Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 153 of 187
Found at i:46022763 original size:14 final size:15
Alignment explanation
Indices: 46022744--46022773 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
46022734 TTACAGTTCT
46022744 ATAATAATTT-TTTA
1 ATAATAATTTATTTA
46022758 ATAATAATTTATTTA
1 ATAATAATTTATTTA
46022773 A
1 A
46022774 ATTTATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
ATAATAATTTATTTA
Found at i:46023507 original size:155 final size:153
Alignment explanation
Indices: 46023228--46023638 Score: 646
Period size: 155 Copynumber: 2.7 Consensus size: 153
46023218 AAATTTTGTA
* * * *
46023228 TATAAAATAACTGTTGATTCGGTTTACACGAAAACCGAGTCATTCTAT-G-GTGTATACGTCGCA
1 TATAAAATAACTGTTGATTCAGTTT-CACGAAAACTGAGTCATACTATGGTGTGTATACGTTGCA
* *
46023291 GAAGTGAGAAGAGGAAGGAGAAGTGCATTAACCGCTCTACCCATTAAGCCATAGAGTCATGTTCT
65 GAAATGGGAAGAGGAAGGAGAAGTGCATTAACCGCTCTACCCATTAAGCCATAGAGTCATGTTCT
*
46023356 GCGAGATTCTTTGAAATGTTTTAC
130 GCAAGATTCTTTGAAATGTTTTAC
* * *
46023380 TATAAAATAACTGTTGATTTAGTTTCTACGAAAACTGAGTCATACTATGGTGTGTATACATTACA
1 TATAAAATAACTGTTGATTCAGTTTC-ACGAAAACTGAGTCATACTATGGTGTGTATACGTTGCA
*
46023445 GAAATGGGAAGAGGGAAGGAGAAGTGCATTAACCGCTCTACCCATTAGGCCATAGAGTCATGTTC
65 GAAATGGGAAGA-GGAAGGAGAAGTGCATTAACCGCTCTACCCATTAAGCCATAGAGTCATGTTC
46023510 TGCAAGATTCTTTGAAATGTTTTAC
129 TGCAAGATTCTTTGAAATGTTTTAC
*
46023535 TATAAAATAACTGTTGATTCAGTTTCCACGAAAACTGAATCATACTATGGTGTGTATACGTTGCA
1 TATAAAATAACTGTTGATTCAGTTT-CACGAAAACTGAGTCATACTATGGTGTGTATACGTTGCA
* *
46023600 GAAATGGGAAGAGGAAAGAGAAATGCATTAACCGCTCTA
65 GAAATGGGAAGAGGAAGGAGAAGTGCATTAACCGCTCTA
46023639 TCTCTCACTC
Statistics
Matches: 237, Mismatches: 17, Indels: 8
0.90 0.06 0.03
Matches are distributed among these distances:
151 1 0.00
152 42 0.18
153 1 0.00
154 46 0.19
155 146 0.62
156 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.29
Consensus pattern (153 bp):
TATAAAATAACTGTTGATTCAGTTTCACGAAAACTGAGTCATACTATGGTGTGTATACGTTGCAG
AAATGGGAAGAGGAAGGAGAAGTGCATTAACCGCTCTACCCATTAAGCCATAGAGTCATGTTCTG
CAAGATTCTTTGAAATGTTTTAC
Found at i:46025330 original size:16 final size:16
Alignment explanation
Indices: 46025309--46025348 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
46025299 CGTTTAGTTC
46025309 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
46025325 GCTGTAATTGAATAGA
1 GCTGTAATGGAATAGA
*
46025341 GCTATAAT
1 GCTGTAAT
46025349 AAGTAATTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:46034875 original size:86 final size:86
Alignment explanation
Indices: 46034726--46034899 Score: 312
Period size: 86 Copynumber: 2.0 Consensus size: 86
46034716 AGAATAGGGT
*
46034726 ACGAGGCATTACCAGAACACATACACTTGTAAACGTATTTAACCGAGTTATAAAACTTTATCTAA
1 ACGAGGCATTACCAGAACACATACACTTGTAAACGTATTTAACCGAGTTATAAAACTTCATCTAA
46034791 ATTAAAACTTTCAAAGTATTA
66 ATTAAAACTTTCAAAGTATTA
* *
46034812 ACGAGGCATTACTAGAACACATACACTTGTAAACGTATTTAACTGAGTTATAAAACTTCATCTAA
1 ACGAGGCATTACCAGAACACATACACTTGTAAACGTATTTAACCGAGTTATAAAACTTCATCTAA
*
46034877 ATTAAAACTTTCAAATTATTA
66 ATTAAAACTTTCAAAGTATTA
46034898 AC
1 AC
46034900 ATTCTTTTAT
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 84 1.00
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (86 bp):
ACGAGGCATTACCAGAACACATACACTTGTAAACGTATTTAACCGAGTTATAAAACTTCATCTAA
ATTAAAACTTTCAAAGTATTA
Found at i:46035323 original size:51 final size:51
Alignment explanation
Indices: 46035264--46035482 Score: 359
Period size: 51 Copynumber: 4.3 Consensus size: 51
46035254 TACGTATGAT
* *
46035264 TTATCACTTGTCACTTTTCATTGATCAGATAAGTGTAGCTGAAGCTATCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCAC
* * *
46035315 TTATCACTTGCCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCAC
*
46035366 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTTAAGCTATCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCAC
*
46035417 TTATCACTTGCCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTA-CTAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATC-AC
46035468 TTATCACTTGTCACT
1 TTATCACTTGTCACT
46035483 AATCAGAAGT
Statistics
Matches: 156, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
50 1 0.01
51 155 0.99
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCAC
Found at i:46039956 original size:11 final size:11
Alignment explanation
Indices: 46039940--46039964 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
46039930 TATAGTATAA
46039940 ATATTTAAAAT
1 ATATTTAAAAT
46039951 ATATTTAAAAT
1 ATATTTAAAAT
46039962 ATA
1 ATA
46039965 AAACCTCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
ATATTTAAAAT
Found at i:46040579 original size:19 final size:19
Alignment explanation
Indices: 46040555--46040603 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
46040545 TTTTTATAAA
46040555 TATTTTGACTCTTAAAAAT
1 TATTTTGACTCTTAAAAAT
* * *
46040574 TATTTTGAATTTTTGAAAAT
1 TATTTTG-ACTCTTAAAAAT
46040594 TATTTTGACT
1 TATTTTGACT
46040604 ATTTTTTGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.53
Consensus pattern (19 bp):
TATTTTGACTCTTAAAAAT
Found at i:46043218 original size:15 final size:16
Alignment explanation
Indices: 46043198--46043230 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
46043188 ATAGGGATAT
46043198 AATAAA-ATATTAAAA
1 AATAAATATATTAAAA
*
46043213 AATAAATATTTTAAAA
1 AATAAATATATTAAAA
46043229 AA
1 AA
46043231 AGAGACATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
AATAAATATATTAAAA
Found at i:46043397 original size:191 final size:194
Alignment explanation
Indices: 46042893--46043422 Score: 561
Period size: 191 Copynumber: 2.7 Consensus size: 194
46042883 AAAGTGCACA
* * * * ** * * * *
46042893 CAAGTATACTAAATATTAACCTTTAAGAGAAATTATTTGGTATGCTGTTAATGGAATTTTTAGAC
1 CAAGTGTACAAAATACTAACCCTTAAGAGAAATTATTTGGTACACTGCTAGTGGAGTTTTTAAAC
* * * * *
46042958 TCTACAAGTAAAGTCCGAGGTTGACAAGTGTCTTATAGAGATATAGTAAAATATT-AAAAATAAA
66 TC-ACAAGTAAGGTCAGGGGTTGACAAGTGTCTTATAAAGGTATAGTAAAATATTAAAAAATAAA
*
46043022 TA-TTTAAAAGAAGGAGACACATGCCAATTTTTTAAGGTTGTTTGTGAAATAAAAAAAGTAGTAC
130 TATTTTAAAA-AA--AGACACATGCCAATTTTTCAAGGTTGTTTGTGAAATAAAAAAAG-AGTAC
46043086 ATTG
191 ATTG
** * * * * ** *
46043090 CAAGTGTATTAAATACTAACCCTTAA-AGAAATTATATGGTACATTACCAGTAAAGGTTTTAAAT
1 CAAGTGTACAAAATACTAACCCTTAAGAGAAATTATTTGGTACACTGCTAGTGGAGTTTTTAAA-
* * * * * * *
46043154 TTCACAAGCAAGATAAGGGATTGACAAGTGTCTTAT-AGGGATATAATAAAATATTAAAAAATAA
65 CTCACAAGTAAGGTCAGGGGTTGACAAGTGTCTTATAAAGG-TATAGTAAAATATTAAAAAATAA
* * *
46043218 ATATTTTAAAAAAAGAGACATGCTAATTTTTCAAGGTTGTTTGTGGAAT-AAAAAA-AGTACATT
129 ATATTTTAAAAAAAGACACATGCCAATTTTTCAAGGTTGTTTGTGAAATAAAAAAAGAGTACATT
46043281 G
194 G
* * *
46043282 CCA-TGTACAAAATACTAACCCTTAAGGGAAATTATTTGATACACTGCTAGTGGAGTTTTTAAAC
1 CAAGTGTACAAAATACTAACCCTTAAGAGAAATTATTTGGTACACTGCTAGTGGAGTTTTTAAAC
* * * * *
46043346 TCCCAAGTAGGGTCAGGGGTTGACAAGTGTTTTATAAAGGCATAGTAAAATAATAAAAAATAAAT
66 TCACAAGTAAGGTCAGGGGTTGACAAGTGTCTTATAAAGGTATAGTAAAATATTAAAAAATAAAT
46043411 ATTTTAAAAAAA
131 ATTTTAAAAAAA
46043423 ATACATATAA
Statistics
Matches: 270, Mismatches: 57, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
191 82 0.30
192 42 0.16
194 6 0.02
195 33 0.12
196 63 0.23
197 37 0.14
198 7 0.03
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31
Consensus pattern (194 bp):
CAAGTGTACAAAATACTAACCCTTAAGAGAAATTATTTGGTACACTGCTAGTGGAGTTTTTAAAC
TCACAAGTAAGGTCAGGGGTTGACAAGTGTCTTATAAAGGTATAGTAAAATATTAAAAAATAAAT
ATTTTAAAAAAAGACACATGCCAATTTTTCAAGGTTGTTTGTGAAATAAAAAAAGAGTACATTG
Found at i:46043488 original size:34 final size:34
Alignment explanation
Indices: 46043450--46043518 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
46043440 AAGACTACTT
46043450 TTGGAATAAAAACATACATTGTTCGTGTACTAAA
1 TTGGAATAAAAACATACATTGTTCGTGTACTAAA
46043484 TTGGAATAAAAACATACATTGTTCGTGTACTAAA
1 TTGGAATAAAAACATACATTGTTCGTGTACTAAA
46043518 T
1 T
46043519 AGTAACCCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (34 bp):
TTGGAATAAAAACATACATTGTTCGTGTACTAAA
Found at i:46053665 original size:20 final size:20
Alignment explanation
Indices: 46053621--46053667 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
46053611 GGCCGTGTGG
**
46053621 TTAGGCCGTGTGACATGGCC
1 TTAGGCCGTGTGACATGAAC
* *
46053641 CTAGGCCGTGTGGCATGAAC
1 TTAGGCCGTGTGACATGAAC
46053661 TTAGGCC
1 TTAGGCC
46053668 ATGTAACTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.17, C:0.26, G:0.34, T:0.23
Consensus pattern (20 bp):
TTAGGCCGTGTGACATGAAC
Found at i:46053794 original size:25 final size:25
Alignment explanation
Indices: 46053748--46053796 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
46053738 AGGGTTACAC
* *
46053748 GACCATGTCACACGCCCTTGTGCCT
1 GACCATGTCACACACCCGTGTGCCT
* *
46053773 GACCATGTCACATACTCGTGTGCC
1 GACCATGTCACACACCCGTGTGCC
46053797 AGCTTGTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.18, C:0.37, G:0.20, T:0.24
Consensus pattern (25 bp):
GACCATGTCACACACCCGTGTGCCT
Found at i:46057683 original size:69 final size:71
Alignment explanation
Indices: 46057591--46057774 Score: 241
Period size: 71 Copynumber: 2.6 Consensus size: 71
46057581 TGAACCTACA
* *
46057591 AGCCTTAGAATGACAGCTGGGAGCTTTTAACTATCACTAACTGTTTGGA-GGCTGCA-ATATT-A
1 AGCCTTAGAATGACAGCTAGGAGCTTTTAACTCTCACTAACTGTTTGGAGGGCTGCAGA-ATTGA
46057653 ACCTGAG
65 ACCTGAG
* * * *
46057660 AGCCTTAGAATGATAGCTAGGAGCTTTTAACTCTCGCTAACTATTTTGAGGGCTGCAGAATTGAA
1 AGCCTTAGAATGACAGCTAGGAGCTTTTAACTCTCACTAACTGTTTGGAGGGCTGCAGAATTGAA
*
46057725 CCTGTG
66 CCTGAG
* *
46057731 AGCCTTAGAATGACAG-TTGAGAGCTTTTAACTCTTACTAACTGT
1 AGCCTTAGAATGACAGCTAG-GAGCTTTTAACTCTCACTAACTGT
46057775 ATGGGTTTTT
Statistics
Matches: 99, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
69 43 0.43
70 12 0.12
71 44 0.44
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (71 bp):
AGCCTTAGAATGACAGCTAGGAGCTTTTAACTCTCACTAACTGTTTGGAGGGCTGCAGAATTGAA
CCTGAG
Found at i:46057742 original size:71 final size:71
Alignment explanation
Indices: 46057559--46057772 Score: 242
Period size: 69 Copynumber: 3.1 Consensus size: 71
46057549 GTGTTAAAAA
* * * * *
46057559 AACTATTTTG-GGGTTGTAGTATTGAACCT-ACAAGCCTTAGAATGACAGCTGGGAGCTTTTAAC
1 AACTATTTTGAGGGCTGCAGAATTGAACCTGA-GAGCCTTAGAATGACAGCTAGGAGCTTTTAAC
*
46057622 TATCACT
65 TCTCACT
* * *
46057629 AACTGTTTGGA-GGCTGCA-ATATT-AACCTGAGAGCCTTAGAATGATAGCTAGGAGCTTTTAAC
1 AACTATTTTGAGGGCTGCAGA-ATTGAACCTGAGAGCCTTAGAATGACAGCTAGGAGCTTTTAAC
*
46057691 TCTCGCT
65 TCTCACT
* *
46057698 AACTATTTTGAGGGCTGCAGAATTGAACCTGTGAGCCTTAGAATGACAG-TTGAGAGCTTTTAAC
1 AACTATTTTGAGGGCTGCAGAATTGAACCTGAGAGCCTTAGAATGACAGCTAG-GAGCTTTTAAC
*
46057762 TCTTACT
65 TCTCACT
46057769 AACT
1 AACT
46057773 GTATGGGTTT
Statistics
Matches: 120, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
69 48 0.40
70 29 0.24
71 43 0.36
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32
Consensus pattern (71 bp):
AACTATTTTGAGGGCTGCAGAATTGAACCTGAGAGCCTTAGAATGACAGCTAGGAGCTTTTAACT
CTCACT
Found at i:46063771 original size:42 final size:41
Alignment explanation
Indices: 46063705--46063799 Score: 136
Period size: 42 Copynumber: 2.3 Consensus size: 41
46063695 GGCCCTGCAT
* *
46063705 AGCTTGTGTGAGCAACATCGTGTAGTTTACATTCTGACCCAC
1 AGCTTGTGTGAGCAACATCATGTAGCTTACATTCTGA-CCAC
* *
46063747 AGCTCGTGTGAGCAACATCATGTAGCTTACATTTTGACCAC
1 AGCTTGTGTGAGCAACATCATGTAGCTTACATTCTGACCAC
*
46063788 AACTTGTGTGAG
1 AGCTTGTGTGAG
46063800 TAGGCCCATT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
41 14 0.30
42 33 0.70
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (41 bp):
AGCTTGTGTGAGCAACATCATGTAGCTTACATTCTGACCAC
Found at i:46072085 original size:31 final size:31
Alignment explanation
Indices: 46072060--46072267 Score: 301
Period size: 31 Copynumber: 6.7 Consensus size: 31
46072050 ATCCAATGAT
*
46072060 CAAATC-AATTCGGCAATATATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
* ** *
46072090 CAAATCAAATTCAGCAATGTATATTTATGTA
1 CAAATCAAATTCGGCAATGTATATCCATATA
* *
46072121 CAAATTAAATTCGGCAATGAATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
*
46072152 CAAATCAAATTCGGCAATGTATAACCATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
*
46072183 CAAATCAAATTCGGCAATGTATAACCATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
* *
