Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 146 of 187
Found at i:44047306 original size:44 final size:44
Alignment explanation
Indices: 44047082--44047308 Score: 200
Period size: 44 Copynumber: 5.2 Consensus size: 44
44047072 CAACCGAGAG
*
44047082 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAAGA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGA
* * * * * *
44047126 AGGCAAGATCTTTTGTCTTCAACCAGC-TC-C-ATCACA-ACCAAGA
1 AGGCAAGGT-TTGTGTCTTCGACCTGCTTCGCTGTCA-ATA-CAGGA
44047169 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGA
1 -AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGA
* * * * * *
44047214 AGGCAAGATCTTTTGTCTTCAACCAGC-TC-C-ATCACA-ACCGAGA
1 AGGCAAGGT-TTGTGTCTTCGACCTGCTTCGCTGTCA-ATACAG-GA
*
44047257 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGA
44047302 AGGCAAG
1 AGGCAAG
44047309 ATCTGCAACT
Statistics
Matches: 143, Mismatches: 24, Indels: 32
0.72 0.12 0.16
Matches are distributed among these distances:
42 10 0.07
43 39 0.27
44 47 0.33
45 38 0.27
46 9 0.06
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (44 bp):
AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGA
Found at i:44048425 original size:20 final size:21
Alignment explanation
Indices: 44048400--44048443 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
44048390 GGTATAGCAA
44048400 GATCAC-ACATGCCCCAATCT
1 GATCACTACATGCCCCAATCT
* *
44048420 GATCACTTCATGCCCCATTCT
1 GATCACTACATGCCCCAATCT
44048441 GAT
1 GAT
44048444 TAATATTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.25, C:0.36, G:0.11, T:0.27
Consensus pattern (21 bp):
GATCACTACATGCCCCAATCT
Found at i:44053891 original size:4 final size:4
Alignment explanation
Indices: 44053882--44053933 Score: 59
Period size: 4 Copynumber: 12.5 Consensus size: 4
44053872 AATATAATGG
* * *
44053882 ATAA ATAA ATAA GTAA ATAA ATAA ATGA ATAA ATGA ATCAA ATAA ATGAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA AT-AA ATAA AT-AA
44053932 AT
1 AT
44053934 TATAAAAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
4 33 0.82
5 7 0.17
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (4 bp):
ATAA
Found at i:44055693 original size:20 final size:20
Alignment explanation
Indices: 44055668--44055705 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
44055658 CTTGTACGGG
44055668 ATTTGCACTTCGGTGCCCTT
1 ATTTGCACTTCGGTGCCCTT
44055688 ATTTGCACTTCGGTGCCC
1 ATTTGCACTTCGGTGCCC
44055706 CTGTATACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.11, C:0.32, G:0.21, T:0.37
Consensus pattern (20 bp):
ATTTGCACTTCGGTGCCCTT
Found at i:44065263 original size:27 final size:26
Alignment explanation
Indices: 44065181--44065269 Score: 119
Period size: 25 Copynumber: 3.5 Consensus size: 26
44065171 TCCTGTACAT
*
44065181 GTATACTCACACGAGCTGTG-AATCG
1 GTATGCTCACACGAGCTGTGAAATCG
44065206 GTATGCTCACACGAGCTGT-AAATCG
1 GTATGCTCACACGAGCTGTGAAATCG
* *
44065231 GTATGCTCACACGAACTGTGAAAATGG
1 GTATGCTCACACGAGCTGTG-AAATCG
*
44065258 GCATGCTCACAC
1 GTATGCTCACAC
44065270 AAGTTGTGGG
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
25 41 0.72
27 16 0.28
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.22
Consensus pattern (26 bp):
GTATGCTCACACGAGCTGTGAAATCG
Found at i:44070933 original size:3 final size:3
Alignment explanation
Indices: 44070925--44070958 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
44070915 TAATATTTCC
* *
44070925 ATT ATT ATT ATT ATT TTT ATT ATT TTT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
44070959 GTTTTTTACT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
ATT
Found at i:44070953 original size:24 final size:24
Alignment explanation
Indices: 44070926--44070980 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
44070916 AATATTTCCA
* * *
44070926 TTATTATTATTATTTTTA-TTATTT
1 TTATTATTAGT-TTTTTACTTAATC
44070950 TTATTATTAGTTTTTTACTTAATC
1 TTATTATTAGTTTTTTACTTAATC
44070974 TTATTAT
1 TTATTAT
44070981 ATAGATCTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (24 bp):
TTATTATTAGTTTTTTACTTAATC
Found at i:44077949 original size:82 final size:82
Alignment explanation
Indices: 44077807--44078073 Score: 419
Period size: 82 Copynumber: 3.3 Consensus size: 82
44077797 TTAACGGCAA
* * * *
44077807 TTTTGAAGAAGCGCCGCTAATGATCTAGCCTTTAGCGGCGTTTTTGAAGAAGCGCTGCTAATGCT
1 TTTTGAAAAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCT
*
44077872 CGGGCCTTTAGCGGCGT
66 CAGGCCTTTAGCGGCGT
*
44077889 TTTTGAAAAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCT
1 TTTTGAAAAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCT
*
44077954 CTGGCCTTTAGCGGCGT
66 CAGGCCTTTAGCGGCGT
* * * *
44077971 TTTTGAAAATGCGCCGCTAATACTC-GAGCCTTTAGCGGCGTTTTTGAAGAAGCGTCGCTAATAC
1 TTTTGAAAAAGCGCCGCTAATGCTCTG-GCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
44078035 TCAGGCCTTTAGCGGCGT
65 TCAGGCCTTTAGCGGCGT
44078053 TTTTGAAAAAGCGCCGCTAAT
1 TTTTGAAAAAGCGCCGCTAAT
44078074 AATAATAAAA
Statistics
Matches: 171, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
81 1 0.01
82 170 0.99
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (82 bp):
TTTTGAAAAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCT
CAGGCCTTTAGCGGCGT
Found at i:44078030 original size:123 final size:123
Alignment explanation
Indices: 44077807--44078073 Score: 428
Period size: 123 Copynumber: 2.2 Consensus size: 123
44077797 TTAACGGCAA
* * *
44077807 TTTTGAAGAAGCGCCGCTAATGATCTAGCCTTTAGCGGCGTTTTTGAAGAAGCGCTGCTAATGCT
1 TTTTGAAAAAGCGCCGCTAATGATCTAGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATACT
* * *
44077872 CGGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCGT
66 CGAGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATACTCAGGCCTTTAGCGGCGT
* *
44077930 TTTTGAAAAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCGTTTTTGAA-AATGCGCCGCTAATAC
1 TTTTGAAAAAGCGCCGCTAATGATCTAGCCTTTAGCGGCGTTTTTGAAGAA-GCGCCGCTAATAC
* *
44077994 TCGAGCCTTTAGCGGCGTTTTTGAAGAAGCGTCGCTAATACTCAGGCCTTTAGCGGCGT
65 TCGAGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATACTCAGGCCTTTAGCGGCGT
44078053 TTTTGAAAAAGCGCCGCTAAT
1 TTTTGAAAAAGCGCCGCTAAT
44078074 AATAATAAAA
Statistics
Matches: 133, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
122 2 0.02
123 131 0.98
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (123 bp):
TTTTGAAAAAGCGCCGCTAATGATCTAGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATACT
CGAGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATACTCAGGCCTTTAGCGGCGT
Found at i:44078074 original size:41 final size:41
Alignment explanation
Indices: 44077807--44078074 Score: 380
Period size: 41 Copynumber: 6.5 Consensus size: 41
44077797 TTAACGGCAA
*
44077807 TTTTGAAGAAGCGCCGCTAATGA-TCTA-GCCTTTAGCGGCGT
1 TTTTGAAAAAGCGCCGCTAAT-ACTC-AGGCCTTTAGCGGCGT
* * * *
44077848 TTTTGAAGAAGCGCTGCTAATGCTCGGGCCTTTAGCGGCGT
1 TTTTGAAAAAGCGCCGCTAATACTCAGGCCTTTAGCGGCGT
* *
44077889 TTTTGAAAAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCGT
1 TTTTGAAAAAGCGCCGCTAATACTCAGGCCTTTAGCGGCGT
* *
44077930 TTTTGAAAAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCGT
1 TTTTGAAAAAGCGCCGCTAATACTCAGGCCTTTAGCGGCGT
*
44077971 TTTTGAAAATGCGCCGCTAATACTC-GAGCCTTTAGCGGCGT
1 TTTTGAAAAAGCGCCGCTAATACTCAG-GCCTTTAGCGGCGT
* *
44078012 TTTTGAAGAAGCGTCGCTAATACTCAGGCCTTTAGCGGCGT
1 TTTTGAAAAAGCGCCGCTAATACTCAGGCCTTTAGCGGCGT
44078053 TTTTGAAAAAGCGCCGCTAATA
1 TTTTGAAAAAGCGCCGCTAATA
44078075 ATAATAAAAT
Statistics
Matches: 210, Mismatches: 13, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
40 1 0.00
41 208 0.99
42 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (41 bp):
TTTTGAAAAAGCGCCGCTAATACTCAGGCCTTTAGCGGCGT
Found at i:44079920 original size:21 final size:21
Alignment explanation
Indices: 44079896--44079941 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
44079886 TCCCTCCCCC
*
44079896 TCCCCCC-GAAATCCCAAACTT
1 TCCCCCCTAAAATCCCAAA-TT
*
44079917 TCCCCCCTAAAATCCCTAATT
1 TCCCCCCTAAAATCCCAAATT
44079938 TCCC
1 TCCC
44079942 ACATCCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.26, C:0.48, G:0.02, T:0.24
Consensus pattern (21 bp):
TCCCCCCTAAAATCCCAAATT
Found at i:44079922 original size:22 final size:21
Alignment explanation
Indices: 44079897--44079941 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
44079887 CCCTCCCCCT
*
44079897 CCCCCCGAAATCCCAAACTTTC
1 CCCCCCAAAATCCCAAA-TTTC
* *
44079919 CCCCCTAAAATCCCTAATTTC
1 CCCCCCAAAATCCCAAATTTC
44079940 CC
1 CC
44079942 ACATCCAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.27, C:0.49, G:0.02, T:0.22
Consensus pattern (21 bp):
CCCCCCAAAATCCCAAATTTC
Found at i:44081656 original size:88 final size:89
Alignment explanation
Indices: 44081560--44081723 Score: 204
Period size: 88 Copynumber: 1.9 Consensus size: 89
44081550 CCTCTTATTT
* ** * * * *
44081560 TATAAAAATTGAAAATTTAGTCTGGTTTTTGGTGAATATATGA-ACTTGTATTGTTAATTTGTGT
1 TATAAAAATTGAAAAGTTAGTCCAGTTTTTGGTAAATACATGATACATGAATTGTTAATTTGTGT
44081624 TAATTTGTTGCATTTAAAATGTTA
66 TAATTTGTTGCATTTAAAATGTTA
* * * * *
44081648 TATAAAAATTGACAAGTTGGTCCAGTTTTTGGTAAATACATTATACATGAATTGTTTATTTTTGT
1 TATAAAAATTGAAAAGTTAGTCCAGTTTTTGGTAAATACATGATACATGAATTGTTAATTTGTGT
*
44081713 TAATTTTTTGC
66 TAATTTGTTGC
44081724 TTGTAAATTG
Statistics
Matches: 62, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
88 35 0.56
89 27 0.44
ACGTcount: A:0.31, C:0.05, G:0.16, T:0.48
Consensus pattern (89 bp):
TATAAAAATTGAAAAGTTAGTCCAGTTTTTGGTAAATACATGATACATGAATTGTTAATTTGTGT
TAATTTGTTGCATTTAAAATGTTA
Found at i:44081940 original size:86 final size:86
Alignment explanation
Indices: 44081827--44082077 Score: 272
Period size: 86 Copynumber: 2.9 Consensus size: 86
44081817 TAAAAATTGA
* * * *
44081827 AAATTGAAAATTTAGTCTGCTTGTTGGTAAATGCATGAACTTGAACCATTTATTTTTGCTAATTT
1 AAATTGAAAAATTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAATTT
* *
44081892 GTTGCATATAAGTTGTTATA-
66 GTTGCATATAAATCGTTATAG
* *
44081912 AATATTGAAAAATTAGTCTGATTTTTGGTAAATACATGAACTTGAACCATTGATTTTTGTTAATT
1 AA-ATTGAAAAATTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAATT
44081977 TGTTGCATATAAATCGTTATAG
65 TGTTGCATATAAATCGTTATAG
* * * * ** * ** *
44081999 AAATTGAAGATTTAGCCCT-AATGCCGGTAAATATATGAACTATGAATAATTGATTTTTTGCGAA
1 AAATTGAAAAATTAG-TCTGATTGTTGGTAAATACATGAACT-TGAACCATTGA-TTTTTGCTAA
* *
44082063 TTTGTTTCACATAAA
63 TTTGTTGCATATAAA
44082078 CTGTTGTAAG
Statistics
Matches: 139, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
85 2 0.01
86 103 0.74
87 13 0.09
88 21 0.15
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.41
Consensus pattern (86 bp):
AAATTGAAAAATTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAATTT
GTTGCATATAAATCGTTATAG
Found at i:44082133 original size:40 final size:40
Alignment explanation
Indices: 44082089--44082165 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
44082079 TGTTGTAAGA
* * *
44082089 TTGATTTGTGTTAATTTCTTGCATA-TAAATTATTGAAATG
1 TTGATTTGTGATAATTCCTTACATATTAAA-TATTGAAATG
*
44082129 TTGATTTTTGATAATTCCTTACATATTAAATATTGAA
1 TTGATTTGTGATAATTCCTTACATATTAAATATTGAA
44082166 GTGCTGATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 28 0.88
41 4 0.12
ACGTcount: A:0.32, C:0.06, G:0.12, T:0.49
Consensus pattern (40 bp):
TTGATTTGTGATAATTCCTTACATATTAAATATTGAAATG
Found at i:44084290 original size:43 final size:43
Alignment explanation
Indices: 44084243--44084404 Score: 200
Period size: 43 Copynumber: 3.8 Consensus size: 43
44084233 GAATTGTACT
* * *
44084243 TTTAGTGGCGTTTGTGATAAAAGCGTCGCTAAATATCATGTTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAATATCATGTTC
* * **
44084286 TTTAGCGGCGTTTGTGAGAAAAGTGCCACTAAAGCTCATGTTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAATATCATGTTC
