Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 126 of 187
Found at i:37554180 original size:26 final size:24
Alignment explanation
Indices: 37554139--37554274 Score: 107
Period size: 26 Copynumber: 5.6 Consensus size: 24
37554129 GCAGACTACC
*
37554139 TCAGCTCGTATGAGCTTACTGATATA
1 TCAGCTCGTAAGAGCTTACTG-T-TA
* *
37554165 TCAGCTCGTAAAAGCTTACTGTTC
1 TCAGCTCGTAAGAGCTTACTGTTA
*
37554189 TCAGCTCGTCAGAGCTTACTGTT-
1 TCAGCTCGTAAGAGCTTACTGTTA
* *
37554212 TCAGCTC-AATAGAGCTTACTGTCCA
1 TCAGCTCGTA-AGAGCTTACTGT-TA
* * * *
37554237 TCAGCTCAGGAGGAGCTTACCGTCA
1 TCAGCTC-GTAAGAGCTTACTGTTA
*
37554262 T-AGCTCGAAAGAG
1 TCAGCTCGTAAGAG
37554275 TGAATATGAT
Statistics
Matches: 92, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
23 24 0.26
24 27 0.29
25 11 0.12
26 29 0.32
27 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (24 bp):
TCAGCTCGTAAGAGCTTACTGTTA
Found at i:37554197 original size:24 final size:24
Alignment explanation
Indices: 37554138--37554243 Score: 92
Period size: 24 Copynumber: 4.3 Consensus size: 24
37554128 TGCAGACTAC
**
37554138 CTCAGCTCGTATGAGCTTACTGATAT
1 CTCAGCTCGTAAAAGCTTACTG-T-T
*
37554164 ATCAGCTCGTAAAAGCTTACTGTT
1 CTCAGCTCGTAAAAGCTTACTGTT
* *
37554188 CTCAGCTCGTCAGAGCTTACTGTT
1 CTCAGCTCGTAAAAGCTTACTGTT
*
37554212 -TCAGCTC--AATAGAGCTTACTGTC
1 CTCAGCTCGTAA-A-AGCTTACTGTT
37554235 CATCAGCTC
1 C-TCAGCTC
37554244 AGGAGGAGCT
Statistics
Matches: 67, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
21 1 0.01
23 17 0.25
24 22 0.33
25 8 0.12
26 19 0.28
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (24 bp):
CTCAGCTCGTAAAAGCTTACTGTT
Found at i:37554426 original size:19 final size:19
Alignment explanation
Indices: 37554402--37554464 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
37554392 AAATCTATGC
37554402 GTTATACGGATGAATTATT
1 GTTATACGGATGAATTATT
* *
37554421 GTTATATGGATGAAGTATT
1 GTTATACGGATGAATTATT
* * *
37554440 GTTTAAACGGATGAGTTACT
1 G-TTATACGGATGAATTATT
37554460 GTTAT
1 GTTAT
37554465 CGAATGATTT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
19 21 0.60
20 14 0.40
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (19 bp):
GTTATACGGATGAATTATT
Found at i:37557503 original size:21 final size:21
Alignment explanation
Indices: 37557463--37557503 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37557453 AATTAAATAA
*
37557463 TAATAAAACTTAAGACAATTT
1 TAATAAAAATTAAGACAATTT
* *
37557484 TAATAAAAATTGAGAGAATT
1 TAATAAAAATTAAGACAATT
37557504 GAGAGAAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.32
Consensus pattern (21 bp):
TAATAAAAATTAAGACAATTT
Found at i:37557528 original size:25 final size:26
Alignment explanation
Indices: 37557498--37557547 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
37557488 AAAAATTGAG
37557498 AGAATTGAGAGAAA-ATTAAAAAAAT
1 AGAATTGAGAGAAAGATTAAAAAAAT
*
37557523 AGAATTGAGAGAAAGTTTAAAAAAA
1 AGAATTGAGAGAAAGATTAAAAAAA
37557548 GAAAATTTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.62, C:0.00, G:0.18, T:0.20
Consensus pattern (26 bp):
AGAATTGAGAGAAAGATTAAAAAAAT
Found at i:37557554 original size:26 final size:25
Alignment explanation
Indices: 37557500--37557554 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 25
37557490 AAATTGAGAG
* *
37557500 AATTGAGAGAAAATTAAAAAAATAG
1 AATTGAGAGAAAATTAAAAAAAGAA
*
37557525 AATTGAGAGAAAGTTTAAAAAAAGAA
1 AATTGAGAGAAA-ATTAAAAAAAGAA
37557551 AATT
1 AATT
37557555 TCGTAATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.62, C:0.00, G:0.16, T:0.22
Consensus pattern (25 bp):
AATTGAGAGAAAATTAAAAAAAGAA
Found at i:37559709 original size:29 final size:29
Alignment explanation
Indices: 37559667--37559722 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
37559657 AATAGATTTG
*
37559667 AATAGATTTGAAGAGTAAATCAAATGACT
1 AATAGATTTCAAGAGTAAATCAAATGACT
*
37559696 AATAGATTTCAAGAGTAAATTAAATGA
1 AATAGATTTCAAGAGTAAATCAAATGA
37559723 ATATGAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.50, C:0.05, G:0.16, T:0.29
Consensus pattern (29 bp):
AATAGATTTCAAGAGTAAATCAAATGACT
Found at i:37560161 original size:79 final size:79
Alignment explanation
Indices: 37560030--37560188 Score: 309
Period size: 79 Copynumber: 2.0 Consensus size: 79
37560020 AAATAATGCA
37560030 TGTTTATTAAATAGGCCAGGCTTTGGGTAAGTTTTCTTTGGGCCCAGGCTCGACCAAAATTTGCC
1 TGTTTATTAAATAGGCCAGGCTTTGGGTAAGTTTTCTTTGGGCCCAGGCTCGACCAAAATTTGCC
37560095 TAAATTTTTTTCAC
66 TAAATTTTTTTCAC
*
37560109 TGTTTTTTAAATAGGCCAGGCTTTGGGTAAGTTTTCTTTGGGCCCAGGCTCGACCAAAATTTGCC
1 TGTTTATTAAATAGGCCAGGCTTTGGGTAAGTTTTCTTTGGGCCCAGGCTCGACCAAAATTTGCC
37560174 TAAATTTTTTTCAC
66 TAAATTTTTTTCAC
37560188 T
1 T
37560189 ATTGTTTGCA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (79 bp):
TGTTTATTAAATAGGCCAGGCTTTGGGTAAGTTTTCTTTGGGCCCAGGCTCGACCAAAATTTGCC
TAAATTTTTTTCAC
Found at i:37564704 original size:47 final size:47
Alignment explanation
Indices: 37563485--37564669 Score: 2208
Period size: 47 Copynumber: 25.2 Consensus size: 47
37563475 TTAGGATTTT
** * * * * *
37563485 ATGTGATGAATGTGAATGTGTATATATGAGATAAGCCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
37563532 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
37563579 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37563626 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
37563673 ATGTGATGAATGTGAACATGCATCTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
37563720 ATGTGATGAATGTGAACATGCATCTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37563767 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37563814 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37563861 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37563908 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37563955 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37564002 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37564049 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37564096 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37564143 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37564190 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37564237 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37564284 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37564331 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37564378 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37564425 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37564472 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37564519 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
37564566 ATGTGATGAATGTGAATATGCATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
37564613 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37564660 ATGTGATGAA
1 ATGTGATGAA
37564670 CGTGGAAGTG
Statistics
Matches: 1121, Mismatches: 17, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 1121 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:37564739 original size:46 final size:46
Alignment explanation
Indices: 37564683--37564819 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 46
37564673 GGAAGTGTAT
* *
37564683 ATATGTGGTAAAGTCGAATGGCTAATGCAAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
37564729 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
37564775 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
37564820 TGTATATATA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 83 1.00
ACGTcount: A:0.36, C:0.09, G:0.30, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:37566920 original size:40 final size:40
Alignment explanation
Indices: 37566744--37566966 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
37566734 TCCTCGTTCA
* * * * *
37566744 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
37566783 AATGCCTTCGGGACATAACCCGAATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37566823 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
37566863 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * * *
37566903 AAGGCCTTC-GGATCTTAATCCAGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
37566943 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37566967 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 36 0.23
40 112 0.72
41 8 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:37569057 original size:22 final size:21
Alignment explanation
Indices: 37569031--37569083 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
37569021 CGTAACAAAC
*
37569031 ATAAACAAAAAATATATAATAT
1 ATAAA-AAAAAACATATAATAT
* * *
37569053 ATAAATAAGAAGCCTATAATAT
1 ATAAA-AAAAAACATATAATAT
37569075 ATAAAAAAA
1 ATAAAAAAA
37569084 TTAATATTGT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 3 0.12
22 22 0.88
ACGTcount: A:0.66, C:0.06, G:0.04, T:0.25
Consensus pattern (21 bp):
ATAAAAAAAAACATATAATAT
Found at i:37576833 original size:46 final size:46
Alignment explanation
Indices: 37576766--37576937 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
37576756 AACCCGCCCC
*
37576766 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
37576812 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * * *
37576860 TCA-CGAACTCAGACTCAACTCAAGGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
37576905 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
37576938 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 58 0.56
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:37576879 original size:93 final size:93
Alignment explanation
Indices: 37576771--37576941 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
37576761 GCCCCTAAGT
* * *
37576771 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37576836 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
37576864 GAACTCAGACTCAACTCAAGGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37576929 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37576942 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37577445 original size:74 final size:74
Alignment explanation
Indices: 37577324--37577473 Score: 273
Period size: 74 Copynumber: 2.0 Consensus size: 74
37577314 CAAATTAATC
* *
37577324 TTATTTAATACATACATTCATCAAAACAGCATTTAATACGAACTTTGGAAAAATTACACTTTTGC
1 TTATTTAATACATACATTCATCAAAACAACATTTAATACGAACTTTGGAAAAACTACACTTTTGC
37577389 CCCTAAACT
66 CCCTAAACT
*
37577398 TTATTTAATGCATACATTCATCAAAACAACATTTAATACGAACTTTGGAAAAACTACACTTTTGC
1 TTATTTAATACATACATTCATCAAAACAACATTTAATACGAACTTTGGAAAAACTACACTTTTGC
37577463 CCCTAAACT
66 CCCTAAACT
37577472 TT
1 TT
37577474 TGCATAATTA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.34
Consensus pattern (74 bp):
TTATTTAATACATACATTCATCAAAACAACATTTAATACGAACTTTGGAAAAACTACACTTTTGC
CCCTAAACT
Found at i:37577472 original size:30 final size:30
Alignment explanation
Indices: 37577438--37577497 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
37577428 ATTTAATACG
37577438 AACTTTGGAAAAACTACACTTTTGCCCCTA
1 AACTTTGGAAAAACTACACTTTTGCCCCTA
* * * *
37577468 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAACTACACTTTTGCCCCTA
37577498 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (30 bp):
AACTTTGGAAAAACTACACTTTTGCCCCTA
Found at i:37578331 original size:11 final size:11
Alignment explanation
Indices: 37578315--37578340 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
37578305 TTACATATTT
37578315 TCAAATTTCTC
1 TCAAATTTCTC
37578326 TCAAATTTCTC
1 TCAAATTTCTC
37578337 TCAA
1 TCAA
37578341 TTCCCACTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.42
Consensus pattern (11 bp):
TCAAATTTCTC
Found at i:37579372 original size:27 final size:27
Alignment explanation
Indices: 37579334--37579388 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
37579324 GAACAATTTT
37579334 AATGGAACGCTCGATACCGGTGGCCAC
1 AATGGAACGCTCGATACCGGTGGCCAC
37579361 AATGGAACGCTCGATACCGGTGGCCAC
1 AATGGAACGCTCGATACCGGTGGCCAC
37579388 A
1 A
37579389 TACTTTCATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.29, G:0.29, T:0.15
Consensus pattern (27 bp):
AATGGAACGCTCGATACCGGTGGCCAC
Found at i:37581279 original size:21 final size:20
Alignment explanation
Indices: 37581255--37581293 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37581245 GTGTAAATGT
37581255 AGTAACATAATTGTCATTTTA
1 AGTAACATAA-TGTCATTTTA
**
37581276 AGTAATTTAATGTCATTT
1 AGTAACATAATGTCATTT
37581294 ATATGATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.46
Consensus pattern (20 bp):
AGTAACATAATGTCATTTTA
Found at i:37594765 original size:46 final size:46
Alignment explanation
Indices: 37594698--37594826 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
37594688 TGTAACCCGC
* * * *
37594698 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
37594744 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
37594790 CCATAAGTGAAATCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37594827 TGCTCAACCA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:37595157 original size:79 final size:77
Alignment explanation
Indices: 37595009--37595157 Score: 167