46072214 CAAATCAAATTCAGCAATTTATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
*
46072245 CAAATCAAATTCGGAAATGTATA
1 CAAATCAAATTCGGCAATGTATA
46072268 AAACATATAC
Statistics
Matches: 157, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
30 6 0.04
31 151 0.96
ACGTcount: A:0.45, C:0.17, G:0.09, T:0.29
Consensus pattern (31 bp):
CAAATCAAATTCGGCAATGTATATCCATATA
Found at i:46075875 original size:27 final size:27
Alignment explanation
Indices: 46075830--46075915 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
46075820 TATAACGGTT
*
46075830 ATTTTACCCTATG-GTGGTATTTTAGTC
1 ATTTTACCCTATGAG-GGTATTTTGGTC
* *
46075857 ATTTTACCCTACGAGGGTATTTCGGTC
1 ATTTTACCCTATGAGGGTATTTTGGTC
**
46075884 A-TTTAGTCTATGAGGGTATTTTGGTC
1 ATTTTACCCTATGAGGGTATTTTGGTC
*
46075910 ACTTTA
1 ATTTTA
46075916 TTGACCTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.44
27 27 0.54
28 1 0.02
ACGTcount: A:0.20, C:0.15, G:0.21, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTATGAGGGTATTTTGGTC
Found at i:46082726 original size:26 final size:27
Alignment explanation
Indices: 46082682--46082755 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 27
46082672 TAATCTCCTA
** *
46082682 GGGGTATAACAGTCATTTTACCTTA-T
1 GGGGTATTTCAGTCATTTTACCTTACG
* *
46082708 GGGGTATTTCATTCGTTTTACCTTACG
1 GGGGTATTTCAGTCATTTTACCTTACG
46082735 GGGGTATTTCAGTCATTTTAC
1 GGGGTATTTCAGTCATTTTAC
46082756 ACCATGGGGG
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 21 0.52
27 19 0.47
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCTTACG
Found at i:46082764 original size:27 final size:27
Alignment explanation
Indices: 46082682--46082779 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
46082672 TAATCTCCTA
**
46082682 GGGGTATAACAGTCATTTTACCTTAT-
1 GGGGTATTTCAGTCATTTTACCTTATG
* * *
46082708 GGGGTATTTCATTCGTTTTACCTTACG
1 GGGGTATTTCAGTCATTTTACCTTATG
*
46082735 GGGGTATTTCAGTCATTTTACAC-CATG
1 GGGGTATTTCAGTCATTTTAC-CTTATG
46082762 GGGGTATTTC-GATCATTT
1 GGGGTATTTCAG-TCATTT
46082780 CATTGACCTC
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 22 0.37
27 37 0.62
28 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCTTATG
Found at i:46089030 original size:31 final size:31
Alignment explanation
Indices: 46089001--46089165 Score: 231
Period size: 31 Copynumber: 5.3 Consensus size: 31
46088991 AATCAATTTA
* * *
46089001 GCAATATATATCCATATACGAATCAAATTTG
1 GCAATGTATATCCATATACAAATCAAATTCG
* *
46089032 ACAATGTATATCTATATACAAATCAAATTCG
1 GCAATGTATATCCATATACAAATCAAATTCG
* *
46089063 GCAATGAATATCCATATACAAATCAAATTTG
1 GCAATGTATATCCATATACAAATCAAATTCG
* *
46089094 GTAATGTATAACCATATACAAATCAAATTCG
1 GCAATGTATATCCATATACAAATCAAATTCG
* *
46089125 GCAATGTATATCTATATACAAATCAAATTCA
1 GCAATGTATATCCATATACAAATCAAATTCG
46089156 GCAATGTATA
1 GCAATGTATA
46089166 AAACATATAC
Statistics
Matches: 117, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 117 1.00
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (31 bp):
GCAATGTATATCCATATACAAATCAAATTCG
Found at i:46089138 original size:93 final size:92
Alignment explanation
Indices: 46088990--46089161 Score: 263
Period size: 93 Copynumber: 1.9 Consensus size: 92
46088980 TCCAATGCTG
* * *
46088990 AAATCAATTTAGCAATATATATCCATATACGAATCAAATTTGACAATGTATATCTATATACAAAT
1 AAATCAATTTAGCAATATATAACCATATACAAATCAAATTCGACAATGTATATCTATATACAAAT
*
46089055 CAAATTCGGCAATGAATATCCATATAC
66 CAAATTCAGCAATGAATATCCATATAC
* * * *
46089082 AAATCAAATTTGGTAATGTATAACCATATACAAATCAAATTCGGCAATGTATATCTATATACAAA
1 AAATC-AATTTAGCAATATATAACCATATACAAATCAAATTCGACAATGTATATCTATATACAAA
46089147 TCAAATTCAGCAATG
65 TCAAATTCAGCAATG
46089162 TATAAAACAT
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
92 5 0.07
93 66 0.93
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.31
Consensus pattern (92 bp):
AAATCAATTTAGCAATATATAACCATATACAAATCAAATTCGACAATGTATATCTATATACAAAT
CAAATTCAGCAATGAATATCCATATAC
Found at i:46092528 original size:19 final size:19
Alignment explanation
Indices: 46092504--46092540 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
46092494 AAAGAAAAGT
46092504 ATAAAATTGAATTTGTACA
1 ATAAAATTGAATTTGTACA
46092523 ATAAAATTGAATTTGTAC
1 ATAAAATTGAATTTGTAC
46092541 TTTTAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (19 bp):
ATAAAATTGAATTTGTACA
Found at i:46093005 original size:34 final size:34
Alignment explanation
Indices: 46092962--46093032 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
46092952 AAATAAAATT
*
46092962 TTTATTTGTTAAAAATCAAATTTATCCTCCATGA
1 TTTATTTGTTAAAAATCAAACTTATCCTCCATGA
* *
46092996 TTTATTTGTTAAAAATTAAACTTATCCTTCATGA
1 TTTATTTGTTAAAAATCAAACTTATCCTCCATGA
46093030 TTT
1 TTT
46093033 TTCATTCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.34, C:0.13, G:0.06, T:0.48
Consensus pattern (34 bp):
TTTATTTGTTAAAAATCAAACTTATCCTCCATGA
Found at i:46094734 original size:77 final size:77
Alignment explanation
Indices: 46094637--46094793 Score: 242
Period size: 77 Copynumber: 2.0 Consensus size: 77
46094627 CAAGTTTGAT
* * * * *
46094637 ATTTTAGATCTCAGTTTTATCCATACATGTGATTTATAATGAACTCCATGCATGACTTGGCTATT
1 ATTTTAAATATCAGTTTTATCCATACATGTGATTTAGAATAAACTCCATGCATGACTTGACTATT
46094702 TATTTCTAATTA
66 TATTTCTAATTA
* *
46094714 ATTTTAAATATCAGTTTTATCCATACATTTGATTTGGAATAAACTCCATGCATGACTTGACTATT
1 ATTTTAAATATCAGTTTTATCCATACATGTGATTTAGAATAAACTCCATGCATGACTTGACTATT
*
46094779 TCTTTCTAATTA
66 TATTTCTAATTA
46094791 ATT
1 ATT
46094794 GATGATGCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
77 72 1.00
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (77 bp):
ATTTTAAATATCAGTTTTATCCATACATGTGATTTAGAATAAACTCCATGCATGACTTGACTATT
TATTTCTAATTA
Found at i:46097196 original size:13 final size:13
Alignment explanation
Indices: 46097180--46097204 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46097170 AAAAATATTT
46097180 TAAAAATAAAAAA
1 TAAAAATAAAAAA
46097193 TAAAAATAAAAA
1 TAAAAATAAAAA
46097205 TATTTTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
TAAAAATAAAAAA
Found at i:46104101 original size:27 final size:28
Alignment explanation
Indices: 46104063--46104132 Score: 90
Period size: 27 Copynumber: 2.5 Consensus size: 28
46104053 AATATATATT
*
46104063 TATATATTATATAATAAAACCCACGCATA
1 TATATATTATATAA-AAAACCCACGCAAA
*
46104092 TA-ATA-TATATACAACAACCCACGCAAA
1 TATATATTATATA-AAAAACCCACGCAAA
46104119 TATATATTATATAA
1 TATATATTATATAA
46104133 CACAACACCC
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
27 20 0.56
28 8 0.22
29 8 0.22
ACGTcount: A:0.50, C:0.17, G:0.03, T:0.30
Consensus pattern (28 bp):
TATATATTATATAAAAAACCCACGCAAA
Found at i:46104130 original size:31 final size:31
Alignment explanation
Indices: 46104063--46104194 Score: 93
Period size: 29 Copynumber: 4.5 Consensus size: 31
46104053 AATATATATT
*
46104063 TATATATTATATA-ATAA-AACCCACGC--A
1 TATATATTATATATACAACAACCCACGCAAA
46104090 TATA-A-TATATATACAACAACCCACGCAAA
1 TATATATTATATATACAACAACCCACGCAAA
* *
46104119 TATATATTATATA-AC-ACAACACC-CACTAA
1 TATATATTATATATACAACAAC-CCACGCAAA
* * * * *
46104148 TATATATTTTGTATACAACAGAACCATGCATA
1 TATATATTATATATACAACA-ACCCACGCAAA
* *
46104180 TGTATAGTATATATA
1 TATATATTATATATA
46104195 TTATATAAAA
Statistics
Matches: 80, Mismatches: 14, Indels: 17
0.72 0.13 0.15
Matches are distributed among these distances:
25 6 0.08
26 4 0.05
27 13 0.16
29 25 0.31
30 7 0.09
31 11 0.14
32 14 0.17
ACGTcount: A:0.46, C:0.18, G:0.05, T:0.30
Consensus pattern (31 bp):
TATATATTATATATACAACAACCCACGCAAA
Found at i:46104137 original size:29 final size:29
Alignment explanation
Indices: 46104063--46104155 Score: 95
Period size: 29 Copynumber: 3.3 Consensus size: 29
46104053 AATATATATT
* * *
46104063 TATATATTATATAATAAAACCCACGCATA
1 TATATATTATATAACACAACCCACGCAAA
46104092 TA-ATA-TATAT-ACAACAACCCACGCAAA
1 TATATATTATATAAC-ACAACCCACGCAAA
* *
46104119 TATATATTATATAACACAACACC-CACTAA
1 TATATATTATATAACACAAC-CCACGCAAA
46104148 TATATATT
1 TATATATT
46104156 TTGTATACAA
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
26 1 0.02
27 19 0.35
28 6 0.11
29 24 0.44
30 4 0.07
ACGTcount: A:0.48, C:0.20, G:0.02, T:0.29
Consensus pattern (29 bp):
TATATATTATATAACACAACCCACGCAAA
Found at i:46104724 original size:18 final size:19
Alignment explanation
Indices: 46104701--46104742 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
46104691 TGTTTTAAAG
46104701 TTTATAG-T-TTAATTTTAT
1 TTTATAGATATTAATTTT-T
46104719 TTTATAGATATTAATTTTT
1 TTTATAGATATTAATTTTT
46104738 TTTAT
1 TTTAT
46104743 CTTTTAAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.32
19 7 0.32
20 8 0.36
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (19 bp):
TTTATAGATATTAATTTTT
Found at i:46107229 original size:18 final size:18
Alignment explanation
Indices: 46107192--46107254 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 18
46107182 TCTTTCTAGT
*
46107192 TTATTTTTATTT-ATTAAA
1 TTATTTTTCTTTAATT-AA
46107210 TTATTTTTCTTTAATTAA
1 TTATTTTTCTTTAATTAA
*
46107228 TT-TTTATT-TTTAAATTTA
1 TTATTT-TTCTTT-AATTAA
46107246 TTATTTTTC
1 TTATTTTTC
46107255 ATTATCTCGG
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
17 6 0.16
18 26 0.68
19 6 0.16
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (18 bp):
TTATTTTTCTTTAATTAA
Found at i:46107249 original size:15 final size:14
Alignment explanation
Indices: 46107194--46107253 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 14
46107184 TTTCTAGTTT
46107194 ATTTTTATTTATTAA
1 ATTTTTATTT-TTAA
46107209 ATTATTT-TTCTTTAATTA
1 ATT-TTTATT-TTT-A--A
46107227 ATTTTTATTTTTAA
1 ATTTTTATTTTTAA
46107241 ATTTATTATTTTT
1 ATTT-TTATTTTT
46107254 CATTATCTCG
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
14 5 0.13
15 15 0.39
16 6 0.16
17 6 0.16
18 6 0.16
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (14 bp):
ATTTTTATTTTTAA
Found at i:46109250 original size:50 final size:49
Alignment explanation
Indices: 46109196--46109575 Score: 196
Period size: 50 Copynumber: 7.6 Consensus size: 49
46109186 ACATCGCCAA
* * *
46109196 GGAAATAAGATTCGCCGTTGTGGCTTCAATCTTCTTAATTGCAATGTCGG
1 GGAAATAAGATTCGCCGTCGTAGCTTCAATCTT-TTAATTGCAATGTCAG
* * ** * * ** *
46109246 GGAAATCAA-ATTCGCCATCGCAGCTTCAATCTATTCCACTACACCGCCAG
1 GGAAAT-AAGATTCGCCGTCGTAGCTTCAATCT-TTTAATTGCAATGTCAG
* * * * * *
46109296 GGAAGTAATATTCGCTGTTGTGGCTTCAATCTTTTTAATTGCAATATC-G
1 GGAAATAAGATTCGCCGTCGTAGCTTCAATC-TTTTAATTGCAATGTCAG
* * ** * **
46109345 GGAAAATCAGATTCACCGTCGTAGCTTCAATCTGTTCCACTGCACCG-CTA-
1 GG-AAATAAGATTCGCCGTCGTAGCTTCAATCT-TTTAATTGCAATGTC-AG
* * * * *
46109395 AGAAAGTAAGATTCGCCGTTGTGGCTTCAGTCTTTTTAATTGCAATGT-GG
1 GGAAA-TAAGATTCGCCGTCGTAGCTTCAATC-TTTTAATTGCAATGTCAG
* * ** * ** *
46109445 GAGAAATCAGATTTGCCGTCGTAGCTTCAATCTATTCCACTGCACCG-CTAA
1 G-GAAATAAGATTCGCCGTCGTAGCTTCAATCT-TTTAATTGCAATGTC-AG
* * * * *
46109496 GGAAGTAAGATTCACCGTTGTAGCTTAAATCTTTTTAATTGTAATGTCAG
1 GGAAATAAGATTCGCCGTCGTAGCTTCAATC-TTTTAATTGCAATGTCAG
* *
46109546 GGAAACAAGATTCGCCGTCGTGGCTTCAAT
1 GGAAATAAGATTCGCCGTCGTAGCTTCAAT
46109576 TTGTTCCACT
Statistics
Matches: 229, Mismatches: 83, Indels: 36
0.66 0.24 0.10
Matches are distributed among these distances:
49 11 0.05
50 206 0.90
51 12 0.05
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (49 bp):
GGAAATAAGATTCGCCGTCGTAGCTTCAATCTTTTAATTGCAATGTCAG
Found at i:46109259 original size:100 final size:100
Alignment explanation
Indices: 46109119--46109630 Score: 625
Period size: 100 Copynumber: 5.1 Consensus size: 100
46109109 GATTCGTCGT
* * * * * * *
46109119 CTTCAACCTGTTTAACTGTAATGTCGGGGAAA-CAAGATTCGCTGTCGTAGCTTCGACCTGTTCC
1 CTTCAATCTTTTTAATTGCAATGTCGGGGAAATCAA-ATTCGCCGTCGTAGCTTCAATCTGTTCC
* *
46109183 ACTACATCGCCAAGGAAATAAGATTCGCCGTTGTGG
65 ACTACACCGCCAAGGAAGTAAGATTCGCCGTTGTGG
* * * *
46109219 CTTCAATCTTCTTAATTGCAATGTCGGGGAAATCAAATTCGCCATCGCAGCTTCAATCTATTCCA
1 CTTCAATCTTTTTAATTGCAATGTCGGGGAAATCAAATTCGCCGTCGTAGCTTCAATCTGTTCCA
* * *
46109284 CTACACCGCCAGGGAAGTAATATTCGCTGTTGTGG
66 CTACACCGCCAAGGAAGTAAGATTCGCCGTTGTGG
* * * *
46109319 CTTCAATCTTTTTAATTGCAATATCGGGAAAATCAGATTCACCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTCGGGGAAATCAAATTCGCCGTCGTAGCTTCAATCTGTTCCA
* * *
46109384 CTGCACCGCTAAGAAAGTAAGATTCGCCGTTGTGG
66 CTACACCGCCAAGGAAGTAAGATTCGCCGTTGTGG
* * * *
