25 bp):
ACCTCCTTACCACACCTATGACGCC
Found at i:37103543 original size:30 final size:30
Alignment explanation
Indices: 37103486--37103545 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
37103476 GCTTTTTGAA
* *
37103486 AATATTCACAAAAAGAGGCATCTAATTTTT
1 AATATTCACAAAAAGAGGCACCAAATTTTT
*
37103516 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTCACAAAAAGAGGC-ACCAAATTTTT
37103546 TAAAATAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.47, C:0.13, G:0.08, T:0.32
Consensus pattern (30 bp):
AATATTCACAAAAAGAGGCACCAAATTTTT
Found at i:37112929 original size:6 final size:6
Alignment explanation
Indices: 37112921--37112955 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
37112911 GTGTCAGCAT
*
37112921 TTACAT TTACAA TTACAA TTACAA TTACAA TTACA
1 TTACAA TTACAA TTACAA TTACAA TTACAA TTACA
37112956 GACACACTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (6 bp):
TTACAA
Found at i:37114980 original size:43 final size:43
Alignment explanation
Indices: 37114826--37114982 Score: 165
Period size: 43 Copynumber: 3.6 Consensus size: 43
37114816 AGTATGTACA
* * * *
37114826 ATTCGAAAATAGGGTCACAC-GCCCGTGCCACCAAACCATGTGCA
1 ATTCG-AAATAGGGTCACACAG-TCGTGTCGCCAAACCATGTGCC
* * **
37114870 ACTT-GAAATAGGATCACACAGTCATGTCGCCAAACTGTGTGCC
1 A-TTCGAAATAGGGTCACACAGTCGTGTCGCCAAACCATGTGCC
*
37114913 ATTCGAAATAGGGTCACACGGTCGTGTCGCCAAACCATGTGCC
1 ATTCGAAATAGGGTCACACAGTCGTGTCGCCAAACCATGTGCC
* **
37114956 ATTCAAAATAGGGTCACATTGTCGTGT
1 ATTCGAAATAGGGTCACACAGTCGTGT
37114983 AACAACAGGT
Statistics
Matches: 94, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
42 2 0.02
43 87 0.93
44 3 0.03
45 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22
Consensus pattern (43 bp):
ATTCGAAATAGGGTCACACAGTCGTGTCGCCAAACCATGTGCC
Found at i:37122000 original size:23 final size:23
Alignment explanation
Indices: 37121971--37122018 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
37121961 ACTTTTCATA
37121971 TTCACTCTTCATACTCAAGTCTC
1 TTCACTCTTCATACTCAAGTCTC
*
37121994 TTCACTCTTCATATTCAAGTCTC
1 TTCACTCTTCATACTCAAGTCTC
37122017 TT
1 TT
37122019 TACATTTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.31, G:0.04, T:0.44
Consensus pattern (23 bp):
TTCACTCTTCATACTCAAGTCTC
Found at i:37123148 original size:21 final size:20
Alignment explanation
Indices: 37123122--37123166 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
37123112 AGGATGATTG
37123122 CTTCAACCCGTACAAAGTTTT
1 CTTCAACCCGTA-AAAGTTTT
** *
37123143 CTTCAACTTGTAAAATTTTT
1 CTTCAACCCGTAAAAGTTTT
37123163 CTTC
1 CTTC
37123167 TTCTCCTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.42
Consensus pattern (20 bp):
CTTCAACCCGTAAAAGTTTT
Found at i:37126157 original size:15 final size:17
Alignment explanation
Indices: 37126139--37126171 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
37126129 AAACAAAGAA
37126139 AATGAAAA-AG-AATAT
1 AATGAAAAGAGAAATAT
37126154 AATGAAAAGAGAAATAT
1 AATGAAAAGAGAAATAT
37126171 A
1 A
37126172 TTTTTTTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 2 0.12
17 6 0.38
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (17 bp):
AATGAAAAGAGAAATAT
Found at i:37130772 original size:15 final size:17
Alignment explanation
Indices: 37130754--37130786 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
37130744 AAACAAAGAA
37130754 AATGAAAA-AG-AATAT
1 AATGAAAAGAGAAATAT
37130769 AATGAAAAGAGAAATAT
1 AATGAAAAGAGAAATAT
37130786 A
1 A
37130787 TTTTTTTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 2 0.12
17 6 0.38
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (17 bp):
AATGAAAAGAGAAATAT
Found at i:37134105 original size:19 final size:18
Alignment explanation
Indices: 37134071--37134127 Score: 69
Period size: 19 Copynumber: 3.0 Consensus size: 18
37134061 ATTATTCTAG
*
37134071 AAAATTTTTCATTTTTTT
1 AAAATTTTTTATTTTTTT
37134089 AAAATTTATTTATTTTTTT
1 AAAATTT-TTTATTTTTTT
*
37134108 GAAATTTTTATAATTTTTTT
1 AAAATTTTT-T-ATTTTTTT
37134128 GAATTTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.26
19 17 0.50
20 8 0.24
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
AAAATTTTTTATTTTTTT
Found at i:37134132 original size:19 final size:19
Alignment explanation
Indices: 37134100--37134170 Score: 70
Period size: 19 Copynumber: 3.5 Consensus size: 19
37134090 AAATTTATTT
37134100 ATTTTTTTGAAATTTTTATA
1 ATTTTTTTG-AATTTTTATA
* *
37134120 ATTTTTTTGAATTTTAAAA
1 ATTTTTTTGAATTTTTATA
* *
37134139 ATTATTTTGAATTATTTTGTA
1 ATTTTTTTGAA-T-TTTTATA
37134160 ATTTTTATTGA
1 ATTTTT-TTGA
37134171 GAGAGACCAA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
19 18 0.44
20 10 0.24
21 9 0.22
22 4 0.10
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (19 bp):
ATTTTTTTGAATTTTTATA
Found at i:37135531 original size:19 final size:19
Alignment explanation
Indices: 37135499--37135535 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
37135489 TTTTTAATAT
37135499 TTTCCCTCCAAACTATTTAC
1 TTTCCCTCCAAACT-TTTAC
37135519 TTTCCCT-CAAACTTTTA
1 TTTCCCTCCAAACTTTTA
37135536 TTCTCCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 6 0.35
20 7 0.41
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.43
Consensus pattern (19 bp):
TTTCCCTCCAAACTTTTAC
Found at i:37135717 original size:17 final size:17
Alignment explanation
Indices: 37135659--37135718 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
37135649 TTATATATAC
37135659 TATTTATATTATTAAAT
1 TATTTATATTATTAAAT
* *
37135676 TAAATTTCACATT-TTATAT
1 T--ATTT-ATATTATTAAAT
37135695 TATTTATATTATTAAAT
1 TATTTATATTATTAAAT
*
37135712 TGTTTAT
1 TATTTAT
37135719 TGAATATTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 4 0.12
17 16 0.47
19 10 0.29
20 4 0.12
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (17 bp):
TATTTATATTATTAAAT
Found at i:37140623 original size:15 final size:15
Alignment explanation
Indices: 37140603--37140631 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37140593 CATGTAGAAA
37140603 TTAAATTAAACTAAG
1 TTAAATTAAACTAAG
37140618 TTAAATTAAACTAA
1 TTAAATTAAACTAA
37140632 TGTAATTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.34
Consensus pattern (15 bp):
TTAAATTAAACTAAG
Found at i:37141861 original size:42 final size:41
Alignment explanation
Indices: 37141815--37141895 Score: 126
Period size: 42 Copynumber: 2.0 Consensus size: 41
37141805 ATGGTAAATC
* *
37141815 CAACAACCCATGTTTATCTTCTCCTCTTTTTAAATTCTTTAT
1 CAACAACCCAAGATTATCTTCTCCT-TTTTTAAATTCTTTAT
*
37141857 CAACAACTCAAGATTATCTTCTCCTTTTTTAAATTCTTT
1 CAACAACCCAAGATTATCTTCTCCTTTTTTAAATTCTTT
37141896 TTTTCTAGGA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 14 0.39
42 22 0.61
ACGTcount: A:0.26, C:0.25, G:0.02, T:0.47
Consensus pattern (41 bp):
CAACAACCCAAGATTATCTTCTCCTTTTTTAAATTCTTTAT
Found at i:37143483 original size:4 final size:4
Alignment explanation
Indices: 37143474--37143506 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
37143464 CAATTTCAAC
*
37143474 CATT CATT CATT CATT CATT CATT CACT CATT C
1 CATT CATT CATT CATT CATT CATT CATT CATT C
