Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 152 of 187
Found at i:45698983 original size:9 final size:9
Alignment explanation
Indices: 45698969--45699005 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
45698959 TATAGTTTGA
45698969 TATTCGAAT
1 TATTCGAAT
45698978 TATTCGAAT
1 TATTCGAAT
* *
45698987 TATTTGAGT
1 TATTCGAAT
45698996 TATTCGAAT
1 TATTCGAAT
45699005 T
1 T
45699006 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:45701284 original size:27 final size:27
Alignment explanation
Indices: 45701248--45701359 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 27
45701238 AATGGAAAAC
*
45701248 TGTGGCAATCTATAAAATGAAAGCCTT
1 TGTGGCAATCTATGAAATGAAAGCCTT
* * *
45701275 TGTTGCAATCTATGAAATGGATGTCC-T
1 TGTGGCAATCTATGAAATGAAAG-CCTT
* *
45701302 TGTGGCAATCTATGAAATGGAAGCTTT
1 TGTGGCAATCTATGAAATGAAAGCCTT
* * *
45701329 TGTGGC-ATATATTAAATAAAAGCCTT
1 TGTGGCAATCTATGAAATGAAAGCCTT
45701355 TGTGG
1 TGTGG
45701360 AATTCTCTGA
Statistics
Matches: 71, Mismatches: 12, Indels: 5
0.81 0.14 0.06
Matches are distributed among these distances:
26 21 0.30
27 48 0.68
28 2 0.03
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.34
Consensus pattern (27 bp):
TGTGGCAATCTATGAAATGAAAGCCTT
Found at i:45703382 original size:2 final size:2
Alignment explanation
Indices: 45703375--45703404 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
45703365 GAGCTTCCTT
*
45703375 GA GA GA GA GA GA GA GA GA GA GA AA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
45703405 TCCCTATTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Found at i:45708792 original size:18 final size:18
Alignment explanation
Indices: 45708771--45708828 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
45708761 TGAACTTGTC
45708771 TAAAAAATTATACTTTTT
1 TAAAAAATTATACTTTTT
* *
45708789 TAAATTATTTATA-TTTTT
1 TAAA-AAATTATACTTTTT
45708807 TAAAATAATTATACTTTTT
1 TAAAA-AATTATACTTTTT
45708826 TAA
1 TAA
45708829 TTTATGTCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
18 19 0.58
19 14 0.42
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55
Consensus pattern (18 bp):
TAAAAAATTATACTTTTT
Found at i:45708806 original size:19 final size:19
Alignment explanation
Indices: 45708778--45708833 Score: 78
Period size: 18 Copynumber: 3.0 Consensus size: 19
45708768 GTCTAAAAAA
45708778 TTATACTTTTTTAAATTAT
1 TTATACTTTTTTAAATTAT
* *
45708797 TTATA-TTTTTTAAAATAA
1 TTATACTTTTTTAAATTAT
*
45708815 TTATACTTTTTTAATTTAT
1 TTATACTTTTTTAAATTAT
45708834 GTCCCCACGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
18 16 0.52
19 15 0.48
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATACTTTTTTAAATTAT
Found at i:45720442 original size:11 final size:12
Alignment explanation
Indices: 45720397--45720449 Score: 90
Period size: 12 Copynumber: 4.5 Consensus size: 12
45720387 AACAAGCTCT
45720397 TTTATTGACTCG
1 TTTATTGACTCG
*
45720409 TTTATTGGCTCG
1 TTTATTGACTCG
45720421 TTTATTGACTCG
1 TTTATTGACTCG
45720433 TTTA-TGACTCG
1 TTTATTGACTCG
45720444 TTTATT
1 TTTATT
45720450 TATTAATGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
11 11 0.29
12 27 0.71
ACGTcount: A:0.15, C:0.15, G:0.17, T:0.53
Consensus pattern (12 bp):
TTTATTGACTCG
Found at i:45720556 original size:12 final size:12
Alignment explanation
Indices: 45720528--45720579 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
45720518 TTGTTTATTA
*
45720528 TTCATTAACATTG
1 TTCATGAACA-TG
45720541 TTCATGAACATG
1 TTCATGAACATG
* *
45720553 TTCAAT-TATATG
1 TTC-ATGAACATG
45720565 TTCATGAACATG
1 TTCATGAACATG
45720577 TTC
1 TTC
45720580 GATTAAGTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
11 2 0.06
12 19 0.59
13 11 0.34
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (12 bp):
TTCATGAACATG
Found at i:45720566 original size:24 final size:23
Alignment explanation
Indices: 45720539--45720602 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 23
45720529 TCATTAACAT
45720539 TGTTCATGAACATGTTCAATTATA
1 TGTTCATGAACATGTTCAATTA-A
*
45720563 TGTTCATGAACATGTTCGATTAA
1 TGTTCATGAACATGTTCAATTAA
*
45720586 -GTTAAATGAACATGTTC
1 TGTT-CATGAACATGTTC
45720603 GTGAACATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 3 0.08
23 13 0.35
24 21 0.57
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (23 bp):
TGTTCATGAACATGTTCAATTAA
Found at i:45720613 original size:23 final size:23
Alignment explanation
Indices: 45720568--45720614 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
45720558 TTATATGTTC
* *
45720568 ATGAACATGTTCGATTAAGTTAA
1 ATGAACATGTTCGATGAAATTAA
45720591 ATGAACATGTTCG-TGAACATTAA
1 ATGAACATGTTCGATGAA-ATTAA
45720614 A
1 A
45720615 CAAACGAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (23 bp):
ATGAACATGTTCGATGAAATTAA
Found at i:45722329 original size:26 final size:28
Alignment explanation
Indices: 45722271--45722334 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 28
45722261 GTGTCATATG
45722271 AATTAA-AATAGGATAAAATAAATAATA
1 AATTAATAATAGGATAAAATAAATAATA
*
45722298 AGTTAATAATA-G-TAAAAT-AATAATTA
1 AATTAATAATAGGATAAAATAAATAA-TA
45722324 AATTAAATAAT
1 AATT-AATAAT
45722335 TATGGTATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 5 0.16
26 11 0.34
27 12 0.38
28 4 0.12
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (28 bp):
AATTAATAATAGGATAAAATAAATAATA
Found at i:45723652 original size:24 final size:23
Alignment explanation
Indices: 45723601--45723658 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
45723591 TTGTATATAC
*
45723601 AATATATAAATGAGGGAGTTGGT
1 AATATATATATGAGGGAGTTGGT
*
45723624 AATATATATATGAGTGGGGTT-GT
1 AATATATATATGAG-GGAGTTGGT
45723647 ATATATATATAT
1 A-ATATATATAT
45723659 ATGTATACAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
23 16 0.52
24 15 0.48
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (23 bp):
AATATATATATGAGGGAGTTGGT
Found at i:45725597 original size:33 final size:34
Alignment explanation
Indices: 45725558--45725621 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
45725548 ATCTTAACCA
*
45725558 CATTGAAACTAATTCATC-ACTTA-CCATATTGGT
1 CATTGAAA-TAATGCATCAACTTAGCCATATTGGT
*
45725591 CATTGAAATCATGCATCAACTTAGCCATATT
1 CATTGAAATAATGCATCAACTTAGCCATATT
45725622 AACACACATC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 7 0.26
33 13 0.48
34 7 0.26
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (34 bp):
CATTGAAATAATGCATCAACTTAGCCATATTGGT
Found at i:45734507 original size:25 final size:23
Alignment explanation
Indices: 45734474--45734534 Score: 59
Period size: 25 Copynumber: 2.6 Consensus size: 23
45734464 TTTAAATAAC
*
45734474 AATATATAATAAAGATTAAAACCA
1 AATACATAATAAAGATTAAAA-CA
* **
45734498 TAATACATAATAGATTTTAAAACA
1 -AATACATAATAAAGATTAAAACA
*
45734522 AATACCTAATAAA
1 AATACATAATAAA
45734535 TCTATAATGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
23 11 0.37
24 2 0.07
25 17 0.57
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (23 bp):
AATACATAATAAAGATTAAAACA
Found at i:45734740 original size:21 final size:21
Alignment explanation
Indices: 45734717--45734763 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
45734707 ATATAATACT
**
45734717 AATAATAATCATAGAGG-TAAT
1 AATAATAAGAATA-AGGATAAT
45734738 AATAATAAGAATAAGGATAAT
1 AATAATAAGAATAAGGATAAT
45734759 AATAA
1 AATAA
45734764 CAATATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.60, C:0.02, G:0.13, T:0.26
Consensus pattern (21 bp):
AATAATAAGAATAAGGATAAT
Found at i:45739576 original size:86 final size:86
Alignment explanation
Indices: 45739431--45739601 Score: 290
Period size: 86 Copynumber: 2.0 Consensus size: 86
45739421 CTTTTGACAA
*
45739431 CCCAATGTGAGTCTAATCTTAAACTATTATATAGAATTGTTCAAACAGAAAAGCATTTAATTTAG
1 CCCAATGTGAGTCTAATCTTAAACCATTATATAGAATTGTTCAAACAGAAAAGCATTTAATTTAG
45739496 AGCATCATACCAATTGAGCAG
66 AGCATCATACCAATTGAGCAG
* *
45739517 CCCAATGTGAGTCTAATTTTAAACCATTATATATAATTGTTCAAACA-ATAAAGCATTTAATTTA
1 CCCAATGTGAGTCTAATCTTAAACCATTATATAGAATTGTTCAAACAGA-AAAGCATTTAATTTA
*
45739581 GAGCATCATAGCAATTGAGCA
65 GAGCATCATACCAATTGAGCA
45739602 TAATGTAAGG
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
85 1 0.01
86 79 0.99
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.32
Consensus pattern (86 bp):
CCCAATGTGAGTCTAATCTTAAACCATTATATAGAATTGTTCAAACAGAAAAGCATTTAATTTAG
AGCATCATACCAATTGAGCAG
Found at i:45743887 original size:22 final size:22
Alignment explanation
Indices: 45743857--45743908 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
45743847 AATGGCTAAG
* * *
45743857 AGCCGTAAATAGGATAGCTATA
1 AGCCATAAATAGAATAGCTACA
* *
45743879 AGCTATAAATAGAATGGCTACA
1 AGCCATAAATAGAATAGCTACA
45743901 AGCCATAA
1 AGCCATAA
45743909 GTACATTAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.21
Consensus pattern (22 bp):
AGCCATAAATAGAATAGCTACA
Found at i:45743955 original size:32 final size:33
Alignment explanation
Indices: 45743898--45744041 Score: 138
Period size: 32 Copynumber: 4.5 Consensus size: 33
45743888 TAGAATGGCT
* * * *
45743898 ACAAGCCATAAGTA-CATTAATATGATTAGCAT
1 ACAAGCCATCAGTAGCAGTAATATGATCAGCAC
* *
45743930 A-AAGCCATCAGTAGCAGTGATATGATCGGCAC
1 ACAAGCCATCAGTAGCAGTAATATGATCAGCAC
* *
45743962 ATAA-CCATCAGTAACAGTAATATGAT-AGGCAC
1 ACAAGCCATCAGTAGCAGTAATATGATCA-GCAC
* * *
45743994 A-AAGCTATCAGTAGCAGTGATATGATCAGTAC
1 ACAAGCCATCAGTAGCAGTAATATGATCAGCAC
45744026 ACAA-CCATCAGTAGCA
1 ACAAGCCATCAGTAGCA
45744042 TCGCGGCAAA
Statistics
Matches: 92, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
31 13 0.14
32 74 0.80
33 5 0.05
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.22
Consensus pattern (33 bp):
ACAAGCCATCAGTAGCAGTAATATGATCAGCAC
Found at i:45744016 original size:64 final size:64
Alignment explanation
Indices: 45743898--45744038 Score: 187
Period size: 64 Copynumber: 2.2 Consensus size: 64
45743888 TAGAATGGCT
* * * *
45743898 ACAAGCCATAAGT-ACATTAATATGATTAGCATAAAGCCATCAGTAGCAGTGATATGATCGGCAC
1 ACAA-CCATCAGTAACAGTAATATGATTAGCACAAAGCCATCAGTAGCAGTGATATGATCAGCAC
* * *
45743962 ATAACCATCAGTAACAGTAATATGA-TAGGCACAAAGCTATCAGTAGCAGTGATATGATCAGTAC
1 ACAACCATCAGTAACAGTAATATGATTA-GCACAAAGCCATCAGTAGCAGTGATATGATCAGCAC
45744026 ACAACCATCAGTA
1 ACAACCATCAGTA
45744039 GCATCGCGGC
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
63 9 0.13
64 58 0.87
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (64 bp):
ACAACCATCAGTAACAGTAATATGATTAGCACAAAGCCATCAGTAGCAGTGATATGATCAGCAC
Found at i:45744253 original size:15 final size:15
Alignment explanation
Indices: 45744235--45744264 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45744225 ACAGACAAAC
45744235 CAGACAAACCAGTCA
1 CAGACAAACCAGTCA
*
45744250 CAGACAAATCAGTCA
1 CAGACAAACCAGTCA
45744265 TACCAATCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.30, G:0.13, T:0.10
Consensus pattern (15 bp):
CAGACAAACCAGTCA
Found at i:45744286 original size:24 final size:24
Alignment explanation
Indices: 45744211--45744289 Score: 122
Period size: 24 Copynumber: 3.3 Consensus size: 24
45744201 TGCTCAGAAT