* * * * *
44084329 TATAGCGGCGTTTGTGCGAAAAGCGCCGCT-AATGGTCTTGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAT-ATCATGTTC
44084372 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAA
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAA
44084405 GTTAGCGACG
Statistics
Matches: 100, Mismatches: 17, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 2 0.02
43 96 0.96
44 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAATATCATGTTC
Found at i:44086334 original size:16 final size:16
Alignment explanation
Indices: 44086303--44086339 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
44086293 ATGTGAAGAA
44086303 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
44086319 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
44086335 TATTA
1 TATTA
44086340 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:44088439 original size:29 final size:30
Alignment explanation
Indices: 44088380--44088437 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
44088370 TCCGAGCCTT
*
44088380 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
44088410 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
44088438 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:44088667 original size:13 final size:13
Alignment explanation
Indices: 44088649--44088680 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
44088639 TTTCCAGCAA
44088649 TTATGAATTTATT
1 TTATGAATTTATT
44088662 TTATGAATTTATT
1 TTATGAATTTATT
*
44088675 TGATGA
1 TTATGA
44088681 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:44088900 original size:50 final size:50
Alignment explanation
Indices: 44088775--44089221 Score: 549
Period size: 50 Copynumber: 8.8 Consensus size: 50
44088765 ATTTGGGTAA
* * *
44088775 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGAG---ATG
*
44088831 AGAGGCCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
44088881 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
44088931 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
44088981 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
44089031 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * * * * * * *
44089081 AGAGGTCTCC-CGTAAGACCGTGTCTTGGACATGGCATGGGCGCCTATATG
1 AGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * * * * *
44089131 AGAACTCTCATGTAAAACCATATCTGGGATATGGCATTGGCA--GTACAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-AGATG
* ** * * *
44089180 AAACATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
44089222 TGTTATATTC
Statistics
Matches: 349, Mismatches: 39, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
49 36 0.10
50 268 0.77
51 2 0.01
53 3 0.01
55 1 0.00
56 39 0.11
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:44090176 original size:19 final size:19
Alignment explanation
Indices: 44090149--44090186 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
44090139 ACAATGAGAT
44090149 AATTCAATTTTAGTGACGA
1 AATTCAATTTTAGTGACGA
*
44090168 AATTGAATTTTAGTGACGA
1 AATTCAATTTTAGTGACGA
44090187 GAGGTCAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (19 bp):
AATTCAATTTTAGTGACGA
Found at i:44103000 original size:44 final size:43
Alignment explanation
Indices: 44102942--44103050 Score: 105
Period size: 44 Copynumber: 2.5 Consensus size: 43
44102932 CTGCTCTCTA
* *
44102942 CAACTTCAGAGAGATAAGATCT-GTGGTTTTTATCCGC-CTCACTG
1 CAACTTCAG-GAGATAAGAT-TAGTGGCTTTAATCCGCTC-CACTG
* * * *
44102986 TAACTTCATGGAGATAGGATTATTGGCTTTAATCTGCTCCACTG
1 CAACTTCA-GGAGATAAGATTAGTGGCTTTAATCCGCTCCACTG
44103030 CAACTTCAGGGAGATAAGATT
1 CAACTTCA-GGAGATAAGATT
44103051 TGCCATCTTC
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
43 1 0.02
44 50 0.94
45 2 0.04
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (43 bp):
CAACTTCAGGAGATAAGATTAGTGGCTTTAATCCGCTCCACTG
Found at i:44103078 original size:45 final size:45
Alignment explanation
Indices: 44103018--44103234 Score: 261
Period size: 45 Copynumber: 4.9 Consensus size: 45
44103008 TTGGCTTTAA
44103018 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCAT-CTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATACTT-AG
* * *
44103063 TCTGC-CTCACTGCAACTTC-TGGAGGATAAGACTTG-CTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTTGCCATACTTAG
44103107 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCAT-CTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATACTT-AG
* * *
44103152 TCTGC-CTCACTGCAACTTC-TGGAGGATAAGACTTG-CTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTTGCCATACTTAG
*
44103196 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCAT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCAT
44103235 TGCAATGTTA
Statistics
Matches: 146, Mismatches: 13, Indels: 26
0.79 0.07 0.14
Matches are distributed among these distances:
44 72 0.49
45 74 0.51
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.29
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATACTTAG
Found at i:44103115 original size:89 final size:89
Alignment explanation
Indices: 44103018--44103234 Score: 425
Period size: 89 Copynumber: 2.4 Consensus size: 89
44103008 TTGGCTTTAA
44103018 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCT
44103083 GGAGGATAAGACTTGCTTACTTAG
66 GGAGGATAAGACTTGCTTACTTAG
44103107 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCT
44103172 GGAGGATAAGACTTGCTTACTTAG
66 GGAGGATAAGACTTGCTTACTTAG
*
44103196 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCAT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCAT
44103235 TGCAATGTTA
Statistics
Matches: 127, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 127 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.29
Consensus pattern (89 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCT
GGAGGATAAGACTTGCTTACTTAG
Found at i:44103954 original size:44 final size:44
Alignment explanation
Indices: 44103884--44104046 Score: 213
Period size: 44 Copynumber: 3.7 Consensus size: 44
44103874 TGTTATTTTT
* *
44103884 AACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACAATCTTC
1 AACCTATTCCACTGCTGAC-CAAGGAGATAGGATTCACAATCTTC
* * * *
44103928 AATCTATTCCACTGCTGCCCAAGGAGATAGAATTCTCAATCTTC
1 AACCTATTCCACTGCTGACCAAGGAGATAGGATTCACAATCTTC
* *
44103972 AACCTCTTCCACTGCTGACC-AGGAAGATAGGATTCACAATCTTT
1 AACCTATTCCACTGCTGACCAAGG-AGATAGGATTCACAATCTTC
*
44104016 AACCTATTCCACTGCTGACCAGGGAGATAGG
1 AACCTATTCCACTGCTGACCAAGGAGATAGG
44104047 GCTGGGGTCA
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
43 3 0.03
44 97 0.94
45 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (44 bp):
AACCTATTCCACTGCTGACCAAGGAGATAGGATTCACAATCTTC
Found at i:44104308 original size:44 final size:44
Alignment explanation
Indices: 44104079--44104310 Score: 125
Period size: 44 Copynumber: 5.3 Consensus size: 44
44104069 GCTGTCGATG
* *
44104079 CAGGAAGGCAAGATCTACTATTTTTAACCTGCTTCGCTGCAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTTCGCTGCAACC
* * * * * * ***
44104123 CAGGGAGGCAAGGT-TGGT-GTCTTAGATCC-ACTTCGCTGTCAGTG
1 CAGGAAGGCAAGATCTGCTATTTTTAG--CCTGCTTCGCTG-CAACC
*
44104167 CAGGAAGGTAAGATCTGCTATTTTTAGCCTG-TTCCGCTGCAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTT-CGCTGCAACC
* * * * * * * * ****
44104211 CAGGGAGGCAAGGT-TGGT-GTCTTCGATCTGCTTCACTGTCGGTG
1 CAGGAAGGCAAGATCTGCTATTTTTAG-CCTGCTTCGCTG-CAACC
* *
44104255 CAGGAAGGCAAGATCTGCTATTTTTAGCCTACTCCGCTGCAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTTCGCTGCAACC
*
44104299 CAGGGAGGCAAG
1 CAGGAAGGCAAG
44104311 GCTGGTGTCT
Statistics
Matches: 127, Mismatches: 49, Indels: 24
0.63 0.25 0.12
Matches are distributed among these distances:
42 8 0.06
43 20 0.16
44 71 0.56
45 19 0.15
46 9 0.07
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (44 bp):
CAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTTCGCTGCAACC
Found at i:44104375 original size:88 final size:88
Alignment explanation
Indices: 44104046--44104363 Score: 422
Period size: 88 Copynumber: 3.6 Consensus size: 88
44104036 AGGGAGATAG
* * * * * *
44104046 GGCTGGGGTCATCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTACTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCCATGCAGGAAGGCAAGATCTGCTATTTTTAGCCTAC
*
44104111 TTCGCTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * ** * *
44104134 GGTTGGTGTCTTAGATCCACTTCGCTGT-CAGTGCAGGAAGGTAAGATCTGCTATTTTTAGCCTG
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCCA-TGCAGGAAGGCAAGATCTGCTATTTTTAGCCTA
*
44104198 TTCCGCTGCAACCCAGGGAGGCAA
65 CTCCGCTGCAACCCAGGGAGGCAA
* * **
44104222 GGTTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTAC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCCATGCAGGAAGGCAAGATCTGCTATTTTTAGCCTAC
44104287 TCCGCTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * *
44104310 GGCTGGTGTCTTCGATCTGCTTCGCTATCCATGCAAGAAGTCAAGATTTGCTAT
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCCATGCAGGAAGGCAAGATCTGCTAT
44104364 CTTTGATCTA
Statistics
Matches: 199, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
87 1 0.01
88 198 0.99
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (88 bp):
GGCTGGTGTCTTCGATCTGCTTCGCTGTCCATGCAGGAAGGCAAGATCTGCTATTTTTAGCCTAC
TCCGCTGCAACCCAGGGAGGCAA
Found at i:44104401 original size:44 final size:44
Alignment explanation
Indices: 44104346--44104892 Score: 463
Period size: 44 Copynumber: 12.5 Consensus size: 44
44104336 ATCCATGCAA
* * * * * *
44104346 GAAGTCAAGATTTGCTATCTTTGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATATAG
* * * * * * * *
44104390 AAAGACAAGATTTTCTTTCTTCGATCCACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATATAG
* *
44104435 GAATG-CATGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAG
1 GAA-GACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATATAG
* * * * * *
44104478 GAAGACAGGACCTGCTATCTTCGATCTACTTAACGCCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATATAG
* * * *
44104522 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATATAG
* * *
44104567 GAAGACAAGATCTGC-ATCTTCGATCCACTTCGCTACAAATATAG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATATAG
* * * * * * *
44104611 GAAGAGAGGATCTGTTATCTTCGATCTACTTAACGCCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATATAG
* *
44104655 GAAGACAAGATCTGCTTTCTTCGATCTACTCTGC-CACCAATATGG
1 GAAGACAAGATCTGCTATCTTCGATCTACT-T-CACACCAATATAG
*
44104700 GAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATATAG
* * *
44104743 GAAGACAAGACCTGCTATCTTCGATCTATTTCACGCC-A-AT--
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATATAG
* * * * *
44104783 GAAGACAAGATCTGCTTTCTTCGATATACTCCGCCACCAATATGG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATATAG
*
44104828 GAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATATAG
* *
44104871 GAAGACAGGACCTGCTATCTTC
1 GAAGACAAGATCTGCTATCTTC
44104893 ACTGATTTGC
Statistics
Matches: 400, Mismatches: 82, Indels: 42
0.76 0.16 0.08
Matches are distributed among these distances:
40 27 0.07
41 3 0.01
42 8 0.02
43 69 0.17
44 201 0.50
45 91 0.23
46 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (44 bp):
GAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATATAG
Found at i:44104527 original size:132 final size:132
Alignment explanation
Indices: 44104358--44104892 Score: 839
Period size: 132 Copynumber: 4.1 Consensus size: 132
44104348 AGTCAAGATT
* * * * * *
44104358 TGCTATCTTTGATCTACTTCACGCCAATACATAAAGACAAGATTTTCTTTCTTCGATCCACTTCG
1 TGCTATCTTCGATCTACTTAACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
* *
44104423 CCACCAGTATGGGAATG-CATGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGG
66 CCACCAATATGGGAA-GACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGG
44104487 ACC