Period size: 79 Copynumber: 1.9 Consensus size: 77
37594999 AACCACAAAG
** * *
37595009 CATAATATTTCACGATTAAAAATCAGCATATCATATAATTAACATTAATAACTTAAAAATAATAT
1 CATAATATTTCACGATTAAAAATCAGCATATCATATAAACAACATTAATAACTTAAAAATAACAA
37595074 TTATGCTACATT
66 TTATGCTACATT
* * ** *
37595086 CATAATATTTCATGA-TAATAATCAGCATCATATCATATAAACAACATTAAATTGCTT-AAAATG
1 CATAATATTTCACGATTAAAAATCAG---CATATCATATAAACAACATT-AATAACTTAAAAATA
37595149 ACAATTATG
62 ACAATTATG
37595158 TTACTACATT
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
76 9 0.15
77 14 0.24
79 30 0.51
80 6 0.10
ACGTcount: A:0.46, C:0.13, G:0.05, T:0.35
Consensus pattern (77 bp):
CATAATATTTCACGATTAAAAATCAGCATATCATATAAACAACATTAATAACTTAAAAATAACAA
TTATGCTACATT
Found at i:37595362 original size:30 final size:30
Alignment explanation
Indices: 37595328--37595387 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
37595318 ATTTAATACG
37595328 AACTTTGGAAAAACTACACTTTTGCCCCTA
1 AACTTTGGAAAAACTACACTTTTGCCCCTA
* * * *
37595358 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAACTACACTTTTGCCCCTA
37595388 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (30 bp):
AACTTTGGAAAAACTACACTTTTGCCCCTA
Found at i:37598718 original size:20 final size:20
Alignment explanation
Indices: 37598693--37598757 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
37598683 TGTGTTAGAT
37598693 TGGTTTAGGTTTGTTTTCTG
1 TGGTTTAGGTTTGTTTTCTG
*
37598713 TGG-TT---TTTGTTTTTCAG
1 TGGTTTAGGTTTG-TTTTCTG
37598730 ATTGGTTTAGGTTTGTTTTCTG
1 --TGGTTTAGGTTTGTTTTCTG
37598752 TGGTTT
1 TGGTTT
37598758 TTGTTTTTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
16 4 0.11
17 6 0.17
19 5 0.14
20 11 0.31
22 6 0.17
23 4 0.11
ACGTcount: A:0.06, C:0.05, G:0.28, T:0.62
Consensus pattern (20 bp):
TGGTTTAGGTTTGTTTTCTG
Found at i:37598723 original size:16 final size:16
Alignment explanation
Indices: 37598702--37598764 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 16
37598692 TTGGTTTAGG
37598702 TTTGTTTTCTGTGGTT
1 TTTGTTTTCTGTGGTT
*
37598718 TTTGTTTTTCAGATTGGTTT
1 TTTG-TTTTCTG--TGG-TT
37598738 AGGTTTGTTTTCTGTGGTT
1 ---TTTGTTTTCTGTGGTT
37598757 TTTGTTTT
1 TTTGTTTT
37598765 TCTTCTTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
16 12 0.32
17 6 0.16
19 5 0.13
20 5 0.13
22 6 0.16
23 4 0.11
ACGTcount: A:0.05, C:0.05, G:0.24, T:0.67
Consensus pattern (16 bp):
TTTGTTTTCTGTGGTT
Found at i:37598733 original size:39 final size:39
Alignment explanation
Indices: 37598689--37598766 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
37598679 TGCCTGTGTT
37598689 AGATTGGTTTAGGTTTGTTTTCTGTGGTTTTTGTTTTTC
1 AGATTGGTTTAGGTTTGTTTTCTGTGGTTTTTGTTTTTC
37598728 AGATTGGTTTAGGTTTGTTTTCTGTGGTTTTTGTTTTTC
1 AGATTGGTTTAGGTTTGTTTTCTGTGGTTTTTGTTTTTC
37598767 TTCTTTTTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.08, C:0.05, G:0.26, T:0.62
Consensus pattern (39 bp):
AGATTGGTTTAGGTTTGTTTTCTGTGGTTTTTGTTTTTC
Found at i:37598767 original size:17 final size:17
Alignment explanation
Indices: 37598702--37598767 Score: 55
Period size: 17 Copynumber: 3.6 Consensus size: 17
37598692 TTGGTTTAGG
37598702 TTTG-TTTTCTGTGGTT
1 TTTGTTTTTCTGTGGTT
*
37598718 TTTGTTTTTCAGATTGGTT
1 TTTGTTTTTCTG--TGGTT
37598737 TAGGTT-TGTTTTCTGTGGTT
1 T---TTGT-TTTTCTGTGGTT
37598757 TTTGTTTTTCT
1 TTTGTTTTTCT
37598768 TCTTTTTTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 15
0.70 0.04 0.26
Matches are distributed among these distances:
16 4 0.10
17 14 0.35
18 1 0.03
19 6 0.15
20 6 0.15
21 1 0.03
22 8 0.20
ACGTcount: A:0.05, C:0.06, G:0.23, T:0.67
Consensus pattern (17 bp):
TTTGTTTTTCTGTGGTT
Found at i:37598770 original size:20 final size:20
Alignment explanation
Indices: 37598708--37598770 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
37598698 TAGGTTTGTT
37598708 TTCTGTGGTTTTTGTTTTTC
1 TTCTGTGGTTTTTGTTTTTC
*** **
37598728 AGAT-TGGTTTAGGTTTGTT-
1 TTCTGTGGTTTTTGTTT-TTC
37598747 TTCTGTGGTTTTTGTTTTTC
1 TTCTGTGGTTTTTGTTTTTC
37598767 TTCT
1 TTCT
37598771 TTTTTATATC
Statistics
Matches: 30, Mismatches: 10, Indels: 6
0.65 0.22 0.13
Matches are distributed among these distances:
19 13 0.43
20 17 0.57
ACGTcount: A:0.05, C:0.08, G:0.22, T:0.65
Consensus pattern (20 bp):
TTCTGTGGTTTTTGTTTTTC
Found at i:37604343 original size:40 final size:40
Alignment explanation
Indices: 37604288--37604366 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
37604278 TTTGACTAGA
37604288 AATAAAATAAAATAAGGAGAAAAAGATATCAACTCTCATT
1 AATAAAATAAAATAAGGAGAAAAAGATATCAACTCTCATT
37604328 AATAAAATAAAATAAGGAGAAAAAGATATCAACTCTCAT
1 AATAAAATAAAATAAGGAGAAAAAGATATCAACTCTCAT
37604367 CTTCCTCCTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.22
Consensus pattern (40 bp):
AATAAAATAAAATAAGGAGAAAAAGATATCAACTCTCATT
Found at i:37604818 original size:48 final size:48
Alignment explanation
Indices: 37604708--37604879 Score: 174
Period size: 48 Copynumber: 3.6 Consensus size: 48
37604698 TGATATATGT
* * *
37604708 GCTAGTGTAAAACCATGTCTGGGACATGGCATCGACCACAT-T--TGAGA
1 GCTAGTGTAAGACCATGTCTGGAACATGGCATCG-GCA-ATGTAATGAGA
* * *
37604755 GCTAGTATAAGACCATGTTTGGAACATGGCATCGGCAATGTAATAAGA
1 GCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGTAATGAGA
* * *
37604803 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCG-ACATGTGA
1 GCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCAAT-GTA-ATGAGA
* *
37604851 GCCAGTGTAAGACCATGTTTGGAACATGG
1 GCTAGTGTAAGACCATGTCTGGAACATGG
37604880 TATCAACAAT
Statistics
Matches: 105, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
45 2 0.02
46 3 0.03
47 32 0.30
48 68 0.65
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGTAATGAGA
Found at i:37605340 original size:24 final size:24
Alignment explanation
Indices: 37605304--37605351 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
37605294 GGGATTAAAG
*
37605304 GACGTCGGGGGCATCGATCACACT
1 GACGTCGGAGGCATCGATCACACT
37605328 GACGTCGGAGGCATCGATCACACT
1 GACGTCGGAGGCATCGATCACACT
37605352 ATCACCTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.23, C:0.29, G:0.31, T:0.17
Consensus pattern (24 bp):
GACGTCGGAGGCATCGATCACACT
Found at i:37609832 original size:42 final size:42
Alignment explanation
Indices: 37609782--37609920 Score: 161
Period size: 42 Copynumber: 3.3 Consensus size: 42
37609772 GTATGATTTA
37609782 TCATGTAAGACCATATCTGGGATATGGCGTTGATATGAGATT
1 TCATGTAAGACCATATCTGGGATATGGCGTTGATATGAGATT
** * * * *
37609824 TCATGTAAGACCACGTCTGGGACATGGCGTTGAAACGAGAAT
1 TCATGTAAGACCATATCTGGGATATGGCGTTGATATGAGATT
* * * * * *
37609866 TCGTATAAGACCATATCTGAGATATGGCATCGATATGAGATC
1 TCATGTAAGACCATATCTGGGATATGGCGTTGATATGAGATT
*
37609908 CCATGTAAGACCA
1 TCATGTAAGACCA
37609921 CCATGGGGTT
Statistics
Matches: 76, Mismatches: 21, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
42 76 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (42 bp):
TCATGTAAGACCATATCTGGGATATGGCGTTGATATGAGATT
Found at i:37616140 original size:15 final size:15
Alignment explanation
Indices: 37616120--37616152 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
37616110 TAATTCGAAT
*
37616120 ATACAATTGGTGTAA
1 ATACAATTGATGTAA
37616135 ATACAATTGATGTAA
1 ATACAATTGATGTAA
37616150 ATA
1 ATA
37616153 TCGAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.33
Consensus pattern (15 bp):
ATACAATTGATGTAA
Found at i:37618098 original size:20 final size:21
Alignment explanation
Indices: 37618060--37618103 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
37618050 TTTTATTTTT
*
37618060 AATTCTTTTTTTAATTAAT-A
1 AATTCTTTATTTAATTAATGA
37618080 AATTCTTTATTT-ATATAATGA
1 AATTCTTTATTTAAT-TAATGA
37618101 AAT
1 AAT
37618104 AATAAGTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 2 0.10
20 15 0.71
21 4 0.19
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (21 bp):
AATTCTTTATTTAATTAATGA
Found at i:37619451 original size:20 final size:20
Alignment explanation
Indices: 37619401--37619481 Score: 75
Period size: 18 Copynumber: 4.3 Consensus size: 20
37619391 TTCACTCTTT
*
37619401 CACTCACAATGCTTTTA-T-
1 CACTCACATTGCTTTTATTC
*
37619419 CACTAACCA-TGCTTTTATTC
1 CACTCA-CATTGCTTTTATTC
* *
37619439 CACTCACTTTGCTTTTA-AC
1 CACTCACATTGCTTTTATTC
37619458 C-CTCACATTGCTTTTATT-
1 CACTCACATTGCTTTTATTC
37619476 CACTCA
1 CACTCA
37619482 ATTTTTGTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
18 28 0.55
19 10 0.20
20 13 0.25
ACGTcount: A:0.23, C:0.31, G:0.05, T:0.41
Consensus pattern (20 bp):
CACTCACATTGCTTTTATTC
Found at i:37619452 original size:38 final size:37
Alignment explanation
Indices: 37619399--37619481 Score: 96
Period size: 38 Copynumber: 2.2 Consensus size: 37
37619389 TTTTCACTCT
*
37619399 TTCACTCACAATGCTTTTATCACTAACCA-TGCTTTTA
1 TTCACTCACAATGCTTTTAACACTAA-CATTGCTTTTA
** * *
37619436 TTCCACTCACTTTGCTTTTAACCCTCACATTGCTTTTA
1 TT-CACTCACAATGCTTTTAACACTAACATTGCTTTTA
37619474 TTCACTCA
1 TTCACTCA
37619482 ATTTTTGTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
37 10 0.26
38 29 0.74
ACGTcount: A:0.23, C:0.30, G:0.05, T:0.42
Consensus pattern (37 bp):
TTCACTCACAATGCTTTTAACACTAACATTGCTTTTA
Found at i:37621594 original size:27 final size:27
Alignment explanation
Indices: 37621548--37621658 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
37621538 TTAGTCATGG
* *
37621548 TGGACTTCCT-GTGTTGAATGTCCCGA
1 TGGACTACCTCGTGTTTAATGTCCCGA
*
37621574 TGGACTACCTCGTGTTTAATGTCCTGA
1 TGGACTACCTCGTGTTTAATGTCCCGA
* *
37621601 TAGACTACCTTC-TGTTTAATGTCCCAA
1 TGGACTACC-TCGTGTTTAATGTCCCGA
* *
37621628 TTGACTACCTTGTGTTTAATGTCCCGA
1 TGGACTACCTCGTGTTTAATGTCCCGA
37621655 TGGA
1 TGGA
37621659 ATCTTTATGT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 10 0.14
27 60 0.83
28 2 0.03
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
TGGACTACCTCGTGTTTAATGTCCCGA
Found at i:37625615 original size:49 final size:49
Alignment explanation
Indices: 37625543--37625925 Score: 593
Period size: 49 Copynumber: 8.0 Consensus size: 49
37625533 CTTCGGGACT
* * * * *
37625543 TATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
37625590 TGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
37625639 TATCAC--ATATATACACTTTCACATTCATCACATCGACCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
37625686 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
37625735 TATCAC--ATATATACACTTTCACATTCATCACATCGACCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
37625782 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
37625831 TATCAC--ATATATACACTTTCACATTCATCACATCGACCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
37625878 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
37625926 TTACTATCAT
Statistics
Matches: 307, Mismatches: 21, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
47 141 0.46
48 1 0.00
49 165 0.54
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:37625705 original size:96 final size:96
Alignment explanation
Indices: 37625541--37625928 Score: 695
Period size: 96 Copynumber: 4.0 Consensus size: 96
37625531 CCCTTCGGGA
* * * * * * * *
37625541 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCCTATCACATATATATAC
*
37625606 ACTTCCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
37625637 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCCTATCACATATATATAC
37625702 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
37625733 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCCTATCACATATATATAC
37625798 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
37625829 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCCTATCACATATATATAC
37625894 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
37625925 CTTA
1 CTTA
37625929 CTATCATTTC
Statistics
Matches: 283, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 283 1.00
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCCTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37639633 original size:12 final size:12
Alignment explanation
Indices: 37639605--37639635 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
37639595 AAATCTGCTA
*
37639605 AAAAATAAAAAT
1 AAAAGTAAAAAT
37639617 AAAAGTAAAAAT
1 AAAAGTAAAAAT
37639629 AAAAGTA
1 AAAAGTA
37639636 GTTTTAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.16
Consensus pattern (12 bp):
AAAAGTAAAAAT
Found at i:37641090 original size:55 final size:55
Alignment explanation
Indices: 37641018--37641124 Score: 144
Period size: 55 Copynumber: 1.9 Consensus size: 55
37641008 CGCTTCTCCC
* * * *
37641018 ACGCCCGTGTTAATTTAACAGGTTCGAC-CACGGGTGTTCCACACGGGTGTGTCGA
1 ACGCCCGTGCTAATTTAACAGGTTCG-CTCACAGGTCTTCCACACGGGCGTGTCGA
* *
37641073 ACGCCCGTGCTATTTTAACAGGTTCGCTCACAGTTCTTCCACACGGGCGTGT
1 ACGCCCGTGCTAATTTAACAGGTTCGCTCACAGGTCTTCCACACGGGCGTGT
37641125 TACACGCCTG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.19, C:0.28, G:0.26, T:0.27
Consensus pattern (55 bp):
ACGCCCGTGCTAATTTAACAGGTTCGCTCACAGGTCTTCCACACGGGCGTGTCGA
Found at i:37641132 original size:55 final size:56
Alignment explanation
Indices: 37641017--37641159 Score: 139