45744211 CAGTCATACCAATCACAGACAAAC
1 CAGTCATACCAATCACAGACAAAC
* * * *
45744235 CAGACAAACCAGTCACAGACAAAT
1 CAGTCATACCAATCACAGACAAAC
45744259 CAGTCATACCAATCACAGACAAAC
1 CAGTCATACCAATCACAGACAAAC
45744283 CAGTCAT
1 CAGTCAT
45744290 TTACATCACG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.46, C:0.32, G:0.10, T:0.13
Consensus pattern (24 bp):
CAGTCATACCAATCACAGACAAAC
Found at i:45744303 original size:24 final size:24
Alignment explanation
Indices: 45744270--45744318 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
45744260 AGTCATACCA
*
45744270 ATCACAGACAAACCAGTCATTTAC
1 ATCACAGACAAACCAATCATTTAC
* *
45744294 ATCACGGACAAATCAATCATTTAC
1 ATCACAGACAAACCAATCATTTAC
45744318 A
1 A
45744319 CTCAAGGGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.27, G:0.08, T:0.22
Consensus pattern (24 bp):
ATCACAGACAAACCAATCATTTAC
Found at i:45744412 original size:53 final size:54
Alignment explanation
Indices: 45744355--45744546 Score: 165
Period size: 53 Copynumber: 3.6 Consensus size: 54
45744345 CTCCAGAGGC
* * * *** * *
45744355 ATTACGGTCATTTAACCTTATAGGGGTATTTTGGTTATTTAACCCTAT-GGGGT
1 ATTACGGTCATTTAACCCTACAGGGGCATTACAGTCATTTAACCCTATAGGGGA
* *
45744408 ATTACGGTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCCTATAGGGGA
1 ATTACGGTCATTTAACCCTACAGGGGCATTACAGTCATTTAACCCTATAGGGGA
* * ** * * *
45744462 ATTACTGTCATTTTACCCTACA-ATGCATTAC-GATCATTTTACCCTACAGGGGC
1 ATTACGGTCATTTAACCCTACAGGGGCATTACAG-TCATTTAACCCTATAGGGGA
* * * *
45744515 ACTACAGTCATTTTACCCTATAGGGGCATTAC
1 ATTACGGTCATTTAACCCTACAGGGGCATTAC
45744547 GGTTAATTTA
Statistics
Matches: 116, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
52 1 0.01
53 83 0.72
54 32 0.28
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (54 bp):
ATTACGGTCATTTAACCCTACAGGGGCATTACAGTCATTTAACCCTATAGGGGA
Found at i:45744422 original size:27 final size:26
Alignment explanation
Indices: 45744352--45744558 Score: 171
Period size: 27 Copynumber: 7.8 Consensus size: 26
45744342 ACCCTCCAGA
* *
45744352 GGCATTACGGTCATTTAACCTTATAGG
1 GGCATTACGGTCATTTTACCCTAT-GG
* ** * *
45744379 GGTATTTTGGTTATTTAACCCTATGG
1 GGCATTACGGTCATTTTACCCTATGG
* *
45744405 GGTATTACGGTCATTTTACCCTACAGG
1 GGCATTACGGTCATTTTACCCTA-TGG
*
45744432 GGCATTACAGTCATTTTACCCTATAGG
1 GGCATTACGGTCATTTTACCCTAT-GG
* * ***
45744459 GGAATTACTGTCATTTTACCCTACAA
1 GGCATTACGGTCATTTTACCCTATGG
* * *
45744485 TGCATTACGATCATTTTACCCTACAGG
1 GGCATTACGGTCATTTTACCCTA-TGG
* *
45744512 GGCACTACAGTCATTTTACCCTATAGG
1 GGCATTACGGTCATTTTACCCTAT-GG
* *
45744539 GGCATTACGGTTAATTTACC
1 GGCATTACGGTCATTTTACC
45744559 TATCGACGGT
Statistics
Matches: 142, Mismatches: 34, Indels: 8
0.77 0.18 0.04
Matches are distributed among these distances:
26 40 0.28
27 102 0.72
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (26 bp):
GGCATTACGGTCATTTTACCCTATGG
Found at i:45744436 original size:80 final size:80
Alignment explanation
Indices: 45744335--45744546 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 80
45744325 GGGAAAAATA
* * * * * * * *
45744335 GTCA-TTTACCCTCCAGAGGCATTACGGTCATTTAACCTTATAGGGGTATT-TTGGTTATTTAAC
1 GTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCCTATAGGGGAATTACT-GTCATTTAAC
*** *
45744398 CCTATGGGGTATTACG
65 CCTACAAGGCATTACG
*
45744414 GTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCCTATAGGGGAATTACTGTCATTTTACC
1 GTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCCTATAGGGGAATTACTGTCATTTAACC
*
45744479 CTACAATGCATTACG
66 CTACAAGGCATTACG
* * *
45744494 ATCATTTTACCCTACAGGGGCACTACAGTCATTTTACCCTATAGGGGCATTAC
1 GTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCCTATAGGGGAATTAC
45744547 GGTTAATTTA
Statistics
Matches: 114, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
79 4 0.04
80 109 0.96
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (80 bp):
GTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCCTATAGGGGAATTACTGTCATTTAACC
CTACAAGGCATTACG
Found at i:45744582 original size:54 final size:55
Alignment explanation
Indices: 45744519--45744665 Score: 176
Period size: 54 Copynumber: 2.7 Consensus size: 55
45744509 AGGGGCACTA
* * *
45744519 CAGTCATTTTACCCTATAG-GGGCATTACGGTTAA-TTTACCTATCGACGGTATTT
1 CAGTAATTTTACCCTATAGAGGGCATTAC-GATAATTTTACCCATCGACGGTATTT
* * * *
45744573 CAGTAATTTTACCC-ATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTT
1 CAGTAATTTTACCCTATAGAGGGCATTACGATAATTTTACCCATCGACGGTATTT
* *
45744627 CGGTAATTTTACCCT-TAGAGGGCATTTCGATAATTTTAC
1 CAGTAATTTTACCCTATAGAGGGCATTACGATAATTTTAC
45744666 GGCCCAATCC
Statistics
Matches: 80, Mismatches: 10, Indels: 6
0.83 0.10 0.06
Matches are distributed among these distances:
53 7 0.09
54 73 0.91
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.37
Consensus pattern (55 bp):
CAGTAATTTTACCCTATAGAGGGCATTACGATAATTTTACCCATCGACGGTATTT
Found at i:45744583 original size:27 final size:26
Alignment explanation
Indices: 45744553--45744665 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 26
45744543 TTACGGTTAA
* *
45744553 TTTACCTATCGACGGTATTTCAGTAAT
1 TTTACCCATCGAGGGTATTTC-GTAAT
45744580 TTTACCCATCGAGGGTATTTCGATAAT
1 TTTACCCATCGAGGGTATTTCG-TAAT
45744607 TTTACCCATCGAGGGTATTTCGGTAAT
1 TTTACCCATCGAGGGTATTTC-GTAAT
* * *
45744634 TTTACCCTTAGAGGGCATTTCGATAAT
1 TTTACCCATCGAGGGTATTTCG-TAAT
45744661 TTTAC
1 TTTAC
45744666 GGCCCAATCC
Statistics
Matches: 78, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
26 2 0.03
27 75 0.96
28 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.39
Consensus pattern (26 bp):
TTTACCCATCGAGGGTATTTCGTAAT
Found at i:45746606 original size:21 final size:21
Alignment explanation
Indices: 45746548--45746600 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
45746538 TTTTTTTCCA
* *
45746548 AAACCACTTTACTTTAGGGGT
1 AAACCACTTGACTTTAAGGGT
45746569 AAACCACTTGACTTTAAGGGT
1 AAACCACTTGACTTTAAGGGT
45746590 AAACCACTTGA
1 AAACCACTTGA
45746601 ACTTAACTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (21 bp):
AAACCACTTGACTTTAAGGGT
Found at i:45746962 original size:24 final size:24
Alignment explanation
Indices: 45746935--45746986 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
45746925 TTAGTAAGTC
*
45746935 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
45746959 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
45746983 AAAT
1 AAAT
45746987 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:45748933 original size:24 final size:24
Alignment explanation
Indices: 45748906--45748957 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
45748896 TTAGTAAGTC
*
45748906 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
45748930 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
45748954 AAAT
1 AAAT
45748958 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:45749205 original size:15 final size:15
Alignment explanation
Indices: 45749185--45749218 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
45749175 GGGCTATTAT
45749185 ATATAAGGTTCGCAC
1 ATATAAGGTTCGCAC
45749200 ATATAAGGTTCGCAC
1 ATATAAGGTTCGCAC
45749215 ATAT
1 ATAT
45749219 TAAATCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (15 bp):
ATATAAGGTTCGCAC
Found at i:45749253 original size:36 final size:34
Alignment explanation
Indices: 45749212--45749278 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
45749202 ATAAGGTTCG
45749212 CACATATTAAATCACATACTATATAACATGGGGATT
1 CACATATT--ATCACATACTATATAACATGGGGATT
**
45749248 CACATATTATGTCATACTATATAACATGGGG
1 CACATATTATCACATACTATATAACATGGGG
45749279 GCTCGTATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 21 0.72
36 8 0.28
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.31
Consensus pattern (34 bp):
CACATATTATCACATACTATATAACATGGGGATT
Found at i:45752488 original size:153 final size:151
Alignment explanation
Indices: 45752205--45753006 Score: 1226
Period size: 150 Copynumber: 5.3 Consensus size: 151
45752195 CAATTGTTCG
* *
45752205 TATTTTGGCCACTTT-TT-GTATTTTTTTCCCGGATTTTATTACTTTTAAAAAATATACTATTTT
1 TATTTCGGCC-CTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAAATATACTA-TTT
45752268 TTTAATTTTTTTAATTTTAAATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTT
64 TTTAA-TTTTTT-ATTTTAAATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTT
* *
45752333 TTTTAAATAAATTTTAAAAAAAACCCT
127 TTTTAAATAAA-TTT-AAAAAAATCAT
* *
45752360 TATTTCGGCCCTATGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAAATATACTATTTTC
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAAATATACTATTTTT
* * * *
45752425 TACTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTTTATTTTTT
66 TAATTTTTTATTTTAAATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTTT
* *
45752490 AAATAAGTTTAAAAAAACCAT
131 AAATAAATTTAAAAAAATCAT
*
45752511 TATTTCGGCCCTATGTTCGTATTTTTTATCCC-AGATTTTATTACTTTTAAAAAATATACTATTT
1 TATTTCGGCCCTTTGTTCGTATTTTTT-TCCCGA-ATTTTATTACTTTTAAAAAATATACTATTT
* * * *
45752575 TTTAATTTTTTAATTTTACATCATTTTAGTACATTATATTTGAAATGTATTAATTTGGTTTGTTT
64 TTTAATTTTTT-ATTTTAAATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTT
*
45752640 CTTAAATAAATTT-AAAAAATCAT
128 TTTAAATAAATTTAAAAAAATCAT
*
45752663 TATTTCGGCCCTTTGTTCGTA-TTTTTTCCCGAATTTTATTACTTTTAAAAAATACACTATTTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAAATATACTATTTTT
*
45752727 TAATTTTTTTATTTTAAATTATTTTAGTACATTATATTTAAAATGTATTAATTTAGTGTGTTTTT
66 TAA-TTTTTTATTTTAAATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTT
*
45752792 TAAATAAA-TT-AAAAAATCCT
130 TAAATAAATTTAAAAAAATCAT
45752812 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAAATATACTATTTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAAATATACTATTTTT
*
45752877 TAATTTTTTGTTTTAAATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTTT
66 TAATTTTTTATTTTAAATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTTT
*
45752942 AAATAAA-TTAAAAAAATCTT
131 AAATAAATTTAAAAAAATCAT
* *
45752962 TATTTCGGCCCTTTGTTTGTA-TTTTTTCCCGAATTTTCTTACTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTT
45753007 CAATAAAAAC
Statistics
Matches: 605, Mismatches: 33, Indels: 24
0.91 0.05 0.04
Matches are distributed among these distances:
149 124 0.20
150 169 0.28
151 50 0.08
152 75 0.12
153 120 0.20
154 9 0.01
155 17 0.03
156 41 0.07
ACGTcount: A:0.30, C:0.10, G:0.07, T:0.53
Consensus pattern (151 bp):
TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAAATATACTATTTTT
TAATTTTTTATTTTAAATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTTT
AAATAAATTTAAAAAAATCAT
Found at i:45753520 original size:153 final size:149
Alignment explanation
Indices: 45753010--45755843 Score: 3060
Period size: 151 Copynumber: 18.8 Consensus size: 149
45753000 TTACTTTCAA
* *
45753010 TAAAAACACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAAGAATAAAA
1 TAAAAA-ACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAA-AAAA
* * * *
45753075 T-TAGAAAATAATATATTTTTTAAAAGTAATAAAATC-CGAGAAAAATACGAACAAATGGCCGAA
64 TATA-AAAATAGTATATTTTTTAAAAGTAATAAAATCGGGAAAAAAATACGAACAAAGGGCCGAA
45753138 ATAAGGATTTTTTTTAATTTATT