37143507 GCTCATTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.24, C:0.30, G:0.00, T:0.45
Consensus pattern (4 bp):
CATT
Found at i:37152826 original size:144 final size:144
Alignment explanation
Indices: 37152534--37152828 Score: 459
Period size: 144 Copynumber: 2.0 Consensus size: 144
37152524 AACTTTTGTT
** *
37152534 TTTTTTTTAAAAGGAGAGTTTTAATTTTTAAAATAAAAATCTATTTTTTAGTCATTTTAAAGGAA
1 TTTTTTTTAAAAGGAGAAATTTAATTTTTAAAATAAAAATATATTTTTTAGTCATTTTAAAGGAA
*
37152599 AGATTAAAATTTTAAAATAAAGTTTTGAGTTTTTTCAACTATTTCGAAATAAAATTTTTGATCTT
66 AGATTAAAATTTTAAAATAAAGTTTTGAG-TTTTTCAACTATTTCGAAATAAAAGTTTTGATCTT
37152664 TATGAAAAGTAGTGA
130 TATGAAAAGTAGTGA
** * *
37152679 TTTTTTTTAAAA-GAGAAATTTAGATTTTTAAAAATGTAAATATGTTTTTTAGTCATTTTAAATG
1 TTTTTTTTAAAAGGAGAAATTTA-ATTTTT-AAAATAAAAATATATTTTTTAGTCATTTTAAAGG
* *
37152743 AAAGTTTAAAATTTTTAAATAAAGTTTTGA-TTTTTCAACTATTTCGAAATAAAAGTTTTGATCT
64 AAAGATTAAAATTTTAAAATAAAGTTTTGAGTTTTTCAACTATTTCGAAATAAAAGTTTTGATCT
37152807 TTATGAAAAGTAGTGA
129 TTATGAAAAGTAGTGA
37152823 TTTTTT
1 TTTTTT
37152829 AAAAGAAAAA
Statistics
Matches: 138, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
144 63 0.46
145 18 0.13
146 57 0.41
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.46
Consensus pattern (144 bp):
TTTTTTTTAAAAGGAGAAATTTAATTTTTAAAATAAAAATATATTTTTTAGTCATTTTAAAGGAA
AGATTAAAATTTTAAAATAAAGTTTTGAGTTTTTCAACTATTTCGAAATAAAAGTTTTGATCTTT
ATGAAAAGTAGTGA
Found at i:37154163 original size:27 final size:27
Alignment explanation
Indices: 37154115--37154359 Score: 112
Period size: 27 Copynumber: 9.1 Consensus size: 27
37154105 TCGATATCTG
* * * *
37154115 GACCGAAATACCCCCAAAGGGTAAAAT
1 GACCAAAATACCCTCGATGGGTAAAAT
* * *
37154142 GACCCAAATATCTTCGATGGGTAAAAT
1 GACCAAAATACCCTCGATGGGTAAAAT
*
37154169 GACCAAAATACCCTCGATGCGTAAAAT
1 GACCAAAATACCCTCGATGGGTAAAAT
* * *
37154196 AACTAAAA-AGCCC-CCATAGGGTAAAAT
1 GACCAAAATA-CCCTCGAT-GGGTAAAAT
* * *
37154223 GACCGAAATACCCCCG-TAGGGTAGAAT
1 GACCAAAATACCCTCGAT-GGGTAAAAT
* *
37154250 -ACCAAAACACCC-CCATAGGGTAAAAT
1 GACCAAAATACCCTCGAT-GGGTAAAAT
* * ** * *
37154276 CATCGTAATACCCTTG-TAGGGCAAAAT
1 GACCAAAATACCCTCGAT-GGGTAAAAT
**
37154303 GACCGTAATA-CCTCTG-TAGGGTAAAAT
1 GACCAAAATACCCTC-GAT-GGGTAAAAT
* * *
37154330 GACCATAATGCCCTTG-TAGGGTAAAAT
1 GACCAAAATACCCTCGAT-GGGTAAAAT
37154357 GAC
1 GAC
37154360 TTTAATATCC
Statistics
Matches: 172, Mismatches: 37, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
25 1 0.01
26 27 0.16
27 139 0.81
28 5 0.03
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.19
Consensus pattern (27 bp):
GACCAAAATACCCTCGATGGGTAAAAT
Found at i:37154218 original size:54 final size:53
Alignment explanation
Indices: 37154160--37154275 Score: 146
Period size: 54 Copynumber: 2.2 Consensus size: 53
37154150 TATCTTCGAT
* *
37154160 GGGTAAAATGACCAAAATACCCTCG-ATGCGTAAAATAACTAAAA-AGCCCCCATA
1 GGGTAAAATGACCAAAATACCCCCGTA-GCGTAAAAT-ACCAAAACA-CCCCCATA
* * *
37154214 GGGTAAAATGACCGAAATACCCCCGTAGGGTAGAATACCAAAACACCCCCATA
1 GGGTAAAATGACCAAAATACCCCCGTAGCGTAAAATACCAAAACACCCCCATA
37154267 GGGTAAAAT
1 GGGTAAAAT
37154276 CATCGTAATA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
53 23 0.42
54 31 0.56
55 1 0.02
ACGTcount: A:0.42, C:0.24, G:0.18, T:0.16
Consensus pattern (53 bp):
GGGTAAAATGACCAAAATACCCCCGTAGCGTAAAATACCAAAACACCCCCATA
Found at i:37154261 original size:26 final size:27
Alignment explanation
Indices: 37154115--37154275 Score: 114
Period size: 27 Copynumber: 6.0 Consensus size: 27
37154105 TCGATATCTG
* * *
37154115 GACCGAAATACCCCCAAAGGGTAAAAT
1 GACCAAAACACCCCCATAGGGTAAAAT
* * ** *
37154142 GACCCAAATATCTTCGAT-GGGTAAAAT
1 GACCAAAACA-CCCCCATAGGGTAAAAT
* * *
37154169 GACCAAAATACCCTCGAT-GCGTAAAAT
1 GACCAAAACACCC-CCATAGGGTAAAAT
* *
37154196 AACTAAAA-AGCCCCCATAGGGTAAAAT
1 GACCAAAACA-CCCCCATAGGGTAAAAT
* * * *
37154223 GACCGAAATACCCCCGTAGGGTAGAAT
1 GACCAAAACACCCCCATAGGGTAAAAT
37154250 -ACCAAAACACCCCCATAGGGTAAAAT
1 GACCAAAACACCCCCATAGGGTAAAAT
37154276 CATCGTAATA
Statistics
Matches: 107, Mismatches: 22, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
26 27 0.25
27 76 0.71
28 4 0.04
ACGTcount: A:0.42, C:0.25, G:0.17, T:0.16
Consensus pattern (27 bp):
GACCAAAACACCCCCATAGGGTAAAAT
Found at i:37154344 original size:54 final size:53
Alignment explanation
Indices: 37154211--37154610 Score: 392
Period size: 54 Copynumber: 7.5 Consensus size: 53
37154201 AAAAGCCCCC
* * ** * ** * *
37154211 ATAGGGTAAAATGACCGAAATACCCCCGTAGGGTAGAAT-ACCAAAACACCCCC
1 ATAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCGTAATA-CCCT
* * * *
37154264 ATAGGGTAAAATCATCGTAATACCCTTGTAGGGCAAAATGACCGTAATACCTCT
1 ATAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCGTAATACC-CT
* * **
37154318 GTAGGGTAAAATGACCATAATGCCCTTGTAGGGTAAAATGACTTTAATATCCC-
1 ATAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCGTAATA-CCCT
* * * * *
37154371 ATAGGGTAAAATGACTGTAATACCCTTGT-GGGTAAAATAACTGTAATGCCCT
1 ATAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCGTAATACCCT
* * * * * *
37154423 GTAGGGTAAAATGACCGTAATACCCCTGTAGGATAAAATAACCGTAATGCCCTT
1 ATAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCGTAATACCC-T
* * * * *
37154477 GTAGGGTAAAATAACCATAATGCCCCTGTAGGGTAAAATGATCGTAATACCCCT
1 ATAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCGTAATA-CCCT
* *
37154531 ATAGGGTAAAATGACCGTAATGCCCTTATAGGGTAAAATGACCATAATACCCCT
1 ATAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCGTAATA-CCCT
**
37154585 ATAGGGTAAAATGACATTAATGCCCT
1 ATAGGGTAAAATGACCGTAATGCCCT
37154611 GATGGGTAAA
Statistics
Matches: 293, Mismatches: 47, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
51 3 0.01
52 42 0.14
53 79 0.27
54 164 0.56
55 5 0.02
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (53 bp):
ATAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCGTAATACCCT
Found at i:37154365 original size:27 final size:27
Alignment explanation
Indices: 37154265--37154610 Score: 351
Period size: 27 Copynumber: 12.9 Consensus size: 27
37154255 AACACCCCCA
* * *
37154265 TAGGGTAAAATCATCGTAATACCCTTG
1 TAGGGTAAAATGACCGTAATGCCCTTG
* *
37154292 TAGGGCAAAATGACCGTAAT-ACCTCTG
1 TAGGGTAAAATGACCGTAATGCCCT-TG
*
37154319 TAGGGTAAAATGACCATAATGCCCTTG
1 TAGGGTAAAATGACCGTAATGCCCTTG
** * *
37154346 TAGGGTAAAATGACTTTAATATCCC--A
1 TAGGGTAAAATGACCGTAAT-GCCCTTG
* *
37154372 TAGGGTAAAATGACTGTAATACCCTTG
1 TAGGGTAAAATGACCGTAATGCCCTTG
* *
37154399 T-GGGTAAAATAACTGTAATGCCC-TG
1 TAGGGTAAAATGACCGTAATGCCCTTG
* *
37154424 TAGGGTAAAATGACCGTAATACCCCTG
1 TAGGGTAAAATGACCGTAATGCCCTTG
* *
37154451 TAGGATAAAATAACCGTAATGCCCTTG
1 TAGGGTAAAATGACCGTAATGCCCTTG
* * *
37154478 TAGGGTAAAATAACCATAATGCCCCTG
1 TAGGGTAAAATGACCGTAATGCCCTTG
* * * *
37154505 TAGGGTAAAATGATCGTAATACCCCTA
1 TAGGGTAAAATGACCGTAATGCCCTTG
*
37154532 TAGGGTAAAATGACCGTAATGCCCTTA
1 TAGGGTAAAATGACCGTAATGCCCTTG
* * * *
37154559 TAGGGTAAAATGACCATAATACCCCTA
1 TAGGGTAAAATGACCGTAATGCCCTTG
**
37154586 TAGGGTAAAATGACATTAATGCCCT
1 TAGGGTAAAATGACCGTAATGCCCT
37154611 GATGGGTAAA
