Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 125 of 187
Found at i:37267576 original size:57 final size:57
Alignment explanation
Indices: 37267484--37267593 Score: 141
Period size: 57 Copynumber: 1.9 Consensus size: 57
37267474 ACCATTTTAA
**
37267484 AGATTTTACAATTTTACCACTGTATTTTTAAATTTTACAGTTCTGCCACTATTTTCT
1 AGATTTTACAATTTTACCACTGTATTTCCAAATTTTACAGTTCTGCCACTATTTTCT
* * * * *
37267541 AGATTTTACAATTTTACCATTGGT-TTTCCAGATTTTATAGTTTTGCCATTATT
1 AGATTTTACAATTTTACCACT-GTATTTCCAAATTTTACAGTTCTGCCACTATT
37267594 CAGTCCCTGA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
57 43 0.96
58 2 0.04
ACGTcount: A:0.25, C:0.15, G:0.09, T:0.50
Consensus pattern (57 bp):
AGATTTTACAATTTTACCACTGTATTTCCAAATTTTACAGTTCTGCCACTATTTTCT
Found at i:37268520 original size:36 final size:36
Alignment explanation
Indices: 37268477--37268549 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
37268467 TTGAAGTAGC
37268477 AAACCCATTTTATCGTATTGAAATAATTGATATGCG
1 AAACCCATTTTATCGTATTGAAATAATTGATATGCG
*
37268513 AAACCCATTTTATCGTATTGAAATGATTGATATGCG
1 AAACCCATTTTATCGTATTGAAATAATTGATATGCG
37268549 A
1 A
37268550 GACTGTTTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.36
Consensus pattern (36 bp):
AAACCCATTTTATCGTATTGAAATAATTGATATGCG
Found at i:37275039 original size:49 final size:48
Alignment explanation
Indices: 37274854--37275040 Score: 126
Period size: 50 Copynumber: 3.8 Consensus size: 48
37274844 GGGTAAAGAG
* * * *
37274854 ATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTAAGATGAGAG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAGTAA-A-GAAAC
* ** * * * *
37274904 GTCCCCCGTAAGACCATGTCTAGGACAAGGCATCGGCACCG-ATATGAGAAC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA--GTA-AAGA-AAC
* ** * **
37274955 -TCCCTTGTAAGACCATACCTGGGATATGAAATTGGCAGTACAAGAAAC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAGTA-AAGAAAC
* *
37275003 ATCCCATGTAAGACCATGTCTGGGATATGGCTTTGGCA
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37275041 TGTTATTATC
Statistics
Matches: 102, Mismatches: 29, Indels: 13
0.71 0.20 0.09
Matches are distributed among these distances:
48 4 0.04
49 35 0.34
50 60 0.59
51 2 0.02
52 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (48 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAGTAAAGAAAC
Found at i:37287483 original size:26 final size:27
Alignment explanation
Indices: 37287413--37287484 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
37287403 TCCAAACTGA
37287413 TATAAAATGACTGTTATGCCCCCACGT
1 TATAAAATGACTGTTATGCCCCCACGT
** * *
37287440 GGTAAAATGACTGTTATGCCCCTATGT
1 TATAAAATGACTGTTATGCCCCCACGT
*
37287467 TATAAAATGATTG-TATGC
1 TATAAAATGACTGTTATGC
37287485 TCTATGCATG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 5 0.13
27 33 0.87
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (27 bp):
TATAAAATGACTGTTATGCCCCCACGT
Found at i:37289749 original size:31 final size:32
Alignment explanation
Indices: 37289703--37289824 Score: 93
Period size: 31 Copynumber: 3.6 Consensus size: 32
37289693 ATTATTTTTA
* *
37289703 AAATATAATTTAAATATAAAATATA-AAATTT
1 AAATATTATTAAAATATAAAATATATAAATTT
* * *
37289734 GAATATTATTAAAATATAACATTTATAAATTT
1 AAATATTATTAAAATATAAAATATATAAATTT
* * *
37289766 AAATATATATTTAAAATAATTTAATTATATACTTAATAT
1 AAATAT-TA-TTAAAAT-A--TAA-AATATA-TAAATTT
37289805 AAATATTATATAAAATATAA
1 AAATATTAT-TAAAATATAA
37289825 TTTATAAAAT
Statistics
Matches: 72, Mismatches: 10, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
31 20 0.28
32 11 0.15
33 2 0.03
34 7 0.10
35 4 0.06
37 5 0.07
38 12 0.17
39 11 0.15
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.42
Consensus pattern (32 bp):
AAATATTATTAAAATATAAAATATATAAATTT
Found at i:37289786 original size:22 final size:22
Alignment explanation
Indices: 37289761--37289806 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
37289751 AACATTTATA
*
37289761 AATTTAAATATATATTTAAAAT
1 AATTTAAATATATACTTAAAAT
* *
37289783 AATTTAATTATATACTTAATAT
1 AATTTAAATATATACTTAAAAT
37289805 AA
1 AA
37289807 ATATTATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
AATTTAAATATATACTTAAAAT
Found at i:37289789 original size:10 final size:11
Alignment explanation
Indices: 37289703--37289794 Score: 54
Period size: 11 Copynumber: 8.6 Consensus size: 11
37289693 ATTATTTTTA
37289703 AAATATAATTT
1 AAATATAATTT
37289714 AAATATAA---
1 AAATATAATTT
*
37289722 AATATAAAATTT
1 AA-ATATAATTT
* * *
37289734 GAATATTATTA
1 AAATATAATTT
37289745 AAATATAACATTT
1 AAATAT-A-ATTT
37289758 --ATA-AATTT
1 AAATATAATTT
37289766 AAATATATATTT
1 AAATATA-ATTT
37289778 AAA-ATAATTT
1 AAATATAATTT
*
37289788 AATTATA
1 AAATATA
37289795 TACTTAATAT
Statistics
Matches: 61, Mismatches: 9, Indels: 22
0.66 0.10 0.24
Matches are distributed among these distances:
8 6 0.10
9 6 0.10
10 9 0.15
11 29 0.48
12 8 0.13
13 3 0.05
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (11 bp):
AAATATAATTT
Found at i:37292577 original size:21 final size:21
Alignment explanation
Indices: 37292539--37292579 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37292529 GTAGGAGTTA
*
37292539 ATTTAATTTCTTTGAATTAAT
1 ATTTAATTTATTTGAATTAAT
37292560 ATTTAATTTA-TTGTAATTAA
1 ATTTAATTTATTTG-AATTAA
37292580 ATAAATGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (21 bp):
ATTTAATTTATTTGAATTAAT
Found at i:37292938 original size:9 final size:9
Alignment explanation
Indices: 37292922--37292963 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
37292912 AAGTTAAACG
37292922 AATCGAGTT
1 AATCGAGTT
*
37292931 ATTCGAGTT
1 AATCGAGTT
37292940 AATCGAGTT
1 AATCGAGTT
37292949 AATCGAGTT
1 AATCGAGTT
*
37292958 ATTCGA
1 AATCGA
37292964 ATCAACTCGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (9 bp):
AATCGAGTT
Found at i:37296078 original size:30 final size:28
Alignment explanation
Indices: 37296038--37296093 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 28
37296028 TAAAGTAATT
37296038 AAATAAAAGAAAATA-AAAGAAATCAAACG
1 AAATAAAAGAAAA-AGAAAGAAA-CAAACG
37296067 AAATAAAAAGAAAAAGAAAGAAACAAA
1 AAAT-AAAAGAAAAAGAAAGAAACAAA
37296094 ACAGAAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.77, C:0.05, G:0.11, T:0.07
Consensus pattern (28 bp):
AAATAAAAGAAAAAGAAAGAAACAAACG
Found at i:37296812 original size:3 final size:3
Alignment explanation
Indices: 37296792--37296836 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
37296782 GTGAGGTAAG
* *
37296792 TAT TAA TAT TAG TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
37296837 AAGAGTTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:37296966 original size:37 final size:39
Alignment explanation
Indices: 37296907--37297002 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
37296897 CGGATAGATT
* * * *
37296907 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
37296944 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
37296983 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
37297003 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:37296986 original size:39 final size:38
Alignment explanation
Indices: 37296866--37296999 Score: 103
Period size: 39 Copynumber: 3.4 Consensus size: 38
37296856 GACCTCGAGT
* * *
37296866 CGATGAGACACTGGGTGTCACAATATTTCTTCGGATA-GATT
1 CGATGAGACACTGGGTGTCA-ACTA-TTCTTC-GA-ACTATC
** ** * *
37296907 CGATGAGGTACTGGGTACCAACT-TTCTTCG-GCTTTGC
1 CGATGAGACACTGGGTGTCAACTATTCTTCGAACTAT-C
37296944 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGACACTGGGTGTCAACTATT-CTTCGAACTATC
*
37296983 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
37297000 CCATTCTGGT
Statistics
Matches: 72, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
36 1 0.01
37 20 0.28
38 8 0.11
39 22 0.31
40 5 0.07
41 16 0.22
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (38 bp):
CGATGAGACACTGGGTGTCAACTATTCTTCGAACTATC
Found at i:37302108 original size:30 final size:28
Alignment explanation
Indices: 37302068--37302123 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 28
37302058 TAAAGTAATT
37302068 AAATAAAAGAAAATA-AAAGAAATCAAACC
1 AAATAAAAGAAAA-AGAAAGAAA-CAAACC
37302097 AAATAAAAAGAAAAAGAAAGAAACAAA
1 AAAT-AAAAGAAAAAGAAAGAAACAAA
37302124 ACAGAAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.77, C:0.07, G:0.09, T:0.07
Consensus pattern (28 bp):
AAATAAAAGAAAAAGAAAGAAACAAACC
Found at i:37302807 original size:39 final size:38
Alignment explanation
Indices: 37302687--37302821 Score: 96
Period size: 39 Copynumber: 3.5 Consensus size: 38
37302677 GACCTCGAGT
* * *
37302687 CGATGAGACATTGGGTGTCACAATATTTCTTCGGATA-TATT
1 CGATGAGACACTGGGTGTCA-ACTA-TTCTTC-GA-ACTATC
** ** * *
37302728 CGATGAGGTACTGGGTACCAACT-TTCTTCG-GCTTTGC
1 CGATGAGACACTGGGTGTCAACTATTCTTCGAACTAT-C
37302765 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGACACTGGGTGTCAACTATT-CTTCGAACTATC
* *
37302804 CGATGAGGCATTGGGTGT
1 CGATGAGACACTGGGTGT
37302822 ACAGTCGTTT
Statistics
Matches: 72, Mismatches: 17, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
36 2 0.03
37 20 0.28
38 8 0.11
39 22 0.31
40 5 0.07
41 15 0.21
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (38 bp):
CGATGAGACACTGGGTGTCAACTATTCTTCGAACTATC
Found at i:37310774 original size:30 final size:30
Alignment explanation
Indices: 37310740--37310796 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
37310730 CACGGCTGAG
* * *
37310740 ACACACGGCCGTGTCACCTGCCCGTGTGTC
1 ACACACGGCCGGGACACATGCCCGTGTGTC
*
37310770 ACACACGGCTGGGACACATGCCCGTGT
1 ACACACGGCCGGGACACATGCCCGTGT
37310797 CTCTACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.18, C:0.37, G:0.28, T:0.18
Consensus pattern (30 bp):
ACACACGGCCGGGACACATGCCCGTGTGTC
Found at i:37310780 original size:43 final size:42
Alignment explanation
Indices: 37310697--37310797 Score: 141
Period size: 43 Copynumber: 2.4 Consensus size: 42
37310687 AGTATCAGGG
37310697 GACACATGGCCGTGTCACCTAGCGTGTGTAACACACGGCTGA
1 GACACATGGCCGTGTCACCTAGCGTGTGTAACACACGGCTGA
* * *
37310739 GACACACGGCCGTGTCACCT-GCCCGTGTGTCACACACGGCTGG
1 GACACATGGCCGTGTCACCTAG--CGTGTGTAACACACGGCTGA
*
37310782 GACACATGCCCGTGTC
1 GACACATGGCCGTGTC
37310798 TCTACTCATG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
41 1 0.02
42 19 0.37
43 32 0.62
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.18
Consensus pattern (42 bp):
GACACATGGCCGTGTCACCTAGCGTGTGTAACACACGGCTGA
Found at i:37313302 original size:17 final size:17
Alignment explanation
Indices: 37313280--37313313 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
37313270 TATACATGCT
37313280 TAACAAAAATTTGAGGC
1 TAACAAAAATTTGAGGC
*
37313297 TAACAAAAATTTTAGGC
1 TAACAAAAATTTGAGGC
37313314 AAATATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.12, G:0.15, T:0.26
