Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 154 of 187
Found at i:46377441 original size:5 final size:5
Alignment explanation
Indices: 46377422--46377455 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
46377412 TTCTTCCTTC
*
46377422 TCTTT TC-TT TGTTT TCTTT TCTTT TCTTT TCTTT
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT
46377456 CTAATTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
4 3 0.12
5 23 0.88
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (5 bp):
TCTTT
Found at i:46377457 original size:14 final size:14
Alignment explanation
Indices: 46377412--46377455 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
46377402 AGGCTGTGCG
* *
46377412 TTCTTCCTTCTCTT
1 TTCTTTCTTTTCTT
*
46377426 TTCTTTGTTTTCTT
1 TTCTTTCTTTTCTT
46377440 TTCTTTTCTTTTCTT
1 TTC-TTTCTTTTCTT
46377455 T
1 T
46377456 CTAATTTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.00, C:0.23, G:0.02, T:0.75
Consensus pattern (14 bp):
TTCTTTCTTTTCTT
Found at i:46380252 original size:35 final size:33
Alignment explanation
Indices: 46380200--46380265 Score: 80
Period size: 35 Copynumber: 1.9 Consensus size: 33
46380190 ACTAAAAAGG
* *
46380200 TATATGTATATACAATATTTATACGTGGGTTTTAT
1 TATATATATATACAATATGTATA--TGGGTTTTAT
46380235 TATATATATAATA-AATATGTATATGGGTTTT
1 TATATATAT-ATACAATATGTATATGGGTTTT
46380266 GTAATGCTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 8 0.29
35 17 0.61
36 3 0.11
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.48
Consensus pattern (33 bp):
TATATATATATACAATATGTATATGGGTTTTAT
Found at i:46381246 original size:17 final size:17
Alignment explanation
Indices: 46381226--46381295 Score: 70
Period size: 17 Copynumber: 4.1 Consensus size: 17
46381216 ATGAGTTATG
* *
46381226 ATGTGGTATGCATTGTT
1 ATGTGATATGAATTGTT
46381243 ATGTGATAT-AATCTGTT
1 ATGTGATATGAAT-TGTT
* *
46381260 ATGTGCTATGAAATGTT
1 ATGTGATATGAATTGTT
* *
46381277 ATGTGTTATGAACTGTT
1 ATGTGATATGAATTGTT
46381294 AT
1 AT
46381296 ATAGTATGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
16 2 0.04
17 41 0.91
18 2 0.04
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.46
Consensus pattern (17 bp):
ATGTGATATGAATTGTT
Found at i:46381303 original size:17 final size:17
Alignment explanation
Indices: 46381283--46381341 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 17
46381273 TGTTATGTGT
46381283 TATGAACTGTTATATAG
1 TATGAACTGTTATATAG
* * *
46381300 TATGAACTGCTATTTGG
1 TATGAACTGTTATATAG
*
46381317 TATGAACTATTATATCA-
1 TATGAACTGTTATAT-AG
46381334 TATGAACT
1 TATGAACT
46381342 AATGTTTTAT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (17 bp):
TATGAACTGTTATATAG
Found at i:46381304 original size:34 final size:34
Alignment explanation
Indices: 46381239--46381339 Score: 91
Period size: 34 Copynumber: 3.0 Consensus size: 34
46381229 TGGTATGCAT
*
46381239 TGTTATGTGATAT-AATCTGTTATGT-GCTATGAAA
1 TGTTATGTGATATGAA-CTGTTATATAG-TATGAAA
* *
46381273 TGTTATGTGTTATGAACTGTTATATAGTATGAAC
1 TGTTATGTGATATGAACTGTTATATAGTATGAAA
* * * *
46381307 TGCTATTTGGTATGAACTATTATATCA-TATGAA
1 TGTTATGTGATATGAACTGTTATAT-AGTATGAA
46381340 CTAATGTTTT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
34 53 0.93
35 4 0.07
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.44
Consensus pattern (34 bp):
TGTTATGTGATATGAACTGTTATATAGTATGAAA
Found at i:46387393 original size:16 final size:16
Alignment explanation
Indices: 46387372--46387404 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
46387362 TAATGATATT
*
46387372 TTTTATTTTTAAATAA
1 TTTTATTTTAAAATAA
46387388 TTTTATTTTAAAATAA
1 TTTTATTTTAAAATAA
46387404 T
1 T
46387405 AAGATTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTATTTTAAAATAA
Found at i:46399413 original size:49 final size:49
Alignment explanation
Indices: 46399341--46399440 Score: 157
Period size: 49 Copynumber: 2.0 Consensus size: 49
46399331 TGATTTTCAT
*
46399341 CTAACCACCGACGATGCCCCATATAA-AAGAACTTCCCATTATATAACCA
1 CTAACCACCGACAATGCCCCATATAAGAA-AACTTCCCATTATATAACCA
* *
46399390 CTAACCACCGACAATGCCCCATATAAGAAAACTTCCTATTATGTAACCA
1 CTAACCACCGACAATGCCCCATATAAGAAAACTTCCCATTATATAACCA
46399439 CT
1 CT
46399441 TCGAACATGT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 45 0.96
50 2 0.04
ACGTcount: A:0.38, C:0.32, G:0.08, T:0.22
Consensus pattern (49 bp):
CTAACCACCGACAATGCCCCATATAAGAAAACTTCCCATTATATAACCA
Found at i:46401152 original size:36 final size:36
Alignment explanation
Indices: 46401067--46401152 Score: 127
Period size: 36 Copynumber: 2.4 Consensus size: 36
46401057 ATTCAAAGTT
46401067 TTATGTAAGTTATGATATGATATATATTTATATAAG
1 TTATGTAAGTTATGATATGATATATATTTATATAAG
* * *
46401103 TTATGCAAGTTATGATGTGATATATATTTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATATAAG
* *
46401139 TTCTGTAAATTATG
1 TTATGTAAGTTATG
46401153 GTCCAAAGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (36 bp):
TTATGTAAGTTATGATATGATATATATTTATATAAG
Found at i:46401212 original size:35 final size:35
Alignment explanation
Indices: 46401173--46401239 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
46401163 TTTTTTTATT
46401173 CTTTAAATGATTATGTAAGTTATGATAATCATAAA
1 CTTTAAATGATTATGTAAGTTATGATAATCATAAA
* *
46401208 CTTTAAATGTTTATGTAAGTTATGATTATCAT
1 CTTTAAATGATTATGTAAGTTATGATAATCAT
46401240 CTTTAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.37, C:0.06, G:0.12, T:0.45
Consensus pattern (35 bp):
CTTTAAATGATTATGTAAGTTATGATAATCATAAA
Found at i:46401259 original size:13 final size:13
Alignment explanation
Indices: 46401241--46401265 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46401231 GATTATCATC
46401241 TTTAAATTTTAAG
1 TTTAAATTTTAAG
46401254 TTTAAATTTTAA
1 TTTAAATTTTAA
46401266 CCCTTTAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
TTTAAATTTTAAG
Found at i:46405579 original size:18 final size:18
Alignment explanation
Indices: 46405556--46405592 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
46405546 AATAGGCTGA
*
46405556 GAAAGAAAAGGGTATCGG
1 GAAAGAAAAGGGAATCGG
46405574 GAAAGAAAAGGGAATCGG
1 GAAAGAAAAGGGAATCGG
46405592 G
1 G
46405593 GGGAGAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.05, G:0.41, T:0.08
Consensus pattern (18 bp):
GAAAGAAAAGGGAATCGG
Found at i:46405662 original size:44 final size:46
Alignment explanation
Indices: 46405575--46405678 Score: 140
Period size: 44 Copynumber: 2.3 Consensus size: 46
46405565 GGGTATCGGG
*
46405575 AAAGAAAAGGGAATCGGGGGGAGAGAAATAAAACGGTACCGTTTGCA
1 AAAGAAAAGGGAATC-GGGGGAGAGAAATAAAACGGCACCGTTTGCA
* ** *
46405622 AAAGAAAAGGGAAT-GGGGG-GAGAAATAAAATGGCGTCGTTTGCG
1 AAAGAAAAGGGAATCGGGGGAGAGAAATAAAACGGCACCGTTTGCA
46405666 AAAGAAAAGGGAA
1 AAAGAAAAGGGAA
46405679 GCAGTTTGTA
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
44 33 0.63
45 5 0.10
47 14 0.27
ACGTcount: A:0.44, C:0.08, G:0.36, T:0.12
Consensus pattern (46 bp):
AAAGAAAAGGGAATCGGGGGAGAGAAATAAAACGGCACCGTTTGCA
Found at i:46409163 original size:50 final size:50
Alignment explanation
Indices: 46409053--46409364 Score: 243
Period size: 50 Copynumber: 6.2 Consensus size: 50
46409043 TTCGCCATCC
* * * * * * *
46409053 TAGCTTTAATCTTTTTAACTGCACTGACTGGGAATGTAAGATTCGCTGTTG
1 TAGCTTTAATCTTTTTAACTGCAATGTCAGGG-AGGCAAGATTCACCGTTG
* *
46409104 TAGCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCCAGATTCACCGTTG
1 TAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTTG
* * ** * * * * * * *
46409154 TGGCTTTAATCTGTTCCACTGCATTG-CCGAGAGGTAGGATTCACTGCTG
1 TAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTTG
* * **
46409203 TAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCAATG
1 TAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTTG
* * ** * * * *
46409253 TGGCTTTAATCTGTTCCACTGC-ATCG-CTTGGGAGGTAAGATTCGCTGTTG
1 TAGCTTTAATCTTTTTAACTGCAAT-GTC-AGGGAGGCAAGATTCACCGTTG
* * **
46409303 TAGCTTTAATCTTTTTAACTGTAATGTCAGGGAAGCAAGATTCACCAATG
1 TAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTTG
*
46409353 TGGCTTTAATCT
1 TAGCTTTAATCT
46409365 GTTCCACTAC
Statistics
Matches: 197, Mismatches: 59, Indels: 11
0.74 0.22 0.04
Matches are distributed among these distances:
49 40 0.20
50 126 0.64
51 31 0.16
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (50 bp):
TAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTTG
Found at i:46409329 original size:100 final size:100
Alignment explanation
Indices: 46409088--46409393 Score: 470
Period size: 100 Copynumber: 3.1 Consensus size: 100
46409078 GACTGGGAAT
* * * **
46409088 GTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCCAGATTCACCGTT
1 GTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCAAT
* * *
46409153 GTGGCTTTAATCTGTTCCACTGCATTGC-CGAGAG
66 GTGGCTTTAATCTGTTCCACTGCATCGCTTGGGAG
* * * *
46409187 GTAGGATTCACTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCAAT
1 GTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCAAT
46409252 GTGGCTTTAATCTGTTCCACTGCATCGCTTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCATCGCTTGGGAG
*
46409287 GTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCAGGGAAGCAAGATTCACCAAT
1 GTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCAAT
*
46409352 GTGGCTTTAATCTGTTCCACTACATCGCTTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCATCGCTTGGGAG
*
46409387 ATAAGAT
1 GTAAGAT
46409394 CTGTAATTTT
Statistics
Matches: 187, Mismatches: 19, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
99 83 0.44
100 104 0.56
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (100 bp):
GTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCAAT
GTGGCTTTAATCTGTTCCACTGCATCGCTTGGGAG
Found at i:46409393 original size:50 final size:50
Alignment explanation
Indices: 46409239--46409393 Score: 138
Period size: 50 Copynumber: 3.1 Consensus size: 50
46409229 TCGGGGAAGC
* *
46409239 AAGATTCACCAATGTGGCTTTAATCTGTTCCACTGCATCGCTTGGGAGGT
1 AAGATTCACCAATGTGGCTTTAATCTGTTCCACTACATCGCTTGGGAGAT
* *** * * ** * *
46409289 AAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTA-AT-G-TCAGGGA-AGC
1 AAGATTCACCAATGTGGCTTTAATCTGTTCCAC--TACATCGCT-TGGGAGA-T
46409339 AAGATTCACCAATGTGGCTTTAATCTGTTCCACTACATCGCTTGGGAGAT
1 AAGATTCACCAATGTGGCTTTAATCTGTTCCACTACATCGCTTGGGAGAT
46409389 AAGAT
1 AAGAT
46409394 CTGTAATTTT
Statistics
Matches: 75, Mismatches: 22, Indels: 16
0.66 0.19 0.14
Matches are distributed among these distances:
48 2 0.03
49 3 0.04
50 65 0.87
51 4 0.05
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34
Consensus pattern (50 bp):
AAGATTCACCAATGTGGCTTTAATCTGTTCCACTACATCGCTTGGGAGAT
Found at i:46409724 original size:44 final size:44
Alignment explanation
Indices: 46409632--46409725 Score: 152
Period size: 44 Copynumber: 2.1 Consensus size: 44
46409622 CATTTATTTT
* *
46409632 AATCCGCTCCACTGTAATCTCAGGGAGATACGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* *
46409676 AATCTGCTCCTCTGTAATCTCAGGGAGATAAGATTTCTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
46409720 AATCTG
1 AATCTG
46409726 ATGCGATCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
Found at i:46409729 original size:142 final size:142
Alignment explanation
Indices: 46409440--46409822 Score: 633