Statistics
Matches: 271, Mismatches: 41, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
25 6 0.02
26 61 0.23
27 198 0.73
28 6 0.02
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
TAGGGTAAAATGACCGTAATGCCCTTG
Found at i:37154523 original size:81 final size:81
Alignment explanation
Indices: 37154206--37154598 Score: 438
Period size: 81 Copynumber: 4.9 Consensus size: 81
37154196 AACTAAAAAG
* * * ** * * ** **
37154206 CCCCCATAGGGTAAAATGACCGAAATACCCCCGTAGGGTAGAAT-ACCAAAACACCCCCATAGGG
1 CCCCTATAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATAACCATAATGCCCCTGTAGGG
*
37154270 TAAAATCATCGTAATA
66 TAAAATGATCGTAATA
* * * * * *
37154286 CCCTTGTAGGGCAAAATGACCGTAAT-ACCTCTGTAGGGTAAAATGACCATAATGCCCTTGTAGG
1 CCCCTATAGGGTAAAATGACCGTAATGCCCT-TGTAGGGTAAAATAACCATAATGCCCCTGTAGG
*
37154350 GTAAAATGA-CTTTAATA
65 GTAAAATGATC-GTAATA
* * * **
37154367 TCCC-ATAGGGTAAAATGACTGTAATACCCTTGT-GGGTAAAATAACTGTAATG-CCCTGTAGGG
1 CCCCTATAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATAACCATAATGCCCCTGTAGGG
*
37154429 TAAAATGACCGTAATA
66 TAAAATGATCGTAATA
* * *
37154445 CCCCTGTAGGATAAAATAACCGTAATGCCCTTGTAGGGTAAAATAACCATAATGCCCCTGTAGGG
1 CCCCTATAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATAACCATAATGCCCCTGTAGGG
37154510 TAAAATGATCGTAATA
66 TAAAATGATCGTAATA
* * * *
37154526 CCCCTATAGGGTAAAATGACCGTAATGCCCTTATAGGGTAAAATGACCATAATACCCCTATAGGG
1 CCCCTATAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATAACCATAATGCCCCTGTAGGG
37154591 TAAAATGA
66 TAAAATGA
37154599 CATTAATGCC
Statistics
Matches: 261, Mismatches: 44, Indels: 15
0.82 0.14 0.05
Matches are distributed among these distances:
78 25 0.10
79 43 0.16
80 71 0.27
81 122 0.47
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (81 bp):
CCCCTATAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATAACCATAATGCCCCTGTAGGG
TAAAATGATCGTAATA
Found at i:37154829 original size:27 final size:27
Alignment explanation
Indices: 37154791--37154855 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 27
37154781 GTGGAGGAAG
37154791 TACTG-TACTGGTGGCTCT-GCCACA-A
1 TACTGTTACTGGTGGCT-TGGCCACATA
37154816 TCACTGTTACTGGTGGCTTGGCCACATA
1 T-ACTGTTACTGGTGGCTTGGCCACATA
*
37154844 TACTATTACTGG
1 TACTGTTACTGG
37154856 CAATTTTGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
25 1 0.03
26 5 0.14
27 27 0.77
28 2 0.06
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTTGGCCACATA
Found at i:37161231 original size:93 final size:93
Alignment explanation
Indices: 37161072--37161279 Score: 389
Period size: 93 Copynumber: 2.2 Consensus size: 93
37161062 TTGATGTTGT
**
37161072 GTTTTAGAGTTTGAAGGTAATTGGGAGAGATTTCTACCATACAAAGCCTTATATGGTTGAAAATA
1 GTTTTAGAGTTTGAAGGTAATTGGGAGAGATTTCTACCATACAAAGCCTTATACAGTTGAAAATA
37161137 TCAGGCGAGCATGAAAATGAGTTTTAGA
66 TCAGGCGAGCATGAAAATGAGTTTTAGA
*
37161165 GTTTTAGAGTTTGAAGGTAATTGGGAGAGATTTCTACCATACAAAGCTTTATACAGTTGAAAATA
1 GTTTTAGAGTTTGAAGGTAATTGGGAGAGATTTCTACCATACAAAGCCTTATACAGTTGAAAATA
37161230 TCAGGCGAGCATGAAAATGAGTTTTAGA
66 TCAGGCGAGCATGAAAATGAGTTTTAGA
37161258 GTTTTAGAGTTTGAAGGTAATT
1 GTTTTAGAGTTTGAAGGTAATT
37161280 TGCATACAAT
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 112 1.00
ACGTcount: A:0.34, C:0.09, G:0.25, T:0.33
Consensus pattern (93 bp):
GTTTTAGAGTTTGAAGGTAATTGGGAGAGATTTCTACCATACAAAGCCTTATACAGTTGAAAATA
TCAGGCGAGCATGAAAATGAGTTTTAGA
Found at i:37163821 original size:35 final size:35
Alignment explanation
Indices: 37163766--37163835 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
37163756 AGGCTCCATA
* *
37163766 TATATATTTAACAACCGCATATCACC-ATGTGCATT
1 TATAAATTCAACAACCGCATAT-ACCAATGTGCATT
37163801 TATAAATTCAACAACCGCATATACCTAATGTGCAT
1 TATAAATTCAACAACCGCATATACC-AATGTGCAT
37163836 ATGCCTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
34 3 0.10
35 20 0.65
36 8 0.26
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.31
Consensus pattern (35 bp):
TATAAATTCAACAACCGCATATACCAATGTGCATT
Found at i:37164142 original size:41 final size:42
Alignment explanation
Indices: 37164097--37164181 Score: 136
Period size: 41 Copynumber: 2.0 Consensus size: 42
37164087 CCGAAATGTA
* *
37164097 TCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTA-AT
1 TCACCGACATCAAGCCTGCTAGACGTAAAGTCTGAATTACAT
*
37164138 TCACCGACATCAAGCCTGCTAGACGTAAAGTCTGTATTACAT
1 TCACCGACATCAAGCCTGCTAGACGTAAAGTCTGAATTACAT
37164180 TC
1 TC
37164182 GATCACTTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 36 0.90
42 4 0.10
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (42 bp):
TCACCGACATCAAGCCTGCTAGACGTAAAGTCTGAATTACAT
Found at i:37171855 original size:41 final size:41
Alignment explanation
Indices: 37171753--37171861 Score: 146
Period size: 41 Copynumber: 2.7 Consensus size: 41
37171743 ACCGGCTTTT
* * * * * *
37171753 AGCCTGCTAGACCTATAGTCCGAAATGTATCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGAATTATATCACCGGCATCA
*
37171794 AGCCTGCTAGACGTAAAGTCTGAATTATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAATTATATCACCGGCATCA
*
37171835 AGCCTGCTAGACGTAAAGTCTGTATTA
1 AGCCTGCTAGACGTAAAGTCTGAATTA
37171862 CATTCGATCA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAATTATATCACCGGCATCA
Found at i:37173558 original size:13 final size:13
Alignment explanation
Indices: 37173540--37173564 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37173530 CAATCAAATG
37173540 CACACAAAATAAA
1 CACACAAAATAAA
37173553 CACACAAAATAA
1 CACACAAAATAA
37173565 TATTAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:37188071 original size:40 final size:39
Alignment explanation
Indices: 37188040--37188249 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
37188030 GGACTAAGAT
* *
37188040 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
37188080 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
37188120 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
37188160 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
37188200 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
37188239 CCGAAGGCATT
1 CCGAAGGCATT
37188250 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:37188203 original size:120 final size:120
Alignment explanation
Indices: 37187987--37188249 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
37187977 TTGAATGCTG
* *
37187987 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
37188051 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
37188107 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
37188170 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
37188226 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
37188250 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:37188269 original size:79 final size:80
Alignment explanation
Indices: 37187988--37188284 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
37187978 TGAATGCTGT
* ** * * * **
37187988 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
37188051 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