Period size: 55 Copynumber: 2.6 Consensus size: 56
37641007 TCGCTTCTCC
* * * *
37641017 CACGCCCGTGTTAATTTAACAGGTTCGACCACGGGTGTTCCACACGGGTGTGTCGA
1 CACGCCCGTGCTAATTTAACAGGTTCGACCACAGGTCTTCCACACGGGCGTGTCGA
* * *
37641073 -ACGCCCGTGCTATTTTAACAGGTTCG-CTCACAGTTCTTCCACACGGGCGTGT-TA
1 CACGCCCGTGCTAATTTAACAGGTTCGAC-CACAGGTCTTCCACACGGGCGTGTCGA
* * ** * *
37641127 CACGCCTGTGTTGTTTTAGCAGGCTCGACCACA
1 CACGCCCGTGCTAATTTAACAGGTTCGACCACA
37641160 TCCATATTGC
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
54 2 0.03
55 69 0.96
56 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.25, T:0.27
Consensus pattern (56 bp):
CACGCCCGTGCTAATTTAACAGGTTCGACCACAGGTCTTCCACACGGGCGTGTCGA
Found at i:37641468 original size:43 final size:43
Alignment explanation
Indices: 37641407--37641488 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
37641397 TTCAGTGAAC
* *
37641407 GGTCATGGTGGTTTGAGGAGTTTATACTCCTCATTCCTGGAAT
1 GGTCAAGGTGGTTTGAGGAGTTCATACTCCTCATTCCTGGAAT
* *
37641450 GGTCAAGGTGGTTTGAGGAGTTCGTACTCCTTATTCCTG
1 GGTCAAGGTGGTTTGAGGAGTTCATACTCCTCATTCCTG
37641489 CTAACAATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.17, C:0.17, G:0.29, T:0.37
Consensus pattern (43 bp):
GGTCAAGGTGGTTTGAGGAGTTCATACTCCTCATTCCTGGAAT
Found at i:37642160 original size:23 final size:21
Alignment explanation
Indices: 37642105--37642148 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
37642095 TCAATTTTAA
37642105 CTAGCACATCTTCAATAATAC
1 CTAGCACATCTTCAATAATAC
37642126 CTAGCACATCTTCAATAATAC
1 CTAGCACATCTTCAATAATAC
37642147 CT
1 CT
37642149 CTAGGGAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.30, G:0.05, T:0.30
Consensus pattern (21 bp):
CTAGCACATCTTCAATAATAC
Found at i:37650569 original size:30 final size:29
Alignment explanation
Indices: 37650526--37650582 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
37650516 AAAGATAACA
37650526 AGAAAACCGAATAAAGAAATCAAAGATTG
1 AGAAAACCGAATAAAGAAATCAAAGATTG
* *
37650555 AGAAACCCAGAATAAAGAAATCCAAGAT
1 AGAAAACC-GAATAAAGAAATCAAAGAT
37650583 ACGATACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.58, C:0.14, G:0.16, T:0.12
Consensus pattern (29 bp):
AGAAAACCGAATAAAGAAATCAAAGATTG
Found at i:37653670 original size:93 final size:93
Alignment explanation
Indices: 37653563--37653828 Score: 455
Period size: 93 Copynumber: 2.9 Consensus size: 93
37653553 CGCCCATAAG
* * ***
37653563 CGAACTCGGACTCAACTC-ACTAAGCTCGGGTTTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAAC-GAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTC
37653627 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
37653656 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
37653721 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
37653749 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
37653814 ACGAG-TGCGGATGCC
66 ACGAGCT-CGGATGCC
37653829 CAAATTTCTG
Statistics
Matches: 166, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
92 1 0.01
93 163 0.98
94 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:37653673 original size:47 final size:47
Alignment explanation
Indices: 37653610--37653778 Score: 222
Period size: 47 Copynumber: 3.6 Consensus size: 47
37653600 ATCCATAAGT
37653610 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * * *
37653657 GAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
37653703 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
*
37653750 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
37653779 CGTTCGCATC
Statistics
Matches: 104, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 28 0.27
47 56 0.54
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:37653819 original size:46 final size:46
Alignment explanation
Indices: 37653556--37653818 Score: 247
Period size: 46 Copynumber: 5.7 Consensus size: 46
37653546 TGTAACCCGC
* ***
37653556 CCATAAGCGAACTCGGACTCAACTC-ACTAAGCTCGGGTTTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAAC-GAGCTCGGACGTTCGCAT
* *
37653602 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C--GTTCGCAT
* *
37653652 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
37653695 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C--GTTCGCAT
* *
37653745 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
*
37653788 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
37653819 TGCGGATGCC
Statistics
Matches: 178, Mismatches: 20, Indels: 38
0.75 0.08 0.16
Matches are distributed among these distances:
42 6 0.03
43 6 0.03
44 4 0.02
45 4 0.02
46 82 0.46
47 58 0.33
48 4 0.02
49 3 0.02
50 6 0.03
51 5 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:37656860 original size:49 final size:49
Alignment explanation
Indices: 37656656--37656964 Score: 173
Period size: 49 Copynumber: 6.5 Consensus size: 49
37656646 CATGAGTGCC
* * * * * *
37656656 AGTGTAAGACATGTCTGGGACAT-GCATTGACATTG--AGACGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCT
* * * * *
37656702 AGTGTAAGACATGTTTGGGACAT-GCATCGGCCTC-AGGACAT-ACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGA-TAGATGA-AAGCT
* * * * * * *
37656750 AGTGTAAAACCTGTCTGGGACATGACGTC-AGCTTG-TTG-TG--TG-T
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCT
* *
37656793 CAGTGTAAGACCTATCTGGGACATGGCATCGACACT-GATAGATGAGAGCT
1 -AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCT
* * *
37656843 AGTGTAAGATCTGTCTGGGACATGGCATC-ATCCTCGATATATGAAAGTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTCGATAGATGAAAGCT
* * * * * ** *
37656892 TGTGTAAGACCTGTCTGGGACACGGCTTCGACTTCAAT-G-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCT
37656939 AGTGTAAGACCATGTCTGGGACATGG
1 AGTGTAAGACC-TGTCTGGGACATGG
37656965 TGTCAGCATT
Statistics
Matches: 199, Mismatches: 45, Indels: 36
0.71 0.16 0.13
Matches are distributed among these distances:
43 1 0.01
44 26 0.13
45 2 0.01
46 34 0.17
47 17 0.09
48 44 0.22
49 73 0.37
50 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCT
Found at i:37657462 original size:100 final size:100
Alignment explanation
Indices: 37657307--37657506 Score: 400
Period size: 100 Copynumber: 2.0 Consensus size: 100
37657297 ATAGTGCAGC
37657307 CAAAGTAGCTCGAGGATTATCGCCTATGTGGGAGAAACCAGTCACACAATCATCTGAAGCACTTG
1 CAAAGTAGCTCGAGGATTATCGCCTATGTGGGAGAAACCAGTCACACAATCATCTGAAGCACTTG
37657372 GTATAGTTAGTTCTTTTATTTTGATTATGGCATGT
66 GTATAGTTAGTTCTTTTATTTTGATTATGGCATGT
37657407 CAAAGTAGCTCGAGGATTATCGCCTATGTGGGAGAAACCAGTCACACAATCATCTGAAGCACTTG
1 CAAAGTAGCTCGAGGATTATCGCCTATGTGGGAGAAACCAGTCACACAATCATCTGAAGCACTTG
37657472 GTATAGTTAGTTCTTTTATTTTGATTATGGCATGT
66 GTATAGTTAGTTCTTTTATTTTGATTATGGCATGT
37657507 ATAGGAACTT
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 100 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (100 bp):
CAAAGTAGCTCGAGGATTATCGCCTATGTGGGAGAAACCAGTCACACAATCATCTGAAGCACTTG
GTATAGTTAGTTCTTTTATTTTGATTATGGCATGT
Found at i:37658925 original size:34 final size:34
Alignment explanation
Indices: 37658882--37658967 Score: 104
Period size: 34 Copynumber: 2.6 Consensus size: 34
37658872 CGAATCAGTA
* *
37658882 ACAGT-TCAGTTTCAGT-TAGGGCCTTAGCCCATT
1 ACAGTATCAGTATCAGTAT-GGGCCGTAGCCCATT
37658915 ACAGTATCAGTATCAGTATGGGCCGTAGCCCATT
1 ACAGTATCAGTATCAGTATGGGCCGTAGCCCATT
* * *
37658949 TCAGTAACAGTAGCAGTAT
1 ACAGTATCAGTATCAGTAT
37658968 AGATATGCAA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
33 5 0.11
34 40 0.87
35 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (34 bp):
ACAGTATCAGTATCAGTATGGGCCGTAGCCCATT
Found at i:37659367 original size:34 final size:34
Alignment explanation
Indices: 37659307--37659374 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
37659297 GTTTCAGTTA
* * * *
37659307 GGGCCGTAGCCTATTATAGTATCAGTATCAGTAT
1 GGGCCGTAGCCCATTATAATAACAGTAGCAGTAT
37659341 GGGCCGTAGCCCATT-TCAATAACAGTAGCAGTAT
1 GGGCCGTAGCCCATTAT-AATAACAGTAGCAGTAT
37659375 AGATATGGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 1 0.03
34 28 0.97
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (34 bp):
GGGCCGTAGCCCATTATAATAACAGTAGCAGTAT
Found at i:37659443 original size:407 final size:408
Alignment explanation
Indices: 37658678--37659483 Score: 1213
Period size: 407 Copynumber: 2.0 Consensus size: 408
37658668 GCCTTATTAC
37658678 TAAATGAAAAGGCAAATATGGAAGCATGCACAGTTATGAGGCCACCTTCGAGTCCCTCGCAGCAC
1 TAAATGAAAAGGCAAATATGGAAGCATGCACAGTTATGAGGCCACCTTCGAGTCCCTCGCAGCAC
** * * * *
37658743 TGACTTGCCTAAGCCCGGTGATTACCTGTACAGATGAATAGAACGGTGGGTTTATGAAAACTCAG
66 CAACTCGCCTAAGCCCGGGGATTACCTGTACAGATAAATAGAACGGTGAGTTTATGAAAACTCAG
* * * * * *
37658808 TGTGTAATCCCTTAATAACATACAGTGAATCATACAGTAGGCATCTACAGTCTGGGCCTGAGCTC
131 TGTGTAATCCCTTAATAACATACAGTCAATCATACAATAGGCAACCACAGTCTGAGCCTGAGCCC
* * *
37658873 GAATCAGTAACAGTTCAGTTTCAGTTAGGGCCTTAGCCCATTACAGTATCAGTATCAGTATGGGC
196 GAATAAGTAACACTTCAGTTTCAGTTAGGGCCGTAGCCCATTACAGTATCAGTATCAGTATGGGC
* * * *
37658938 CGTAGCCCATTTCAGTAACAGTAGCAGTATAGATATGCAATCAGAAATCCGACCTAACTAGCCTC
261 CGTAGCCCATTTCAATAACAGTAGCAGTATAGATATGCAATCAGAAATCCCACCCAACCAGCCTC
*
37659003 TACACTCCACTCCGTCCAGCCCTACACTCCATGTGGGGATAAAATCAACCTACCCATCCCTACAC
326 TACACTCCACTCCGTCCAGCCCTACACTCCATGTGGGGATAAAATCAACCCACCCATCCCTACAC
37659068 TCCAAATTAAATTTCTTG
391 TCCAAATTAAATTTCTTG
* * * * * * *
37659086 TAAATGAAAAGGCAAATATGGAAGCATGTACGGTTCTGTGGCGACCTTTGAGTCTCTCGCAGCAC
1 TAAATGAAAAGGCAAATATGGAAGCATGCACAGTTATGAGGCCACCTTCGAGTCCCTCGCAGCAC
* * *
37659151 CAA-TCCGCCTAAGCCTGGGGATTA-CTGGTACAGATAAATAGCAGGGTGAGTTTATGAAAACTC
66 CAACT-CGCCTAAGCCCGGGGATTACCT-GTACAGATAAATAGAACGGTGAGTTTATGAAAACTC
* *
37659214 AGTGTGTAATCCCTTAA-AACATACAGTCAATCATACAATAGGCAACCACAGTCTGAGCTTGGGC
129 AGTGTGTAATCCCTTAATAACATACAGTCAATCATACAATAGGCAACCACAGTCTGAGCCTGAGC
* * *
37659278 CCGAATAAGTAACACTTTAGTTTCAGTTAGGGCCGTAGCCTATTATAGTATCAGTATCAGTATGG
194 CCGAATAAGTAACACTTCAGTTTCAGTTAGGGCCGTAGCCCATTACAGTATCAGTATCAGTATGG
*
37659343 GCCGTAGCCCATTTCAATAACAGTAGCAGTATAGATATGGAATCAGAAATCCCACCCAACCAGCC
259 GCCGTAGCCCATTTCAATAACAGTAGCAGTATAGATATGCAATCAGAAATCCCACCCAACCAGCC
* * * *
37659408 TCTACACTCCACTCCGTCCAGCCCTATATTCCATGTGGGGGTAAAATCAACCCATCCATCCCTAC
324 TCTACACTCCACTCCGTCCAGCCCTACACTCCATGTGGGGATAAAATCAACCCACCCATCCCTAC
37659473 ACTCCAAATTA
389 ACTCCAAATTA
37659484 GCACCGGTTG
Statistics
Matches: 356, Mismatches: 40, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
407 232 0.65
408 124 0.35
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (408 bp):
TAAATGAAAAGGCAAATATGGAAGCATGCACAGTTATGAGGCCACCTTCGAGTCCCTCGCAGCAC
CAACTCGCCTAAGCCCGGGGATTACCTGTACAGATAAATAGAACGGTGAGTTTATGAAAACTCAG
TGTGTAATCCCTTAATAACATACAGTCAATCATACAATAGGCAACCACAGTCTGAGCCTGAGCCC
GAATAAGTAACACTTCAGTTTCAGTTAGGGCCGTAGCCCATTACAGTATCAGTATCAGTATGGGC
CGTAGCCCATTTCAATAACAGTAGCAGTATAGATATGCAATCAGAAATCCCACCCAACCAGCCTC
TACACTCCACTCCGTCCAGCCCTACACTCCATGTGGGGATAAAATCAACCCACCCATCCCTACAC
TCCAAATTAAATTTCTTG
Found at i:37668372 original size:31 final size:31
Alignment explanation
Indices: 37668331--37668394 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
37668321 CCTTTTCATA
* *
37668331 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCT
**
37668362 TTTCAAATTTCATATTACTAGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCT
37668393 TT
1 TT
37668395 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTAGGCCGAAGCCT
Found at i:37668401 original size:251 final size:250
Alignment explanation
Indices: 37667944--37668443 Score: 912
Period size: 251 Copynumber: 2.0 Consensus size: 250
37667934 GGCTCACCTA
37667944 CAAGGTTAAGGAAAGGGGGTGAGTTTGGAAACTCAGTGTGCAACAAGCCCCTTCCAGAGCCCAGA
1 CAAGGTTAAGGAAAGGGGGTGAGTTTGGAAACTCAGTGTGCAACAAGCCCCTTCCAGAGCCCAGA
*
37668009 ACAATAAAAGCCTGTTGGGCCTAAGCCCAAATCCAATCTCAAACATGTACTGGGCCATAGCCCTT
66 ACAATAAAAGCCTGTTGGGCCTAAGCCCAAATCCAATCTCAAACATGTACTAGGCCATAGCCCTT
* *
37668074 TTCATATTTCATATTTCATAACACTGGGCCGAAGCCATTTTAAATTTCATATTACTGGGTCGAAG
131 TTCATATTTCATATTTCATAACACTGGGCCGAAGCCATTTTAAATTTCATATTACTAGGCCGAAG
*
37668139 CCTTTACTGTAAACGGTATGGCCCATAGGCCCATTTCAATATCACATGTAATGTG
196 CCTTTACTGTAAACGGTATCGCCCATAGGCCCATTTCAATATCACATGTAATGTG
*
37668194 CAAGGTTAAGGAAAGGGGGGTGAGTTTGGAAACTCAGTGTGCAACAAGCCCCTTCTAGAGCCCAG
1 CAAGGTTAAGGAAA-GGGGGTGAGTTTGGAAACTCAGTGTGCAACAAGCCCCTTCCAGAGCCCAG
* *
37668259 AGCAATAACAGCCTGTTGGGCCTAAGCCCAAATCCAATCTCAAACATGTACTAGGCCATAGCCCT
65 AACAATAAAAGCCTGTTGGGCCTAAGCCCAAATCCAATCTCAAACATGTACTAGGCCATAGCCCT
37668324 TTTCATATTTCATATTTCATAACACTGGGCCGAAGCC-TTTTCAAATTTCATATTACTAGGCCGA
130 TTTCATATTTCATATTTCATAACACTGGGCCGAAGCCATTTT-AAATTTCATATTACTAGGCCGA
37668388 AGCCTTTACTGTAAACGGTATCGCCCATAGGCCCATTTCAATATCACATGTAATGT
194 AGCCTTTACTGTAAACGGTATCGCCCATAGGCCCATTTCAATATCACATGTAATGT
37668444 CAAATGAAAG
Statistics
Matches: 241, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
250 18 0.07
251 223 0.93
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (250 bp):
CAAGGTTAAGGAAAGGGGGTGAGTTTGGAAACTCAGTGTGCAACAAGCCCCTTCCAGAGCCCAGA
ACAATAAAAGCCTGTTGGGCCTAAGCCCAAATCCAATCTCAAACATGTACTAGGCCATAGCCCTT
TTCATATTTCATATTTCATAACACTGGGCCGAAGCCATTTTAAATTTCATATTACTAGGCCGAAG