Period size: 142 Copynumber: 2.7 Consensus size: 142
46409430 GAGATAAGAC
* * *
46409440 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTG
*
46409505 TAATCTCAGGGAG-TAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
*
46409569 TCTGGCTTCAAT
131 TCTAGCTTCAAT
*
46409581 CTGATGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATCATTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTG
* *
46409646 TAATCTCAGGGAGATACGATTACTAGCTTCAATCTGCTCCTCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
46409711 TCTAGCTTCAAT
131 TCTAGCTTCAAT
* * *
46409723 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGACCTTTTATTTTAATCCGCTCCACTA
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTG
* * *
46409788 TAATTTCAGGGAGATAATATTACTAGCTTAAATCT
66 TAATCTCAGGGAGATAAGATTACTAGCTTCAATCT
46409823 ACTTCCTTAT
Statistics
Matches: 226, Mismatches: 15, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
141 74 0.33
142 152 0.67
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (142 bp):
CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTG
TAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
TCTAGCTTCAAT
Found at i:46409986 original size:131 final size:130
Alignment explanation
Indices: 46409837--46410325 Score: 740
Period size: 131 Copynumber: 3.8 Consensus size: 130
46409827 CCTTATACTT
* * *
46409837 GAAGATAAGATTTGCCGTCTTCGGTCTGCTCCGCTACTACTTAGGGAA-ACAAGATCTACAATTT
1 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTA-GGAAGACAAGATCTACAATTT
*
46409901 CCAATCTATTCCACTGCTGGTCAGGGACATAGGACTTGTGACTTAAATCTGTTTCCCTACTCCTG
65 CCAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTG-CTTAAATCTGTTTCCCTACTCCTG
46409966 GA
129 GA
* *
46409968 GAAGATAAGATTCACCGTCTTCGATCTACTCCGCTACTGCTTAGGAAGACAAGATCTACAATTTC
1 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGAAGACAAGATCTACAATTTC
* *
46410033 CAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTGGCTTAAATATGTTTCCCTACTCCT-A
66 CAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGT-GCTTAAATCTGTTTCCCTACTCCTGG
46410097 A
130 A
* * **
46410098 GGAAGATAAGATTCGCCATTTTTAATCTGCTCCGCTACTGCTTAGGAAGACAAGATCTACAATTT
1 -GAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGAAGACAAGATCTACAATTT
*
46410163 CCAACCTATTCCACTGCTGGTCAGAGACATAGGAC-T-TG--TAAATCTGTTTCCCTACTCCTGG
65 CCAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTGCTTAAATCTGTTTCCCTACTCCTGG
46410224 A
130 A
**
46410225 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAAGGAA-ACAAGATCTGTAATTT
1 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTT-AGGAAGACAAGATCTACAATTT
*
46410289 CCAACCTATTCCACTGCTGGTCAAGGACATAGGACTT
65 CCAACCTATTCCACTGCTGGTCAGGGACATAGGACTT
46410326 ATGATTTCAC
Statistics
Matches: 327, Mismatches: 25, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
126 105 0.32
127 7 0.02
128 1 0.00
129 1 0.00
130 6 0.02
131 206 0.63
132 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (130 bp):
GAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGAAGACAAGATCTACAATTTC
CAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTGCTTAAATCTGTTTCCCTACTCCTGGA
Found at i:46411595 original size:7 final size:7
Alignment explanation
Indices: 46411575--46411618 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
46411565 TTAGCCTCTC
46411575 CATTTTT
1 CATTTTT
*
46411582 ACTTTTTT
1 -CATTTTT
46411590 CATTTTT
1 CATTTTT
46411597 CATTTTT
1 CATTTTT
*
46411604 TATTTTT
1 CATTTTT
46411611 CATCTTTT
1 CAT-TTTT
46411619 TTTTTTGAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
7 21 0.68
8 10 0.32
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.73
Consensus pattern (7 bp):
CATTTTT
Found at i:46411595 original size:15 final size:15
Alignment explanation
Indices: 46411575--46411620 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
46411565 TTAGCCTCTC
46411575 CATTTTTACTTTTTT
1 CATTTTTACTTTTTT
46411590 CATTTTT-CATTTTTT
1 CATTTTTAC-TTTTTT
46411605 -ATTTTTCATCTTTTTT
1 CATTTTT-A-CTTTTTT
46411621 TTTTGAATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 7 0.26
15 13 0.48
16 6 0.22
17 1 0.04
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (15 bp):
CATTTTTACTTTTTT
Found at i:46411623 original size:14 final size:14
Alignment explanation
Indices: 46411584--46411624 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
46411574 CCATTTTTAC
46411584 TTTTTTCATTTTTCA
1 TTTTTT-ATTTTTCA
46411599 TTTTTTATTTTTCA
1 TTTTTTATTTTTCA
46411613 TCTTTTT-TTTTT
1 T-TTTTTATTTTT
46411625 GAATTGGTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTTATTTTTCA
Found at i:46418435 original size:3 final size:3
Alignment explanation
Indices: 46418429--46418484 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
46418419 AATAATTTAT
*
46418429 TTA TTA TTA TTA TTA TTA TAA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
46418477 TTA TTA TT
1 TTA TTA TT
46418485 TTGTTTATTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:46420282 original size:26 final size:26
Alignment explanation
Indices: 46420236--46420286 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
46420226 TGAGAAAGCG
*
46420236 TCGCTAAAAAATGAGCTTTAGCGGCAT
1 TCGCTAAAAAAT-AGCATTAGCGGCAT
46420263 TCGCT-AAAAATATGCATTAGCGGC
1 TCGCTAAAAAATA-GCATTAGCGGC
46420287 GTTTCCGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 1 0.05
26 16 0.73
27 5 0.23
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (26 bp):
TCGCTAAAAAATAGCATTAGCGGCAT
Found at i:46420500 original size:41 final size:41
Alignment explanation
Indices: 46420455--46420618 Score: 156
Period size: 41 Copynumber: 4.0 Consensus size: 41
46420445 TTTAATCAAC
*
46420455 CGCCGCTAATGCTAAGGTATTTAGCGGCGTTTTCTTTGAAA-
1 CGCCGCTAATGCTAAGGTTTTTAGCGGCGTTTT-TTTGAAAG
** *
46420496 CGCCGCTAATG-TTTGGTCTTTTAGCGGCG--TTTTTAAATACG
1 CGCCGCTAATGCTAAGGT-TTTTAGCGGCGTTTTTTTGAA-A-G
* * *
46420537 CGCCGCTAAAGCTAAGATTTTTAGTGGCGTTTTTTTGAGAAG
1 CGCCGCTAATGCTAAGGTTTTTAGCGGCGTTTTTTTGA-AAG
* * *
46420579 CGCCGCTAATGTTAGGGGTTTTAGCGGCGTTTTTGTTGAA
1 CGCCGCTAATGCTAAGGTTTTTAGCGGCGTTTTT-TTGAA
46420619 GTGCCGCAAA
Statistics
Matches: 98, Mismatches: 16, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
38 5 0.05
39 3 0.03
40 4 0.04
41 41 0.42
42 33 0.34
43 11 0.11
44 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.37
Consensus pattern (41 bp):
CGCCGCTAATGCTAAGGTTTTTAGCGGCGTTTTTTTGAAAG
Found at i:46420500 original size:83 final size:83
Alignment explanation
Indices: 46420413--46420612 Score: 210
Period size: 83 Copynumber: 2.4 Consensus size: 83
46420403 TTTAAGTATT
* * * * * *
46420413 CGCCGCTAATGGTCGAGGGTTTTCGTGGTGTTTTT-AATCAAC-CGCCGCTAATGCTAAGGTATT
1 CGCCGCTAATGGTCG-GGCTTTTAGCGGCGTTTTTAAAT--ACGCGCCGCTAAAGCTAAGATATT
46420476 TAGCGGCGTTTTCTTTGA-AA-
63 TAGCGGCGTTTT-TTTGAGAAG
* * * *
46420496 CGCCGCTAATGTTTGGTCTTTTAGCGGCGTTTTTAAATACGCGCCGCTAAAGCTAAGATTTTTAG
1 CGCCGCTAATGGTCGGGCTTTTAGCGGCGTTTTTAAATACGCGCCGCTAAAGCTAAGATATTTAG
*
46420561 TGGCGTTTTTTTGAGAAG
66 CGGCGTTTTTTTGAGAAG
* * *
46420579 CGCCGCTAATGTTAGGGGTTTTAGCGGCGTTTTT
1 CGCCGCTAATGGTCGGGCTTTTAGCGGCGTTTTT
46420613 GTTGAAGTGC
Statistics
Matches: 99, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
81 7 0.07
82 45 0.45
83 47 0.47
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.36
Consensus pattern (83 bp):
CGCCGCTAATGGTCGGGCTTTTAGCGGCGTTTTTAAATACGCGCCGCTAAAGCTAAGATATTTAG
CGGCGTTTTTTTGAGAAG
Found at i:46420560 original size:82 final size:83
Alignment explanation
Indices: 46420455--46420612 Score: 230
Period size: 82 Copynumber: 1.9 Consensus size: 83
46420445 TTTAATCAAC
* * * *
46420455 CGCCGCTAATGCTAAGGTATTTAGCGGCGTTTTCTTTGA-AA-CGCCGCTAATGTTTGGTCTTTT
1 CGCCGCTAAAGCTAAGATATTTAGCGGCGTTTT-TTTGAGAAGCGCCGCTAATGTTAGGGCTTTT
46420518 AGCGGCGTTTTTAAATACG
65 AGCGGCGTTTTTAAATACG
* * *
46420537 CGCCGCTAAAGCTAAGATTTTTAGTGGCGTTTTTTTGAGAAGCGCCGCTAATGTTAGGGGTTTTA
1 CGCCGCTAAAGCTAAGATATTTAGCGGCGTTTTTTTGAGAAGCGCCGCTAATGTTAGGGCTTTTA
46420602 GCGGCGTTTTT
66 GCGGCGTTTTT
46420613 GTTGAAGTGC
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 5 0.07
82 31 0.46
83 31 0.46
ACGTcount: A:0.19, C:0.18, G:0.27, T:0.37
Consensus pattern (83 bp):
CGCCGCTAAAGCTAAGATATTTAGCGGCGTTTTTTTGAGAAGCGCCGCTAATGTTAGGGCTTTTA
GCGGCGTTTTTAAATACG
Found at i:46420571 original size:124 final size:124
Alignment explanation
Indices: 46420372--46420611 Score: 263
Period size: 124 Copynumber: 1.9 Consensus size: 124
46420362 TTTGTATTAG
* ** * * * * *
46420372 CGCCGCTAATGCTGTGACTTTTAGCGGCGTTTTTAAGTATTCGCCGCTAATGGTCGAGGGTTTTC
1 CGCCGCTAATGCTGTGACTTTTAGCGGCGTTTTTAAATACGCGCCGCTAAAGCTCAAGAGTTTTA
*
46420437 GTGGTG-TTTTTAATCAACCGCCGCTAATGCTA-AGGTATTTAGCGGCGTTTTCTTTGAAA
66 GTGGCGTTTTTTAA-CAACCGCCGCTAATGCTAGAGGT-TTTAGCGGCGTTTTCTTTGAAA
* * *
46420496 CGCCGCTAATG-TTTGGTCTTTTAGCGGCGTTTTTAAATACGCGCCGCTAAAGCT-AAGATTTTT
1 CGCCGCTAATGCTGT-GACTTTTAGCGGCGTTTTTAAATACGCGCCGCTAAAGCTCAAGAGTTTT
* * * * *
46420559 AGTGGCGTTTTTTTGAGAAGCGCCGCTAATGTTAGGGGTTTTAGCGGCGTTTT
65 AGTGGCG-TTTTTTAACAACCGCCGCTAATGCTAGAGGTTTTAGCGGCGTTTT
46420612 TGTTGAAGTG
Statistics
Matches: 95, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
123 13 0.14
124 73 0.77
125 9 0.09
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.37
Consensus pattern (124 bp):
CGCCGCTAATGCTGTGACTTTTAGCGGCGTTTTTAAATACGCGCCGCTAAAGCTCAAGAGTTTTA
GTGGCGTTTTTTAACAACCGCCGCTAATGCTAGAGGTTTTAGCGGCGTTTTCTTTGAAA
Found at i:46420625 original size:41 final size:40
Alignment explanation
Indices: 46420370--46420625 Score: 131
Period size: 41 Copynumber: 6.2 Consensus size: 40
46420360 TTTTTGTATT
** **
46420370 AGCGCCGCTAATGCT-GTGACTTTTAGCGGCGTTTTTAAGTA
1 AGCGCCGCTAATGCTAG-GGGTTTTAGCGGCGTTTTTTTG-A
** * * * * * * *
46420411 TTCGCCGCTAATGGTCGAGGGTTTTCGTGGTGTTTTTAATCA
1 AGCGCCGCTAATGCTAG-GGGTTTTAGCGGCGTTTTT-TTGA
* *
46420453 ACCGCCGCTAATGCTA-AGGTATTTAGCGGCGTTTTCTTTGA
1 AGCGCCGCTAATGCTAGGGGT-TTTAGCGGCGTTTT-TTTGA
* * * ** *
46420494 AACGCCGCTAATGTTTGGTCTTTTAGCGGCGTTTTTAAAT-A
1 AGCGCCGCTAATGCTAGGGGTTTTAGCGGCGTTTTT--TTGA
* * * ** *
46420535 CGCGCCGCTAAAGCTAAGATTTTTAGTGGCGTTTTTTTGAGA
1 AGCGCCGCTAATGCTAGGGGTTTTAGCGGCGTTTTTTT--GA
*
46420577 AGCGCCGCTAATGTTAGGGGTTTTAGCGGCGTTTTTGTTGA
1 AGCGCCGCTAATGCTAGGGGTTTTAGCGGCGTTTTT-TTGA
*
46420618 AGTGCCGC
1 AGCGCCGC
46420626 AAAAAATATT
Statistics
Matches: 158, Mismatches: 46, Indels: 22
0.70 0.20 0.10
Matches are distributed among these distances:
39 1 0.01
40 4 0.03
41 89 0.56
42 61 0.39
43 3 0.02
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.36
Consensus pattern (40 bp):
AGCGCCGCTAATGCTAGGGGTTTTAGCGGCGTTTTTTTGA
Found at i:46421559 original size:7 final size:7
Alignment explanation
Indices: 46421548--46421581 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
46421538 GGGGTATGAA
*
46421548 TTAGGGA
1 TTAGGGG
46421555 TTAGGGG
1 TTAGGGG
46421562 TTAGGGG
1 TTAGGGG
46421569 TTAGGGG
1 TTAGGGG
46421576 TTAGGG
1 TTAGGG
46421582 TGTCAAGGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.18, C:0.00, G:0.53, T:0.29
Consensus pattern (7 bp):
TTAGGGG
Found at i:46423900 original size:26 final size:26
Alignment explanation
Indices: 46423871--46423927 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