37188068 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
37188132 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
37188148 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
37188212 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
37188227 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
37188285 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:37196021 original size:40 final size:39
Alignment explanation
Indices: 37195990--37196199 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
37195980 GGACTAAGAT
* *
37195990 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
37196030 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
37196070 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
37196110 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
37196150 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
37196189 CCGAAGGCATT
1 CCGAAGGCATT
37196200 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:37196153 original size:120 final size:120
Alignment explanation
Indices: 37195937--37196199 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
37195927 TTGAATGCTG
* *
37195937 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
37196001 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
37196057 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
37196120 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
37196176 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
37196200 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:37196219 original size:79 final size:80
Alignment explanation
Indices: 37195938--37196234 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
37195928 TGAATGCTGT
* ** * * * **
37195938 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
37196001 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
37196018 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
37196082 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
37196098 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
37196162 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
37196177 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
37196235 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:37197828 original size:21 final size:21
Alignment explanation
Indices: 37197802--37197848 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
37197792 TCATAACACT
37197802 GAGGAGGCCACGTGGGAGCCA
1 GAGGAGGCCACGTGGGAGCCA
*
37197823 GAGGAGGCCACGTGGGAGCTA
1 GAGGAGGCCACGTGGGAGCCA
37197844 GAGGA
1 GAGGA
37197849 TGTGATGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.49, T:0.06
Consensus pattern (21 bp):
GAGGAGGCCACGTGGGAGCCA
Found at i:37214533 original size:140 final size:140
Alignment explanation
Indices: 37214389--37214661 Score: 327
Period size: 140 Copynumber: 1.9 Consensus size: 140
37214379 AAAAATCGAT
* * *
37214389 AATGTTTTGCGCCCAACGCTAGTCGAAAAAACCGACTAATAGTGTG-CCCAGCACTAGTCGAATA
1 AATGTTTGGCACCCAACGCTAGTCGAAAAAACCGACAAATAGTGTGCCCCA-CACTAGTCGAATA
37214453 ATTGAA-AATGTTTTGCACCCAGCGCTAGTCAAATAAAACGACGAATACTGTG-CCTAGCACTAG
65 ATT-AACAATGTTTTGCACCCAGCGCTAGTCAAATAAAACGACGAATACTGTGACC-AGCACTAG
37214516 TCGAATAACCAAC
128 TCGAATAACCAAC
* ** * ** *
37214529 AATGTTTGGCACCTAGTGCTAGTCGGATCAACCGACAAATAGTGTGCCCCACACTAGTGGAATAA
1 AATGTTTGGCACCCAACGCTAGTCGAAAAAACCGACAAATAGTGTGCCCCACACTAGTCGAATAA
** * * ** * * *
37214594 TTAACAATGTTTTGTGCGCAGCGTTAGTCGGATAAACCGATGAATAGTGTGACCAGCACTAGTCG
66 TTAACAATGTTTTGCACCCAGCGCTAGTCAAATAAAACGACGAATACTGTGACCAGCACTAGTCG
37214659 AAT
131 AAT
37214662 TATCAAAAAT
Statistics
Matches: 111, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
139 2 0.02
140 103 0.93
141 6 0.05
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (140 bp):
AATGTTTGGCACCCAACGCTAGTCGAAAAAACCGACAAATAGTGTGCCCCACACTAGTCGAATAA
TTAACAATGTTTTGCACCCAGCGCTAGTCAAATAAAACGACGAATACTGTGACCAGCACTAGTCG
AATAACCAAC
Found at i:37214677 original size:70 final size:70
Alignment explanation
Indices: 37214253--37214678 Score: 295
Period size: 70 Copynumber: 6.1 Consensus size: 70
37214243 GTAATAATCT
* * * * * * * * * *
37214253 TTTTATGCCCAACGCTAGTTGGATAGACCAACAAATAGTGTGCCCAACAATAGTTGAATAAT-AG
1 TTTTGTGCCCAGCGCTAGTCGAATAAACCGACGAATAGTGTGCCCAGCACTAGTCGAATAATCA-
* **
37214317 ACAACA
65 AAAATG
* * * * * * * * * * *
37214323 TTTTGTGCCCACCGCTAATTGGATAAACCGTCGAATAGTATGTCTC-GCAGTAGCCGAAAAATCG
1 TTTTGTGCCCAGCGCTAGTCGAATAAACCGACGAATAGTGTG-CCCAGCACTAGTCGAATAATCA
*
37214387 ATAATG
65 AAAATG
* * * * **
37214393 TTTTGCGCCCAACGCTAGTCGAAAAAACCGACTAATAGTGTGCCCAGCACTAGTCGAATAATTGA
1 TTTTGTGCCCAGCGCTAGTCGAATAAACCGACGAATAGTGTGCCCAGCACTAGTCGAATAATCAA
37214458 AAATG
66 AAATG
** * * * * *
37214463 TTTTGCACCCAGCGCTAGTCAAATAAAACGACGAATACTGTGCCTAGCACTAGTCGAATAACCAA
1 TTTTGTGCCCAGCGCTAGTCGAATAAACCGACGAATAGTGTGCCCAGCACTAGTCGAATAATCAA
*
37214528 CAATG
66 AAATG
* * * * *
37214533 -TTTG-GCACCTAGTGCTAGTCGGATCAACCGACAAATAGTGTGCCCCA-CACTAGTGGAATAAT
1 TTTTGTGC-CC-AGCGCTAGTCGAATAAACCGACGAATAGTGTG-CCCAGCACTAGTCGAATAAT
* *
37214595 TAACAATG
63 CAAAAATG
* * * * * *
37214603 TTTTGTGCGCAGCGTTAGTCGGATAAACCGATGAATAGTGTGACCAGCACTAGTCGAATTATCAA
1 TTTTGTGCCCAGCGCTAGTCGAATAAACCGACGAATAGTGTGCCCAGCACTAGTCGAATAATCAA
*
37214668 AAATA
66 AAATG
37214673 TTTTGT
1 TTTTGT
37214679 TCTAGTGCTA
Statistics
Matches: 278, Mismatches: 69, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
68 1 0.00
69 11 0.04
70 254 0.91
71 10 0.04
72 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (70 bp):
TTTTGTGCCCAGCGCTAGTCGAATAAACCGACGAATAGTGTGCCCAGCACTAGTCGAATAATCAA
AAATG
Found at i:37214756 original size:20 final size:20
Alignment explanation
Indices: 37214731--37214785 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
37214721 GCAAATCCAT
37214731 AATATCACATTTCATAATTC
1 AATATCACATTTCATAATTC
* *
37214751 AATATCATATTTCATAATTG
1 AATATCACATTTCATAATTC
37214771 AATATCACATATTCA
1 AATATCACAT-TTCA
37214786 CTTCAATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 27 0.87
21 4 0.13
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (20 bp):
AATATCACATTTCATAATTC
Found at i:37219853 original size:81 final size:83
Alignment explanation
Indices: 37219477--37219882 Score: 362
Period size: 81 Copynumber: 5.0 Consensus size: 83
37219467 TATTTGGACT
* * * *
37219477 GAAATA-CCCCTAAAGGGTAAAATGACCGAAATACCC-CTGATGGGTAAAATGACCAAAATACTC
1 GAAATACCCCCGAATGGGTAAAATGACCGAAATACCCTC-GATAGGTAAAATGACCAAAATACCC
37219540 TCGA-AAGGTAAAATGATC
65 TCGATAAGGTAAAATGATC
* * * *
37219558 GAAATACTCTCGAA-GGGTAAAATGACCGAAATACCC-CTAATAGGTAAAATAACCAAAATACCC
1 GAAATACCCCCGAATGGGTAAAATGACCGAAATACCCTC-GATAGGTAAAATGACCAAAATACCC
37219621 TCGAT--GGATAAAATGATC
65 TCGATAAGG-TAAAATGATC
* * * ***
37219639 GAAATACCCTCG-ATGGGTAAAATGATCGAAATACCCTCGAT-GGCTAAAATAATTGAAATACCC
1 GAAATACCCCCGAATGGGTAAAATGACCGAAATACCCTCGATAGG-TAAAATGACCAAAATACCC
*
37219702 CCG--AAGAGTAAAATGATC
65 TCGATAAG-GTAAAATGATC
* * *
37219720 GAAATA-CCCCAAATGGATAAAATGACCGAAATACCCTCGA-AGGGTTAAATGACCAAAATACCC