Consensus pattern (17 bp):
TAACAAAAATTTGAGGC
Found at i:37318448 original size:15 final size:13
Alignment explanation
Indices: 37318417--37318447 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
37318407 TGAAATTAAA
37318417 ATATAAAAAATAT
1 ATATAAAAAATAT
*
37318430 ATATAAAAAATGT
1 ATATAAAAAATAT
37318443 ATATA
1 ATATA
37318448 TTTATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (13 bp):
ATATAAAAAATAT
Found at i:37321577 original size:22 final size:23
Alignment explanation
Indices: 37321546--37321621 Score: 81
Period size: 22 Copynumber: 3.4 Consensus size: 23
37321536 AACTAATCCT
37321546 TTCTCAAATTTCCTCTCAATTTC
1 TTCTCAAATTTCCTCTCAATTTC
37321569 TTCT-AAATTTCCTCTCAATTTGC
1 TTCTCAAATTTCCTCTCAATTT-C
*
37321592 -TCTTAAA-TTCCT-TCAAAATTTC
1 TTCTCAAATTTCCTCTC--AATTTC
37321614 -TCTCAAAT
1 TTCTCAAAT
37321622 CCATATTTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
21 2 0.04
22 32 0.68
23 13 0.28
ACGTcount: A:0.26, C:0.26, G:0.01, T:0.46
Consensus pattern (23 bp):
TTCTCAAATTTCCTCTCAATTTC
Found at i:37321621 original size:11 final size:12
Alignment explanation
Indices: 37321547--37321621 Score: 72
Period size: 11 Copynumber: 6.7 Consensus size: 12
37321537 ACTAATCCTT
37321547 TCTCAAATTTCC
1 TCTCAAATTTCC
*
37321559 TCTC-AATTTCT
1 TCTCAAATTTCC
37321570 TCT-AAATTTCC
1 TCTCAAATTTCC
*
37321581 TCTC-AATTTGC
1 TCTCAAATTTCC
*
37321592 TCTTAAA-TTCC
1 TCTCAAATTTCC
37321603 T-TCAAAATTT-C
1 TCTC-AAATTTCC
37321614 TCTCAAAT
1 TCTCAAAT
37321622 CCATATTTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 13
0.73 0.09 0.19
Matches are distributed among these distances:
10 1 0.02
11 40 0.78
12 10 0.20
ACGTcount: A:0.27, C:0.27, G:0.01, T:0.45
Consensus pattern (12 bp):
TCTCAAATTTCC
Found at i:37321645 original size:51 final size:51
Alignment explanation
Indices: 37321583--37321680 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
37321573 AAATTTCCTC
*
37321583 TCAATTTGCTCTTAAATTCCT-TCAAAATTTCTCTCAAATCCATATTTATTT
1 TCAATTTGCTCTCAAATTCCTCT-AAAATTTCTCTCAAATCCATATTTATTT
* * * * *
37321634 TCAATTTGCTCTCAAGTTCCTCTTATATTTCTCTTAAATCCCTATTT
1 TCAATTTGCTCTCAAATTCCTCTAAAATTTCTCTCAAATCCATATTT
37321681 TTAAATAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
51 39 0.98
52 1 0.03
ACGTcount: A:0.26, C:0.23, G:0.03, T:0.48
Consensus pattern (51 bp):
TCAATTTGCTCTCAAATTCCTCTAAAATTTCTCTCAAATCCATATTTATTT
Found at i:37322836 original size:7 final size:7
Alignment explanation
Indices: 37322824--37322856 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
37322814 TAGTCGATTG
37322824 GTATTTA
1 GTATTTA
37322831 GTATTTA
1 GTATTTA
37322838 GTATTTA
1 GTATTTA
37322845 GTATTTA
1 GTATTTA
37322852 GTATT
1 GTATT
37322857 ATGTATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:37323504 original size:18 final size:18
Alignment explanation
Indices: 37323477--37323516 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37323467 CAGGTGCGTT
* *
37323477 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
37323495 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
37323513 TCCT
1 TCCT
37323517 TTTTCGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:37324085 original size:22 final size:22
Alignment explanation
Indices: 37324060--37324785 Score: 686
Period size: 21 Copynumber: 33.0 Consensus size: 22
37324050 TTTAATTGAC
* *
37324060 AAACCTTAAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
37324082 AAACCCT-AACCCTTAACTT-A
1 AAACCCTAAACCCTTAACTTAA
*
37324102 AAACCACTAAACCCTTAACCTAA
1 AAACC-CTAAACCCTTAACTTAA
*
37324125 AAACCATAACCCTAACCCTTAACTTAA
1 AAACCCT-A----AACCCTTAACTTAA
* * *
37324152 AACCCCTAACCCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
* *
37324174 AAACCAT-AACCCTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
37324195 AAA-CCTAAACCCTTAA-TCTAA
1 AAACCCTAAACCCTTAACT-TAA
37324216 AAACCCTAATCCTAAACCCTTAACCTT-A
1 AAA--C----CCTAAACCCTTAA-CTTAA
**
37324244 AAACCCT-AACGATTAACATT-A
1 AAACCCTAAACCCTTAAC-TTAA
* * *
37324265 AAACCCT-AACCATTTACCTAA
1 AAACCCTAAACCCTTAACTTAA
* *
37324286 AAACCCT-AACTCTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
* *
37324307 AAATCCTAAACCCTTAACCTAAA
1 AAACCCTAAACCCTTAA-CTTAA
* *
37324330 AAACTCTAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
* *
37324352 AAACACT-AACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
** *
37324373 AAACCCTAAA-CAGTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
*
37324394 AAACCCTTAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
37324416 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* * *
37324438 AAACCCT-AAGCCTAAACCCTAA
1 AAACCCTAAACCCTTAA-CTTAA
* ** *
37324460 CCCTAAAACCCTAACCCTTAACCT-A
1 ----AAACCCTAAACCCTTAACTTAA
* * *
37324485 AAACCCTAAA-GCTTAAATTTA
1 AAACCCTAAACCCTTAACTTAA
37324506 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
37324528 AAACCCT-AACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
*
37324549 AAACCCTAAACCCTTAACTTGA
1 AAACCCTAAACCCTTAACTTAA
*
37324571 AAACCCT-AACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
37324592 AAACCCTAAA-CCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
37324613 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* *
37324635 AAACCCT-AACACTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
*
37324656 AAACCCTAAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
* *
37324678 AAACCCT-AACCCTTAACCTGA
1 AAACCCTAAACCCTTAACTTAA
* *
37324699 AAACCTTAAA-CCTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
*
37324720 AAACCCTAGACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
37324742 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
37324764 AAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
37324785 A
1 A
37324786 TATAATTTGA
Statistics
Matches: 585, Mismatches: 80, Indels: 79
0.79 0.11 0.11
Matches are distributed among these distances:
20 17 0.03
21 279 0.48
22 209 0.36
23 25 0.04
25 1 0.00
26 10 0.02
27 25 0.04
28 17 0.03
29 1 0.00
30 1 0.00
ACGTcount: A:0.44, C:0.31, G:0.01, T:0.23
Consensus pattern (22 bp):
AAACCCTAAACCCTTAACTTAA
Found at i:37324120 original size:43 final size:42
Alignment explanation
Indices: 37324060--37324785 Score: 630
Period size: 43 Copynumber: 16.5 Consensus size: 42
37324050 TTTAATTGAC
* *
37324060 AAACCTTAAACCCTTAACCTAAAAACCCTAACCCTTAACTTA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTA
*
37324102 AAACCACTAAACCCTTAACCTAAAAACCATAACCCTAACCCTTAACTTA
1 AAACC-CTAAACCCTTAA-CT--TAA--A-AACCCTAACCCTTAACTTA
* * *
37324151 AAACCCCTAACCCCTTAACCTAAAAACCATAACCCTTAACTTTA
1 AAA-CCCTAAACCCTTAACTTAAAAACCCTAACCCTTAAC-TTA
37324195 AAA-CCTAAACCCTTAA-TCTAAAAACCCTAATCCTAAACCCTTAACCTTA
1 AAACCCTAAACCCTTAACT-TAAAAA--C----CCT-AACCCTTAA-CTTA
** * * *
37324244 AAACCCT-AACGATTAACATT-AAAACCCTAACCATTTACCTAA
1 AAACCCTAAACCCTTAAC-TTAAAAACCCTAACC-CTTAACTTA
* * * *
37324286 AAACCCT-AACTCTTAACTTTAAAATCCTAAACCCTTAACCTAAA
1 AAACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAA-CT-TA
* * * *
37324330 AAACTCTAAACCCTTAAATTAAAAACACTAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTT-A
** *
37324373 AAACCCTAAA-CAGTAACTTTAAAACCCTTAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCC-TAACCCTTAACTT-A
* *
37324416 AAACCCTAAACCCTTAACTTAAAAACCCTAAGCCTAAACCCTAACCCTA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAA--C----CCTTAA-CTTA
* ** *
37324465 AAACCCT-AACCCTTAACCT-AAAACCCTAAAGCTTAAATTTA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTT-AACTTA
*
37324506 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTT-A
* *
37324549 AAACCCTAAACCCTTAACTTGAAAACCCTAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAA-CTTA
37324592 AAACCCTAAA-CCTTAACTTAAAAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTT-A
* * *
37324635 AAACCCT-AACACTTAAATTAAAAACCCTAAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAA-CTTA
* * * *
37324678 AAACCCT-AACCCTTAACCTGAAAACCTTAAACCTTAACTTTA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAAC-TTA
*
37324720 AAACCCTAGACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTT-A
37324764 AAACCCT-AACCCTTAACTTAAA
1 AAACCCTAAACCCTTAACTTAAA
37324786 TATAATTTGA
Statistics
Matches: 563, Mismatches: 71, Indels: 99
0.77 0.10 0.14
Matches are distributed among these distances:
41 14 0.02
42 122 0.22
43 238 0.42
44 60 0.11
45 17 0.03
46 4 0.01
47 11 0.02
48 15 0.03
49 72 0.13
50 9 0.02
51 1 0.00
ACGTcount: A:0.44, C:0.31, G:0.01, T:0.23
Consensus pattern (42 bp):
AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTA
Found at i:37324146 original size:27 final size:27
Alignment explanation
Indices: 37324111--37324186 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
37324101 AAAACCACTA
37324111 AACCCTTAACCTAAAAACCATAACCCT
1 AACCCTTAACCTAAAAACCATAACCCT
*
37324138 AACCCTTAA-CTTAAAA-C----CCCT
1 AACCCTTAACCTAAAAACCATAACCCT
37324159 AACCCCTTAACCTAAAAACCATAACCCT
1 AA-CCCTTAACCTAAAAACCATAACCCT
37324187 TAACTTTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
21 6 0.15
22 7 0.17
23 6 0.15
24 1 0.03
25 1 0.03
26 6 0.15
27 9 0.22
28 4 0.10
ACGTcount: A:0.42, C:0.38, G:0.00, T:0.20
Consensus pattern (27 bp):
AACCCTTAACCTAAAAACCATAACCCT
Found at i:37324238 original size:28 final size:28
Alignment explanation
Indices: 37324198--37324252 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
37324188 AACTTTAAAA
*
37324198 CCTAAACCCTTAATCTAAAAACCCTAAT
1 CCTAAACCCTTAACCTAAAAACCCTAAT
*
37324226 CCTAAACCCTTAACCTTAAAACCCTAA
1 CCTAAACCCTTAACCTAAAAACCCTAA
37324253 CGATTAACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.42, C:0.35, G:0.00, T:0.24
Consensus pattern (28 bp):
CCTAAACCCTTAACCTAAAAACCCTAAT
Found at i:37324253 original size:14 final size:15
Alignment explanation
Indices: 37324201--37324250 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
37324191 TTTAAAACCT
* *
37324201 AAACCCTTAATCTAA
1 AAACCCTTAACCTTA
37324216 AAACCC-TAATCC-T-
1 AAACCCTTAA-CCTTA
37324229 AAACCCTTAACCTTA
1 AAACCCTTAACCTTA
37324244 AAACCCT
1 AAACCCT
37324251 AACGATTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 8 0.28
14 7 0.24
15 14 0.48
ACGTcount: A:0.42, C:0.34, G:0.00, T:0.24
Consensus pattern (15 bp):
AAACCCTTAACCTTA
Found at i:37324426 original size:7 final size:7
Alignment explanation
Indices: 37324416--37324494 Score: 51
Period size: 6 Copynumber: 11.4 Consensus size: 7
37324406 CTTAACTTAA
37324416 AAACCCT
1 AAACCCT
37324423 AAACCCT
1 AAACCCT
* *
37324430 TAA-CTT
1 AAACCCT
37324436 AAAAACCCT
1 --AAACCCT
*
37324445 -AAGCCT
1 AAACCCT
37324451 AAACCCT
1 AAACCCT
37324458 -AACCCT
1 AAACCCT
37324464 AAAACCCT
1 -AAACCCT
37324472 -AACCCT
1 AAACCCT
*
37324478 TAA-CCT
1 AAACCCT
37324484 AAAACCCT
1 -AAACCCT