CCTTTACTGTAAACGGTATCGCCCATAGGCCCATTTCAATATCACATGTAATGTG
Found at i:37668718 original size:23 final size:23
Alignment explanation
Indices: 37668610--37669514 Score: 1591
Period size: 23 Copynumber: 39.1 Consensus size: 23
37668600 CCTAGCCTCT
* *
37668610 TTTAATAACTAGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
37668633 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
37668657 TTCATCATAACTGGGGCATAAGCCC
1 TT--TAATAACTGGGGCATAAGCCC
*
37668682 TTTATCATAACTGGGGTATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
*
37668707 TTTAATAACTGGGGCATAAGCGC
1 TTTAATAACTGGGGCATAAGCCC
37668730 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* **** * *
37668753 TTT--TGCACTTCCTCCATCCA-TCC
1 TTTAAT-AAC-TGGGGCAT-AAGCCC
37668776 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37668799 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37668822 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37668845 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37668868 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37668891 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37668914 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37668937 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37668960 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37668983 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669006 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669029 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669052 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669075 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669098 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669121 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669144 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669167 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669190 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669213 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669236 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669259 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669282 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669305 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669328 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669351 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669374 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669397 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669420 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669443 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669466 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
37669489 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
37669512 TTT
1 TTT
37669515 TGCACTTCCT
Statistics
Matches: 847, Mismatches: 24, Indels: 21
0.95 0.03 0.02
Matches are distributed among these distances:
21 1 0.00
22 3 0.00
23 775 0.91
24 23 0.03
25 45 0.05
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:37669589 original size:20 final size:20
Alignment explanation
Indices: 37669561--37669611 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
37669551 GCATTTATGA
* *
37669561 ACATCTCATGTGTATATCAT
1 ACATATCATGTGCATATCAT
37669581 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
37669601 ACATGTCATGT
1 ACATATCATGT
37669612 TTATCAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:37669689 original size:24 final size:24
Alignment explanation
Indices: 37669648--37669694 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
37669638 ATATATAAAC
* * *
37669648 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAAAGGTCATTTTA
37669672 CCTAGGGGCAAAAAGGTCATTTT
1 CCTAGGGGCAAAAAGGTCATTTT
37669695 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAAAGGTCATTTTA
Found at i:37669786 original size:25 final size:24
Alignment explanation
Indices: 37669745--37669905 Score: 218
Period size: 24 Copynumber: 6.7 Consensus size: 24
37669735 GGTTTCCATG
* *
37669745 GGGGCAAAAGCCCTTTTTATAACT
1 GGGGCATAAGCCCTTTTAATAACT
*
37669769 GGGGCATAAGCCCTTTTTATAACT
1 GGGGCATAAGCCCTTTTAATAACT
* *
37669793 GGGGCATAAGCCCTTCATCATAACT
1 GGGGCATAAGCCCTT-TTAATAACT
* *
37669818 GGGGCATAAGCACTTTATCATAACT
1 GGGGCATAAGCCCTTT-TAATAACT
37669843 GGGGCATAAGCCC-TTTAATAACT
1 GGGGCATAAGCCCTTTTAATAACT
37669866 GGGGCATAAGCCC-TTTAATAACT
1 GGGGCATAAGCCCTTTTAATAACT
*
37669889 AGGGCATAAGCCCTTTT
1 GGGGCATAAGCCCTTTT
37669906 GCACTTCCTC
Statistics
Matches: 126, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
23 42 0.33
24 43 0.34
25 41 0.33
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
GGGGCATAAGCCCTTTTAATAACT
Found at i:37669867 original size:23 final size:23
Alignment explanation
Indices: 37669745--37669904 Score: 212
Period size: 23 Copynumber: 6.7 Consensus size: 23
37669735 GGTTTCCATG
* *
37669745 GGGGCAAAAGCCCTTTTTATAACT
1 GGGGCATAAGCCC-TTTAATAACT
*
37669769 GGGGCATAAGCCCTTTTTATAACT
1 GGGGCATAAGCCC-TTTAATAACT
*
37669793 GGGGCATAAGCCCTTCATCATAACT
1 GGGGCATAAGCCCTT--TAATAACT
*
37669818 GGGGCATAAGCACTTTATCATAACT
1 GGGGCATAAGCCCTTTA--ATAACT
37669843 GGGGCATAAGCCCTTTAATAACT
1 GGGGCATAAGCCCTTTAATAACT
37669866 GGGGCATAAGCCCTTTAATAACT
1 GGGGCATAAGCCCTTTAATAACT
*
37669889 AGGGCATAAGCCCTTT
1 GGGGCATAAGCCCTTT
37669905 TGCACTTCCT
Statistics
Matches: 126, Mismatches: 6, Indels: 9
0.89 0.04 0.06
Matches are distributed among these distances:
23 47 0.37
24 36 0.29
25 43 0.34
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (23 bp):
GGGGCATAAGCCCTTTAATAACT
Found at i:37669979 original size:20 final size:20
Alignment explanation
Indices: 37669951--37670001 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
37669941 GCATTTATGA
* *
37669951 ACATCTCATGTGTATATCAT
1 ACATATCATGTGCATATCAT
37669971 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
37669991 ACATGTCATGT
1 ACATATCATGT
37670002 TTATCAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:37671390 original size:27 final size:27
Alignment explanation
Indices: 37671360--37671467 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
37671350 GTAAATCTAC
*
37671360 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
37671387 AAACCAATGGTATTTTTA-TAATTTT-T
1 AAACCAAGGGTA-TTTTAGTAATTTTGT
* *
37671413 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTTAGTAATTTTGT
** * *
37671443 AAATTAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTTAGTAATTTT
37671468 ACAAATTGAG
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
26 1 0.01
27 37 0.55
28 14 0.21
29 14 0.21
30 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:37671473 original size:27 final size:27
Alignment explanation
Indices: 37671423--37671546 Score: 133
Period size: 27 Copynumber: 4.6 Consensus size: 27
37671413 AGAAAGTCAA
* ** *
37671423 GGGTATTTTTGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
37671450 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
37671476 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* *
37671504 TGGTATTTTGGTAATTTTAGAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
37671531 GGGTATTTTGATAATT
1 GGGTATTTTGGTAATT
37671547 CTATCTTATA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.03
27 77 0.96
28 1 0.01
ACGTcount: A:0.28, C:0.06, G:0.23, T:0.44
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:37671540 original size:81 final size:81
Alignment explanation
Indices: 37671424--37671579 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 81
37671414 GAAAGTCAAG
* * * * * *
37671424 GGTATTTTTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTA-CAAATTGAGGGTATTTCGG
1 GGTATTTTGGTAATTTTGTAAACTAGGGGTATTTTGATAATTCTATCAAATAG-GGGTATTTCAG
37671488 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
**
37671505 GGTATTTTGGTAATTTTAG-AAACTAGGGGTATTTTGATAATTCTATCTTATAGGGGTATTTCAG
1 GGTATTTTGGTAATTTT-GTAAACTAGGGGTATTTTGATAATTCTATCAAATAGGGGTATTTCAG
37671569 TAATTTCACAA
65 TAATTTCACAA
37671580 TCGAGGGTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
81 60 0.92
82 5 0.08
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.43
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTGTAAACTAGGGGTATTTTGATAATTCTATCAAATAGGGGTATTTCAGT
AATTTCACAAACCAGT
Found at i:37671609 original size:81 final size:81
Alignment explanation
Indices: 37671433--37671601 Score: 189
Period size: 81 Copynumber: 2.1 Consensus size: 81
37671423 GGGTATTTTT
* * * * * *
37671433 GTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACA
1 GTAATTTTATAAACTAGGGGTATTTTGATAATTCTACAAATAGAGGGTATTTCAGTAATTTCACA
***
37671498 AACCAGTGGTATTTTG
66 AACCAGTGGTAAAATG
* **
37671514 GTAATTTTAGAAACTAGGGGTATTTTGATAATTCTATCTTATAG-GGGTATTTCAGTAATTTCAC
1 GTAATTTTATAAACTAGGGGTATTTTGATAATTCTA-CAAATAGAGGGTATTTCAGTAATTTCAC
* *
37671578 AATCGAG-GGTAAAATG
65 AAACCAGTGGTAAAATG
37671594 GTAATTTT
1 GTAATTTT
37671602 TTTAAACTGA
Statistics
Matches: 73, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
80 14 0.19
81 55 0.75
82 4 0.05
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
GTAATTTTATAAACTAGGGGTATTTTGATAATTCTACAAATAGAGGGTATTTCAGTAATTTCACA
AACCAGTGGTAAAATG
Found at i:37671640 original size:27 final size:27
Alignment explanation
Indices: 37671578--37671776 Score: 238
Period size: 27 Copynumber: 7.3 Consensus size: 27
37671568 GTAATTTCAC
*
37671578 AATCGAGGGTAAAATGGTAATTTTTTTA
1 AATCGAGGGTAAAATGGTAA-TTTTATA
*
37671606 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTATA
** * *
37671633 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
* *
37671660 AATCGAGGGTAAAATGTTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
* *
37671687 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
* * *
37671714 AATCGATGGTGAAACGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
* *
37671741 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTTTATA
37671768 AATCGAGGG
1 AATCGAGGG
37671777 CATTTTAATA
Statistics
Matches: 147, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
27 128 0.87
28 19 0.13
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTATA
Found at i:37676551 original size:16 final size:16
Alignment explanation
Indices: 37676530--37676580 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
37676520 ATGTATCAAC
*
37676530 AAAAGCTGAAATGCCG
1 AAAAGCTGAAAAGCCG
*
37676546 AAAAGCCGAAAAGCC-
1 AAAAGCTGAAAAGCCG
37676561 AAAATGCTGAAAAGCCG
1 AAAA-GCTGAAAAGCCG
37676578 AAA
1 AAA
37676581 GTTTAGCTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
15 4 0.13
16 23 0.77
17 3 0.10
ACGTcount: A:0.51, C:0.20, G:0.22, T:0.08
Consensus pattern (16 bp):
AAAAGCTGAAAAGCCG
Found at i:37676553 original size:8 final size:8
Alignment explanation
Indices: 37676530--37676580 Score: 59
Period size: 8 Copynumber: 6.4 Consensus size: 8
37676520 ATGTATCAAC
*
37676530 AAAAGCTG
1 AAAAGCCG
*
37676538 AAATGCCG
1 AAAAGCCG
37676546 AAAAGCCG
1 AAAAGCCG
37676554 AAAAGCC-
1 AAAAGCCG
*
37676561 AAAATGCTG
1 AAAA-GCCG
37676570 AAAAGCCG
1 AAAAGCCG
37676578 AAA
1 AAA
37676581 GTTTAGCTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
7 4 0.11
8 28 0.78
9 4 0.11
ACGTcount: A:0.51, C:0.20, G:0.22, T:0.08
Consensus pattern (8 bp):
AAAAGCCG
Found at i:37676847 original size:29 final size:28
Alignment explanation
Indices: 37676792--37676906 Score: 142
Period size: 29 Copynumber: 4.0 Consensus size: 28
37676782 GTGAGCATGA
* * *
37676792 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
37676820 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
37676849 ATATACAA-GTGATTTGGGCCTAATGGGCC
1 ATATA-AATGTGA-TTGGGCCTAATGGGCC
* * *
37676878 ATATAAATATGAATGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
37676906 A
1 A
37676907 GATACAGGTA
Statistics
Matches: 78, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
28 28 0.36
29 48 0.62
30 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:37677946 original size:20 final size:19
Alignment explanation
Indices: 37677914--37677956 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
37677904 TTTCGTAACT
**
37677914 TTTTTTTAGTTAATTAGGG
1 TTTTTTTAGTTAAGAAGGG
*
37677933 TTTTTTTATTTTAAGAAGGG
1 TTTTTTTA-GTTAAGAAGGG
37677953 TTTT
1 TTTT
37677957 CAATGAAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.21, C:0.00, G:0.19, T:0.60
Consensus pattern (19 bp):
TTTTTTTAGTTAAGAAGGG
Found at i:37677972 original size:18 final size:18
Alignment explanation
Indices: 37677951--37678003 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 18
37677941 TTTTAAGAAG
37677951 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
37677969 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
* *
37677987 GATTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
37678004 TTCAATGTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
17 7 0.21
18 26 0.79
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:37689435 original size:27 final size:27
Alignment explanation
Indices: 37689405--37689466 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