128 ATAAGGA-TTTTTTTAATTTATT
*
45753161 TAAAAAACACACTAAATTAATACATTTCAAATATAATATACTAAAATAATGTAAAAGTAAAAAAT
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAA-TAAAAAAT
*
45753226 -TAAAAAATAGTATATTTTTTAAAAGTAATAAAATTCGGGAAAAAAATACGAACAAAGGGCTGAA
65 AT-AAAAATAGTATATTTTTTAAAAGTAATAAAA-TCGGGAAAAAAATACGAACAAAGGGCCGAA
45753290 ATAAGGATTTATTTTTTAAATTTATT
128 ATAAGGA--T-TTTTTT-AATTTATT
* * * *
45753316 TTAAAAACACAGTAAATTAATACATTTCAAACATGATGTACTAAAATAATGTAAAATAATAAAAT
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAA-AAAAT
* * * * * * *
45753381 ATGAAAATAATATATTTTTATGGAAAGTGATAAAATCGGGGAAAAAAATACGAACAAAGAGTCAA
65 ATAAAAATAGTATATTTTT-T-AAAAGTAATAAAATC-GGGAAAAAAATACGAACAAAGGGCCGA
*
45753446 AATAAGGATTCTTTTAATTTATT
127 AATAAGGATTTTTTTAATTTATT
* *
45753469 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAATTAAAAAATT
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAATA
* * *
45753534 TAAAAATAGTATATTTTTTAAAAGTAATAAAATCCGAGAAACAAATACGAACAAAAGGCCGAAAT
66 TAAAAATAGTATATTTTTTAAAAGTAATAAAAT-CGGGAAAAAAATACGAACAAAGGGCCGAAAT
45753599 AAGGATTTTTTTTAAATTTATT
130 AAGGA-TTTTTTT-AATTTATT
* * *
45753621 T-CAAAA-ACAC------AATACATTTCATATATAATGTACTAAAATAATGTAAAATAAAAAAAA
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAATA
* * *
45753678 TTAAAAAGTAGTATATTTTTTAAAAGTAATAAAATCCGAGATAAAAAATACGAACATAGGGCAGA
66 -TAAAAA-TAGTATATTTTTTAAAAGTAATAAAAT-CGGGA-AAAAAATACGAACAAAGGGCCGA
* *
45753743 AATAAGGGTTTTTTTTAACTTATT
127 AATAA-GGATTTTTTTAATTTATT
* *
45753767 TAAAAAATACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAAAA
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAAT-AAAAAAT
* *
45753832 ATTAGAAAATAGTATATTTTTTAAAAGTAATAAAATTC-GGAATAAAATACGAACATAGGGCCGA
65 A-TA-AAAATAGTATATTTTTTAAAAGTAATAAAA-TCGGGAAAAAAATACGAACAAAGGGCCGA
*
45753896 AATAAGGGTTTTTTTAAATTTATT
127 AATAAGGATTTTTTT-AATTTATT
*
45753920 TAAAAAACACACTAAATTAATACATTTCAAATATAATATACTAAAATAATGTAAAATAAAAAA-A
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAATA
**
45753984 TTAGAAAATAGTATATTTTTTTAAAAGTAATAAAATCCGGG-AAAAAATA-GAAACTTAGGGCCG
66 -TA-AAAATAGTATA-TTTTTTAAAAGTAATAAAAT-CGGGAAAAAAATACG-AACAAAGGGCCG
*
45754047 AAATAAGGGTTTTTTTTAAATTTATT
126 AAATAA-GGATTTTTTT-AATTTATT
* *
45754073 TAAAAAACACACTATATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAAAA
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAATA
* *
45754138 TTAGAAAATAGTATATTTTTTAAAAGTAATAAAATTCGGGTAAAAAATA-GAACATAGGGCCGAA
66 -TA-AAAATAGTATATTTTTTAAAAGTAATAAAA-TCGGGAAAAAAATACGAACAAAGGGCCGAA
*
45754202 ATAAGGGTTTTTTTTAATTTATT
128 ATAA-GGATTTTTTTAATTTATT
45754225 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAAT------TA
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAATA
* * * * *
45754284 -AAAAATGGTATATGTTTTAAAAGTAATAAAATCTGGGAAAAAAATACGAACATAGGACCAAAAT
66 TAAAAATAGTATATTTTTTAAAAGTAATAAAATC-GGGAAAAAAATACGAACAAAGGGCCGAAAT
*
45754348 AAGGGTTTTTTTAAAATTTATT
130 AAGGATTTTTTT--AATTTATT
* *
45754370 T-AAAAACACACTAAATTAATACATTTCAAATATAATGTAATAAAATAAT-TAAAAATTAAAAAT
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGT-AAAATAAAAAAT
* * * * *
45754433 -TAAAAAATAGTATATTTTTTAAAAGTAATAAAATTCGAGAAAAAAATACGAAAAAATGACCAAA
65 AT-AAAAATAGTATATTTTTTAAAAGTAATAAAA-TCGGGAAAAAAATACGAACAAAGGGCCGAA
* * ** ** ** *** *
45754497 ATACGAACAATTGGTGCTGCCTC
128 ATAAGGA-TTTTTTTAATTTATT
*** **** * * **** ** ** ****
45754520 TGCCACTGGCACCAAAGGTGCCGC-TTGTGGCAGGCCCCCCT-TCAGTATGTTTTTTTTTAACTG
1 TAAAAAACACACTAAA-TTAATACATT-T--CA------AATAT-A--ATGTACTAAAATAA-TG
**** ****** * *** * * ** **
45754583 TCTTTTTTTTTGTATTATTTTGGTAAATAATAAAAAAGTAATAAAATCCGGGAAAAAAATACGAA
52 TAAAATAAAAAATATAAAAATAGTATATTTTTTAAAAGTAATAAAAT-CGGGAAAAAAATACGAA
* * *
45754648 CAAAGAGTCAAAATAAGGATTTTTTTAATTTATT
116 CAAAGGGCCGAAATAAGGATTTTTTTAATTTATT
*
45754682 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAAT-TAAAATTTAAAAAT
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAA-TAAAAAAT
* *
45754746 TTAAAAATAGTATA-TTTTTAAAAGTAATAAAATTCGGGAAAAAAATACGAACAAATGGCCGAAA
65 ATAAAAATAGTATATTTTTTAAAAGTAATAAAA-TCGGGAAAAAAATACGAACAAAGGGCCGAAA
*
45754810 TAAGGATTTTTTTTATTTATT
129 TAAGGATTTTTTTAATTTATT
* * * * * **
45754831 TAAAAAACAAAGTAAATTAATACATTTCAAACATGATGTACTAAAATAATATAAAATATTAAA-A
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAATA
* * *
45754895 T---AATA-TAT-TTTTATTGAAAGTAATAAAATC-CGAGAAAAAATACGAACAAAAGGCCGAAA
66 TAAAAATAGTATATTTT-TTAAAAGTAATAAAATCGGGA-AAAAAATACGAACAAAGGGCCGAAA
45754954 TAAGGA-TTTTTTAATTTATT
129 TAAGGATTTTTTTAATTTATT
*
45754974 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAATTAATGTAAAATAAAAAA-A
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAATA
*
45755038 TAAAAAATAGTATATTTTTTAAAAGTAATAAAATTCGGG-AAAAAATACGAACAAATGGCCGAAA
66 T-AAAAATAGTATATTTTTTAAAAGTAATAAAA-TCGGGAAAAAAATACGAACAAAGGGCCGAAA
45755102 TAAGGATTTTTTTTAAATTTATT
129 TAAGGA-TTTTTTT-AATTTATT
* * * * *
45755125 TAAAAAACACAGTAAATTAATATATTTCAAACATGATGTACTAATATAATGTAAAATAATAAAAT
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAA-AAAAT
* * * *
45755190 ACT-AAAATAATATATTTTTATTGAAAGTAATAAAATCCGGG-AAAAAATATGAACAAAGAGCCG
65 A-TAAAAATAGTATA-TTTT-TTAAAAGTAATAAAAT-CGGGAAAAAAATACGAACAAAGGGCCG
45755253 AAATAAGGA-TTTTTTAATTTATT
126 AAATAAGGATTTTTTTAATTTATT
* *
45755276 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATATAAAATTAAAAAT-
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAATA
* * *
45755340 TAAAAAATAGTATATTTTTTAAAAGTAATAAAATCAGGGAAAAAAATATGAATATAGGGCCGAAA
66 T-AAAAATAGTATATTTTTTAAAAGTAATAAAATC-GGGAAAAAAATACGAACAAAGGGCCGAAA
*
45755405 TAAGGGTTTTTTTAAATTTATT
129 TAAGGATTTTTTT-AATTTATT
45755427 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAA-A
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAATA
* *
45755491 TTAGAAAATAGTATATTTTTTAAAAGTAATAAAATTCGGG-AAAAAATACAAACATAGGGCCGAA
66 -TA-AAAATAGTATATTTTTTAAAAGTAATAAAA-TCGGGAAAAAAATACGAACAAAGGGCCGAA
* *
45755555 ACAAGGGTTTTTTTAATTTATT
128 ATAAGGATTTTTTTAATTTATT
* *
45755577 TTAAAAACAGAAC-AAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAAT-----A-
1 TAAAAAACA-CACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAAT
* * *
45755635 A-AAAAATAGTAAATTTTTTAAAAGTAATAAAATTCGGGAAAAAAATATGAACATAGGGCCGAAA
65 ATAAAAATAGTATATTTTTTAAAAGTAATAAAA-TCGGGAAAAAAATACGAACAAAGGGCCGAAA
* *
45755699 TAAGGGTTTTTTAAATTTATT
129 TAAGGATTTTTTTAATTTATT
*
45755720 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGCAAAATTAAAAAAT
1 TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAA-TAAAAAAT
* * *
45755785 -TAAAAAATAATATATTTTTTAAAAGTAATAAAATCTGAGAAAAAAATACGAATAAAGGG
65 AT-AAAAATAGTATATTTTTTAAAAGTAATAAAATC-GGGAAAAAAATACGAACAAAGGG
45755844 AAAAAATACG
Statistics
Matches: 2298, Mismatches: 265, Indels: 240
0.82 0.09 0.09
Matches are distributed among these distances:
142 39 0.02
143 214 0.09
144 152 0.07
145 35 0.02
146 42 0.02
147 40 0.02
148 73 0.03
149 149 0.06
150 239 0.10
151 390 0.17
152 245 0.11
153 294 0.13
154 130 0.06
155 118 0.05
156 9 0.00
157 42 0.02
159 3 0.00
160 2 0.00
161 3 0.00
162 24 0.01
163 53 0.02
164 2 0.00
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (149 bp):
TAAAAAACACACTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAATA
TAAAAATAGTATATTTTTTAAAAGTAATAAAATCGGGAAAAAAATACGAACAAAGGGCCGAAATA
AGGATTTTTTTAATTTATT
Found at i:45756649 original size:11 final size:11
Alignment explanation
Indices: 45756633--45756684 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
45756623 ATTAATCCTT
*
45756633 TCTCAATTTTC
1 TCTCAAATTTC
*
45756644 TCTCAAATTGC
1 TCTCAAATTTC
45756655 TCTC-AATTTC
1 TCTCAAATTTC
45756665 -CTTCCAAATTTC
1 TC-T-CAAATTTC
45756677 TCTCAAAT
1 TCTCAAAT
45756685 CCATATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
9 1 0.03
10 6 0.18
11 19 0.56
12 7 0.21
13 1 0.03
ACGTcount: A:0.25, C:0.29, G:0.02, T:0.44
Consensus pattern (11 bp):
TCTCAAATTTC
Found at i:45756659 original size:22 final size:22
Alignment explanation
Indices: 45756633--45756682 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
45756623 ATTAATCCTT
*
45756633 TCTCAATTTTC-TCTCAAATTGC
1 TCTCAATTTCCTTC-CAAATTGC
*
45756655 TCTCAATTTCCTTCCAAATTTC
1 TCTCAATTTCCTTCCAAATTGC
45756677 TCTCAA
1 TCTCAA
45756683 ATCCATATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.24, C:0.30, G:0.02, T:0.44
Consensus pattern (22 bp):
TCTCAATTTCCTTCCAAATTGC
Found at i:45756706 original size:51 final size:51
Alignment explanation
Indices: 45756644--45756743 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 51
45756634 CTCAATTTTC
45756644 TCTCAAATTGCTCTCAATTTCCTTCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAAATTGCTCTCAATTTCCTTCCAAATTTCTCTCAAATCCATATTTAA
* ** * *
45756695 TCTCAATTTGCTCTCAATTTCCTTTTAAATTTCTCTTAAATCCCTATTT
1 TCTCAAATTGCTCTCAATTTCCTTCCAAATTTCTCTCAAATCCATATTT
45756744 TTAATTATTT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.26, C:0.26, G:0.02, T:0.46
Consensus pattern (51 bp):
TCTCAAATTGCTCTCAATTTCCTTCCAAATTTCTCTCAAATCCATATTTAA
Found at i:45758419 original size:509 final size:509
Alignment explanation
Indices: 45757462--45758479 Score: 2036
Period size: 509 Copynumber: 2.0 Consensus size: 509
45757452 CATCTAAGAT
45757462 GGCTGCTGAAACTCGTTGATTTTAGAGCAGTTGGTGAATTGAGTTGGGGGTCTGCTGTGTTGGCA
1 GGCTGCTGAAACTCGTTGATTTTAGAGCAGTTGGTGAATTGAGTTGGGGGTCTGCTGTGTTGGCA
45757527 ACATTATATCGGGAGATGTGCGGGGCGAAGCGACCGAGTAAAGCGAAAATCGGAGGTTGCCTGTC
66 ACATTATATCGGGAGATGTGCGGGGCGAAGCGACCGAGTAAAGCGAAAATCGGAGGTTGCCTGTC
45757592 ACTACTGCAGTCATGGGCACGGTTTTGCTTTCCATTTTTACGTCCTAGAGTGGACCACCCATATA
131 ACTACTGCAGTCATGGGCACGGTTTTGCTTTCCATTTTTACGTCCTAGAGTGGACCACCCATATA
45757657 CATTCCCACTCATAATGAGGTAAATTTTATATTAGATTTTACAATTATTACGTAGATTTTTAAAA
196 CATTCCCACTCATAATGAGGTAAATTTTATATTAGATTTTACAATTATTACGTAGATTTTTAAAA
45757722 ATAATAGTATGCTAAAAAGTTTATTTAATTAGGTGGAACCATCCAGCAAGTTATGCTCGATTACC
261 ATAATAGTATGCTAAAAAGTTTATTTAATTAGGTGGAACCATCCAGCAAGTTATGCTCGATTACC
45757787 TACCTCTCTTGAAGATATACGGCTTCTATTGGACCAACAGTCGGAAGCACAAGTAAGTAGTAAAT
326 TACCTCTCTTGAAGATATACGGCTTCTATTGGACCAACAGTCGGAAGCACAAGTAAGTAGTAAAT
45757852 AAAATAGATATTTCCATAATGAGATAGTCGATTTGTATTTAGTATTTAGTACATAACTAATATTT
391 AAAATAGATATTTCCATAATGAGATAGTCGATTTGTATTTAGTATTTAGTACATAACTAATATTT
45757917 CCATCATGGTCATATAGTTTGAATGGACACCATACGAGGATCCGGCAATTCAGA
456 CCATCATGGTCATATAGTTTGAATGGACACCATACGAGGATCCGGCAATTCAGA
45757971 GGCTGCTGAAACTCGTTGATTTTAGAGCAGTTGGTGAATTGAGTTGGGGGTCTGCTGTGTTGGCA
1 GGCTGCTGAAACTCGTTGATTTTAGAGCAGTTGGTGAATTGAGTTGGGGGTCTGCTGTGTTGGCA
45758036 ACATTATATCGGGAGATGTGCGGGGCGAAGCGACCGAGTAAAGCGAAAATCGGAGGTTGCCTGTC
66 ACATTATATCGGGAGATGTGCGGGGCGAAGCGACCGAGTAAAGCGAAAATCGGAGGTTGCCTGTC
45758101 ACTACTGCAGTCATGGGCACGGTTTTGCTTTCCATTTTTACGTCCTAGAGTGGACCACCCATATA
131 ACTACTGCAGTCATGGGCACGGTTTTGCTTTCCATTTTTACGTCCTAGAGTGGACCACCCATATA
45758166 CATTCCCACTCATAATGAGGTAAATTTTATATTAGATTTTACAATTATTACGTAGATTTTTAAAA
196 CATTCCCACTCATAATGAGGTAAATTTTATATTAGATTTTACAATTATTACGTAGATTTTTAAAA
45758231 ATAATAGTATGCTAAAAAGTTTATTTAATTAGGTGGAACCATCCAGCAAGTTATGCTCGATTACC