37324492 AAA
1 AAA
37324495 GCTTAAATTT
Statistics
Matches: 56, Mismatches: 7, Indels: 18
0.69 0.09 0.22
Matches are distributed among these distances:
6 22 0.39
7 21 0.38
8 11 0.20
9 2 0.04
ACGTcount: A:0.44, C:0.37, G:0.01, T:0.18
Consensus pattern (7 bp):
AAACCCT
Found at i:37324460 original size:27 final size:28
Alignment explanation
Indices: 37324417--37324482 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 28
37324407 TTAACTTAAA
*
37324417 AACCCTAAACCCTTAA-CTTAAAAACCCT
1 AACCCTAAACCCTTAACCCT-AAAACCCT
*
37324445 AAGCCTAAACCC-TAACCCTAAAACCCT
1 AACCCTAAACCCTTAACCCTAAAACCCT
*
37324472 AACCCTTAACC
1 AACCCTAAACC
37324483 TAAAACCCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 20 0.61
28 13 0.39
ACGTcount: A:0.41, C:0.39, G:0.02, T:0.18
Consensus pattern (28 bp):
AACCCTAAACCCTTAACCCTAAAACCCT
Found at i:37324482 original size:13 final size:13
Alignment explanation
Indices: 37324438--37324482 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
37324428 CTTAACTTAA
*
37324438 AAACCCTAAGCCT
1 AAACCCTAACCCT
37324451 AAACCCTAACCCT
1 AAACCCTAACCCT
37324464 AAAACCCTAACCCT
1 -AAACCCTAACCCT
*
37324478 TAACC
1 AAACC
37324483 TAAAACCCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 16 0.55
14 13 0.45
ACGTcount: A:0.40, C:0.42, G:0.02, T:0.16
Consensus pattern (13 bp):
AAACCCTAACCCT
Found at i:37324491 original size:14 final size:14
Alignment explanation
Indices: 37324437--37324477 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
37324427 CCTTAACTTA
*
37324437 AAAACCCTAAGCCT
1 AAAACCCTAACCCT
37324451 -AAACCCTAACCCT
1 AAAACCCTAACCCT
37324464 AAAACCCTAACCCT
1 AAAACCCTAACCCT
37324478 TAACCTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.48
14 13 0.52
ACGTcount: A:0.41, C:0.41, G:0.02, T:0.15
Consensus pattern (14 bp):
AAAACCCTAACCCT
Found at i:37326154 original size:22 final size:22
Alignment explanation
Indices: 37326126--37326177 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
37326116 AGGTCTGTGA
37326126 TGGCACTTAGGACGTATCTCTC
1 TGGCACTTAGGACGTATCTCTC
37326148 TGGCACTTAGGACGTATCTCTC
1 TGGCACTTAGGACGTATCTCTC
*
37326170 TAGCACTT
1 TGGCACTT
37326178 GACACCACTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (22 bp):
TGGCACTTAGGACGTATCTCTC
Found at i:37327933 original size:126 final size:125
Alignment explanation
Indices: 37327675--37328241 Score: 742
Period size: 126 Copynumber: 4.5 Consensus size: 125
37327665 CCAAACATGT
* *
37327675 TACTATAGCAAAAGCGCATCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
* * * * * *
37327740 AGAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCTAGGACC
66 TGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGACC
* * * *
37327799 AACTGTAGCAAAAGCGTGTCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATGCTGC
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTGC
* * *
37327863 TTGCAGCGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACC
65 TTGAAGCGTT-TTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGACC
* * * * *
37327925 TACTGTAGCAAAAGTGCATCCACGTGGGCCCGACTTCACAAATTCTTCTTATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
* *
37327990 TGAAGCGTTTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTCTTCCAGGACC
66 TGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTT-TTCCAGGACC
* * * * *
37328051 AACTGTAGTAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTTTTCTCACAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
* * * *
37328116 TGAAGCATTTTTTAAACTATTTGCTAAGAAACGTTAAGTCAAAATTATTTTTCCAGGACC
66 TGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGACC
* * * * * * * *
37328176 TATTGTAGCAAAAGCGCGTACACGTGGGCGCGACTTCAAAAATCCTTCTGATAAATCATCCAGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
37328241 T
66 T
37328242 TGATTTTATC
Statistics
Matches: 382, Mismatches: 56, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
123 2 0.01
124 61 0.16
125 101 0.26
126 216 0.57
127 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (125 bp):
TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
TGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGACC
Found at i:37328160 original size:251 final size:250
Alignment explanation
Indices: 37327675--37328241 Score: 823
Period size: 251 Copynumber: 2.3 Consensus size: 250
37327665 CCAAACATGT
* *
37327675 TACTATAGCAAAAGCGCATCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCATCCACGTGGGCGCGACTTCACAAATTCTTCTCATAAAGCATCCTGCT
* * * * *
37327740 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCTAGGACCAACTGT
66 TGAAGCGATTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTGT
* * *
37327805 AGCAAAAGCGTGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATGCTGCTTGCAGC
131 AGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTTGAAGC
* * * *
37327870 GTTGTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACC
196 ATTGTTTTAAACTATTTGCTAAGAAACGTCAACTCAAAATTATTTTTCCAGGACC
* * *
37327925 TACTGTAGCAAAAGTGCATCCACGTGGGCCCGACTTCACAAATTCTTCTTATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCATCCACGTGGGCGCGACTTCACAAATTCTTCTCATAAAGCATCCTGCT
*
37327990 TGAAGCGTTTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTCTTCCAGGACCAACT
66 TGAAGCG-ATTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTT-TTCCAGGACCAACT
* *
37328055 GTAGTAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTTTTCTCACAA-AGCATCCTGCTTGA
129 GTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTGCTTGA
* *
37328119 AGCATT-TTTTAAACTATTTGCTAAGAAACGTTAAGTCAAAATTATTTTTCCAGGACC
193 AGCATTGTTTTAAACTATTTGCTAAGAAACGTCAACTCAAAATTATTTTTCCAGGACC
* * * * * * * *
37328176 TATTGTAGCAAAAGCGCGTACACGTGGGCGCGACTTCAAAAATCCTTCTGATAAATCATCCAGCT
1 TACTGTAGCAAAAGCGCATCCACGTGGGCGCGACTTCACAAATTCTTCTCATAAAGCATCCTGCT
37328241 T
66 T
37328242 TGATTTTATC
Statistics
Matches: 282, Mismatches: 32, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
250 66 0.23
251 140 0.50
252 74 0.26
253 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (250 bp):
TACTGTAGCAAAAGCGCATCCACGTGGGCGCGACTTCACAAATTCTTCTCATAAAGCATCCTGCT
TGAAGCGATTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTGT
AGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTTGAAGC
ATTGTTTTAAACTATTTGCTAAGAAACGTCAACTCAAAATTATTTTTCCAGGACC
Found at i:37330323 original size:17 final size:17
Alignment explanation
Indices: 37330303--37330335 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
37330293 ATTATATACT
37330303 TTATATTATAATATTTG
1 TTATATTATAATATTTG
37330320 TTATATTATAATATTT
1 TTATATTATAATATTT
37330336 AGTAACTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
TTATATTATAATATTTG
Found at i:37331155 original size:21 final size:21
Alignment explanation
Indices: 37331129--37331170 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
37331119 CAAAAGTATA
37331129 ATACTAATTTTTTAAAAAATT
1 ATACTAATTTTTTAAAAAATT
37331150 ATACTAATTTTTTAAAAAATT
1 ATACTAATTTTTTAAAAAATT
37331171 TAAGGATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (21 bp):
ATACTAATTTTTTAAAAAATT
Found at i:37335632 original size:22 final size:21
Alignment explanation
Indices: 37335597--37335673 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 21
37335587 AAAAGGTATC
* *
37335597 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
37335618 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* * *
37335641 TGCATATCATA--TCTAATAT
1 TACAAATCATATCTCTAAGAT
*
37335660 TACATATCATATCT
1 TACAAATCATATCT
37335674 AAGATTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
19 17 0.37
21 4 0.09
22 15 0.33
23 10 0.22
ACGTcount: A:0.42, C:0.17, G:0.04, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:37335640 original size:23 final size:22
Alignment explanation
Indices: 37335597--37335654 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
37335587 AAAAGGTATC
* *
37335597 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
37335618 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
37335641 TGCATATCATATCT
1 TACAAATCATATCT
37335655 AATATTACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:37335665 original size:19 final size:19
Alignment explanation
Indices: 37335633--37335686 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
37335623 AATCATATCT
37335633 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* *
37335652 TCTAATATTACATATCATA
1 TCTAAGATTGCATATCATA
37335671 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
37335687 CTTGAAGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:37335923 original size:22 final size:22
Alignment explanation
Indices: 37335895--37335938 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
37335885 TTTTGATGTT
37335895 AAACTTGTAAATTTAAAATTCA
1 AAACTTGTAAATTTAAAATTCA
37335917 AAACTTGTAAATTTAAAATTCA
1 AAACTTGTAAATTTAAAATTCA
37335939 GGATAATGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (22 bp):
AAACTTGTAAATTTAAAATTCA
Found at i:37344393 original size:25 final size:26
Alignment explanation
Indices: 37344351--37344419 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 26
37344341 ATGCTCATAC
*
37344351 GAGCTGCA-AACAGTAAGCTCT-TCA
1 GAGCTGAATAACAGTAAGCTCTCTCA
*
37344375 GAGCTGAATAACAGTAAGCT-TCTCC
1 GAGCTGAATAACAGTAAGCTCTCTCA
*
37344400 GAGCTGAATAA-TGTAAGCTC
1 GAGCTGAATAACAGTAAGCTC
37344420 ATACGAGCTG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
24 15 0.38
25 24 0.62
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (26 bp):
GAGCTGAATAACAGTAAGCTCTCTCA
Found at i:37344426 original size:24 final size:24
Alignment explanation
Indices: 37344337--37344456 Score: 79
Period size: 25 Copynumber: 4.9 Consensus size: 24
37344327 ATTCATGTAC
*
37344337 ATGTATGCTCATACGAGCTGCAA-A
1 ATGTAAGCTCATACGAGCTG-AATA
*
37344361 CA-GTAAGCTC-TTCAGAGCTGAATA
1 -ATGTAAGCTCATAC-GAGCTGAATA
* *
37344385 ACAGTAAGCTTC-TCCGAGCTGAATA
1 A-TGTAAGC-TCATACGAGCTGAATA
*
37344410 ATGTAAGCTCATACGAGCTGAGT-
1 ATGTAAGCTCATACGAGCTGAATA
* *
37344433 ATCGGTAAGCTCATAAGAGTTGAA
1 AT--GTAAGCTCATACGAGCTGAA
37344457 ATTGGTAACC
Statistics
Matches: 78, Mismatches: 9, Indels: 16
0.76 0.09 0.16
Matches are distributed among these distances:
23 9 0.12
24 30 0.38
25 35 0.45
26 4 0.05
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (24 bp):
ATGTAAGCTCATACGAGCTGAATA
Found at i:37354064 original size:20 final size:19
Alignment explanation
Indices: 37354035--37354079 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
37354025 ATTACAATTT
*
37354035 AAAAATTAAATTAAAAACA
1 AAAAATTAAAATAAAAACA
*
37354054 AAAATATTAAAATAAAAATA
1 AAAA-ATTAAAATAAAAACA
37354074 AAAAAT
1 AAAAAT
37354080 AACTAAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAAATTAAAATAAAAACA
Found at i:37354945 original size:51 final size:51