46423861 TCGTTGCATG
*
46423871 ATAATTCTTACTCTATAGCTTATCAA
1 ATAATTCTTACTCTATAGCTTATAAA
*
46423897 ATAATTTTTACTCTATAGCTTATAAA
1 ATAATTCTTACTCTATAGCTTATAAA
46423923 ATAAT
1 ATAAT
46423928 ATAAATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.04, T:0.44
Consensus pattern (26 bp):
ATAATTCTTACTCTATAGCTTATAAA
Found at i:46424668 original size:69 final size:69
Alignment explanation
Indices: 46424515--46424658 Score: 225
Period size: 69 Copynumber: 2.1 Consensus size: 69
46424505 ATGAGAAAAT
** * * * *
46424515 ATTAACATCTATATTTTCAATAATAAATTTTATAATTTTAGAAATAATTGTAAATGTTATTTTCT
1 ATTAACATCTATATTTGGAACAATAAATTTTACAATTTGAAAAATAATTGTAAATGTTATTTTCT
46424580 AAAG
66 AAAG
46424584 ATTAACATCTATATTTGGAACAATAAATTTTACAATTTGAAAAATAATTGTAAATGTTATTTTCT
1 ATTAACATCTATATTTGGAACAATAAATTTTACAATTTGAAAAATAATTGTAAATGTTATTTTCT
*
46424649 AAAT
66 AAAG
46424653 ATTAAC
1 ATTAAC
46424659 CCTTATATTT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.43, C:0.07, G:0.06, T:0.44
Consensus pattern (69 bp):
ATTAACATCTATATTTGGAACAATAAATTTTACAATTTGAAAAATAATTGTAAATGTTATTTTCT
AAAG
Found at i:46424926 original size:16 final size:16
Alignment explanation
Indices: 46424899--46424957 Score: 91
Period size: 16 Copynumber: 3.7 Consensus size: 16
46424889 ATTTTTCCAA
*
46424899 AACTTGCATAATACAT
1 AACTTACATAATACAT
* *
46424915 AATTTACATAATACAC
1 AACTTACATAATACAT
46424931 AACTTACATAATACAT
1 AACTTACATAATACAT
46424947 AACTTACATAA
1 AACTTACATAA
46424958 CTCATTTATA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.49, C:0.19, G:0.02, T:0.31
Consensus pattern (16 bp):
AACTTACATAATACAT
Found at i:46424958 original size:9 final size:9
Alignment explanation
Indices: 46424910--46424959 Score: 54
Period size: 9 Copynumber: 6.0 Consensus size: 9
46424900 ACTTGCATAA
*
46424910 TACATAATT
1 TACATAACT
46424919 TACATAA--
1 TACATAACT
*
46424926 TACACAACT
1 TACATAACT
46424935 TACATAA--
1 TACATAACT
46424942 TACATAACT
1 TACATAACT
46424951 TACATAACT
1 TACATAACT
46424960 CATTTATACT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
7 13 0.37
9 22 0.63
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (9 bp):
TACATAACT
Found at i:46428220 original size:66 final size:66
Alignment explanation
Indices: 46428101--46428248 Score: 208
Period size: 66 Copynumber: 2.2 Consensus size: 66
46428091 AGCAAATTAC
* * * *
46428101 ACAACTTAAAGCGGAGGCAGCATCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGC
1 ACAACTTAAAGCAGATGCAACAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGC
46428166 T
66 T
* *
46428167 ACAACTTAAAGCAGATGCAACAGCGAGAGAAGCTGAGGTTTAATGAAAG-TATGAAGAACTCCAG
1 ACAACTTAAAGCAGATGCAACAGCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCAG
46428231 CT
65 CT
* *
46428233 GCAGCTTAAAGCAGAT
1 ACAACTTAAAGCAGAT
46428249 ACGGCAGCAA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
66 69 0.95
67 4 0.05
ACGTcount: A:0.41, C:0.18, G:0.25, T:0.17
Consensus pattern (66 bp):
ACAACTTAAAGCAGATGCAACAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGC
T
Found at i:46428262 original size:66 final size:66
Alignment explanation
Indices: 46428126--46428270 Score: 193
Period size: 66 Copynumber: 2.2 Consensus size: 66
46428116 GGCAGCATCG
*
46428126 AGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCTACAACTTAAAGCAGATGCAACAGC
1 AGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCTACAACTTAAAGCAGATACAACAGC
*
46428191 G
66 A
* * * * **
46428192 AGAGAAGCTGAGGTTTAATGAAAG-TATGAAGAACTCCAGCTGCAGCTTAAAGCAGATACGGCAG
1 AGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCAGCTACAACTTAAAGCAGATACAACAG
46428256 CA
65 CA
*
46428258 AGAGAAGCAGAGG
1 AGAGAAGCTGAGG
46428271 CTGCAGCGAG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
66 65 0.94
67 4 0.06
ACGTcount: A:0.41, C:0.17, G:0.27, T:0.15
Consensus pattern (66 bp):
AGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCTACAACTTAAAGCAGATACAACAGC
A
Found at i:46428703 original size:43 final size:43
Alignment explanation
Indices: 46428627--46428992 Score: 446
Period size: 43 Copynumber: 8.5 Consensus size: 43
46428617 GTGTTTTTTA
* * * * *
46428627 AAAAACGCCACTAAAGGTCATGATCTTTTGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGG
* * * * *
46428670 AAAAGTGCTGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTTTGG
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTG-TCGG
* *
46428714 -AAAGCGCCGCTAAAGGTTATTGTCTTTAGCGGCGTTTGTCGG
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGG
* * * * *
46428756 ATAAGCGTCGCTAAAGGTTATGGTCTTTAGCGGCATTTGTTGG
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGG
* *
46428799 AAAAGCACCGCTAAAGGTCATTGTCTTTAGCGGCGTTTGTCGG
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGG
* * * *
46428842 ATAAGCACCACTAAAGGTCAGGGTCTTTAGCGGCGTTTGTCGG
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGG
* * * * *
46428885 ATAAGCACCGCTAAAGGTCATGGACCTTAGCGGCATTTGTCGG
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGG
* *
46428928 ATAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGG
46428971 AAAAGCGCCGCTAAAGGTCATG
1 AAAAGCGCCGCTAAAGGTCATG
46428993 TGGTGAAAGT
Statistics
Matches: 278, Mismatches: 43, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
42 3 0.01
43 272 0.98
44 3 0.01
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGG
Found at i:46436542 original size:21 final size:23
Alignment explanation
Indices: 46436500--46436545 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
46436490 TTTTATGTAT
*
46436500 TTTTTAATTTATTAAATAATATA
1 TTTTTAATTTATAAAATAATATA
46436523 TTTTTAATTT-TAAAAT-ATATA
1 TTTTTAATTTATAAAATAATATA
46436544 TT
1 TT
46436546 CACTAATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.32
22 5 0.23
23 10 0.45
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
TTTTTAATTTATAAAATAATATA
Found at i:46436593 original size:21 final size:22
Alignment explanation
Indices: 46436543--46436595 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
46436533 TAAAATATAT
46436543 ATTCA-CTAA-TTA-AATAAAA
1 ATTCATCTAATTTATAATAAAA
46436562 ATTCATCTAATTTATAATAAAA
1 ATTCATCTAATTTATAATAAAA
*
46436584 GTTCAT-TAATTT
1 ATTCATCTAATTT
46436596 TGAAAATTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 5 0.17
20 4 0.13
21 9 0.30
22 12 0.40
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (22 bp):
ATTCATCTAATTTATAATAAAA
Found at i:46437570 original size:24 final size:23
Alignment explanation
Indices: 46437526--46437570 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
46437516 ATTTATCTAA
* *
46437526 TTATATTTAATGATTTTATAAAT
1 TTATATTTAATGAATTAATAAAT
*
46437549 TTATAATTTAATTAATTAATAA
1 TTAT-ATTTAATGAATTAATAA
46437571 TATATTATGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 4 0.22
24 14 0.78
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
TTATATTTAATGAATTAATAAAT
Found at i:46441123 original size:21 final size:21
Alignment explanation
Indices: 46441097--46442349 Score: 1627
Period size: 21 Copynumber: 58.9 Consensus size: 21
46441087 ATATTAGGGC
*
46441097 TAAGTTTAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
* *
46441118 TAAGTTAAGGGCTAGTGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
* *
46441139 TAAGTTAAGGATTTAAGGTTTT
1 TAAGTTAAGG-GTTAGGGTTTT
* * *
46441161 AAAGTTAAGGGTTCGAGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
*
46441182 TAGGTTAAGGGTTAAGGG-TTT
1 TAAGTTAAGGGTT-AGGGTTTT
46441203 TAAGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
*
46441224 TAAGTTAATGGTTTAGGGCTTTT
1 TAAGTTAA-GGGTTAGGG-TTTT
46441247 TATA-TTAAGGGTTAGGGTTTT
1 TA-AGTTAAGGGTTAGGGTTTT
*
46441268 TAGGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
* *
46441289 TTAGTTAAGGGTTTTGGGTTTT
1 TAAGTTAAGGG-TTAGGGTTTT
46441311 TAAGTTAAGGGTTTAGGGTTTT
1 TAAGTTAAGGG-TTAGGGTTTT
* **
46441333 TAGGTTAAGGGTTAAAGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
46441354 TAAGTTAAGGGGTTAGGGTTTT
1 TAAGTTAA-GGGTTAGGGTTTT
* *
46441376 TAGGTTAAAGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
* *
46441397 TAAGTTAATGGTTAGTGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
*
46441418 TAAGTTAAGGATTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
* *
46441439 TAGGTTAAGGGTTACGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
46441460 TAAGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
* *
46441481 TAGGTTAAGGCTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
*
46441502 TAAGTTAAGGGTTAGTGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
46441523 TAAGTTAAGGGTTAGGG-TTT
1 TAAGTTAAGGGTTAGGGTTTT
* *
46441543 TAGGTTAAGGGTTACGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
46441564 TAAGTTAAGGGTTAGGGTTTTT
1 TAAGTTAAGGGTTAGGG-TTTT
*
46441586 TATGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
*
46441607 T-AGATTAAGGGTTAGAGTTTT
1 TAAG-TTAAGGGTTAGGGTTTT
46441628 TAAGTTAAGGGTTTAGGGTTTT
1 TAAGTTAAGGG-TTAGGGTTTT
*
46441650 TAGGTTAAGGGTTAGGGTTTTT
1 TAAGTTAAGGGTTAGGG-TTTT
*
46441672 TATGTTAAGGGTTTAGGGTTTT
1 TAAGTTAAGGG-TTAGGGTTTT
* *
46441694 TAGGTTAA-GGTTAGGGCTTT
1 TAAGTTAAGGGTTAGGGTTTT
* *
46441714 TAGGTTAAGGGTTAGAGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
46441735 TAAGTTAAGGGTTTAGGG-TTT
1 TAAGTTAAGGG-TTAGGGTTTT
* *
46441756 TAAGTTAAGTGTTAGTGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
*
46441777 TAAGTTAAGGATTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
*
46441798 TAAGTTAAGGGTTAGAGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
*
46441819 TAAGTGAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
* *
46441840 TAGGTTATGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
46441861 TAAGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
46441882 TAAGTTAAGGGTTTAGGGTTTT
1 TAAGTTAAGGG-TTAGGGTTTT
46441904 TAAGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
* *
46441925 TAGGTTAAGGGTTAGGGGTTT
1 TAAGTTAAGGGTTAGGGTTTT
46441946 TAAGTTAAGGGTTTAGGGTTTT
1 TAAGTTAAGGG-TTAGGGTTTT
*
46441968 TATGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
*
46441989 TAGGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
46442010 TAAGTTAAGGGTTTAGGGTTTTT
1 TAAGTTAAGGG-TTAGGG-TTTT
* * * *
46442033 TAAATTAAAGGTTAAGGCTTT
1 TAAGTTAAGGGTTAGGGTTTT
*
46442054 TAGGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
* *
46442075 TAAGTTAAGGGTTTAAGATTTT
1 TAAGTTAAGGG-TTAGGGTTTT
*
46442097 TTAGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
* **
46442118 TAGGTTAAGGGTTAGAATTTT
1 TAAGTTAAGGGTTAGGGTTTT
*
46442139 TAAGTTAAGGGTTTACGGTTTT
1 TAAGTTAAGGG-TTAGGGTTTT
* *
46442161 TAGGTTAAGGGTTAGAGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
**
46442182 TAAGTTAAGCTTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
* *
46442203 TAAATTAAGGGTTAGAGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
*
46442224 TAAGTTAAGGGTTAAGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
*
46442245 TAGGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
46442266 TAAGTTAAGGGTTTAAGGGTTTT
1 TAAGTTAAGGG-TT-AGGGTTTT
* * *
46442289 TATGTTAAGGGCTAGGATTTT
1 TAAGTTAAGGGTTAGGGTTTT
*
46442310 TAAGTTAAGGGTTAGTGTTTT
1 TAAGTTAAGGGTTAGGGTTTT