261 ATAATAGTATGCTAAAAAGTTTATTTAATTAGGTGGAACCATCCAGCAAGTTATGCTCGATTACC
45758296 TACCTCTCTTGAAGATATACGGCTTCTATTGGACCAACAGTCGGAAGCACAAGTAAGTAGTAAAT
326 TACCTCTCTTGAAGATATACGGCTTCTATTGGACCAACAGTCGGAAGCACAAGTAAGTAGTAAAT
45758361 AAAATAGATATTTCCATAATGAGATAGTCGATTTGTATTTAGTATTTAGTACATAACTAATATTT
391 AAAATAGATATTTCCATAATGAGATAGTCGATTTGTATTTAGTATTTAGTACATAACTAATATTT
45758426 CCATCATGGTCATATAGTTTGAATGGACACCATACGAGGATCCGGCAATTCAGA
456 CCATCATGGTCATATAGTTTGAATGGACACCATACGAGGATCCGGCAATTCAGA
45758480 CAGTAATTCT
Statistics
Matches: 509, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
509 509 1.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (509 bp):
GGCTGCTGAAACTCGTTGATTTTAGAGCAGTTGGTGAATTGAGTTGGGGGTCTGCTGTGTTGGCA
ACATTATATCGGGAGATGTGCGGGGCGAAGCGACCGAGTAAAGCGAAAATCGGAGGTTGCCTGTC
ACTACTGCAGTCATGGGCACGGTTTTGCTTTCCATTTTTACGTCCTAGAGTGGACCACCCATATA
CATTCCCACTCATAATGAGGTAAATTTTATATTAGATTTTACAATTATTACGTAGATTTTTAAAA
ATAATAGTATGCTAAAAAGTTTATTTAATTAGGTGGAACCATCCAGCAAGTTATGCTCGATTACC
TACCTCTCTTGAAGATATACGGCTTCTATTGGACCAACAGTCGGAAGCACAAGTAAGTAGTAAAT
AAAATAGATATTTCCATAATGAGATAGTCGATTTGTATTTAGTATTTAGTACATAACTAATATTT
CCATCATGGTCATATAGTTTGAATGGACACCATACGAGGATCCGGCAATTCAGA
Found at i:45759569 original size:49 final size:49
Alignment explanation
Indices: 45759516--45759636 Score: 233
Period size: 49 Copynumber: 2.5 Consensus size: 49
45759506 GTTTATATTA
45759516 ATGTAATAAAATACAAAATAGTTTAATTTGAATATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTAATTTGAATATTTTGATATTATTTG
*
45759565 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTAATTTGAATATTTTGATATTATTTG
45759614 ATGTAATAAAATACAAAATAGTT
1 ATGTAATAAAATACAAAATAGTT
45759637 AATATTCTTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.45, C:0.02, G:0.10, T:0.43
Consensus pattern (49 bp):
ATGTAATAAAATACAAAATAGTTTAATTTGAATATTTTGATATTATTTG
Found at i:45764179 original size:42 final size:42
Alignment explanation
Indices: 45764007--45764187 Score: 138
Period size: 42 Copynumber: 4.3 Consensus size: 42
45763997 TCTTCTACAA
* *
45764007 TTCATAGAGATAAGATCTGATGTTAATCCGCTCCACTGCAAC
1 TTCAGAGAGATAAGATCTGATTTTAATCCGCTCCACTGCAAC
* ** *
45764049 TTCAG-GAAGATAGGAT-T-ATTTTCTTCAATTTGTTCCACTGCAAC
1 TTCAGAG-AGATAAGATCTGA--TT-TT-AATCCGCTCCACTGCAAC
* *** * **
45764093 TTCAGGGAGATAAGA-CTGGA-TGCGATCTGCTCTTCTGCAAC
1 TTCAGAGAGATAAGATCT-GATTTTAATCCGCTCCACTGCAAC
*
45764134 TTCAGAGAGATAAGATCTGATTTTAATCCGCTCAACTGCAAC
1 TTCAGAGAGATAAGATCTGATTTTAATCCGCTCCACTGCAAC
*
45764176 TTCAGGGAGATA
1 TTCAGAGAGATA
45764188 GAATTATTTT
Statistics
Matches: 106, Mismatches: 22, Indels: 22
0.71 0.15 0.15
Matches are distributed among these distances:
40 1 0.01
41 31 0.29
42 41 0.39
43 3 0.03
44 28 0.26
45 1 0.01
46 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (42 bp):
TTCAGAGAGATAAGATCTGATTTTAATCCGCTCCACTGCAAC
Found at i:45764671 original size:45 final size:45
Alignment explanation
Indices: 45764621--45764759 Score: 131
Period size: 45 Copynumber: 3.1 Consensus size: 45
45764611 CGATCTGCTT
* *
45764621 CGCTGCCAGTACAGAAAGACAAGATCTGCCATTTTCAACCTACTC
1 CGCTGCCAGTACAGGAAGACAAGATCTGCTATTTTCAACCTACTC
* * * * * * * *
45764666 CGCTG-CTGCT-CAGGGAGACAAG-GCTGGTATCTTCGATCTACTT
1 CGCTGCCAG-TACAGGAAGACAAGATCTGCTATTTTCAACCTACTC
* *
45764709 CGCTGTCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTC
1 CGCTGCCAGTACAGGAAGACAAGATCTGCTATTTTCAACCTACTC
*
45764754 CACTGC
1 CGCTGC
45764760 TGCTCAGGGA
Statistics
Matches: 69, Mismatches: 21, Indels: 8
0.70 0.21 0.08
Matches are distributed among these distances:
43 20 0.29
44 24 0.35
45 25 0.36
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (45 bp):
CGCTGCCAGTACAGGAAGACAAGATCTGCTATTTTCAACCTACTC
Found at i:45764686 original size:44 final size:44
Alignment explanation
Indices: 45764637--45764771 Score: 141
Period size: 44 Copynumber: 3.1 Consensus size: 44
45764627 CAGTACAGAA
*
45764637 AGACAAGATCTGCCATTTTCAACCTACTCCGCTGCTGCTCAGGG
1 AGACAAGATCTGCTATTTTCAACCTACTCCGCTGCTGCTCAGGG
* * * * * * *
45764681 AGACAAG-GCTGGTATCTTCGATCTACTTCGCTG-T-CAATACAGGA
1 AGACAAGATCTGCTATTTTCAACCTACTCCGCTGCTGC--T-CAGGG
*
45764725 AGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGG
1 AGACAAGATCTGCTATTTTCAACCTACTCCGCTGCTGCTCAGGG
45764769 AGA
1 AGA
45764772 TAAGGCTGAA
Statistics
Matches: 69, Mismatches: 16, Indels: 12
0.71 0.16 0.12
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 20 0.29
44 25 0.36
45 20 0.29
46 1 0.01
47 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (44 bp):
AGACAAGATCTGCTATTTTCAACCTACTCCGCTGCTGCTCAGGG
Found at i:45764710 original size:88 final size:88
Alignment explanation
Indices: 45764607--45764779 Score: 283
Period size: 88 Copynumber: 2.0 Consensus size: 88
45764597 AAGACTAGTG
* * *
45764607 TCTTCGATCTGCTTCGCTGCCAGTACAGAAAGACAAGATCTGCCATTTTCAACCTACTCCGCTGC
1 TCTTCGATCTACTTCGCTGCCAATACAGAAAGACAAGATCTGCCATTTTCAACCTACTCCACTGC
45764672 TGCTCAGGGAGACAAGGCTGGTA
66 TGCTCAGGGAGACAAGGCTGGTA
* * *
45764695 TCTTCGATCTACTTCGCTGTCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
1 TCTTCGATCTACTTCGCTGCCAATACAGAAAGACAAGATCTGCCATTTTCAACCTACTCCACTGC
*
45764760 TGCTCAGGGAGATAAGGCTG
66 TGCTCAGGGAGACAAGGCTG
45764780 AAGTTTCACC
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 78 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (88 bp):
TCTTCGATCTACTTCGCTGCCAATACAGAAAGACAAGATCTGCCATTTTCAACCTACTCCACTGC
TGCTCAGGGAGACAAGGCTGGTA
Found at i:45766026 original size:8 final size:8
Alignment explanation
Indices: 45766015--45766067 Score: 65
Period size: 8 Copynumber: 6.5 Consensus size: 8
45766005 ATTTTTACTC
45766015 TTTTCATTT
1 TTTTCA-TT
45766024 TTTTCA-T
1 TTTTCATT
45766031 TTTT-ATT
1 TTTTCATT
45766038 TTTTCATT
1 TTTTCATT
45766046 TTTTCATT
1 TTTTCATT
45766054 TCATTTCATT
1 T--TTTCATT
45766064 TTTT
1 TTTT
45766068 TACGACTCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
6 1 0.03
7 10 0.25
8 15 0.38
9 6 0.15
10 8 0.20
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTTCATT
Found at i:45766039 original size:14 final size:14
Alignment explanation
Indices: 45766022--45766048 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
45766012 CTCTTTTCAT
45766022 TTTTTTCATTTTTA
1 TTTTTTCATTTTTA
45766036 TTTTTTCATTTTT
1 TTTTTTCATTTTT
45766049 TCATTTCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.11, C:0.07, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTTTCATTTTTA
Found at i:45766533 original size:13 final size:13
Alignment explanation
Indices: 45766529--45766557 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
45766519 TTGTTTTTTG
45766529 TTTTTTGTTCTTC
1 TTTTTTGTTCTTC
45766542 TTTTTTGTTCTT-
1 TTTTTTGTTCTTC
45766554 TTTT
1 TTTT
45766558 CCTTTTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.25
13 12 0.75
ACGTcount: A:0.00, C:0.10, G:0.07, T:0.83
Consensus pattern (13 bp):
TTTTTTGTTCTTC
Found at i:45772880 original size:33 final size:33
Alignment explanation
Indices: 45772820--45772882 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
45772810 TGTAGGTATA
* * *
45772820 ATAATAATAATAATATATAATATAATAATAATT
1 ATAATAATAATAACAAATAATACAATAATAATT
*
45772853 ATAATAATAATAACAAATGATACAATAATA
1 ATAATAATAATAACAAATAATACAATAATA
45772883 GTGAAAAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (33 bp):
ATAATAATAATAACAAATAATACAATAATAATT
Found at i:45772882 original size:3 final size:3
Alignment explanation
Indices: 45772817--45772865 Score: 73
Period size: 3 Copynumber: 16.3 Consensus size: 3
45772807 ATATGTAGGT
*
45772817 ATA ATA ATA ATA ATA ATA TATA AT- ATA ATA ATA ATT ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
45772862 ATA A
1 ATA A
45772866 CAAATGATAC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.88
4 3 0.07
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:45773479 original size:14 final size:14
Alignment explanation
Indices: 45773457--45773491 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
45773447 TCTCCTTCTC
*
45773457 TTTTCTTTTTGTTT
1 TTTTTTTTTTGTTT
45773471 TTTTTTTTTTGTTT
1 TTTTTTTTTTGTTT
45773485 TGTTTTT
1 T-TTTTT
45773492 AAGAAACAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.00, C:0.03, G:0.09, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTTGTTT
Found at i:45774986 original size:22 final size:22
Alignment explanation
Indices: 45774961--45775002 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
45774951 TAATTAGATA
45774961 AATT-AATAAATATAAGTTTTTT
1 AATTAAATAAATATAA-TTTTTT
45774983 AATTAAATAAATATAATTTT
1 AATTAAATAAATATAATTTT
45775003 ATTTTAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
AATTAAATAAATATAATTTTTT
Found at i:45775009 original size:21 final size:22
Alignment explanation
Indices: 45774965--45775012 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
45774955 TAGATAAATT
45774965 AATAAATATAAGTTTTTTAATTA
1 AATAAATATAAGTTTTTT-ATTA
45774988 AATAAATATAA-TTTTATT-TTA
1 AATAAATATAAGTTTT-TTATTA
45775009 AATA
1 AATA
45775013 TGATAATAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.29
22 4 0.17
23 13 0.54
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
AATAAATATAAGTTTTTTATTA
Found at i:45778240 original size:69 final size:69
Alignment explanation
Indices: 45778162--45780357 Score: 4333
Period size: 69 Copynumber: 31.9 Consensus size: 69
45778152 TAAAGTGAAT
45778162 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45778227 TAGC
66 TAGC
45778231 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45778296 TAGC
66 TAGC
45778300 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45778365 TAGC
66 TAGC
45778369 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45778434 TAGC
66 TAGC
45778438 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45778503 TAGC
66 TAGC
45778507 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45778572 TAGC
66 TAGC
45778576 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45778641 TAGC
66 TAGC
45778645 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45778710 TAGC
66 TAGC
45778714 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45778779 TAGC
66 TAGC
45778783 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45778848 TAGC
66 TAGC
45778852 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45778917 TAGC
66 TAGC
45778921 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45778986 TAGC
66 TAGC
45778990 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45779055 TAGC
66 TAGC
45779059 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45779124 TAGC
66 TAGC
45779128 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45779193 TAGC
66 TAGC
45779197 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45779262 TAGC
66 TAGC
45779266 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45779331 TAGC
66 TAGC
45779335 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45779400 TAGC
66 TAGC
45779404 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45779469 TAGC
66 TAGC