Alignment explanation
Indices: 37354869--37354970 Score: 186
Period size: 51 Copynumber: 2.0 Consensus size: 51
37354859 AACCGAAAGA
37354869 AATAAAGAAACTCGTGATAAATTTCTAAGAATTCAATTGGAAATCTTCAAT
1 AATAAAGAAACTCGTGATAAATTTCTAAGAATTCAATTGGAAATCTTCAAT
* *
37354920 AATAAAGAAACTCGTGATAACTTTCTTAGAATTCAATTGGAAATCTTCAAT
1 AATAAAGAAACTCGTGATAAATTTCTAAGAATTCAATTGGAAATCTTCAAT
37354971 CTTGACGGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (51 bp):
AATAAAGAAACTCGTGATAAATTTCTAAGAATTCAATTGGAAATCTTCAAT
Found at i:37355869 original size:9 final size:9
Alignment explanation
Indices: 37355832--37355895 Score: 58
Period size: 9 Copynumber: 6.8 Consensus size: 9
37355822 ATTAAAAAAT
37355832 ATTTTTATA
1 ATTTTTATA
*
37355841 CTTTTT-TA
1 ATTTTTATA
*
37355849 TTTTTTAAATA
1 ATTTTT--ATA
37355860 ATTTTTATAAA
1 ATTTTTAT--A
*
37355871 ATTTTTTTA
1 ATTTTTATA
37355880 ATTTTTATA
1 ATTTTTATA
37355889 ATTTTTA
1 ATTTTTA
37355896 AATATTAATT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
8 7 0.16
9 23 0.51
11 15 0.33
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (9 bp):
ATTTTTATA
Found at i:37357662 original size:7 final size:7
Alignment explanation
Indices: 37357640--37357681 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
37357630 GGGAATGTAA
37357640 AATA-AT
1 AATACAT
37357646 AATA-AT
1 AATACAT
37357652 AATACAT
1 AATACAT
37357659 AATACAT
1 AATACAT
37357666 AATACAT
1 AATACAT
*
37357673 AATAGAT
1 AATACAT
37357680 AA
1 AA
37357682 GTAAATACAA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
6 10 0.29
7 24 0.71
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (7 bp):
AATACAT
Found at i:37358160 original size:3 final size:3
Alignment explanation
Indices: 37358152--37358198 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
37358142 AAATTAGTTA
37358152 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
37358199 AAGGATATAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:37361269 original size:24 final size:24
Alignment explanation
Indices: 37361242--37361287 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
37361232 CTTGAAACCA
*
37361242 TTTCCGCAGCTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
*
37361266 TTTCCACAGCTCCTCTTTTCAC
1 TTTCCACAGCTCCTCTCTTCAC
37361288 TCTCTTCACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.11, C:0.46, G:0.07, T:0.37
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:37361329 original size:14 final size:14
Alignment explanation
Indices: 37361310--37361339 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
37361300 ACCGATTGCA
37361310 GCCTCATCATCTCT
1 GCCTCATCATCTCT
*
37361324 GCCTCATCTTCTCT
1 GCCTCATCATCTCT
37361338 GC
1 GC
37361340 TAGTTCACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.43, G:0.10, T:0.37
Consensus pattern (14 bp):
GCCTCATCATCTCT
Found at i:37362893 original size:23 final size:25
Alignment explanation
Indices: 37362860--37362905 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
37362850 ACAAAAGTTA
37362860 AATACATAAATACATTA-AATTAAC
1 AATACATAAATACATTACAATTAAC
*
37362884 AATAC-TAAATGCATTACAATTA
1 AATACATAAATACATTACAATTA
37362906 TTTATCATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.54, C:0.13, G:0.02, T:0.30
Consensus pattern (25 bp):
AATACATAAATACATTACAATTAAC
Found at i:37363942 original size:19 final size:19
Alignment explanation
Indices: 37363920--37363958 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37363910 CGTCTTTTGA
37363920 AACTT-TTAGTGATTTTAGG
1 AACTTATTAGT-ATTTTAGG
*
37363939 AACTTATTAGTTTTTTAGG
1 AACTTATTAGTATTTTAGG
37363958 A
1 A
37363959 TTGTATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.28, C:0.05, G:0.18, T:0.49
Consensus pattern (19 bp):
AACTTATTAGTATTTTAGG
Found at i:37366277 original size:15 final size:15
Alignment explanation
Indices: 37366257--37366287 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37366247 GAAGCGCTTA
*
37366257 ATAAATTTAAAGTTT
1 ATAAATCTAAAGTTT
37366272 ATAAATCTAAAGTTT
1 ATAAATCTAAAGTTT
37366287 A
1 A
37366288 ACGTCAGTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.42
Consensus pattern (15 bp):
ATAAATCTAAAGTTT
Found at i:37372659 original size:16 final size:16
Alignment explanation
Indices: 37372638--37372691 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
37372628 GAGTTTTGGG
37372638 GCAAAAGTGTAAATGT
1 GCAAAAGTGTAAATGT
* * *
37372654 GCAAAAGT-T-TAGGG
1 GCAAAAGTGTAAATGT
*
37372668 GTAAAAGTGTAAATGT
1 GCAAAAGTGTAAATGT
37372684 GCAAAAGT
1 GCAAAAGT
37372692 TTGAGTCAAG
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
14 9 0.32
15 2 0.07
16 17 0.61
ACGTcount: A:0.43, C:0.06, G:0.28, T:0.24
Consensus pattern (16 bp):
GCAAAAGTGTAAATGT
Found at i:37372674 original size:30 final size:30
Alignment explanation
Indices: 37372629--37372693 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
37372619 TTAATTTCCG
*
37372629 AGTTTTGGGGCAAAAGTGTAAATGTGCAAA
1 AGTTTAGGGGCAAAAGTGTAAATGTGCAAA
*
37372659 AGTTTAGGGGTAAAAGTGTAAATGTGCAAA
1 AGTTTAGGGGCAAAAGTGTAAATGTGCAAA
37372689 AGTTT
1 AGTTT
37372694 GAGTCAAGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.37, C:0.05, G:0.29, T:0.29
Consensus pattern (30 bp):
AGTTTAGGGGCAAAAGTGTAAATGTGCAAA
Found at i:37373381 original size:50 final size:50
Alignment explanation
Indices: 37373157--37373593 Score: 545
Period size: 50 Copynumber: 8.7 Consensus size: 50
37373147 TATCGATGAA
* * * * *
37373157 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATA-ATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAA-ACTTGAT
* * * * * * * *
37373208 CACATGTGTAGTACTAAGTGAATGCTACAATGTGTACCG-AGAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-TTGAT
* * * * *** *
37373259 CACATGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGAT
* *
37373310 CACGTGTGTAGTACTAAGTGAAGGCTACTACGTGAACCGTAAAACTAGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
*
37373360 CACGTATGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
* * *
37373410 CACATGTGAAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTAGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
*
37373460 CACGTATGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
* *
37373510 CACATGTGAAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
37373560 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
37373594 TATCGAATGA
Statistics
Matches: 335, Mismatches: 46, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
49 1 0.00
50 226 0.67
51 105 0.31
52 2 0.01
53 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
Found at i:37379406 original size:25 final size:26
Alignment explanation
Indices: 37379374--37379428 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
37379364 TTATTAAATT
*
37379374 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
37379399 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
37379424 A-ATAT
1 ATATAT
37379429 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:37379615 original size:44 final size:45
Alignment explanation
Indices: 37379566--37379660 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
37379556 TTACACCTCT
* *
37379566 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
37379610 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
37379655 ATTACA
1 ATTACA
37379661 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:37379660 original size:16 final size:16
Alignment explanation
Indices: 37379641--37379692 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
37379631 GATTTGCTAT
* *
37379641 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
37379657 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
37379673 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
37379689 TACA
1 TACA
37379693 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:37380411 original size:9 final size:9
Alignment explanation
Indices: 37380399--37380519 Score: 53
Period size: 9 Copynumber: 13.8 Consensus size: 9
37380389 AAAAGATTTT
*
37380399 TTTAATATA
1 TTTAAAATA
37380408 TTTAAAAT-
1 TTTAAAATA
*
37380416 TTTAAAAAA
1 TTTAAAATA
*
37380425 TTTAAAAAA
1 TTTAAAATA
37380434 TTT-AAATA
1 TTTAAAATA
*
37380442 TATTAAAAAA
1 T-TTAAAATA
* *
37380452 GGTT-AAGTA
1 -TTTAAAATA
37380461 --TAACCAAT-
1 TTTAA--AATA
37380469 TTTAAAAT-
1 TTTAAAATA
37380477 TTTAAAATA
1 TTTAAAATA
*
37380486 TTTAATATA
1 TTTAAAATA
37380495 TTTTAAAA-A
1 -TTTAAAATA
*
37380504 ATT-AAATA
1 TTTAAAATA
37380512 TATTAAAA
1 T-TTAAAA
37380520 AAATGTTAAG
Statistics
Matches: 86, Mismatches: 12, Indels: 27
0.69 0.10 0.22
Matches are distributed among these distances:
6 1 0.01
7 4 0.05
8 26 0.30
9 37 0.43
10 18 0.21
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (9 bp):
TTTAAAATA
Found at i:37380420 original size:17 final size:16
Alignment explanation
Indices: 37380398--37380449 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 16
37380388 AAAAAGATTT
37380398 TTTTAATATATTTAAAA
1 TTTTAA-ATATTTAAAA
*
37380415 TTTTAAAAAATTTAAAAA
1 TTTT-AAATATTT-AAAA
*
37380433 ATTTAAATATATTAAAA
1 TTTTAAATAT-TTAAAA
37380450 AAGGTTAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 18 0.62
18 11 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TTTTAAATATTTAAAA
Found at i:37380450 original size:19 final size:19
Alignment explanation
Indices: 37380402--37380538 Score: 58
Period size: 19 Copynumber: 7.5 Consensus size: 19
37380392 AGATTTTTTT
* *
37380402 AATATATT-TAAAATTTTA
1 AATATATTAAAAAAATTTA
* *
37380420 AA-AAATTTAAAAAATTTA
1 AATATATTAAAAAAATTTA
**
37380438 AATATATTAAAAAAGGTT-
1 AATATATTAAAAAAATTTA
* ** *
37380456 AA-GTA-TAACCAATTTTA
1 AATATATTAAAAAAATTTA
* *
37380473 AA-AT-TTTAAAATATTT-
1 AATATATTAAAAAAATTTA
*
37380489 AATATATTTTAAAAAA-TTA
1 AATATA-TTAAAAAAATTTA
37380508 AATATATTAAAAAAATGTTA
1 AATATATTAAAAAAAT-TTA
*
37380528 AGTATAATTAA
1 AATAT-ATTAA
37380539 TTTTAAAATT
Statistics
Matches: 87, Mismatches: 21, Indels: 19
0.69 0.17 0.15
Matches are distributed among these distances:
16 9 0.10
17 17 0.20
18 24 0.28
19 25 0.29
20 7 0.08
21 5 0.06
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.39
Consensus pattern (19 bp):
AATATATTAAAAAAATTTA
Found at i:37380541 original size:71 final size:71
Alignment explanation
Indices: 37380398--37380570 Score: 226
Period size: 71 Copynumber: 2.4 Consensus size: 71
37380388 AAAAAGATTT
* * *
37380398 TTTTAATATATTTAAAAT-TTTAA-AAAATTTAAAAAATTTAAATATATTAAAAAAGGTTAAGTA
1 TTTTAAAAT-TTTAAAATATTTAATATATTTTAAAAAATTTAAATATATTAAAAAAGGTTAAGTA
37380461 TAACCAA
65 TAACCAA
*
37380468 TTTTAAAATTTTAAAATATTTAATATATTTTAAAAAA-TTAAATATATTAAAAAAATGTTAAGTA
1 TTTTAAAATTTTAAAATATTTAATATATTTTAAAAAATTTAAATATATT-AAAAAAGGTTAAGTA
**
37380532 TAATTAA