130 ACC
44104490 TGCTATCTTCGATCTACTTAACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
1 TGCTATCTTCGATCTACTTAACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
* * *
44104555 CCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACAAATATAGGAAGAGAGG
66 CCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGG
*
44104620 ATC
130 ACC
*
44104623 TGTTATCTTCGATCTACTTAACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC-TCT
1 TGCTATCTTCGATCTACTTAACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-
*
44104687 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAAG
65 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGG
44104752 ACC
130 ACC
* * * *
44104755 TGCTATCTTCGATCTATTTCACGCC---A-ATGAAGACAAGATCTGCTTTCTTCGATATACTCCG
1 TGCTATCTTCGATCTACTTAACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
44104816 CCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGA
66 CCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGA
44104881 CC
131 CC
44104883 TGCTATCTTC
1 TGCTATCTTC
44104893 ACTGATTTGC
Statistics
Matches: 377, Mismatches: 22, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
128 107 0.28
129 2 0.01
131 1 0.00
132 143 0.38
133 124 0.33
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (132 bp):
TGCTATCTTCGATCTACTTAACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
CCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGA
CC
Found at i:44104662 original size:265 final size:260
Alignment explanation
Indices: 44104358--44104892 Score: 831
Period size: 265 Copynumber: 2.0 Consensus size: 260
44104348 AGTCAAGATT
* * * *
44104358 TGCTATCTTTGATCTACTTCACGCCAATACATAAAGACAAGATTTTCTTTCTTCGATCCACT-TC
1 TGCTATCTTCGATCTACTTAACGCCAATACATAAAGACAAGATCTGCTTTCTTCGATCCACTCT-
* * *
44104422 GCCACCAGTATGGGAATG-CATGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAG
65 GCCACCAATATGGGAA-GACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAA
*
44104486 GACCTGCTATCTTCGATCTACTTAACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
129 GACCTGCTATCTTCGATCTACTTAACGCC---A-ATGAAGACAAGATCTGCTTTCTTCGATATAC
* *
44104551 TTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACAAATATAGGAAGA
190 TCCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTACAAATATAGGAAGA
* *
44104616 GAGGATC
254 CAGGACC
* * *
44104623 TGTTATCTTCGATCTACTTAACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCTG
1 TGCTATCTTCGATCTACTTAACGCCAATACATAAAGACAAGATCTGCTTTCTTCGATCCACTCTG
44104688 CCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGA
66 CCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGA
* *
44104753 CCTGCTATCTTCGATCTATTTCACGCCAATGAAGACAAGATCTGCTTTCTTCGATATACTCCGCC
131 CCTGCTATCTTCGATCTACTTAACGCCAATGAAGACAAGATCTGCTTTCTTCGATATACTCCGCC
*
44104818 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACC
196 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACAAATATAGGAAGACAGGACC
44104883 TGCTATCTTC
1 TGCTATCTTC
44104893 ACTGATTTGC
Statistics
Matches: 249, Mismatches: 19, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
260 30 0.12
261 75 0.30
262 1 0.00
264 1 0.00
265 141 0.57
266 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (260 bp):
TGCTATCTTCGATCTACTTAACGCCAATACATAAAGACAAGATCTGCTTTCTTCGATCCACTCTG
CCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGA
CCTGCTATCTTCGATCTACTTAACGCCAATGAAGACAAGATCTGCTTTCTTCGATATACTCCGCC
ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACAAATATAGGAAGACAGGACC
Found at i:44110079 original size:410 final size:413
Alignment explanation
Indices: 44109318--44110363 Score: 1677
Period size: 410 Copynumber: 2.5 Consensus size: 413
44109308 CCCGAACTAG
44109318 CAGGTTCCTCGATCTTCACCCATTATAGGCTCATACGGACCAAGTTCAATTCAGGGGAATACATT
1 CAGGTTCCTCGATCTTCACCCATTATAGGCTCATACGGACCAAGTTCAATTCAGGGGAATACATT
44109383 TCCCTATGGCTGCACGGAGATGAAAATCTCACGAAGACATAGGTACGGATGTATCCCGAAAGCAA
66 TCCCTATGGCTGCACGGAGATGAAAATCTCACGAAGACATAGGTACGGATGTATCCCGAAAGCAA
44109448 TCCGCTACCCTGCACAGAGGTGAAGACCTCACGAAGGAAATAGCTTCTCACTCCCACTTAAAACG
131 TCCGCTACCCTGCACAGAGGTGAAGACCTCACGAAGGAAATAGCTTCTCACTCCCACTTAAAACG
44109513 ATAAAATCAAGTGGTATGTAATGCAATATGCAGAAACATCAAAATTCAAACCAATAAAGTAATTA
196 ATAAAATCAAGTGGTATGTAATGCAATATGCAGAAACATCAAAATTCAAACCAATAAAGTAATTA
44109578 CAAACTGAAGTAATTATAATCGTAACAAAAATGGACAAAATACAACAAAATGATTGTAAATTTAA
261 CAAACTGAAGTAATTATAATCGTAACAAAAATGGACAAAATACAACAAAATGATTGTAAATTTAA
44109643 ACCAAGTTTTCAGGTGACCTCTAGAAATTCGGTGTGATTCTACCTAGGGTAGGCTCCTAAGGCTC
326 ACCAAGTTTTCAGGTGACCTCTAGAAATTCGGTGTGATTCTACCTAGGGTAGGCTCCTAAGGCTC
44109708 ATTATATGCAGTTCGGTTC-T-A
391 ATTATATGCAGTTCGGTTCATCA
44109729 -AGGTTCCTCGATCTTCACCCATTATAGGCTCATACGGACCAAGTTCAATTCAGGGGAATACATT
1 CAGGTTCCTCGATCTTCACCCATTATAGGCTCATACGGACCAAGTTCAATTCAGGGGAATACATT
44109793 TCCCTATGGCTGCACGGAGATGAAAATCTCACGAAGACATAGGTACGGATGTATCCCGAAAGCAA
66 TCCCTATGGCTGCACGGAGATGAAAATCTCACGAAGACATAGGTACGGATGTATCCCGAAAGCAA
44109858 TCCGCTACCCTGCACAGAGGTGAAGACCTCACGAAGGAAATAGCTTCTCACTCCCACTTAAAACG
131 TCCGCTACCCTGCACAGAGGTGAAGACCTCACGAAGGAAATAGCTTCTCACTCCCACTTAAAACG
44109923 ATAAAATCAAGTGGTATGTAATGCAATATGCAGAAACATCAAAATTCAAACCAATAAAGTAATTA
196 ATAAAATCAAGTGGTATGTAATGCAATATGCAGAAACATCAAAATTCAAACCAATAAAGTAATTA
44109988 CAAACTGAAGTAATTATAATCGTAACAAAAATGGACAAAATACAACAAAATGATTGTAAATTTAA
261 CAAACTGAAGTAATTATAATCGTAACAAAAATGGACAAAATACAACAAAATGATTGTAAATTTAA
44110053 ACCAAGTTTTCAGGTGACCTCTAGAAATTCGGTGTGATTCTACCTAGGGTAGGCTCCTAAGGCTC
326 ACCAAGTTTTCAGGTGACCTCTAGAAATTCGGTGTGATTCTACCTAGGGTAGGCTCCTAAGGCTC
44110118 ATTATATGCAGTTCGGTTCTAAAGTAAGGGTACCCGAA
391 ATTATATGCAGTTCGGTTC-------A---T---C--A
* ** * ** *
44110156 CCAGCAGATTCCTCAATCTTCACCCATTATAGGCTCATATAGATCAAGTTCGGTTCAGGGGAACA
1 -CAG--G-TTCCTCGATCTTCACCCATTATAGGCTCATACGGACCAAGTTCAATTCAGGGGAATA
* ** * * * *
44110221 CATTTTCCCTATGACTATACGGAGATGATAATCTCACGAAGGCATAGGTACCGATGTATTCCGAA
62 CA-TTTCCCTATGGCTGCACGGAGATGAAAATCTCACGAAGACATAGGTACGGATGTATCCCGAA
* * * ** * * *
44110286 AGCGATCCACTATCCTATACGGAGGTGAAAACCTCACGAAGG-AATAGTTTCTCACTCCCACTTA
126 AGCAATCCGCTACCCTGCACAGAGGTGAAGACCTCACGAAGGAAATAGCTTCTCACTCCCACTTA
*
44110350 AAACGGTAAAATCA
191 AAACGATAAAATCA
44110364 TTCAACTCAT
Statistics
Matches: 589, Mismatches: 23, Indels: 25
0.92 0.04 0.04
Matches are distributed among these distances:
410 408 0.69
421 1 0.00
427 1 0.00
429 2 0.00
431 1 0.00
432 86 0.15
433 90 0.15
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (413 bp):
CAGGTTCCTCGATCTTCACCCATTATAGGCTCATACGGACCAAGTTCAATTCAGGGGAATACATT
TCCCTATGGCTGCACGGAGATGAAAATCTCACGAAGACATAGGTACGGATGTATCCCGAAAGCAA
TCCGCTACCCTGCACAGAGGTGAAGACCTCACGAAGGAAATAGCTTCTCACTCCCACTTAAAACG
ATAAAATCAAGTGGTATGTAATGCAATATGCAGAAACATCAAAATTCAAACCAATAAAGTAATTA
CAAACTGAAGTAATTATAATCGTAACAAAAATGGACAAAATACAACAAAATGATTGTAAATTTAA
ACCAAGTTTTCAGGTGACCTCTAGAAATTCGGTGTGATTCTACCTAGGGTAGGCTCCTAAGGCTC
ATTATATGCAGTTCGGTTCATCA
Found at i:44112862 original size:12 final size:13
Alignment explanation
Indices: 44112842--44112868 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
44112832 GAGTTTCTGA
44112842 CATTTTTTTGGGC
1 CATTTTTTTGGGC
44112855 CATTTTTTTGGGC
1 CATTTTTTTGGGC
44112868 C
1 C
44112869 TCTGTTCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.19, G:0.22, T:0.52
Consensus pattern (13 bp):
CATTTTTTTGGGC
Found at i:44112993 original size:7 final size:7
Alignment explanation
Indices: 44112981--44113009 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
44112971 TTATATATAT
44112981 AATACTA
1 AATACTA
44112988 AATACTA
1 AATACTA
44112995 AATACTA
1 AATACTA
44113002 AATA-TA
1 AATACTA
44113008 AA
1 AA
44113010 ATCGATTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.18
7 18 0.82
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:44113000 original size:14 final size:13
Alignment explanation
Indices: 44112975--44113009 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
44112965 CATTAGTTAT
44112975 ATATATAATACTAA
1 ATATA-AATACTAA
44112989 ATACTAAATACTAA
1 ATA-TAAATACTAA
44113003 ATATAAA
1 ATATAAA
44113010 ATCGATTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 4 0.20
14 14 0.70
15 2 0.10
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.31
Consensus pattern (13 bp):
ATATAAATACTAA
Found at i:44118805 original size:50 final size:50
Alignment explanation
Indices: 44118730--44118923 Score: 262
Period size: 50 Copynumber: 3.9 Consensus size: 50
44118720 ATTTGGGTAA
* *
44118730 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATG
*
44118780 AGAGGTCCCATGTACGACCATGTCTGGGACATGGCGTTGGCATCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATG
** * * *
44118830 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCATCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATG
** * * *
44118880 AGAACATCCCATGTAATACCATGTCTAGGACATGGCTTTGGCAT
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAT
44118924 GTTATTATTA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
50 93 0.74
51 33 0.26
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATG
Found at i:44120916 original size:32 final size:33
Alignment explanation
Indices: 44120879--44120959 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
44120869 TTTTTGGTGG
* *
44120879 GGTGCCATAGTGAATGTCG-TG-GCCACCCTGGT
1 GGTGCCATAGAGAATG-CGATGACCCACCCTGGT
*
44120911 GGTGCCATAGAGAATGGGATGACCCACCCTGGT
1 GGTGCCATAGAGAATGCGATGACCCACCCTGGT
* *
44120944 GGTGCCTTAGAAAATG
1 GGTGCCATAGAGAATG
44120960 ACATCACTAG
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
31 1 0.02
32 17 0.40
33 24 0.57
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.22
Consensus pattern (33 bp):
GGTGCCATAGAGAATGCGATGACCCACCCTGGT
Found at i:44138327 original size:28 final size:30
Alignment explanation
Indices: 44138276--44138331 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
44138266 TTCATGCAAG
44138276 TTTTTTTAATTTTCATGAACTATTTATATA
1 TTTTTTTAATTTTCATGAACTATTTATATA
**
44138306 TTTTTTT-ATTTTTTTGAA-TATTTATA
1 TTTTTTTAATTTTCATGAACTATTTATA
44138332 GCTTTTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.33
29 9 0.38
30 7 0.29
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.66
Consensus pattern (30 bp):
TTTTTTTAATTTTCATGAACTATTTATATA
Found at i:44138337 original size:28 final size:30
Alignment explanation
Indices: 44138276--44138337 Score: 74
Period size: 28 Copynumber: 2.1 Consensus size: 30
44138266 TTCATGCAAG
*
44138276 TTTTTTTAATTTTCATGAACTATTTATATA
1 TTTTTTTAATTTTCATGAACTATTTATAGA
** *
44138306 TTTTTTT-ATTTTTTTGAA-TATTTATAGC
1 TTTTTTTAATTTTCATGAACTATTTATAGA
44138334 TTTT
1 TTTT
44138338 CAATTATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 12 0.43
29 9 0.32
30 7 0.25
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (30 bp):
TTTTTTTAATTTTCATGAACTATTTATAGA
Found at i:44139258 original size:39 final size:39
Alignment explanation
Indices: 44139204--44139291 Score: 149
Period size: 39 Copynumber: 2.3 Consensus size: 39
44139194 AAATAGGGTC
*
44139204 GATGTCGTGACATGGAGAAACCTAACTTTTTGACATCAT
1 GATGTCGTGACATGGAGAAACCTAACTTTGTGACATCAT
**
44139243 GATGTCGTGACATGGAGAAACCTAACTTTGTGATGTCAT
1 GATGTCGTGACATGGAGAAACCTAACTTTGTGACATCAT
44139282 GATGTCGTGA
1 GATGTCGTGA
44139292 TGTCATGATG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (39 bp):
GATGTCGTGACATGGAGAAACCTAACTTTGTGACATCAT
Found at i:44139286 original size:8 final size:8
Alignment explanation
Indices: 44139273--44139306 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
44139263 CCTAACTTTG
44139273 TGATGTCA
1 TGATGTCA
*
44139281 TGATGTCG
1 TGATGTCA
44139289 TGATGTCA
1 TGATGTCA
*
44139297 TGATGACA
1 TGATGTCA
44139305 TG
1 TG
44139307 TGCTAACTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.35