46109419 CTTCAGTCTTTTTAATTGCAATGT-GGGAGAAATCAGATTTGCCGTCGTAGCTTCAATCTATTCC
1 CTTCAATCTTTTTAATTGCAATGTCGGG-GAAATCAAATTCGCCGTCGTAGCTTCAATCTGTTCC
* * * *
46109483 ACTGCACCGCTAAGGAAGTAAGATTCACCGTTGTAG
65 ACTACACCGCCAAGGAAGTAAGATTCGCCGTTGTGG
* * * * *
46109519 CTTAAATCTTTTTAATTGTAATGTCAGGGAAA-CAAGATTCGCCGTCGTGGCTTCAATTTGTTCC
1 CTTCAATCTTTTTAATTGCAATGTCGGGGAAATCAA-ATTCGCCGTCGTAGCTTCAATCTGTTCC
* * *
46109583 ACTACACCGCCATGGGAGTAAGATTCGCCGTCGTGG
65 ACTACACCGCCAAGGAAGTAAGATTCGCCGTTGTGG
46109619 CTTCAATCTTTT
1 CTTCAATCTTTT
46109631 CATTCGCTGT
Statistics
Matches: 352, Mismatches: 56, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
99 5 0.01
100 342 0.97
101 5 0.01
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (100 bp):
CTTCAATCTTTTTAATTGCAATGTCGGGGAAATCAAATTCGCCGTCGTAGCTTCAATCTGTTCCA
CTACACCGCCAAGGAAGTAAGATTCGCCGTTGTGG
Found at i:46109849 original size:50 final size:48
Alignment explanation
Indices: 46109743--46109849 Score: 106
Period size: 50 Copynumber: 2.1 Consensus size: 48
46109733 ACGCCAGGGA
* * *
46109743 GATAAGATTCATCGTCATGGCTTCAATCTACTCCGCTACAACGCCAGG
1 GATAAGATTCACCGTCATGGCTTCAATCTACTCCACTACAACGCAAGG
* ** * *
46109791 GAAGTAAGATTCACCGTCGTGGCTTCAATCTTTTCCATTGCAACGTCAAGG
1 G-A-TAAGATTCACCGTCATGGCTTCAATCTACTCCACTACAACG-CAAGG
46109842 CGATAAGA
1 -GATAAGA
46109850 CTAATGTCTT
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
48 1 0.02
49 1 0.02
50 39 0.83
51 5 0.11
52 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
GATAAGATTCACCGTCATGGCTTCAATCTACTCCACTACAACGCAAGG
Found at i:46109919 original size:45 final size:44
Alignment explanation
Indices: 46109870--46110008 Score: 120
Period size: 44 Copynumber: 3.1 Consensus size: 44
46109860 CGATCTGCTT
* *
46109870 CACTGCCAGCACAAGAAGGCGAGATCTGCTATCTTCAACGTACTC
1 CACTGCCAGCACAAGAAGACAAGATCTGCTATCTTCAAC-TACTC
* * * * * * *
46109915 CACTG-CTGCTCAAGGAGACAAG-GCTGGTATCTTCGATCTACTT
1 CACTGCCAGCACAAGAAGACAAGATCTGCTATCTTC-AACTACTC
** * *
46109958 CACTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTC
1 CACTGCCAGCACAAGAAGACAAGATCTGCTATCTTCAA-CTACTC
46110003 CACTGC
1 CACTGC
46110009 TGCTCAGGGA
Statistics
Matches: 70, Mismatches: 20, Indels: 8
0.71 0.20 0.08
Matches are distributed among these distances:
43 19 0.27
44 26 0.37
45 25 0.36
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (44 bp):
CACTGCCAGCACAAGAAGACAAGATCTGCTATCTTCAACTACTC
Found at i:46109960 original size:88 final size:88
Alignment explanation
Indices: 46109856--46110028 Score: 256
Period size: 88 Copynumber: 2.0 Consensus size: 88
46109846 AAGACTAATG
* * * * *
46109856 TCTTCGATCTGCTTCACTGCCAGCACAAGAAGGCGAGATCTGCTATCTTCAACGTACTCCACTGC
1 TCTTCGATCTACTTCACTGCCAACACAAGAAGACAAGATCTGCTATCTTCAACCTACTCCACTGC
46109921 TGCTCAAGGAGACAAGGCTGGTA
66 TGCTCAAGGAGACAAGGCTGGTA
* * *
46109944 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
1 TCTTCGATCTACTTCACTGCCAACACAAGAAGACAAGATCTGCTATCTTCAACCTACTCCACTGC
* *
46110009 TGCTCAGGGAGATAAGGCTG
66 TGCTCAAGGAGACAAGGCTG
46110029 AAGTTTCACC
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 75 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (88 bp):
TCTTCGATCTACTTCACTGCCAACACAAGAAGACAAGATCTGCTATCTTCAACCTACTCCACTGC
TGCTCAAGGAGACAAGGCTGGTA
Found at i:46125012 original size:29 final size:29
Alignment explanation
Indices: 46124938--46125030 Score: 86
Period size: 29 Copynumber: 3.3 Consensus size: 29
46124928 CATATATATT
* * * *
46124938 TATATATTATAGAATAAAACCCACGCATA
1 TATATATTATATAACACAACCCACGCAAA
46124967 TA-ATA-TATAT-ACAACAACCCACGCAAA
1 TATATATTATATAAC-ACAACCCACGCAAA
* *
46124994 TATATATTATATAACACAACACC-CACTAA
1 TATATATTATATAACACAAC-CCACGCAAA
46125023 TATATATT
1 TATATATT
46125031 CTGTATACAA
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
26 1 0.02
27 18 0.34
28 6 0.11
29 24 0.45
30 4 0.08
ACGTcount: A:0.48, C:0.20, G:0.03, T:0.28
Consensus pattern (29 bp):
TATATATTATATAACACAACCCACGCAAA
Found at i:46125597 original size:18 final size:19
Alignment explanation
Indices: 46125574--46125615 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
46125564 TGTTTTAAAG
46125574 TTTATAG-T-TTAATTTTAT
1 TTTATAGATATTAATTTT-T
46125592 TTTATAGATATTAATTTTT
1 TTTATAGATATTAATTTTT
46125611 TTTAT
1 TTTAT
46125616 CTTTTAAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.32
19 7 0.32
20 8 0.36
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (19 bp):
TTTATAGATATTAATTTTT
Found at i:46138249 original size:18 final size:19
Alignment explanation
Indices: 46138228--46138289 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 19
46138218 TCTTTCTAGT
46138228 TTATTTTTATTT-ATTAAA
1 TTATTTTTATTTAATTAAA
* *
46138246 TTATTTTTCTTTAATTAAT
1 TTATTTTTATTTAATTAAA
* *
46138265 TTATATTT-TTAAATT-AA
1 TTATTTTTATTTAATTAAA
46138282 TTATTTTT
1 TTATTTTT
46138290 CATTATCTCG
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
17 8 0.22
18 17 0.46
19 12 0.32
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTTTTATTTAATTAAA
Found at i:46158741 original size:28 final size:28
Alignment explanation
Indices: 46158702--46158759 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
46158692 GTGATATTTT
*
46158702 ATAATAATTAATA-TT-ATATATAAACTTA
1 ATAATAAATAATACTTAAT-TA-AAACTTA
46158730 ATAATAAATAATACTTAATTAAAACTTA
1 ATAATAAATAATACTTAATTAAAACTTA
46158758 AT
1 AT
46158760 TTAAATTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 21 0.78
29 4 0.15
30 2 0.07
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (28 bp):
ATAATAAATAATACTTAATTAAAACTTA
Found at i:46162165 original size:44 final size:44
Alignment explanation
Indices: 46162117--46162575 Score: 253
Period size: 44 Copynumber: 10.5 Consensus size: 44
46162107 GGAGTAGGTC
* * *
46162117 GAAGATAGCAGACCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
1 GAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATT
** * *
46162161 GAAGACGGTAAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATT
1 GAAGATAGCAAATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATT
* ** ** * * * *
46162205 TAAG-CCGCCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGCAGGTT
1 GAAGATAG-CAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATT
* *
46162249 GAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC
1 GAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATT
* * *
46162293 GAAGATGGCAAATCTTATATTTCC-AAG-A-TAGTGGGAAGCAGATT
1 GAAGATAGCAAATCTTAT-CTCCCTAAGCAGTAGT-GG-AGCAGATT
* ** * ** * * * * *
46162337 TAAGCCACCAAGCCTTGTTTCCCTGAA-CAGCAG-GAGAGTAGGTT
1 GAAGATAGCAAATCTTATCTCCCT-AAGCAGTAGTG-GAGCAGATT
*
46162381 GAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
1 GAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATT
** *
46162425 GAAGACGGCAAATCTTATCTTTCC-AAG-A-TAGTAGGAAGCAGATT
1 GAAGATAGCAAATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATT
* * * ** * * * * *
46162469 TAAGCTACCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGTAGGTT
1 GAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATT
* *
46162513 GAAGATTA-CAAATCTTATCTCCCTAAGCCGTAGTGGAGCAGATC
1 GAAGA-TAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATT
* *
46162557 AAAGACA-CAAATCTTATCT
1 GAAGATAGCAAATCTTATCT
46162576 TTCCAAGATA
Statistics
Matches: 303, Mismatches: 87, Indels: 51
0.69 0.20 0.12
Matches are distributed among these distances:
42 12 0.04
43 36 0.12
44 225 0.74
45 23 0.08
46 7 0.02
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.24
Consensus pattern (44 bp):
GAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATT
Found at i:46162329 original size:132 final size:132
Alignment explanation
Indices: 46162092--46162686 Score: 892
Period size: 132 Copynumber: 4.5 Consensus size: 132
46162082 TCGTAAAATG
* * * *
46162092 TCCCTGAGCAACAGCGGAGTAGGTCGAAGATAGCAGACCTTATCTCCCTAAGCAGTAGTGGAGCA
1 TCCCTGAGCAGCAGCGGAGTAGGTTGAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCA
* *
46162157 GATCGAAGACGGTAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCGCCAAGCCTTG
66 GATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
46162222 TC
131 TC
* * *
46162224 TCCCTGAGCAGCAGTGGAGCAGGTTGAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGTA
1 TCCCTGAGCAGCAGCGGAGTAGGTTGAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCA
* *
46162289 GATCGAAGATGGCAAATCTTATATTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
66 GATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
*
46162354 TT
131 TC
*
46162356 TCCCTGAACAGCAG-GAGAGTAGGTTGAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGC
1 TCCCTGAGCAGCAGCG-GAGTAGGTTGAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGC
* *
46162420 AGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTAGGAAGCAGATTTAAGCTACCAAGCCTT
65 AGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTT
46162485 GTC
130 GTC
* *
46162488 TCCCTAAGCAGCAGCGGAGTAGGTTGAAGATTA-CAAATCTTATCTCCCTAAGCCGTAGTGGAGC
1 TCCCTGAGCAGCAGCGGAGTAGGTTGAAGA-TAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGC
* *
46162552 AGATCAAAGAC-ACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTT
65 AGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTT
46162616 GTC
130 GTC
* * * * ** *
46162619 TCCTTGAGCAGTAGCGGAGTAGGTTGAAGATTA-AAAATCCTATCTCCCTCAAGTTGCAGTGGAG
1 TCCCTGAGCAGCAGCGGAGTAGGTTGAAGA-TAGCAAATCTTATCTCCCT-AAGCAGTAGTGGAG
46162683 CAGA
64 CAGA
46162687 CTAAGTATAG
Statistics
Matches: 424, Mismatches: 35, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
131 98 0.23
132 323 0.76
133 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (132 bp):
TCCCTGAGCAGCAGCGGAGTAGGTTGAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCA
GATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
TC
Found at i:46164750 original size:19 final size:21
Alignment explanation
Indices: 46164716--46164762 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 21
46164706 ATAATACATT
46164716 TTTTAAATTGTTATCAATATG
1 TTTTAAATTGTTATCAATATG
46164737 TTTTAAA-T-TTATCAATAT-
1 TTTTAAATTGTTATCAATATG
46164755 TATTTAAA
1 T-TTTAAA
46164763 AATACATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.04
19 16 0.64
20 1 0.04
21 7 0.28
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTAAATTGTTATCAATATG
Found at i:46173877 original size:79 final size:81
Alignment explanation
Indices: 46173741--46173925 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
46173731 TTGAATGATG
*
46173741 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
46173805 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
46173820 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
46173882 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
46173900 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46173926 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:46173939 original size:40 final size:40
Alignment explanation
Indices: 46173742--46173925 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
46173732 TGAATGATGT
* * * *
46173742 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
46173782 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
46173822 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
46173860 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
46173901 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
46173926 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:46173947 original size:79 final size:79
Alignment explanation
Indices: 46173794--46173958 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
46173784 GGACTAAGAT
* **
46173794 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
46173859 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
46173873 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
46173936 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
46173952 CCGAAGG
1 CCGAAGG
46173959 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:46175612 original size:27 final size:27
Alignment explanation
Indices: 46175579--46175630 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
46175569 AAAATAATTA
46175579 AAATTAAATATGTTAATAA-TTAAGTGT
1 AAATTAAATAT-TTAATAATTTAAGTGT
* *
46175606 AAATTAATTATTTTATAATTTAAGT
1 AAATTAAATATTTAATAATTTAAGT