46442331 TAAGTTAAGGGTTAGGGTT
1 TAAGTTAAGGGTTAGGGTT
46442350 AGGGTTTTTG
Statistics
Matches: 1070, Mismatches: 135, Indels: 54
0.85 0.11 0.04
Matches are distributed among these distances:
20 45 0.04
21 726 0.68
22 251 0.23
23 47 0.04
24 1 0.00
ACGTcount: A:0.23, C:0.01, G:0.31, T:0.44
Consensus pattern (21 bp):
TAAGTTAAGGGTTAGGGTTTT
Found at i:46441204 original size:64 final size:63
Alignment explanation
Indices: 46441097--46442349 Score: 1627
Period size: 64 Copynumber: 19.6 Consensus size: 63
46441087 ATATTAGGGC
* * * * *
46441097 TAAGTTTAGGGTTAGGGTTTTTAAGTTAAGGGCTAGTGTTTTTAAGTTAAGGATTTAAGGTTTT
1 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGG-GTTAGGGTTTT
* * * *
46441161 AAAGTTAAGGGTTCGAGTTTTTAGGTTAAGGGTTAAGGG-TTTTAAGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTT-AGGGTTTTTAAGTTAAGGGTTAGGGTTTT
* *
46441224 TAAGTTAATGGTTTAGGGCTTTTTATA-TTAAGGGTTAGGGTTTTTAGGTTAAGGGTTAGGGTTT
1 TAAGTTAA-GGGTTAGGG-TTTTTA-AGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTT
46441288 T
63 T
* * * **
46441289 TTAGTTAAGGGTTTTGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAGGTTAAGGGTTAAAGTTTT
1 TAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
* * * *
46441354 TAAGTTAAGGGGTTAGGGTTTTTAGGTTAAAGGTTAGGGTTTTTAAGTTAATGGTTAGTGTTTT
1 TAAGTTAA-GGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
* * *
46441418 TAAGTTAAGGATTAGGGTTTTTAGGTTAAGGGTTACGGTTTTTAAGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
* * *
46441481 TAGGTTAAGGCTTAGGGTTTTTAAGTTAAGGGTTAGTGTTTTTAAGTTAAGGGTTAGGG-TTT
1 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
* * *
46441543 TAGGTTAAGGGTTACGGTTTTTAAGTTAAGGGTTAGGGTTTTTTATGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGG-TTTTTAAGTTAAGGGTTAGGGTTTT
* *
46441607 T-AGATTAAGGGTTAGAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAGGTTAAGGGTTAGGGTTTT
1 TAAG-TTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAGGG-TTT
46441671 T
63 T
* * * * *
46441672 TATGTTAAGGGTTTAGGGTTTTTAGGTTAA-GGTTAGGGCTTTTAGGTTAAGGGTTAGAGTTTT
1 TAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
* * *
46441735 TAAGTTAAGGGTTTAGGG-TTTTAAGTTAAGTGTTAGTGTTTTTAAGTTAAGGATTAGGGTTTT
1 TAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
* * * *
46441798 TAAGTTAAGGGTTAGAGTTTTTAAGTGAAGGGTTAGGGTTTTTAGGTTATGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
46441861 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
* * *
46441925 TAGGTTAAGGGTTAGGGGTTTTAAGTTAAGGGTTTAGGGTTTTTATGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
* * * * *
46441989 TAGGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTTAAATTAAAGGTTAAGGCTTT
1 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGG-TTTTTAAGTTAAGGGTTAGGGTTTT
* * * *
46442054 TAGGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGATTTTTTAGTTAAGGGTTAGGGTTTT
1 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
* ** * * *
46442118 TAGGTTAAGGGTTAGAATTTTTAAGTTAAGGGTTTACGGTTTTTAGGTTAAGGGTTAGAGTTTT
1 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
** * * *
46442182 TAAGTTAAGCTTTAGGGTTTTTAAATTAAGGGTTAGAGTTTTTAAGTTAAGGGTTAAGGTTTT
1 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
* * * *
46442245 TAGGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGGTTTTTATGTTAAGGGCTAGGATTTT
1 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TT-AGGGTTTTTAAGTTAAGGGTTAGGGTTTT
*
46442310 TAAGTTAAGGGTTAGTGTTTTTAAGTTAAGGGTTAGGGTT
1 TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
46442350 AGGGTTTTTG
Statistics
Matches: 1052, Mismatches: 115, Indels: 45
0.87 0.09 0.04
Matches are distributed among these distances:
62 53 0.05
63 330 0.31
64 411 0.39
65 238 0.23
66 20 0.02
ACGTcount: A:0.23, C:0.01, G:0.31, T:0.44
Consensus pattern (63 bp):
TAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
Found at i:46443057 original size:29 final size:30
Alignment explanation
Indices: 46443024--46443090 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 30
46443014 GTGCTCTCGC
*
46443024 TGGGCCTGGTGATTGAATGGCCCTGA-TGA
1 TGGGCCTGGTGATTGAATGGCCCTCATTGA
** *
46443053 TGGG-CTGGGTGATTGTCTGGGCCTCATTGA
1 TGGGCCT-GGTGATTGAATGGCCCTCATTGA
46443083 TGGGCCTG
1 TGGGCCTG
46443091 AGTCGTCGTC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
28 2 0.06
29 19 0.61
30 8 0.26
31 2 0.06
ACGTcount: A:0.12, C:0.18, G:0.40, T:0.30
Consensus pattern (30 bp):
TGGGCCTGGTGATTGAATGGCCCTCATTGA
Found at i:46443799 original size:20 final size:21
Alignment explanation
Indices: 46443769--46443812 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
46443759 ATACTATTAT
46443769 TTTTAAAAATCT-ATATAATAA
1 TTTTAAAAATCTAATATAA-AA
46443790 TTTT-AAAATCTAATATAAAA
1 TTTTAAAAATCTAATATAAAA
46443810 TTT
1 TTT
46443813 ACCTCGTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (21 bp):
TTTTAAAAATCTAATATAAAA
Found at i:46449567 original size:51 final size:51
Alignment explanation
Indices: 46449506--46449603 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 51
46449496 AAAAAATTAA
46449506 AAATAGGGATTTAAGAGAAATTTA-AGAGGAAATTGAGAGCAAATTGATATT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAAATTGAGAGCAAATTGATATT
* * *
46449557 AAATATGGATTTGAGAGAAATTTGGAAGGAAATTGAGAGCAAATTGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAGAGCAAATTGA
46449604 GAGGAATTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
51 42 0.98
52 1 0.02
ACGTcount: A:0.46, C:0.02, G:0.26, T:0.27
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAGAGCAAATTGATATT
Found at i:46449579 original size:11 final size:11
Alignment explanation
Indices: 46449565--46449630 Score: 50
Period size: 11 Copynumber: 5.9 Consensus size: 11
46449555 TTAAATATGG
46449565 ATTTGAGAGAA
1 ATTTGAGAGAA
46449576 ATTTG-GAAGGAA
1 ATTTGAG-A-GAA
46449588 A-TTGAGAGCAA
1 ATTTGAGAG-AA
*
46449599 A-TTGAGAGGA
1 ATTTGAGAGAA
46449609 ATTTGAGA-AA
1 ATTTGAGAGAA
46449619 ATAATTGAGAGA
1 AT--TTGAGAGA
46449631 GGATTAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
10 7 0.16
11 26 0.58
12 11 0.24
13 1 0.02
ACGTcount: A:0.45, C:0.02, G:0.29, T:0.24
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:46449614 original size:22 final size:22
Alignment explanation
Indices: 46449565--46449620 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
46449555 TTAAATATGG
46449565 ATTTGAGAGAAATTTGGAAGGA
1 ATTTGAGAGAAATTTGGAAGGA
*
46449587 AATTGAGAGCAAA-TT-GAGAGGA
1 ATTTGAGAG-AAATTTGGA-AGGA
46449609 ATTTGAGA-AAAT
1 ATTTGAGAGAAAT
46449621 AATTGAGAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
20 3 0.10
21 2 0.07
22 21 0.72
23 3 0.10
ACGTcount: A:0.45, C:0.02, G:0.29, T:0.25
Consensus pattern (22 bp):
ATTTGAGAGAAATTTGGAAGGA
Found at i:46457709 original size:31 final size:31
Alignment explanation
Indices: 46457671--46457731 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
46457661 GGCCCATTTT
46457671 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAG
1 TATTTTAAAAATATTT-AAAAATTAAAAAAAG
*
46457702 TATTTTAAAAATATTTTAAAATTAAAAAAA
1 TATTTTAAAAATATTTAAAAATTAAAAAAA
46457732 AATTAAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 25 0.89
32 3 0.11
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (31 bp):
TATTTTAAAAATATTTAAAAATTAAAAAAAG
Found at i:46457711 original size:11 final size:11
Alignment explanation
Indices: 46457671--46457764 Score: 65
Period size: 11 Copynumber: 8.9 Consensus size: 11
46457661 GGCCCATTTT
46457671 TATTTT-AAAA
1 TATTTTAAAAA
46457681 -ATTTTAAAAA
1 TATTTTAAAAA
**
46457691 -ATTAAAAAAA
1 TATTTTAAAAA
46457701 GTATTTTAAAAA
1 -TATTTTAAAAA
46457713 TATTTT--AAA
1 TATTTTAAAAA
**
46457722 -ATTAAAAAAA
1 TATTTTAAAAA
* **
46457732 AATTAAAAAAA
1 TATTTTAAAAA
46457743 GTATTTTAAAAA
1 -TATTTTAAAAA
46457755 TATTTTAAAA
1 TATTTTAAAA
46457765 TTAAAAAAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
8 3 0.04
9 8 0.12
10 15 0.22
11 26 0.38
12 16 0.24
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:46457732 original size:42 final size:41
Alignment explanation
Indices: 46457671--46457797 Score: 218
Period size: 42 Copynumber: 3.0 Consensus size: 41
46457661 GGCCCATTTT
**
46457671 TATTTTAAAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTT-AAAATTAAAAAAAATTAAAAAAAGTATTTTAAAAA
46457713 TATTTTAAAATTAAAAAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATT-AAAAAAAATTAAAAAAAGTATTTTAAAAA
46457755 TATTTTAAAATTAAAAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAAATTAAAAAAAGTATTTTAAAAA
46457796 TA
1 TA
46457798 ACGGCCGTCG
Statistics
Matches: 82, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
41 37 0.45
42 45 0.55
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (41 bp):
TATTTTAAAATTAAAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:46457748 original size:31 final size:31
Alignment explanation
Indices: 46457688--46457753 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
46457678 AAAATTTTAA
* **
46457688 AAAATTAAAAAAAGTATTTTAAAAATATTTT
1 AAAATTAAAAAAAGAATTAAAAAAATATTTT
46457719 AAAATTAAAAAAA-AATTAAAAAAAGTATTTT
1 AAAATTAAAAAAAGAATTAAAAAAA-TATTTT
46457750 AAAA
1 AAAA
46457754 ATATTTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
30 8 0.26
31 23 0.74
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (31 bp):
AAAATTAAAAAAAGAATTAAAAAAATATTTT
Found at i:46457771 original size:30 final size:31
Alignment explanation
Indices: 46457730--46457794 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
46457720 AAATTAAAAA
* **
46457730 AAAATTAAAAAAAGTATTTTAAAAA-TATTTT
1 AAAATTAAAAAAA-AATTAAAAAAAGTATTTT
46457761 AAAATT-AAAAAAAATTAAAAAAAGTATTTT
1 AAAATTAAAAAAAAATTAAAAAAAGTATTTT
46457791 AAAA
1 AAAA
46457795 ATAACGGCCG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 8 0.27
30 16 0.53
31 6 0.20
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (31 bp):
AAAATTAAAAAAAAATTAAAAAAAGTATTTT
Found at i:46459389 original size:27 final size:27
Alignment explanation
Indices: 46459359--46459414 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
46459349 CACCTGGACT
*
46459359 GGCGGCACCAGTCGTGCCTGTCAAATA
1 GGCGGCACCAGTCGTGCCTGCCAAATA
** *
46459386 GGCGGCACTGGTCGTGCCTGCCAAGTA
1 GGCGGCACCAGTCGTGCCTGCCAAATA
46459413 GG
1 GG
46459415 TGCCACTGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.18, C:0.29, G:0.36, T:0.18
Consensus pattern (27 bp):
GGCGGCACCAGTCGTGCCTGCCAAATA
Found at i:46459421 original size:27 final size:27
Alignment explanation
Indices: 46459369--46459422 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
46459359 GGCGGCACCA
* *
46459369 GTCGTGCCTGTCAAATAGGCGGCACTG
1 GTCGTGCCTGCCAAATAGGCGCCACTG
* *
46459396 GTCGTGCCTGCCAAGTAGGTGCCACTG
1 GTCGTGCCTGCCAAATAGGCGCCACTG
46459423 CCCTAGCGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.22
Consensus pattern (27 bp):
GTCGTGCCTGCCAAATAGGCGCCACTG
Found at i:46459612 original size:9 final size:10
Alignment explanation
Indices: 46459581--46459659 Score: 55
Period size: 9 Copynumber: 8.3 Consensus size: 10
46459571 AGCATCGGTG
46459581 AAGG-GAAGAA
1 AAGGAGAAG-A
46459591 AAGAGAGAAAGA
1 AAG-GAG-AAGA
46459603 AAGGAG-AGA
1 AAGGAGAAGA
46459612 AAGGAGAAGA
1 AAGGAGAAGA