Consensus pattern (8 bp):
TGATGTCA
Found at i:44140203 original size:22 final size:22
Alignment explanation
Indices: 44140177--44140221 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
44140167 ATTCTATTAG
44140177 ATTAA-TTTAGAATAATAATTTA
1 ATTAAGTTTA-AATAATAATTTA
* *
44140199 ATTAAGTTTAATTAATATTTTA
1 ATTAAGTTTAAATAATAATTTA
44140221 A
1 A
44140222 ATATGCATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (22 bp):
ATTAAGTTTAAATAATAATTTA
Found at i:44143528 original size:21 final size:20
Alignment explanation
Indices: 44143499--44143544 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
44143489 CGAAATGCAA
44143499 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
44143520 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
44143540 T-AACC
1 TCAACC
44143545 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:44146083 original size:808 final size:808
Alignment explanation
Indices: 44144527--44146143 Score: 3234
Period size: 808 Copynumber: 2.0 Consensus size: 808
44144517 TGTAAATTTT
44144527 TGCGTTTCCACACCCCCAAACTTAATTCATTGCTCGTCCTGAGTAATGTACAAATTAAAAAGAAT
1 TGCGTTTCCACACCCCCAAACTTAATTCATTGCTCGTCCTGAGTAATGTACAAATTAAAAAGAAT
44144592 TACTCAAAAAACACCTTTGAATAATTTCTTCAAAATAACATTCTTCCAAGAATTATGAATTTAAT
66 TACTCAAAAAACACCTTTGAATAATTTCTTCAAAATAACATTCTTCCAAGAATTATGAATTTAAT
44144657 ATACTTATGCTCAAAAACAAAAAGTGGTGCCCGAGGCCTGGCCCATTTTCTAAACGGGCCTTGTT
131 ATACTTATGCTCAAAAACAAAAAGTGGTGCCCGAGGCCTGGCCCATTTTCTAAACGGGCCTTGTT
44144722 TTTTGGCCAAACCCATATTTTGGGCCTATATTTTTACCCGAAACCTCCCATATTTCAGGCGGGCC
196 TTTTGGCCAAACCCATATTTTGGGCCTATATTTTTACCCGAAACCTCCCATATTTCAGGCGGGCC
44144787 GTCGAGTCGGGTTGGGCCGCCCGGCCCATGGACACCTCTATGTTAGAGTATGCCCAAAGATCAAT
261 GTCGAGTCGGGTTGGGCCGCCCGGCCCATGGACACCTCTATGTTAGAGTATGCCCAAAGATCAAT
44144852 CATGAGATGGTTGTAATAACATACTTGATTTATCATGTTTATTATTATAAGGCCTTACCATTATT
326 CATGAGATGGTTGTAATAACATACTTGATTTATCATGTTTATTATTATAAGGCCTTACCATTATT
44144917 ATTTCAGTTTCTTTTCTATGTGTATAAATAAACTGTTTATAATAATGTCCTGAGAATAATATGGT
391 ATTTCAGTTTCTTTTCTATGTGTATAAATAAACTGTTTATAATAATGTCCTGAGAATAATATGGT
44144982 TATTCTTAAAAGGTCCTTAGTCAAGTATTATTGTTGGCTAGGACAACAATAATGCATTAAGACTA
456 TATTCTTAAAAGGTCCTTAGTCAAGTATTATTGTTGGCTAGGACAACAATAATGCATTAAGACTA
44145047 AAATGTAGTTGATTGATGATAAAGAGTTGTCATTGATATGGAATGTCAAAATCGATGCATGAATA
521 AAATGTAGTTGATTGATGATAAAGAGTTGTCATTGATATGGAATGTCAAAATCGATGCATGAATA
44145112 TGCGTGTTAGAGAACAACATATTGGACTGACCCGTTATGAGTATGTTTCTTGGATTATTATGTAA
586 TGCGTGTTAGAGAACAACATATTGGACTGACCCGTTATGAGTATGTTTCTTGGATTATTATGTAA
44145177 TTTTCACAACATTACTCATAGTGATTAATATGTATATGATCCTCAGACTTGAGATCATCATACTC
651 TTTTCACAACATTACTCATAGTGATTAATATGTATATGATCCTCAGACTTGAGATCATCATACTC
44145242 CCAACATCGTGAGTTGTATATTTTGATACAGCCAAACATACACTGTAACTGGTTGTTCTATAAAG
716 CCAACATCGTGAGTTGTATATTTTGATACAGCCAAACATACACTGTAACTGGTTGTTCTATAAAG
44145307 GCTGATGTTGGATATACCATGATCTATG
781 GCTGATGTTGGATATACCATGATCTATG
44145335 TGCGTTTCCACACCCCCAAACTTAATTCATTGCTCGTCCTGAGTAATGTACAAATTAAAAAGAAT
1 TGCGTTTCCACACCCCCAAACTTAATTCATTGCTCGTCCTGAGTAATGTACAAATTAAAAAGAAT
44145400 TACTCAAAAAACACCTTTGAATAATTTCTTCAAAATAACATTCTTCCAAGAATTATGAATTTAAT
66 TACTCAAAAAACACCTTTGAATAATTTCTTCAAAATAACATTCTTCCAAGAATTATGAATTTAAT
44145465 ATACTTATGCTCAAAAACAAAAAGTGGTGCCCGAGGCCTGGCCCATTTTCTAAACGGGCCTTGTT
131 ATACTTATGCTCAAAAACAAAAAGTGGTGCCCGAGGCCTGGCCCATTTTCTAAACGGGCCTTGTT
44145530 TTTTGGCCAAACCCATATTTTGGGCCTATATTTTTACCCGAAACCTCCCATATTTCAGGCGGGCC
196 TTTTGGCCAAACCCATATTTTGGGCCTATATTTTTACCCGAAACCTCCCATATTTCAGGCGGGCC
44145595 GTCGAGTCGGGTTGGGCCGCCCGGCCCATGGACACCTCTATGTTAGAGTATGCCCAAAGATCAAT
261 GTCGAGTCGGGTTGGGCCGCCCGGCCCATGGACACCTCTATGTTAGAGTATGCCCAAAGATCAAT
44145660 CATGAGATGGTTGTAATAACATACTTGATTTATCATGTTTATTATTATAAGGCCTTACCATTATT
326 CATGAGATGGTTGTAATAACATACTTGATTTATCATGTTTATTATTATAAGGCCTTACCATTATT
44145725 ATTTCAGTTTCTTTTCTATGTGTATAAATAAACTGTTTATAATAATGTCCTGAGAATAATATGGT
391 ATTTCAGTTTCTTTTCTATGTGTATAAATAAACTGTTTATAATAATGTCCTGAGAATAATATGGT
44145790 TATTCTTAAAAGGTCCTTAGTCAAGTATTATTGTTGGCTAGGACAACAATAATGCATTAAGACTA
456 TATTCTTAAAAGGTCCTTAGTCAAGTATTATTGTTGGCTAGGACAACAATAATGCATTAAGACTA
44145855 AAATGTAGTTGATTGATGATAAAGAGTTGTCATTGATATGGAATGTCAAAATCGATGCATGAATA
521 AAATGTAGTTGATTGATGATAAAGAGTTGTCATTGATATGGAATGTCAAAATCGATGCATGAATA
44145920 TGCGTGTTAGAGAACAACATATTGGACTGACCCGTTATGAGTATGTTTCTTGGATTATTATGTAA
586 TGCGTGTTAGAGAACAACATATTGGACTGACCCGTTATGAGTATGTTTCTTGGATTATTATGTAA
44145985 TTTTCACAACATTACTCATAGTGATTAATATGTATATGATCCTCAGACTTGAGATCATCATACTC
651 TTTTCACAACATTACTCATAGTGATTAATATGTATATGATCCTCAGACTTGAGATCATCATACTC
44146050 CCAACATCGTGAGTTGTATATTTTGATACAGCCAAACATACACTGTAACTGGTTGTTCTATAAAG
716 CCAACATCGTGAGTTGTATATTTTGATACAGCCAAACATACACTGTAACTGGTTGTTCTATAAAG
44146115 GCTGATGTTGGATATACCATGATCTATG
781 GCTGATGTTGGATATACCATGATCTATG
44146143 T
1 T
44146144 AGAGGGATAT
Statistics
Matches: 809, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
808 809 1.00
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (808 bp):
TGCGTTTCCACACCCCCAAACTTAATTCATTGCTCGTCCTGAGTAATGTACAAATTAAAAAGAAT
TACTCAAAAAACACCTTTGAATAATTTCTTCAAAATAACATTCTTCCAAGAATTATGAATTTAAT
ATACTTATGCTCAAAAACAAAAAGTGGTGCCCGAGGCCTGGCCCATTTTCTAAACGGGCCTTGTT
TTTTGGCCAAACCCATATTTTGGGCCTATATTTTTACCCGAAACCTCCCATATTTCAGGCGGGCC
GTCGAGTCGGGTTGGGCCGCCCGGCCCATGGACACCTCTATGTTAGAGTATGCCCAAAGATCAAT
CATGAGATGGTTGTAATAACATACTTGATTTATCATGTTTATTATTATAAGGCCTTACCATTATT
ATTTCAGTTTCTTTTCTATGTGTATAAATAAACTGTTTATAATAATGTCCTGAGAATAATATGGT
TATTCTTAAAAGGTCCTTAGTCAAGTATTATTGTTGGCTAGGACAACAATAATGCATTAAGACTA
AAATGTAGTTGATTGATGATAAAGAGTTGTCATTGATATGGAATGTCAAAATCGATGCATGAATA
TGCGTGTTAGAGAACAACATATTGGACTGACCCGTTATGAGTATGTTTCTTGGATTATTATGTAA
TTTTCACAACATTACTCATAGTGATTAATATGTATATGATCCTCAGACTTGAGATCATCATACTC
CCAACATCGTGAGTTGTATATTTTGATACAGCCAAACATACACTGTAACTGGTTGTTCTATAAAG
GCTGATGTTGGATATACCATGATCTATG
Found at i:44154251 original size:222 final size:222
Alignment explanation
Indices: 44153865--44154309 Score: 890
Period size: 222 Copynumber: 2.0 Consensus size: 222
44153855 AAAAATTCCT
44153865 AATTAACTTTATCCTAAAATAACTTAATAATATAAATAAAATAAAGTCGAGATCCCCCATTTATT
1 AATTAACTTTATCCTAAAATAACTTAATAATATAAATAAAATAAAGTCGAGATCCCCCATTTATT
44153930 TATTTGCAGATCCTTCTGAATTCGACTCATCTTTTGCTCCATTATTATTGTCTTTTCATGAATCG
66 TATTTGCAGATCCTTCTGAATTCGACTCATCTTTTGCTCCATTATTATTGTCTTTTCATGAATCG
44153995 CTTCACTCTTTTTTGATAATGGGATCCATGGTTCAAATATGTAATCTGGAAACTCAGGCACAAAA
131 CTTCACTCTTTTTTGATAATGGGATCCATGGTTCAAATATGTAATCTGGAAACTCAGGCACAAAA
44154060 ATAAATGGGTCATTGTAAATTTTCGTA
196 ATAAATGGGTCATTGTAAATTTTCGTA
44154087 AATTAACTTTATCCTAAAATAACTTAATAATATAAATAAAATAAAGTCGAGATCCCCCATTTATT
1 AATTAACTTTATCCTAAAATAACTTAATAATATAAATAAAATAAAGTCGAGATCCCCCATTTATT
44154152 TATTTGCAGATCCTTCTGAATTCGACTCATCTTTTGCTCCATTATTATTGTCTTTTCATGAATCG
66 TATTTGCAGATCCTTCTGAATTCGACTCATCTTTTGCTCCATTATTATTGTCTTTTCATGAATCG
44154217 CTTCACTCTTTTTTGATAATGGGATCCATGGTTCAAATATGTAATCTGGAAACTCAGGCACAAAA
131 CTTCACTCTTTTTTGATAATGGGATCCATGGTTCAAATATGTAATCTGGAAACTCAGGCACAAAA
44154282 ATAAATGGGTCATTGTAAATTTTCGTA
196 ATAAATGGGTCATTGTAAATTTTCGTA
44154309 A
1 A
44154310 GAGCACTTCT
Statistics
Matches: 223, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
222 223 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (222 bp):
AATTAACTTTATCCTAAAATAACTTAATAATATAAATAAAATAAAGTCGAGATCCCCCATTTATT
TATTTGCAGATCCTTCTGAATTCGACTCATCTTTTGCTCCATTATTATTGTCTTTTCATGAATCG
CTTCACTCTTTTTTGATAATGGGATCCATGGTTCAAATATGTAATCTGGAAACTCAGGCACAAAA
ATAAATGGGTCATTGTAAATTTTCGTA
Found at i:44167056 original size:32 final size:32
Alignment explanation
Indices: 44166997--44167072 Score: 109
Period size: 32 Copynumber: 2.4 Consensus size: 32
44166987 TAGAGTTTTT
* * *
44166997 CCACAAAAGC-ATCCTTTACATCTAGTACTCA
1 CCACAAAAGCTTTCCTTAACATCCAGTACTCA
*
44167028 CCACAAAAGCTTTCCTTAATATCCAGTACTCA
1 CCACAAAAGCTTTCCTTAACATCCAGTACTCA
44167060 CCACAAAAGCTTT
1 CCACAAAAGCTTT
44167073 TGTATCTAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
31 10 0.25
32 30 0.75
ACGTcount: A:0.36, C:0.32, G:0.07, T:0.26
Consensus pattern (32 bp):
CCACAAAAGCTTTCCTTAACATCCAGTACTCA
Found at i:44167409 original size:53 final size:53
Alignment explanation
Indices: 44167317--44167476 Score: 221
Period size: 53 Copynumber: 3.0 Consensus size: 53
44167307 TTCCTTAAAT
* * *
44167317 TTCTCATATGATGCCATAACCTACTAGTTACAGTCTTACACGATATGGTCTTC
1 TTCTCATATGATGCCATAACCCACCAGTTACGGTCTTACACGATATGGTCTTC
* *
44167370 TTCTCATATGATGCCATAACCCACCAATTACGGTTTTACACGATATGGTCTTC
1 TTCTCATATGATGCCATAACCCACCAGTTACGGTCTTACACGATATGGTCTTC
* * * * *
44167423 TTCTTATACGATGTCATAACCCACCAGTTACGGTCTAACATGATATGGTTCTTC
1 TTCTCATATGATGCCATAACCCACCAGTTACGGTCTTACACGATATGG-TCTTC
44167477 AGTGCCATGG
Statistics
Matches: 94, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
53 89 0.95
54 5 0.05
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (53 bp):
TTCTCATATGATGCCATAACCCACCAGTTACGGTCTTACACGATATGGTCTTC
Found at i:44185900 original size:112 final size:112
Alignment explanation
Indices: 44185703--44185925 Score: 437
Period size: 112 Copynumber: 2.0 Consensus size: 112
44185693 AGAAAGAAGA
44185703 TTTCCTTTCTTTACAATTTGGTCCTCCCACCAAAAATTCACCATTTTCACTTAGAAATCAAAGAA
1 TTTCCTTTCTTTACAATTTGGTCCTCCCACCAAAAATTCACCATTTTCACTTAGAAATCAAAGAA
*
44185768 ATTTTCATAGCCACCAAGAGAGAAAATTGATAATGAGACAATGGGGT
66 ATTTTCATAACCACCAAGAGAGAAAATTGATAATGAGACAATGGGGT
44185815 TTTCCTTTCTTTACAATTTGGTCCTCCCACCAAAAATTCACCATTTTCACTTAGAAATCAAAGAA
1 TTTCCTTTCTTTACAATTTGGTCCTCCCACCAAAAATTCACCATTTTCACTTAGAAATCAAAGAA
44185880 ATTTTCATAACCACCAAGAGAGAAAATTGATAATGAGACAATGGGG
66 ATTTTCATAACCACCAAGAGAGAAAATTGATAATGAGACAATGGGG
44185926 AGCTAGAATA
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
112 110 1.00
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (112 bp):
TTTCCTTTCTTTACAATTTGGTCCTCCCACCAAAAATTCACCATTTTCACTTAGAAATCAAAGAA
ATTTTCATAACCACCAAGAGAGAAAATTGATAATGAGACAATGGGGT
Found at i:44186380 original size:103 final size:103
Alignment explanation
Indices: 44186201--44186408 Score: 407
Period size: 103 Copynumber: 2.0 Consensus size: 103
44186191 AATCAACATT
44186201 TTTCACTAAAACAGTTTTGGATAGCAGTAGTAGGTTAACTTTGAAAAATCGCCATAAATTGTGGA
1 TTTCACTAAAACAGTTTTGGATAGCAGTAGTAGGTTAACTTTGAAAAATCGCCATAAATTGTGGA
44186266 AATCGAATTAGAGTATGAATAAAATATGGAATTAAATA
66 AATCGAATTAGAGTATGAATAAAATATGGAATTAAATA
44186304 TTTCACTAAAACAGTTTTGGATAGCAGTAGTAGGTTAACTTTGAAAAATCGCCATAAATTGTGGA
1 TTTCACTAAAACAGTTTTGGATAGCAGTAGTAGGTTAACTTTGAAAAATCGCCATAAATTGTGGA
*
44186369 AATTGAATTAGAGTATGAATAAAATATGGAATTAAATA
66 AATCGAATTAGAGTATGAATAAAATATGGAATTAAATA
44186407 TT
1 TT
44186409 ATTAAGTATA
Statistics
Matches: 104, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 104 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.32
Consensus pattern (103 bp):
TTTCACTAAAACAGTTTTGGATAGCAGTAGTAGGTTAACTTTGAAAAATCGCCATAAATTGTGGA
AATCGAATTAGAGTATGAATAAAATATGGAATTAAATA
Found at i:44187979 original size:42 final size:41
Alignment explanation
Indices: 44187911--44187991 Score: 108
Period size: 42 Copynumber: 2.0 Consensus size: 41
44187901 ATGTGATTTA
* *
44187911 CGTATAAGACCATATCTGGGATATGGCATCGGCATGCGATCT
1 CGTATAAGACCATATCTGGGACATGGCATCGACAT-CGATCT
* * *
44187953 CGTATAAGACCATGTTTGGTACATGGCATCGACATCGAT
1 CGTATAAGACCATATCTGGGACATGGCATCGACATCGAT
44187992 ATGTGAGCCA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
41 4 0.12
42 30 0.88
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (41 bp):
CGTATAAGACCATATCTGGGACATGGCATCGACATCGATCT
Found at i:44188121 original size:50 final size:50
Alignment explanation
Indices: 44188046--44188358 Score: 270
Period size: 50 Copynumber: 5.9 Consensus size: 50
44188036 TATTGAAATT
* * *