46175631 ATGAATTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (27 bp):
AAATTAAATATTTAATAATTTAAGTGT
Found at i:46175637 original size:27 final size:27
Alignment explanation
Indices: 46175579--46175637 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
46175569 AAAATAATTA
*
46175579 AAATTAAATATGTTAATAATTAAGTGT
1 AAATTAAATATGTTAATAATTAAGTAT
* *
46175606 AAATTAATTAT-TTTATAATTTAAGTAT
1 AAATTAAATATGTTAATAA-TTAAGTAT
*
46175633 GAATT
1 AAATT
46175638 TCGATAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (27 bp):
AAATTAAATATGTTAATAATTAAGTAT
Found at i:46179210 original size:51 final size:50
Alignment explanation
Indices: 46179090--46179280 Score: 213
Period size: 51 Copynumber: 3.8 Consensus size: 50
46179080 TATTATCATT
* * * *
46179090 CGATACACGTAGTAGTCTTCACATAGTACTACACATGTGATCAAACTTTC
1 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAACCTTC
* *
46179140 CGATTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCTTC
1 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAA-CCTTC
* * * * * * *
46179191 CGGTACACATAGTAGCCTGCACATACTACTGCACATGTGATCATTATCTAT-
1 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCA-AACCT-TC
* *
46179242 CGATACATGTAGTAGCCTGCACTTAGTACTACACACGTG
1 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTG
46179281 TTTATAGGCA
Statistics
Matches: 116, Mismatches: 22, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
50 40 0.34
51 74 0.64
52 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (50 bp):
CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAACCTTC
Found at i:46179279 original size:102 final size:101
Alignment explanation
Indices: 46179093--46179280 Score: 261
Period size: 102 Copynumber: 1.9 Consensus size: 101
46179083 TATCATTCGA
* * * * * *
46179093 TACACGTAGTAGTCTTCACATAGTACTACACATGTGATCAAACTTTCCGATTCACGTAGTAGCCT
1 TACACATAGTAGCCTGCACATACTACTACACATGTGATCAAACTATCCGATACACGTAGTAGCCT
46179158 GCACATAGTACTACACACGTGACCAAAGCCTTCCGG
66 GCACATAGTACTACACACGTGACCAAAGCCTTCCGG
* * *
46179194 TACACATAGTAGCCTGCACATACTACTGCACATGTGATCATTATCTAT-CGATACATGTAGTAGC
1 TACACATAGTAGCCTGCACATACTACTACACATGTGATCA--AACTATCCGATACACGTAGTAGC
*
46179258 CTGCACTTAGTACTACACACGTG
64 CTGCACATAGTACTACACACGTG
46179281 TTTATAGGCA
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
101 35 0.47
102 36 0.48
103 4 0.05
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (101 bp):
TACACATAGTAGCCTGCACATACTACTACACATGTGATCAAACTATCCGATACACGTAGTAGCCT
GCACATAGTACTACACACGTGACCAAAGCCTTCCGG
Found at i:46187933 original size:53 final size:53
Alignment explanation
Indices: 46187850--46187955 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
46187840 AAGTTTATGT
46187850 GTAGATTACATATTCATTTCTTAATCTTAGTACTTTTCACCATACAAATCACA
1 GTAGATTACATATTCATTTCTTAATCTTAGTACTTTTCACCATACAAATCACA
*
46187903 GTAGATTACATATTCATTTCTTAATTTTAGTACTTTTCACCATACAAATCACA
1 GTAGATTACATATTCATTTCTTAATCTTAGTACTTTTCACCATACAAATCACA
46187956 TTCTCTCTTA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.41
Consensus pattern (53 bp):
GTAGATTACATATTCATTTCTTAATCTTAGTACTTTTCACCATACAAATCACA
Found at i:46188860 original size:3 final size:3
Alignment explanation
Indices: 46188852--46188904 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
46188842 CTACTTCTTA
46188852 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
46188900 ATC AT
1 ATC AT
46188905 TATTATACTC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:46190504 original size:22 final size:21
Alignment explanation
Indices: 46190476--46190518 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 21
46190466 CTTCAGCAAG
46190476 ACTAAGGCCCCGTTCTCCTTT
1 ACTAAGGCCCCGTTCTCCTTT
46190497 NACTAAGGCCCCGTTCTCCTTT
1 -ACTAAGGCCCCGTTCTCCTTT
46190519 GCTTCTTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.14, C:0.37, G:0.14, T:0.33
Consensus pattern (21 bp):
ACTAAGGCCCCGTTCTCCTTT
Found at i:46191386 original size:13 final size:13
Alignment explanation
Indices: 46191349--46191389 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
46191339 TTTTTCTTTA
46191349 CTGCTTTGCTCTG
1 CTGCTTTGCTCTG
46191362 CT--TTATGCCTCTG
1 CTGCTT-TG-CTCTG
46191375 CTGCTTTGCTCTG
1 CTGCTTTGCTCTG
46191388 CT
1 CT
46191390 TTGCTTTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
11 2 0.08
12 2 0.08
13 16 0.67
14 2 0.08
15 2 0.08
ACGTcount: A:0.02, C:0.32, G:0.20, T:0.46
Consensus pattern (13 bp):
CTGCTTTGCTCTG
Found at i:46191532 original size:12 final size:12
Alignment explanation
Indices: 46191515--46191539 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46191505 TATTTTAGAG
46191515 TTTACTGATTGC
1 TTTACTGATTGC
46191527 TTTACTGATTGC
1 TTTACTGATTGC
46191539 T
1 T
46191540 AGATCCCCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (12 bp):
TTTACTGATTGC
Found at i:46194867 original size:72 final size:72
Alignment explanation
Indices: 46194817--46195055 Score: 347
Period size: 72 Copynumber: 3.3 Consensus size: 72
46194807 CAATGCTAAA
* *
46194817 CTAGTTTTATCAATAGTTATTTATGTTTAGTTTTTGGATATTGAATTTATGTTA-TACTTATTTA
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATG-TACTACTTATTTA
46194881 TGTGTAAT
65 TGTGTAAT
* * *
46194889 CTAGTTTTATCAATGGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATATTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTACTACTTATTTAT
46194954 GTGTAAT
66 GTGTAAT
* **
46194961 CTAGTTTTATTAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTTTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTACTACTTATTTAT
** *
46195026 -ACTAAA
66 GTGTAAT
*
46195032 ATAGTTTTATCAATAGTTGTTTAT
1 CTAGTTTTATCAATAGTTGTTTAT
46195056 ATATGATTTT
Statistics
Matches: 152, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
71 26 0.17
72 126 0.83
ACGTcount: A:0.25, C:0.05, G:0.15, T:0.56
Consensus pattern (72 bp):
CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTACTACTTATTTAT
GTGTAAT
Found at i:46196480 original size:12 final size:12
Alignment explanation
Indices: 46196465--46196490 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46196455 TGACAACGAC
46196465 GATGATGACGGT
1 GATGATGACGGT
46196477 GATGATGACGGT
1 GATGATGACGGT
46196489 GA
1 GA
46196491 ATCAAACAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.08, G:0.42, T:0.23
Consensus pattern (12 bp):
GATGATGACGGT
Found at i:46197125 original size:13 final size:13
Alignment explanation
Indices: 46197107--46197170 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
46197097 ACACTAAAAA
*
46197107 TTTTCAAAACCAC
1 TTTTCAAAAGCAC
*
46197120 TTTTCAACAGCAC
1 TTTTCAAAAGCAC
* *
46197133 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
*
46197146 TTTTTAAAAGCAC
1 TTTTCAAAAGCAC
46197159 TTTTCAAAAGCA
1 TTTTCAAAAGCA
46197171 ATGAAGAACT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 44 1.00
ACGTcount: A:0.34, C:0.27, G:0.06, T:0.33
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:46203487 original size:22 final size:23
Alignment explanation
Indices: 46203462--46203513 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
46203452 ATGAGTTAAT
*
46203462 ATATTATACA-AATAATATTATA
1 ATATTATAAATAATAATATTATA
* *
46203484 ATA-TAAAAATAATAATTTTATA
1 ATATTATAAATAATAATATTATA
*
46203506 TTATTATA
1 ATATTATA
46203514 TTATGTAATG
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
21 4 0.17
22 16 0.70
23 3 0.13
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
ATATTATAAATAATAATATTATA
Found at i:46203506 original size:19 final size:19
Alignment explanation
Indices: 46203461--46203497 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
46203451 TATGAGTTAA
* *
46203461 TATATTATACAAATAATAT
1 TATAATATAAAAATAATAT
46203480 TATAATATAAAAATAATA
1 TATAATATAAAAATAATA
46203498 ATTTTATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
TATAATATAAAAATAATAT
Found at i:46213197 original size:16 final size:15
Alignment explanation
Indices: 46213172--46213208 Score: 65
Period size: 16 Copynumber: 2.4 Consensus size: 15
46213162 TGGGTTCTTG
46213172 TTTTTTTTATTTTAT
1 TTTTTTTTATTTTAT
46213187 TTTTCTTTTATTTTAT
1 TTTT-TTTTATTTTAT
46213203 TTTTTT
1 TTTTTT
46213209 CTTTTTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTTTTTTATTTTAT
Found at i:46213640 original size:12 final size:12
Alignment explanation
Indices: 46213610--46213684 Score: 71
Period size: 12 Copynumber: 6.2 Consensus size: 12
46213600 TTCTATTGAT
*
46213610 TTTTTAATATTA
1 TTTTTATTATTA
* *
46213622 -GTTTATTAATA
1 TTTTTATTATTA
46213633 TTTTTATTATTA
1 TTTTTATTATTA
*
46213645 GCCTTTTATTATTA
1 --TTTTTATTATTA
*
46213659 TTATTATTATTA
1 TTTTTATTATTA
*
46213671 TTATTATTATTA
1 TTTTTATTATTA
46213683 TT
1 TT
46213685 ATTACTTACT
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
11 8 0.15
12 33 0.63
14 11 0.21
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (12 bp):
TTTTTATTATTA
Found at i:46213656 original size:3 final size:3
Alignment explanation
Indices: 46213650--46213688 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
46213640 TATTAGCCTT
46213650 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
46213689 CTTACTTACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:46213695 original size:4 final size:4
Alignment explanation
Indices: 46213686--46213730 Score: 81
Period size: 4 Copynumber: 11.2 Consensus size: 4
46213676 ATTATTATTA
*
46213686 TTAC TTAC TTAC TTAC TTAC TTAC TTAC TTAC TTGC TTAC TTAC T
1 TTAC TTAC TTAC TTAC TTAC TTAC TTAC TTAC TTAC TTAC TTAC T
46213731 AGCTCTATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.22, C:0.24, G:0.02, T:0.51
Consensus pattern (4 bp):
TTAC
Found at i:46220823 original size:129 final size:129
Alignment explanation
Indices: 46220593--46221987 Score: 2104
Period size: 129 Copynumber: 10.8 Consensus size: 129
46220583 ACAGATCAGA
* * * * * *
46220593 GAAATTACAAATCTTGTCTCCCTAAGCAGTAGCGGAACAGATCGAAGGCTGCAAATCTTATTTTC
1 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
* * * *
46220658 AAGTGTAAGGAAGCAGATTTAAGCGACAAGTCCTATATCCCTGGTCAGCGGTAGAATAGGTTAG
66 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGG
* *
46220722 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGGCGGCAAATCTTATCTTG
1 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
*
46220787 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGAAATAGGTTGG
66 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGG
* **
46220851 GAAATTACAGATCTTGTTTCCCTAAGCAATAGCGGAGCAGATCGAAGGTGGCAAATCTTATCTTC
1 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
*
46220916 AAGTGTAAGGAAGCAGATTTAAGCTACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGG
66 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGG
46220980 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
1 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
** * *
46221045 AAGAATAAGGAAGCAGATTTAAGCCACAAGTCCTATTTCTCTGGTCAGCAGTGGAATAGGTTGG
66 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGG
* *
46221109 GAAATTACAGATCTTGTCTCTCTAAGCAATAGCGGAGCAGATCGAATACGGCAAATCTTATCTTC
1 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
* * *
46221174 AAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATTTCTCC-GGTCAGCAGTGGAATAGGATGG
66 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATC-CCTGGTCAGCAGTGGAATAGGTTGG
*
46221238 GAAATTACAGATCTTGTCTCTCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
1 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
* ** * **
46221303 AAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTACCTCTCTGGTCAGCAGTGGAATAGG-TCA
66 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGG
* *
46221366 GAAATTACAGATCTTGTATCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
1 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
* ** * **
46221431 AAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTACCTCTCTGGTCAGCAGTGGAATAGG-TCA
66 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGG
* * *
46221494 GAAATTACAGATCTTGTATCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTC
1 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
* * *
46221559 AAGTGTAAAGAAGCAGATTTAAGCCACAAGTCCTATATCACTGGTCAGTAGTGGAATAGGTTGG
66 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGG
* *
46221623 GAAATTACAGATCTTGTCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTC
1 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
* *
46221688 AAGTGTAAGGAAGCAGATTTAAGCCACAACTCCTATATCCCTGGTCAGCAGTAGAATAGGTTGG
66 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGG
* * *
46221752 GAAATTAACCG-TCTTGTCTCCTTAAGCAATAGCGGAGCAGATCGAAGATGGCAAATCTTATCTT
1 GAAATT-ACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTT
* *
46221816 CAAGTGTAAGGAATCAGATTTGAGCCACAAGTCCTATATCCCTGGTCAGC-GATGGAATAGGTT-
65 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAG-TGGAATAGGTTG
46221879 G
129 G
* * * **
46221880 GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGAT-TAATGACAGTGAATCTTATCTT
1 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAA-GACGGCAAATCTTATCTT
* * * *
46221944 CAAGAGTAAGGAAGCAGATTGAAGCCGATAA-TCCTATCTCCCTG
65 CAAGTGTAAGGAAGCAGATTTAAGCC-ACAAGTCCTATATCCCTG
46221988 AAGTTGTAGT
Statistics
Matches: 1180, Mismatches: 78, Indels: 17
0.93 0.06 0.01
Matches are distributed among these distances:
127 5 0.00
128 330 0.28
129 841 0.71
130 4 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (129 bp):
GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGG
Found at i:46221685 original size:514 final size:514
Alignment explanation
Indices: 46220593--46221969 Score: 2125
Period size: 514 Copynumber: 2.7 Consensus size: 514
46220583 ACAGATCAGA
* * * * * *
46220593 GAAATTACAAATCTTGTCTCCCTAAGCAGTAGCGGAACAGATCGAAGGCTGCAAATCTTATTTTC
1 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
* * *
46220658 AAGTGTAAGGAAGCAGATTTAAGCGACAAGTCCTATATCCCTGGTCAGCGGTAGAATAGGTTAGG
66 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTAGAATAGGTTGGG
* *
46220723 AAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGGCGGCAAATCTTATCTTGA
131 AAATTACAGATCTTGTCT-CCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCA
* *
46220788 AGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGAAATAGGTTGGGA
195 AGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGG-TCGGA
* * **
46220853 AATTACAGATCTTGTTTCCCTAAGCAATAGCGGAGCAGATCGAAGGTGGCAAATCTTATCTTCAA
259 AATTACAGATCTTGTATCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAA
* * * **
46220918 GTGTAAGGAAGCAGATTTAAGCTACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAA
324 GAGTAAGGAAGCAGATTTAAGCCACAAGTCCTACATCCCTGGTCAGCAGTGGAATAGGTTCAGAA
*
46220983 ATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAG
389 ATTACAGATCTTGTATCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAG
* * *
46221048 AATAAGGAAGCAGATTTAAGCCACAAGTCCTATTTCTCTGGTCAGCAGTGGAATAGGTTGG
454 AATAAAGAAGCAGATTTAAGCCACAAGTCCTATATCACTGGTCAGCAGTGGAATAGGTTGG
* *
46221109 GAAATTACAGATCTTGTCTCTCTAAGCAATAGCGGAGCAGATCGAATACGGCAAATCTTATCTTC
1 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
* * * *
46221174 AAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATTTCTCC-GGTCAGCAGTGGAATAGGATGG
66 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATC-CCTGGTCAGCAGTAGAATAGGTTGG
46221238 GAAATTACAGATCTTGTCTCTCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
130 GAAATTACAGATCTTGTCTC-CTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
* ** * *
46221303 AAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTACCTCTCTGGTCAGCAGTGGAATAGGTCAGA
194 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTCGGA
46221368 AATTACAGATCTTGTATCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAA
259 AATTACAGATCTTGTATCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAA
* *
46221433 GAGTAAGGAAGCAGATTTAAGCCACAAGTCCTACCTCTCTGGTCAGCAGTGGAATAGG-TCAGAA
324 GAGTAAGGAAGCAGATTTAAGCCACAAGTCCTACATCCCTGGTCAGCAGTGGAATAGGTTCAGAA
* *
46221497 ATTACAGATCTTGTATCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAG
389 ATTACAGATCTTGTATCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAG
** *
46221562 TGTAAAGAAGCAGATTTAAGCCACAAGTCCTATATCACTGGTCAGTAGTGGAATAGGTTGG
454 AATAAAGAAGCAGATTTAAGCCACAAGTCCTATATCACTGGTCAGCAGTGGAATAGGTTGG
* *
46221623 GAAATTACAGATCTTGTCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTC
1 GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
*
46221688 AAGTGTAAGGAAGCAGATTTAAGCCACAACTCCTATATCCCTGGTCAGCAGTAGAATAGGTTGGG
66 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTAGAATAGGTTGGG
* *
46221753 AAATTAACCG-TCTTGTCTCCTTAAGCAATAGCGGAGCAGATCGAAGATGGCAAATCTTATCTTC
131 AAATT-ACAGATCTTGTCTCC-TAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
* * *
46221817 AAGTGTAAGGAATCAGATTTGAGCCACAAGTCCTATATCCCTGGTCAGC-GATGGAATAGGTTGG
194 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAG-TGGAATAGGTCGG
* * * **
46221881 AAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGAT-TAATGACAGTGAATCTTATCTTC
258 AAATTACAGATCTTGTATCCCTAAGCAGTAGCGGAGCAGATCGAA-GACGGCAAATCTTATCTTC
*
46221945 AAGAGTAAGGAAGCAGATTGAAGCC
322 AAGAGTAAGGAAGCAGATTTAAGCC
46221970 GATAATCCTA
Statistics
Matches: 785, Mismatches: 69, Indels: 16
0.90 0.08 0.02
Matches are distributed among these distances:
513 6 0.01
514 429 0.55
515 121 0.15
516 227 0.29
517 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (514 bp):
GAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTC
AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTAGAATAGGTTGGG
AAATTACAGATCTTGTCTCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAA
GTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTCGGAAA
TTACAGATCTTGTATCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGA
GTAAGGAAGCAGATTTAAGCCACAAGTCCTACATCCCTGGTCAGCAGTGGAATAGGTTCAGAAAT
TACAGATCTTGTATCCCTAAGCAATAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGAA
TAAAGAAGCAGATTTAAGCCACAAGTCCTATATCACTGGTCAGCAGTGGAATAGGTTGG
Found at i:46222084 original size:85 final size:85
Alignment explanation
Indices: 46221975--46222270 Score: 281
Period size: 85 Copynumber: 3.4 Consensus size: 85
46221965 AAGCCGATAA
**
46221975 TCCTATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCA
1 TCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCA
* *
46222040 GTAGAGTAGATCGCAGCAGG
66 GTAGAGTAGATCACAGCAAG
* * * * * * * * * *
46222060 TCGTATCCCCCTGAGGTTGCAGTGGGGTAGATCGAATATGTCA-A-ATCTTATCTCCCTGAGGTT
1 TCCTATCTCCCTGAAGTTGTAGTGGAGCAGAT-TAA-A-GTAATAGATCTTATCTCTCTGAAGTT
* * * * *
46222123 GCAGTGGAGCAGATTATAGCCGATAA
63 GCAGTAGAGTAGATCACAG-C-A-AG
* * *
46222149 TCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTGTA
1 TCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCA
* * *
46222214 ATAGAATAGATCACATCAAG
66 GTAGAGTAGATCACAGCAAG
* *
46222234 TCTTATCTTCCTGAAGTTGTAGTGGAGCAGATTAAAG
1 TCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAG
46222271 ATAGCAAATT
Statistics
Matches: 161, Mismatches: 42, Indels: 16
0.74 0.19 0.07
Matches are distributed among these distances:
85 60 0.37
86 36 0.22
87 6 0.04
88 34 0.21
89 25 0.16
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (85 bp):
TCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCA
GTAGAGTAGATCACAGCAAG
Found at i:46222200 original size:44 final size:44
Alignment explanation
Indices: 46222104--46222269 Score: 142
Period size: 44 Copynumber: 3.8 Consensus size: 44
46222094 AATATGTCAA
* * ****
46222104 ATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTATAGCCGATA-
1 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTA-AAATAATAG
* *
46222148 ATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAATAATAG
1 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAATAATAG
* * * ** * * *
46222192 ATCTTATCTCTCTGAAGTTGTAATAGAATAGA-TCACATCA-AG
1 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAATAATAG
*
46222234 -TCTTATCTTCCTGAAGTTGTAGTGGAGCAGATTAAA
1 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAA
46222270 GATAGCAAAT
Statistics
Matches: 94, Mismatches: 26, Indels: 6
0.75 0.21 0.05
Matches are distributed among these distances:
41 25 0.27
42 4 0.04
43 9 0.10
44 56 0.60
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAATAATAG
Found at i:46223032 original size:16 final size:16
Alignment explanation
Indices: 46223011--46223041 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46223001 GCTATTAATC
*
46223011 ATATATATAAGAATAT
1 ATATATATAAAAATAT
46223027 ATATATATAAAAATA
1 ATATATATAAAAATA
46223042 AAAAAGAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
ATATATATAAAAATAT
Found at i:46223435 original size:128 final size:129
Alignment explanation
Indices: 46223174--46223469 Score: 377
Period size: 128 Copynumber: 2.3 Consensus size: 129
46223164 CATTTGGAGT
46223174 GTAAGGAAGCAGATTTAAGCCACAACTCCTATATCCCTGGTCAGCAGTAGAATAGGTTGGGAAAT
1 GTAAGGAAGCAGATTTAAGCCACAACTCCTATATCCCTGGTCAGCAGTAGAATAGGTTGGGAAAT
* * ** *
46223239 TAACCGTCTTGTCTCCTTAAGCAATAGCGGAGCAGATCGAAGATGGCAAATCTTATCTTCAAGT
66 TAACAGTCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACAGCAAATCTTATCTTCAAGA
* * * *
46223303 GTAAGGAATCAGATTTGAGCCACAAGTCCTATATCCCTGGTCAGC-GATGGAATAGGTT-GGAAA
1 GTAAGGAAGCAGATTTAAGCCACAACTCCTATATCCCTGGTCAGCAG-TAGAATAGGTTGGGAAA
* * **
46223366 TT-ACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGAT-TAATGACAGTGAATCTTATCTTCAA
65 TTAACAG-TCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAA-GACAGCAAATCTTATCTTCAA
46223429 GA
128 GA
* * *
46223431 GTAAGGAAGCAGATTGAAGCCGATAA-TCCTATCTCCCTG
1 GTAAGGAAGCAGATTTAAGCC-ACAACTCCTATATCCCTG
46223470 AAGTTGTAGT
Statistics
Matches: 145, Mismatches: 18, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
127 5 0.03
128 85 0.59
129 55 0.38
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (129 bp):
GTAAGGAAGCAGATTTAAGCCACAACTCCTATATCCCTGGTCAGCAGTAGAATAGGTTGGGAAAT
TAACAGTCTTGTCTCCCTAAGCAATAGCGGAGCAGATCGAAGACAGCAAATCTTATCTTCAAGA
Found at i:46223682 original size:44 final size:44
Alignment explanation
Indices: 46223585--46223746 Score: 125
Period size: 44 Copynumber: 3.8 Consensus size: 44
46223575 GAATATGTCA
* * ** *
46223585 AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTATAGCCGAT
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTATAAACAAT
* * *
46223629 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTA-AAATAAT
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTATAAACAAT
* * * ** * * *
46223672 AGATCTTATCTCTCTGAAGTTGTAATAGAATAGATCA-CATC-A-
1 A-ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTATAAACAAT
* *
46223714 AGTCTTATCTTCCTGAAGTTGTAGTGGAGCAGA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGA
46223747 CTAAAGATAG
Statistics
Matches: 91, Mismatches: 26, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
41 25 0.27
42 1 0.01
43 5 0.05
44 60 0.66
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTATAAACAAT
Found at i:46224514 original size:16 final size:16
Alignment explanation
Indices: 46224493--46224523 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46224483 GCTATTAATC
*
46224493 ATATATATAAGAATAT
1 ATATATATAAAAATAT
46224509 ATATATATAAAAATA
1 ATATATATAAAAATA
46224524 AAAAAGAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
ATATATATAAAAATAT
Found at i:46224678 original size:5 final size:5
Alignment explanation
Indices: 46224670--46224703 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
46224660 TTTTTTTTAT
46224670 TTTTC TTTTC TTTTC TTTT- TTTTC TTTTC GTTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC -TTTT
46224704 GAAAAATGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.15
5 19 0.70
6 4 0.15
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:46224692 original size:9 final size:9
Alignment explanation
Indices: 46224654--46224697 Score: 54
Period size: 9 Copynumber: 4.8 Consensus size: 9
46224644 AGCATTTGGG
46224654 TTCTTGTTTT
1 TTCTT-TTTT
*
46224664 TT-TTATTT
1 TTCTTTTTT
46224672 TTCTTTTCTT
1 TTCTTTT-TT
46224682 TTCTTTTTT
1 TTCTTTTTT
46224691 TTCTTTT
1 TTCTTTT
46224698 CGTTTTGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
8 5 0.17
9 14 0.47
10 11 0.37
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.84
Consensus pattern (9 bp):
TTCTTTTTT
Found at i:46224692 original size:14 final size:14
Alignment explanation
Indices: 46224654--46224703 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
46224644 AGCATTTGGG
46224654 TTCTTGTTTTTT-TT
1 TTCTT-TTTTTTCTT
*
46224668 ATT-TTTCTTTTCTT