46459622 AA--AGAAG-
1 AAGGAGAAGA
*
46459629 AAGAAGAAG-
1 AAGGAGAAGA
*
46459638 AAGAAGAAG-
1 AAGGAGAAGA
*
46459647 AAGAAGAAGA
1 AAGGAGAAGA
46459657 AAG
1 AAG
46459660 ACTTTAATTA
Statistics
Matches: 62, Mismatches: 0, Indels: 14
0.82 0.00 0.18
Matches are distributed among these distances:
7 2 0.03
8 5 0.08
9 32 0.52
10 11 0.18
11 4 0.06
12 5 0.08
13 3 0.05
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (10 bp):
AAGGAGAAGA
Found at i:46459629 original size:3 final size:3
Alignment explanation
Indices: 46459616--46459657 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
46459606 GAGAGAAAGG
46459616 AGA AGA A-A AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
46459658 AGACTTTAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:46459683 original size:13 final size:13
Alignment explanation
Indices: 46459665--46459689 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46459655 GAAAGACTTT
46459665 AATTAAGATGTTC
1 AATTAAGATGTTC
46459678 AATTAAGATGTT
1 AATTAAGATGTT
46459690 GTGAAATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (13 bp):
AATTAAGATGTTC
Found at i:46459843 original size:27 final size:27
Alignment explanation
Indices: 46459813--46459904 Score: 76
Period size: 27 Copynumber: 3.2 Consensus size: 27
46459803 TTGTTAGTAA
46459813 TTTAGGATTATGTTATAAATTATTGTG
1 TTTAGGATTATGTTATAAATTATTGTG
** * * *
46459840 TTTATAATTATTTTAAAATTAATTTATTAGTAA
1 TTTAGGATTATGTT---A-TAAATTATT-GT-G
*
46459873 TTTAGGATTATGTTATAAATTGTTGTG
1 TTTAGGATTATGTTATAAATTATTGTG
46459900 TTTAG
1 TTTAG
46459905 TTTAGTATTT
Statistics
Matches: 48, Mismatches: 11, Indels: 12
0.68 0.15 0.17
Matches are distributed among these distances:
27 16 0.33
28 2 0.04
29 7 0.15
30 2 0.04
31 8 0.17
32 2 0.04
33 11 0.23
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (27 bp):
TTTAGGATTATGTTATAAATTATTGTG
Found at i:46459888 original size:60 final size:59
Alignment explanation
Indices: 46459781--46459903 Score: 210
Period size: 60 Copynumber: 2.1 Consensus size: 59
46459771 TGTAATTTTT
*
46459781 TTTATAATTACTTTAAAATTAATTGTTAGTAATTTAGGATTATGTTATAAATTATTGTG
1 TTTATAATTACTTTAAAATTAATTATTAGTAATTTAGGATTATGTTATAAATTATTGTG
* *
46459840 TTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTG
1 TTTATAATTACTTTAAAATTAA-TTATTAGTAATTTAGGATTATGTTATAAATTATTGTG
46459900 TTTA
1 TTTA
46459904 GTTTAGTATT
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
59 21 0.35
60 39 0.65
ACGTcount: A:0.35, C:0.01, G:0.11, T:0.53
Consensus pattern (59 bp):
TTTATAATTACTTTAAAATTAATTATTAGTAATTTAGGATTATGTTATAAATTATTGTG
Found at i:46460274 original size:105 final size:102
Alignment explanation
Indices: 46459983--46460424 Score: 481
Period size: 103 Copynumber: 4.3 Consensus size: 102
46459973 AAATTGTTGT
* * * ** *
46459983 GTTTTGTGAGTTTTTAGTAATGTAAATTTAAAAAAAAATAAAATTATAGTTATTTTGTTAGTAGT
1 GTTTTGTGATTTTTTAGTAATGTAATTTTTAAAAAAAATAATTTTATAGTTATTTTGTTAGTAAT
* *
46460048 TTATGATTAGGTTATAAATTGTTAGTATTT-TGT--G
66 TTATGATTAGGTTATAAATTATTAGTATTTATTTAGG
* * ** * * * *
46460082 CTTTT-TTATTTTTTAGTAATGTAATTTCTTTTAAAAAAT-GTTATAGTTATTTACTTTGTTAGT
1 GTTTTGTGATTTTTTAGTAATGTAATTT-TTAAAAAAAATAATTTTA--TAGTTATTTTGTTAGT
*
46460145 AATTTATGGGATTAGGTTACAAATTATTAGTATTTAATTTAGG
63 AATTTAT--GATTAGGTTATAAATTATTAGTATTT-ATTTAGG
*
46460188 GTTTTGTGATTTTTTAGTAATGTAATTTTTTAAAAAAATAATTTTATAGTTATTTTGTTAGTAAT
1 GTTTTGTGATTTTTTAGTAATGTAATTTTTAAAAAAAATAATTTTATAGTTATTTTGTTAGTAAT
* * *
46460253 TTATGATTAGGTTATATAAATTATTAGTGTTTAGTTATGT
66 TTATGATTAGG-T-TATAAATTATTAGTATTTATTTA-GG
46460293 GTTTTGTGATTTTTTAGTAATGT-A--TTTAAAAAATAATAATTTTATAGTTATTTTGTTAGTAA
1 GTTTTGTGATTTTTTAGTAATGTAATTTTTAAAAAA-AATAATTTTATAGTTATTTTGTTAGTAA
* * *
46460355 TTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTTAGT
65 TTTATGATTAGG-T-TATAAATTATTAGTATTTA-TTTAGG
46460396 GTTTTGTGATTTTTT--TAATGTAATTTTTA
1 GTTTTGTGATTTTTTAGTAATGTAATTTTTA
46460425 TATAATGTAA
Statistics
Matches: 293, Mismatches: 31, Indels: 33
0.82 0.09 0.09
Matches are distributed among these distances:
98 21 0.07
99 12 0.04
100 20 0.07
101 6 0.02
102 33 0.11
103 85 0.29
104 15 0.05
105 61 0.21
106 15 0.05
107 25 0.09
ACGTcount: A:0.31, C:0.01, G:0.15, T:0.53
Consensus pattern (102 bp):
GTTTTGTGATTTTTTAGTAATGTAATTTTTAAAAAAAATAATTTTATAGTTATTTTGTTAGTAAT
TTATGATTAGGTTATAAATTATTAGTATTTATTTAGG
Found at i:46464197 original size:23 final size:22
Alignment explanation
Indices: 46464145--46464197 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
46464135 TCCACGTCTT
*
46464145 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
46464167 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
46464190 TTTCTTTT
1 TTTCTTTT
46464198 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:46467089 original size:33 final size:33
Alignment explanation
Indices: 46467052--46467121 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
46467042 TCCCGGCTCA
* * *
46467052 TATCCACCTCAGTACTCCGCTCCT-TCTGGCCCG
1 TATCCACCGCAGTACTCCACTCCTCTC-GACCCG
*
46467085 TATCCACCGCCGTACTCCACTCCTCTCGACCCG
1 TATCCACCGCAGTACTCCACTCCTCTCGACCCG
46467118 TATC
1 TATC
46467122 TACTCCCCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 30 0.94
34 2 0.06
ACGTcount: A:0.14, C:0.47, G:0.13, T:0.26
Consensus pattern (33 bp):
TATCCACCGCAGTACTCCACTCCTCTCGACCCG
Found at i:46467457 original size:43 final size:43
Alignment explanation
Indices: 46467408--46467536 Score: 110
Period size: 43 Copynumber: 3.1 Consensus size: 43
46467398 TTTTATGGGT
*
46467408 TTTTTTTCCAATTTAAATAATCAACTTTGTATTTATGTAATGA
1 TTTTTTTCCAATTTAAATTATCAACTTTGTATTTATGTAATGA
* * * * *
46467451 TTTTTTTGCC-ATTTTATTTATTAA-TTT-TA-TGA-GT--TTA
1 TTTTTTT-CCAATTTAAATTATCAACTTTGTATTTATGTAATGA
* * *
46467488 ATTTTTTACAATTTAAATTGTCAACTTTGTATTTATGTAATGA
1 TTTTTTTCCAATTTAAATTATCAACTTTGTATTTATGTAATGA
*
46467531 CTTTTT
1 TTTTTT
46467537 CGCTATTTCA
Statistics
Matches: 63, Mismatches: 15, Indels: 16
0.67 0.16 0.17
Matches are distributed among these distances:
36 1 0.02
37 18 0.29
38 3 0.05
39 4 0.06
40 4 0.06
41 4 0.06
42 3 0.05
43 24 0.38
44 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.57
Consensus pattern (43 bp):
TTTTTTTCCAATTTAAATTATCAACTTTGTATTTATGTAATGA
Found at i:46467520 original size:80 final size:78
Alignment explanation
Indices: 46467374--46467569 Score: 259
Period size: 80 Copynumber: 2.5 Consensus size: 78
46467364 ATACAATAAC
* * * *
46467374 TTTTTTTTCCATTTTAGTTATTAATTTTATG-GGTTTTTTTTCCAATTTAAATAATCAACTTTGT
1 TTTTTTTGCCATTTTAATTATTAATTTTATGAGTTTTTTTTTACAATTTAAATAATCAACTTTGT
46467438 ATTTATGTAATGA
66 ATTTATGTAATGA
* **
46467451 TTTTTTTGCCATTTTATTTATTAATTTTATGAGTTTAATTTTTTACAATTTAAATTGTCAACTTT
1 TTTTTTTGCCATTTTAATTATTAATTTTATGAGTTT--TTTTTTACAATTTAAATAATCAACTTT
46467516 GTATTTATGTAATGA
64 GTATTTATGTAATGA
* * * * *
46467531 CTTTTTCGCTATTTCAATTATTAATTTTAGGAGTTTTTT
1 TTTTTTTGCCATTTTAATTATTAATTTTATGAGTTTTTT
46467570 GCAATTTAAA
Statistics
Matches: 104, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
77 29 0.28
78 6 0.06
80 69 0.66
ACGTcount: A:0.26, C:0.08, G:0.09, T:0.58
Consensus pattern (78 bp):
TTTTTTTGCCATTTTAATTATTAATTTTATGAGTTTTTTTTTACAATTTAAATAATCAACTTTGT
ATTTATGTAATGA
Found at i:46468917 original size:20 final size:19
Alignment explanation
Indices: 46468879--46468925 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
46468869 TGAAATCTCA
46468879 TTCCTATTTATAGAAATTT
1 TTCCTATTTATAGAAATTT
*
46468898 TTCCTATTTATAGAAAATT
1 TTCCTATTTATAGAAATTT
*
46468917 TTCATATTT
1 TTCCTATTT
46468926 CTTCATAGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.32, C:0.11, G:0.04, T:0.53
Consensus pattern (19 bp):
TTCCTATTTATAGAAATTT
Found at i:46472283 original size:22 final size:23
Alignment explanation
Indices: 46472240--46472283 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
46472230 GGGGGGAAAA
**
46472240 TAAAAGTTTTGGGGTTGAGGGAG
1 TAAAAGTTTTGGGGGAGAGGGAG
*
46472263 TAAAA-TTTTGGGGGAGGGGGA
1 TAAAAGTTTTGGGGGAGAGGGA
46472284 TGGGTTTGGG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.27, C:0.00, G:0.45, T:0.27
Consensus pattern (23 bp):
TAAAAGTTTTGGGGGAGAGGGAG
Found at i:46472368 original size:28 final size:30
Alignment explanation
Indices: 46472311--46472368 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
46472301 GGGGTAGGAT
* *
46472311 GGGAGAGGAGTAAAAGTTTTGGGGGGAAAA
1 GGGAGAGGAGTAAAAGTTTTGAGGAGAAAA
46472341 GGGAG-GGAGTAAAAGTTTT-AGGAGAAAA
1 GGGAGAGGAGTAAAAGTTTTGAGGAGAAAA
46472369 TAAAGAGGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 7 0.27
29 14 0.54
30 5 0.19
ACGTcount: A:0.40, C:0.00, G:0.43, T:0.17
Consensus pattern (30 bp):
GGGAGAGGAGTAAAAGTTTTGAGGAGAAAA
Found at i:46472536 original size:16 final size:16
Alignment explanation
Indices: 46472515--46472562 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
46472505 GTATATACTC
*
46472515 CACATACACACATACA
1 CACATACATACATACA
46472531 CACATACATACATACA
1 CACATACATACATACA
* *
46472547 GACACACATACATACA
1 CACATACATACATACA
46472563 TCAAATGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.50, C:0.33, G:0.02, T:0.15
Consensus pattern (16 bp):
CACATACATACATACA
Found at i:46472541 original size:4 final size:4
Alignment explanation
Indices: 46472516--46472563 Score: 60
Period size: 4 Copynumber: 12.0 Consensus size: 4
46472506 TATATACTCC
* * * *
46472516 ACAT ACAC ACAT ACAC ACAT ACAT ACAT ACAG ACAC ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
46472564 CAAATGAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.50, C:0.31, G:0.02, T:0.17
Consensus pattern (4 bp):
ACAT
Found at i:46474200 original size:50 final size:52
Alignment explanation
Indices: 46474060--46474161 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 52
46474050 ACGAGAAAAA
*
46474060 AAAATATTTTTT-AGGGTTTTGGCCAATAGATGGCCGACACCAACACTTAAT
1 AAAATATTTTTTGGGGGTTTTGGCCAATAGATGGCCGACACCAACACTTAAT
*
46474111 AAAATATTTTTTGGGGGTTTTGGCCAATAGAGGGCCGACACCAACACTTAA
1 AAAATATTTTTTGGGGGTTTTGGCCAATAGATGGCCGACACCAACACTTAA
46474162 ATTTCTTTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 12 0.25
52 36 0.75
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (52 bp):
AAAATATTTTTTGGGGGTTTTGGCCAATAGATGGCCGACACCAACACTTAAT
Found at i:46475500 original size:5 final size:5
Alignment explanation
Indices: 46475492--46475518 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
46475482 ATGGGCCGGG
46475492 CGGCC CGGCC CGGCC CGGCC CGGCC CG
1 CGGCC CGGCC CGGCC CGGCC CGGCC CG
46475519 ATGGCCCGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.59, G:0.41, T:0.00
Consensus pattern (5 bp):
CGGCC
Found at i:46475709 original size:23 final size:22
Alignment explanation
Indices: 46475664--46475710 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
46475654 AGAAAATATA
*
46475664 TTAAATATATATATTTTTATTT
1 TTAAATATATATAGTTTTATTT
*
46475686 TTAAA-ATATACTAGTTTTAGTT
1 TTAAATATATA-TAGTTTTATTT
46475708 TTA
1 TTA
46475711 TTTTAAGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.57
Consensus pattern (22 bp):
TTAAATATATATAGTTTTATTT
Found at i:46475821 original size:53 final size:53
Alignment explanation
Indices: 46475745--46475925 Score: 194