44188046 ATGAGAGGTCTCATGTAAGACCATGTCTGGAACATGGCTTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
* * *
44188096 ATGAGAGATCCCATATAAGACCATGTCTGGGACATGGCGTTGGCATCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
44188146 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
*
44188196 ATGAGAGGTTGGCACCGA-GATGAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
1 ATGAGAGG-T--C-CC-ATG-T-A-A-GAC-CA----------TGTCTGGGACATGGCGTTGGCA
44188260 CCGAG
46 CCGAG
* ** * * *
44188265 ATGAGAGGTCCC-CGTAAGACCATGAATGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
** * * *
44188314 ATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
44188359 GTATAGGAAA
Statistics
Matches: 217, Mismatches: 24, Indels: 44
0.76 0.08 0.15
Matches are distributed among these distances:
49 32 0.15
50 125 0.58
51 1 0.00
53 1 0.00
54 3 0.01
55 2 0.01
56 1 0.00
57 1 0.00
58 2 0.01
59 4 0.02
60 2 0.01
61 1 0.00
62 1 0.00
63 1 0.00
64 1 0.00
65 2 0.01
66 1 0.00
68 1 0.00
69 35 0.16
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
Found at i:44188140 original size:106 final size:100
Alignment explanation
Indices: 44188005--44188202 Score: 279
Period size: 100 Copynumber: 1.9 Consensus size: 100
44187995 TGAGCCACTG
* * *
44188005 TAAGACCATGTCTGGGAAATGGCATTGGCATTATTGAAATTATGAGAGGTCTCATGTAAGACCAT
1 TAAGACCATGTCTGGGAAATGGCATTGGC---ATCG--A-GATGAGAGGTCCCATGTAAGACCAT
*
44188070 GTCTGGAACATGGCTTTGGCACCGAGATGAGAGATCCCATA
60 GTCTGGAACATGGCGTTGGCACCGAGATGAGAGATCCCATA
* *
44188111 TAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCCATGTAAGACCATGTCTGG
1 TAAGACCATGTCTGGGAAATGGCATTGGCATCGAGATGAGAGGTCCCATGTAAGACCATGTCTGG
*
44188176 GACATGGCGTTGGCACCGAGATGAGAG
66 AACATGGCGTTGGCACCGAGATGAGAG
44188203 GTTGGCACCG
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
100 54 0.64
101 1 0.01
103 3 0.04
106 27 0.32
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (100 bp):
TAAGACCATGTCTGGGAAATGGCATTGGCATCGAGATGAGAGGTCCCATGTAAGACCATGTCTGG
AACATGGCGTTGGCACCGAGATGAGAGATCCCATA
Found at i:44188208 original size:19 final size:19
Alignment explanation
Indices: 44188184--44188223 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
44188174 GGGACATGGC
44188184 GTTGGCACCGAGATGAGAG
1 GTTGGCACCGAGATGAGAG
44188203 GTTGGCACCGAGATGAGAG
1 GTTGGCACCGAGATGAGAG
44188222 GT
1 GT
44188224 CTCATGTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.42, T:0.17
Consensus pattern (19 bp):
GTTGGCACCGAGATGAGAG
Found at i:44188245 original size:69 final size:69
Alignment explanation
Indices: 44188134--44188273 Score: 262
Period size: 69 Copynumber: 2.0 Consensus size: 69
44188124 GGGACATGGC
*
44188134 GTTGGCATCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 GTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
44188199 AGAG
66 AGAG
*
44188203 GTTGGCACCGAGATGAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 GTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
44188268 AGAG
66 AGAG
44188272 GT
1 GT
44188274 CCCCGTAAGA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.24, C:0.19, G:0.36, T:0.21
Consensus pattern (69 bp):
GTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
AGAG
Found at i:44188301 original size:49 final size:49
Alignment explanation
Indices: 44188203--44188337 Score: 171
Period size: 49 Copynumber: 2.7 Consensus size: 49
44188193 GAGATGAGAG
* **
44188203 GTTGGCACCGAGATGAGAGGTCTCATGTAAGACCATGTCTGGGACATGGC
1 GTTGGCACCGAGATGAGAGGTC-CCTGTAAGACCATGAATGGGACATGGC
*
44188253 GTTGGCACCGAGATGAGAGGTCCCCGTAAGACCATGAATGGGACATGGC
1 GTTGGCACCGAGATGAGAGGTCCCTGTAAGACCATGAATGGGACATGGC
* * * **
44188302 ATGGGCACCGATATGAGAACTCCCATGTAAGACCAT
1 GTTGGCACCGAGATGAGAGGTCCC-TGTAAGACCAT
44188338 ATCTGGGATA
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 42 0.57
50 32 0.43
ACGTcount: A:0.27, C:0.22, G:0.31, T:0.19
Consensus pattern (49 bp):
GTTGGCACCGAGATGAGAGGTCCCTGTAAGACCATGAATGGGACATGGC
Found at i:44193652 original size:43 final size:43
Alignment explanation
Indices: 44193583--44193680 Score: 160
Period size: 43 Copynumber: 2.3 Consensus size: 43
44193573 TCTGCTAAAG
* * *
44193583 TTAGTGGCGTTTGTGGGGAAAGCGCCGCTAAAGGTCATGTTCT
1 TTAGCGGCGTTTGTGGGGAAAACGCCGCTAAAGGTCATATTCT
44193626 TTAGCGGCGTTTGTGGGGAAAACGCCGCTAAAGGTCATATTCT
1 TTAGCGGCGTTTGTGGGGAAAACGCCGCTAAAGGTCATATTCT
*
44193669 ATAGCGGCGTTT
1 TTAGCGGCGTTT
44193681 TTTCACATAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (43 bp):
TTAGCGGCGTTTGTGGGGAAAACGCCGCTAAAGGTCATATTCT
Found at i:44197204 original size:20 final size:20
Alignment explanation
Indices: 44197139--44197208 Score: 56
Period size: 19 Copynumber: 3.5 Consensus size: 20
44197129 TAATTAAATT
44197139 AATTTATTTTTGAACATTAA
1 AATTTATTTTTGAACATTAA
* * **
44197159 AA-TAAATTAAGAA-ATTCTAGA
1 AATTTATTTTTGAACA-T-TA-A
44197180 AATTTATTTTTGAACATTAA
1 AATTTATTTTTGAACATTAA
44197200 AATTT-TTTT
1 AATTTATTTT
44197209 CCGAATCAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 11
0.66 0.14 0.20
Matches are distributed among these distances:
18 1 0.03
19 12 0.32
20 10 0.27
21 5 0.14
22 8 0.22
23 1 0.03
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (20 bp):
AATTTATTTTTGAACATTAA
Found at i:44201587 original size:94 final size:94
Alignment explanation
Indices: 44201426--44201615 Score: 335
Period size: 94 Copynumber: 2.0 Consensus size: 94
44201416 TCATTCTTAA
* *
44201426 ACCTGTTTAACCAGATTTCTATTTCACAGGATTATGTATTCATGCATAAATTAAACATGTCATAA
1 ACCTGTTTAACCAGAATTCTATTTCACAGGACTATGTATTCATGCATAAATTAAACATGTCATAA
* *
44201491 AGACATACACTACAAGTTACTGCACTATT
66 AGACATAAACTACAAGTTACAGCACTATT
44201520 ACCTGTTTAACCAGAATTCTATTTCACAGGACTATGTATTCATGCATAAATTAAACATGTCATAA
1 ACCTGTTTAACCAGAATTCTATTTCACAGGACTATGTATTCATGCATAAATTAAACATGTCATAA
*
44201585 AGACATAAACTACACGTTACAGCACTATT
66 AGACATAAACTACAAGTTACAGCACTATT
44201614 AC
1 AC
44201616 TTGGCAATTT
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 91 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (94 bp):
ACCTGTTTAACCAGAATTCTATTTCACAGGACTATGTATTCATGCATAAATTAAACATGTCATAA
AGACATAAACTACAAGTTACAGCACTATT
Found at i:44203522 original size:4 final size:4
Alignment explanation
Indices: 44203504--44203538 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
44203494 ACAGATTTAC
*
44203504 TATT TATA T-TT TATT TATT TATT TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT
44203539 ATACGTACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 2 0.07
4 26 0.93
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:44204871 original size:20 final size:20
Alignment explanation
Indices: 44204841--44204886 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
44204831 AGACGTTGAT
44204841 GTGGCACGTTAACTACCCACG
1 GTGG-ACGTTAACTACCCACG
* *
44204862 TTGGACGTTAACTAGCCACG
1 GTGGACGTTAACTACCCACG
44204882 GTGGA
1 GTGGA
44204887 AACCCAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 19 0.86
21 3 0.14
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (20 bp):
GTGGACGTTAACTACCCACG
Found at i:44204935 original size:12 final size:12
Alignment explanation
Indices: 44204918--44204942 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
44204908 TTGTTGGAAG
44204918 AAGAAGAAGAAA
1 AAGAAGAAGAAA
44204930 AAGAAGAAGAAA
1 AAGAAGAAGAAA
44204942 A
1 A
44204943 GAAATGGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAGAAGAAGAAA
Found at i:44206133 original size:23 final size:21
Alignment explanation
Indices: 44206083--44206138 Score: 51
Period size: 24 Copynumber: 2.5 Consensus size: 21
44206073 CTTTCAAGGG
*
44206083 ACCTAATCATCATTCAAATAC
1 ACCTAATCATCATTCAAACAC
*
44206104 ACATAATCATGCCATTTCAAACA-
1 ACCTAATCAT--CA-TTCAAACAC
44206127 ACCTAATTCATC
1 ACCTAA-TCATC
44206139 TCACCAATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
21 9 0.32
22 1 0.04
23 7 0.25
24 11 0.39
ACGTcount: A:0.41, C:0.29, G:0.02, T:0.29
Consensus pattern (21 bp):
ACCTAATCATCATTCAAACAC
Found at i:44206737 original size:40 final size:40
Alignment explanation
Indices: 44206653--44206851 Score: 222
Period size: 40 Copynumber: 5.0 Consensus size: 40
44206643 TATTTGATTT
* * * *
44206653 AGGGTTACCAAAGTATAAACA-GGGCA-GTATGTGCGTTC
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATTC
* * *
44206691 GGGGGTACCCAAGTACAAACAGGGGCACGTTTGTGCATTC
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATTC
** * *
44206731 AGGGGTATTGAAGTACAAATAGGGGCACGTATGTGCATTT
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATTC
* *
44206771 AGGGGTATCGAAGTACAAACAGGGGCACGTATGTGCATTT
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATTC
* * ** *
44206811 AGGGGTACCGAACTACAAATAAAGGCATGTATGTGCATTC
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATTC
44206851 A
1 A
44206852 TAAATAATTA
Statistics
Matches: 137, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
38 17 0.12
39 5 0.04
40 115 0.84
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (40 bp):
AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATTC
Found at i:44206773 original size:20 final size:20
Alignment explanation
Indices: 44206750--44206815 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
44206740 GAAGTACAAA
44206750 TAGGGGCACGTATGTGCATT
1 TAGGGGCACGTATGTGCATT
* * * **
44206770 TAGGGGTATCG-AAGTACAAA
1 TAGGGGCA-CGTATGTGCATT
*
44206790 CAGGGGCACGTATGTGCATT
1 TAGGGGCACGTATGTGCATT
44206810 TAGGGG
1 TAGGGG
44206816 TACCGAACTA
Statistics
Matches: 32, Mismatches: 12, Indels: 4
0.67 0.25 0.08
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.26, C:0.14, G:0.36, T:0.24
Consensus pattern (20 bp):
TAGGGGCACGTATGTGCATT
Found at i:44207714 original size:13 final size:14
Alignment explanation
Indices: 44207685--44207714 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
44207675 TCATCTAACT
44207685 ATTTAATTACTTAA
1 ATTTAATTACTTAA
44207699 ATTTAATTAC-TAA
1 ATTTAATTACTTAA
44207712 ATT
1 ATT
44207715 ACAATTTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTTAATTACTTAA
Found at i:44209079 original size:17 final size:16
Alignment explanation
Indices: 44209057--44209098 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
44209047 TATTAAAAGA
44209057 TATTAAAAATAATGATT
1 TATTAAAAA-AATGATT
44209074 TATT-AAAAAATGATT
1 TATTAAAAAAATGATT
44209089 TATTTAAAAA
1 TA-TTAAAAA
44209099 GAATTTGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 9 0.39
16 6 0.26
17 8 0.35
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (16 bp):
TATTAAAAAAATGATT
Found at i:44209104 original size:15 final size:15
Alignment explanation
Indices: 44209057--44209098 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 15
44209047 TATTAAAAGA
44209057 TATTAAAAATAATGATT
1 TATT-AAAA-AATGATT
44209074 TATTAAAAAATGATT
1 TATTAAAAAATGATT
44209089 TATTTAAAAA
1 TA-TTAAAAA
44209099 GAATTTGGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.38
16 11 0.46
17 4 0.17
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (15 bp):
TATTAAAAAATGATT
Found at i:44209320 original size:28 final size:29
Alignment explanation
Indices: 44209270--44209327 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
44209260 TAAAATACGG
*
44209270 ACTAAAATAATAATTTATTACATT-TTAA
1 ACTAAAATAATAATTTATAACATTATTAA
*
44209298 ACTATAATAATAAATTTA-AACATTATTAA
1 ACTAAAATAAT-AATTTATAACATTATTAA
44209327 A
1 A
44209328 ATTAAATACT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 15 0.58
29 11 0.42
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (29 bp):
ACTAAAATAATAATTTATAACATTATTAA
Found at i:44210543 original size:14 final size:16
Alignment explanation
Indices: 44210508--44210545 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 16
44210498 AAATGGACTA
44210508 TTTTTTATTTGTTGTT
1 TTTTTTATTTGTTGTT