45779473 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45779538 TAGC
66 TAGC
45779542 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45779607 TAGC
66 TAGC
45779611 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45779676 TAGC
66 TAGC
45779680 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45779745 TAGC
66 TAGC
45779749 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45779814 TAGC
66 TAGC
45779818 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45779883 TAGC
66 TAGC
45779887 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45779952 TAGC
66 TAGC
45779956 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45780021 TAGC
66 TAGC
45780025 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45780090 TAGC
66 TAGC
45780094 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45780159 TAGC
66 TAGC
45780163 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45780228 TAGC
66 TAGC
45780232 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
45780297 TAGC
66 TAGC
* * * * *
45780301 CACTTTAATATTAAATTAATAAAATA-CTATTAAGATAAGTATTAAATT-AATTTAATA
1 CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATA
45780358 GTAAATCAAT
Statistics
Matches: 2122, Mismatches: 5, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
67 9 0.00
68 18 0.01
69 2095 0.99
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.41
Consensus pattern (69 bp):
CACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAGA
TAGC
Found at i:45783010 original size:21 final size:21
Alignment explanation
Indices: 45782981--45783021 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
45782971 CTTGTTTGGT
*
45782981 GAGAAATTTGAGAGAAAATGG
1 GAGAAATTTAAGAGAAAATGG
* *
45783002 GAGAGATTTAAGGGAAAATG
1 GAGAAATTTAAGAGAAAATG
45783022 ATAAAAGAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.34, T:0.20
Consensus pattern (21 bp):
GAGAAATTTAAGAGAAAATGG
Found at i:45787499 original size:45 final size:46
Alignment explanation
Indices: 45787309--45787561 Score: 424
Period size: 46 Copynumber: 5.6 Consensus size: 46
45787299 TTTGAGTACT
45787309 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
45787355 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
45787401 TCTGATCAAGTAACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
45787447 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
45787492 TTTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
45787537 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
45787562 ATCATATGTA
Statistics
Matches: 199, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
43 12 0.06
44 5 0.03
45 62 0.31
46 120 0.60
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:45800007 original size:9 final size:9
Alignment explanation
Indices: 45799993--45800029 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
45799983 TATAGTTTGA
45799993 TATTCGAAT
1 TATTCGAAT
45800002 TATTCGAAT
1 TATTCGAAT
*
45800011 TATTCGAGT
1 TATTCGAAT
45800020 TATTCGAAT
1 TATTCGAAT
45800029 T
1 T
45800030 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:45801576 original size:19 final size:19
Alignment explanation
Indices: 45801552--45801590 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
45801542 ACACTGTTAA
45801552 AATTCTCTGTTACATTGCT
1 AATTCTCTGTTACATTGCT
45801571 AATTCTCTGTTACATTGCT
1 AATTCTCTGTTACATTGCT
45801590 A
1 A
45801591 TTAAGTGTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.46
Consensus pattern (19 bp):
AATTCTCTGTTACATTGCT
Found at i:45804110 original size:15 final size:15
Alignment explanation
Indices: 45804087--45804123 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
45804077 TTCTTCTCAA
*
45804087 AAGCATTCCTAAATT
1 AAGCGTTCCTAAATT
45804102 AAGCGTTCCTAAATT
1 AAGCGTTCCTAAATT
45804117 AAGCGTT
1 AAGCGTT
45804124 AATCTGGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (15 bp):
AAGCGTTCCTAAATT
Found at i:45804868 original size:9 final size:9
Alignment explanation
Indices: 45804826--45804871 Score: 51
Period size: 8 Copynumber: 5.1 Consensus size: 9
45804816 TTTTTAAACC
45804826 TTTAAAAT-
1 TTTAAAATA
45804834 TTTAAAAT-
1 TTTAAAATA
*
45804842 TTTAAAAAA
1 TTTAAAATA
45804851 TTTAAAAAATA
1 TTT--AAAATA
45804862 TTTAAAATA
1 TTTAAAATA
45804871 T
1 T
45804872 AAATATGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
8 15 0.45
9 10 0.30
11 8 0.24
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
TTTAAAATA
Found at i:45806660 original size:16 final size:15
Alignment explanation
Indices: 45806639--45806668 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
45806629 CAAACATGCT
45806639 TTAACACATTATCAAA
1 TTAACACATT-TCAAA
45806655 TTAACACATTTCAA
1 TTAACACATTTCAA
45806669 TAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (15 bp):
TTAACACATTTCAAA
Found at i:45810762 original size:5 final size:5
Alignment explanation
Indices: 45810754--45810780 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
45810744 CTTTTTAACC
45810754 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
45810781 AAATAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:45812641 original size:21 final size:19
Alignment explanation
Indices: 45812609--45812650 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 19
45812599 ATTCATTTTC
45812609 TATTTATTGTAAATTGGAAAA
1 TATTTATTGTAAA-T-GAAAA
45812630 TATTT-TTGGTAAATGAAAA
1 TATTTATT-GTAAATGAAAA
45812649 TA
1 TA
45812651 GAAATTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
19 7 0.35
20 3 0.15
21 10 0.50
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (19 bp):
TATTTATTGTAAATGAAAA
Found at i:45813676 original size:15 final size:15
Alignment explanation
Indices: 45813656--45813690 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
45813646 TATATATGTC
45813656 ACAATAATAAATACA
1 ACAATAATAAATACA
*
45813671 ACAATAATAAATATA
1 ACAATAATAAATACA
45813686 ACAAT
1 ACAAT
45813691 GGCATAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.66, C:0.11, G:0.00, T:0.23
Consensus pattern (15 bp):
ACAATAATAAATACA
Found at i:45813739 original size:23 final size:22
Alignment explanation
Indices: 45813707--45813749 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
45813697 GAAATAATGT
*
45813707 ATATAAATAAATAAATGAAACTA
1 ATATAAATAAAAAAAT-AAACTA
*
45813730 ATATACATAAAAAAATAAAC
1 ATATAAATAAAAAAATAAAC
45813750 AATGACATGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.23
Consensus pattern (22 bp):
ATATAAATAAAAAAATAAACTA
Found at i:45814144 original size:23 final size:22
Alignment explanation
Indices: 45814110--45814153 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
45814100 ATACATGTAA
45814110 AATATATCAAAAATAATTAAAT
1 AATATATCAAAAATAATTAAAT
*
45814132 AATATTATCAAAATTAATTAAA
1 AATA-TATCAAAAATAATTAAA
45814154 AAAATAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (22 bp):
AATATATCAAAAATAATTAAAT
Found at i:45815986 original size:2 final size:2
Alignment explanation
Indices: 45815944--45815969 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
45815934 AGGTCCACCC
45815944 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
45815970 TAATTTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45816036 original size:15 final size:15
Alignment explanation
Indices: 45815985--45816037 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 15
45815975 TAATAAATAT
45815985 ATTTATATTATTTTTA
1 ATTTATA-TATTTTTA
*
45816001 ATTTA-ATATTTAATA
1 ATTTATATATTT-TTA
*
45816016 ATTTTATATATTTTTT
1 A-TTTATATATTTTTA
45816032 ATTTAT
1 ATTTAT
45816038 TAAATTTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
14 5 0.16
15 9 0.29
16 11 0.35
17 6 0.19
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATTTATATATTTTTA
Found at i:45816154 original size:16 final size:17
Alignment explanation
Indices: 45816122--45816154 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
45816112 TGTTATAAAT
45816122 TTACATAATGCATAAAAA
1 TTACATAAT-CATAAAAA
45816140 TTACATAAT-ATAAAA
1 TTACATAATCATAAAA
45816155 CAAGCCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.58, C:0.09, G:0.03, T:0.30
Consensus pattern (17 bp):
TTACATAATCATAAAAA
Found at i:45816656 original size:31 final size:29
Alignment explanation
Indices: 45816587--45816667 Score: 74
Period size: 31 Copynumber: 2.7 Consensus size: 29
45816577 AATAATAAAT
*
45816587 TATTTTATTAA-ATATAAATAATTAAATATG
1 TATTTTAATAATAT-TAAA-AATTAAATATG
*
45816617 TATGTTTAATAATATTAAAAATTATAATATT
1 TAT-TTTAATAATATTAAAAATTA-AATATG
* *
45816648 TGATTTTAATATTTTTAAAA
1 T-ATTTTAATAATATTAAAA
45816668 TTTTCAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
30 8 0.19
31 31 0.72
32 4 0.09
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (29 bp):
TATTTTAATAATATTAAAAATTAAATATG
Found at i:45827136 original size:13 final size:14
Alignment explanation
Indices: 45827118--45827146 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
45827108 GATGCTTATG
45827118 TTTAATTCA-TGAT
1 TTTAATTCATTGAT
45827131 TTTAATTCATTGAT
1 TTTAATTCATTGAT
45827145 TT
1 TT
45827147 CATTGTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (14 bp):
TTTAATTCATTGAT
Found at i:45834934 original size:16 final size:16
Alignment explanation
Indices: 45834913--45834943 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
45834903 CACATTAAAC
45834913 TTATATTAAAAAACAT
1 TTATATTAAAAAACAT
45834929 TTATATTAAAAAACA
1 TTATATTAAAAAACA
45834944 CTACCACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (16 bp):
TTATATTAAAAAACAT
Found at i:45834974 original size:41 final size:38
Alignment explanation
Indices: 45834929--45835016 Score: 106
Period size: 37 Copynumber: 2.3 Consensus size: 38
45834919 TAAAAAACAT
* *
45834929 TTATATTAAAAAACACTACCACAAATATAATAAATGTTTTA
1 TTATATTAAAAAA-A-TACAACAAATATAA-AAATATTTTA
*
45834970 TTATATT-AAAAAATACAATAAATATAAAAATATTTTA
1 TTATATTAAAAAAATACAACAAATATAAAAATATTTTA
*
45835007 TTGTATTAAA
1 TTATATTAAA
45835017 TATAATTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
37 15 0.36
38 14 0.33
39 1 0.02
40 5 0.12
41 7 0.17
ACGTcount: A:0.53, C:0.07, G:0.02, T:0.38
Consensus pattern (38 bp):
TTATATTAAAAAAATACAACAAATATAAAAATATTTTA
Found at i:45839858 original size:17 final size:17
Alignment explanation
Indices: 45839822--45839860 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
45839812 ATCATCATGC
*
45839822 TAAAATAAATTTTTTAT
1 TAAAATAAATTTTGTAT
45839839 TAAAATAATATTTTGT-T
1 TAAAATAA-ATTTTGTAT
45839856 TAAAA
1 TAAAA
45839861 GAATTCACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
TAAAATAAATTTTGTAT
Found at i:45840225 original size:13 final size:14
Alignment explanation
Indices: 45840200--45840236 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 14
45840190 TGATTTATGT
45840200 AAATATGTTGAAAA
1 AAATATGTTGAAAA
45840214 AAATAT-TTG-AAA
1 AAATATGTTGAAAA
*
45840226 AATTATGTTGA
1 AAATATGTTGA
45840237 TTTTCTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
12 8 0.40
13 6 0.30
14 6 0.30
ACGTcount: A:0.51, C:0.00, G:0.14, T:0.35