65 TAACCAA
* *
37380539 TTTTAAAATTTTAATATATTCAATATAGTTTT
1 TTTTAAAATTTTAAAATATTTAATATA-TTTT
37380571 TTAAAATATA
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
69 8 0.09
70 24 0.26
71 55 0.60
72 4 0.04
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (71 bp):
TTTTAAAATTTTAAAATATTTAATATATTTTAAAAAATTTAAATATATTAAAAAAGGTTAAGTAT
AACCAA
Found at i:37380612 original size:20 final size:20
Alignment explanation
Indices: 37380547--37380616 Score: 65
Period size: 20 Copynumber: 3.4 Consensus size: 20
37380537 AATTTTAAAA
*
37380547 TTTTAATATATTCAATATAGTT
1 TTTTAATATATTTAATATA--T
37380569 TTTTAAAATATATTTTAA-A-A-
1 TTTT--AATATA-TTTAATATAT
37380589 TTTTAATATATTTAATATAT
1 TTTTAATATATTTAATATAT
37380609 TTTTAATA
1 TTTTAATA
37380617 GGTAAAGAGA
Statistics
Matches: 41, Mismatches: 1, Indels: 14
0.73 0.02 0.25
Matches are distributed among these distances:
17 5 0.12
18 7 0.17
19 1 0.02
20 12 0.29
22 4 0.10
23 1 0.02
24 7 0.17
25 4 0.10
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (20 bp):
TTTTAATATATTTAATATAT
Found at i:37380727 original size:90 final size:90
Alignment explanation
Indices: 37380636--37380826 Score: 228
Period size: 90 Copynumber: 2.1 Consensus size: 90
37380626 AAAAAATATT
* * *
37380636 TTTTAATATATTTAAAAT-TTTA-AAAAATTAAAAAAATTTTAA-ATTTTAAATATGTTAAAGAA
1 TTTTAATATATTTAAAATATTTAGAAAAATT-AAAAAATATTAACATTTTAAACATATTAAA-AA
*
37380698 AATGTTGAGTA-TAACCAATTTTAAAA
64 AATGTTAAGTATTAACCAATTTTAAAA
* * * * * * *
37380724 TTTTAATATACTTAATATATTTAGATATATTAAAATATATTAACATTTTGAACCTATTAAAAAAA
1 TTTTAATATATTTAAAATATTTAGAAAAATTAAAAAATATTAACATTTTAAACATATTAAAAAAA
*
37380789 TTTTAAGTATTAACCAATTTTAAAA
66 TGTTAAGTATTAACCAATTTTAAAA
37380814 TTTTAATATATTT
1 TTTTAATATATTT
37380827 TTTAATAGGT
Statistics
Matches: 86, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
88 16 0.19
89 25 0.29
90 45 0.52
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (90 bp):
TTTTAATATATTTAAAATATTTAGAAAAATTAAAAAATATTAACATTTTAAACATATTAAAAAAA
TGTTAAGTATTAACCAATTTTAAAA
Found at i:37380756 original size:18 final size:18
Alignment explanation
Indices: 37380718--37380766 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
37380708 ATAACCAATT
37380718 TTAAAAT-TTTAATATAC
1 TTAAAATATTTAATATAC
*
37380735 TTAATATATTTAGATATA-
1 TTAAAATATTTA-ATATAC
37380753 TTAAAATATATTAA
1 TTAAAATAT-TTAA
37380767 CATTTTGAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 6 0.22
18 13 0.48
19 8 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (18 bp):
TTAAAATATTTAATATAC
Found at i:37420605 original size:45 final size:45
Alignment explanation
Indices: 37420550--37420636 Score: 131
Period size: 45 Copynumber: 1.9 Consensus size: 45
37420540 ACAATGAATA
*
37420550 GAAATAGAGAAATGGAAA-AATTTAGAAATGATTATGGTTTTCTTT
1 GAAATAGAGAAAT-GAAATAATTTAGAAATGAATATGGTTTTCTTT
* *
37420595 GAAATTGAGAAATGAAATAATTTAGAAATGAATGTGGTTTTC
1 GAAATAGAGAAATGAAATAATTTAGAAATGAATATGGTTTTC
37420637 ACAAAATGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 4 0.11
45 34 0.89
ACGTcount: A:0.43, C:0.02, G:0.21, T:0.34
Consensus pattern (45 bp):
GAAATAGAGAAATGAAATAATTTAGAAATGAATATGGTTTTCTTT
Found at i:37420650 original size:6 final size:6
Alignment explanation
Indices: 37420639--37420682 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
37420629 TGGTTTTCAC
* * *
37420639 AAAATG AAAATG GAAATG GAAATG GAAATG AAAATG AGAAATG A
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG A-AAATG A
37420683 TTTATGTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.59, C:0.00, G:0.25, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:37420661 original size:12 final size:12
Alignment explanation
Indices: 37420640--37420682 Score: 68
Period size: 12 Copynumber: 3.5 Consensus size: 12
37420630 GGTTTTCACA
37420640 AAATGAAAATGG
1 AAATGAAAATGG
*
37420652 AAATGGAAATGG
1 AAATGAAAATGG
37420664 AAATGAAAATGAG
1 AAATGAAAATG-G
37420677 AAATGA
1 AAATGA
37420683 TTTATGTGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
12 21 0.75
13 7 0.25
ACGTcount: A:0.58, C:0.00, G:0.26, T:0.16
Consensus pattern (12 bp):
AAATGAAAATGG
Found at i:37420667 original size:18 final size:19
Alignment explanation
Indices: 37420640--37420682 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
37420630 GGTTTTCACA
*
37420640 AAATGAAAATGGAAATG-G
1 AAATGAAAATGAAAATGAG
*
37420658 AAATGGAAATGAAAATGAG
1 AAATGAAAATGAAAATGAG
37420677 AAATGA
1 AAATGA
37420683 TTTATGTGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.58, C:0.00, G:0.26, T:0.16
Consensus pattern (19 bp):
AAATGAAAATGAAAATGAG
Found at i:37437593 original size:15 final size:15
Alignment explanation
Indices: 37437556--37437601 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
37437546 AGTTGTAATG
37437556 ATCCAAACTCGAAAAA
1 ATCCAAACTC-AAAAA
37437572 ATCCAAACTCAAAAA
1 ATCCAAACTCAAAAA
* * *
37437587 CTTCAAACTTAAAAA
1 ATCCAAACTCAAAAA
37437602 GCTTGAACTC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 17 0.63
16 10 0.37
ACGTcount: A:0.57, C:0.24, G:0.02, T:0.17
Consensus pattern (15 bp):
ATCCAAACTCAAAAA
Found at i:37454020 original size:44 final size:44
Alignment explanation
Indices: 37453924--37454263 Score: 239
Period size: 44 Copynumber: 7.8 Consensus size: 44
37453914 ACTAGATGCG
* * ** * *
37453924 ATCTGCTCTACTGGAACTTCAAAGAGATAAGATCTATTA-CTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TCTTAGCTTCA
* * * *
37453968 ATCCGCTCCACTACAACTTCAGGGAGATAGGATTCTTGGCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCTTAGCTTCA
* * * *
37454012 ATCTGCTCCACTGTAACTTCAGGGAGATAATATT-TTCCATCTTCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCTT--AGCTTCA
* * *
37454057 ATCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCTTA-C-TCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA--TTCTTAGCTTCA
* * * * *
37454101 GTCTGCTCCGCTGCAACTTCAGGGAGATAAGA--CTTA-ATGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCTTAGCTTCA
* * * * *
37454142 AT-TCACTCTACTGCAACTTCAGAGAGATAAGATCTATTA-CTTTA
1 ATCT-GCTCCACTGCAACTTCAGGGAGATAAGAT-TCTTAGCTTCA
* * * * * * * *
37454186 ATCCGCTCCACTACAACTTTAAGAAGATAGGATTATTAGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCTTAGCTTCA
37454230 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
37454264 TGCCCTTTTC
Statistics
Matches: 227, Mismatches: 56, Indels: 26
0.73 0.18 0.08
Matches are distributed among these distances:
40 5 0.02
41 26 0.11
43 10 0.04
44 149 0.66
45 33 0.15
46 1 0.00
47 1 0.00
48 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCTTAGCTTCA
Found at i:37454413 original size:131 final size:130
Alignment explanation
Indices: 37454250--37454486 Score: 357
Period size: 131 Copynumber: 1.8 Consensus size: 130
37454240 CTGCAACTTC
* * * * **
37454250 AGGGAGATAAGATTTGCCCTTTTCGATATGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATT
1 AGGGAGATAAGATTCGCCATCTTCGATATGCTCCACTACTGCTTAGGGAGACAAGATCTACAATT
*
37454315 TCCAACCTATGCCACTGCTGGTCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCT
66 TCCAACCTATGCCACTACTGGTCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCT
* * *
37454380 AGGGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTACAAT
1 AGGG-AGATAAGATTCGCCATCTTCGATATGCTCCACTACTGCTTAGGGAGACAAGATCTACAAT
* *
37454445 TTCCAACCTATTCCACTACTGGTCGGGGACATAGGACTTGTG
65 TTCCAACCTATGCCACTACTGGTCAGGGACATAGGACTTGTG
37454487 ATTTCACTGA
Statistics
Matches: 94, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
130 4 0.04
131 90 0.96
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (130 bp):
AGGGAGATAAGATTCGCCATCTTCGATATGCTCCACTACTGCTTAGGGAGACAAGATCTACAATT
TCCAACCTATGCCACTACTGGTCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCT
Found at i:37456636 original size:29 final size:28
Alignment explanation
Indices: 37456578--37456645 Score: 82
Period size: 29 Copynumber: 2.4 Consensus size: 28
37456568 GCTTTTCATA
*
37456578 TTTTTATTTTGACTTTGATGGATTTCTT
1 TTTTTATTTTGACTTTGATGGATTTATT
***
37456606 TTTTTACTTTTGACTTTGATTTTTTTATT
1 TTTTTA-TTTTGACTTTGATGGATTTATT
*
37456635 TTTTCATTTTG
1 TTTTTATTTTG
37456646 TTATTGATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 11 0.32
29 23 0.68
ACGTcount: A:0.13, C:0.07, G:0.10, T:0.69
Consensus pattern (28 bp):
TTTTTATTTTGACTTTGATGGATTTATT
Found at i:37456645 original size:28 final size:27
Alignment explanation
Indices: 37456578--37456645 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 27
37456568 GCTTTTCATA
*
37456578 TTTTTATTTTGACTTTGATGGATTTCTT
1 TTTTTATTTTGACTTTGATGGATTT-AT
***
37456606 TTTTTACTTTTGACTTTGATTTTTTTAT
1 TTTTTA-TTTTGACTTTGATGGATTTAT
37456634 TTTTTCATTTTG
1 TTTTT-ATTTTG
37456646 TTATTGATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
28 17 0.50
29 17 0.50
ACGTcount: A:0.13, C:0.07, G:0.10, T:0.69
Consensus pattern (27 bp):
TTTTTATTTTGACTTTGATGGATTTAT
Found at i:37460748 original size:10 final size:10
Alignment explanation
Indices: 37460733--37460762 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
37460723 TAAAATAATT
37460733 CATTTCAAAA
1 CATTTCAAAA
37460743 CATTTCAAAA
1 CATTTCAAAA
37460753 CATTTCAAAA
1 CATTTCAAAA
37460763 ATCATAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (10 bp):
CATTTCAAAA
Found at i:37460880 original size:21 final size:21
Alignment explanation
Indices: 37460856--37460895 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
37460846 GGACTATATT
37460856 GAAAACACTT-GAAAAATTTAG
1 GAAAA-ACTTAGAAAAATTTAG
*
37460877 GAAAAATTTAGAAAAATTT
1 GAAAAACTTAGAAAAATTT
37460896 TAATTGCAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.55, C:0.05, G:0.12, T:0.28
Consensus pattern (21 bp):
GAAAAACTTAGAAAAATTTAG
Found at i:37460897 original size:11 final size:11
Alignment explanation
Indices: 37460866--37460895 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
37460856 GAAAACACTT
37460866 GAAAAATTTAG
1 GAAAAATTTAG
37460877 GAAAAATTTA-
1 GAAAAATTTAG
37460887 GAAAAATTT
1 GAAAAATTT
37460896 TAATTGCAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.57, C:0.00, G:0.13, T:0.30
Consensus pattern (11 bp):
GAAAAATTTAG
Found at i:37464401 original size:16 final size:16
Alignment explanation
Indices: 37464380--37464412 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
37464370 CGCTGTATTG
37464380 GAATAGAGGCGTAATA
1 GAATAGAGGCGTAATA
37464396 GAATAGAGGCGTAATA
1 GAATAGAGGCGTAATA
37464412 G
1 G
37464413 CAAATCAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.33, T:0.18
Consensus pattern (16 bp):
GAATAGAGGCGTAATA
Found at i:37464664 original size:18 final size:17
Alignment explanation
Indices: 37464636--37464677 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
37464626 AACATAATTA
37464636 TTAAT-AAATATAT--T