Period size: 53 Copynumber: 3.7 Consensus size: 53
46475735 TTAGATTTTG
46475745 TTAC-AACAATTAATACAATTAACAATTAATAATTTGATATAATTTGATAATT
1 TTACTAACAATTAATACAATTAACAATTAATAATTTGATATAATTTGATAATT
* * *
46475797 TTACTAACAATTAATACAATTAACAATTAATAATTT--TACTAA---CAAAATG
1 TTACTAACAATTAATACAATTAACAATTAATAATTTGATA-TAATTTGATAATT
*
46475846 TTAGTAACAA-T--T--AA-T---AATTAATAATTTGATATAATTTGATAATT
1 TTACTAACAATTAATACAATTAACAATTAATAATTTGATATAATTTGATAATT
* *
46475890 TTAGTAACAATTAATACAATTAATAATTAATAATTT
1 TTACTAACAATTAATACAATTAACAATTAATAATTT
46475926 TACTAACAAA
Statistics
Matches: 106, Mismatches: 7, Indels: 31
0.74 0.05 0.22
Matches are distributed among these distances:
40 12 0.11
41 3 0.03
42 2 0.02
43 1 0.01
44 16 0.15
45 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 15 0.14
50 1 0.01
51 2 0.02
52 7 0.07
53 43 0.41
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (53 bp):
TTACTAACAATTAATACAATTAACAATTAATAATTTGATATAATTTGATAATT
Found at i:46475867 original size:93 final size:93
Alignment explanation
Indices: 46475759--46475942 Score: 341
Period size: 93 Copynumber: 2.0 Consensus size: 93
46475749 AACAATTAAT
46475759 ACAATTAACAATTAATAATTTGATATAATTTGATAATTTTACTAACAATTAATACAATTAACAAT
1 ACAATTAACAATTAATAATTTGATATAATTTGATAATTTTACTAACAATTAATACAATTAACAAT
46475824 TAATAATTTTACTAACAAAATGTTAGTA
66 TAATAATTTTACTAACAAAATGTTAGTA
* * *
46475852 ACAATTAATAATTAATAATTTGATATAATTTGATAATTTTAGTAACAATTAATACAATTAATAAT
1 ACAATTAACAATTAATAATTTGATATAATTTGATAATTTTACTAACAATTAATACAATTAACAAT
46475917 TAATAATTTTACTAACAAAATGTTAG
66 TAATAATTTTACTAACAAAATGTTAG
46475943 ATTTTACAAA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 88 1.00
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.40
Consensus pattern (93 bp):
ACAATTAACAATTAATAATTTGATATAATTTGATAATTTTACTAACAATTAATACAATTAACAAT
TAATAATTTTACTAACAAAATGTTAGTA
Found at i:46476006 original size:16 final size:16
Alignment explanation
Indices: 46475987--46476043 Score: 96
Period size: 16 Copynumber: 3.6 Consensus size: 16
46475977 AATTAGATAC
46475987 AATTTTAATAACAATT
1 AATTTTAATAACAATT
*
46476003 AATTTTGATAACAATT
1 AATTTTAATAACAATT
46476019 AATTTTAATAACAATT
1 AATTTTAATAACAATT
*
46476035 AGTTTTAAT
1 AATTTTAAT
46476044 TTTAATAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.46
Consensus pattern (16 bp):
AATTTTAATAACAATT
Found at i:46476026 original size:22 final size:23
Alignment explanation
Indices: 46476017--46476077 Score: 81
Period size: 22 Copynumber: 2.7 Consensus size: 23
46476007 TTGATAACAA
*
46476017 TTAATTTTAATAACAA-T-TAGTT
1 TTAATTTTAATAA-AAGTATAATT
46476039 TTAATTTTAATAAAAGTATAATT
1 TTAATTTTAATAAAAGTATAATT
46476062 TTAATTTTAATTAAAA
1 TTAATTTTAA-TAAAA
46476078 AATGGGCCGG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
21 2 0.06
22 14 0.40
23 14 0.40
24 5 0.14
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (23 bp):
TTAATTTTAATAAAAGTATAATT
Found at i:46478164 original size:6 final size:6
Alignment explanation
Indices: 46478133--46478187 Score: 53
Period size: 6 Copynumber: 9.5 Consensus size: 6
46478123 AATAAAATTT
* *
46478133 AATTGA AAGTTG- CATTG- AATTGA AATTCA AATTGA AATTGA AA-TGA
1 AATTGA AA-TTGA AATTGA AATTGA AATTGA AATTGA AATTGA AATTGA
*
46478179 AATTCA AAT
1 AATTGA AAT
46478188 AAAATAAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
5 12 0.29
6 26 0.63
7 3 0.07
ACGTcount: A:0.47, C:0.05, G:0.15, T:0.33
Consensus pattern (6 bp):
AATTGA
Found at i:46478165 original size:12 final size:12
Alignment explanation
Indices: 46478150--46478187 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
46478140 AGTTGCATTG
46478150 AATTGAAATTCA
1 AATTGAAATTCA
*
46478162 AATTGAAATTGA
1 AATTGAAATTCA
46478174 AA-TGAAATTCA
1 AATTGAAATTCA
46478185 AAT
1 AAT
46478188 AAAATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.32
Consensus pattern (12 bp):
AATTGAAATTCA
Found at i:46478181 original size:11 final size:11
Alignment explanation
Indices: 46478153--46478192 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
46478143 TGCATTGAAT
46478153 TGAAATTCAAA
1 TGAAATTCAAA
*
46478164 TTGAAATTGAAA
1 -TGAAATTCAAA
46478176 TGAAATTCAAA
1 TGAAATTCAAA
*
46478187 TAAAAT
1 TGAAAT
46478193 AAAAATTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.55, C:0.05, G:0.10, T:0.30
Consensus pattern (11 bp):
TGAAATTCAAA
Found at i:46480422 original size:79 final size:78
Alignment explanation
Indices: 46480322--46480480 Score: 212
Period size: 79 Copynumber: 2.0 Consensus size: 78
46480312 TGTTGATACG
*** *
46480322 CCTTTGCGTTACTCTATTGATGAAGAATATGTGACATCT-AATTATGTTAGATTGATTGTTACTG
1 CCTTTGCGTTACTCTATTGATGAAGAATACACGACATCTGAA-TATGTTAGACTGATTGTTACTG
46480386 ATTCTGATTTATAA
65 ATTCTGATTTATAA
* * * * *
46480400 CCTTCTGCGTTACTTTGTTGATGAGGAATACACGATATCTGAATATGTTAGACTGATTGTTATTG
1 CCTT-TGCGTTACTCTATTGATGAAGAATACACGACATCTGAATATGTTAGACTGATTGTTACTG
46480465 ATTCTGATTTATAA
65 ATTCTGATTTATAA
46480479 CC
1 CC
46480481 GTGCATGTGA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
78 4 0.06
79 64 0.91
80 2 0.03
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (78 bp):
CCTTTGCGTTACTCTATTGATGAAGAATACACGACATCTGAATATGTTAGACTGATTGTTACTGA
TTCTGATTTATAA
Found at i:46483552 original size:22 final size:20
Alignment explanation
Indices: 46483503--46483552 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 20
46483493 CTTTAGTTTG
*
46483503 TAATTATTCTATTTTTCAATA
1 TAATTATT-TATTTTTCAAAA
46483524 TAA--ATTTAATTTTTCTAAAA
1 TAATTATTT-ATTTTTC-AAAA
46483544 TAATTATTT
1 TAATTATTT
46483553 GTTTGGATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
18 1 0.04
19 10 0.42
20 6 0.25
21 3 0.12
22 4 0.17
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (20 bp):
TAATTATTTATTTTTCAAAA
Found at i:46483625 original size:17 final size:17
Alignment explanation
Indices: 46483572--46483625 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 17
46483562 AATGACTTCA
*
46483572 AAATATTTAATA-GAAC
1 AAATATATAATACGAAC
* *
46483588 AAATATATAATTCGAAA
1 AAATATATAATACGAAC
46483605 AAATA-ATAATACGCAAC
1 AAATATATAATACG-AAC
46483622 AAAT
1 AAAT
46483626 TAAATTTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
16 17 0.55
17 14 0.45
ACGTcount: A:0.59, C:0.09, G:0.06, T:0.26
Consensus pattern (17 bp):
AAATATATAATACGAAC
Found at i:46483728 original size:89 final size:88
Alignment explanation
Indices: 46483588--46483832 Score: 323
Period size: 89 Copynumber: 2.7 Consensus size: 88
46483578 TTAATAGAAC
* *
46483588 AAATATATAATTCGAA-AAAATAATAATACGCAAC-AAATTAAATTTATAGATACAAGAAAATAC
1 AAATATAAAATTCGAACAAAA-AATAATACG--ACTAAATTAAATTTACAGATACAAGAAAATAC
* * *
46483651 AAACATTCTAGAATATTAATACACGA
63 AAACATTCTAAAAAATCAATACACGA
*
46483677 AAATATAAAATTCGAACAATAAATAATACAGACTAAATTAAATTTACAGATACAAGAAAATACAA
1 AAATATAAAATTCGAACAAAAAATAATAC-GACTAAATTAAATTTACAGATACAAGAAAATACAA
46483742 ACATTCTAAAAAATCAATACACGA
65 ACATTCTAAAAAATCAATACACGA
* ** * *
46483766 AAATATAAAATTCGAACAACAAATAATACTGACTAAATTTGATTTACATATACAAAAATAATACA
1 AAATATAAAATTCGAACAAAAAATAATAC-GACTAAATTAAATTTACAGATACAAGAA-AATACA
46483831 AA
64 AA
46483833 AAATTTGAAT
Statistics
Matches: 140, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
88 2 0.01
89 126 0.90
90 12 0.09
ACGTcount: A:0.57, C:0.12, G:0.06, T:0.25
Consensus pattern (88 bp):
AAATATAAAATTCGAACAAAAAATAATACGACTAAATTAAATTTACAGATACAAGAAAATACAAA
CATTCTAAAAAATCAATACACGA
Found at i:46489994 original size:19 final size:19
Alignment explanation
Indices: 46489939--46490031 Score: 80
Period size: 19 Copynumber: 4.8 Consensus size: 19
46489929 TTGGCAGTCG
* *
46489939 GTTAGAAAATTTGGTGTTT
1 GTTAGAAATTTTGGTATTT
***
46489958 GTTAGAAATTTCAATATTT
1 GTTAGAAATTTTGGTATTT
*
46489977 GTTAGAGATTTTGGTATTT
1 GTTAGAAATTTTGGTATTT
* *
46489996 ATTA-AAGATTTTGATATTT
1 GTTAGAA-ATTTTGGTATTT
*
46490015 GGTTACAAATTTTGGTA
1 -GTTAGAAATTTTGGTA
46490032 CCCGTAAGAG
Statistics
Matches: 57, Mismatches: 14, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
18 1 0.02
19 43 0.75
20 11 0.19
21 2 0.04
ACGTcount: A:0.30, C:0.02, G:0.19, T:0.48
Consensus pattern (19 bp):
GTTAGAAATTTTGGTATTT
Found at i:46490044 original size:39 final size:36
Alignment explanation
Indices: 46490000--46490100 Score: 102
Period size: 32 Copynumber: 2.8 Consensus size: 36
46489990 GTATTTATTA
*
46490000 AAGATTTTGATATTTGGTTACAAATTTTGGTACCCGT
1 AAGA-TTTGATATTTGGTTACAAATTTTGGTACCCAT
*
46490037 AAGA---GAT-TTTGGTTACAAATTTTGGTATCCATT
1 AAGATTTGATATTTGGTTACAAATTTTGGTACCCA-T
* *
46490070 AGAGACTTTGGTATTTGTTTACAAATTTTGG
1 A-AGA-TTTGATATTTGGTTACAAATTTTGG
46490101 CAACTATTAG
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
32 22 0.42
33 5 0.09
34 3 0.06
37 4 0.08
38 2 0.04
39 17 0.32
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.44
Consensus pattern (36 bp):
AAGATTTGATATTTGGTTACAAATTTTGGTACCCAT
Found at i:46490053 original size:32 final size:32
Alignment explanation
Indices: 46490012--46490081 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
46490002 GATTTTGATA
* *
46490012 TTTGGTTACAAATTTTGGTACCCGTAAGAGAT
1 TTTGGTTACAAATTTTGGTACCCATAAGAGAC
* *
46490044 TTTGGTTACAAATTTTGGTATCCATTAGAGAC
1 TTTGGTTACAAATTTTGGTACCCATAAGAGAC
46490076 TTTGGT
1 TTTGGT
46490082 ATTTGTTTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.41
Consensus pattern (32 bp):
TTTGGTTACAAATTTTGGTACCCATAAGAGAC
Found at i:46490122 original size:39 final size:39
Alignment explanation
Indices: 46490044--46490127 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 39
46490034 CGTAAGAGAT
* * * *
46490044 TTTGGTTACAAATTTTGGTATCCATTAGAGACTTTGGTA
1 TTTGTTTACAAATTTTGGCAACCATTAGAGAATTTGGTA
*
46490083 TTTGTTTACAAATTTTGGCAACTATTAGA-AATTTGGGTA
1 TTTGTTTACAAATTTTGGCAACCATTAGAGAATTT-GGTA
*
46490122 TATGTT
1 TTTGTT
46490128 AGAGATTTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
38 4 0.11
39 34 0.89
ACGTcount: A:0.27, C:0.08, G:0.19, T:0.45
Consensus pattern (39 bp):
TTTGTTTACAAATTTTGGCAACCATTAGAGAATTTGGTA
Found at i:46490150 original size:23 final size:23
Alignment explanation
Indices: 46490120--46490166 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
46490110 GAAATTTGGG
46490120 TATATGTTAGAGATTTCAATATT
1 TATATGTTAGAGATTTCAATATT
*
46490143 TATATGTTAGAGGTTTCAATATT
1 TATATGTTAGAGATTTCAATATT
46490166 T
1 T
46490167 GGTTAGAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.04, G:0.15, T:0.49
Consensus pattern (23 bp):
TATATGTTAGAGATTTCAATATT
Found at i:46490668 original size:6 final size:6
Alignment explanation
Indices: 46490657--46490686 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
46490647 GGGCACTTCG
46490657 ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA
1 ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA
46490687 GACAACTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTTCA
Found at i:46494910 original size:607 final size:607
Alignment explanation
Indices: 46493758--46494971 Score: 2419
Period size: 607 Copynumber: 2.0 Consensus size: 607
46493748 TCGTGGTTTT
*
46493758 TCTTTACGACTATTGTCGCCGTTGCCATTGCCATCAACAATATCTTCCTTGTGATCCATTTCACA
1 TCTTTACCACTATTGTCGCCGTTGCCATTGCCATCAACAATATCTTCCTTGTGATCCATTTCACA