Consensus pattern (14 bp):
AAATATGTTGAAAA
Found at i:45850078 original size:16 final size:17
Alignment explanation
Indices: 45850057--45850088 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
45850047 AAATATGCAA
45850057 TCACATAA-TTCATATT
1 TCACATAACTTCATATT
45850073 TCACATAACTTCATAT
1 TCACATAACTTCATAT
45850089 CATCAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TCACATAACTTCATATT
Found at i:45850348 original size:41 final size:42
Alignment explanation
Indices: 45850250--45850362 Score: 140
Period size: 41 Copynumber: 2.7 Consensus size: 42
45850240 GGCCCGTACA
* ** *
45850250 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACA-CAAATCAAATATCG
*
45850293 ATGCCACTGTCCCAGACAGGGTCTTACACAAATCAAATA-CG
1 ATGCCAATGTCCCAGACAGGGTCTTACACAAATCAAATATCG
*
45850334 ATGCCAATGTCCCAGACATGGTCTTACAC
1 ATGCCAATGTCCCAGACAGGGTCTTACAC
45850363 GTATACACAA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
41 29 0.47
42 8 0.13
43 24 0.39
44 1 0.02
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACAAATCAAATATCG
Found at i:45850399 original size:43 final size:42
Alignment explanation
Indices: 45850250--45850406 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 42
45850240 GGCCCGTACA
*
45850250 ATGCCAACGTCCCAGACGTGGTCTTACATGTA-ATCAC-ATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTATA-CACAATAT
** *
45850291 CGATGCC-ACTGTCCCAGACAG-GGTCTTACACAAAT-CA-AATACG
1 --ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTATACACAATA-T
* *
45850334 ATGCCAATGTCCCAGACATGGTCTTACACGTATACACAAGTAT
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTATACACAA-TAT
*
45850377 ATGCCAACGTCCCAAACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
45850407 AAAATACATA
Statistics
Matches: 92, Mismatches: 12, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
41 26 0.28
42 10 0.11
43 53 0.58
44 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTATACACAATAT
Found at i:45850400 original size:84 final size:83
Alignment explanation
Indices: 45850250--45850405 Score: 194
Period size: 84 Copynumber: 1.9 Consensus size: 83
45850240 GGCCCGTACA
* * *
45850250 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATC-ATGCCACTGTCCCAAACAGGGT
45850315 CTTACACAAATCAAATACG
65 CTTACACAAATCAAATACG
*
45850334 ATGCCAATGTCCCAGACATGGTCTTACACGT-ATACACAAGTAT-ATGCCAAC-GTCCCAAAC-G
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAT-CAC-A-TATCATGCC-ACTGTCCCAAACAG
45850395 TGGTCTTACAC
62 -GGTCTTACAC
45850406 GAAAATACAT
Statistics
Matches: 63, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
83 3 0.05
84 54 0.86
85 3 0.05
86 3 0.05
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (83 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCATGCCACTGTCCCAAACAGGGTC
TTACACAAATCAAATACG
Found at i:45857826 original size:84 final size:84
Alignment explanation
Indices: 45857676--45857831 Score: 212
Period size: 84 Copynumber: 1.9 Consensus size: 84
45857666 GGCTCGTACA
* * *
45857676 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCACTGTCCCAAACAGGGT
45857741 CTTACACAAATCAAATACG
66 CTTACACAAATCAAATACG
*
45857760 ATGCCAATGTCCCAGACATGGTCTTACACGT-ATACACA-AGTCGATGCCAAC-GTCCCAAAC-G
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAT-CACATA-TCGATGCC-ACTGTCCCAAACAG
45857821 TGGTCTTACAC
63 -GGTCTTACAC
45857832 GAAAATACAT
Statistics
Matches: 64, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
83 4 0.06
84 58 0.91
85 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCACTGTCCCAAACAGGGT
CTTACACAAATCAAATACG
Found at i:45857831 original size:43 final size:42
Alignment explanation
Indices: 45857676--45857832 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 42
45857666 GGCTCGTACA
*
45857676 ATGCCAACGTCCCAGACGTGGTCTTACATGTA-ATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTATA-CACA-ATCG
**
45857719 ATGCC-ACTGTCCCAGACAG-GGTCTTACACAAAT-CA-AATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTATACACAAT-CG
* *
45857760 ATGCCAATGTCCCAGACATGGTCTTACACGTATACACAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTATACACAA-TCG
*
45857803 ATGCCAACGTCCCAAACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
45857833 AAAATACATA
Statistics
Matches: 95, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
40 2 0.02
41 29 0.31
42 7 0.07
43 55 0.58
44 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTATACACAATCG
Found at i:45859894 original size:15 final size:15
Alignment explanation
Indices: 45859874--45859909 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
45859864 TAAATATAAG
45859874 TATTTTGTTAAGCAA
1 TATTTTGTTAAGCAA
45859889 TATTTTGTTAAGCAA
1 TATTTTGTTAAGCAA
45859904 T-TTTTG
1 TATTTTG
45859910 ATGATTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.53
Consensus pattern (15 bp):
TATTTTGTTAAGCAA
Found at i:45870638 original size:15 final size:15
Alignment explanation
Indices: 45870618--45870653 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
45870608 GCCCTTGTAG
*
45870618 TCGTTGGAAAAGTTA
1 TCGTTGGAAAAATTA
45870633 TCGTTGGAAAAATTA
1 TCGTTGGAAAAATTA
45870648 TCGTTG
1 TCGTTG
45870654 AAAGGAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (15 bp):
TCGTTGGAAAAATTA
Found at i:45875342 original size:21 final size:22
Alignment explanation
Indices: 45875318--45875366 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
45875308 ACTAGATAAA
45875318 TTGTAGAAGTGG-AAAACATCG
1 TTGTAGAAGTGGAAAAACATCG
*
45875339 TTGTAAAAGTGGAAAAACATCG
1 TTGTAGAAGTGGAAAAACATCG
45875361 TTGTAG
1 TTGTAG
45875367 TGTTTGTAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 11 0.44
22 14 0.56
ACGTcount: A:0.39, C:0.08, G:0.27, T:0.27
Consensus pattern (22 bp):
TTGTAGAAGTGGAAAAACATCG
Found at i:45875718 original size:13 final size:13
Alignment explanation
Indices: 45875700--45875724 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45875690 TTTTAATAAA
45875700 ATTTTAGGTTTGT
1 ATTTTAGGTTTGT
45875713 ATTTTAGGTTTG
1 ATTTTAGGTTTG
45875725 GGTTCGGTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.24, T:0.60
Consensus pattern (13 bp):
ATTTTAGGTTTGT
Found at i:45881696 original size:11 final size:11
Alignment explanation
Indices: 45881666--45881698 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
45881656 ATTTTTCCTA
45881666 GGATGTGAATT
1 GGATGTGAATT
45881677 GGATG-GAATT
1 GGATGTGAATT
45881687 GGATGTGAATT
1 GGATGTGAATT
45881698 G
1 G
45881699 TATTAAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.27, C:0.00, G:0.39, T:0.33
Consensus pattern (11 bp):
GGATGTGAATT
Found at i:45882152 original size:26 final size:26
Alignment explanation
Indices: 45882123--45882203 Score: 67
Period size: 26 Copynumber: 3.1 Consensus size: 26
45882113 ATACCGCAGT
*
45882123 TCTTTGTGAGCGTC-TCG-TTATATGGC
1 TCTTTGTGAGCGTCAT-GATTA-AAGGC
* *
45882149 TCTTTGTAAGCTTCATGATTAAAGGC
1 TCTTTGTGAGCGTCATGATTAAAGGC
* * * *
45882175 TCTTTGTGAGCTTCCTAATTAATGGC
1 TCTTTGTGAGCGTCATGATTAAAGGC
45882201 TCT
1 TCT
45882204 CCGAAGCTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
26 42 0.91
27 4 0.09
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.42
Consensus pattern (26 bp):
TCTTTGTGAGCGTCATGATTAAAGGC
Found at i:45888921 original size:26 final size:25
Alignment explanation
Indices: 45888880--45889033 Score: 136
Period size: 26 Copynumber: 6.1 Consensus size: 25
45888870 ATACCACAAT
45888880 TCTTTGTGAG-TGTCCCGTTATATGGC
1 TCTTTGTGAGCT-TCCCGTTA-ATGGC
*
45888906 TCTTTGTGAGCTTCCCGATTAAAGGC
1 TCTTTGTGAGCTTCCCG-TTAATGGC
**
45888932 TCTTTGTGAGCTTCTTGATTAATGGC
1 TCTTTGTGAGCTTCCCG-TTAATGGC
* * *
45888958 TCTTCG-AAGCTTCCCGATAATGGC
1 TCTTTGTGAGCTTCCCGTTAATGGC
** * *
45888982 TCGCT-TGAACTTCCCGATATATGGC
1 TCTTTGTGAGCTTCCCGTTA-ATGGC
*
45889007 TATTTG-GAGCTTCCCGTTAATGGC
1 TCTTTGTGAGCTTCCCGTTAATGGC
45889031 TCT
1 TCT
45889034 CTGAAGCTAC
Statistics
Matches: 103, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
24 27 0.26
25 25 0.24
26 47 0.46
27 4 0.04
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (25 bp):
TCTTTGTGAGCTTCCCGTTAATGGC
Found at i:45888981 original size:24 final size:24
Alignment explanation
Indices: 45888914--45889041 Score: 91
Period size: 24 Copynumber: 5.2 Consensus size: 24
45888904 GCTCTTTGTG
* * *
45888914 AGCTTCCCGATTAAAGGCTCTTTGTG
1 AGCTTCCCGA-TAATGGCTCTTCG-A
**
45888940 AGCTTCTTGATTAATGGCTCTTCGA
1 AGCTTCCCGA-TAATGGCTCTTCGA
45888965 AGCTTCCCGATAATGGCTCGCTT-GA
1 AGCTTCCCGATAATGGCT--CTTCGA
* * *
45888990 A-CTTCCCGATATATGGCTATTTGG
1 AGCTTCCCGATA-ATGGCTCTTCGA
*
45889014 AGCTTCCCGTTAATGGCTC-TCTGA
1 AGCTTCCCGATAATGGCTCTTC-GA
45889038 AGCT
1 AGCT
45889042 ACCTGTTATT
Statistics
Matches: 83, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
23 3 0.04
24 31 0.37
25 26 0.31
26 23 0.28
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (24 bp):
AGCTTCCCGATAATGGCTCTTCGA
Found at i:45889018 original size:49 final size:50
Alignment explanation
Indices: 45888892--45889032 Score: 142
Period size: 49 Copynumber: 2.8 Consensus size: 50
45888882 TTTGTGAGTG
* * ** *
45888892 TCCCGTTATATGGCTCTTTGTGAGCTTCCCGATTAAAGGCTCTTTGTGAGCT
1 TCCCGATATATGGCTCTTTG-GAGCTTCCCGA-TAATGGCTCGCTGTGAACT
** * *
45888944 TCTTGAT-TAATGGCTCTTCGAAGCTTCCCGATAATGGCTCGCT-TGAACT
1 TCCCGATAT-ATGGCTCTTTGGAGCTTCCCGATAATGGCTCGCTGTGAACT
* *
45888993 TCCCGATATATGGCTATTTGGAGCTTCCCGTTAATGGCTC
1 TCCCGATATATGGCTCTTTGGAGCTTCCCGATAATGGCTC
45889033 TCTGAAGCTA
Statistics
Matches: 72, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
49 37 0.51
50 10 0.14
51 11 0.15
52 14 0.19
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (50 bp):
TCCCGATATATGGCTCTTTGGAGCTTCCCGATAATGGCTCGCTGTGAACT
Found at i:45889031 original size:73 final size:72
Alignment explanation
Indices: 45888950--45889097 Score: 167
Period size: 73 Copynumber: 2.0 Consensus size: 72
45888940 AGCTTCTTGA
* *
45888950 TTAATGGCTCT-TCGAAGCTTCCCGATAATGGCTCGCTTGA-ACTTCCCGATATATGGCTATT-T
1 TTAATGGCTCTCT-GAAGCTACCCGATAATGGCTCGCATGATA-TTCCCGAT-TATGGCTATTAT
*
45889012 GGAGCTTCCCG
63 -GAGCTTACCG
* * * * *
45889023 TTAATGGCTCTCTGAAGCTACCTGTTATTGGTTCGCATGATATTCCCGATTATGGCTCTTATGAG
1 TTAATGGCTCTCTGAAGCTACCCGATAATGGCTCGCATGATATTCCCGATTATGGCTATTATGAG
45889088 CTTACCG
66 CTTACCG
45889095 TTA
1 TTA
45889098 GACAGCCCAG
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
72 21 0.33
73 41 0.64
74 2 0.03
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (72 bp):
TTAATGGCTCTCTGAAGCTACCCGATAATGGCTCGCATGATATTCCCGATTATGGCTATTATGAG
CTTACCG
Found at i:45889893 original size:13 final size:13
Alignment explanation
Indices: 45889875--45889915 Score: 82
Period size: 13 Copynumber: 3.2 Consensus size: 13
45889865 AAGTCTAGTA
45889875 TATATATTAAGTC
1 TATATATTAAGTC
45889888 TATATATTAAGTC
1 TATATATTAAGTC
45889901 TATATATTAAGTC
1 TATATATTAAGTC
45889914 TA
1 TA
45889916 GTATGCATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (13 bp):
TATATATTAAGTC
Found at i:45906263 original size:32 final size:32
Alignment explanation