1 -TTCTTTTTTTTCTT
46224682 TTCTTTTTTTTCTT
1 TTCTTTTTTTTCTT
46224696 TTCGTTTT
1 TTC-TTTT
46224704 GAAAAATGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 7 0.23
14 17 0.57
15 6 0.20
ACGTcount: A:0.02, C:0.12, G:0.04, T:0.82
Consensus pattern (14 bp):
TTCTTTTTTTTCTT
Found at i:46225188 original size:3 final size:3
Alignment explanation
Indices: 46225182--46225224 Score: 77
Period size: 3 Copynumber: 14.0 Consensus size: 3
46225172 TATTAGCCTT
46225182 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
46225225 AATTATTCTT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:46228295 original size:17 final size:17
Alignment explanation
Indices: 46228256--46228295 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
46228246 AAAAGAGTCC
46228256 GTCAAACCCTAGAGTTT
1 GTCAAACCCTAGAGTTT
** *
46228273 ACCAAACCTTAGAGTTT
1 GTCAAACCCTAGAGTTT
46228290 GTCAAA
1 GTCAAA
46228296 TGGCGAATTC
Statistics
Matches: 18, Mismatches: 5, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.28
Consensus pattern (17 bp):
GTCAAACCCTAGAGTTT
Found at i:46233113 original size:16 final size:18
Alignment explanation
Indices: 46233086--46233119 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
46233076 AATAAATATC
46233086 TTAAATTAA-TTTCTCAA
1 TTAAATTAATTTTCTCAA
46233103 TTAAA-TAATTTTCTCAA
1 TTAAATTAATTTTCTCAA
46233120 CTCAATTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAAATTAATTTTCTCAA
Found at i:46240660 original size:39 final size:39
Alignment explanation
Indices: 46240617--46240694 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
46240607 AAACCCAAAA
46240617 CAAAACTCATTGCTTCTAAATTTTAATTATAACTTTTAT
1 CAAAACTCATTGCTTCTAAATTTTAATTATAACTTTTAT
46240656 CAAAACTCATTGCTTCTAAATTTTAATTATAACTTTTAT
1 CAAAACTCATTGCTTCTAAATTTTAATTATAACTTTTAT
46240695 TATACTTTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.36, C:0.15, G:0.03, T:0.46
Consensus pattern (39 bp):
CAAAACTCATTGCTTCTAAATTTTAATTATAACTTTTAT
Found at i:46240842 original size:51 final size:51
Alignment explanation
Indices: 46240761--46240863 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
46240751 TGTCTGTTTC
46240761 TCACAAATGCATTTATTATTTATTGTTGTTGTTAAAACTTCCAAGAATTCA
1 TCACAAATGCATTTATTATTTATTGTTGTTGTTAAAACTTCCAAGAATTCA
*
46240812 TCACGAATGCATTTATTATTTATTGTTGTTGTTAAAACTTCCAAGAATTCA
1 TCACAAATGCATTTATTATTTATTGTTGTTGTTAAAACTTCCAAGAATTCA
46240863 T
1 T
46240864 ATGTTCATCT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.44
Consensus pattern (51 bp):
TCACAAATGCATTTATTATTTATTGTTGTTGTTAAAACTTCCAAGAATTCA
Found at i:46242427 original size:28 final size:32
Alignment explanation
Indices: 46242396--46242462 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
46242386 GTCTCTATGT
46242396 CTTTTA-TATA-TTT-GGAATTTAAT-TTCTA
1 CTTTTATTATATTTTAGGAATTTAATCTTCTA
*
46242424 CTTTTATTTTTATTTTAGGAATTTAATCCTTCTA
1 CTTTTA-TTATATTTTAGGAATTTAAT-CTTCTA
46242458 CTTTT
1 CTTTT
46242463 TGGATTTAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
28 6 0.19
30 3 0.09
31 3 0.09
32 10 0.31
34 10 0.31
ACGTcount: A:0.24, C:0.10, G:0.06, T:0.60
Consensus pattern (32 bp):
CTTTTATTATATTTTAGGAATTTAATCTTCTA
Found at i:46242575 original size:63 final size:63
Alignment explanation
Indices: 46242499--46242623 Score: 241
Period size: 63 Copynumber: 2.0 Consensus size: 63
46242489 TGCCGCCGTT
46242499 AAAATTCTTCTATTAAATTCACCTGTATAACATTTTGAAATTATAATATATATCAATTTGGTC
1 AAAATTCTTCTATTAAATTCACCTGTATAACATTTTGAAATTATAATATATATCAATTTGGTC
*
46242562 AAAATTCTTCTATTAAATTCACCTGTATAACATTTTGAAATTATAATATATATTAATTTGGT
1 AAAATTCTTCTATTAAATTCACCTGTATAACATTTTGAAATTATAATATATATCAATTTGGT
46242624 GTTTCAAAAA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.44
Consensus pattern (63 bp):
AAAATTCTTCTATTAAATTCACCTGTATAACATTTTGAAATTATAATATATATCAATTTGGTC
Found at i:46254444 original size:16 final size:17
Alignment explanation
Indices: 46254403--46254444 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
46254393 AAGATAATGT
46254403 AAATAAACATATAATTC
1 AAATAAACATATAATTC
*
46254420 TAGAATAAACATATAGTTC
1 -A-AATAAACATATAATTC
46254439 -AATAAA
1 AAATAAA
46254445 TTACAAAGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.29
Consensus pattern (17 bp):
AAATAAACATATAATTC
Found at i:46259582 original size:20 final size:20
Alignment explanation
Indices: 46259554--46259592 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
46259544 CCCTTCTGTC
*
46259554 TTTTATTATATTTTCAATTA
1 TTTTATTATATTTTAAATTA
* *
46259574 TTTTTTTATCTTTTAAATT
1 TTTTATTATATTTTAAATT
46259593 TGCCCTTTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTATTATATTTTAAATTA
Found at i:46260010 original size:19 final size:20
Alignment explanation
Indices: 46259971--46260010 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
46259961 TTCTAGGCCT
* *
46259971 TTGTAATATTTATTATTGCA
1 TTGTAATATTTAATATAGCA
46259991 TTGT-ATATTTAATATAGCA
1 TTGTAATATTTAATATAGCA
46260010 T
1 T
46260011 CACATCATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.53
Consensus pattern (20 bp):
TTGTAATATTTAATATAGCA
Found at i:46260372 original size:98 final size:98
Alignment explanation
Indices: 46260251--46260447 Score: 367
Period size: 98 Copynumber: 2.0 Consensus size: 98
46260241 TTAAAAATAA
*
46260251 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
46260316 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
*
46260349 TAAAGGAAATATTCCGAGTTTGGGATTTTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
46260414 TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
46260447 T
1 T
46260448 TTTATTGCAC
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
Found at i:46265688 original size:132 final size:132
Alignment explanation
Indices: 46265515--46266218 Score: 1097
Period size: 132 Copynumber: 5.3 Consensus size: 132
46265505 ACAGCGAAGT
* * *
46265515 AGATCGAAGATGGCGGATTATACCTCCCTGTGGTTACAGTGGAGTATATTGAAACCAGTAATTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* * * *
46265580 ACTTCCCCGAACAACGGTGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
66 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
46265645 GC
131 GC
* * * *
46265647 AGATCGAAAATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAACTAGTAATTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
*
46265712 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGTAGTAGTGGA
66 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
46265777 GC
131 GC
* *
46265779 AGATCGAAGATGGCGGATTTTACCTCCCTATGGTTATAGTGGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
*
46265844 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGGTCTTATCTCCCTAAGCAGTAGTGGA
66 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
46265909 GC
131 GC
* *
46265911 AGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAACTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* * * *
46265976 ACTTCTCTGGACAACAGCGGGATAGATTGAAGATTTCAGGTCTTATCTCCCTAAGCAGTAGTGGA
66 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
46266041 GC
131 GC
*
46266043 AGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* *
46266108 ACTTCCCTAGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT-GA
66 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
46266172 GGC
131 -GC
* ** * * **
46266175 AG-GCTGAAGATGGCAAATCTTATCTCCCTGAAGTTACAGTGGAG
1 AGATC-GAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAG
46266219 CAGATTAAAG
Statistics
Matches: 534, Mismatches: 36, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
131 3 0.01
132 531 0.99
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
GC
Found at i:46265938 original size:44 final size:45
Alignment explanation
Indices: 46265596--46265939 Score: 132
Period size: 44 Copynumber: 7.8 Consensus size: 45
46265586 CCGAACAACG
* * ** * * *
46265596 GTGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAG-CAGTA
1 GTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAGGACAGTA
* * * * * **
46265640 GTGGAGCAGATCGAAAATGGCGGATTTTACCTCCCTGTGGTTA-TA
1 GTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AGGACAGTA
* * * * * **
46265685 GTGGAGTACATTGAA-ACTAGTA-ATTCTACTTCCCT-GGACAACA
1 GTGGAGTAGATTGAAGA-TGGCAGATTTTACCTCCCTAGGACAGTA
* ** * * * *
46265728 GTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAG-TAGTA
1 GTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAGGACAGTA
* * * **
46265772 GTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTATGGTTA-TA
1 GTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTA-GGACAGTA
* *** * * * **
46265817 GTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-GGACAACA
1 GTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAGGACAGTA
* ** * * * *
46265860 GTGGAATAGATTGAAGATTTCAGGTCTTATCTCCCTAAG-CAGTA
1 GTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAGGACAGTA
* *
46265904 GTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCT
1 GTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT
46265940 GTGGTTACAG
Statistics
Matches: 206, Mismatches: 82, Indels: 24
0.66 0.26 0.08
Matches are distributed among these distances:
42 6 0.03
43 32 0.16
44 129 0.63
45 36 0.17
46 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (45 bp):
GTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAGGACAGTA
Found at i:46266294 original size:44 final size:44
Alignment explanation
Indices: 46266191--46266530 Score: 218
Period size: 44 Copynumber: 7.8 Consensus size: 44
46266181 AAGATGGCAA
* ** *
46266191 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCAACA-
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATC-TCAG
* * *
46266235 ATCCTATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAATCTCAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCTCAG
* * ** * *
46266279 ATCTTACCTCTCTGAAGTTGCA-AAGAGCAGA-TCACATCT-AG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCTCAG
* * * *
46266320 -TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAAGC-AAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AATCTCAG
* * ** *
46266364 -TCTTATC-CTCCTGAAGTTGCAGT-GAGGGAGACTAAAAATGGCAA
1 ATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAAAATCTCAG
* * * * *
46266408 ATCTTATTTCCCTGAAGTTGCAGTGGAGCAAATT-AAAGCTGATA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCTCA-G
* *
46266452 ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CCCTAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCTC-AG
* * * * *
46266496 ATTTTATGTCTCTGAAGTTTCAG-AGAGCAGATTAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA
46266531 TGAAGCAAGT
Statistics
Matches: 228, Mismatches: 52, Indels: 33
0.73 0.17 0.11
Matches are distributed among these distances:
40 18 0.08
41 9 0.04
42 8 0.04
43 28 0.12
44 133 0.58
45 29 0.13
46 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCTCAG
Found at i:46266309 original size:396 final size:396
Alignment explanation
Indices: 46265515--46266311 Score: 1039
Period size: 396 Copynumber: 2.0 Consensus size: 396
46265505 ACAGCGAAGT
* * *
46265515 AGATCGAAGATGGCGGATTATACCTCCCTGTGGTTACAGTGGAGTATATTGAAACCAGTAATTCT
1 AGATCGAAGATGGCAGATTATACCTCCCTGTGGTTACAGTGGAGTACATTGAAACCAGTAACTCT
* *
46265580 ACTTCCCCGAACAACGGTGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
66 ACTTCCCCGAACAACAGCGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
* * *
46265645 GCAGATCGAAAATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAACTAGTAATT
131 GCAGATCGAAAATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAACCAGTAATT
* *
46265710 CTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGTAGTAGTG
196 CTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTG
** * * * * * **
46265775 GAGCAGATCGAAGATGGCGGATTTTACCTCCCTATGGTTATAGTGGAGTACATTGAAGCCAGTAA
261 GAGCAGATCGAAGATGGCAAATCTTACCTCCCTATAGTTACAGTGGAGCACATTAAAGCCAACAA
* * * * * * * *
46265840 TTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGGTCTTATCTCCCTAAGCAGTAG
326 TCCTACTTCCCTGAACAACAGTGGAACAGATTGAAAATCTCAGATCTTACCTCCCTAAGCAGCAG
**
46265905 TGGAGC
391 AAGAGC
* *
46265911 AGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAACTCT
1 AGATCGAAGATGGCAGATTATACCTCCCTGTGGTTACAGTGGAGTACATTGAAACCAGTAACTCT
* * * * * *