44210524 TGTTTTTATTTG-TGTT
1 T-TTTTTATTTGTTGTT
44210540 TTTTTT
1 TTTTTT
44210546 GTTTATTTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.24
16 6 0.29
17 10 0.48
ACGTcount: A:0.05, C:0.00, G:0.13, T:0.82
Consensus pattern (16 bp):
TTTTTTATTTGTTGTT
Found at i:44210856 original size:44 final size:44
Alignment explanation
Indices: 44210794--44211091 Score: 160
Period size: 44 Copynumber: 6.5 Consensus size: 44
44210784 GATCTACTCT
* * **
44210794 ACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCC
1 ACTGTAATC-TCAGGGAGATAAGATACTTGCTTTTAATTCGCTCC
* *
44210838 ACTGTAATCTCAGGGAGATAGGATTACTAGCTTTT-A-TCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGA-TACTTGCTTTTAATTC-GCTCC
* * * * * *
44210882 GCTGTAATCTCAGGGAGATAGGATTACTGGC-TTCAATTTGCTCT
1 ACTGTAATCTCAGGGAGATAAGA-TACTTGCTTTTAATTCGCTCC
* ** * *
44210926 GCTGTAATCTCAGGGAGATAAGATTTTTGGCTTCAATCTGATGCGATCTACTC
1 ACTGTAATCTCAGGGAGATAAGATACTT-GCTT---T-TAATTCG--CT-C-C
* * ** *
44210979 TACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCC
1 -ACTGTAATC-TCAGGGAGATAAGATACTTGCTTTTAATTCGCTCC
* * *
44211024 ACTGTAATCTCAGGGAGATAGGATTACTAGCTTCT-A-TCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGA-TACTTGCTTTTAATTC-GCTCC
*
44211068 GCTGTAATCTCAGGGAGATAAGAT
1 ACTGTAATCTCAGGGAGATAAGAT
44211092 TTGTGGCTTA
Statistics
Matches: 196, Mismatches: 38, Indels: 41
0.71 0.14 0.15
Matches are distributed among these distances:
43 8 0.04
44 129 0.66
45 18 0.09
46 1 0.01
47 2 0.01
48 1 0.01
49 8 0.04
50 1 0.01
51 2 0.01
52 1 0.01
53 3 0.02
54 22 0.11
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (44 bp):
ACTGTAATCTCAGGGAGATAAGATACTTGCTTTTAATTCGCTCC
Found at i:44211107 original size:44 final size:44
Alignment explanation
Indices: 44211014--44211109 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 44
44211004 CCTTTATTTT
* * *
44211014 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTA
* * ** *
44211058 TATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTGTGGCTTA
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTA
44211102 AATCTGCT
1 AATCTGCT
44211110 TCCTTACACT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTA
Found at i:44222596 original size:16 final size:15
Alignment explanation
Indices: 44222563--44222604 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
44222553 AAAGATATAA
44222563 AAAATAATGAATTATT
1 AAAA-AATGAATTATT
*
44222579 AAAAAATGATTTATT
1 AAAAAATGAATTATT
*
44222594 TAAAAA-GAATT
1 AAAAAATGAATT
44222605 TGGAAGCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 4 0.17
15 15 0.65
16 4 0.17
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (15 bp):
AAAAAATGAATTATT
Found at i:44222805 original size:25 final size:25
Alignment explanation
Indices: 44222777--44222863 Score: 66
Period size: 25 Copynumber: 3.3 Consensus size: 25
44222767 ACGGACTAAA
44222777 ATAATAATTTATTACATTTTAAACT
1 ATAATAATTTATTACATTTTAAACT
** * * ****
44222802 ATAATAATAAATATAAAATACGGACT
1 ATAATAATTTAT-TACATTTTAAACT
44222828 AAAATAATAATTTATTACATTTTAAACT
1 --A-TAATAATTTATTACATTTTAAACT
44222856 ATAATAAT
1 ATAATAAT
44222864 AATAAATTTA
Statistics
Matches: 42, Mismatches: 16, Indels: 8
0.64 0.24 0.12
Matches are distributed among these distances:
25 17 0.40
26 8 0.19
28 8 0.19
29 9 0.21
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.39
Consensus pattern (25 bp):
ATAATAATTTATTACATTTTAAACT
Found at i:44222811 original size:28 final size:28
Alignment explanation
Indices: 44222771--44222866 Score: 97
Period size: 28 Copynumber: 3.5 Consensus size: 28
44222761 TAAAATACGG
44222771 ACTAAAATAATAATTTATTACATTTTAA
1 ACTAAAATAATAATTTATTACATTTTAA
* * * * ****
44222799 ACTATAATAATAA-ATA-TAAAATACGG
1 ACTAAAATAATAATTTATTACATTTTAA
44222825 ACTAAAATAATAATTTATTACATTTTAA
1 ACTAAAATAATAATTTATTACATTTTAA
*
44222853 ACTATAATAATAAT
1 ACTAAAATAATAAT
44222867 AAATTTAAAC
Statistics
Matches: 49, Mismatches: 17, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
26 16 0.33
27 4 0.08
28 29 0.59
ACGTcount: A:0.53, C:0.07, G:0.02, T:0.38
Consensus pattern (28 bp):
ACTAAAATAATAATTTATTACATTTTAA
Found at i:44222870 original size:57 final size:54
Alignment explanation
Indices: 44222756--44222865 Score: 220
Period size: 54 Copynumber: 2.0 Consensus size: 54
44222746 AATGAATTTA
44222756 AAATATAAAATACGGACTAAAATAATAATTTATTACATTTTAAACTATAATAAT
1 AAATATAAAATACGGACTAAAATAATAATTTATTACATTTTAAACTATAATAAT
44222810 AAATATAAAATACGGACTAAAATAATAATTTATTACATTTTAAACTATAATAAT
1 AAATATAAAATACGGACTAAAATAATAATTTATTACATTTTAAACTATAATAAT
44222864 AA
1 AA
44222866 TAAATTTAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.35
Consensus pattern (54 bp):
AAATATAAAATACGGACTAAAATAATAATTTATTACATTTTAAACTATAATAAT
Found at i:44229305 original size:54 final size:54
Alignment explanation
Indices: 44229211--44229333 Score: 135
Period size: 54 Copynumber: 2.3 Consensus size: 54
44229201 CTGTGTCACC
* * * *
44229211 CGTGTAACTCACTGAGTAGCCCTACACGCCCATGTTTCAGG-CCGTGTGCTAGG-
1 CGTGTAACTCACTGAGTAGCACTACACACCCATGTGTCAGGTCC-TATGCTAGGT
* * *
44229264 CTGTGTAACTCTCTGAGTTGTCAC-ACACACCCGTGTGTCAGGTCCTATGCTAGGT
1 C-GTGTAACTCACTGAGTAG-CACTACACACCCATGTGTCAGGTCCTATGCTAGGT
44229319 CGTGTAACTCACTGA
1 CGTGTAACTCACTGA
44229334 CTTGAACACT
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
53 1 0.02
54 52 0.90
55 5 0.09
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (54 bp):
CGTGTAACTCACTGAGTAGCACTACACACCCATGTGTCAGGTCCTATGCTAGGT
Found at i:44231195 original size:35 final size:35
Alignment explanation
Indices: 44231156--44231317 Score: 184
Period size: 35 Copynumber: 4.6 Consensus size: 35
44231146 ACTCTATGTT
* *
44231156 TTGGTGTGTTTCGGATGGATTAGATC-TGATGAGCA
1 TTGGTGTGTTTTGGATGGATTAGCTCAT-ATGAGCA
** * *
44231191 TTGGTGTGTTTCAGATGGTTTAGCTCATATAAGCA
1 TTGGTGTGTTTTGGATGGATTAGCTCATATGAGCA
* *
44231226 TTAGTGTGTTTTGGATGG-TCTAGCTCATATGGGCA
1 TTGGTGTGTTTTGGATGGAT-TAGCTCATATGAGCA
* *
44231261 TTGGTGTGTTTTGAATGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTTTGGATGGATTAGCTCATATGAGCA
*
44231296 TCTGGTGTGTTTTGGTTGGATT
1 T-TGGTGTGTTTTGGATGGATT
44231318 CTTGATGTAC
Statistics
Matches: 108, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
34 1 0.01
35 87 0.81
36 20 0.19
ACGTcount: A:0.18, C:0.09, G:0.31, T:0.42
Consensus pattern (35 bp):
TTGGTGTGTTTTGGATGGATTAGCTCATATGAGCA
Found at i:44238682 original size:35 final size:35
Alignment explanation
Indices: 44238630--44238746 Score: 144
Period size: 35 Copynumber: 3.3 Consensus size: 35
44238620 ACTCTCTGTT
* *
44238630 TTGGTGTGTTTCGGATGGTTTAGCTCGTATGAGCA
1 TTGGTATGTTTCGGATGGTTTAGCTCATATGAGCA
* *
44238665 TGGGTATGTTTCAGATGGTTTAGCTCATATGAGCA
1 TTGGTATGTTTCGGATGGTTTAGCTCATATGAGCA
* * ** *
44238700 TTGGTTTATTTCGGATGGAGTAGCTCTTATGAGCA
1 TTGGTATGTTTCGGATGGTTTAGCTCATATGAGCA
44238735 TTTGGTATGTTT
1 -TTGGTATGTTT
44238747 TGGTTGGATT
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
35 59 0.87
36 9 0.13
ACGTcount: A:0.18, C:0.10, G:0.30, T:0.42
Consensus pattern (35 bp):
TTGGTATGTTTCGGATGGTTTAGCTCATATGAGCA
Found at i:44240427 original size:40 final size:39
Alignment explanation
Indices: 44240340--44240462 Score: 133
Period size: 40 Copynumber: 3.1 Consensus size: 39
44240330 CGTATGTACG
* * *
44240340 TTCAGGGGTA-TCGAAGTATAAACTGGGGCACGTGTTGCA
1 TTCAGGGGTACT-GAAGTACAAACAGGGGCACGTATTGCA
* *
44240379 TTCAGGGGTACTGAAGTACAAACAGGGGAACGTATCTGCT
1 TTCAGGGGTACTGAAGTACAAACAGGGGCACGTAT-TGCA
* *
44240419 TTCAGGGGTAGC-GAAGTGCAAATAGGGGCACGTATGTGCA
1 TTCAGGGGTA-CTGAAGTACAAACAGGGGCACGTAT-TGCA
44240459 TTCA
1 TTCA
44240463 TCAATAATTA
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
39 29 0.41
40 41 0.58
41 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.24
Consensus pattern (39 bp):
TTCAGGGGTACTGAAGTACAAACAGGGGCACGTATTGCA
Found at i:44242347 original size:16 final size:16
Alignment explanation
Indices: 44242313--44242363 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
44242303 ACAAAATTTA
44242313 AATTTAATAAT-TAAAT
1 AATTTAATAATAT-AAT
*
44242329 AA-TTATATAATATAGT
1 AATTTA-ATAATATAAT
44242345 AATTTAATAATATAAT
1 AATTTAATAATATAAT
44242361 AAT
1 AAT
44242364 CCAAATATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 3 0.10
16 23 0.77
17 4 0.13
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (16 bp):
AATTTAATAATATAAT
Found at i:44248585 original size:21 final size:21
Alignment explanation
Indices: 44248540--44248586 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
44248530 TCTAAATTCT
**
44248540 AAAAATTCAAAACAATGAATC
1 AAAAATTCAAAACAATGAAAA
44248561 AAAAATTCAAAA-AATAGAAAA
1 AAAAATTCAAAACAAT-GAAAA
44248582 AAAAA
1 AAAAA
44248587 ATTAGCTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.72, C:0.09, G:0.04, T:0.15
Consensus pattern (21 bp):
AAAAATTCAAAACAATGAAAA
Found at i:44248841 original size:14 final size:15
Alignment explanation
Indices: 44248810--44248846 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
44248800 AAGTCAATGA
*
44248810 TATTTTTAAAATATT
1 TATTTTTTAAATATT
44248825 TATTTTTTAAATA-T
1 TATTTTTTAAATATT
44248839 TATTTTTT
1 TATTTTTT
44248847 GAATTTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTTTTTAAATATT
Found at i:44248875 original size:21 final size:20
Alignment explanation
Indices: 44248829--44248866 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
44248819 AATATTTATT
44248829 TTTTAAATATTATTTTTTGA
1 TTTTAAATATTATTTTTTGA
*
44248849 ATTTAAAT-TTACTTTTTT
1 TTTTAAATATTA-TTTTTT
44248867 TACTTTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (20 bp):
TTTTAAATATTATTTTTTGA
Found at i:44250383 original size:87 final size:87
Alignment explanation
Indices: 44250284--44250458 Score: 332
Period size: 87 Copynumber: 2.0 Consensus size: 87
44250274 CTACGGCCCT
* *
44250284 TAGCGCCCCCTCCCCCACCACAACAACCACTGCGCACCACCACACAACTCTTTTCTTTTTCTTAT
1 TAGCGCCACCTCCACCACCACAACAACCACTGCGCACCACCACACAACTCTTTTCTTTTTCTTAT
44250349 TTTTCTCTCTTCTCCTTTCTCC
66 TTTTCTCTCTTCTCCTTTCTCC
44250371 TAGCGCCACCTCCACCACCACAACAACCACTGCGCACCACCACACAACTCTTTTCTTTTTCTTAT
1 TAGCGCCACCTCCACCACCACAACAACCACTGCGCACCACCACACAACTCTTTTCTTTTTCTTAT
44250436 TTTTCTCTCTTCTCCTTTCTCC
66 TTTTCTCTCTTCTCCTTTCTCC
44250458 T
1 T
44250459 CTTTTAAGTG
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.18, C:0.43, G:0.05, T:0.34
Consensus pattern (87 bp):
TAGCGCCACCTCCACCACCACAACAACCACTGCGCACCACCACACAACTCTTTTCTTTTTCTTAT
TTTTCTCTCTTCTCCTTTCTCC
Found at i:44251516 original size:20 final size:20
Alignment explanation
Indices: 44251491--44251530 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
44251481 CTCACATGAC
*
44251491 AAAGTGAAAAATTGATTTTT
1 AAAGTGAAAAAGTGATTTTT
44251511 AAAGTGAAAAAGTGATTTTT
1 AAAGTGAAAAAGTGATTTTT
44251531 GTGGCCATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.17, T:0.38
Consensus pattern (20 bp):
AAAGTGAAAAAGTGATTTTT
Found at i:44251627 original size:47 final size:46
Alignment explanation
Indices: 44251576--44251734 Score: 201
Period size: 47 Copynumber: 3.4 Consensus size: 46
44251566 AAGGAGGAAG
* *
44251576 AAGTGGCAGTTTATTTGCAAAAGTGGTGGCTTGTCCATAATATTAT
1 AAGTGACAGTTTATCTGCAAAAGTGGTGGCTTGTCCATAATATTAT
* * * * * *
44251622 AAAGTGGCAATTTATCTACAAAAGTGGTGGCTTTTCCACAATGTTATT
1 -AAGTGACAGTTTATCTGCAAAAGTGGTGGCTTGTCCATAATATTA-T
* * *
44251670 AACTGACAGTTTATCTGTAAAAGTGGTGGTTTGTCCATAATATTAT
1 AAGTGACAGTTTATCTGCAAAAGTGGTGGCTTGTCCATAATATTAT
44251716 AAGTGACAGTTTATCTGCA
1 AAGTGACAGTTTATCTGCA
44251735 TTACTGTGAC
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
46 18 0.19
47 75 0.80
48 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (46 bp):
AAGTGACAGTTTATCTGCAAAAGTGGTGGCTTGTCCATAATATTAT
Found at i:44252071 original size:77 final size:77