1 TTAATAAAATATATAAT
37464650 TTAATTAAAATATATAAT
1 TTAA-TAAAATATATAAT
37464668 TTAATAAAAT
1 TTAATAAAAT
37464678 TCTTAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.17
15 1 0.04
16 8 0.33
17 6 0.25
18 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TTAATAAAATATATAAT
Found at i:37464771 original size:120 final size:120
Alignment explanation
Indices: 37464623--37464994 Score: 568
Period size: 120 Copynumber: 3.1 Consensus size: 120
37464613 TTAATCATAT
*
37464623 TTTAACATAATTATTAA-TAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
1 TTTAAAATAATTA-TAATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
* * *
37464687 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
37464743 TTTAACATAATTATAATTAAATACATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATAATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* *
37464808 AAATATTCTTATATGAATTTACTAAAATTATAATATATAATAGTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * * * *
37464863 TTTAAAATAATAATTATTAAATATAATTTAA-TAAAAAATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATAATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
37464927 AAAATATTCTTATACGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 -AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
*
37464983 TCTAAAATAATT
1 TTTAAAATAATT
37464995 GATTTTGTGG
Statistics
Matches: 230, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
119 33 0.14
120 197 0.86
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (120 bp):
TTTAAAATAATTATAATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:37464809 original size:15 final size:16
Alignment explanation
Indices: 37464789--37464818 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
37464779 ATATATGATT
37464789 TAATAAA-ATTCTTAA
1 TAATAAATATTCTTAA
37464804 TAATAAATATTCTTA
1 TAATAAATATTCTTA
37464819 TATGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (16 bp):
TAATAAATATTCTTAA
Found at i:37464877 original size:13 final size:12
Alignment explanation
Indices: 37464853--37464893 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
37464843 TATAATAGTA
37464853 TAAAATATAATT
1 TAAAATATAATT
37464865 TAAAATAATAATT
1 TAAAAT-ATAATT
*
37464878 ATTAAATATAATT
1 -TAAAATATAATT
37464891 TAA
1 TAA
37464894 TAAAAAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 8 0.32
13 12 0.48
14 5 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAAATATAATT
Found at i:37464903 original size:17 final size:17
Alignment explanation
Indices: 37464881--37464915 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
37464871 AATAATTATT
37464881 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
37464898 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
37464915 A
1 A
37464916 TTCTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:37466728 original size:13 final size:13
Alignment explanation
Indices: 37466712--37466741 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
37466702 TAGACCAAGC
37466712 TTTTCAAAAGCAT
1 TTTTCAAAAGCAT
*
37466725 TTTTCATAAGCAT
1 TTTTCAAAAGCAT
37466738 TTTT
1 TTTT
37466742 TTGCAGCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.50
Consensus pattern (13 bp):
TTTTCAAAAGCAT
Found at i:37466983 original size:31 final size:31
Alignment explanation
Indices: 37466946--37467006 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
37466936 AAAGCTTCGG
*
37466946 AAATTTTGAACATACTCATGTCAGAGTTGGA
1 AAATTTTGAACATACTCATGTCAAAGTTGGA
37466977 AAATTTTGAACATACTCATGTCAAAGTTGG
1 AAATTTTGAACATACTCATGTCAAAGTTGG
37467007 GCACAAACTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (31 bp):
AAATTTTGAACATACTCATGTCAAAGTTGGA
Found at i:37474578 original size:3 final size:3
Alignment explanation
Indices: 37474570--37474629 Score: 66
Period size: 3 Copynumber: 20.0 Consensus size: 3
37474560 ATTAATATAT
* * ** *
37474570 ATA ATA ATA GTA TTA ATA GCA ATA ATA ATA GTA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
37474618 ATA ATA ACA ATA
1 ATA ATA ATA ATA
37474630 TTAAACTAAT
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:37474586 original size:21 final size:20
Alignment explanation
Indices: 37474560--37474620 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 20
37474550 AGTTAAGTAA
37474560 ATTAATATATATAATAATAGT
1 ATTAATA-ATATAATAATAGT
37474581 ATTAATAGCA-ATAATAATAGT
1 ATTAATA--ATATAATAATAGT
*
37474602 AATAATAATAATAATAATA
1 ATTAATAAT-ATAATAATA
37474621 ATAACAATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 1 0.03
21 33 0.94
22 1 0.03
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (20 bp):
ATTAATAATATAATAATAGT
Found at i:37474604 original size:9 final size:9
Alignment explanation
Indices: 37474562--37474624 Score: 56
Period size: 9 Copynumber: 6.7 Consensus size: 9
37474552 TTAAGTAAAT
37474562 TAATATATA-
1 TAATA-ATAG
37474571 TAATAATAG
1 TAATAATAG
*
37474580 TATTAATAG
1 TAATAATAG
37474589 CAATAATAATAG
1 ---TAATAATAG
*
37474601 TAATAATAA
1 TAATAATAG
*
37474610 TAATAATAA
1 TAATAATAG
37474619 TAATAA
1 TAATAA
37474625 CAATATTAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
8 3 0.06
9 36 0.77
12 8 0.17
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.35
Consensus pattern (9 bp):
TAATAATAG
Found at i:37476375 original size:96 final size:95
Alignment explanation
Indices: 37476263--37476545 Score: 298
Period size: 92 Copynumber: 3.1 Consensus size: 95
37476253 TGCTTTACTA
* *
37476263 CAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTTCACTACAAATTCAGGGAAA
1 CAACTTCAGAGAGATAAGATCT-TAATTTATAGCTTCAATCTGTTCCACTACAAATTTAGGGAAA
*
37476328 TAAGATTCGCTATCTTCAATCTGCTCCACTG
65 TAAGATTCGCTATCTTCAATCTGCTCAACTG
* * * * ** * * *
37476359 CAACTTCAGGGAGATAAGA-C-T--TGTA-A-CTTCAACCTGCTCCACTGTAACTTTATGGAGAT
1 CAACTTCAGAGAGATAAGATCTTAATTTATAGCTTCAATCTGTTCCACTACAAATTTAGGGAAAT
* * * * *
37476418 AAGATTTG--AT-AT-GATTTGCTCTACTG
66 AAGATTCGCTATCTTCAATCTGCTCAACTG
* *
37476444 TAGCTTCAGAGAGATAAGATCTATAATTTATAGCTTCAATCTGTTCCACTACAAATTTAGGGAAA
1 CAACTTCAGAGAGATAAGATCT-TAATTTATAGCTTCAATCTGTTCCACTACAAATTTAGGGAAA
*
37476509 TAAGATTCGCTATCTTCAATCTGTTCAACTG
65 TAAGATTCGCTATCTTCAATCTGCTCAACTG
37476540 CAACTT
1 CAACTT
37476546 TATGGAGATA
Statistics
Matches: 141, Mismatches: 35, Indels: 22
0.71 0.18 0.11
Matches are distributed among these distances:
85 27 0.19
86 2 0.01
87 2 0.01
88 1 0.01
89 31 0.22
90 4 0.03
91 4 0.03
92 33 0.23
93 1 0.01
94 2 0.01
95 2 0.01
96 32 0.23
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (95 bp):
CAACTTCAGAGAGATAAGATCTTAATTTATAGCTTCAATCTGTTCCACTACAAATTTAGGGAAAT
AAGATTCGCTATCTTCAATCTGCTCAACTG
Found at i:37476428 original size:181 final size:181
Alignment explanation
Indices: 37476171--37476557 Score: 560
Period size: 181 Copynumber: 2.1 Consensus size: 181
37476161 TTTAATCCGT
* * ** *
37476171 TCCACTGCAACTTCAAAGAGATAGGATTGGTTTCTTCAATCTCCTCCACAGCAACTTTATGGAGA
1 TCCACTGCAACTTCAAGGAGATAAGATTGGTAACTTCAACCTCCTCCACAGCAACTTTATGGAGA
* * *
37476236 TAAGGTTTGATATGATCTGCTTTACTACAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCA
66 TAAGATTTGATATGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTATAATTTATAGCTTCA
*
37476301 ATCTGTTTCACTACAAATTCAGGGAAATAAGATTCGCTATCTTCAATCTGC
131 ATCTGTTCCACTACAAATTCAGGGAAATAAGATTCGCTATCTTCAATCTGC
* * * *
37476352 TCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTCAACCTGCTCCACTGTAACTTTATGGAG
1 TCCACTGCAACTTCAAGGAGATAAGA-TTGGTAACTTCAACCTCCTCCACAGCAACTTTATGGAG
* ** *
37476416 ATAAGATTTGATATGATTTGCTCTACTGTAGCTTCAGAGAGATAAGATCTATAATTTATAGCTTC
65 ATAAGATTTGATATGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTATAATTTATAGCTTC
* *
37476481 AATCTGTTCCACTACAAATTTAGGGAAATAAGATTCGCTATCTTCAATCTGT
130 AATCTGTTCCACTACAAATTCAGGGAAATAAGATTCGCTATCTTCAATCTGC
* * *
37476533 TCAACTGCAACTTTATGGAGATAAG
1 TCCACTGCAACTTCAAGGAGATAAG
37476558 GTTTGATATG
Statistics
Matches: 183, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
181 181 0.99
182 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (181 bp):
TCCACTGCAACTTCAAGGAGATAAGATTGGTAACTTCAACCTCCTCCACAGCAACTTTATGGAGA
TAAGATTTGATATGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTATAATTTATAGCTTCA
ATCTGTTCCACTACAAATTCAGGGAAATAAGATTCGCTATCTTCAATCTGC
Found at i:37476563 original size:137 final size:137
Alignment explanation
Indices: 37476341--37476695 Score: 525
Period size: 137 Copynumber: 2.6 Consensus size: 137
37476331 GATTCGCTAT
* * * * *
37476341 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-G-TAACTTCAACCTGCTCCACTGT
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGA-TTCGCTATCTTCAATCTGCTCCACTGC
* *
37476404 AACTTTATGGAGATAAGATTTGATATGATTTGCTCTACTGTAGCTTCAGAGAGATAAGATCTATA
65 AACTTTATGGAGATAAGATTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTATA
37476469 ATTTATAG
130 ATTTATAG
* * * * *
37476477 CTTCAATCTGTTCCACTACAAATTTAGGGAAATAAGATTCGCTATCTTCAATCTGTTCAACTGCA
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCCACTGCA
* *
37476542 ACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTGTAA
66 ACTTTATGGAGATAAGATTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTATAA
37476607 TTTATAG
131 TTTATAG
* *
37476614 CTTCAATCTGTTCCATTGCAACTTCAGGGAAATAAGATTCGCTATGTTCAATCTGCTCCACTGCA
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCCACTGCA
* *
37476679 ACTTCAGGGAGATAAGA
66 ACTTTATGGAGATAAGA
37476696 CTTGTAAGTT
Statistics
Matches: 193, Mismatches: 24, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
135 2 0.01
136 33 0.17
137 158 0.82
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (137 bp):
CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCCACTGCA
ACTTTATGGAGATAAGATTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTATAA
TTTATAG
Found at i:37476611 original size:318 final size:315
Alignment explanation
Indices: 37476026--37476875 Score: 1127
Period size: 318 Copynumber: 2.7 Consensus size: 315
37476016 TGAAACATTT
* * * * * *
37476026 GCTATCTTCAATTTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAGCTTCCACATGTTTCAC
1 GCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGTTCCAC
* * * * * *** * *
37476091 TATAATTTTAAGGAAATAACGTCTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATCC
66 TGTAACTTTATGGAGATAA-GTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCT
* * * * * * * *
37476156 ATCA-T-T---TT-AATCCGTTCCACTGCAACTTCAAAGAGATAGGATTGGTTTCTTCAATCTCC
130 ATAATTATAGCTTCAATCTGTTCCACTGCAACTTCAAGGAAATAAGATTGCTATCTTCAATCTGC
* * *
37476215 TCCACAGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTTTACTACAACTTCAGAGAGATAA
195 TCAACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTACAACTTCAGAGAGATAA
*
37476280 GATCTGTAATTTATAGCTTCAATCTGTTTCACTACAAATTCAGGGAAATAAGATTC