37689395 TTTTACTAAA
*
37689405 ATACCCCTAAGTATG-AAAATTACTATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
37689432 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
37689458 ATACCCCTA
1 ATACCCCTA
37689467 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 21 0.68
27 8 0.26
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:37689612 original size:27 final size:28
Alignment explanation
Indices: 37689574--37689672 Score: 139
Period size: 27 Copynumber: 3.6 Consensus size: 28
37689564 GGAAGCATTT
37689574 TGGTGGCTCTGCCACAAATATCTA-ATC
1 TGGTGGCTCTGCCACAAATATCTATATC
*
37689601 TGGTGGCTCTGCCACAAATATCTATTTC
1 TGGTGGCTCTGCCACAAATATCTATATC
*
37689629 TGGTGGCTCTGCCAC-AATATCTGTATC
1 TGGTGGCTCTGCCACAAATATCTATATC
* * *
37689656 TAGTGACTCTGTCACAA
1 TGGTGGCTCTGCCACAA
37689673 TATTTGTTCT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 46 0.72
28 18 0.28
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (28 bp):
TGGTGGCTCTGCCACAAATATCTATATC
Found at i:37697153 original size:27 final size:27
Alignment explanation
Indices: 37697102--37697212 Score: 163
Period size: 27 Copynumber: 4.1 Consensus size: 27
37697092 AACATGGCTG
*
37697102 CCAGAACAGATAA-TGTGACAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
37697128 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
37697155 CCAGAATAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
37697182 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
37697209 CCAG
1 CCAG
37697213 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 15 0.19
27 60 0.78
28 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:37700805 original size:39 final size:40
Alignment explanation
Indices: 37700760--37700967 Score: 109
Period size: 40 Copynumber: 5.2 Consensus size: 40
37700750 CGGGGTTTAG
* * *
37700760 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
37700799 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * *
37700839 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* * ** * * * *
37700879 CCAGATGTAGTCGCTTAGCACAAAAGCCTTC-GGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
* * * * *
37700919 CCGGATATAGTCC-CTTAGCACAAAAGCCTTCGGAACTTAGC
1 CCGGATATA-ACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
37700960 CCGGATAT
1 CCGGATAT
37700968 CATTCGAGTA
Statistics
Matches: 145, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 18 0.12
40 92 0.63
41 35 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:37700830 original size:40 final size:41
Alignment explanation
Indices: 37700783--37700967 Score: 234
Period size: 40 Copynumber: 4.6 Consensus size: 41
37700773 CTCGCACAAG
* * * * * *
37700783 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
37700823 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
37700863 GCCTTC-GGATCTTAGCCCAGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
37700904 GCCTTC-GGACTTAGCCCGGATATAGTCCCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
37700944 GCCTTCGGAACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
37700968 CATTCGAGTA
Statistics
Matches: 130, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
39 3 0.02
40 93 0.72
41 34 0.26
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:37700950 original size:81 final size:81
Alignment explanation
Indices: 37700813--37700961 Score: 237
Period size: 81 Copynumber: 1.8 Consensus size: 81
37700803 ATATGGTCAC
* * * * *
37700813 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAG
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCCCTAGCACAAAAGCCTTCGGAACTTAG
37700878 CCCAGATGTAGTCGCT
66 CCCAGATGTAGTCGCT
37700894 TAGCACAAAAGCCTTC-GGACTTAGCCCGGATATAGTCCCTTAGCACAAAAGCCTTCGGAACTTA
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCCC-TAGCACAAAAGCCTTCGGAACTTA
37700958 GCCC
65 GCCC
37700962 GGATATCATT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
80 22 0.35
81 40 0.65
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (81 bp):
TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCCCTAGCACAAAAGCCTTCGGAACTTAG
CCCAGATGTAGTCGCT
Found at i:37703596 original size:28 final size:28
Alignment explanation
Indices: 37703528--37703641 Score: 119
Period size: 27 Copynumber: 4.2 Consensus size: 28
37703518 GGAGGAAACG
* *
37703528 TTCTGGTGGCTCTGCTACAAATACCT-T
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
37703555 ATCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
37703583 TTCTGGTGGCTCTGCCA-TAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * * *
37703610 ATCTTGTGACTCTGTCGC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
37703636 TTCTGG
1 TTCTGG
37703642 CAGTCGTGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 4 0.05
27 52 0.71
28 17 0.23
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:37703613 original size:55 final size:52
Alignment explanation
Indices: 37703527--37703641 Score: 133
Period size: 55 Copynumber: 2.1 Consensus size: 52
37703517 TGGAGGAAAC
*
37703527 GTTCTGGTGGCTCTGCTACAAATACCTTATCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGC-ACAAATACCTTATCTGGTGACTCTGCCAC-AATATCT
* * * *
37703581 GTTTCTGGTGGCTCTGC-CATAATATCTGTATCTTGTGACTCTGTCGCAATATCT
1 G-TTCTGGTGGCTCTGCACA-AATACCT-TATCTGGTGACTCTGCCACAATATCT
37703635 GTTCTGG
1 GTTCTGG
37703642 CAGTCGTGCT
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
53 8 0.15
54 15 0.28
55 30 0.57
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.37
Consensus pattern (52 bp):
GTTCTGGTGGCTCTGCACAAATACCTTATCTGGTGACTCTGCCACAATATCT
Found at i:37707123 original size:45 final size:45
Alignment explanation
Indices: 37707063--37707163 Score: 132
Period size: 45 Copynumber: 2.2 Consensus size: 45
37707053 ATAGTCAAAG
* * **
37707063 CTATCTTAATCAATCTTGCACTGAAGTGAC-AATACATAGCCGAAA
1 CTATCTCAATAAATCTTGCACCAAAGTG-CTAATACATAGCCGAAA
* *
37707108 CTATCTCAATAAATCTTGCACCAAAGTGCTAATACATAGTCGAAG
1 CTATCTCAATAAATCTTGCACCAAAGTGCTAATACATAGCCGAAA
37707153 CTATCTCAATA
1 CTATCTCAATA
37707164 TCATATCTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
44 1 0.02
45 48 0.98
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.28
Consensus pattern (45 bp):
CTATCTCAATAAATCTTGCACCAAAGTGCTAATACATAGCCGAAA
Found at i:37711551 original size:39 final size:40
Alignment explanation
Indices: 37711434--37711617 Score: 195
Period size: 40 Copynumber: 4.7 Consensus size: 40
37711424 GCTCCTCGTT
*
37711434 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCA
* *
37711474 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
*
37711514 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
* *
37711553 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGT-ATC-TCGCA
*
37711594 C-AA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37711618 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.02
39 49 0.39
40 64 0.51
41 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
Found at i:37711578 original size:79 final size:82
Alignment explanation
Indices: 37711434--37711617 Score: 215
Period size: 79 Copynumber: 2.3 Consensus size: 82
37711424 GCTCCTCGTT
* *
37711434 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
*
37711498 GAT-TTAGTAAC-TCGCA
66 GATATT-GTAACTTAGCA
**
37711514 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
*
37711575 CGGATATTGTCACTTAGCA
64 CGGATATTGTAACTTAGCA
*
37711594 C-AA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37711618 CATCATTCAA
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 13 0.14
79 56 0.62
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
GATATTGTAACTTAGCA
Found at i:37715542 original size:29 final size:29
Alignment explanation
Indices: 37715479--37715546 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
37715469 TAATCAACCG
*
37715479 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
37715508 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
37715537 CGCACACTTA
1 CGCACACTTA
37715547 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:37715660 original size:176 final size:176
Alignment explanation
Indices: 37715366--37715871 Score: 944
Period size: 176 Copynumber: 2.9 Consensus size: 176
37715356 AACTCAAGGT
* *
37715366 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
37715431 GAAAATATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCAT
66 GAAAATATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCAT
37715496 GTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 GTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
37715542 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
37715607 GAAAATATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCAT
66 GAAAATATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCAT
*
37715672 GCACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 GTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
37715718 ACTTACCTTTTCCGCTGTCCAAAATCGACTTGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
37715783 G-AAA-ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCAT
66 GAAAATATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCAT
*
37715846 GTACTTTAAACTCGCACACTTAGTGC
131 GTACTTTAAACTCACACACTTAGTGC
37715872 TGTACAATTT
Statistics
Matches: 323, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
174 82 0.25
175 3 0.01
176 238 0.74
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (176 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCAT
GTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:37715718 original size:29 final size:29
Alignment explanation
Indices: 37715655--37715722 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
37715645 TAATCAACCG
37715655 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
37715684 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
37715713 CGCACACTTA
1 CGCACACTTA
37715723 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:37715863 original size:29 final size:30
Alignment explanation
Indices: 37715824--37715902 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
37715814 CTTAATAATC
37715824 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
37715854 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
37715883 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
37715903 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:37719044 original size:44 final size:44
Alignment explanation
Indices: 37718996--37719177 Score: 102
Period size: 44 Copynumber: 4.1 Consensus size: 44
37718986 AAGATTGTAG
37718996 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGCAA
* * ** * **
37719040 ATCTTAGCTTTCCC--AG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTA--TCTCCCTAAGCAGTAGT-GG-AGTAGATCAAAGACGGCAA
** * * * * ** * ** ** * *
37719084 GCCTTGTCTTCCTGAGCAGCAACGGAGTAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGCAA
37719128 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGCAA
37719172 ATCTTA
1 ATCTTA
37719178 GCTTTCCAAG
Statistics
Matches: 91, Mismatches: 39, Indels: 16
0.62 0.27 0.11
Matches are distributed among these distances:
42 8 0.09
43 3 0.03
44 71 0.78
45 3 0.03
46 6 0.07
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGCAA
Found at i:37719621 original size:132 final size:132
Alignment explanation
Indices: 37718946--37719624 Score: 1106
Period size: 132 Copynumber: 5.1 Consensus size: 132
37718936 ACCGGTGAAA
* *
37718946 CACCAAGCCTTGTCTTCCTGAGCAGCAACGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * *
37719011 GCAGTAGTGGAGTAGATCAAAGACGGCAAATCTTAGCTTTCCCAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
37719076 GC
131 GC
* *
37719078 CACCAAGCCTTGTCTTCCTGAGCAGCAACGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* *
37719143 GCAGTAGTGGAGTAGATCAAAGACGGCAAATCTTAGCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
37719208 GC
131 GC
* * *
37719210 CACCAAGCCTTGTCTCTCTGAGCAGTAGCGGGGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * * * *
37719275 GTAGTAGTGGAGCAGATCAAAGACGACAAATCTCATCTTTCCAAGATAATGGGAAGTAGATTTAA
66 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
37719340 GC
131 GC
* *
37719342 CACCAAGTCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * * *
37719407 GTATTAGTGGAGAAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
*
37719472 AC
131 GC
*
37719474 CACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * *
37719539 GCAGTAGTGGAGCAGATCGAGGACAGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
37719604 GC
131 GC
37719606 CACCAAGCCTTGTCTCCCT
1 CACCAAGCCTTGTCTCCCT
37719625 AAAGTTGCAG
Statistics
Matches: 512, Mismatches: 35, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 512 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (132 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GC
Found at i:37719747 original size:44 final size:43
Alignment explanation
Indices: 37719657--37720643 Score: 373
Period size: 44 Copynumber: 22.6 Consensus size: 43
37719647 AAACCTTGGA
* * * * * *