Alignment explanation
Indices: 44251944--44252098 Score: 292
Period size: 77 Copynumber: 2.0 Consensus size: 77
44251934 TAAAAGACCC
* *
44251944 ACACCGTGCTTTAAAGGCTCACCCCTTTAGTGTTATAGCCTTTCAGGTAATACGCAGACATAAGG
1 ACACCGGGCTTTAAAAGCTCACCCCTTTAGTGTTATAGCCTTTCAGGTAATACGCAGACATAAGG
44252009 CTTGGATTCAAT
66 CTTGGATTCAAT
44252021 ACACCGGGCTTTAAAAGCTCACCCCTTTAGTGTTATAGCCTTTCAGGTAATACGCAGACATAAGG
1 ACACCGGGCTTTAAAAGCTCACCCCTTTAGTGTTATAGCCTTTCAGGTAATACGCAGACATAAGG
44252086 CTTGGATTCAAT
66 CTTGGATTCAAT
44252098 A
1 A
44252099 TTCAGTGGAG
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (77 bp):
ACACCGGGCTTTAAAAGCTCACCCCTTTAGTGTTATAGCCTTTCAGGTAATACGCAGACATAAGG
CTTGGATTCAAT
Found at i:44253015 original size:77 final size:77
Alignment explanation
Indices: 44252923--44253076 Score: 299
Period size: 77 Copynumber: 2.0 Consensus size: 77
44252913 CGAACAAAAT
44252923 GATACTAAACCTCAATGTGCTGTGTTCTCTCATGAAACATTTGATATTTTGTAAGGAAGATGACA
1 GATACTAAACCTCAATGTGCTGTGTTCTCTCATGAAACATTTGATATTTTGTAAGGAAGATGACA
44252988 CTTTGACTATCA
66 CTTTGACTATCA
*
44253000 GATACTAAACCTCAATGTGCTTTGTTCTCTCATGAAACATTTGATATTTTGTAAGGAAGATGACA
1 GATACTAAACCTCAATGTGCTGTGTTCTCTCATGAAACATTTGATATTTTGTAAGGAAGATGACA
44253065 CTTTGACTATCA
66 CTTTGACTATCA
44253077 CAAAATACTG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (77 bp):
GATACTAAACCTCAATGTGCTGTGTTCTCTCATGAAACATTTGATATTTTGTAAGGAAGATGACA
CTTTGACTATCA
Found at i:44256045 original size:27 final size:27
Alignment explanation
Indices: 44255962--44256046 Score: 98
Period size: 27 Copynumber: 3.1 Consensus size: 27
44255952 CACGACAACT
44255962 AAGAATAGCCTTTGTGGCGAACTCTAAA
1 AAGAATAGCCTTTGTGGCGAACTCT-AA
* * * * **
44255990 AAGAATGGCCTCTGTGGCAAAATAAAA
1 AAGAATAGCCTTTGTGGCGAACTCTAA
*
44256017 AAGAATAGTCTTTGTGGCGAACTCTAA
1 AAGAATAGCCTTTGTGGCGAACTCTAA
44256044 AAG
1 AAG
44256047 GGATGCCTTT
Statistics
Matches: 44, Mismatches: 13, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (27 bp):
AAGAATAGCCTTTGTGGCGAACTCTAA
Found at i:44256056 original size:27 final size:28
Alignment explanation
Indices: 44255962--44256045 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
44255952 CACGACAACT
44255962 AAGAATAGCCTTTGTGGCGAACTCTAAA
1 AAGAATAGCCTTTGTGGCGAACTCTAAA
* * * * *
44255990 AAGAATGGCCTCTGTGGCAAAAT-AAAA
1 AAGAATAGCCTTTGTGGCGAACTCTAAA
*
44256017 AAGAATAGTCTTTGTGGCGAACTCTAAA
1 AAGAATAGCCTTTGTGGCGAACTCTAAA
44256045 A
1 A
44256046 GGGATGCCTT
Statistics
Matches: 44, Mismatches: 11, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
27 21 0.48
28 23 0.52
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.24
Consensus pattern (28 bp):
AAGAATAGCCTTTGTGGCGAACTCTAAA
Found at i:44265161 original size:27 final size:27
Alignment explanation
Indices: 44265123--44265177 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
44265113 TCACGGCAAC
44265123 TCAGTAATTTGCTAACTTATGAACATT
1 TCAGTAATTTGCTAACTTATGAACATT
44265150 TCAGTAATTTGCTAACTTATGAACATT
1 TCAGTAATTTGCTAACTTATGAACATT
44265177 T
1 T
44265178 TCACCTACCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.42
Consensus pattern (27 bp):
TCAGTAATTTGCTAACTTATGAACATT
Found at i:44267717 original size:16 final size:17
Alignment explanation
Indices: 44267698--44267735 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
44267688 TTTCTTTTTC
*
44267698 TTTTTCTAAACTCTC-A
1 TTTTTCTAAACGCTCAA
*
44267714 TTTTTCTCAACGCTCAA
1 TTTTTCTAAACGCTCAA
44267731 TTTTT
1 TTTTT
44267736 TTCTCTCGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.21, C:0.24, G:0.03, T:0.53
Consensus pattern (17 bp):
TTTTTCTAAACGCTCAA
Found at i:44267780 original size:18 final size:17
Alignment explanation
Indices: 44267747--44267788 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
44267737 TCTCTCGATT
44267747 TTTCT-ATTTTTCTTTC
1 TTTCTCATTTTTCTTTC
*
44267763 TTTCTCATTTTTATTTTC
1 TTTCTCATTTTT-CTTTC
*
44267781 TTTTTCAT
1 TTTCTCAT
44267789 GTTCTTTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 5 0.23
17 6 0.27
18 11 0.50
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTCTCATTTTTCTTTC
Found at i:44269894 original size:17 final size:17
Alignment explanation
Indices: 44269872--44269930 Score: 75
Period size: 16 Copynumber: 3.5 Consensus size: 17
44269862 GACTTCACTT
*
44269872 TTTTTTTAATACACGAA
1 TTTTTTTAATACTCGAA
* *
44269889 TTTTTTTTATACTTCGTA
1 TTTTTTTAATAC-TCGAA
44269907 TTTTTTTAAT-CTCGAA
1 TTTTTTTAATACTCGAA
44269923 TTTTTTTA
1 TTTTTTTA
44269931 CTTCAAATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
16 12 0.33
17 12 0.33
18 12 0.33
ACGTcount: A:0.24, C:0.10, G:0.05, T:0.61
Consensus pattern (17 bp):
TTTTTTTAATACTCGAA
Found at i:44269894 original size:18 final size:18
Alignment explanation
Indices: 44269871--44269929 Score: 70
Period size: 17 Copynumber: 3.4 Consensus size: 18
44269861 TGACTTCACT
*
44269871 TTTTTTTTAATACACGAA
1 TTTTTTTTAATACTCGAA
*
44269889 TTTTTTTT-ATACTTCGTA
1 TTTTTTTTAATAC-TCGAA
44269907 -TTTTTTTAAT-CTCGAA
1 TTTTTTTTAATACTCGAA
44269923 TTTTTTT
1 TTTTTTT
44269930 ACTTCAAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
16 4 0.11
17 18 0.51
18 13 0.37
ACGTcount: A:0.22, C:0.10, G:0.05, T:0.63
Consensus pattern (18 bp):
TTTTTTTTAATACTCGAA
Found at i:44269939 original size:15 final size:15
Alignment explanation
Indices: 44269891--44269940 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
44269881 TACACGAATT
*
44269891 TTTTTTATACTTCGTA
1 TTTTTT-TACTTCGAA
*
44269907 TTTTTTTAATCTCGAA
1 TTTTTTTACT-TCGAA
*
44269923 TTTTTTTACTTCAAA
1 TTTTTTTACTTCGAA
44269938 TTT
1 TTT
44269941 AACAATACAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 10 0.34
16 19 0.66
ACGTcount: A:0.22, C:0.12, G:0.04, T:0.62
Consensus pattern (15 bp):
TTTTTTTACTTCGAA
Found at i:44271475 original size:20 final size:20
Alignment explanation
Indices: 44271442--44271485 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
44271432 AGCTTAAACT
* *
44271442 AGCTGATTTAAGCTCAAGTG
1 AGCTGATTGAAGCTCAAATG
* *
44271462 AGCTGATTGGAGCTGAAATG
1 AGCTGATTGAAGCTCAAATG
44271482 AGCT
1 AGCT
44271486 TTGGAAGCTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.27
Consensus pattern (20 bp):
AGCTGATTGAAGCTCAAATG
Found at i:44276508 original size:73 final size:73
Alignment explanation
Indices: 44276426--44276565 Score: 253
Period size: 73 Copynumber: 1.9 Consensus size: 73
44276416 TGGCTGGTTA
*
44276426 AATTAGAGAATTTTCCTGCTCAATTGTGACGCCCCTCTGCCACCTTCTCCTCTGCTGTTCGACTC
1 AATTAGAGAATTTTCCTGCTCAATTGTGACGCCCCTCTACCACCTTCTCCTCTGCTGTTCGACTC
44276491 CCTGCTTT
66 CCTGCTTT
* *
44276499 AATTAGAGAATTTTCCTGCTCAATTGTGATGCCCCTCTACCACCTTCTTCTCTGCTGTTCGACTC
1 AATTAGAGAATTTTCCTGCTCAATTGTGACGCCCCTCTACCACCTTCTCCTCTGCTGTTCGACTC
44276564 CC
66 CC
44276566 CTTTTAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 64 1.00
ACGTcount: A:0.16, C:0.34, G:0.14, T:0.36
Consensus pattern (73 bp):
AATTAGAGAATTTTCCTGCTCAATTGTGACGCCCCTCTACCACCTTCTCCTCTGCTGTTCGACTC
CCTGCTTT
Found at i:44285606 original size:66 final size:66
Alignment explanation
Indices: 44285531--44285729 Score: 307
Period size: 66 Copynumber: 3.0 Consensus size: 66
44285521 GCAATTAAAT
44285531 TATTACGGCATAGAATGTCTCTAATCAATTTAGGCTGAATTATAACTTAATTAACCAAAAAAGTA
1 TATTACGGCATAGAATGTCTCTAATCAATTTAGGCTGAATTATAACTTAATTAACCAAAAAAGTA
44285596 A
66 A
** *
44285597 TATTACGGCATAGAATGTCTCTAATCAATTTAGGCTGAATTATAAC-TAATTGGAGTGCAATTAA
1 TATTACGGCATAGAATGTCTCTAATCAATTTAGGCTGAATTATAACTTAATT--A-ACCAA-AAA
44285661 A-T--
62 AGTAA
44285663 TATTACGGCATAGAATGTCTCTAATCAATTTAGGCTGAATTATAACTTAATTAACCAAAAAAGTA
1 TATTACGGCATAGAATGTCTCTAATCAATTTAGGCTGAATTATAACTTAATTAACCAAAAAAGTA
44285728 A
66 A
44285729 T
1 T
44285730 CAATAATTTA
Statistics
Matches: 119, Mismatches: 6, Indels: 16
0.84 0.04 0.11
Matches are distributed among these distances:
63 3 0.03
64 4 0.03
65 6 0.05
66 93 0.78
67 6 0.05
68 4 0.03
69 3 0.03
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (66 bp):
TATTACGGCATAGAATGTCTCTAATCAATTTAGGCTGAATTATAACTTAATTAACCAAAAAAGTA
A
Found at i:44286842 original size:65 final size:65
Alignment explanation
Indices: 44286761--44286882 Score: 244
Period size: 65 Copynumber: 1.9 Consensus size: 65
44286751 TAGAGAACAA
44286761 CATATTGGAATGACCCATTATGAGTATGTTTCTTGGATTATTATGTAATTGTCACGAAACATACT
1 CATATTGGAATGACCCATTATGAGTATGTTTCTTGGATTATTATGTAATTGTCACGAAACATACT
44286826 CATATTGGAATGACCCATTATGAGTATGTTTCTTGGATTATTATGTAATTGTCACGA
1 CATATTGGAATGACCCATTATGAGTATGTTTCTTGGATTATTATGTAATTGTCACGA
44286883 CATTACTCAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (65 bp):
CATATTGGAATGACCCATTATGAGTATGTTTCTTGGATTATTATGTAATTGTCACGAAACATACT
Found at i:44287510 original size:12 final size:12
Alignment explanation
Indices: 44287490--44287545 Score: 103
Period size: 12 Copynumber: 4.7 Consensus size: 12
44287480 GCTTGAATTA
44287490 AATTAATTATAG
1 AATTAATTATAG
*
44287502 AAATAATTATAG
1 AATTAATTATAG
44287514 AATTAATTATAG
1 AATTAATTATAG
44287526 AATTAATTATAG
1 AATTAATTATAG
44287538 AATTAATT
1 AATTAATT
44287546 TAATTCGGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (12 bp):
AATTAATTATAG
Found at i:44295069 original size:22 final size:20
Alignment explanation
Indices: 44295030--44295076 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
44295020 AATAAAGCTG
44295030 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
44295049 ATAATAGATATAATTATATATTA
1 ATAATA-AT-TAA-TATATATTA
44295072 ATAAT
1 ATAAT
44295077 TATCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 3 0.12
22 8 0.33
23 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Found at i:44305233 original size:21 final size:21
Alignment explanation
Indices: 44305185--44305244 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
44305175 CCACATTCAT
* *
44305185 GCTAAGGCTCAACACA-GGCC
1 GCTATGGCTCAACATAGGGCC
*
44305205 GCTATGGCTCAACATAGGGCT
1 GCTATGGCTCAACATAGGGCC
* *
44305226 GTTATGGCTCAGCATAGGG
1 GCTATGGCTCAACATAGGG
44305245 TGCGTGTTGA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 14 0.41
21 20 0.59
ACGTcount: A:0.25, C:0.25, G:0.30, T:0.20
Consensus pattern (21 bp):
GCTATGGCTCAACATAGGGCC
Found at i:44305286 original size:21 final size:21
Alignment explanation
Indices: 44305262--44305301 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
44305252 TGAAACGCAA
*
44305262 ACATTACGTGTCGCACCACAG
1 ACATTACATGTCGCACCACAG
* *
44305283 ACATTGCATGTCGCGCCAC
1 ACATTACATGTCGCACCAC
44305302 GCAAGGCATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.35, G:0.20, T:0.20
Consensus pattern (21 bp):
ACATTACATGTCGCACCACAG
Found at i:44306001 original size:34 final size:34
Alignment explanation
Indices: 44305958--44306026 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
44305948 ACAAGCGCGA
*
44305958 ACAAGACCTATTGACATGCTAATCGTATCCTAAC
1 ACAAGACCTATTGACATGCTAATCGCATCCTAAC
44305992 ACAAGACCTATTGACATGCTAATCGCATCCTAAC
1 ACAAGACCTATTGACATGCTAATCGCATCCTAAC
44306026 A
1 A
44306027 TTTACTAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.36, C:0.28, G:0.12, T:0.25
Consensus pattern (34 bp):
ACAAGACCTATTGACATGCTAATCGCATCCTAAC
Found at i:44314459 original size:16 final size:18
Alignment explanation
Indices: 44314424--44314461 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
44314414 ATTCTTATTT
*
44314424 AAATAAAATACAGTGGTA
1 AAATAAAATACAGAGGTA
44314442 AAATAAAATA-A-AGGTA
1 AAATAAAATACAGAGGTA
44314458 AAAT
1 AAAT
44314462 CCCCATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.63, C:0.03, G:0.13, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAGAGGTA
Found at i:44320802 original size:21 final size:21
Alignment explanation