260 GATCTGTAATTTATAGCTTCAATCTGTTCCACTACAAATTCAGGGAAATAAGATTC
*
37476336 GCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCAC
1 GCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGTTCCAC
* *
37476401 TGTAACTTTATGGAGATAAGATTTGATATGATTTGCTCTACTGTAGCTTCAGAGAGATAAGATCT
66 TGTAACTTTATGGAGATAAG-TTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCT
* * * *
37476466 ATAATTTATAGCTTCAATCTGTTCCACTACAAATTTAGGGAAATAAGATTCGCTATCTTCAATCT
130 ATAA-TTATAGCTTCAATCTGTTCCACTGCAACTTCAAGGAAATAAGATT-GCTATCTTCAATCT
* * *
37476531 GTTCAACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGAT
193 GCTCAACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTACAACTTCAGAGAGAT
* * *
37476596 AAGATCTGTAATTTATAGCTTCAATCTGTTCCATTGCAACTTCAGGGAAATAAGATTC
258 AAGATCTGTAATTTATAGCTTCAATCTGTTCCACTACAAATTCAGGGAAATAAGATTC
* *
37476654 GCTATGTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAAGTTCAACCTGTTCCAC
1 GCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGTTCCAC
*
37476719 TGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCT
66 TGTAACTTTATGGAGATAA-GTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCT
* * * * *
37476784 GTAACTTATAGCTTCAATCTGTTCCATTGCAACTTCAAGGAAATAATATTTGCTATGTTCAGTCT
130 ATAA-TTATAGCTTCAATCTGTTCCACTGCAACTTCAAGGAAATAAGA-TTGCTATCTTCAATCT
* * *
37476849 GCTCTACTGCAACTTCAAGGAGATAAG
193 GCTCAACTGCAACTTTATGGAGATAAG
37476876 ACTTCACTTC
Statistics
Matches: 468, Mismatches: 61, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
309 1 0.00
310 112 0.24
312 1 0.00
313 1 0.00
316 2 0.00
317 27 0.06
318 321 0.69
319 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (315 bp):
GCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGTTCCAC
TGTAACTTTATGGAGATAAGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTA
TAATTATAGCTTCAATCTGTTCCACTGCAACTTCAAGGAAATAAGATTGCTATCTTCAATCTGCT
CAACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTACAACTTCAGAGAGATAAG
ATCTGTAATTTATAGCTTCAATCTGTTCCACTACAAATTCAGGGAAATAAGATTC
Found at i:37476649 original size:92 final size:93
Alignment explanation
Indices: 37476522--37476876 Score: 379
Period size: 92 Copynumber: 3.8 Consensus size: 93
37476512 GATTCGCTAT
* * * * *
37476522 CTTCAATCTGTTCAACTGCAACTTTATGGAGATAAGGTTTGATATG-ATCTGCTCTACTGCAGCT
1 CTTCAATCTGTTCCACTGCAACTTCATGGAAATAAGATTTGATATGTATCTGCTCTACTGCAACT
37476586 TCAGAGAGATAAGATCTGTAATTTATAG
66 TCAGAGAGATAAGATCTGTAATTTATAG
* * * * *
37476614 CTTCAATCTGTTCCATTGCAACTTCAGGGAAATAAGATTCGCTATGTTCAATCTGCTCCACTGCA
1 CTTCAATCTGTTCCACTGCAACTTCATGGAAATAAGATTTGATATG-T--ATCTGCTCTACTGCA
* *
37476679 ACTTCAGGGAGATAAGA-C--T--TGTA-AG
63 ACTTCAGAGAGATAAGATCTGTAATTTATAG
* * * * *
37476704 -TTCAACCTGTTCCACTGCAACTTTATGGAGATAAGGTTTGATATG-ATCTGCTCTACTGCAGCT
1 CTTCAATCTGTTCCACTGCAACTTCATGGAAATAAGATTTGATATGTATCTGCTCTACTGCAACT
*
37476767 TCAGAGAGATAAGATCTGTAACTTATAG
66 TCAGAGAGATAAGATCTGTAATTTATAG
* * * *
37476795 CTTCAATCTGTTCCATTGCAACTTCAAGGAAATAATATTTGCTATGTTCAGTCTGCTCTACTGCA
1 CTTCAATCTGTTCCACTGCAACTTCATGGAAATAAGATTTGATATG-T-A-TCTGCTCTACTGCA
37476860 ACTTCA-AGGAGATAAGA
63 ACTTCAGA-GAGATAAGA
37476877 CTTCACTTCA
Statistics
Matches: 213, Mismatches: 34, Indels: 28
0.77 0.12 0.10
Matches are distributed among these distances:
85 29 0.14
86 1 0.00
88 1 0.00
89 37 0.17
90 4 0.02
91 5 0.02
92 75 0.35
93 1 0.00
95 3 0.01
96 57 0.27
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (93 bp):
CTTCAATCTGTTCCACTGCAACTTCATGGAAATAAGATTTGATATGTATCTGCTCTACTGCAACT
TCAGAGAGATAAGATCTGTAATTTATAG
Found at i:37476747 original size:181 final size:183
Alignment explanation
Indices: 37476478--37476880 Score: 641
Period size: 181 Copynumber: 2.2 Consensus size: 183
37476468 AATTTATAGC
* * * * * * *
37476478 TTCAATCTGTTCCACTACAAATTTAGGGAAATAAGA-TTCGCTATCTTCAATCTGTTCAACTGCA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTCGCTAACTTCAACCTGTTCAACTGCA
37476542 ACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTGTAA
66 ACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTGTAA
* *
37476607 TTTATAGCTTCAATCTGTTCCATTGCAACTTCAGGGAAATAAGATTCGCTATG
131 CTTATAGCTTCAATCTGTTCCATTGCAACTTCAAGGAAATAAGATTCGCTATG
* *
37476660 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-G-TAAGTTCAACCTGTTCCACTGCA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTCGCTAACTTCAACCTGTTCAACTGCA
37476723 ACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTGTAA
66 ACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTGTAA
* *
37476788 CTTATAGCTTCAATCTGTTCCATTGCAACTTCAAGGAAATAATATTTGCTATG
131 CTTATAGCTTCAATCTGTTCCATTGCAACTTCAAGGAAATAAGATTCGCTATG
* * *
37476841 TTCAGTCTGCTCTACTGCAACTTCAAGGAGATAAGACTTC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTC
37476881 ACTTCAATCC
Statistics
Matches: 203, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
181 169 0.83
182 32 0.16
183 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (183 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTCGCTAACTTCAACCTGTTCAACTGCA
ACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTGTAA
CTTATAGCTTCAATCTGTTCCATTGCAACTTCAAGGAAATAAGATTCGCTATG
Found at i:37481645 original size:18 final size:18
Alignment explanation
Indices: 37481622--37481656 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
37481612 ATGATTTGAC
*
37481622 AAAGAATTCAAAATAATG
1 AAAGAATCCAAAATAATG
37481640 AAAGAATCCAAAATAAT
1 AAAGAATCCAAAATAAT
37481657 TACTTATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.63, C:0.09, G:0.09, T:0.20
Consensus pattern (18 bp):
AAAGAATCCAAAATAATG
Found at i:37489564 original size:12 final size:12
Alignment explanation
Indices: 37489549--37489605 Score: 60
Period size: 12 Copynumber: 4.8 Consensus size: 12
37489539 AATGATATAT
*
37489549 ATAAAAATAATA
1 ATAACAATAATA
* * *
37489561 ATAATAGTATTA
1 ATAACAATAATA
*
37489573 ATAGCAATAATA
1 ATAACAATAATA
*
37489585 ATAACAATACTA
1 ATAACAATAATA
37489597 ATAACAATA
1 ATAACAATA
37489606 TTAAACTAAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (12 bp):
ATAACAATAATA
Found at i:37491565 original size:34 final size:34
Alignment explanation
Indices: 37491517--37491598 Score: 119
Period size: 34 Copynumber: 2.4 Consensus size: 34
37491507 GATACACGAG
* * * *
37491517 TAAACTACAACACACCAGATAGCTTGTAGGAGCT
1 TAAACTACACCACACCAGATAGCTCGCAAGAGCT
37491551 TAAACTACACCACACCAGATAGCTCGCAAGAGCT
1 TAAACTACACCACACCAGATAGCTCGCAAGAGCT
*
37491585 TAAACTATACCACA
1 TAAACTACACCACA
37491599 ACATGACACC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.40, C:0.28, G:0.13, T:0.18
Consensus pattern (34 bp):
TAAACTACACCACACCAGATAGCTCGCAAGAGCT
Found at i:37498248 original size:21 final size:21
Alignment explanation
Indices: 37498222--37498267 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
37498212 TTTTCTGTCT
37498222 TTTATTAACTAAATAACTGAA
1 TTTATTAACTAAATAACTGAA
37498243 TTTATTAACTAAATAACTGAA
1 TTTATTAACTAAATAACTGAA
37498264 TTTA
1 TTTA
37498268 AATAGAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (21 bp):
TTTATTAACTAAATAACTGAA
Found at i:37498398 original size:19 final size:19
Alignment explanation
Indices: 37498374--37498414 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
37498364 TGATTTATTC
37498374 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
37498393 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
37498412 TAA
1 TAA
37498415 CTTTAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.37
Consensus pattern (19 bp):
TAAGATTTATCTACCTAAA
Found at i:37517783 original size:16 final size:16
Alignment explanation
Indices: 37517762--37517806 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
37517752 ATATATTTTC
* *
37517762 TAAATATAATAATGTA
1 TAAATAAAATAATGAA
*
37517778 TAAATAAAATCATGAA
1 TAAATAAAATAATGAA
*
37517794 TATATAAAATAAT
1 TAAATAAAATAAT
37517807 ACTTGAAATC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (16 bp):
TAAATAAAATAATGAA
Found at i:37518371 original size:91 final size:91
Alignment explanation
Indices: 37518167--37518372 Score: 253
Period size: 92 Copynumber: 2.3 Consensus size: 91
37518157 TTTAAGGGGT
*
37518167 AAAAAACCCTCAAAC-T-TT--AAAAAAAAACAATTAAGCCCCTCTTTTTTTTTTGCACTCAATT
1 AAAAAACCCTCAAACTTCTTCAAAAAAAAAACAATTAAGCCCCTCTTTTTTTTATGCACTCAATT
* *
37518228 GAGCAATTGAATTTTCAAAATGTATC
66 GAGCAATTGAACTTTCAAAATGCATC
**
37518254 AAAAAGGCCTCAAACTTCTTCAAAAAAAAAAGCAATTAAGCCCCTGC-TTTTTTTAT-CACTCAA
1 AAAAAACCCTCAAACTTCTTCAAAAAAAAAA-CAATTAAGCCCCT-CTTTTTTTTATGCACTCAA
* *
37518317 TTGGGCACTTGAACTTTCAAAATGCATC
64 TTGAGCAATTGAACTTTCAAAATGCATC
* * *
37518345 AAAAAAACCCTTAAATTTTTTCAAAAAA
1 -AAAAAACCCTCAAACTTCTTCAAAAAA
37518373 GCAAGTAAGC
Statistics
Matches: 100, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
87 13 0.13
88 1 0.01
89 2 0.02
91 40 0.40
92 43 0.43
93 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (91 bp):
AAAAAACCCTCAAACTTCTTCAAAAAAAAAACAATTAAGCCCCTCTTTTTTTTATGCACTCAATT
GAGCAATTGAACTTTCAAAATGCATC
Found at i:37518431 original size:20 final size:21
Alignment explanation
Indices: 37518394--37518440 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
37518384 TTGCCCTTAT
* *
37518394 TAAAAATTAGAAAGAAAATTA
1 TAAAAAATAGAAAAAAAATTA
37518415 TAAAAAATA-AAAAAAAATTA
1 TAAAAAATAGAAAAAAAATTA
*
37518435 GAAAAA
1 TAAAAA
37518441 TTATTAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (21 bp):
TAAAAAATAGAAAAAAAATTA
Found at i:37518495 original size:18 final size:19
Alignment explanation
Indices: 37518464--37518506 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
37518454 ATAAAATATA
*
37518464 AAAAATAGATTTTTTTTTT
1 AAAAATAGATTTTTTTTAT
*
37518483 AAAATTAGA-TTTTTTTAT
1 AAAAATAGATTTTTTTTAT
37518501 AAAAAT
1 AAAAAT
37518507 CATAAAGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
AAAAATAGATTTTTTTTAT
Found at i:37518505 original size:19 final size:19
Alignment explanation
Indices: 37518460--37518506 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
37518450 TTTAATAAAA
*
37518460 TATAAAAAATAGATTTTTT
1 TATAAAAATTAGATTTTTT
* *
37518479 TTTTAAAATTAGATTTTTT
1 TATAAAAATTAGATTTTTT
37518498 TATAAAAAT
1 TATAAAAAT
37518507 CATAAAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (19 bp):
TATAAAAATTAGATTTTTT
Found at i:37518792 original size:56 final size:57
Alignment explanation
Indices: 37518707--37518829 Score: 160
Period size: 56 Copynumber: 2.2 Consensus size: 57
37518697 ATTTACGAAC
* * *
37518707 TTTATATTTCTTTACATTTGGTATAATTTTCTTACGACT-TTATAAAATTTTATAATTT
1 TTTATATTTCTATACATTT-GTATAATTTT-TTACGACTCTTATAAAAGTTTACAATTT
* * *
37518765 TTTATATTTCTATATATTT-TATGATTTTTTACGATTCTTATAAAAGTTTACAATTT
1 TTTATATTTCTATACATTTGTATAATTTTTTACGACTCTTATAAAAGTTTACAATTT
37518821 TTTATATTT
1 TTTATATTT
37518830 TTTTACGATT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