46265976 ACTTCTCTGGACAACAGCGGGATAGATTGAAGATTTCAGGTCTTATCTCCCTAAGCAGTAGTGGA
66 ACTTCCCCGAACAACAGCGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
* *
46266041 GCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATT
131 GCAGATCGAAAATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAACCAGTAATT
*
46266106 CTACTTCCCTAGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT-
196 CTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTG
* * *
46266170 GAGGCAG-GCTGAAGATGGCAAATCTTATCTCCCTGA-AGTTACAGTGGAGCAGATTAAAGCCAA
261 GA-GCAGATC-GAAGATGGCAAATCTTACCTCCCT-ATAGTTACAGTGGAGCACATTAAAGCCAA
*** * * *
46266233 CAATCCTATCTT-CCTGAAGTTGCAGTGGAGCGGATT-AAAATCTCAGATCTTACCTCTCTGAAG
323 CAATCCTA-CTTCCCTGAA-CAACAGTGGAACAGATTGAAAATCTCAGATCTTACCTCCCT-AAG
**
46266296 TTGCA-AAGAGC
385 CAGCAGAAGAGC
46266307 AGATC
1 AGATC
46266312 ACATCTAGTC
Statistics
Matches: 344, Mismatches: 51, Indels: 12
0.85 0.13 0.03
Matches are distributed among these distances:
395 3 0.01
396 321 0.93
397 20 0.06
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (396 bp):
AGATCGAAGATGGCAGATTATACCTCCCTGTGGTTACAGTGGAGTACATTGAAACCAGTAACTCT
ACTTCCCCGAACAACAGCGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGA
GCAGATCGAAAATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAACCAGTAATT
CTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTG
GAGCAGATCGAAGATGGCAAATCTTACCTCCCTATAGTTACAGTGGAGCACATTAAAGCCAACAA
TCCTACTTCCCTGAACAACAGTGGAACAGATTGAAAATCTCAGATCTTACCTCCCTAAGCAGCAG
AAGAGC
Found at i:46267935 original size:20 final size:20
Alignment explanation
Indices: 46267912--46267956 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
46267902 ATGTACGTAT
* *
46267912 ATATATTATACTTTCTATAC
1 ATATATTATAATTTATATAC
* *
46267932 ATATTTTATAATTTATATAT
1 ATATATTATAATTTATATAC
46267952 ATATA
1 ATATA
46267957 CACATATATG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (20 bp):
ATATATTATAATTTATATAC
Found at i:46268732 original size:97 final size:98
Alignment explanation
Indices: 46268593--46268788 Score: 331
Period size: 97 Copynumber: 2.0 Consensus size: 98
46268583 TTAAAAATAA
* *
46268593 TAAATGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGG-GTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
46268657 TTAAATCATGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCATGGATAAGTGGATATTCTTTTAAAG
* *
46268690 TAAAGGAAATATTCCGAGTTTGGGATTTTAGAGGGATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
46268755 TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
66 TTAAATCATGGATAAGTGGATATTCTTTTAAAG
46268788 T
1 T
46268789 TTTATTGCAC
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
97 52 0.57
98 40 0.43
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCATGGATAAGTGGATATTCTTTTAAAG
Found at i:46268809 original size:97 final size:95
Alignment explanation
Indices: 46268609--46268788 Score: 270
Period size: 98 Copynumber: 1.9 Consensus size: 95
46268599 AAATATTCCG
*
46268609 AGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGGTGATTTCTTAAATCATGGATAAGT
1 AGTTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGGTGATTTCTTAAATCATGGATAAGT
* * *
46268674 GGATGTTCTTTTAAAGTAAAGGAAATATTCC
66 GGATATTCTTTTAAAGTAAAGCAAATAGT-C
* * *
46268705 GAGTTTGGGATTTTAGAGGGATCGTGCCCTAACGTATTGGGTGTGATTTCTTAAATCTTGGATAA
1 -AGTTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGG-GTGATTTCTTAAATCATGGATAA
46268770 GTGGATATTCTTTTAAAGT
64 GTGGATATTCTTTTAAAGT
46268789 TTTATTGCAC
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
97 37 0.48
98 40 0.52
ACGTcount: A:0.27, C:0.09, G:0.26, T:0.38
Consensus pattern (95 bp):
AGTTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGGTGATTTCTTAAATCATGGATAAGT
GGATATTCTTTTAAAGTAAAGCAAATAGTC
Found at i:46284891 original size:21 final size:20
Alignment explanation
Indices: 46284853--46284893 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
46284843 ATAAACAACC
* *
46284853 TAAAAATTTTAAAAAATGAA
1 TAAAAAATTAAAAAAATGAA
46284873 TAAAAAATTAAAAATAATGAA
1 TAAAAAATTAAAAA-AATGAA
46284894 AATATTGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (20 bp):
TAAAAAATTAAAAAAATGAA
Found at i:46289244 original size:9 final size:9
Alignment explanation
Indices: 46289230--46289255 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
46289220 ATTGGACACT
46289230 TATCCATCA
1 TATCCATCA
46289239 TATCCATCA
1 TATCCATCA
46289248 TATCCATC
1 TATCCATC
46289256 GGGAGCTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (9 bp):
TATCCATCA
Found at i:46295019 original size:18 final size:19
Alignment explanation
Indices: 46294990--46295028 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
46294980 AAAATATCAT
46294990 ATTAATTTTAATTGACTTG
1 ATTAATTTTAATTGACTTG
*
46295009 ATTAA-TTTAATTTACTTG
1 ATTAATTTTAATTGACTTG
46295027 AT
1 AT
46295029 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (19 bp):
ATTAATTTTAATTGACTTG
Found at i:46295039 original size:19 final size:18
Alignment explanation
Indices: 46294997--46295040 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
46294987 CATATTAATT
* * *
46294997 TTAATTGACTTGATTAAT
1 TTAATTTACTTGATAAAA
46295015 TTAATTTACTTGATCAAAA
1 TTAATTTACTTGAT-AAAA
46295034 TTAATTT
1 TTAATTT
46295041 TTCCAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (18 bp):
TTAATTTACTTGATAAAA
Found at i:46296624 original size:41 final size:41
Alignment explanation
Indices: 46296536--46296613 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
46296526 CTACTAGGCT
* * * *
46296536 CAAAGCGTGATATAACACACTGGCACGAAGCCTGCTAAGCA
1 CAAAGCTTAATATAACACACCGACACGAAGCCTGCTAAGCA
* *
46296577 CAAAGCTTAATATAATACACCGACACGAAGTCTGCTA
1 CAAAGCTTAATATAACACACCGACACGAAGCCTGCTA
46296614 GGCATGAAGC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.18
Consensus pattern (41 bp):
CAAAGCTTAATATAACACACCGACACGAAGCCTGCTAAGCA
Found at i:46296650 original size:38 final size:38
Alignment explanation
Indices: 46296590--46296711 Score: 158
Period size: 38 Copynumber: 3.2 Consensus size: 38
46296580 AGCTTAATAT
* * * *
46296590 AATA-CACCGACACGAAGTCTGCTAGGCATGAAGCTCG
1 AATATCACCGGCACAAAGCCTGCTAGGCATGAAGCCCG
* *
46296627 AATATCACCGGCACAAAGCCTGCTAGGCACGGAGCCCG
1 AATATCACCGGCACAAAGCCTGCTAGGCATGAAGCCCG
*
46296665 AATATCACCGGCACAAAGCCTGCTAGGCAT-AGAGCCCA
1 AATATCACCGGCACAAAGCCTGCTAGGCATGA-AGCCCG
46296703 AATATCACC
1 AATATCACC
46296712 ACGTTTCTAT
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
37 4 0.05
38 70 0.95
ACGTcount: A:0.33, C:0.31, G:0.22, T:0.14
Consensus pattern (38 bp):
AATATCACCGGCACAAAGCCTGCTAGGCATGAAGCCCG
Found at i:46304460 original size:27 final size:27
Alignment explanation
Indices: 46304429--46304606 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
46304419 TAAATTGTAC
46304429 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
46304456 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
46304482 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
46304510 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
46304538 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
46304565 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
46304592 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46304607 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:46304543 original size:82 final size:81
Alignment explanation
Indices: 46304430--46304585 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
46304420 AAATTGTACA
* *
46304430 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
46304494 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
46304511 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
46304576 TGCGAGTTGA
65 TGCGAATTGA
46304586 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:46304597 original size:82 final size:81
Alignment explanation
Indices: 46304426--46304606 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
46304416 GATTAAATTG
* *
46304426 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
46304491 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
46304507 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
46304571 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
46304589 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
46304607 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:46320546 original size:13 final size:13
Alignment explanation
Indices: 46320528--46320556 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
46320518 TCAAAGTAAA
46320528 CAATATATACTAG
1 CAATATATACTAG
46320541 CAATATATACTAG
1 CAATATATACTAG
46320554 CAA
1 CAA
46320557 ATCATTAGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.17, G:0.07, T:0.28
Consensus pattern (13 bp):
CAATATATACTAG
Found at i:46321105 original size:13 final size:13
Alignment explanation
Indices: 46321087--46321115 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
46321077 TCAAAGTAAA
46321087 CAATATATACTAG
1 CAATATATACTAG
46321100 CAATATATACTAG
1 CAATATATACTAG
46321113 CAA
1 CAA
46321116 ATCATTAGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.17, G:0.07, T:0.28
Consensus pattern (13 bp):
CAATATATACTAG
Found at i:46321474 original size:559 final size:559
Alignment explanation
Indices: 46320417--46321535 Score: 2229
Period size: 559 Copynumber: 2.0 Consensus size: 559
46320407 TAGCATTTAA
46320417 TGACTCTAATTGCATAGCATAAAGTCTAGGACTAGATTTCAAAGAAACTAAGCAACTCAAAAACA
1 TGACTCTAATTGCATAGCATAAAGTCTAGGACTAGATTTCAAAGAAACTAAGCAACTCAAAAACA
46320482 AACAGTGAGTCACGTCATGACCACATGATTTGACCCTCAAAGTAAACAATATATACTAGCAATAT
66 AACAGTGAGTCACGTCATGACCACATGATTTGACCCTCAAAGTAAACAATATATACTAGCAATAT
46320547 ATACTAGCAAATCATTAGGCTCAACTTACCAAATTAACATATCATGCTTTTCTAAAGAACCTACA
131 ATACTAGCAAATCATTAGGCTCAACTTACCAAATTAACATATCATGCTTTTCTAAAGAACCTACA
46320612 TGCACAAAATGAACTATTTGGTCAATTGAAACATGCTAAAAACTGTGGTATATTGTGTTGTCCAT
196 TGCACAAAATGAACTATTTGGTCAATTGAAACATGCTAAAAACTGTGGTATATTGTGTTGTCCAT
46320677 TAAATCACATTTCAATCACTTCTCAAACAATTTTTAACATAAATATATCAAGCAAGCATAATATG
261 TAAATCACATTTCAATCACTTCTCAAACAATTTTTAACATAAATATATCAAGCAAGCATAATATG
46320742 CATCACCAACAATATTCACAACCATCCAAATAAAACTACAAATCAAGGTCCAAAGTCTTTTAATA
326 CATCACCAACAATATTCACAACCATCCAAATAAAACTACAAATCAAGGTCCAAAGTCTTTTAATA
46320807 GTTTGTAAGAAAGTTTAGTCCCAAATAGGATCCCACATTGCCTTTGTCCATAATTTGAAACCAAA
391 GTTTGTAAGAAAGTTTAGTCCCAAATAGGATCCCACATTGCCTTTGTCCATAATTTGAAACCAAA
46320872 AACACCTACTCAAGAGTTATGCCTTGGATGAATCACTACCCTTGCCTACTCCTCACTCCTTGGAT
456 AACACCTACTCAAGAGTTATGCCTTGGATGAATCACTACCCTTGCCTACTCCTCACTCCTTGGAT
*
46320937 GCGTTACTAACCTGCAAGTTTTGGGGAAAGAGTGTGAGC
521 GCGTTACTAACCTGCAAGTTTTGGGGAAAGAGGGTGAGC
46320976 TGACTCTAATTGCATAGCATAAAGTCTAGGACTAGATTTCAAAGAAACTAAGCAACTCAAAAACA
1 TGACTCTAATTGCATAGCATAAAGTCTAGGACTAGATTTCAAAGAAACTAAGCAACTCAAAAACA
46321041 AACAGTGAGTCACGTCATGACCACATGATTTGACCCTCAAAGTAAACAATATATACTAGCAATAT
66 AACAGTGAGTCACGTCATGACCACATGATTTGACCCTCAAAGTAAACAATATATACTAGCAATAT
46321106 ATACTAGCAAATCATTAGGCTCAACTTACCAAATTAACATATCATGCTTTTCTAAAGAACCTACA
131 ATACTAGCAAATCATTAGGCTCAACTTACCAAATTAACATATCATGCTTTTCTAAAGAACCTACA
46321171 TGCACAAAATGAACTATTTGGTCAATTGAAACATGCTAAAAACTGTGGTATATTGTGTTGTCCAT
196 TGCACAAAATGAACTATTTGGTCAATTGAAACATGCTAAAAACTGTGGTATATTGTGTTGTCCAT
46321236 TAAATCACATTTCAATCACTTCTCAAACAATTTTTAACATAAATATATCAAGCAAGCATAATATG
261 TAAATCACATTTCAATCACTTCTCAAACAATTTTTAACATAAATATATCAAGCAAGCATAATATG
46321301 CATCACCAACAATATTCACAACCATCCAAATAAAACTACAAATCAAGGTCCAAAGTCTTTTAATA
326 CATCACCAACAATATTCACAACCATCCAAATAAAACTACAAATCAAGGTCCAAAGTCTTTTAATA
46321366 GTTTGTAAGAAAGTTTAGTCCCAAATAGGATCCCACATTGCCTTTGTCCATAATTTGAAACCAAA
391 GTTTGTAAGAAAGTTTAGTCCCAAATAGGATCCCACATTGCCTTTGTCCATAATTTGAAACCAAA
46321431 AACACCTACTCAAGAGTTATGCCTTGGATGAATCACTACCCTTGCCTACTCCTCACTCCTTGGAT
456 AACACCTACTCAAGAGTTATGCCTTGGATGAATCACTACCCTTGCCTACTCCTCACTCCTTGGAT
46321496 GCGTTACTAACCTGCAAGTTTTGGGGAAAGAGGGTGAGC
521 GCGTTACTAACCTGCAAGTTTTGGGGAAAGAGGGTGAGC
46321535 T
1 T
46321536 TTTGCAACCT
Statistics
Matches: 559, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
559 559 1.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (559 bp):
TGACTCTAATTGCATAGCATAAAGTCTAGGACTAGATTTCAAAGAAACTAAGCAACTCAAAAACA
AACAGTGAGTCACGTCATGACCACATGATTTGACCCTCAAAGTAAACAATATATACTAGCAATAT