Indices: 44320776--44320819 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
44320766 GAATATTTAG
*
44320776 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
44320797 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
44320818 TA
1 TA
44320820 ATTAGGTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:44321524 original size:10 final size:10
Alignment explanation
Indices: 44321509--44321536 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
44321499 GTACGACTAT
44321509 ATGATTCATA
1 ATGATTCATA
44321519 ATGATTCATA
1 ATGATTCATA
44321529 ATGATTCA
1 ATGATTCA
44321537 GCTATAGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (10 bp):
ATGATTCATA
Found at i:44324652 original size:90 final size:90
Alignment explanation
Indices: 44324492--44324655 Score: 199
Period size: 90 Copynumber: 1.8 Consensus size: 90
44324482 TACCGATGTG
* ** * *
44324492 ATGCCATAGTATCTTTCAATTATGGTCTTATCTGTATCAAATTTAATGTCATAATATCTTTCGAC
1 ATGCCATAGTATCTTTCAACTATGGTCTTATCTGTATCAAATAAAATGCCATAATATCTTTCAAC
44324557 TATGGTCTTACCCAATCCCGGTTTA
66 TATGGTCTTACCCAATCCCGGTTTA
* * * *
44324582 ATGCCATAGTATCTTTCAACTATGGTCTT-TCT-TATTTCGAGTAAAATGCCATGATATCTTTTA
1 ATGCCATAGTATCTTTCAACTATGGTCTTATCTGTA--TCAAATAAAATGCCATAATATCTTTCA
44324645 A-TCATGGTCTT
64 ACT-ATGGTCTT
44324656 TCTCATTTCT
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
88 2 0.03
89 4 0.06
90 56 0.90
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.42
Consensus pattern (90 bp):
ATGCCATAGTATCTTTCAACTATGGTCTTATCTGTATCAAATAAAATGCCATAATATCTTTCAAC
TATGGTCTTACCCAATCCCGGTTTA
Found at i:44331839 original size:27 final size:27
Alignment explanation
Indices: 44331809--44331978 Score: 173
Period size: 27 Copynumber: 6.3 Consensus size: 27
44331799 CCCTAAAATA
* *
44331809 GGTATAATGATCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
**
44331836 GGTAAAATGACCGTAATGCCCCACTCA-
1 GGTAAAATGACCGTAATGCCCCTGT-AG
* * *
44331863 GTTAAAATGACCGTAATGCCCTTGTAA
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
44331890 GGTAAAATTACTGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* **
44331917 GGTAAAATGACTGTAATATCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
44331944 GG-AGAAATGACCGTAATGCCCTTGTGG
1 GGTA-AAATGACCGTAATGCCCCTGTAG
44331971 GGTAAAAT
1 GGTAAAAT
44331979 TATTGAAATA
Statistics
Matches: 116, Mismatches: 23, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.02
27 112 0.97
28 2 0.02
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:44331952 original size:81 final size:81
Alignment explanation
Indices: 44331821--44332009 Score: 227
Period size: 81 Copynumber: 2.3 Consensus size: 81
44331811 TATAATGATC
* * * **
44331821 GTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCACTCAGTTAAAATGACCGTAATGCCCTT
1 GTAATGCCCCTATAGGGTAAAATGACTGTAATACCCCACTCAGGGAAAATGACCGTAATGCCCTT
44331886 GTAAGGTAAAATTACT
66 GTAAGGTAAAATTACT
* **
44331902 GTAATGCCCCTATAGGGTAAAATGACTGTAATATCCCTGT-AGGGAGAAATGACCGTAATGCCCT
1 GTAATGCCCCTATAGGGTAAAATGACTGTAATACCCCACTCAGGGA-AAATGACCGTAATGCCCT
** *
44331966 TGTGGGGTAAAATTATT
65 TGTAAGGTAAAATTACT
* * * *
44331983 GAAATACCCCCAAAGGGTAAAATGACT
1 GTAATGCCCCTATAGGGTAAAATGACT
44332010 ATTTTCCCCC
Statistics
Matches: 92, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 3 0.03
81 89 0.97
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (81 bp):
GTAATGCCCCTATAGGGTAAAATGACTGTAATACCCCACTCAGGGAAAATGACCGTAATGCCCTT
GTAAGGTAAAATTACT
Found at i:44332127 original size:16 final size:16
Alignment explanation
Indices: 44332106--44332144 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
44332096 TTATGGGCGA
*
44332106 GACATTCTACATACAT
1 GACATTCTACAAACAT
*
44332122 GACATTCTGCAAACAT
1 GACATTCTACAAACAT
44332138 GACATTC
1 GACATTC
44332145 AGCATGGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.28
Consensus pattern (16 bp):
GACATTCTACAAACAT
Found at i:44340863 original size:55 final size:55
Alignment explanation
Indices: 44340779--44340888 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
44340769 AGAAGACTCC
44340779 ATGGATGAATGCTTGTTCGGTCAAGCTTGAATTCCTTGCATGGTATGATTCCAAG
1 ATGGATGAATGCTTGTTCGGTCAAGCTTGAATTCCTTGCATGGTATGATTCCAAG
44340834 ATGGATGAATGCTTGTTCGGTCAAGCTTGAATTCCTTGCATGGTATGATTCCAAG
1 ATGGATGAATGCTTGTTCGGTCAAGCTTGAATTCCTTGCATGGTATGATTCCAAG
44340889 TCCCGTTTGT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (55 bp):
ATGGATGAATGCTTGTTCGGTCAAGCTTGAATTCCTTGCATGGTATGATTCCAAG
Found at i:44341597 original size:41 final size:41
Alignment explanation
Indices: 44341534--44341753 Score: 224
Period size: 41 Copynumber: 5.4 Consensus size: 41
44341524 GTCAATTATT
* *
44341534 CCCTGAATTGCACATTCGTGCCCCTAATTGTACTTCGGTAC
1 CCCTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
* * * *
44341575 CCTTGAATTGCACATACCTGCCCCTGTTTATACTTCGGTAC
1 CCCTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
* *** * * *
44341616 CCCTGAATTGCACATACGTTCTATTGTTTGTGCTTCGATAC
1 CCCTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
* * * * * *
44341657 CTCTGAACTACACATACGTGCCCTTATTTGTATTTCAGTAC
1 CCCTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
* * * *
44341698 CCCTCAATTGCACATATGTTCCCCTATTTATACTTCGGTAC
1 CCCTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
*
44341739 CCCTAAATTGCACAT
1 CCCTGAATTGCACAT
44341754 GTGTACCCCT
Statistics
Matches: 142, Mismatches: 37, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
41 142 1.00
ACGTcount: A:0.22, C:0.30, G:0.14, T:0.35
Consensus pattern (41 bp):
CCCTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
Found at i:44341763 original size:41 final size:41
Alignment explanation
Indices: 44341534--44341778 Score: 220
Period size: 41 Copynumber: 6.0 Consensus size: 41
44341524 GTCAATTATT
* * *
44341534 CCCTGAATTGCACATTCGTGCCCCTAATTGTACTTCGGTAC
1 CCCTGAATTGCACATACGTGCCCCTATTTATACTTCGGTAC
* * *
44341575 CCTTGAATTGCACATACCTGCCCCTGTTTATACTTCGGTAC
1 CCCTGAATTGCACATACGTGCCCCTATTTATACTTCGGTAC
* *** * * * *
44341616 CCCTGAATTGCACATACGTTCTATTGTTTGTGCTTCGATAC
1 CCCTGAATTGCACATACGTGCCCCTATTTATACTTCGGTAC
* * * * * * *
44341657 CTCTGAACTACACATACGTGCCCTTATTTGTATTTCAGTAC
1 CCCTGAATTGCACATACGTGCCCCTATTTATACTTCGGTAC
* * *
44341698 CCCTCAATTGCACATATGTTCCCCTATTTATACTTCGGTAC
1 CCCTGAATTGCACATACGTGCCCCTATTTATACTTCGGTAC
* ** * * *
44341739 CCCTAAATTGCACATGTGTACCCCTGTTTATACTCCGGTA
1 CCCTGAATTGCACATACGTGCCCCTATTTATACTTCGGTA
44341779 ACTTTGAATC
Statistics
Matches: 163, Mismatches: 41, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
41 163 1.00
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.35
Consensus pattern (41 bp):
CCCTGAATTGCACATACGTGCCCCTATTTATACTTCGGTAC
Found at i:44341767 original size:123 final size:123
Alignment explanation
Indices: 44341544--44341767 Score: 286
Period size: 123 Copynumber: 1.8 Consensus size: 123
44341534 CCCTGAATTG
* * * * *
44341544 CACATTCGTGCCCCTAATTGTACTTCGGTACCCTTGAATTGCACATACCTGCCCCTGTTTATACT
1 CACATACGTGCCCCTAATTGTACTTCAGTACCCCTCAATTGCACATACCTGCCCCTATTTATACT
* * * *
44341609 TCGGTACCCCTGAATTGCACATACGTTCTATTGTTTGTGCTTCGATACCTCTGAACTA
66 TCGGTACCCCTAAATTGCACATACGTACCACTGTTTGTGCTTCGATACCTCTGAACTA
* * * ** *
44341667 CACATACGTGCCCTTATTTGTATTTCAGTACCCCTCAATTGCACATATGTTCCCCTATTTATACT
1 CACATACGTGCCCCTAATTGTACTTCAGTACCCCTCAATTGCACATACCTGCCCCTATTTATACT
** *
44341732 TCGGTACCCCTAAATTGCACATGTGTACCCCTGTTT
66 TCGGTACCCCTAAATTGCACATACGTACCACTGTTT
44341768 ATACTCCGGT
Statistics
Matches: 83, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
123 83 1.00
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (123 bp):
CACATACGTGCCCCTAATTGTACTTCAGTACCCCTCAATTGCACATACCTGCCCCTATTTATACT
TCGGTACCCCTAAATTGCACATACGTACCACTGTTTGTGCTTCGATACCTCTGAACTA
Found at i:44345753 original size:50 final size:50
Alignment explanation
Indices: 44345678--44345818 Score: 210
Period size: 50 Copynumber: 2.8 Consensus size: 50
44345668 CATTTGGGTA
44345678 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* * *
44345728 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCGCTGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* *** *
44345778 GAGAGGTCCCCCATAAGACCATGTCTGGGATATGGCATTGG
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
44345819 TAGTACAGGA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 82 1.00
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:44346122 original size:20 final size:20
Alignment explanation
Indices: 44346084--44346122 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
44346074 TAAGCAAGCA
*
44346084 AGTAAGTAAACAAGTAAGTT
1 AGTAAGTAAACAAGAAAGTT
*
44346104 AGTAAGTAAAGAAGAAAGT
1 AGTAAGTAAACAAGAAAGT
44346123 AAAGATCCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.23, T:0.21
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGTT
Found at i:44351889 original size:21 final size:21
Alignment explanation
Indices: 44351863--44351969 Score: 78
Period size: 21 Copynumber: 5.2 Consensus size: 21
44351853 CTTAATTATT
*
44351863 CCCTGAATTGCACATATGTGC
1 CCCTGAATTGCACATACGTGC
* * *
44351884 CCCTG-ATTGTAC-TTCGGTAC
1 CCCTGAATTGCACATAC-GTGC
*
44351904 CCTTGAATTGCACATACGTGC
1 CCCTGAATTGCACATACGTGC
* * * * *
44351925 CCTTG-TTTGTAC-TTCGGTAC
1 CCCTGAATTGCACATAC-GTGC
44351945 CCCTGAATTGCACATACGTGC
1 CCCTGAATTGCACATACGTGC
44351966 CCCT
1 CCCT
44351970 ATTTGTACTT
Statistics
Matches: 63, Mismatches: 17, Indels: 12
0.68 0.18 0.13
Matches are distributed among these distances:
19 3 0.05
20 25 0.40
21 31 0.49
22 4 0.06
ACGTcount: A:0.19, C:0.31, G:0.19, T:0.32
Consensus pattern (21 bp):
CCCTGAATTGCACATACGTGC
Found at i:44351911 original size:41 final size:40
Alignment explanation
Indices: 44351863--44352095 Score: 272
Period size: 41 Copynumber: 5.7 Consensus size: 40
44351853 CTTAATTATT
* *
44351863 CCCTGAATTGCACATATGTGCCCCTGATTGTACTTCGGTAC
1 CCCTGAATTGCACATACGTGCCCCT-ATTGTACTTTGGTAC
* * * *
44351904 CCTTGAATTGCACATACGTGCCCTTGTTTGTACTTCGGTAC
1 CCCTGAATTGCACATACGTGCCCCT-ATTGTACTTTGGTAC
*
44351945 CCCTGAATTGCACATACGTGCCCCTATTTGTACTTTGATAC
1 CCCTGAATTGCACATACGTGCCCCTA-TTGTACTTTGGTAC
* *
44351986 CCCTAAATTGCACATGA-GTGCCCCTTTCTGTACTTTGGTAC
1 CCCTGAATTGCACAT-ACGTGCCCCTAT-TGTACTTTGGTAC
* * *
44352027 CCTTGAATTGCACATGCGTGCTCCTAATTGTACTTTGGTAC
1 CCCTGAATTGCACATACGTGCCCCT-ATTGTACTTTGGTAC
*
44352068 CCCTAAATTAG-ACATACGTGCCCCTATT
1 CCCTGAATT-GCACATACGTGCCCCTATT
44352096 TACACTCCGA
Statistics
Matches: 165, Mismatches: 21, Indels: 13
0.83 0.11 0.07
Matches are distributed among these distances:
40 4 0.02
41 158 0.96
42 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (40 bp):
CCCTGAATTGCACATACGTGCCCCTATTGTACTTTGGTAC
Found at i:44352030 original size:123 final size:123
Alignment explanation
Indices: 44351863--44352096 Score: 332
Period size: 123 Copynumber: 1.9 Consensus size: 123
44351853 CTTAATTATT
*
44351863 CCCTGAATTGCACATATGTGCCCCTGATTGTACTTCGGTACCCTTGAATTGCACATACGTGC-CC
1 CCCTAAATTGCACATATGTGCCCCTGATTGTACTTCGGTACCCTTGAATTGCACATACGTGCTCC
** *
44351927 TTGTTTGTACTTCGGTACCCCTGAATT-GCACATACGTGCCCCTATTTGTACTTTGATAC
66 -TAATTGTACTTCGGTACCCCTAAATTAG-ACATACGTGCCCCTATTTGTACTTTGATAC
* * *
44351986 CCCTAAATTGCACATGA-GTGCCCCT-TTCTGTACTTTGGTACCCTTGAATTGCACATGCGTGCT
1 CCCTAAATTGCACAT-ATGTGCCCCTGAT-TGTACTTCGGTACCCTTGAATTGCACATACGTGCT
*
44352049 CCTAATTGTACTTTGGTACCCCTAAATTAGACATACGTGCCCCTATTT
64 CCTAATTGTACTTCGGTACCCCTAAATTAGACATACGTGCCCCTATTT
44352097 ACACTCCGAT
Statistics
Matches: 99, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
122 1 0.01
123 94 0.95
124 4 0.04
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (123 bp):
CCCTAAATTGCACATATGTGCCCCTGATTGTACTTCGGTACCCTTGAATTGCACATACGTGCTCC
TAATTGTACTTCGGTACCCCTAAATTAGACATACGTGCCCCTATTTGTACTTTGATAC
Done.