55 7 0.12
56 34 0.59
58 17 0.29
ACGTcount: A:0.29, C:0.07, G:0.05, T:0.59
Consensus pattern (57 bp):
TTTATATTTCTATACATTTGTATAATTTTTTACGACTCTTATAAAAGTTTACAATTT
Found at i:37518802 original size:27 final size:26
Alignment explanation
Indices: 37518753--37518806 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
37518743 ACTTTATAAA
*
37518753 ATTTTATAATTTTTTATATTTCTATAT
1 ATTTTATAATTTTTTAGATTTCT-TAT
*
37518780 ATTTTATGATTTTTTACGA-TTCTTAT
1 ATTTTATAATTTTTTA-GATTTCTTAT
37518806 A
1 A
37518807 AAAGTTTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.17
27 19 0.79
28 1 0.04
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.63
Consensus pattern (26 bp):
ATTTTATAATTTTTTAGATTTCTTAT
Found at i:37518834 original size:20 final size:20
Alignment explanation
Indices: 37518811--37518848 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37518801 CTTATAAAAG
*
37518811 TTTACAATTTTTTATATTTT
1 TTTACAATTTTTAATATTTT
*
37518831 TTTACGATTTTTAATATT
1 TTTACAATTTTTAATATT
37518849 GGAATTTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (20 bp):
TTTACAATTTTTAATATTTT
Found at i:37519128 original size:89 final size:90
Alignment explanation
Indices: 37518944--37519134 Score: 280
Period size: 89 Copynumber: 2.1 Consensus size: 90
37518934 GGCTTAAATT
* * *
37518944 TTTTTTTGAAAAAGTTTTAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGC
1 TTTTTTTG-AAAAGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAAATGAGTGC
* *
37519009 AAAAAAAAACGTAGGGGCTTAATTGC
65 AAAAAAAAACGAAGGGGCTTAATTAC
*
37519035 --TTTTTGAAAAGCTTTGAGGGCCTTTTTGATGCATTTTGAAGGTTCAAGTACCCAAATGAGTGC
1 TTTTTTTGAAAAG-TTTGAGGGCCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAAATGAGTGC
*
37519098 AAAAAAATA-GAAGGGGCTTAATTAC
65 AAAAAAAAACGAAGGGGCTTAATTAC
37519123 TTTTTTTGAAAA
1 TTTTTTTGAAAA
37519135 AACTTGACGA
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
88 19 0.21
89 61 0.68
90 10 0.11
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (90 bp):
TTTTTTTGAAAAGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAAATGAGTGCA
AAAAAAAACGAAGGGGCTTAATTAC
Found at i:37523207 original size:27 final size:27
Alignment explanation
Indices: 37523169--37523224 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
37523159 TCTAAATGTA
37523169 GACTAAGATTTTGAAAAGGAGTTTAGG
1 GACTAAGATTTTGAAAAGGAGTTTAGG
37523196 GACTAAGATTTTGAAAAGGAGTTTAGG
1 GACTAAGATTTTGAAAAGGAGTTTAGG
37523223 GA
1 GA
37523225 TTCATAGGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.04, G:0.30, T:0.29
Consensus pattern (27 bp):
GACTAAGATTTTGAAAAGGAGTTTAGG
Found at i:37532487 original size:40 final size:40
Alignment explanation
Indices: 37532384--37532495 Score: 152
Period size: 40 Copynumber: 2.8 Consensus size: 40
37532374 CAGCCGCAAA
* * * * *
37532384 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACCCG
*
37532424 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACCCG
* *
37532464 CATAATTGCCTTCGGGTCATAGCCTGGATATA
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
37532496 AAATATTCGT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (40 bp):
CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACCCG
Found at i:37532730 original size:289 final size:288
Alignment explanation
Indices: 37532207--37532744 Score: 1067
Period size: 289 Copynumber: 1.9 Consensus size: 288
37532197 CTAAAAGCCG
37532207 AAAAATTCGTTAGCCGATCACACGAATACTATTTAAAATGAATCGACTTTTCCAATGCACATGCA
1 AAAAATTCGTTAGCCGATCACACGAATACTATTTAAAATGAATCGACTTTTCCAATGCACATGCA
37532272 AACATACCGTATCGTTTGGGTTGGTCGAGCATATTTATTAAATTAGTTACAGCACAAAACGCTCA
66 AACATACCGTATCGTTTGGGTTGGTCGAGCATATTTATTAAATTAGTTACAGCACAAAACGCTCA
37532337 CATTCAAACCCAAGTTTCTTCGGTATTTAACCGAATACAGCCGCAAACATATTTGCCTTCGGGTC
131 CATTCAAACCCAAGTTTCTTCGGTATTTAACCGAATACAGCCGCAAACATATTTGCCTTCGGGTC
37532402 TTAACCCGGACATATGAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCAT
196 TTAACCCGGACATATGAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCAT
37532467 AATTGCCTTCGGGTCATAGCCTGGATAT
261 AATTGCCTTCGGGTCATAGCCTGGATAT
37532495 AAAATATTCGTTAGCCGATCACACGAATACTATTTAAAATGAATCGACTTTTCCAATGCACATGC
1 AAAA-ATTCGTTAGCCGATCACACGAATACTATTTAAAATGAATCGACTTTTCCAATGCACATGC
37532560 AAACATACCGTATCGTTTGGGTTGGTCGAGCATATTTATTAAATTAGTTACAGCACAAAACGCTC
65 AAACATACCGTATCGTTTGGGTTGGTCGAGCATATTTATTAAATTAGTTACAGCACAAAACGCTC
37532625 ACATTCAAACCCAAGTTTCTTCGGTATTTAACCGAATACAGCCGCAAACATATTTGCCTTCGGGT
130 ACATTCAAACCCAAGTTTCTTCGGTATTTAACCGAATACAGCCGCAAACATATTTGCCTTCGGGT
37532690 CTTAACCCGGACATATGAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATA
195 CTTAACCCGGACATATGAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATA
37532745 ATCCAATGTT
Statistics
Matches: 249, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
288 4 0.02
289 245 0.98
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (288 bp):
AAAAATTCGTTAGCCGATCACACGAATACTATTTAAAATGAATCGACTTTTCCAATGCACATGCA
AACATACCGTATCGTTTGGGTTGGTCGAGCATATTTATTAAATTAGTTACAGCACAAAACGCTCA
CATTCAAACCCAAGTTTCTTCGGTATTTAACCGAATACAGCCGCAAACATATTTGCCTTCGGGTC
TTAACCCGGACATATGAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCAT
AATTGCCTTCGGGTCATAGCCTGGATAT
Found at i:37533838 original size:107 final size:107
Alignment explanation
Indices: 37533652--37533864 Score: 417
Period size: 107 Copynumber: 2.0 Consensus size: 107
37533642 ATATCTCAAG
*
37533652 ATCGGTAACTCTTTTGTTTTTATAGTTTCTTTTGTAAGAAAATAGACTCTTCAAGCTTTAATGAC
1 ATCGGTAACTCTTTTGTTTTTATAGTTTCTTTTGTAAGAAAATAGACTCTTCAAGCTTTAATGAA
37533717 ATAATTCACTCAGCTTCTAATTCAACTCCTATAATTTATGGT
66 ATAATTCACTCAGCTTCTAATTCAACTCCTATAATTTATGGT
37533759 ATCGGTAACTCTTTTGTTTTTATAGTTTCTTTTGTAAGAAAATAGACTCTTCAAGCTTTAATGAA
1 ATCGGTAACTCTTTTGTTTTTATAGTTTCTTTTGTAAGAAAATAGACTCTTCAAGCTTTAATGAA
37533824 ATAATTCACTCAGCTTCTAATTCAACTCCTATAATTTATGG
66 ATAATTCACTCAGCTTCTAATTCAACTCCTATAATTTATGG
37533865 CGATTTTCCA
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
107 105 1.00
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (107 bp):
ATCGGTAACTCTTTTGTTTTTATAGTTTCTTTTGTAAGAAAATAGACTCTTCAAGCTTTAATGAA
ATAATTCACTCAGCTTCTAATTCAACTCCTATAATTTATGGT
Found at i:37535726 original size:29 final size:29
Alignment explanation
Indices: 37535655--37535806 Score: 168
Period size: 29 Copynumber: 5.3 Consensus size: 29
37535645 ACCCCTACAT
* *
37535655 ACATGCATATGGCCCA-CTAGGTCCAA-TC
1 ACATTCATATGGCCCATC-AGGCCCAATTC
* * *
37535683 TCATTTATATGGCCCATCCGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
*
37535712 GCATTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
*
37535741 ACATTCATATGGCCCATTAGGCCCAA-TC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* * * *
37535769 TCATTTATATGGCCCATCCGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAATTC
37535798 ACA-TCATAT
1 ACATTCATAT
37535807 TCATGCTCAC
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
28 48 0.46
29 57 0.54
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAATTC
Found at i:37535738 original size:57 final size:57
Alignment explanation
Indices: 37535660--37535806 Score: 174
Period size: 57 Copynumber: 2.6 Consensus size: 57
37535650 TACATACATG
* * * *
37535660 CATATGGCCCA-CTAGGTCCAA-TCTCATTTATATGGCCCATCCGGCCCAATTCGCATT
1 CATATGGCCCATC-AGGCCCAATTCACATTCATATGGCCCATCAGGCCCAA-TCGCATT
* *
37535717 CATATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATCTCATT
1 CATATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATCAGGCCCAATCGCATT
* * *
37535774 TATATGGCCCATCCGGCCCAAATCACA-TCATAT
1 CATATGGCCCATCAGGCCCAATTCACATTCATAT
37535807 TCATGCTCAC
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
56 6 0.08
57 48 0.61
58 25 0.32
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.27
Consensus pattern (57 bp):
CATATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATCAGGCCCAATCGCATT
Found at i:37542632 original size:58 final size:56
Alignment explanation
Indices: 37542542--37542649 Score: 137
Period size: 57 Copynumber: 1.9 Consensus size: 56
37542532 GGCCCACTAG
*
37542542 GCCCAATCTCATTTATATGGCCCATCCAGCCCAATTCGCATTCATATGGCCAATCAA
1 GCCCAATCTCATTCATATGGCCCATCCAGCCCAA-TCGCATTCATATGGCCAATCAA
* * * *
37542599 GCCCAATTTACATTCATATGGCCCAT-TAGGCCCAATCTCATTTATATGGCC
1 GCCCAATCT-CATTCATATGGCCCATCCA-GCCCAATCGCATTCATATGGCC
37542650 CATCCAGTCC
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
57 23 0.52
58 21 0.48
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (56 bp):
GCCCAATCTCATTCATATGGCCCATCCAGCCCAATCGCATTCATATGGCCAATCAA
Found at i:37542652 original size:28 final size:28
Alignment explanation
Indices: 37542527--37542653 Score: 141
Period size: 29 Copynumber: 4.5 Consensus size: 28
37542517 TACATACATG
37542527 CATATGGCCCA-CTAGGCCCAATCTCATT
1 CATATGGCCCATC-AGGCCCAATCTCATT
* *
37542555 TATATGGCCCATCCA-GCCCAATTCGCATT
1 CATATGGCCCAT-CAGGCCCAA-TCTCATT
* * *
37542584 CATATGGCCAATCAAGCCCAATTTACATT
1 CATATGGCCCATCAGGCCCAATCT-CATT
*
37542613 CATATGGCCCATTAGGCCCAATCTCATT
1 CATATGGCCCATCAGGCCCAATCTCATT
*
37542641 TATATGGCCCATC
1 CATATGGCCCATC
37542654 CAGTCCAAAT
Statistics
Matches: 82, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
28 34 0.41
29 47 0.57
30 1 0.01
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (28 bp):
CATATGGCCCATCAGGCCCAATCTCATT
Found at i:37542671 original size:28 final size:28
Alignment explanation
Indices: 37542528--37542673 Score: 111
Period size: 29 Copynumber: 5.1 Consensus size: 28
37542518 ACATACATGC
* *
37542528 ATATGGCCCA-CTAGGCCC-AATCTCATTT
1 ATATGGCCCATCCA-GCCCAAATCACA-TT
* *
37542556 ATATGGCCCATCCAGCCCAATTCGCATT
1 ATATGGCCCATCCAGCCCAAATCACATT
* * * *
37542584 CATATGGCCAATCAAGCCCAATTTACATT
1 -ATATGGCCCATCCAGCCCAAATCACATT
* *
37542613 CATATGGCCCAT-TAGGCCC-AATCTCATTT
1 -ATATGGCCCATCCA-GCCCAAATCACA-TT
*
37542642 ATATGGCCCATCCAGTCCAAATCACATT
1 ATATGGCCCATCCAGCCCAAATCACATT
37542670 ATAT
1 ATAT
37542674 TCATGCTCAC
Statistics
Matches: 96, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
28 41 0.43
29 55 0.57
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.28
Consensus pattern (28 bp):
ATATGGCCCATCCAGCCCAAATCACATT
Found at i:37551025 original size:48 final size:48
Alignment explanation
Indices: 37550954--37551046 Score: 177
Period size: 48 Copynumber: 1.9 Consensus size: 48
37550944 TCTGAATCAA
37550954 AGATTGAATCTGTACCTATTGTTTGTGAGTTTTCAGATGTATTTCCAT
1 AGATTGAATCTGTACCTATTGTTTGTGAGTTTTCAGATGTATTTCCAT
*
37551002 AGATTGAATCTGTACCTATTGTTTGTGAGTTTTCAGATTTATTTC
1 AGATTGAATCTGTACCTATTGTTTGTGAGTTTTCAGATGTATTTC
37551047 TAGAAGAATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.23, C:0.12, G:0.18, T:0.47
Consensus pattern (48 bp):
AGATTGAATCTGTACCTATTGTTTGTGAGTTTTCAGATGTATTTCCAT
Done.