1 GAAATACCCCCGAATGGGTAAAATGACCGAAATACCCTCGATA-GGTAAAATGACCAAAATACCC
*
37219783 TCGATAAGGTAAAATGACC
65 TCGATAAGGTAAAATGATC
* * ** * * **
37219802 GAAATACCCCCGTA-GGGTAGAAT-ACTAAAATCCCCTC-ATAAGATAAAATGACCGTAATACCC
1 GAAATACCCCCGAATGGGTAAAATGACCGAAATACCCTCGAT-AGGTAAAATGACCAAAATACCC
*
37219864 -CTG-TAGGGTAAAATGATC
65 TC-GATAAGGTAAAATGATC
37219882 G
1 G
37219883 TAATGCGCTG
Statistics
Matches: 269, Mismatches: 38, Indels: 37
0.78 0.11 0.11
Matches are distributed among these distances:
80 24 0.09
81 205 0.76
82 32 0.12
83 8 0.03
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (83 bp):
GAAATACCCCCGAATGGGTAAAATGACCGAAATACCCTCGATAGGTAAAATGACCAAAATACCCT
CGATAAGGTAAAATGATC
Found at i:37219886 original size:27 final size:28
Alignment explanation
Indices: 37219477--37219879 Score: 322
Period size: 27 Copynumber: 14.9 Consensus size: 28
37219467 TATTTGGACT
*
37219477 GAAATACCCCT-AAAGGGTAAAATGACC
1 GAAATACCCCTCGAAGGGTAAAATGACC
*
37219504 GAAATACCCCT-GATGGGTAAAATGACC
1 GAAATACCCCTCGAAGGGTAAAATGACC
* * * *
37219531 AAAATA-CTCTCGAAAGGTAAAATGATC
1 GAAATACCCCTCGAAGGGTAAAATGACC
*
37219558 GAAATA-CTCTCGAAGGGTAAAATGACC
1 GAAATACCCCTCGAAGGGTAAAATGACC
* *
37219585 GAAATACCCCT--AATAGGTAAAATAACC
1 GAAATACCCCTCGAA-GGGTAAAATGACC
* * * *
37219612 AAAATA-CCCTCGATGGATAAAATGATC
1 GAAATACCCCTCGAAGGGTAAAATGACC
* *
37219639 GAAATA-CCCTCGATGGGTAAAATGATC
1 GAAATACCCCTCGAAGGGTAAAATGACC
* * * **
37219666 GAAATA-CCCTCGATGGCTAAAATAATT
1 GAAATACCCCTCGAAGGGTAAAATGACC
* *
37219693 GAAATACCCC-CGAAGAGTAAAATGATC
1 GAAATACCCCTCGAAGGGTAAAATGACC
* *
37219720 GAAATA-CCC-CAAATGGATAAAATGACC
1 GAAATACCCCTCGAA-GGGTAAAATGACC
*
37219747 GAAATA-CCCTCGAAGGGTTAAATGACC
1 GAAATACCCCTCGAAGGGTAAAATGACC
* *
37219774 AAAATA-CCCTCGATAAGGTAAAATGACC
1 GAAATACCCCTCGA-AGGGTAAAATGACC
* * *
37219802 GAAATACCCC-CGTAGGGTAGAAT-ACT
1 GAAATACCCCTCGAAGGGTAAAATGACC
* * *
37219828 AAAAT-CCCCTC-ATAAGATAAAATGACC
1 GAAATACCCCTCGA-AGGGTAAAATGACC
* *
37219855 GTAATACCCCT-GTAGGGTAAAATGA
1 GAAATACCCCTCGAAGGGTAAAATGA
37219880 TCGTAATGCG
Statistics
Matches: 306, Mismatches: 55, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
25 4 0.01
26 29 0.09
27 236 0.77
28 34 0.11
29 3 0.01
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (28 bp):
GAAATACCCCTCGAAGGGTAAAATGACC
Found at i:37219949 original size:23 final size:23
Alignment explanation
Indices: 37219922--37219965 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
37219912 TGCCCCTCGA
37219922 GGTTAAATGATT-ATTTTGTCTGT
1 GGTTAAATGATTGA-TTTGTCTGT
37219945 GGTTAAATGATTGATTTGTCT
1 GGTTAAATGATTGATTTGTCT
37219966 TTGTTTGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.23, C:0.05, G:0.23, T:0.50
Consensus pattern (23 bp):
GGTTAAATGATTGATTTGTCTGT
Found at i:37220002 original size:24 final size:23
Alignment explanation
Indices: 37219936--37220002 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 23
37219926 AAATGATTAT
* * *
37219936 TTTGTCTGTGGTTAAATGATTGA
1 TTTGTCTGTGTTTGAATGACTGA
* *
37219959 TTTGTCTTTGTTTGGTATGACTGA
1 TTTGTCTGTGTTT-GAATGACTGA
37219983 TTTGTCTGTAGTTTGAATGA
1 TTTGTCTGT-GTTTGAATGA
37220003 ATCAGTCTGA
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
23 11 0.31
24 20 0.57
25 4 0.11
ACGTcount: A:0.18, C:0.06, G:0.25, T:0.51
Consensus pattern (23 bp):
TTTGTCTGTGTTTGAATGACTGA
Found at i:37220121 original size:27 final size:27
Alignment explanation
Indices: 37220082--37220133 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
37220072 TACTGTACTG
37220082 GTGGCTCTGCCACA-ATCACTATTACCA
1 GTGGCTCTGCCACATAT-ACTATTACCA
37220109 GTGGCT-TGCCCACATATACTATTAC
1 GTGGCTCTG-CCACATATACTATTAC
37220134 TGGCAGCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 2 0.09
27 19 0.83
28 2 0.09
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (27 bp):
GTGGCTCTGCCACATATACTATTACCA
Found at i:37220189 original size:26 final size:26
Alignment explanation
Indices: 37220134--37220189 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
37220124 ATACTATTAC
* *
37220134 TGGCAGCTTTGCTACAATACTATTGC
1 TGGCAGCTTTGCTACAATACTACTGA
* * *
37220160 TGGCAGCTTTGCTGCGATGCTACTGA
1 TGGCAGCTTTGCTACAATACTACTGA
37220186 TGGC
1 TGGC
37220190 TTTGTGTCGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32
Consensus pattern (26 bp):
TGGCAGCTTTGCTACAATACTACTGA
Found at i:37220226 original size:32 final size:32
Alignment explanation
Indices: 37220180--37220448 Score: 269
Period size: 32 Copynumber: 8.4 Consensus size: 32
37220170 GCTGCGATGC
*
37220180 TACTGATGGCTTTGTGTCGATCATAGTACTGT
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
* * * *
37220212 TATTGATGGTTTTGTACCGATCATAGTACAGT
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
* *
37220244 TACTAATGGCTTTGTGCCGATCATAGTACCGT
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
* *
37220276 TACTGATGGTTTTGTGCCGATCATATTTCACTGT
1 TACTGATGGCTTTGTGCCGATCATA-GT-ACTGT
* * *
37220310 TACTGATGGCTGTGTGTCGATCATA-TCACTGC
1 TACTGATGGCTTTGTGCCGATCATAGT-ACTGT
* **
37220342 TACTGATGGCTTTGTACCGATCAT-GTTACCAT
1 TACTGATGGCTTTGTGCCGATCATAG-TACTGT
*
37220374 TACTGATGG-TTGTGTGCCGATCATA-TCACTGC
1 TACTGATGGCTT-TGTGCCGATCATAGT-ACTGT
* * *
37220406 TACTGATGGCTTTGTGCCAATCACATTACTG-
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
*
37220437 TACTTATGGCTT
1 TACTGATGGCTT
37220449 GTAGCCAATC
Statistics
Matches: 197, Mismatches: 31, Indels: 19
0.80 0.13 0.08
Matches are distributed among these distances:
31 14 0.07
32 152 0.77
33 5 0.03
34 26 0.13
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATAGTACTGT
Found at i:37220413 original size:130 final size:130
Alignment explanation
Indices: 37220180--37220428 Score: 337
Period size: 130 Copynumber: 1.9 Consensus size: 130
37220170 GCTGCGATGC
* * * *
37220180 TACTGATGGCTTTGTGTCGATCATAGTACTGTTATTGATGGTTTTGTACCGATCATAGTACAGTT
1 TACTGATGGCTGTGTGTCGATCATAGTACTGCTACTGATGGCTTTGTACCGATCATAGTACAGTT
* * *
37220245 ACTAATGGCTTTGTGCCGATCATAGTACCGTTACTGATGGTTTTGTGCCGATCATATTTCACTGT
66 ACTAATGGCTTTGTGCCGATCATAGTACCGCTACTGATGGCTTTGTGCCAATCATATTTCACTGT
37220310 TACTGATGGCTGTGTGTCGATCATA-TCACTGCTACTGATGGCTTTGTACCGATCAT-GTTACCA
1 TACTGATGGCTGTGTGTCGATCATAGT-ACTGCTACTGATGGCTTTGTACCGATCATAG-TA-CA
* *
37220373 -TTACTGATGG-TTGTGTGCCGATCATA-TCACTGCTACTGATGGCTTTGTGCCAATCA
63 GTTACTAATGGCTT-TGTGCCGATCATAGT-ACCGCTACTGATGGCTTTGTGCCAATCA
37220429 CATTACTGTA
Statistics
Matches: 105, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
129 5 0.05
130 98 0.93
131 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.38
Consensus pattern (130 bp):
TACTGATGGCTGTGTGTCGATCATAGTACTGCTACTGATGGCTTTGTACCGATCATAGTACAGTT
ACTAATGGCTTTGTGCCGATCATAGTACCGCTACTGATGGCTTTGTGCCAATCATATTTCACTGT
Found at i:37220582 original size:26 final size:26
Alignment explanation
Indices: 37220505--37220569 Score: 103
Period size: 26 Copynumber: 2.5 Consensus size: 26
37220495 AGCCATTTTG
37220505 ACTACTGGCAGCTCTACTGCATTATT
1 ACTACTGGCAGCTCTACTGCATTATT
* * *
37220531 ACTATTGGGAGCTCTACTACATTATT
1 ACTACTGGCAGCTCTACTGCATTATT