46493823 TACGCCGCTTATATCGGACTTGGAAGACCCAAGCTTGACCACGGACTCAACTACCGTCATGGCTT
66 TACGCCGCTTATATCGGACTTGGAAGACCCAAGCTTGACCACGGACTCAACTACCGTCATGGCTT
46493888 CCGACAGCTTTTGGACACCTCTTTGTTCCACCTCCTGTCTGACCCACGGCTTCAATCCATTCTGT
131 CCGACAGCTTTTGGACACCTCTTTGTTCCACCTCCTGTCTGACCCACGGCTTCAATCCATTCTGT
46493953 AAAGCAAGCAATGCTTCTTCCTCGGTCACATCTGAAACTTGGAGCATGAGTTCCTTGAACTCTTG
196 AAAGCAAGCAATGCTTCTTCCTCGGTCACATCTGAAACTTGGAGCATGAGTTCCTTGAACTCTTG
46494018 AACATACTCCCCCACTCTGCCCCGTTGCGATATACCTTGCAACTTTTCCCGAGCTTCTTCCTCGG
261 AACATACTCCCCCACTCTGCCCCGTTGCGATATACCTTGCAACTTTTCCCGAGCTTCTTCCTCGG
46494083 CAAACTCTGGGTAAAACTGTCCCTTCAATTCGCATTGGAACTCTTGCCACGTCCCAATCTCACCT
326 CAAACTCTGGGTAAAACTGTCCCTTCAATTCGCATTGGAACTCTTGCCACGTCCCAATCTCACCT
46494148 TGCCTTTTATCTGTGGTCCTACCTTGCCACCATAAAAGCGCAATGTCAGTAAGAAACATTGAAGC
391 TGCCTTTTATCTGTGGTCCTACCTTGCCACCATAAAAGCGCAATGTCAGTAAGAAACATTGAAGC
46494213 AGTGTTTACCTTATCTGCATCATCCATGATGCCTTTGGCACGAAAGTAGTTTTTCATCCTCCACA
456 AGTGTTTACCTTATCTGCATCATCCATGATGCCTTTGGCACGAAAGTAGTTTTTCATCCTCCACA
46494278 AGAAATTGTCCACATCGCATGCAGACCTTGTTCCCACAAACTCTTTCGGCTTCGGGACATCCTCG
521 AGAAATTGTCCACATCGCATGCAGACCTTGTTCCCACAAACTCTTTCGGCTTCGGGACATCCTCG
46494343 TTACTGAGTGCTGCATTTGCCA
586 TTACTGAGTGCTGCATTTGCCA
46494365 TCTTTACCACTATTGTCGCCGTTGCCATTGCCATCAACAATATCTTCCTTGTGATCCATTTCACA
1 TCTTTACCACTATTGTCGCCGTTGCCATTGCCATCAACAATATCTTCCTTGTGATCCATTTCACA
46494430 TACGCCGCTTATATCGGACTTGGAAGACCCAAGCTTGACCACGGACTCAACTACCGTCATGGCTT
66 TACGCCGCTTATATCGGACTTGGAAGACCCAAGCTTGACCACGGACTCAACTACCGTCATGGCTT
46494495 CCGACAGCTTTTGGACACCTCTTTGTTCCACCTCCTGTCTGACCCACGGCTTCAATCCATTCTGT
131 CCGACAGCTTTTGGACACCTCTTTGTTCCACCTCCTGTCTGACCCACGGCTTCAATCCATTCTGT
46494560 AAAGCAAGCAATGCTTCTTCCTCGGTCACATCTGAAACTTGGAGCATGAGTTCCTTGAACTCTTG
196 AAAGCAAGCAATGCTTCTTCCTCGGTCACATCTGAAACTTGGAGCATGAGTTCCTTGAACTCTTG
46494625 AACATACTCCCCCACTCTGCCCCGTTGCGATATACCTTGCAACTTTTCCCGAGCTTCTTCCTCGG
261 AACATACTCCCCCACTCTGCCCCGTTGCGATATACCTTGCAACTTTTCCCGAGCTTCTTCCTCGG
46494690 CAAACTCTGGGTAAAACTGTCCCTTCAATTCGCATTGGAACTCTTGCCACGTCCCAATCTCACCT
326 CAAACTCTGGGTAAAACTGTCCCTTCAATTCGCATTGGAACTCTTGCCACGTCCCAATCTCACCT
46494755 TGCCTTTTATCTGTGGTCCTACCTTGCCACCATAAAAGCGCAATGTCAGTAAGAAACATTGAAGC
391 TGCCTTTTATCTGTGGTCCTACCTTGCCACCATAAAAGCGCAATGTCAGTAAGAAACATTGAAGC
46494820 AGTGTTTACCTTATCTGCATCATCCATGATGCCTTTGGCACGAAAGTAGTTTTTCATCCTCCACA
456 AGTGTTTACCTTATCTGCATCATCCATGATGCCTTTGGCACGAAAGTAGTTTTTCATCCTCCACA
46494885 AGAAATTGTCCACATCGCATGCAGACCTTGTTCCCACAAACTCTTTCGGCTTCGGGACATCCTCG
521 AGAAATTGTCCACATCGCATGCAGACCTTGTTCCCACAAACTCTTTCGGCTTCGGGACATCCTCG
46494950 TTACTGAGTGCTGCATTTGCCA
586 TTACTGAGTGCTGCATTTGCCA
46494972 CTCCATTCCC
Statistics
Matches: 606, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
607 606 1.00
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.30
Consensus pattern (607 bp):
TCTTTACCACTATTGTCGCCGTTGCCATTGCCATCAACAATATCTTCCTTGTGATCCATTTCACA
TACGCCGCTTATATCGGACTTGGAAGACCCAAGCTTGACCACGGACTCAACTACCGTCATGGCTT
CCGACAGCTTTTGGACACCTCTTTGTTCCACCTCCTGTCTGACCCACGGCTTCAATCCATTCTGT
AAAGCAAGCAATGCTTCTTCCTCGGTCACATCTGAAACTTGGAGCATGAGTTCCTTGAACTCTTG
AACATACTCCCCCACTCTGCCCCGTTGCGATATACCTTGCAACTTTTCCCGAGCTTCTTCCTCGG
CAAACTCTGGGTAAAACTGTCCCTTCAATTCGCATTGGAACTCTTGCCACGTCCCAATCTCACCT
TGCCTTTTATCTGTGGTCCTACCTTGCCACCATAAAAGCGCAATGTCAGTAAGAAACATTGAAGC
AGTGTTTACCTTATCTGCATCATCCATGATGCCTTTGGCACGAAAGTAGTTTTTCATCCTCCACA
AGAAATTGTCCACATCGCATGCAGACCTTGTTCCCACAAACTCTTTCGGCTTCGGGACATCCTCG
TTACTGAGTGCTGCATTTGCCA
Found at i:46502544 original size:17 final size:17
Alignment explanation
Indices: 46502522--46502554 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
46502512 ACTATGATTA
46502522 AATATTAGATTAAATTT
1 AATATTAGATTAAATTT
46502539 AATATTAGATTAAATT
1 AATATTAGATTAAATT
46502555 AAAATAATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (17 bp):
AATATTAGATTAAATTT
Found at i:46513659 original size:38 final size:38
Alignment explanation
Indices: 46513603--46513676 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
46513593 CACATTCTTG
*
46513603 ATCTGAAATAATAATTCCATTCAATTAACTAAATCCAC
1 ATCTAAAATAATAATTCCATTCAATTAACTAAATCCAC
46513641 ATCTAAAATAATAATTCCATTCAATTAACTAAATCC
1 ATCTAAAATAATAATTCCATTCAATTAACTAAATCC
46513677 CTTTTTATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.46, C:0.20, G:0.01, T:0.32
Consensus pattern (38 bp):
ATCTAAAATAATAATTCCATTCAATTAACTAAATCCAC
Found at i:46513873 original size:16 final size:17
Alignment explanation
Indices: 46513844--46513877 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
46513834 AAGTCCTTGA
*
46513844 AATTTTATCATTTAAAC
1 AATTTAATCATTTAAAC
46513861 AATTTAATC-TTTAAAC
1 AATTTAATCATTTAAAC
46513877 A
1 A
46513878 TTAAAATCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTTAATCATTTAAAC
Found at i:46515421 original size:21 final size:21
Alignment explanation
Indices: 46515374--46515424 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
46515364 TAGCGGAAAT
* **
46515374 AAACTTCTTCTCATTAGTGAC
1 AAACTTCTTCTCAATAGCAAC
* *
46515395 AGACTTCTTCTCAATGGCAAC
1 AAACTTCTTCTCAATAGCAAC
46515416 AAACTTCTT
1 AAACTTCTT
46515425 TTCCTCAGTG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.35
Consensus pattern (21 bp):
AAACTTCTTCTCAATAGCAAC
Found at i:46516455 original size:23 final size:23
Alignment explanation
Indices: 46516419--46516510 Score: 60
Period size: 23 Copynumber: 3.7 Consensus size: 23
46516409 TCCCAAAATT
46516419 GGATACATAT-TCACTTTCTTAAG
1 GGATACAT-TCTCACTTTCTTAAG
46516442 GGATACATTCTCACATTATCACTCTATCAG
1 GGATACATTCTCAC-TT-T--CT-TA--AG
** * *
46516472 GGAATATGTTCTCACTATCTTAAA
1 GG-ATACATTCTCACTTTCTTAAG
46516496 GGATACATTCTCACT
1 GGATACATTCTCACT
46516511 CCATCAAGGG
Statistics
Matches: 54, Mismatches: 6, Indels: 18
0.69 0.08 0.23
Matches are distributed among these distances:
22 1 0.02
23 23 0.43
24 5 0.09
25 1 0.02
26 2 0.04
27 4 0.07
28 2 0.04
29 1 0.02
30 5 0.09
31 10 0.19
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.36
Consensus pattern (23 bp):
GGATACATTCTCACTTTCTTAAG
Found at i:46521984 original size:16 final size:17
Alignment explanation
Indices: 46521963--46521994 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
46521953 AAATATGCAA
46521963 TCACATAA-TTCATATT
1 TCACATAACTTCATATT
46521979 TCACATAACTTCATAT
1 TCACATAACTTCATAT
46521995 CATCAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TCACATAACTTCATATT
Found at i:46522221 original size:43 final size:43
Alignment explanation
Indices: 46522155--46522311 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
46522145 GGCTCGTACA
46522155 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
** *
46522198 ATGCC-ACTGTCCCAGACAG-GGTCTTACA-CAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCACATATCG
* * * *
46522239 ATGCCAATGTCCCAGACATGGTCTTACACGT-ATACACA-AGTTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAT-CACATA-TCG
46522282 ATGCCAACGTCCCAGACGTGGTCTTACATG
1 ATGCCAACGTCCCAGACGTGGTCTTACATG
46522312 AAAATACATA
Statistics
Matches: 94, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
41 28 0.30
42 14 0.15
43 51 0.54
44 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
Found at i:46522296 original size:84 final size:84
Alignment explanation
Indices: 46522155--46522309 Score: 210
Period size: 84 Copynumber: 1.8 Consensus size: 84
46522145 GGCTCGTACA
* *
46522155 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAG-GG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCACTGTCCCAGAC-GTGG
46522219 TCTTACACAAATCAAATACG
65 TCTTACACAAATCAAATACG
* *
46522239 ATGCCAATGTCCCAGACATGGTCTTACACGT-ATACACA-AGTTGATGCCAAC-GTCCCAGACGT
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAT-CACATA-TCGATGCC-ACTGTCCCAGACGT
46522301 GGTCTTACA
63 GGTCTTACA
46522310 TGAAAATACA
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
83 4 0.06
84 57 0.90
85 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCACTGTCCCAGACGTGGT
CTTACACAAATCAAATACG
Found at i:46531257 original size:12 final size:12
Alignment explanation
Indices: 46531242--46531274 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
46531232 CAAGGTGTAT
*
46531242 AAGAAGGAAAGA
1 AAGAAGAAAAGA
46531254 AAGAAGAAAAGA
1 AAGAAGAAAAGA
46531266 AAGAA-AAAA
1 AAGAAGAAAA
46531275 ATGTAAAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAGAAGAAAAGA
Found at i:46532419 original size:759 final size:760
Alignment explanation
Indices: 46530666--46533105 Score: 3444
Period size: 772 Copynumber: 3.2 Consensus size: 760
46530656 ACCGCTGTAC
* * * * * *
46530666 GGCACTGGGTAGTTTCGAAAAATAGCCCCTGTTTCACGATTTAACTAGTTTCTAT-AGGGTTTTA
1 GGCACTAGGCAGTTTCGAAAAAAAGCCCCTATTTCACGATTTAACAAGTTTCTATCAGAGTTTTA
*
46530730 GAATCATTTTCACACACCTGATAGCGACATTAATCCACCACGTAGTCATACACTTAAAATCCTAC
66 GGATCATTTTCACACACCTGATAGCGACATTAATCCACCACGTAGTCATACACTTAAAATCCTAC
* *
46530795 AAACGGCACCAAAACCAATGATTACAACTTCGATTTAACACGAACATTACCACTTAAATT-TACT
131 AAACGACACCAAAACCAACGATTACAACTTCGATTTAACACGAACATTACCACTTAAATTCT-CT
* *
46530859 CTTTTCTCAAAGAAACAATCACTATATTCATAAACAAGTAGTTACCACAAACTTGCAGCAACTAC
195 CTTTTCTCAAAGAAACAGTCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCAGCAACTAC
* * *
46530924 TCCAAAACCTTAATTTGTCGGAAGGTTGTCTACCACCACGCACTCTTCTCCTATCCACAACAACC
260 TCCAAAACCTTAATTTGTCGGAAGGTTGTCTATCACCACGCGCTCTTCTCATATCCACAACAACC
* **
46530989 AGCCACAACACTATATAAATCATAAAATCATTAATCTACGGATTTTTTTTTTG-TTAAAACAACA
325 AGGCACAACACTATATCTATCATAAAATCATTAATCTACGGATTTTTTTTTTGCTTAAAACAACA
* * * * **
46531053 AAACCCCAACTTTATTAATAACTTATCTTTCACACAACTTACCAACACAATAAAGCCACCACGAG
390 AAA-CCCAACTTTATAAAAAACTAATCTTCCACACAACTTACCAACACAACCAAGCCACCACGAG
* *
46531118 GAAAAGAAAGAAACAAGCGAACAATTGAATAATAAG-AAGCCTCAACAGTGTTCTTACGCAACAA
454 GAAAAGAAAGAAACAAGCGAACAATAGAATCAT-AGCAAGCCTCAACAGTGTTCTTACGCAACAA
* *
46531182 AAGAAAGATTTTACAATTGGCACAATAACAAAAGAAGAAGTCAGCGTTGGCAAGGTGTATAAGAA
518 AAGAAAGATTTTACAATTGGCACAATAACAAAAGAAGGAGTCGGCGTTGGCAAGGTGT-T-----
*
46531247 GGAAAGAAAGAAGAAAAGAAAGAAAAAAATGTAAAACAAAATTGGAAGAAGGGAAAGAAACGTGC
577 --AAAG-AAG--G-AAAGAAAGAAAAAAATGTAAAACAAAATTGAAAGAAGGGAAAGAAACGTGC
* *
46531312 AACCAAAGAGAAGTTGGTTTGATGGTTGCCGAAAGAGAAAAATAATAGGGATTTGATTTAAAAAA
636 AACCAAAGAGAAGTTGGTTTGACGGTTGCTGAAAGAGAAAAATAATA-GGATTTGATTTAAAAAA
* * * *
46531377 ATAAAATTACACGGACGTGTCACACACACAATCTACCATACGGCCTGACACACGGCCGTGT
700 ATAAAATTACACGGTCGTGTGACGCACACAATCTACCACACGGCCTGACACACGGCCGTGT
*
46531438 GGCACTGGGCAGTTTC-AAAAAATAGCCCCTATTTCACGATTTAACAAGTTTCTATC-GAGTTTT
1 GGCACTAGGCAGTTTCGAAAAAA-AGCCCCTATTTCACGATTTAACAAGTTTCTATCAGAGTTTT
* * * ** *
46531501 AGGATCGTTTTCACACACCTGATAGCAACATTAATCCACCACGTCGTTGTACACGTAAAATCCTA
65 AGGATCATTTTCACACACCTGATAGCGACATTAATCCACCACGTAGTCATACACTTAAAATCCTA
* * * * *
46531566 CAAACAACACCAAAACTAACGATTAAAACTTCGATTTAACACGAACATTACCATTTAAATTCGCT
130 CAAACGACACCAAAACCAACGATTACAACTTCGATTTAACACGAACATTACCACTTAAATTCTCT
*
46531631 CTTTTCTCAAAGAAACAGTCCTTATATTCATAAACAAGTAGTTACCACAAACTTGCAGCAACTAC
195 CTTTTCTCAAAGAAACAGTCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCAGCAACTAC
* *
46531696 TCCAAAACCTTAAATTGTCGG-AGAGTTGTCTATCACCACGCGCTCTTCTCTTATCCACAACAAC