ATACTAGCAAATCATTAGGCTCAACTTACCAAATTAACATATCATGCTTTTCTAAAGAACCTACA
TGCACAAAATGAACTATTTGGTCAATTGAAACATGCTAAAAACTGTGGTATATTGTGTTGTCCAT
TAAATCACATTTCAATCACTTCTCAAACAATTTTTAACATAAATATATCAAGCAAGCATAATATG
CATCACCAACAATATTCACAACCATCCAAATAAAACTACAAATCAAGGTCCAAAGTCTTTTAATA
GTTTGTAAGAAAGTTTAGTCCCAAATAGGATCCCACATTGCCTTTGTCCATAATTTGAAACCAAA
AACACCTACTCAAGAGTTATGCCTTGGATGAATCACTACCCTTGCCTACTCCTCACTCCTTGGAT
GCGTTACTAACCTGCAAGTTTTGGGGAAAGAGGGTGAGC
Found at i:46327083 original size:12 final size:12
Alignment explanation
Indices: 46327066--46327108 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
46327056 TGAATCACTC
46327066 AAAAATTAATAA
1 AAAAATTAATAA
*
46327078 AAAAATT-A-AC
1 AAAAATTAATAA
46327088 AAAAATTAATAA
1 AAAAATTAATAA
46327100 AAAAATTAA
1 AAAAATTAA
46327109 CATCTGTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 8 0.30
11 2 0.07
12 17 0.63
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAATTAATAA
Found at i:46327093 original size:22 final size:22
Alignment explanation
Indices: 46327065--46327110 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
46327055 TTGAATCACT
46327065 CAAAAATTAATAAAAAAATTAA
1 CAAAAATTAATAAAAAAATTAA
46327087 CAAAAATTAATAAAAAAATTAA
1 CAAAAATTAATAAAAAAATTAA
46327109 CA
1 CA
46327111 TCTGTTTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.22
Consensus pattern (22 bp):
CAAAAATTAATAAAAAAATTAA
Found at i:46327844 original size:101 final size:100
Alignment explanation
Indices: 46327662--46327855 Score: 237
Period size: 101 Copynumber: 1.9 Consensus size: 100
46327652 GTTGGAACTG
* * * *
46327662 CTAGTTAAAAAATTGTGTAGATAAAATATAATAGGATGTTAATAGTTTAGTTAAAATTGTATTAA
1 CTAGTTAAAAAATTGTGTAGATAAAATAAAATAGGATGTTAATAGTTCAGTTAAAATCGAATTAA
* *
46327727 TTGAGAGAATCAATCTAATTTGATTAATGGAGCTC
66 CTGACAGAATCAATCTAATTTGATTAATGGAGCTC
* * * * *
46327762 CTAGTTAAAAAATTGTGTAGTTAGAATAAAATAAGGGTGTTCATAGTTCGGTTAAAATCGAATTA
1 CTAGTTAAAAAATTGTGTAGATAAAATAAAAT-AGGATGTTAATAGTTCAGTTAAAATCGAATTA
** *
46327827 ACTGACCA-AATTGATCTAATTTGGTTAAT
65 ACTGA-CAGAATCAATCTAATTTGATTAAT
46327856 CAATCAGTGA
Statistics
Matches: 78, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
100 29 0.37
101 48 0.62
102 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.18, T:0.36
Consensus pattern (100 bp):
CTAGTTAAAAAATTGTGTAGATAAAATAAAATAGGATGTTAATAGTTCAGTTAAAATCGAATTAA
CTGACAGAATCAATCTAATTTGATTAATGGAGCTC
Found at i:46329470 original size:32 final size:32
Alignment explanation
Indices: 46329434--46329496 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
46329424 ATTTCTCATG
*
46329434 CTTGATTAAAGTAAAAAATAAA-TAAATAAAAA
1 CTTGATTAAAGGAAAAAA-AAATTAAATAAAAA
* *
46329466 CTTGATTGAAGGAAAAAAAAATTAACTAAAA
1 CTTGATTAAAGGAAAAAAAAATTAAATAAAA
46329497 GTTTTGATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 3 0.11
32 24 0.89
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24
Consensus pattern (32 bp):
CTTGATTAAAGGAAAAAAAAATTAAATAAAAA
Found at i:46331010 original size:32 final size:32
Alignment explanation
Indices: 46330974--46331036 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
46330964 ATTTCTCATG
*
46330974 CTTGATTAAAGTAAAAAATAAA-TAAATAAAAA
1 CTTGATTAAAGGAAAAAA-AAATTAAATAAAAA
* *
46331006 CTTGATTGAAGGAAAAAAAAATTAACTAAAA
1 CTTGATTAAAGGAAAAAAAAATTAAATAAAA
46331037 GTTTTGATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 3 0.11
32 24 0.89
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24
Consensus pattern (32 bp):
CTTGATTAAAGGAAAAAAAAATTAAATAAAAA
Found at i:46334281 original size:31 final size:31
Alignment explanation
Indices: 46334238--46334296 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
46334228 AAATGATTAA
46334238 TAAACTATTCGAAAATTTTTATTTAAATGAT
1 TAAACTATTCGAAAATTTTTATTTAAATGAT
* *
46334269 TAAATTATTCGAAAGTTTTTATTTAAAT
1 TAAACTATTCGAAAATTTTTATTTAAAT
46334297 TATTGAGCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.47
Consensus pattern (31 bp):
TAAACTATTCGAAAATTTTTATTTAAATGAT
Found at i:46341864 original size:124 final size:125
Alignment explanation
Indices: 46341474--46341885 Score: 655
Period size: 125 Copynumber: 3.3 Consensus size: 125
46341464 ATTTATTAAG
**
46341474 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAC
* * * * *
46341539 ATTTCTGAGAAAATAATATAAAAAATGCTTTAAGCAGGATGCTTTATCAAAAGAATTTCT
66 GTTTCTGAGCAAATAGTATAAAAAATGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
* * * *
46341599 GAAATCGCTCACATGTGGACGCGCTTTTGCTATAATAGGTCCTGAAAAAATAATTTCAAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAC
* * *
46341664 GTTTCTGAGCAAATAGTATAAAAAACGCTTGAAGCAGGATGCTTTATTAGAAGAATTTCT
66 GTTTCTGAGCAAATAGTATAAAAAATGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
* *
46341724 GAAATCGCTCCCACGTGGACACGCTTTTGCTATAGTAGGTCCTGAAAAAATAATTTCAAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAC
46341789 GTTTCTGAGCAAATAGTAT-AAAAATGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
66 GTTTCTGAGCAAATAGTATAAAAAATGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
* *
46341848 AAAATCGCTCCCACGTGGACGCGTTTTTGCTACAGTAG
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAG
46341886 CATGTTTGGG
Statistics
Matches: 263, Mismatches: 24, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
124 71 0.27
125 192 0.73
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (125 bp):
GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAC
GTTTCTGAGCAAATAGTATAAAAAATGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
Found at i:46345148 original size:49 final size:49
Alignment explanation
Indices: 46345091--46345456 Score: 651
Period size: 49 Copynumber: 7.5 Consensus size: 49
46345081 TAAGAATATT
* *
46345091 AACTATTTTGTATTTTATTAAATGAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
46345140 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
46345189 AACTATTTTGTATTTTATTACATCAAATAATATCAAATTATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
46345238 AACTATTTTGTATTTTATTACATCAAATAATATCAAATTATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
46345287 AACTATTTTGTATTTTATTACATTAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
* *
46345336 AACTATTTTGTATTTTATTATATCAAATAATATCAAAATATTCAAAATT
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
* *
46345385 AACTATTTTGTATTTTATTACATGAAATAATATCAAATTATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
46345434 AACTATTTTGTATTTTATTACAT
1 AACTATTTTGTATTTTATTACAT
46345457 TAATATAAAC
Statistics
Matches: 305, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 305 1.00
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.43
Consensus pattern (49 bp):
AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
Found at i:46345217 original size:29 final size:29
Alignment explanation
Indices: 46345184--46345267 Score: 78
Period size: 29 Copynumber: 3.2 Consensus size: 29
46345174 AAAATATTCA
46345184 AAATAAACTATTTTGTATTTTATTACATC
1 AAATAAACTATTTTGTATTTTATTACATC
* **
46345213 AAAT-AA-TA---T-CAAATTATT-CA--
1 AAATAAACTATTTTGTATTTTATTACATC
46345233 AAATAAACTATTTTGTATTTTATTACATC
1 AAATAAACTATTTTGTATTTTATTACATC
46345262 AAATAA
1 AAATAA
46345268 TATCAAATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 18
0.62 0.09 0.28
Matches are distributed among these distances:
20 4 0.10
21 2 0.05
22 4 0.10
23 6 0.15
24 1 0.03
25 1 0.03
26 6 0.15
27 4 0.10
28 2 0.05
29 10 0.25
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43
Consensus pattern (29 bp):
AAATAAACTATTTTGTATTTTATTACATC
Found at i:46347779 original size:22 final size:22
Alignment explanation
Indices: 46347737--46347785 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
46347727 TCTTTTAAAT
* *
46347737 AGAAATTTGAGAGGAATTTGAG
1 AGAAATTAGAGAGGAAATTGAG
46347759 AGAATATTAGAGA-GAAATTGAG
1 AGAA-ATTAGAGAGGAAATTGAG
46347781 AGAAA
1 AGAAA
46347786 GGATTTAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 16 0.67
23 7 0.29
ACGTcount: A:0.49, C:0.00, G:0.29, T:0.22
Consensus pattern (22 bp):
AGAAATTAGAGAGGAAATTGAG
Found at i:46347781 original size:10 final size:10
Alignment explanation
Indices: 46347737--46347785 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 10
46347727 TCTTTTAAAT
46347737 AGAAATTTGAG
1 AGAAA-TTGAG
*
46347748 AGGAATTTGAG
1 A-GAAATTGAG
46347759 AGAATATTAGAG
1 AGAA-ATT-GAG
46347771 AGAAATTGAG
1 AGAAATTGAG
46347781 AGAAA
1 AGAAA
46347786 GGATTTAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
10 11 0.33
11 12 0.36
12 10 0.30
ACGTcount: A:0.49, C:0.00, G:0.29, T:0.22
Consensus pattern (10 bp):
AGAAATTGAG
Found at i:46364232 original size:68 final size:69
Alignment explanation
Indices: 46364148--46364276 Score: 206
Period size: 69 Copynumber: 1.9 Consensus size: 69
46364138 AGTTTTAATC
* * *
46364148 TTAAATTTAATTTAATACTTATCTTAAT-AGTATTTTATTAATTTAATATTAAATTGATTATCTT
1 TTAAATTCAATTTAATACTTATCTTAATAAGTATTATATTAATTTAATATTAAAGTGATTATCTT
46364212 AACA
66 AACA
* *
46364216 TTAAATTCAATTTAATATTTATCTTGATAAGTATTATATTAATTTAATATTAAAGTGATTA
1 TTAAATTCAATTTAATACTTATCTTAATAAGTATTATATTAATTTAATATTAAAGTGATTA
46364277 AGTTTAATCA
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
68 25 0.45
69 30 0.55
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (69 bp):
TTAAATTCAATTTAATACTTATCTTAATAAGTATTATATTAATTTAATATTAAAGTGATTATCTT
AACA
Found at i:46364279 original size:32 final size:32
Alignment explanation
Indices: 46364176--46364279 Score: 84
Period size: 32 Copynumber: 3.1 Consensus size: 32
46364166 TTATCTTAAT
*
46364176 AGTATTTTATTAATTTAATATTAAATTGATTA
1 AGTATTATATTAATTTAATATTAAATTGATTA
** * **
46364208 TCTTAACATTAAATTCAATTTAATATTTATCTTGA-TA
1 ----AGTATTATATT-AATTTAATA-TTAAATTGATTA
*
46364245 AGTATTATATTAATTTAATATTAAAGTGATTA
1 AGTATTATATTAATTTAATATTAAATTGATTA
46364277 AGT
1 AGT
46364280 TTAATCATAG
Statistics
Matches: 53, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
31 6 0.11
32 14 0.26
33 8 0.15
36 7 0.13
37 11 0.21
38 7 0.13
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.49
Consensus pattern (32 bp):
AGTATTATATTAATTTAATATTAAATTGATTA
Found at i:46375121 original size:42 final size:42
Alignment explanation
Indices: 46375051--46375142 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
46375041 TCGAAGTTGG
* *
46375051 GACACACGATCGTGTCCCAACCCATGTAACTCATTGACTTGA
1 GACACACGACCGTGTCCCAACCCATGTAACTCACTGACTTGA
* * * * * *
46375093 GACACACGACCGTGTCCTAGCTCGTGTAACTCGCTGACTTGG
1 GACACACGACCGTGTCCCAACCCATGTAACTCACTGACTTGA
*
46375135 GTCACACG
1 GACACACG
46375143 GCCATGTCGC
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.23
Consensus pattern (42 bp):
GACACACGACCGTGTCCCAACCCATGTAACTCACTGACTTGA
Found at i:46375986 original size:197 final size:196
Alignment explanation
Indices: 46375652--46376046 Score: 745
Period size: 197 Copynumber: 2.0 Consensus size: 196
46375642 ATCATAGTAC
*
46375652 TTGAAACCTAAAATAGCACCACATTAACAAAAAAAATTATCAACCAAGGACTTCCTAATTACATG
1 TTGAAACCTAAAATAGCACCACATTAACAAAAAAAATTATCAACCAAGGACTTCCTAAGTACATG
46375717 CAATTACAAAATGAAATATCACCACACTTGAGTTCAGGATTGAGGTTGGATGCTGAATTGATTGT
66 CAATTACAAAATGAAATATCACCACACTTGAGTTCAGGATTGAGGTTGGATGCTGAATTGATTGT
*
46375782 AAGCTGAAATGTACCTAACCTGCGCACAGAAAAACAAAACTGTGCGCTGAGTGTAACTAGTGGTA
131 AAGCTGAAATGTACCTAACCTGCGCACAGAAAAACAAAACTGTGCGCTGAGTATAACTAGTGGTA
46375847 T
196 T
*
46375848 TTGAAACCTAAAATAGCACCACATTAACAAAAAAAAATTATCAACCAAGGACTTCCTAGGTACAT
1 TTGAAACCTAAAATAGCACCACATTAAC-AAAAAAAATTATCAACCAAGGACTTCCTAAGTACAT
*
46375913 GCAATTACAAAATGAAATATCACCACACTTGAGTTCAGGATTGAGGTTGGATGCTGAGTTGATTG
65 GCAATTACAAAATGAAATATCACCACACTTGAGTTCAGGATTGAGGTTGGATGCTGAATTGATTG
46375978 TAAGCTGAAATGTACCTAACCTGCGCACAGAAAAACAAAACTGTGCGCTGAGTATAACTAGTGGT
130 TAAGCTGAAATGTACCTAACCTGCGCACAGAAAAACAAAACTGTGCGCTGAGTATAACTAGTGGT
46376043 AT
195 AT
46376045 TT
1 TT
46376047 CCATAATCCG
Statistics
Matches: 194, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
196 28 0.14
197 166 0.86
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (196 bp):
TTGAAACCTAAAATAGCACCACATTAACAAAAAAAATTATCAACCAAGGACTTCCTAAGTACATG
CAATTACAAAATGAAATATCACCACACTTGAGTTCAGGATTGAGGTTGGATGCTGAATTGATTGT
AAGCTGAAATGTACCTAACCTGCGCACAGAAAAACAAAACTGTGCGCTGAGTATAACTAGTGGTA
T
Done.