37220557 ACTACTGGCAGCT
1 ACTACTGGCAGCT
37220570 ATGCTGCGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (26 bp):
ACTACTGGCAGCTCTACTGCATTATT
Found at i:37225084 original size:70 final size:70
Alignment explanation
Indices: 37225010--37225422 Score: 333
Period size: 70 Copynumber: 5.9 Consensus size: 70
37225000 GGATAGACCA
* * * * * * * *
37225010 ACGAATAATGTGTACAACATTAGTCGAATAATCCACAATGTTTTGCACCCAGCGCTTGTCGGATA
1 ACGAATAGTGTGTCCAGCACTAGTCGAATAATCGATAATGTTTTGCACCCAGCGCTAGTCAGATA
37225075 AATCG
66 AATCG
* * * * * * *
37225080 ACGAATAATGT-TCCCCA-TATTAGTCGAATAGTCGATAATGTTTTGC-GCTAGGTGCTAGTCAG
1 ACGAATAGTGTGT--CCAGCACTAGTCGAATAATCGATAATGTTTTGCACCCA-GCGCTAGTCAG
37225142 ATAAATCG
63 ATAAATCG
* * * * * * *
37225150 AGGAGTAGTGTGCCCAGCACTAGTCGAATAATCGATAATGTTTTACGCCCAACGCTAGTCTGATA
1 ACGAATAGTGTGTCCAGCACTAGTCGAATAATCGATAATGTTTTGCACCCAGCGCTAGTCAGATA
37225215 AA-CTG
66 AATC-G
* ** * *
37225220 A-G--TAGTGTGTCCAGCACTAGTCGTATAATTAACAATGTTTTGCACCCAGCACTAGTC-GAAT
1 ACGAATAGTGTGTCCAGCACTAGTCGAATAATCGATAATGTTTTGCACCCAGCGCTAGTCAG-AT
37225281 AAA-CTG
65 AAATC-G
* * * * * *
37225287 ACGAATAGTGTGCCCCGCACTAGTTGAATAATTGATAATGTTTTGCGCCCATCGCTAGTCAGATA
1 ACGAATAGTGTGTCCAGCACTAGTCGAATAATCGATAATGTTTTGCACCCAGCGCTAGTCAGATA
37225352 AATCG
66 AATCG
* * * * * * *
37225357 ATGAATAGTGT-CCCTAGCACTAGTCGAATAATCGAAAATTTTTTACGCCCAGCGCTATTCAGAT
1 ACGAATAGTGTGTCC-AGCACTAGTCGAATAATCGATAATGTTTTGCACCCAGCGCTAGTCAGAT
37225421 AA
65 AA
37225423 CCGAAAATAT
Statistics
Matches: 279, Mismatches: 50, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
66 1 0.00
67 55 0.20
68 1 0.00
69 11 0.04
70 205 0.73
71 6 0.02
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (70 bp):
ACGAATAGTGTGTCCAGCACTAGTCGAATAATCGATAATGTTTTGCACCCAGCGCTAGTCAGATA
AATCG
Found at i:37225200 original size:35 final size:34
Alignment explanation
Indices: 37225161--37225409 Score: 104
Period size: 35 Copynumber: 7.2 Consensus size: 34
37225151 GGAGTAGTGT
37225161 GCCCAGCACTAGTCGAATAATCGATAATGTTTTAC
1 GCCCAGCACTAGTCGAATAATCGATAATGTTTT-C
* * * *
37225196 GCCCAACGCTAGTCTG-ATAAACTGAGT-A-G-TGT-
1 GCCCAGCACTAGTC-GAATAATC-GA-TAATGTTTTC
* * ** *
37225228 GTCCAGCACTAGTCGTATAATTAACAATGTTTTGC
1 GCCCAGCACTAGTCGAATAATCGATAATGTTTT-C
* * * *
37225263 ACCCAGCACTAGTCGAATAAACTGACGAATAG-TGT-
1 GCCCAGCACTAGTCGAATAATC-GA-TAAT-GTTTTC
* * *
37225298 GCCCCGCACTAGTTGAATAATTGATAATGTTTTGC
1 GCCCAGCACTAGTCGAATAATCGATAATGTTTT-C
* * *
37225333 GCCCATCGCTAGTC-AGATAAATCGATGAATAG-TGTC
1 GCCCAGCACTAGTCGA-AT-AATCGAT-AAT-GTTTTC
* * *
37225369 -CCTAGCACTAGTCGAATAATCGAAAATTTTTTAC
1 GCCCAGCACTAGTCGAATAATCGATAATGTTTT-C
37225403 GCCCAGC
1 GCCCAGC
37225410 GCTATTCAGA
Statistics
Matches: 151, Mismatches: 40, Indels: 46
0.64 0.17 0.19
Matches are distributed among these distances:
31 3 0.02
32 17 0.11
33 12 0.08
34 12 0.08
35 81 0.54
36 13 0.09
37 11 0.07
38 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (34 bp):
GCCCAGCACTAGTCGAATAATCGATAATGTTTTC
Found at i:37225403 original size:207 final size:206
Alignment explanation
Indices: 37225030--37225422 Score: 522
Period size: 207 Copynumber: 1.9 Consensus size: 206
37225020 TGTACAACAT
* * * * *
37225030 TAGTCGAATAATCCACAATGTTTTGCACCCAGCGCTTGTCGGATAAATCGACGAATAATGTTCCC
1 TAGTCGAATAATCAACAATGTTTTGCACCCAGCACTAGTCGAATAAATCGACGAATAATGTGCCC
* * * * *
37225095 CATATTAGTCGAATAGTCGATAATGTTTTGCGCTAGGTGCTAGTCAGATAAATCGAGGAGTAGTG
66 CACACTAGTCGAATAATCGATAATGTTTTGCGCCA-GTGCTAGTCAGATAAATCGAGGAATAGTG
* *
37225160 TGCCCAGCACTAGTCGAATAATCGATAATGTTTTACGCCCAACGCTAGTCTGATAAACTGAGTAG
130 TGCCCAGCACTAGTCGAATAATCGAAAATGTTTTACGCCCAACGCTAGTCAGATAAACTGAGTAG
37225225 TGTGTCCAGCAC
195 TGTGTCCAGCAC
* * *
37225237 TAGTCGTATAATTAACAATGTTTTGCACCCAGCACTAGTCGAATAAA-CTGACGAATAGTGTGCC
1 TAGTCGAATAATCAACAATGTTTTGCACCCAGCACTAGTCGAATAAATC-GACGAATAATGTGCC
* * * *
37225301 CCGCACTAGTTGAATAATTGATAATGTTTTGCGCCCA-TCGCTAGTCAGATAAATCGATGAATAG
65 CCACACTAGTCGAATAATCGATAATGTTTTGCG-CCAGT-GCTAGTCAGATAAATCGAGGAATAG
* * *
37225365 TGT-CCCTAGCACTAGTCGAATAATCGAAAATTTTTTACGCCCAGCGCTATTCAGATAA
128 TGTGCCC-AGCACTAGTCGAATAATCGAAAATGTTTTACGCCCAACGCTAGTCAGATAA
37225423 CCGAAAATAT
Statistics
Matches: 160, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
206 5 0.03
207 153 0.96
208 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.28
Consensus pattern (206 bp):
TAGTCGAATAATCAACAATGTTTTGCACCCAGCACTAGTCGAATAAATCGACGAATAATGTGCCC
CACACTAGTCGAATAATCGATAATGTTTTGCGCCAGTGCTAGTCAGATAAATCGAGGAATAGTGT
GCCCAGCACTAGTCGAATAATCGAAAATGTTTTACGCCCAACGCTAGTCAGATAAACTGAGTAGT
GTGTCCAGCAC
Found at i:37225481 original size:20 final size:20
Alignment explanation
Indices: 37225456--37225498 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
37225446 CCAAATCCAT
37225456 AATATCACATTTCATAACTC
1 AATATCACATTTCATAACTC
* *
37225476 AATATCATATTTCATAATTC
1 AATATCACATTTCATAACTC
37225496 AAT
1 AAT
37225499 GTAACATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.40
Consensus pattern (20 bp):
AATATCACATTTCATAACTC
Found at i:37225507 original size:20 final size:20
Alignment explanation
Indices: 37225456--37225507 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
37225446 CCAAATCCAT
*
37225456 AATATCACATTTCATAACTC
1 AATATAACATTTCATAACTC
* * *
37225476 AATATCATATTTCATAATTC
1 AATATAACATTTCATAACTC
*
37225496 AATGTAACATTT
1 AATATAACATTT
37225508 ACTTCAATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.40
Consensus pattern (20 bp):
AATATAACATTTCATAACTC
Found at i:37228861 original size:40 final size:40
Alignment explanation
Indices: 37228798--37229097 Score: 211
Period size: 40 Copynumber: 7.5 Consensus size: 40
37228788 GAGTCTAAAC
** * *
37228798 AAGGGCACGTAACTGC-ATTAAGGGGATCGAAGTACAAAT
1 AAGGGCACGTATGTGCAATCAAGGGTATCGAAGTACAAAT
* * * * *
37228837 AGGGGCATGTATGTGCAATCAAGGGTACCGACGTACAAAC
1 AAGGGCACGTATGTGCAATCAAGGGTATCGAAGTACAAAT
* * * *
37228877 AAGGGCACATATGTGCAAT-TA-GGCATACCATAGTACAAAT
1 AAGGGCACGTATGTGCAATCAAGGGTAT-CGA-AGTACAAAT
* *
37228917 AAGGGTACGTATGTGCAATCAAGGGTATC-AACGTACAAAC
1 AAGGGCACGTATGTGCAATCAAGGGTATCGAA-GTACAAAT
* * * *
37228957 AGGGGCACGTATGTGCAATC-A-GGCATACCATAGTATAAAT
1 AAGGGCACGTATGTGCAATCAAGGGTAT-CGA-AGTACAAAT
* ** ** * *
37228997 AAGGGCATGCCTGCACAA-CCAGAGGTA-CTGAAGTACAAAC
1 AAGGGCACGTATGTGCAATCAAG-GGTATC-GAAGTACAAAT
* * *
37229037 AAGGGCACATATGTGCAATCAAGGGTACCGAAGTAAAAAT
1 AAGGGCACGTATGTGCAATCAAGGGTATCGAAGTACAAAT
*
37229077 AGGGGCACGTATGTGCAATCA
1 AAGGGCACGTATGTGCAATCA
37229098 TCAATAATTA
Statistics
Matches: 197, Mismatches: 49, Indels: 29
0.72 0.18 0.11
Matches are distributed among these distances:
38 7 0.04
39 19 0.10
40 156 0.79
41 8 0.04
42 7 0.04
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.19
Consensus pattern (40 bp):
AAGGGCACGTATGTGCAATCAAGGGTATCGAAGTACAAAT
Found at i:37228929 original size:80 final size:80
Alignment explanation
Indices: 37228828--37229097 Score: 303
Period size: 80 Copynumber: 3.4 Consensus size: 80
37228818 AGGGGATCGA
* *