37719657 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
*
37719697 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAG
* * * *
37719741 TCTTATC-CTCCTGAAATTCCAGT-GAGGCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAG
* * **
37719786 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCTGACAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAAG-CAAG
* * * *
37719830 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AATCACAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA-AG
* * * * * * * * *
37719873 ATCTTATCTCTCTAAATTTGCAG-AGAGCA-AATCA-CATCTAG
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
* * * *
37719914 TCTTGTCTCCTTGAAGTTGCAATGGAGCAGACTGAGCAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAG
* * *
37719958 TCTTATC-CTCCTGAAGTTGCAGT-AAGGCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAG
* * *
37720003 TCTTATCTCCCTGAAGTTGCAGTGGAGCAG-GTTA-AAGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AG
* * ** * * **
37720047 TCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAA-AACCTTGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG
* * * * *
37720090 ATCTTATCTCTCTGAAGTTGCAGAT--AGCAGA-T-CGCATCCAG
1 -TCTTATCTCCCTGAAGTTGCAG-TGGAGCAGACTAAGAAGCAAG
** * * *
37720131 TCTTATC-CTCCAAAAGTTACAGT-GAGGCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAG
* * * *
37720176 TCTTATCTCCCTGAAGTTGCGGTGGAGCAG-GTTA-AAGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AG
* * * ** * * *
37720220 TCCTATCTTCTTGAAGTTGCAGTGGAGTGGATTAA-AACCTTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG
* * * * *
37720263 ATCTTATCTCTCTGAAGTTACAG-AGAGCAGA-GAGCAGATTGCATCTAG
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTA--AGA-AGCA---AG
* *
37720311 TCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGTAATCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAG
* *
37720355 TCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTCAAGATGGCGAA-
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGC-AAG
* * * * * *
37720400 TCCTATCTCCCTGAAGTTGCAGTGGGGCATACTAAATAAACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAAGCAAG
* * * *
37720444 TCCTGTCTCCCTGAAGTTGCAGTGGAGCAGATTAA-AACCACAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA-AG
* * * * * * *
37720487 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-TCA-CATCGAG
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
*
37720529 TCTTATCTCCCTGAAGTTGCAGTTGAGCAGACTCAAGAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-AAGCAAG
* * * * * * * * *
37720574 CCTTATCCCCCTAAAATTGCAGTGGGGCATACTAAATAAACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAAGCAAG
* * *
37720618 TCCTGTCTCCCT-AAGTTGTAGTGGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAG
37720644 TGGATTAGAG
Statistics
Matches: 703, Mismatches: 177, Indels: 131
0.70 0.18 0.13
Matches are distributed among these distances:
39 2 0.00
40 53 0.08
41 52 0.07
42 27 0.04
43 48 0.07
44 306 0.44
45 169 0.24
46 12 0.02
47 23 0.03
48 10 0.01
49 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
Found at i:37720135 original size:173 final size:173
Alignment explanation
Indices: 37719956--37720293 Score: 595
Period size: 173 Copynumber: 2.0 Consensus size: 173
37719946 TGAGCAAGCA
** *
37719956 AGTCTTATCCTCCTGAAGTTGCAGTAAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
1 AGTCTTATCCTCCAAAAGTTACAGTAAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
37720021 GCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACC
66 GCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* * *
37720086 TTGGATCTTATCTCTCTGAAGTTGCAGATAGCAGATCGCATCC
131 TTAGATCTTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCC
*
37720129 AGTCTTATCCTCCAAAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
1 AGTCTTATCCTCCAAAAGTTACAGTAAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* *
37720194 GCGGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCTTGAAGTTGCAGTGGAGTGGATTAAAACC
66 GCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACC
37720259 TTAGATCTTATCTCTCTGAAGTTACAGAGAGCAGA
131 TTAGATCTTATCTCTCTGAAGTTACAGAGAGCAGA
37720294 GAGCAGATTG
Statistics
Matches: 156, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
173 156 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (173 bp):
AGTCTTATCCTCCAAAAGTTACAGTAAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
GCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACC
TTAGATCTTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCC
Found at i:37720237 original size:217 final size:217
Alignment explanation
Indices: 37719618--37720510 Score: 816
Period size: 217 Copynumber: 4.1 Consensus size: 217
37719608 CCAAGCCTTG
*
37719618 TCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAG
1 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAG
*
37719683 CAGATCGCATCTAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACT-AAG-TAAGCAAGTCTTA
66 CAGATCGCATCTAGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTGAAGAT-AGCAAGTCTTA
* * *
37719746 TCCTCCTGAAATTCCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGG
129 TCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGG
*
37719811 AGCAGATTAAAGCTGACAATCCTA
194 AGCAGATTAAAGCCGACAATCCTA
* *** * *
37719835 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTAAATTTGCAGAGAG
1 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAG
* * * *
37719900 CAAATCACATCTAGTCTTGTCTCCTTGAAGTTGCAATGGAGCAGACTG-AGCA-AGCAAGTCTTA
66 CAGATCGCATCTAGTCTTATCTCC-TGAAGTTGCAGTGGAGCAGACTGAAG-ATAGCAAGTCTTA
*
37719963 TCCTCCTGAAGTTGCAGTAAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGG
129 TCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGG
* *
37720028 AGCAGGTTAAAGCCGATAATCCTA
194 AGCAGATTAAAGCCGACAATCCTA
* * *
37720052 TCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGATAG
1 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAG
* ** * * *
37720117 CAGATCGCATCCAGTCTTATCCTCCAAAAGTTACAGT-GAGGCAGACTGAAGATGGCAAATCTTA
66 CAGATCGCATCTAGTCTTAT-CTCCTGAAGTTGCAGTGGA-GCAGACTGAAGATAGCAAGTCTTA
* * * * * * *
37720181 T-CTCCCTGAAGTTGCGGTG-GAGCAG-GTTAA-A-GCCGATAATCCTATCTTCTTGAAGTTGCA
129 TCCT-CCTGAAGTTGCAGTGAG-GCAGACTGAAGATGGC-A-AATCTTATCTCCCTGAAGTTGCA
** * * * *
37720241 GTGGAGTGGATTAAAACCTTA-GATCTTA
190 GTGGAGCAGATTAAAGCC-GACAATCCTA
* * * ** ** * * *
37720269 TCTCTCTGAAGTTACAG-AGAGCAGAGAGCAGATTGCATCTAG-TCTTATCTCCCTGAAGTTGCA
1 TCTCCCTGAAGTTGCAGTGGAGC-G-GATTA-A-AACCT-TGGATCTTATCTCTCTGAAGTTGCA
* * * * * *
37720332 -ATGGAGCAGACTAAGTAATCAAGTCTTATCCTCCTGAAGTTGCAGTGGGGCAGACTCAAGATGG
61 GA--GAGCAGA-T-CG-CATCTAGTCTTAT-CTCCTGAAGTTGCAGTGGAGCAGACTGAAGATAG
* * * ** * *
37720396 CGAA-TCCTAT-CTCCCTGAAGTTGCAGTGGGGCATACT-AA-ATAAACAAATCCTGTCTCCCTG
120 C-AAGTCTTATCCT-CCTGAAGTTGCAGTGAGGCAGACTGAAGAT-GGCAAATCTTATCTCCCTG
* *
37720457 AAGTTGCAGTGGAGCAGATTAAAACC-ACAGATCTTA
182 AAGTTGCAGTGGAGCAGATTAAAGCCGACA-ATCCTA
*
37720493 TCTCTCTGAAGTTGCAGT
1 TCTCCCTGAAGTTGCAGT
37720511 AGAGTAGATC
Statistics
Matches: 557, Mismatches: 87, Indels: 56
0.80 0.12 0.08
Matches are distributed among these distances:
215 2 0.00
216 9 0.02
217 341 0.61
218 37 0.07
219 2 0.00
220 22 0.04
221 8 0.01
222 2 0.00
223 1 0.00
224 126 0.23
225 6 0.01
226 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (217 bp):
TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAG
CAGATCGCATCTAGTCTTATCTCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGTCTTATC
CTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAG
CAGATTAAAGCCGACAATCCTA
Found at i:37720395 original size:224 final size:219
Alignment explanation
Indices: 37720129--37720643 Score: 558
Period size: 224 Copynumber: 2.3 Consensus size: 219
37720119 GATCGCATCC
* * * * *
37720129 AGTCTTATCCTCCAAAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
1 AGTCTTATCCTCCTAAAGTTGCAGTGGGGCAGACTCAAGATGGCAAATCCTATCTCCCTGAAGTT
* ** * ** * * **
37720194 GCGGTGGAGCA-GGTTAA-AGCCGATAATCCTATCTTCTTGAAGTTGCAGTGGAGTGGATTAAAA
66 GCAGTGGAGCATACTAAATAAAC-A-AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA
** ** *
37720257 CCTTAGATCTTATCTCTCTGAAGTTACAGAGAGCAG-AGAGCAGATTGCATCTAGTCTTATCTCC
129 CCACAGATCTTATCTCTCTGAAGTT-------GCAGTAGAGCAGATCACATCGAGTCTTATCTCC
* *
37720321 CTGAAGTTGCAATGGAGCAGACT-AAGTAATCA
187 CTGAAGTTGCAATGGAGCAGACTCAAGAAAGCA
* *
37720353 AGTCTTATCCTCCTGAAGTTGCAGTGGGGCAGACTCAAGATGGCGAATCCTATCTCCCTGAAGTT
1 AGTCTTATCCTCCTAAAGTTGCAGTGGGGCAGACTCAAGATGGCAAATCCTATCTCCCTGAAGTT
* *
37720418 GCAGTGGGGCATACTAAATAAACAAATCCTGTCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
66 GCAGTGGAGCATACTAAATAAACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
*
37720483 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCACATCGAGTCTTATCTCCCTGAAGTTG
131 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCGAGTCTTATCTCCCTGAAGTTG
* *
37720548 CAGTTGAGCAGACTCAAGAAAGCA
196 CAATGGAGCAGACTCAAGAAAGCA
* * * * ** *
37720572 AGCCTTATCCCCCTAAAATTGCAGTGGGGCATACT-AA-ATAAACAAATCCTGTCTCCCT-AAGT
1 AGTCTTATCCTCCTAAAGTTGCAGTGGGGCAGACTCAAGAT-GGCAAATCCTATCTCCCTGAAGT
*
37720634 TGTAGTGGAG
65 TGCAGTGGAG
37720644 TGGATTAGAG
Statistics
Matches: 246, Mismatches: 40, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
217 18 0.07
218 61 0.25
219 37 0.15
224 124 0.50
225 4 0.02
226 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (219 bp):
AGTCTTATCCTCCTAAAGTTGCAGTGGGGCAGACTCAAGATGGCAAATCCTATCTCCCTGAAGTT
GCAGTGGAGCATACTAAATAAACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCGAGTCTTATCTCCCTGAAGTTG
CAATGGAGCAGACTCAAGAAAGCA
Found at i:37720669 original size:397 final size:397
Alignment explanation
Indices: 37719739--37720682 Score: 977
Period size: 397 Copynumber: 2.4 Consensus size: 397
37719729 TAAGTAAGCA
* * * ** * * * **
37719739 AGTCTTATCCTCCTGAAA-TTCCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAGGT
1 AGTCTTATCCTCC-AAAAGTTACAGTGAGGCAGACTCAAGAAAGCAAACCTTATCCCCCTAAAAT
* * * *
37719803 TGCAGTGGAGCAGA-T-TAAAGCTGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAA
65 TGCAGTGGAGCA-ACTAAAAAAC-GATAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAA
* * * *
37719866 ATCACAGATCTTATCTCTCT-AAATT------TGCAGAGAGCAAATCACATCTAGTCTTGTCTCC
128 ACCATAGATCTTATCTCTCTAAAATTACAGAGAGCAGAGAGCAAATCACATCTAGTCTTATCTCC
* *
37719924 TTGAAGTTGCAATGGAGCAGACTGAGCAAGCAAGTCTTATCCTCCTGAAGTTGCAGTAAGGCAGA
193 CTGAAGTTGCAATGGAGCAGACTAAGCAAGCAAGTCTTATCCTCCTGAAGTTGCAGTAAGGCAGA
* * ** * **
37719989 CTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATC
258 CTCAAGATGGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAACTAAAAAACGATAATCCTATC
* ** *** *
37720054 TTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGATAGCA
323 TCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCA
*
37720119 GATCGCATCC
388 GATCACATCC
* ** * * * *
37720129 AGTCTTATCCTCCAAAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
1 AGTCTTATCCTCCAAAAGTTACAGTGAGGCAGACTCAAGAAAGCAAACCTTATCCCCCTAAAATT
* ** * ** * *
37720194 GCGGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCTTGAAGTTGCAGTGGAGTGGATTAAAACC
66 GCAGTGGAGCAACTAAAAAACGATAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* * * * **
37720259 TTAGATCTTATCTCTCTGAAGTTACAGAGAGCAGAGAGCAGATTGCATCTAGTCTTATCTCCCTG
131 ATAGATCTTATCTCTCTAAAATTACAGAGAGCAGAGAGCAAATCACATCTAGTCTTATCTCCCTG
* * **
37720324 AAGTTGCAATGGAGCAGACTAAGTAATCAAGTCTTATCCTCCTGAAGTTGCAGTGGGGCAGACTC
196 AAGTTGCAATGGAGCAGACTAAGCAAGCAAGTCTTATCCTCCTGAAGTTGCAGTAAGGCAGACTC
* * *
37720389 AAGATGGCGAATCCTATCTCCCTGAAGTTGCAGTGGGGCATACTAAATAAAC-A-AATCCTGTCT
261 AAGATGGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCA-ACTAAA-AAACGATAATCCTATCT
*
37720452 CCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTA
324 CCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAG-AGAGCA
*
37720517 GATCACATCG
388 GATCACATCC
** * *
37720527 AGTCTTAT-CTCCCTGAAGTTGCAGTTGA-GCAGACTCAAGAAAGCAAGCCTTATCCCCCTAAAA
1 AGTCTTATCCT-CCAAAAGTTACAG-TGAGGCAGACTCAAGAAAGCAAACCTTATCCCCCTAAAA
* * * *
37720590 TTGCAGTGGGGCATACTAAATAAAC-A-AATCCTGTCTCCCT-AAGTTGTAGTGGAGTGGATTAG
64 TTGCAGTGGAGCA-ACTAAA-AAACGATAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAA
*** * *
37720652 AGTGATGGATTTTATCTCTCTAAAATTACAG
127 AACCATAGATCTTATCTCTCTAAAATTACAG
37720683 TTAAGCAGAT
Statistics
Matches: 459, Mismatches: 78, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
389 3 0.01
390 123 0.27
391 7 0.02
397 232 0.51
398 83 0.18
399 9 0.02
400 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (397 bp):
AGTCTTATCCTCCAAAAGTTACAGTGAGGCAGACTCAAGAAAGCAAACCTTATCCCCCTAAAATT
GCAGTGGAGCAACTAAAAAACGATAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
ATAGATCTTATCTCTCTAAAATTACAGAGAGCAGAGAGCAAATCACATCTAGTCTTATCTCCCTG
AAGTTGCAATGGAGCAGACTAAGCAAGCAAGTCTTATCCTCCTGAAGTTGCAGTAAGGCAGACTC
AAGATGGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAACTAAAAAACGATAATCCTATCTCC
CTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGAT
CACATCC
Found at i:37720977 original size:19 final size:19