Indices: 45906217--45906289 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
45906207 TGCATGTGTG
45906217 TAACTCTTCATCTTCAAGTCTCTTCACATTTC
1 TAACTCTTCATCTTCAAGTCTCTTCACATTTC
* *
45906249 TAACACTTCATCTTCAAGTTTCTTCACATTTC
1 TAACTCTTCATCTTCAAGTCTCTTCACATTTC
45906281 TAACTCTTC
1 TAACTCTTC
45906290 TTAATTTGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.23, C:0.30, G:0.03, T:0.44
Consensus pattern (32 bp):
TAACTCTTCATCTTCAAGTCTCTTCACATTTC
Found at i:45908316 original size:28 final size:28
Alignment explanation
Indices: 45908172--45908316 Score: 168
Period size: 28 Copynumber: 5.2 Consensus size: 28
45908162 CTATTCAGTA
* *
45908172 ACAGT-ACAATGCGGGTCTTAGCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
**
45908199 ACAACAACAATGTGGGCCTTAGCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
* * *
45908227 ACAGCAACAATGTGGGGCTTAGCCCAAA
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
* *
45908255 ATAGTAACAATGTGGGTCTTAGCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
* *
45908283 ATAGTAACAATGTTGGCCTTAGCCCTAA-
1 ACAGTAACAATGTGGGCCTTAGCCC-AAT
45908311 ACAGTA
1 ACAGTA
45908317 TCAGTACCGT
Statistics
Matches: 102, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
27 3 0.03
28 97 0.95
29 2 0.02
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (28 bp):
ACAGTAACAATGTGGGCCTTAGCCCAAT
Found at i:45908448 original size:23 final size:24
Alignment explanation
Indices: 45908425--45908472 Score: 60
Period size: 26 Copynumber: 1.9 Consensus size: 24
45908415 ACACATCAAT
*
45908425 ATCACAGCAACGCTGCCAGTAATAGA
1 ATCACAGCAAAGCTGCCAGTAAT--A
*
45908451 ATCGCAGCAAAGCTGCCAGTAA
1 ATCACAGCAAAGCTGCCAGTAA
45908473 CAATATACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.38, C:0.27, G:0.21, T:0.15
Consensus pattern (24 bp):
ATCACAGCAAAGCTGCCAGTAATA
Found at i:45908656 original size:27 final size:26
Alignment explanation
Indices: 45908626--45909357 Score: 319
Period size: 27 Copynumber: 27.2 Consensus size: 26
45908616 GGTATAATAG
*
45908626 TCATCTTACCTTATGGGGGTATTTCGA
1 TCATTTTACCTT-TGGGGGTATTTCGA
* *
45908653 TCATTTTATCCTATGGGGGTAATTCGA
1 TCATTTTA-CCTTTGGGGGTATTTCGA
* ** * *
45908680 TTATTTTACCCAATGGGGGTATTTTGG
1 TCATTTTA-CCTTTGGGGGTATTTCGA
*
45908707 TCATTTTACCCTTTGGGGGTATTTCGG
1 TCATTTTA-CCTTTGGGGGTATTTCGA
* * * *
45908734 TCATTTCACCCTTT-AGGATATTTCAA
1 TCATTTTA-CCTTTGGGGGTATTTCGA
** * *
45908760 TCATTTCGCCTTTCGGGGTATTTCGG
1 TCATTTTACCTTTGGGGGTATTTCGA
* * *
45908786 TCATTTTACCCTATGGGGGTAATTCGG
1 TCATTTTA-CCTTTGGGGGTATTTCGA
*
45908813 TCATTTTACGTTTCGGGAGGTATTTC-A
1 TCATTTTACCTTT-GGG-GGTATTTCGA
* *
45908840 GTTATTTTACCCTTTGAGGGTATTTCGA
1 -TCATTTTA-CCTTTGGGGGTATTTCGA
** *
45908868 TCATTTTACCTTTTGAAGGCATTTC-A
1 TCATTTTACC-TTTGGGGGTATTTCGA
* * * *
45908894 GTCATTTTACCCTTAGAGGTATTTCAA
1 -TCATTTTACCTTTGGGGGTATTTCGA
* * * ** * * *
45908921 TCATTTTACCCATCGAGAATTTTTTGG
1 TCATTTTA-CCTTTGGGGGTATTTCGA
* * ** *
45908948 TCATTTTACCCTTCGAGGCCATTTCGG
1 TCATTTTA-CCTTTGGGGGTATTTCGA
* * * *
45908975 TCATTTTACCCTTCGAGGGTATTTTGG
1 TCATTTTA-CCTTTGGGGGTATTTCGA
* * *
45909002 TCATTTTACCCTTCGAGGATATTTCGA
1 TCATTTTA-CCTTTGGGGGTATTTCGA
* * * *
45909029 TCATTTTACCATTCGAGGGCATTT-TA
1 TCATTTTACC-TTTGGGGGTATTTCGA
** * *
45909055 GTCATTTTACCTTTTTAGAGTATTTTGA
1 -TCATTTTACC-TTTGGGGGTATTTCGA
* * **** * *
45909083 TCATTTTACCCATCGATAATATTTTGG
1 TCATTTTA-CCTTTGGGGGTATTTCGA
* * *
45909110 TCATTTTACCCTTCGAGGGTATTTCGG
1 TCATTTTA-CCTTTGGGGGTATTTCGA
*
45909137 TCATTTTACCCTTTGAGGGTATTTCGA
1 TCATTTTA-CCTTTGGGGGTATTTCGA
*** *
45909164 TCATTTTACCCTTCAAGGATATTTC-A
1 TCATTTTA-CCTTTGGGGGTATTTCGA
*
45909190 GTCATTTTACCTTTGAGGGTATTTC-A
1 -TCATTTTACCTTTGGGGGTATTTCGA
* *
45909216 GTCATTTTACCCTCTGAGGGTATTTC-A
1 -TCATTTTA-CCTTTGGGGGTATTTCGA
* *
45909243 GTCATTTTACCCTCTGAGGGTATTTC-A
1 -TCATTTTA-CCTTTGGGGGTATTTCGA
** * *
45909270 GTCATTTTACCCTCCGAGGGTATTTCGG
1 -TCATTTTA-CCTTTGGGGGTATTTCGA
* * *
45909298 TCATTTTACCCTATAGGAGTATTTCGA
1 TCATTTTA-CCTTTGGGGGTATTTCGA
* * *
45909325 TCATTTTACCTGTCGGAGGTATTTCGG
1 TCATTTTACCT-TTGGGGGTATTTCGA
45909352 TCATTT
1 TCATTT
45909358 GCCCACAAAT
Statistics
Matches: 577, Mismatches: 108, Indels: 40
0.80 0.15 0.06
Matches are distributed among these distances:
25 5 0.01
26 83 0.14
27 462 0.80
28 23 0.04
29 4 0.01
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (26 bp):
TCATTTTACCTTTGGGGGTATTTCGA
Found at i:45909322 original size:161 final size:161
Alignment explanation
Indices: 45908642--45909357 Score: 693
Period size: 161 Copynumber: 4.4 Consensus size: 161
45908632 TACCTTATGG
* * ** * * * * * *
45908642 GGGTATTTCGATCATTTTATCCTATGGGGGTAATTCGATTATTTTACCCAAT-GGGGGTATTTTG
1 GGGTATTTCGGTCATTTTACCCTATCAGGGTATTTCGATCATTTTACCC-TTCGAGGATATTTCG
* * * * * * * ** *
45908706 GTCATTTTACCCTTTGGGGGTATTTCGGTCATTTCACCCTTTAGGATATTTCAATCATTTCGCCT
65 ATCATTTTACCATTTGAGGGCATTTCAGTCATTTTACCCTTTAGGGTATTTCAATCATTTTACCC
* ** *
45908771 TTCG-GGGTATTTCGGTCATTTTACCCTAT-GG
130 ATCGAGAATATTTCGGTCATTTTACCCT-TCGA
* * * * * * *
45908802 GGGTAATTCGGTCATTTTA-CGTTTCGGGAGGTATTTC-AGTTATTTTACCCTTTGAGGGTATTT
1 GGGTATTTCGGTCATTTTACCCTATC-AG-GGTATTTCGA-TCATTTTACCCTTCGAGGATATTT
* *
45908865 CGATCATTTTACCTTTTGAAGGCATTTCAGTCATTTTACCC-TTAGAGGTATTTCAATCATTTTA
63 CGATCATTTTACCATTTGAGGGCATTTCAGTCATTTTACCCTTTAG-GGTATTTCAATCATTTTA
* *
45908929 CCCATCGAGAATTTTTTGGTCATTTTACCCTTCGA
127 CCCATCGAGAATATTTCGGTCATTTTACCCTTCGA
** * *
45908964 GGCCATTTCGGTCATTTTACCCT-TCGAGGGTATTTTGGTCATTTTACCCTTCGAGGATATTTCG
1 GGGTATTTCGGTCATTTTACCCTATC-AGGGTATTTCGATCATTTTACCCTTCGAGGATATTTCG
* * * * **
45909028 ATCATTTTACCATTCGAGGGCATTTTAGTCATTTTACCTTTTTAGAGTATTTTGATCATTTTACC
65 ATCATTTTACCATTTGAGGGCATTTCAGTCATTTTACC-CTTTAGGGTATTTCAATCATTTTACC
* *
45909093 CATCGATAATATTTTGGTCATTTTACCCTTCGA
129 CATCGAGAATATTTCGGTCATTTTACCCTTCGA
* * *
45909126 GGGTATTTCGGTCATTTTACCCTTTGAGGGTATTTCGATCATTTTACCCTTCAAGGATATTTC-A
1 GGGTATTTCGGTCATTTTACCCTATCAGGGTATTTCGATCATTTTACCCTTCGAGGATATTTCGA
* * *
45909190 GTCATTTTACC-TTTGAGGGTATTTCAGTCATTTTACCCTCTGAGGGTATTTCAGTCATTTTACC
66 -TCATTTTACCATTTGAGGGCATTTCAGTCATTTTACCCT-TTAGGGTATTTCAATCATTTTACC
** * *
45909254 C-TCTGAGGGTATTTCAGTCATTTTACCCTCCGA
129 CATC-GAGAATATTTCGGTCATTTTACCCTTCGA
45909287 GGGTATTTCGGTCATTTTACCCTAT-AGGAGTATTTCGATCATTTTA-CCTGTCGGAGG-TATTT
1 GGGTATTTCGGTCATTTTACCCTATCAGG-GTATTTCGATCATTTTACCCT-TC-GAGGATATTT
*
45909349 CGGTCATTT
63 CGATCATTT
45909358 GCCCACAAAT
Statistics
Matches: 467, Mismatches: 70, Indels: 37
0.81 0.12 0.06
Matches are distributed among these distances:
159 3 0.01
160 34 0.07
161 267 0.57
162 156 0.33
163 7 0.01
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (161 bp):
GGGTATTTCGGTCATTTTACCCTATCAGGGTATTTCGATCATTTTACCCTTCGAGGATATTTCGA
TCATTTTACCATTTGAGGGCATTTCAGTCATTTTACCCTTTAGGGTATTTCAATCATTTTACCCA
TCGAGAATATTTCGGTCATTTTACCCTTCGA
Found at i:45913767 original size:16 final size:16
Alignment explanation
Indices: 45913748--45913802 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
45913738 ATCTTCAAGT
45913748 CTCTTCACATTTCTAA
1 CTCTTCACATTTCTAA
*
45913764 CTCTT--CATCTTCAAA
1 CTCTTCACAT-TTCTAA
* *
45913779 TTTCTTTACATTTCTAA
1 -CTCTTCACATTTCTAA
45913796 CTCTTCA
1 CTCTTCA
45913803 TAATTTATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
14 3 0.10
15 5 0.17
16 14 0.47
17 5 0.17
18 3 0.10
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.47
Consensus pattern (16 bp):
CTCTTCACATTTCTAA
Found at i:45913770 original size:32 final size:32
Alignment explanation
Indices: 45913729--45913803 Score: 123
Period size: 32 Copynumber: 2.3 Consensus size: 32
45913719 TGCATGTGGG
*
45913729 TAACTCTTCATCTTCAAGTCTCTTCACATTTC
1 TAACTCTTCATCTTCAAATCTCTTCACATTTC
* *
45913761 TAACTCTTCATCTTCAAATTTCTTTACATTTC
1 TAACTCTTCATCTTCAAATCTCTTCACATTTC
45913793 TAACTCTTCAT
1 TAACTCTTCAT
45913804 AATTTATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.24, C:0.28, G:0.01, T:0.47
Consensus pattern (32 bp):
TAACTCTTCATCTTCAAATCTCTTCACATTTC
Found at i:45916294 original size:7 final size:7
Alignment explanation
Indices: 45916282--45916312 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
45916272 TAGTATATAC
45916282 GTGTGTG
1 GTGTGTG
45916289 GTGTGTG
1 GTGTGTG
45916296 GTGTGTG
1 GTGTGTG
45916303 GTGTG-G
1 GTGTGTG
45916309 GTGT
1 GTGT
45916313 ATTTCTATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.21
7 19 0.79
ACGTcount: A:0.00, C:0.00, G:0.58, T:0.42
Consensus pattern (7 bp):
GTGTGTG
Found at i:45941095 original size:30 final size:30
Alignment explanation
Indices: 45941001--45941102 Score: 87
Period size: 30 Copynumber: 3.4 Consensus size: 30
45940991 GATTGTCACC
** * * * *
45941001 ATCCCTTTTCATAGCTCGATTGCTGAAGCT
1 ATCCCTTTTCATAATTTGATAGTTGAAACT
* * * ** *
45941031 ATCCCTTTTCATATTTTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATAGTTGAAACT
45941061 ATCCCTTTTCATAATTTGATAGTTGAAACT
1 ATCCCTTTTCATAATTTGATAGTTGAAACT
*
45941091 ATCCCTTGTCAT
1 ATCCCTTTTCAT
45941103 TGATCGATGA
Statistics
Matches: 55, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 55 1.00
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.41
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATAGTTGAAACT
Found at i:45945017 original size:11 final size:11
Alignment explanation
Indices: 45945003--45945027 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
45944993 GTCTTTTTCC
45945003 TTTCTTATTCT
1 TTTCTTATTCT
45945014 TTTCTTATTCT
1 TTTCTTATTCT
45945025 TTT
1 TTT
45945028 TCCTTTTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTCTTATTCT
Found at i:45949742 original size:17 final size:17
Alignment explanation
Indices: 45949720--45949761 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
45949710 TAATATAACA
*
45949720 TTAATTTGATATATTTT
1 TTAATTTAATATATTTT
45949737 TTAATTTAATATATTTT
1 TTAATTTAATATATTTT
45949754 TTAATTTA
1 TTAATTTA
45949762 TGCCTATACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TTAATTTAATATATTTT
Found at i:45949985 original size:58 final size:58
Alignment explanation
Indices: 45949923--45950063 Score: 171
Period size: 59 Copynumber: 2.4 Consensus size: 58
45949913 ATATATTTTT
* * *
45949923 TAATTTGATACTTAAACTTTTCTTTGTCCAATTTGGTACCTAAACTT-ACATTTTTTCC
1 TAATTTGATACCTAATCTTTTCTTTGTCCAATTTGATACCTAAACTTGAC-TTTTTTCC
* * *
45949981 TAATTTAATACCTAATCTTTT-TGGTAGTCCAATTTGATACCTGAACTTGACTTTTTTCC
1 TAATTTGATACCTAATCTTTTCT--TTGTCCAATTTGATACCTAAACTTGACTTTTTTCC
*
45950040 TAATTTG-TACCTAATCTCTTCTTT
1 TAATTTGATACCTAATCTTTTCTTT
45950064 TTTTCGATTT
Statistics
Matches: 70, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
57 2 0.03
58 30 0.43
59 36 0.51
60 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.08, T:0.48
Consensus pattern (58 bp):
TAATTTGATACCTAATCTTTTCTTTGTCCAATTTGATACCTAAACTTGACTTTTTTCC
Found at i:45950170 original size:7 final size:7
Alignment explanation
Indices: 45950160--45950203 Score: 72
Period size: 7 Copynumber: 6.3 Consensus size: 7
45950150 ATATATGACC
45950160 GACATGT
1 GACATGT
45950167 GACATGT
1 GACATGT
45950174 GACATGT