37228828 AGTACAAATAGGGGCATGTATGTGCAATCAAGGGTACCGACGTACAAACAAGGGCACATATGTGC
1 AGTACAAATAAGGGCACGTATGTGCAATCAAGGGTACCGACGTACAAACAAGGGCACATATGTGC
*
37228893 AATTAGGCATACCAT
66 AATAAGGCATACCAT
* * * * *
37228908 AGTACAAATAAGGGTACGTATGTGCAATCAAGGGTATCAACGTACAAACAGGGGCACGTATGTGC
1 AGTACAAATAAGGGCACGTATGTGCAATCAAGGGTACCGACGTACAAACAAGGGCACATATGTGC
*
37228973 AATCAGGCATACCAT
66 AATAAGGCATACCAT
* * ** ** * * *
37228988 AGTATAAATAAGGGCATGCCTGCACAA-CCAGAGGTACTGAAGTACAAACAAGGGCACATATGTG
1 AGTACAAATAAGGGCACGTATGTGCAATCAAG-GGTACCGACGTACAAACAAGGGCACATATGTG
*
37229052 CAATCAAGG-GTACCGA-
65 CAAT-AAGGCATACC-AT
* *
37229068 AGTAAAAATAGGGGCACGTATGTGCAATCA
1 AGTACAAATAAGGGCACGTATGTGCAATCA
37229098 TCAATAATTA
Statistics
Matches: 154, Mismatches: 32, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
79 3 0.02
80 146 0.95
81 5 0.03
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (80 bp):
AGTACAAATAAGGGCACGTATGTGCAATCAAGGGTACCGACGTACAAACAAGGGCACATATGTGC
AATAAGGCATACCAT
Found at i:37231245 original size:29 final size:29
Alignment explanation
Indices: 37231182--37231249 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
37231172 TAATCAACCG
*
37231182 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
37231211 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
37231240 CGCACACTTA
1 CGCACACTTA
37231250 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:37231362 original size:174 final size:174
Alignment explanation
Indices: 37231071--37231398 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
37231061 AACTCAAGGT
* * *
37231071 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
*
37231136 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
37231201 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
37231245 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
37231310 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
*
37231375 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
37231399 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:37231390 original size:29 final size:30
Alignment explanation
Indices: 37231351--37231429 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
37231341 CTTAATAATC
37231351 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
37231381 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
37231410 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
37231430 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:37239118 original size:40 final size:40
Alignment explanation
Indices: 37239074--37239335 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
37239064 GCTCCTCGTT
* *
37239074 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
37239114 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37239154 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37239193 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37239232 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
37239271 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
37239312 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37239336 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:37248337 original size:40 final size:40
Alignment explanation
Indices: 37248255--37248404 Score: 158
Period size: 40 Copynumber: 3.8 Consensus size: 40
37248245 AGGGTTACAG
* * ** **
37248255 AGTATAAACAAGGGCACGTAAGTGC-ATTTAGAGGTATTGA
1 AGTACAAACAAGGGCACGTATGTGCAATCAAG-GGTACCGA
* *
37248295 AGTACAAACAAGAGCATGTATGTGCAATCAAGGGTACCGA
1 AGTACAAACAAGGGCACGTATGTGCAATCAAGGGTACCGA
* * * *
37248335 AGTACAAATAGGGGCACGTATGTGCAATCAGGGGTACCAA
1 AGTACAAACAAGGGCACGTATGTGCAATCAAGGGTACCGA
* *
37248375 AGTACAAACAAGGGAACGTATGTACAATCA
1 AGTACAAACAAGGGCACGTATGTGCAATCA
37248405 TCAATAATTA
Statistics
Matches: 91, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
40 87 0.96
41 4 0.04
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.19
Consensus pattern (40 bp):
AGTACAAACAAGGGCACGTATGTGCAATCAAGGGTACCGA
Found at i:37251731 original size:24 final size:25
Alignment explanation
Indices: 37251694--37251740 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
37251684 ACTGGTCATA
*
37251694 GAGAGAATTAAGGA-AGGATATTCG
1 GAGAGAATTAAGGAGAGAATATTCG
* *
37251718 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTAAGGAGAGAATATT
37251741 GGGATTTGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.40, C:0.02, G:0.34, T:0.23
Consensus pattern (25 bp):
GAGAGAATTAAGGAGAGAATATTCG
Found at i:37252402 original size:26 final size:27
Alignment explanation
Indices: 37252372--37252432 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
37252362 GAGAGGTCAA
*
37252372 AAAAAGACCAAATTACCCCCGAAGGGT
1 AAAATGACCAAATTACCCCCGAAGGGT
** *
37252399 AAAATGACTGAATTACCCCCTAAGGGT
1 AAAATGACCAAATTACCCCCGAAGGGT
37252426 AAAATGA
1 AAAATGA
37252433 TTGAATTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.16
Consensus pattern (27 bp):
AAAATGACCAAATTACCCCCGAAGGGT
Found at i:37252430 original size:27 final size:27
Alignment explanation
Indices: 37252382--37252492 Score: 119
Period size: 27 Copynumber: 4.3 Consensus size: 27
37252372 AAAAAGACCA
*
37252382 AATTACCCCCGAAGGGTAAAATGACTG
1 AATTACCCCCTAAGGGTAAAATGACTG
*
37252409 AATTACCCCCTAAGGGTAAAATGATTG
1 AATTACCCCCTAAGGGTAAAATGACTG
37252436 AATT------TAAGGGTAAAAATGA-TCG
1 AATTACCCCCTAAGGGT-AAAATGACT-G
* *
37252458 AATTACCCCCAAAGGATAAAATGACTG
1 AATTACCCCCTAAGGGTAAAATGACTG
37252485 AATTACCC
1 AATTACCC
37252493 TTGAAAGGTG
Statistics
Matches: 71, Mismatches: 4, Indels: 18
0.76 0.04 0.19
Matches are distributed among these distances:
21 8 0.11
22 12 0.17
27 45 0.63
28 6 0.08
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.23
Consensus pattern (27 bp):
AATTACCCCCTAAGGGTAAAATGACTG
Found at i:37252445 original size:21 final size:22
Alignment explanation
Indices: 37252419--37252461 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
37252409 AATTACCCCC
*
37252419 TAAGGGT-AAAATGATTGAATT
1 TAAGGGTAAAAATGATCGAATT
37252440 TAAGGGTAAAAATGATCGAATT
1 TAAGGGTAAAAATGATCGAATT
37252462 ACCCCCAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.44, C:0.02, G:0.23, T:0.30
Consensus pattern (22 bp):
TAAGGGTAAAAATGATCGAATT
Found at i:37252464 original size:49 final size:48
Alignment explanation
Indices: 37252393--37252488 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 48
37252383 ATTACCCCCG
* * *
37252393 AAGGGTAAAATGACTGAATTACCCCCTAAGGGTAAAATGATTGAATTT
1 AAGGGTAAAATGACTGAATTACCCCCAAAGGATAAAATGACTGAATTT
37252441 AAGGGTAAAAATGA-TCGAATTACCCCCAAAGGATAAAATGACTGAATT
1 AAGGGT-AAAATGACT-GAATTACCCCCAAAGGATAAAATGACTGAATT
37252489 ACCCTTGAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
48 7 0.16
49 36 0.84
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.24
Consensus pattern (48 bp):
AAGGGTAAAATGACTGAATTACCCCCAAAGGATAAAATGACTGAATTT
Found at i:37252738 original size:26 final size:26
Alignment explanation
Indices: 37252697--37252780 Score: 96
Period size: 26 Copynumber: 3.2 Consensus size: 26
37252687 GTACTTGTGG
* *