Alignment explanation
Indices: 37720953--37721027 Score: 96
Period size: 19 Copynumber: 3.8 Consensus size: 19
37720943 AATCTTTGAG
37720953 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
37720972 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
37720991 GATATATTAAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
**
37721012 GATATTTAATCTTAGA
1 GATATGCAATCTTAGA
37721028 AGATATGATT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 34 0.67
21 17 0.33
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.40
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:37721053 original size:22 final size:22
Alignment explanation
Indices: 37720985--37721050 Score: 75
Period size: 21 Copynumber: 3.0 Consensus size: 22
37720975 ATGCAATCTT
37720985 AGATATGATATATTAAATCTT---
1 AGATATGATAT-TT-AATCTTAGA
37721006 AGATATGATATTTAATCTTAGA
1 AGATATGATATTTAATCTTAGA
*
37721028 AGATATGATTTTGTAATCTTAGA
1 AGATATGATATT-TAATCTTAGA
37721051 GATTTAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 6 0.15
20 2 0.05
21 11 0.28
22 11 0.28
23 10 0.25
ACGTcount: A:0.39, C:0.05, G:0.14, T:0.42
Consensus pattern (22 bp):
AGATATGATATTTAATCTTAGA
Found at i:37721060 original size:22 final size:23
Alignment explanation
Indices: 37721018--37721060 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
37721008 ATATGATATT
*
37721018 TAATCTTAGAAGATATGATTTTG
1 TAATCTTAGAAGATATAATTTTG
*
37721041 TAATCTTAG-AGATTTAATTT
1 TAATCTTAGAAGATATAATTT
37721061 GTAGATACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.47
Consensus pattern (23 bp):
TAATCTTAGAAGATATAATTTTG
Found at i:37721259 original size:21 final size:20
Alignment explanation
Indices: 37721227--37721266 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
37721217 GGCTTACTGT
* *
37721227 TTTTTTTCCATTTTCGATTA
1 TTTTTTACCATTTACGATTA
37721247 TTTTTTACTCATTTACGATT
1 TTTTTTAC-CATTTACGATT
37721267 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.17, C:0.15, G:0.05, T:0.62
Consensus pattern (20 bp):
TTTTTTACCATTTACGATTA
Found at i:37723874 original size:42 final size:42
Alignment explanation
Indices: 37723794--37723875 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
37723784 CGTTTTCTCT
* **
37723794 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
37723836 ATGCCATAGCCCAACTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
37723876 CACACCGATG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 34 0.94
43 2 0.06
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:37726439 original size:23 final size:22
Alignment explanation
Indices: 37726396--37726439 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
37726386 TTCTAAGCCG
37726396 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
37726419 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
37726440 TTAGTCAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:37726553 original size:45 final size:45
Alignment explanation
Indices: 37726486--37726577 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
37726476 CAGATACTCA
* * *
37726486 GTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCCG
1 GTGGAATCAGCACATAGAAACCACCTTACTAATCAATGATGTCCG
* * *
37726531 GTGGAATCAGCATATGGAAACCACCTTACTAATCAATGATGTTCG
1 GTGGAATCAGCACATAGAAACCACCTTACTAATCAATGATGTCCG
37726576 GT
1 GT
37726578 TCACATAGTA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.27
Consensus pattern (45 bp):
GTGGAATCAGCACATAGAAACCACCTTACTAATCAATGATGTCCG
Found at i:37726659 original size:51 final size:51
Alignment explanation
Indices: 37726574--37726767 Score: 214
Period size: 51 Copynumber: 3.8 Consensus size: 51
37726564 CAATGATGTT
* * *
37726574 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGA-CTATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCTA-TACCATC
* * * * * *
37726625 TGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCTATACCATC
* * * * *
37726676 CGGTACGCATAGTAGCCTGCATATAGTACTACACATGCGACCTAT--CATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCTATACCA-TC
*
37726726 CGGTACACGTAGTTGCCTGCACATAGTACTACACACGTGACC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACC
37726768 ATCAGTTACA
Statistics
Matches: 116, Mismatches: 25, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
49 1 0.01
50 38 0.33
51 75 0.65
52 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (51 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCTATACCATC
Found at i:37726758 original size:101 final size:101
Alignment explanation
Indices: 37726581--37726765 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 101
37726571 GTTCGGTTCA
* *
37726581 CATAGTAGCCTGCACATAGTACTACACATGTGACTATTACCATCTGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACTATTA-CATCCGATACACGTAGTAGCCTGCA
37726646 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
65 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
* * *
37726683 CATAGTAGCCTGCATATAGTACTACACATGCGACCTA-T-CATTCCGGTACACGTAGTTGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGA-CTATTACA-TCCGATACACGTAGTAGCCTGC
37726746 ACATAGTACTACACACGTGA
64 ACATAGTACTACACACGTGA
37726766 CCATCAGTTA
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
100 2 0.03
101 39 0.51
102 32 0.42
103 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACTATTACATCCGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCCGGTACG
Found at i:37729207 original size:8 final size:8
Alignment explanation
Indices: 37729186--37729215 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
37729176 GCAAGCCCTA
37729186 TATTTCATT
1 TATTTCA-T
37729195 TATTTCAT
1 TATTTCAT
37729203 TATTTCAT
1 TATTTCAT
37729211 TATTT
1 TATTT
37729216 AAAATTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 14 0.67
9 7 0.33
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (8 bp):
TATTTCAT
Found at i:37746542 original size:63 final size:63
Alignment explanation
Indices: 37746443--37746569 Score: 157
Period size: 63 Copynumber: 2.0 Consensus size: 63
37746433 ATGATATGCC
* * * * *
37746443 TACACCACATCTTTTTAATTTTCTTTATTTATTTAAAAAGGCACATT-TACTTATCCTTTTTTG
1 TACACCACATCTGTTTAAGTTGCTTTATGTATTTAAAAAGGCACATTAT-CATATCCTTTTTTG
* * * *
37746506 TACACGACATCTGTTTAAGTTGCTTTCTGTATTTAAAAAGTCACATTATCATATCTTTTTTTG
1 TACACCACATCTGTTTAAGTTGCTTTATGTATTTAAAAAGGCACATTATCATATCCTTTTTTG
37746569 T
1 T
37746570 TAAAGCTTCA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
63 53 0.98
64 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.08, T:0.49
Consensus pattern (63 bp):
TACACCACATCTGTTTAAGTTGCTTTATGTATTTAAAAAGGCACATTATCATATCCTTTTTTG
Found at i:37748304 original size:25 final size:25
Alignment explanation
Indices: 37748242--37748336 Score: 82
Period size: 25 Copynumber: 3.8 Consensus size: 25
37748232 CTCCAAAACT
*
37748242 CGTGAGAGCATACCGATTTATAGCT
1 CGTGAGAGCATACCGATTTATAGCC
* * * *
37748267 CATAACAGCATACTGATTTATAGCC
1 CGTGAGAGCATACCGATTTATAGCC
* * * * *
37748292 CGTGAGAGTATACCAATCTACAGCT
1 CGTGAGAGCATACCGATTTATAGCC
* *
37748317 CGAGTGAGCATACCGATTTA
1 CGTGAGAGCATACCGATTTA
37748337 CAGCTTGTAT
Statistics
Matches: 51, Mismatches: 19, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (25 bp):
CGTGAGAGCATACCGATTTATAGCC
Found at i:37762936 original size:490 final size:490
Alignment explanation
Indices: 37762016--37763001 Score: 1445
Period size: 490 Copynumber: 2.0 Consensus size: 490
37762006 AGAAAAGAGC
* * * * *
37762016 TAAATTATTCAATAAATGTAAAAATTATTGCAATAAGACAATTAAAGCCGATGAATATTGTTCTT
1 TAAATTATTCAACAAATCTAAAAATTATTGCAATAAGACAATTAAAACCAATGAACATTGTTCTT
* *
37762081 GTACCTCCAACCAATCAACACCATGAAAAATGGGAAATAAATTGATTATGAGAACAAATCGACAC
66 GTACCTCCAACCAATCAACACCAAGAAAAATGGGAAATAAATTGATTATAAGAACAAATCGACAC
* * * * *
37762146 ACTTTATCTATCCTCGTGGATTAAGATTTTTGTGCACAGAAAATCTTAAATTAGGTAACCCTATT
131 ACTTTATCTATCCTCGTGGATTAAGATTCTAGTGCACAGAAAACCCTAAACTAGGTAACCCTATT
* *
37762211 CAGAGTGAAATTATTTAATTTTAGGTGCTCAACATTTATTCAACAACTTGCTCTTACTACAATGC
196 CAGAGTGAAATTATTTAATTTTAGGTGCTCAACATTCATTCAACAACTTGCTATTACTACAATGC
* * *
37762276 ACAGAAATAGTAGCAATTGAATTCTTGAAGCCCAGAACAATTTTATTTTCTTAATTTATCCTTCT
261 ACAGAAACAGTAGCAATTGAATTCTTAAAGCCCAGAACAATTTTATTTTCATAATTTATCCTTCT
* * * * * *
37762341 CTATACAACTCTGATGTAGACATTGCTATATTTCATTTCTCCTAAAATAAAGCCAAGTAAAGACG
326 CTATACAACTCTGATGTAGACATCGCGATAATTAATTTATCATAAAATAAAGCCAAGTAAAGACG
* ** * * *
37762406 CAAATTTTGGGTCATTTCAGATGCTATTGGCAACATCATCATACTTTCACTGGTAGTACTACCTA
391 CAAAATCAGGGTCATTTCAGATGCTATTGGCAACATCATCATACTTTCAATGGTAGTACAAACTA
* * *
37762471 ACTTATTCTAGAATTTACCCAAATTTGCAAAGAAA
456 ACCTATTCTAGAATATACCAAAATTTGCAAAGAAA
* *
37762506 TAAATTATTCAACAATTCTAAAAATTATTGCAATAAGACAATTAAAACCAATTAACATCT-TTCT
1 TAAATTATTCAACAAATCTAAAAATTATTGCAATAAGACAATTAAAACCAATGAACAT-TGTTCT
* *
37762570 TGTACCTCCAACCAATGAACACCAAGAAAAATGGGCAATAAATTGATTATAAGAACAAATCGACA
65 TGTACCTCCAACCAATCAACACCAAGAAAAATGGGAAATAAATTGATTATAAGAACAAATCGACA
* **
37762635 CACTTTATCTTTCCTCGTGGATTAAGATTCTAGTGCATGGAAAACCCTAAACTAGGTAACCCTAT
130 CACTTTATCTATCCTCGTGGATTAAGATTCTAGTGCACAGAAAACCCTAAACTAGGTAACCCTAT
* * * *
37762700 TCAGAGTGAAATTGTTTAATTTTAGGTGCTCAATATTCATTCAACAACTTGCTATTACTGCAATT
195 TCAGAGTGAAATTATTTAATTTTAGGTGCTCAACATTCATTCAACAACTTGCTATTACTACAATG
* * * * *
37762765 CGCA-ATAACAGTAGGAGTTGAATTCTTAAAGCCCAGAACAATTTTATTTTCATAGTTTATTCTT
260 CACAGA-AACAGTAGCAATTGAATTCTTAAAGCCCAGAACAATTTTATTTTCATAATTTATCCTT
* * ** *
37762829 CTCTATATAACTCTGATGTAGACATCGCGATAATTAATTTATCATAAAATAAATCTGAGTAAATA
324 CTCTATACAACTCTGATGTAGACATCGCGATAATTAATTTATCATAAAATAAAGCCAAGTAAAGA
37762894 CGCAAAATCAGGGTCATTTCAGATGCTATTGGCAACATCATCATACTTTCAATGGTAGTACAAAC
389 CGCAAAATCAGGGTCATTTCAGATGCTATTGGCAACATCATCATACTTTCAATGGTAGTACAAAC
* *
37762959 TAACCTATTCTAGAATATACCAAAATTTGGAATGAAA
454 TAACCTATTCTAGAATATACCAAAATTTGCAAAGAAA
37762996 TAAATT
1 TAAATT
37763002 TGATATCCCT
Statistics
Matches: 439, Mismatches: 55, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
489 1 0.00
490 437 1.00
491 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (490 bp):
TAAATTATTCAACAAATCTAAAAATTATTGCAATAAGACAATTAAAACCAATGAACATTGTTCTT
GTACCTCCAACCAATCAACACCAAGAAAAATGGGAAATAAATTGATTATAAGAACAAATCGACAC
ACTTTATCTATCCTCGTGGATTAAGATTCTAGTGCACAGAAAACCCTAAACTAGGTAACCCTATT
CAGAGTGAAATTATTTAATTTTAGGTGCTCAACATTCATTCAACAACTTGCTATTACTACAATGC
ACAGAAACAGTAGCAATTGAATTCTTAAAGCCCAGAACAATTTTATTTTCATAATTTATCCTTCT
CTATACAACTCTGATGTAGACATCGCGATAATTAATTTATCATAAAATAAAGCCAAGTAAAGACG
CAAAATCAGGGTCATTTCAGATGCTATTGGCAACATCATCATACTTTCAATGGTAGTACAAACTA
ACCTATTCTAGAATATACCAAAATTTGCAAAGAAA
Found at i:37768915 original size:85 final size:85
Alignment explanation
Indices: 37768770--37768940 Score: 297
Period size: 85 Copynumber: 2.0 Consensus size: 85
37768760 AACGAAAAAT
**
37768770 TGAGATTAAGATCATTGAAAATACAGATGACAGGCTCATCCCATTTCCAAAACGACGCACAGGAA
1 TGAGATTAAGATCATTGAAAATACAGATGACAGGCTCATCCCATTTCCAAAACGACGCACAACAA
37768835 TTTATAAGAAAATCTCTATG
66 TTTATAAGAAAATCTCTATG
* * *
37768855 TGAGATTAAGATCATTGAAAATACAGATGACAGGCTCATCCCATTTTCAAAATGATGCACAACAA
1 TGAGATTAAGATCATTGAAAATACAGATGACAGGCTCATCCCATTTCCAAAACGACGCACAACAA
37768920 TTTATAAGAAAATCTCTATG
66 TTTATAAGAAAATCTCTATG
37768940 T
1 T
37768941 TCTCCACTCT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 81 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (85 bp):
TGAGATTAAGATCATTGAAAATACAGATGACAGGCTCATCCCATTTCCAAAACGACGCACAACAA
TTTATAAGAAAATCTCTATG
Found at i:37787686 original size:27 final size:27
Alignment explanation
Indices: 37787648--37787703 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
37787638 TTCATTTCTC
37787648 GTAAAATAAAGCCAAGTAAAGACGCAA
1 GTAAAATAAAGCCAAGTAAAGACGCAA
*
37787675 GTAAAATAAAGCCAAGTAAAGGCGCAA
1 GTAAAATAAAGCCAAGTAAAGACGCAA
37787702 GT
1 GT
37787704 TTTGGGTCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.52, C:0.14, G:0.21, T:0.12
Consensus pattern (27 bp):
GTAAAATAAAGCCAAGTAAAGACGCAA
Found at i:37787692 original size:15 final size:15
Alignment explanation
Indices: 37787648--37787694 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
37787638 TTCATTTCTC
37787648 GTAAAATAAAGCCAA
1 GTAAAATAAAGCCAA
* *
37787663 GT-AAA-GACG-CAA
1 GTAAAATAAAGCCAA
37787675 GTAAAATAAAGCCAA
1 GTAAAATAAAGCCAA
37787690 GTAAA
1 GTAAA
37787695 GGCGCAAGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
12 5 0.20
13 5 0.20
14 5 0.20
15 10 0.40
ACGTcount: A:0.57, C:0.13, G:0.17, T:0.13
Consensus pattern (15 bp):
GTAAAATAAAGCCAA
Found at i:37815232 original size:27 final size:27
Alignment explanation
Indices: 37815193--37815747 Score: 536
Period size: 27 Copynumber: 20.6 Consensus size: 27
37815183 ATTCGTGGGC
37815193 AAATGACCGAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
*
37815220 AAATGACCAAAATACCC-CAGAAGGGTA
1 AAATGACCGAAATACCCTC-GAAGGGTA
** *
37815247 AAATGATTGAAATACCCTTGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
37815274 AAATG-CGCGAAATATCCTCGAAAGGTA
1 AAATGAC-CGAAATACCCTCGAAGGGTA
* * *
37815301 AAATGACCAAAATACCCCCGAAAGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* ** *
37815328 AAATAATTGAAATGCCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
*
37815355 AAATGACCAAAATACCC-CTGAAGGGTA
1 AAATGACCGAAATACCCTC-GAAGGGTA
*
37815382 AAATGATCGAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
*
37815409 AAATGATCGAAATATCCC-CGAAGGGTA
1 AAATGACCGAAATA-CCCTCGAAGGGTA
* * * **
37815436 AAATGACTGCAATACCCCCGAAGGAAA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
37815463 AAATGACCGAAATA-CCTCTAAAAGGTA
1 AAATGACCGAAATACCCTC-GAAGGGTA
* * * * *
37815490 AAATGACCAAAATACCTTCAAAAGGAA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
37815517 AAATGACTGAAATACCCTTGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* * *
37815544 AATTGACTGAAATACCC-CTAAAGGGTA
1 AAATGACCGAAATACCCTC-GAAGGGTA
* * *
37815571 AAATGACCAAAATACGCTCGAAGGAT-
1 AAATGACCGAAATACCCTCGAAGGGTA
*
37815597 AAATGACCAAAATACCCTCGACA-GGTA
1 AAATGACCGAAATACCCTCGA-AGGGTA
* **
37815624 AAATGACTGAAATACCCTCGAAAAGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
37815651 AAATGACTGAAATA-CCTCAAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
37815677 AAATGATCGAAATACCCTCGAAAGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
37815704 AATTGACCGAAATA-CCTCTGATGGGTA
1 AAATGACCGAAATACCCTC-GAAGGGTA
* *
37815731 AATTGACCAAAATACCC
1 AAATGACCGAAATACCC
37815748 CCAAAAGTTG
Statistics
Matches: 435, Mismatches: 75, Indels: 35
0.80 0.14 0.06
Matches are distributed among these distances:
26 56 0.13
27 368 0.85
28 11 0.03
ACGTcount: A:0.44, C:0.20, G:0.19, T:0.18
Consensus pattern (27 bp):
AAATGACCGAAATACCCTCGAAGGGTA
Found at i:37823190 original size:26 final size:27
Alignment explanation
Indices: 37823066--37823278 Score: 288
Period size: 27 Copynumber: 8.0 Consensus size: 27
37823056 GCAAATGATA
*
37823066 GAAATACCCTCGTAGGGTAAAATGACC
1 GAAATACCCTCGAAGGGTAAAATGACC
* *
37823093 GAAATACCCTCGAAGGTTAAAATGAGC
1 GAAATACCCTCGAAGGGTAAAATGACC
*
37823120 AAAATACCC-CTGAAGGGTAAAATGACC
1 GAAATACCCTC-GAAGGGTAAAATGACC
* *
37823147 GAAGTACCCTCGAAGGGTAAAATAACC
1 GAAATACCCTCGAAGGGTAAAATGACC
**
37823174 GAAATA-CCTCGAAGGGTAAAATGATT
1 GAAATACCCTCGAAGGGTAAAATGACC
*
37823200 GAAATACCCTCGAAGGGTAAAATGACT
1 GAAATACCCTCGAAGGGTAAAATGACC
* **
37823227 AAAATA-CCTCGAAGGGTAAAATGATA
1 GAAATACCCTCGAAGGGTAAAATGACC
37823253 GAAATACCCTCGAAGGGTAAAATGAC
1 GAAATACCCTCGAAGGGTAAAATGAC
37823279 TAAATGGTGA
Statistics
Matches: 163, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 47 0.29
27 115 0.71
28 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.18
Consensus pattern (27 bp):
GAAATACCCTCGAAGGGTAAAATGACC
Found at i:37823220 original size:80 final size:81
Alignment explanation
Indices: 37823067--37823277 Score: 293
Period size: 80 Copynumber: 2.6 Consensus size: 81
37823057 CAAATGATAG
* *
37823067 AAATACCCTCGTAGGGTAAAATGACCGAAATACCCTCGAAGGTTAAAATGAGCAAAATACCCCTG
1 AAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGAGCAAAATACCCCTG
*
37823132 AAGGGTAAAATGACCG
66 AAGGGTAAAATGACCA
* * ***
37823148 AAGTACCCTCGAAGGGTAAAATAACCGAAATA-CCTCGAAGGGTAAAATGATTGAAATA-CCCTC
1 AAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGAGCAAAATACCCCT-
*
37823211 GAAGGGTAAAATGACTA
65 GAAGGGTAAAATGACCA
**
37823228 AAATA-CCTCGAAGGGTAAAATGATAGAAATACCCTCGAAGGGTAAAATGA
1 AAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGA
37823278 CTAAATGGTG
Statistics
Matches: 115, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 27 0.23
80 59 0.51
81 29 0.25
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.18
Consensus pattern (81 bp):
AAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGAGCAAAATACCCCTG
AAGGGTAAAATGACCA
Found at i:37823279 original size:53 final size:53
Alignment explanation
Indices: 37823058--37823282 Score: 301
Period size: 53 Copynumber: 4.2 Consensus size: 53
37823048 ATTCGTGGGC
* *
37823058 AAATGA-TAGAAATACCCTCGTAGGGTAAAATGACCGAAATACCCTCGAAGGTTA
1 AAATGACTA-AAATA-CCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGGTA
* *
37823112 AAATGAGC-AAAATACCCCTGAAGGGTAAAATGACCGAAGTACCCTCGAAGGGTA
1 AAATGA-CTAAAATACCTC-GAAGGGTAAAATGACCGAAATACCCTCGAAGGGTA
* ** **
37823166 AAATAACCGAAATACCTCGAAGGGTAAAATGATTGAAATACCCTCGAAGGGTA
1 AAATGACTAAAATACCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGGTA
**
37823219 AAATGACTAAAATACCTCGAAGGGTAAAATGATAGAAATACCCTCGAAGGGTA
1 AAATGACTAAAATACCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGGTA
37823272 AAATGACTAAA
1 AAATGACTAAA
37823283 TGGTGATATG
Statistics
Matches: 153, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
53 96 0.63
54 56 0.37
55 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.18
Consensus pattern (53 bp):
AAATGACTAAAATACCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGGTA
Found at i:37857122 original size:12 final size:11
Alignment explanation
Indices: 37857093--37857136 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
37857083 AATCATTTAA
*
37857093 TAATAAAATAA
1 TAATAAAATAT
*
37857104 TACTAAAAATAT
1 TAAT-AAAATAT
37857116 TAATAAAATAT
1 TAATAAAATAT
*
37857127 TAATTAAATA
1 TAATAAAATA
37857137 ACATTTATCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:37859219 original size:50 final size:50
Alignment explanation
Indices: 37859061--37859325 Score: 275
Period size: 50 Copynumber: 5.3 Consensus size: 50
37859051 GATAATAACA
* * * * *
37859061 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGG-CTATTTCCTGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAC-CTCTCATAT-CGG
* * * * * ** *
37859110 TGCCAATGCAATATCCCAGATATGGTCTTACGTGGGAGTTCTCATATTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * ** **
37859160 TGCCCATGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCAGCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
37859210 TGTCAATGCCGTGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
*
37859260 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
37859310 TGCCAACGCCATGTCC
1 TGCCAACGCCATGTCC
37859326 TCTCATATCA
Statistics
Matches: 179, Mismatches: 34, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
49 36 0.20
50 143 0.80
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:37859330 original size:27 final size:27
Alignment explanation
Indices: 37859297--37859352 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
37859287 TTACATGGGA
37859297 CCTCTCATATCAGTGCCAACGCCATGT
1 CCTCTCATATCAGTGCCAACGCCATGT
*
37859324 CCTCTCATATCAGTGCCAATGCCATGT
1 CCTCTCATATCAGTGCCAACGCCATGT
37859351 CC
1 CC
37859353 CAGACATGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.21, C:0.38, G:0.14, T:0.27
Consensus pattern (27 bp):
CCTCTCATATCAGTGCCAACGCCATGT
Found at i:37859374 original size:77 final size:77
Alignment explanation
Indices: 37859247--37859403 Score: 287
Period size: 77 Copynumber: 2.0 Consensus size: 77
37859237 TTACATGGGA
*
37859247 CCTCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTG
1 CCTCTCATATCAGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTG
37859312 CCAACGCCATGT
66 CCAACGCCATGT
* *
37859324 CCTCTCATATCAGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTG
1 CCTCTCATATCAGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTG
37859389 CCAACGCCATGT
66 CCAACGCCATGT
37859401 CCT
1 CCT
37859404 AGACATGGTC
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.22, C:0.34, G:0.18, T:0.25
Consensus pattern (77 bp):
CCTCTCATATCAGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTG
CCAACGCCATGT
Found at i:37859399 original size:50 final size:50
Alignment explanation
Indices: 37859324--37859619 Score: 373
Period size: 50 Copynumber: 5.9 Consensus size: 50
37859314 AACGCCATGT
*
37859324 CCTCTCATATCAGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 CCTCTCATCTCAGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
* *
37859374 CCTCTCATCTCAGTGCCAACGCCATGTCCTAGACATGGTCTTACATGGGA
1 CCTCTCATCTCAGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
* *
37859424 CCTCTCATCTCTGTGCCAATGCCATGTACCAGACATGGTCTTACATGGGA
1 CCTCTCATCTCAGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
* *
37859474 TCTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 CCTCTCATCTCAGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
* * *
37859524 CCTCTCATAATTTCAATATGCCAATGCCATGTCTCAGACATGGTCTTACACT-GG-
1 CCTCTC---ATCTC-A-GTGCCAATGCCATGTCCCAGACATGGTCTTACA-TGGGA
* * * * * *
37859578 -CTCACATATCAATGTCGATGCCATGTCCCAAACATGGTCTTA
1 CCTCTCATCTCAGTGCCAATGCCATGTCCCAGACATGGTCTTA
37859620 TACGAGATCG
Statistics
Matches: 219, Mismatches: 21, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
48 27 0.12
49 1 0.00
50 149 0.68
53 8 0.04
55 33 0.15
56 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (50 bp):
CCTCTCATCTCAGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
Found at i:37859423 original size:127 final size:127
Alignment explanation
Indices: 37859213--37859450 Score: 413
Period size: 127 Copynumber: 1.9 Consensus size: 127
37859203 AGCTCGGTGT
* *
37859213 CAATGCCGTGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCA
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTCCCA
37859278 GACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTCCTCTCATATCAGTGC
66 GACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTCCTCTCATATCAGTGC
* *
37859340 CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCCTA
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTCCCA
* * *
37859405 GACATGGTCTTACATGGGACCTCTCATCTCTGTGCCAATGCCATGT
66 GACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGT
37859451 ACCAGACATG
Statistics
Matches: 104, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
127 104 1.00
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (127 bp):
CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTCCCA
GACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTCCTCTCATATCAGTGC
Found at i:37859450 original size:177 final size:177
Alignment explanation
Indices: 37859149--37859502 Score: 528
Period size: 177 Copynumber: 2.0 Consensus size: 177
37859139 ACGTGGGAGT
** * * * * *
37859149 TCTCATATTGGTGCCCATGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCAGCTCGGTGTC
1 TCTCATATCAGTGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAGCTCAGTGCC
* * *
37859214 AATGCCGTGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAG
66 AACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTACCAG
37859279 ACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTCC
131 ACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTCC
* *
37859326 TCTCATATCAGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCC
1 TCTCATATCAGTGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAGCTCAGTGCC
* * * *
37859391 AACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATCTCTGTGCCAATGCCATGTACCAG
66 AACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTACCAG
* * * *
37859456 ACATGGTCTTACATGGGATCTCTCATCTCGGTGCCAATGCCATGTCC
131 ACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTCC
37859503 CAGACATGGT
Statistics
Matches: 157, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
177 157 1.00
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (177 bp):
TCTCATATCAGTGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAGCTCAGTGCC
AACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTACCAG
ACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTCC
Found at i:37859505 original size:227 final size:227
Alignment explanation
Indices: 37859110--37859532 Score: 657
Period size: 227 Copynumber: 1.9 Consensus size: 227
37859100 TTTCCTGTAC
* * ** ** * *
37859110 TGCCAATGCAATATCCCAGATATGGTCTTACGTGGGAGTTCTCATATTGGTGCCCATGCCATGTC
1 TGCCAATGCAATATCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTC
* * * *
37859175 CTAGACATGGTCTTACGGGGGACCTCTCAGCTCGGTGTCAATGCCGTGTCCCAGACATGGTCTTA
66 CTAGACATGGTCTTACAGGGGACCTCTCAGCTCGGTGCCAATGCCATGTACCAGACATGGTCTTA
37859240 CATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
131 CATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
37859305 ATCAGTGCCAACGCCATGTCCTCTCATATCAG
196 ATCAGTGCCAACGCCATGTCCTCTCATATCAG
* * *
37859337 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTC
1 TGCCAATGCAATATCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTC
* * *
37859402 CTAGACATGGTCTTACATGGGACCTCTCATCTCTGTGCCAATGCCATGTACCAGACATGGTCTTA
66 CTAGACATGGTCTTACAGGGGACCTCTCAGCTCGGTGCCAATGCCATGTACCAGACATGGTCTTA
* * *
37859467 CATGGGATCTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
131 CATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
37859532 A
196 A
37859533 ATTTCAATAT
Statistics
Matches: 175, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
227 175 1.00
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.27
Consensus pattern (227 bp):
TGCCAATGCAATATCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTC
CTAGACATGGTCTTACAGGGGACCTCTCAGCTCGGTGCCAATGCCATGTACCAGACATGGTCTTA
CATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
ATCAGTGCCAACGCCATGTCCTCTCATATCAG
Done.