1 GACATGT
45950181 GACATGT
1 GACATGT
45950188 GA-ATTGT
1 GACA-TGT
45950195 GACATGT
1 GACATGT
45950202 GA
1 GA
45950204 TATGATTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
6 1 0.03
7 33 0.94
8 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30
Consensus pattern (7 bp):
GACATGT
Found at i:45950611 original size:59 final size:59
Alignment explanation
Indices: 45950482--45950633 Score: 166
Period size: 59 Copynumber: 2.6 Consensus size: 59
45950472 ATTGAATCTA
** * * * *
45950482 AAAAAAGAGCTTAGATATCAAATTAAGAAAAAGTATCAAGTTCAAGTACCAAATTGGGCC
1 AAAAAAGAATTTAGATACCAAATTAA-AAAAAATGTCAAGTTCAAATACCAAATTGGGCC
* * *
45950542 CAAAAA-AATTTAGATACCAAATTAGAAAAAAATGTCAAGTTCAAATATCAAATTGGG-T
1 AAAAAAGAATTTAGATACCAAATTA-AAAAAAATGTCAAGTTCAAATACCAAATTGGGCC
* *
45950600 AAAAAAGAATTTAGGTACTAAA-TAAAAAAAATGT
1 AAAAAAGAATTTAGATACCAAATTAAAAAAAATGT
45950634 AAAATTCACA
Statistics
Matches: 78, Mismatches: 12, Indels: 7
0.80 0.12 0.07
Matches are distributed among these distances:
57 10 0.13
58 7 0.09
59 55 0.71
60 6 0.08
ACGTcount: A:0.53, C:0.10, G:0.14, T:0.24
Consensus pattern (59 bp):
AAAAAAGAATTTAGATACCAAATTAAAAAAAATGTCAAGTTCAAATACCAAATTGGGCC
Found at i:45952679 original size:16 final size:17
Alignment explanation
Indices: 45952655--45952697 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
45952645 CCCACATTTA
45952655 TTAAATAAAA-ATTATC
1 TTAAATAAAATATTATC
*
45952671 TTAATTAAAATATTAT-
1 TTAAATAAAATATTATC
*
45952687 TTCAATAAAAT
1 TTAAATAAAAT
45952698 GTTTAAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (17 bp):
TTAAATAAAATATTATC
Found at i:45956395 original size:23 final size:23
Alignment explanation
Indices: 45956368--45956542 Score: 143
Period size: 23 Copynumber: 7.6 Consensus size: 23
45956358 AAACAAAACT
* *
45956368 TACCACAAAGACATTGCAGAATA
1 TACCACAAAGGCATTACAGAATA
* * **
45956391 CACCACAAAGGCACTGTAGAATA
1 TACCACAAAGGCATTACAGAATA
* ** **
45956414 TGCCACAAAGATATTGTAGAATA
1 TACCACAAAGGCATTACAGAATA
** ** *
45956437 CGCCACAAATACATTACAAAATA
1 TACCACAAAGGCATTACAGAATA
* *
45956460 TGCCATAAAGGCATTACAGAATA
1 TACCACAAAGGCATTACAGAATA
*
45956483 TGCCACAAAGGCATTACAGAATA
1 TACCACAAAGGCATTACAGAATA
* * * *
45956506 CACCATAATGGCATTACAAAATA
1 TACCACAAAGGCATTACAGAATA
45956529 TACCACAAAGGCAT
1 TACCACAAAGGCAT
45956543 CTCAAGTAAC
Statistics
Matches: 123, Mismatches: 29, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 123 1.00
ACGTcount: A:0.46, C:0.22, G:0.14, T:0.19
Consensus pattern (23 bp):
TACCACAAAGGCATTACAGAATA
Found at i:45956504 original size:69 final size:69
Alignment explanation
Indices: 45956369--45956542 Score: 181
Period size: 69 Copynumber: 2.5 Consensus size: 69
45956359 AACAAAACTT
* * * * ** * **
45956369 ACCACAAA-GACATTGCAGAATACACCACAAAGGCACTGTAGAATATGCCACAAAGATATTGTAG
1 ACCA-AAATGACATTACAAAATATACCACAAAGGCATTACAGAATATGCCACAAAGACATTACAG
45956433 AATAC
65 AATAC
* * * *
45956438 GCCACAAAT-ACATTACAAAATATGCCATAAAGGCATTACAGAATATGCCACAAAGGCATTACAG
1 ACCA-AAATGACATTACAAAATATACCACAAAGGCATTACAGAATATGCCACAAAGACATTACAG
45956502 AATAC
65 AATAC
* *
45956507 ACCATAATGGCATTACAAAATATACCACAAAGGCAT
1 ACCAAAATGACATTACAAAATATACCACAAAGGCAT
45956543 CTCAAGTAAC
Statistics
Matches: 85, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
68 3 0.04
69 82 0.96
ACGTcount: A:0.46, C:0.22, G:0.14, T:0.18
Consensus pattern (69 bp):
ACCAAAATGACATTACAAAATATACCACAAAGGCATTACAGAATATGCCACAAAGACATTACAGA
ATAC
Found at i:45958939 original size:23 final size:21
Alignment explanation
Indices: 45958898--45958950 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
45958888 AAGAAAAAGA
45958898 AAAAGAAAAAAAAGGAGAGAT
1 AAAAGAAAAAAAAGGAGAGAT
* *
45958919 AAAAGATAAGAAAAGGAAGAGAA
1 AAAAGA-AAAAAAAGG-AGAGAT
45958942 AGAAAGAAA
1 A-AAAGAAA
45958951 TATATCATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 6 0.22
22 8 0.30
23 8 0.30
24 5 0.19
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.04
Consensus pattern (21 bp):
AAAAGAAAAAAAAGGAGAGAT
Found at i:45973708 original size:21 final size:21
Alignment explanation
Indices: 45973683--45973727 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
45973673 TTTATTAAAT
*
45973683 TTTATTCATCGAAGCTGCCAA
1 TTTATTCACCGAAGCTGCCAA
45973704 TTTATTCACCGAAGCTGCCAA
1 TTTATTCACCGAAGCTGCCAA
45973725 TTT
1 TTT
45973728 TCAAGCTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (21 bp):
TTTATTCACCGAAGCTGCCAA
Found at i:45973917 original size:17 final size:17
Alignment explanation
Indices: 45973895--45973929 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
45973885 AGAATTACGA
45973895 GCAGAATTTCTGAACGG
1 GCAGAATTTCTGAACGG
45973912 GCAGAATTTCTGAACGG
1 GCAGAATTTCTGAACGG
45973929 G
1 G
45973930 ATTATGACGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (17 bp):
GCAGAATTTCTGAACGG
Found at i:45974498 original size:12 final size:12
Alignment explanation
Indices: 45974483--45974517 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
45974473 TTTTCCATTA
45974483 TCTTCTTTATTT
1 TCTTCTTTATTT
45974495 TCTTCTTTATTT
1 TCTTCTTTATTT
45974507 TCTTCTTTATT
1 TCTTCTTTATT
45974518 GTTCCAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.09, C:0.17, G:0.00, T:0.74
Consensus pattern (12 bp):
TCTTCTTTATTT
Found at i:45976304 original size:19 final size:20
Alignment explanation
Indices: 45976276--45976315 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
45976266 TTCTAAATTA
*
45976276 TTATCCACATCA-TTTAAAT
1 TTATCAACATCATTTTAAAT
*
45976295 TTATCAACATTATTTTAAAT
1 TTATCAACATCATTTTAAAT
45976315 T
1 T
45976316 CTTTTTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.47
Consensus pattern (20 bp):
TTATCAACATCATTTTAAAT
Found at i:45977072 original size:33 final size:33
Alignment explanation
Indices: 45977030--45977097 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
45977020 AAAAGGGACG
45977030 AATCTAACTTCGAAGATGGAATTGTTGCACTCT
1 AATCTAACTTCGAAGATGGAATTGTTGCACTCT
*
45977063 AATCTAACTTCGAAGATGGAATTGTTTCACTCT
1 AATCTAACTTCGAAGATGGAATTGTTGCACTCT
45977096 AA
1 AA
45977098 CTCACTGAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (33 bp):
AATCTAACTTCGAAGATGGAATTGTTGCACTCT
Found at i:45978569 original size:25 final size:25
Alignment explanation
Indices: 45978541--45978598 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
45978531 CAAGCCAATA
45978541 GCTCTCCCTGTACAACCAACCTAAG
1 GCTCTCCCTGTACAACCAACCTAAG
* *
45978566 GCTCTTCCTGTACAACCAACCTACG
1 GCTCTCCCTGTACAACCAACCTAAG
45978591 GCCTCTCC
1 G-CTCTCC
45978599 TCGCGAACCA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 24 0.83
26 5 0.17
ACGTcount: A:0.22, C:0.43, G:0.12, T:0.22
Consensus pattern (25 bp):
GCTCTCCCTGTACAACCAACCTAAG
Found at i:45983001 original size:18 final size:18
Alignment explanation
Indices: 45982962--45983001 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
45982952 TATGCTATGT
*
45982962 TTTTGAAATTTTTAATAT
1 TTTTGAAATTTTTAATAA
* *
45982980 TTTTGCAATTTTTATTAA
1 TTTTGAAATTTTTAATAA
45982998 TTTT
1 TTTT
45983002 TTATATTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.65
Consensus pattern (18 bp):
TTTTGAAATTTTTAATAA
Found at i:45996103 original size:19 final size:19
Alignment explanation
Indices: 45996079--45996117 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
45996069 CTTGCAGATA
45996079 TCTTCCATCTGAAAAGCTT
1 TCTTCCATCTGAAAAGCTT
45996098 TCTTCCATCTGAAAAGCTT
1 TCTTCCATCTGAAAAGCTT
45996117 T
1 T
45996118 ATACTTATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTTCCATCTGAAAAGCTT
Found at i:45996668 original size:14 final size:14
Alignment explanation
Indices: 45996645--45996677 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
45996635 ATCAAGCTAT
45996645 TGAGAAAAGCTAAA
1 TGAGAAAAGCTAAA
*
45996659 TGAGAGAAGCTAAA
1 TGAGAAAAGCTAAA
45996673 TGAGA
1 TGAGA
45996678 TCCCCATCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.06, G:0.27, T:0.15
Consensus pattern (14 bp):
TGAGAAAAGCTAAA
Found at i:46001227 original size:25 final size:24
Alignment explanation
Indices: 46001199--46001354 Score: 107
Period size: 25 Copynumber: 6.2 Consensus size: 24
46001189 AAGCTCTTTC
*
46001199 GAGCCATGTAACGGGAAGCTCATGT
1 GAGCCAT-TAACGGGAAGCTCATGA
** * *
46001224 GAGCTGTATAACTGGAAGCTCAAT-C
1 GAGCCAT-TAACGGGAAGCTC-ATGA
** * *
46001249 GAGCTGTTTATCGGGAAGCTCATAA
1 GAGC-CATTAACGGGAAGCTCATGA
*
46001274 GAGCCATTAATCGGGAAGCTCATGC
1 GAGCCATTAA-CGGGAAGCTCATGA
* ** *
46001299 GAGCCAATTATCAAGAAGCTCAAGA
1 GAGCC-ATTAACGGGAAGCTCATGA
*
46001324 GAGCCATTAATCGGGAAGCTCGTGA
1 GAGCCATTAA-CGGGAAGCTCATGA
46001349 GAGCCA
1 GAGCCA
46001355 AATATTAGGA
Statistics
Matches: 100, Mismatches: 25, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
24 9 0.09
25 84 0.84
26 7 0.07
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.21
Consensus pattern (24 bp):
GAGCCATTAACGGGAAGCTCATGA
Found at i:46001377 original size:50 final size:50
Alignment explanation
Indices: 46001263--46001377 Score: 160
Period size: 50 Copynumber: 2.3 Consensus size: 50
46001253 TGTTTATCGG
* *
46001263 GAAGCTCATAAGAGCCATTAATCGGGAAGCTCATGCGAGCCAATTATCAA
1 GAAGCTCATAAGAGCCATTAATCGGGAAGCTCATGAGAGCCAAATATCAA
* * *
46001313 GAAGCTCA-AGAGAGCCATTAATCGGGAAGCTCGTGAGAGCCAAATATTAG
1 GAAGCTCATA-AGAGCCATTAATCGGGAAGCTCATGAGAGCCAAATATCAA
*
46001363 GATGCTCATAAGAGC
1 GAAGCTCATAAGAGC
46001378 TGTGGTGTGT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
49 1 0.02
50 55 0.96
51 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.19
Consensus pattern (50 bp):
GAAGCTCATAAGAGCCATTAATCGGGAAGCTCATGAGAGCCAAATATCAA
Found at i:46009218 original size:36 final size:36
Alignment explanation
Indices: 46009147--46009268 Score: 120
Period size: 36 Copynumber: 3.4 Consensus size: 36
46009137 GCACATCTTC
* * *
46009147 AATCCAACCATAACACGCCAAATGCTCATACGAGCT
1 AATCCAACCAAAACACACCAAATGCTCATAAGAGCT
** * *
46009183 AATCCCTCCAAAACACACCAAATGCTTACAAGAGCT
1 AATCCAACCAAAACACACCAAATGCTCATAAGAGCT
* * *
46009219 AGTCCAACCGAAACAAACC-AATGCTCATAAGAGCT
1 AATCCAACCAAAACACACCAAATGCTCATAAGAGCT
* * *
46009254 AGTCTAACCGAAACA
1 AATCCAACCAAAACA
46009269 TGCCAAACAA
Statistics
Matches: 71, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
35 28 0.39
36 43 0.61
ACGTcount: A:0.42, C:0.31, G:0.11, T:0.16
Consensus pattern (36 bp):
AATCCAACCAAAACACACCAAATGCTCATAAGAGCT
Found at i:46009251 original size:35 final size:36
Alignment explanation
Indices: 46009164--46009268 Score: 122
Period size: 36 Copynumber: 2.9 Consensus size: 36
46009154 CCATAACACG
* * ** * *
46009164 CCAAATGCTCATACGAGCTAATCCCTCCAAAACACA
1 CCAAATGCTCATAAGAGCTAGTCCAACCGAAACAAA
* *
46009200 CCAAATGCTTACAAGAGCTAGTCCAACCGAAACAAA
1 CCAAATGCTCATAAGAGCTAGTCCAACCGAAACAAA
*
46009236 CC-AATGCTCATAAGAGCTAGTCTAACCGAAACA
1 CCAAATGCTCATAAGAGCTAGTCCAACCGAAACA
46009269 TGCCAAACAA
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
35 28 0.48
36 30 0.52
ACGTcount: A:0.41, C:0.30, G:0.12, T:0.16
Consensus pattern (36 bp):
CCAAATGCTCATAAGAGCTAGTCCAACCGAAACAAA
Done.