37252697 CTTTGCCACATATACTGTTACTGGTAA
1 CTTTGCTACA-ATACTGTTACTGGCAA
* * *
37252724 CTTTGCTGCATTACTGTTACTTGCAA
1 CTTTGCTACAATACTGTTACTGGCAA
* *
37252750 CTTTGCTACAATACTATTACTGGCAG
1 CTTTGCTACAATACTGTTACTGGCAA
37252776 CTTTG
1 CTTTG
37252781 TTGCAATATT
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 39 0.83
27 8 0.17
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (26 bp):
CTTTGCTACAATACTGTTACTGGCAA
Found at i:37252787 original size:26 final size:26
Alignment explanation
Indices: 37252708--37252788 Score: 99
Period size: 26 Copynumber: 3.1 Consensus size: 26
37252698 TTTGCCACAT
*
37252708 ATACTGTTACTGGTAACTTTGCTGCA
1 ATACTGTTACTGGCAACTTTGCTGCA
* * *
37252734 TTACTGTTACTTGCAACTTTGCTACA
1 ATACTGTTACTGGCAACTTTGCTGCA
* * *
37252760 ATACTATTACTGGCAGCTTTGTTGCA
1 ATACTGTTACTGGCAACTTTGCTGCA
37252786 ATA
1 ATA
37252789 TTAGTGTGTT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.40
Consensus pattern (26 bp):
ATACTGTTACTGGCAACTTTGCTGCA
Found at i:37252935 original size:28 final size:28
Alignment explanation
Indices: 37252895--37252984 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 28
37252885 AATTGTATTA
* * *
37252895 TTACTGTTTTGGGCTAGGGCCCACACTAT
1 TTACTGTATTGGGCTAAGGCCCACACT-G
37252924 TTA-TGTATTGGGCTAAGGCCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
* * *
37252951 TTACTGTATCGGCCTAAGGCCCACATTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
37252979 -TACTGT
1 TTACTGT
37252985 TACTGAATAG
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
27 9 0.17
28 42 0.78
29 3 0.06
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCACACTG
Found at i:37255189 original size:27 final size:27
Alignment explanation
Indices: 37255125--37255293 Score: 198
Period size: 27 Copynumber: 6.3 Consensus size: 27
37255115 GAGAGGTCAA
** *
37255125 AAAATGATTGAATTACCCCTGAAAGGGT
1 AAAATGACCGAATTACCCCCGAAA-GGT
37255153 AAAATGACCGAATTACCCCCGAAAGGT
1 AAAATGACCGAATTACCCCCGAAAGGT
*
37255180 AAAATAACCGAATTACCCCC-AAAGGTT
1 AAAATGACCGAATTACCCCCGAAAGG-T
*
37255207 AAAATGACCGAATTA-CCCCGAAGGGT
1 AAAATGACCGAATTACCCCCGAAAGGT
** *
37255233 AAAATGATGGAATTACCCCCGAAGGGT
1 AAAATGACCGAATTACCCCCGAAAGGT
* ** *
37255260 AAAATGACTGAATTACCCTTGAAGGGT
1 AAAATGACCGAATTACCCCCGAAAGGT
37255287 AAAATGA
1 AAAATGA
37255294 TTGTTATACC
Statistics
Matches: 126, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
26 23 0.18
27 82 0.65
28 21 0.17
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (27 bp):
AAAATGACCGAATTACCCCCGAAAGGT
Found at i:37255305 original size:54 final size:53
Alignment explanation
Indices: 37255125--37255296 Score: 227
Period size: 53 Copynumber: 3.2 Consensus size: 53
37255115 GAGAGGTCAA
* *
37255125 AAAATGATTGAATTACCCCTGAAAGGGTAAAATGACCGAATTACCCCCGAAAGGT
1 AAAATGATTGAATTACCCCCG-AAGGGTAAAATGACCGAATTA-CCCCGAAGGGT
* ** * *
37255180 AAAATAACCGAATTACCCCCAAAGGTTAAAATGACCGAATTACCCCGAAGGGT
1 AAAATGATTGAATTACCCCCGAAGGGTAAAATGACCGAATTACCCCGAAGGGT
* * *
37255233 AAAATGATGGAATTACCCCCGAAGGGTAAAATGACTGAATTACCCTTGAAGGGT
1 AAAATGATTGAATTACCCCCGAAGGGTAAAATGACCGAATTACCC-CGAAGGGT
37255287 AAAATGATTG
1 AAAATGATTG
37255297 TTATACCCCT
Statistics
Matches: 101, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
53 49 0.49
54 36 0.36
55 16 0.16
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.20
Consensus pattern (53 bp):
AAAATGATTGAATTACCCCCGAAGGGTAAAATGACCGAATTACCCCGAAGGGT
Found at i:37255305 original size:80 final size:82
Alignment explanation
Indices: 37255125--37255296 Score: 231
Period size: 80 Copynumber: 2.1 Consensus size: 82
37255115 GAGAGGTCAA
37255125 AAAATGATTGAATTACCCCTGAAAGGGTAAAATGACCGAATTACCCCCGAAAGGTAAAATAACCG
1 AAAATGATTGAATTACCCCTGAAAGGGTAAAATGACCGAATTACCCCCGAAAGGTAAAATAACCG
*
37255190 AATTACCCCCAAAGGTT
66 AATTACCCCCAAAGGGT
** ** * * *
37255207 AAAATGACCGAATTACCCC-G-AAGGGTAAAATGATGGAATTACCCCCGAAGGGTAAAATGACTG
1 AAAATGATTGAATTACCCCTGAAAGGGTAAAATGACCGAATTACCCCCGAAAGGTAAAATAACCG
***
37255270 AATTACCCTTGAAGGGT
66 AATTACCCCCAAAGGGT
37255287 AAAATGATTG
1 AAAATGATTG
37255297 TTATACCCCT
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 59 0.77
81 1 0.01
82 17 0.22
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.20
Consensus pattern (82 bp):
AAAATGATTGAATTACCCCTGAAAGGGTAAAATGACCGAATTACCCCCGAAAGGTAAAATAACCG
AATTACCCCCAAAGGGT
Found at i:37255677 original size:28 final size:28
Alignment explanation
Indices: 37255625--37255718 Score: 120
Period size: 28 Copynumber: 3.4 Consensus size: 28
37255615 ACTGCATTGT
* *
37255625 ACTGTTACTGTTTTGGGCTAGGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
* *
37255653 ACTATTTA-TGTATTGGGCTAAGGCCTAC
1 ACT-GTTACTGTATTGGGCTAAGGCCCAC
*
37255681 ACTGTTACTGTATCGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
37255709 ACTG-TACTGT
1 ACTGTTACTGT
37255719 TACTGAATAG
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
27 9 0.16
28 45 0.79
29 3 0.05
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.32
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCCAC
Found at i:37255746 original size:33 final size:34
Alignment explanation
Indices: 37255681--37255751 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
37255671 TAAGGCCTAC
* *
37255681 ACTGTTACTGTATCGGGCTAAGGCCCACACTG-T
1 ACTGTTACTGAATAGGGCTAAGGCCCACACTGTT
* * *
37255714 ACTGTTACTGAATAGGGCTCAGGCCTAGACTGTT
1 ACTGTTACTGAATAGGGCTAAGGCCCACACTGTT
37255748 ACTG
1 ACTG
37255752 CATGTTGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 27 0.84
34 5 0.16
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (34 bp):
ACTGTTACTGAATAGGGCTAAGGCCCACACTGTT
Found at i:37255747 original size:61 final size:56
Alignment explanation
Indices: 37255625--37255751 Score: 146
Period size: 56 Copynumber: 2.2 Consensus size: 56
37255615 ACTGCATTGT
* * * * *
37255625 ACTGTTACTGTTTTGGGCTAGGGCCCACACTATTTATGTATTGGGCTAAGGCCTAC
1 ACTGTTACTGTATCGGGCTAAGGCCCACACTATTTATGAATAGGGCTAAGGCCTAC
* *
37255681 ACTGTTACTGTATCGGGCTAAGGCCCACACTGTACTGTTACTGAATAGGGCTCAGGCCTAG
1 ACTGTTACTGTATCGGGCTAAGGCCCACAC--TA-T-TTA-TGAATAGGGCTAAGGCCTAC
37255742 ACTGTTACTG
1 ACTGTTACTG
37255752 CATGTTGTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
56 27 0.46
58 2 0.03
59 1 0.02
60 3 0.05
61 26 0.44
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (56 bp):
ACTGTTACTGTATCGGGCTAAGGCCCACACTATTTATGAATAGGGCTAAGGCCTAC
Found at i:37267503 original size:28 final size:28
Alignment explanation
Indices: 37267471--37267559 Score: 90
Period size: 28 Copynumber: 3.1 Consensus size: 28
37267461 ATGACCATGC
*
37267471 ACCACCATTTTAAAGATTTTACAATTTT
1 ACCACTATTTTAAAGATTTTACAATTTT
* * *
37267499 ACCACTGTATTTTTAA-ATTTTACAGTTCT
1 ACCAC--TATTTTAAAGATTTTACAATTTT
* **
37267528 GCCACTATTTTCTAGATTTTACAATTTT
1 ACCACTATTTTAAAGATTTTACAATTTT
37267556 ACCA
1 ACCA
37267560 TTGGTTTTCC
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
27 7 0.15
28 19 0.40
29 15 0.31
30 7 0.15
ACGTcount: A:0.30, C:0.19, G:0.06, T:0.45
Consensus pattern (28 bp):
ACCACTATTTTAAAGATTTTACAATTTT
Done.