260 TCCAAAACCTTAATTTGTCGGAAG-GTTGTCTATCACCACGCGCTCTTCTCATATCCACAACAAC
*
46531760 CAGGCACAACACTATATCTATCATAAAATCATTAATCTACGTATTTTTTTTTTGCTTAAAACAAC
324 CAGGCACAACACTATATCTATCATAAAATCATTAATCTACGGATTTTTTTTTTGCTTAAAACAAC
* *
46531825 AAAACTCCAACCTTATAAAGAACTAATCTTCCA-ACAACTTACCAACACAACCAAGCCACCACGA
389 AAAAC-CCAACTTTATAAAAAACTAATCTTCCACACAACTTACCAACACAACCAAGCCACCACGA
* * *
46531889 GGAAAAGAAAGAAACAAGTGAACAACAGAATCATAGCAAGCCTCAACAGTGTTCTTACACAACAA
453 GGAAAAGAAAGAAACAAGCGAACAATAGAATCATAGCAAGCCTCAACAGTGTTCTTACGCAACAA
* *
46531954 AAGAAAGATTTTGCAATTGGCACAATAACAAAAGAAGGAGTCGGTGTTGGCAAGGT-TTAAAGAA
518 AAGAAAGATTTTACAATTGGCACAATAACAAAAGAAGGAGTCGGCGTTGGCAAGGTGTTAAAGAA
*
46532018 GGAAAGAAAGAAAAAAATGTAAAACAAAATTGAAAGAAGGGAAAGAAATGTGCAACCAAAGAGAA
583 GGAAAGAAAGAAAAAAATGTAAAACAAAATTGAAAGAAGGGAAAGAAACGTGCAACCAAAGAGAA
* * *
46532083 GTTGGTTTAACGGTTGCTGAAAGAGAAAAATAATAGGTATTTGATTTTAAAAAATAAAATTAGAC
648 GTTGGTTTGACGGTTGCTGAAAGAGAAAAATAATAGG-ATTTGATTTAAAAAAATAAAATTACAC
* * * *
46532148 GGTCGTGTGGCGCACACAATCTACAACACGGCCTGACACTCGACCGTGT
712 GGTCGTGTGACGCACACAATCTACCACACGGCCTGACACACGGCCGTGT
* * * * * **
46532197 GGCACTAGGCAGTTTTGAAAAAAAGACCATGTTTCACAATTTAATGAGTTTCTA-CAGAGTTTTA
1 GGCACTAGGCAGTTTCGAAAAAAAGCCCCTATTTCACGATTTAACAAGTTTCTATCAGAGTTTTA
** * *
46532261 GGATTGTTTTCACACACCTGATAGCGAGATTAATCCACCACGTAGTCGTACACTTAAAATCCTAC
66 GGATCATTTTCACACACCTGATAGCGACATTAATCCACCACGTAGTCATACACTTAAAATCCTAC
* * * * *
46532326 AAACGGCACCAAAACTAACGATTACAAC-TCTGATTAAACACGAACATTACCACTTACATTCTCA
131 AAACGACACCAAAACCAACGATTACAACTTC-GATTTAACACGAACATTACCACTTAAATTCTCT
* * * * * *
46532390 CTTTTCCCAAATAAATAGTCCCTATATTCATCAACTATTAGTTACCACAAACTTGCAGCAACTAC
195 CTTTTCTCAAAGAAACAGTCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCAGCAACTAC
*
46532455 TCCAAAACCTTAATTTGTCGGAAGGTTGTCTATCACCACGCGCTCTTCTCATATCCACAACAACT
260 TCCAAAACCTTAATTTGTCGGAAGGTTGTCTATCACCACGCGCTCTTCTCATATCCACAACAACC
* * * * *
46532520 A-GCTAGAACAGTATATCTATCATAAAATCATTAATCTATGGA---TTTTTCTACTTAAAACAAC
325 AGGC-ACAACACTATATCTATCATAAAATCATTAATCTACGGATTTTTTTTTTGCTTAAAACAAC
46532581 AAAACCCAAACTTTATAAAAAAACTAATCTTCCACACAACTTACCAACACAACCAAGCCACCACG
389 AAAACCC-AACTTTAT-AAAAAACTAATCTTCCACACAACTTACCAACACAACCAAGCCACCACG
** *
46532646 AGGAAAAGAAAGAATTAAGCGAACAATAGAATCATAACAAGCCTCAACAGTGTTCTTACGCAACA
452 AGGAAAAGAAAGAAACAAGCGAACAATAGAATCATAGCAAGCCTCAACAGTGTTCTTACGCAACA
* **
46532711 AAAGAAAGATTTTACAATTGGCACAATAAC--AA-AAGGATTCGGCGTTGGCAAGGTGAAAAAGA
517 AAAGAAAGATTTTACAATTGGCACAATAACAAAAGAAGGAGTCGGCGTTGGCAAGGTGTTAAAGA
* * * *
46532773 AGGAAAGAAAGAAAAAAATTTAAAACAAAATTGAAAGAAAGGAAAGAAACGTGCCAGCAAAGAGA
582 AGGAAAGAAAGAAAAAAATGTAAAACAAAATTGAAAGAAGGGAAAGAAACGTGCAACCAAAGAGA
* * * *
46532838 AGTTTGTTTGACAGTT-ATCGAAAGAGAAAAATAATAAGGATTTGATTTAAAAAAATAAAAGTAC
647 AGTTGGTTTGACGGTTGCT-GAAAGAGAAAAATAAT-AGGATTTGATTTAAAAAAATAAAATTAC
* *
46532902 ACGGTCGTGTGACGCACACAATCTACCACACGGCCTGACCCAGGGCCGTGT
710 ACGGTCGTGTGACGCACACAATCTACCACACGGCCTGACACACGGCCGTGT
* *
46532953 GGCACGAGGCAGTTTCGAAAAATAGCCCCTATTTCACGATTTAACAAGTTTCTATCA-AGTTTTA
1 GGCACTAGGCAGTTTCGAAAAAAAGCCCCTATTTCACGATTTAACAAGTTTCTATCAGAGTTTTA
* * * * *
46533017 AGATTATTTTCACACACCTGATAGCGAGATTAATCCACCACGAAGTTATACACTTAAAATCCTAC
66 GGATCATTTTCACACACCTGATAGCGACATTAATCCACCACGTAGTCATACACTTAAAATCCTAC
* *
46533082 AAATGACACCAAAACCAATGATTA
131 AAACGACACCAAAACCAACGATTA
46533106 AATGCTAAAA
Statistics
Matches: 1500, Mismatches: 148, Indels: 56
0.88 0.09 0.03
Matches are distributed among these distances:
755 23 0.02
756 324 0.22
757 21 0.01
758 125 0.08
759 470 0.31
760 9 0.01
762 3 0.00
763 4 0.00
770 1 0.00
771 10 0.01
772 474 0.32
773 36 0.02
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (760 bp):
GGCACTAGGCAGTTTCGAAAAAAAGCCCCTATTTCACGATTTAACAAGTTTCTATCAGAGTTTTA
GGATCATTTTCACACACCTGATAGCGACATTAATCCACCACGTAGTCATACACTTAAAATCCTAC
AAACGACACCAAAACCAACGATTACAACTTCGATTTAACACGAACATTACCACTTAAATTCTCTC
TTTTCTCAAAGAAACAGTCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCAGCAACTACT
CCAAAACCTTAATTTGTCGGAAGGTTGTCTATCACCACGCGCTCTTCTCATATCCACAACAACCA
GGCACAACACTATATCTATCATAAAATCATTAATCTACGGATTTTTTTTTTGCTTAAAACAACAA
AACCCAACTTTATAAAAAACTAATCTTCCACACAACTTACCAACACAACCAAGCCACCACGAGGA
AAAGAAAGAAACAAGCGAACAATAGAATCATAGCAAGCCTCAACAGTGTTCTTACGCAACAAAAG
AAAGATTTTACAATTGGCACAATAACAAAAGAAGGAGTCGGCGTTGGCAAGGTGTTAAAGAAGGA
AAGAAAGAAAAAAATGTAAAACAAAATTGAAAGAAGGGAAAGAAACGTGCAACCAAAGAGAAGTT
GGTTTGACGGTTGCTGAAAGAGAAAAATAATAGGATTTGATTTAAAAAAATAAAATTACACGGTC
GTGTGACGCACACAATCTACCACACGGCCTGACACACGGCCGTGT
Found at i:46533033 original size:756 final size:754
Alignment explanation
Indices: 46530676--46533105 Score: 3383
Period size: 759 Copynumber: 3.2 Consensus size: 754
46530666 GGCACTGGGT
* * *
46530676 AGTTTCGAAAAATAGCCCCTGTTTCACGATTTAACTAGTTTCTAT-AGGGTTTT-AGAATCATTT
1 AGTTTCGAAAAATAGCCCCTATTTCACGATTTAACAAGTTTCTATCAGAGTTTTAAG-ATCATTT
*
46530739 TCACACACCTGATAGCGACATTAATCCACCACGTAGTCATACACTTAAAATCCTACAAACGGCAC
65 TCACACACCTGATAGCGACATTAATCCACCACGTAGTCATACACTTAAAATCCTACAAACGACAC
*
46530804 CAAAACCAATGATTACAACTTCGATTTAACACGAACATTACCACTTAAATT-TACTCTTTTCTCA
130 CAAAACCAACGATTACAACTTCGATTTAACACGAACATTACCACTTAAATTCT-CTCTTTTCTCA
* *
46530868 AAGAAACAATCACTATATTCATAAACAAGTAGTTACCACAAACTTGCAGCAACTACTCCAAAACC
194 AAGAAACAGTCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCAGCAACTACTCCAAAACC
* * *
46530933 TTAATTTGTCGGAAGGTTGTCTACCACCACGCACTCTTCTCCTATCCACAACAACCAGCCACAAC
259 TTAATTTGTCGGAAGGTTGTCTATCACCACGCGCTCTTCTCATATCCACAACAACCAG-CACAAC
** **
46530998 ACTATATAAATCATAAAATCATTAATCTACGGATTTTTTTTTTGTTAAAACAACAAAACCCCAAC
323 ACTATATCTATCATAAAATCATTAATCTACGGA-TTTTTTTTACTTAAAACAACAAAA-CCCAAC
* * * * **
46531063 TTTATTAATAACTTATCTTTCACACAACTTACCAACACAATAAAGCCACCACGAGGAAAAGAAAG
386 TTTATAAAAAACTAATCTTCCACACAACTTACCAACACAACCAAGCCACCACGAGGAAAAGAAAG
* * *
46531128 AAACAAGCGAACAATTGAATAATAAGAAGCCTCAACAGTGTTCTTACGCAACAAAAGAAAGATTT
451 AAACAAGCGAACAATAGAATCATAACAAGCCTCAACAGTGTTCTTACGCAACAAAAGAAAGATTT
*
46531193 TACAATTGGCACAATAACAAAAGAAGAAGTCAGCGTTGGCAAGGTGTATAAGAAGGAAAGAAAGA
516 TACAATTGGCACAATAACAAAAG--G-AGTCGGCGTTGGCAA-G-G--T--GAA--AAAG-AAG-
*
46531258 AGAAAAGAAAGAAAAAAATGTAAAACAAAATTGGAAGAAGGGAAAGAAACGTGCAACCAAAGAGA
568 -G-AAAGAAAGAAAAAAATGTAAAACAAAATTGAAAGAAGGGAAAGAAACGTGCAACCAAAGAGA
* *
46531323 AGTTGGTTTGATGGTTGCCGAAAGAGAAAAATAATAGGGATTTGATTTAAAAAAATAAAATTACA
631 AGTTGGTTTGACGGTT-CCGAAAGAGAAAAATAATAAGGATTTGATTTAAAAAAATAAAATTACA
* * * *
46531388 CGGACGTGTCACACACACAATCTACCATACGGCCTGACACACGGCCGTGTGGCACTG-GGC
695 CGGTCGTGTGACGCACACAATCTACCACACGGCCTGACACACGGCCGTGTGGCAC-GAGGC
* * *
46531448 AGTTTCAAAAAATAGCCCCTATTTCACGATTTAACAAGTTTCTATC-GAGTTTTAGGATCGTTTT
1 AGTTTCGAAAAATAGCCCCTATTTCACGATTTAACAAGTTTCTATCAGAGTTTTAAGATCATTTT
* * ** * *
46531512 CACACACCTGATAGCAACATTAATCCACCACGTCGTTGTACACGTAAAATCCTACAAACAACACC
66 CACACACCTGATAGCGACATTAATCCACCACGTAGTCATACACTTAAAATCCTACAAACGACACC
* * * *
46531577 AAAACTAACGATTAAAACTTCGATTTAACACGAACATTACCATTTAAATTCGCTCTTTTCTCAAA
131 AAAACCAACGATTACAACTTCGATTTAACACGAACATTACCACTTAAATTCTCTCTTTTCTCAAA
*
46531642 GAAACAGTCCTTATATTCATAAACAAGTAGTTACCACAAACTTGCAGCAACTACTCCAAAACCTT
196 GAAACAGTCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCAGCAACTACTCCAAAACCTT
* *
46531707 AAATTGTCGG-AGAGTTGTCTATCACCACGCGCTCTTCTCTTATCCACAACAACCAGGCACAACA
261 AATTTGTCGGAAG-GTTGTCTATCACCACGCGCTCTTCTCATATCCACAACAACCA-GCACAACA
* *
46531771 CTATATCTATCATAAAATCATTAATCTACGTATTTTTTTTTTGCTTAAAACAACAAAACTCCAAC
324 CTATATCTATCATAAAATCATTAATCTACGGA--TTTTTTTTACTTAAAACAACAAAAC-CCAAC
* *
46531836 CTTATAAAGAACTAATCTTCCA-ACAACTTACCAACACAACCAAGCCACCACGAGGAAAAGAAAG
386 TTTATAAAAAACTAATCTTCCACACAACTTACCAACACAACCAAGCCACCACGAGGAAAAGAAAG
* * * *
46531900 AAACAAGTGAACAACAGAATCATAGCAAGCCTCAACAGTGTTCTTACACAACAAAAGAAAGATTT
451 AAACAAGCGAACAATAGAATCATAACAAGCCTCAACAGTGTTCTTACGCAACAAAAGAAAGATTT
* * **
46531965 TGCAATTGGCACAATAACAAAAGAAGGAGTCGGTGTTGGCAAGGT-TTAAAGAAGGAAAGAAAGA
516 TACAATTGGCACAATAAC--AA-AAGGAGTCGGCGTTGGCAAGGTGAAAAAGAAGGAAAGAAAGA
* *
46532029 AAAAAATGTAAAACAAAATTGAAAGAAGGGAAAGAAATGTGCAACCAAAGAGAAGTTGGTTTAAC
578 AAAAAATGTAAAACAAAATTGAAAGAAGGGAAAGAAACGTGCAACCAAAGAGAAGTTGGTTTGAC
* * * *
46532094 GGTTGCTGAAAGAGAAAAATAAT-AGGTATTTGATTTTAAAAAATAAAATTAGACGGTCGTGTGG
643 GGTT-CCGAAAGAGAAAAATAATAAGG-ATTTGATTTAAAAAAATAAAATTACACGGTCGTGTGA
* * * *
46532158 CGCACACAATCTACAACACGGCCTGACACTCGACCGTGTGGCACTAGGC
706 CGCACACAATCTACCACACGGCCTGACACACGGCCGTGTGGCACGAGGC
* * * * * * ** * **
46532207 AGTTTTGAAAAAAAGACCATGTTTCACAATTTAATGAGTTTCTA-CAGAGTTTTAGGATTGTTTT
1 AGTTTCGAAAAATAGCCCCTATTTCACGATTTAACAAGTTTCTATCAGAGTTTTAAGATCATTTT
* * *
46532271 CACACACCTGATAGCGAGATTAATCCACCACGTAGTCGTACACTTAAAATCCTACAAACGGCACC
66 CACACACCTGATAGCGACATTAATCCACCACGTAGTCATACACTTAAAATCCTACAAACGACACC
* * * * *
46532336 AAAACTAACGATTACAAC-TCTGATTAAACACGAACATTACCACTTACATTCTCACTTTTCCCAA
131 AAAACCAACGATTACAACTTC-GATTTAACACGAACATTACCACTTAAATTCTCTCTTTTCTCAA
* * * * *
46532400 ATAAATAGTCCCTATATTCATCAACTATTAGTTACCACAAACTTGCAGCAACTACTCCAAAACCT
195 AGAAACAGTCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCAGCAACTACTCCAAAACCT
* *
46532465 TAATTTGTCGGAAGGTTGTCTATCACCACGCGCTCTTCTCATATCCACAACAACTAGCTAGAACA
260 TAATTTGTCGGAAGGTTGTCTATCACCACGCGCTCTTCTCATATCCACAACAACCAGC-ACAACA
* * *
46532530 GTATATCTATCATAAAATCATTAATCTATGGA-TTTTTCTACTTAAAACAACAAAACCCAAACTT
324 CTATATCTATCATAAAATCATTAATCTACGGATTTTTTTTACTTAAAACAACAAAACCC-AACTT
46532594 TATAAAAAAACTAATCTTCCACACAACTTACCAACACAACCAAGCCACCACGAGGAAAAGAAAGA
388 TAT-AAAAAACTAATCTTCCACACAACTTACCAACACAACCAAGCCACCACGAGGAAAAGAAAGA
**
46532659 ATTAAGCGAACAATAGAATCATAACAAGCCTCAACAGTGTTCTTACGCAACAAAAGAAAGATTTT
452 AACAAGCGAACAATAGAATCATAACAAGCCTCAACAGTGTTCTTACGCAACAAAAGAAAGATTTT
*
46532724 ACAATTGGCACAATAACAAAAGGATTCGGCGTTGGCAAGGTGAAAAAGAAGGAAAGAAAGAAAAA
517 ACAATTGGCACAATAACAAAAGGAGTCGGCGTTGGCAAGGTGAAAAAGAAGGAAAGAAAGAAAAA
* * * * * *
46532789 AATTTAAAACAAAATTGAAAGAAAGGAAAGAAACGTGCCAGCAAAGAGAAGTTTGTTTGACAGTT
582 AATGTAAAACAAAATTGAAAGAAGGGAAAGAAACGTGCAACCAAAGAGAAGTTGGTTTGACGGTT
* *
46532854 ATCGAAAGAGAAAAATAATAAGGATTTGATTTAAAAAAATAAAAGTACACGGTCGTGTGACGCAC
647 -CCGAAAGAGAAAAATAATAAGGATTTGATTTAAAAAAATAAAATTACACGGTCGTGTGACGCAC
* *
46532919 ACAATCTACCACACGGCCTGACCCAGGGCCGTGTGGCACGAGGC
711 ACAATCTACCACACGGCCTGACACACGGCCGTGTGGCACGAGGC
*
46532963 AGTTTCGAAAAATAGCCCCTATTTCACGATTTAACAAGTTTCTATCA-AGTTTTAAGATTATTTT
1 AGTTTCGAAAAATAGCCCCTATTTCACGATTTAACAAGTTTCTATCAGAGTTTTAAGATCATTTT
* * * *
46533027 CACACACCTGATAGCGAGATTAATCCACCACGAAGTTATACACTTAAAATCCTACAAATGACACC
66 CACACACCTGATAGCGACATTAATCCACCACGTAGTCATACACTTAAAATCCTACAAACGACACC
*
46533092 AAAACCAATGATTA
131 AAAACCAACGATTA
46533106 AATGCTAAAA
Statistics
Matches: 1480, Mismatches: 156, Indels: 60
0.87 0.09 0.04
Matches are distributed among these distances:
755 22 0.01
756 324 0.22
757 21 0.01
758 125 0.08
759 473 0.32
760 3 0.00
762 3 0.00
763 4 0.00
768 1 0.00
770 1 0.00
771 3 0.00
772 447 0.30
773 48 0.03
774 2 0.00
775 3 0.00
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (754 bp):
AGTTTCGAAAAATAGCCCCTATTTCACGATTTAACAAGTTTCTATCAGAGTTTTAAGATCATTTT
CACACACCTGATAGCGACATTAATCCACCACGTAGTCATACACTTAAAATCCTACAAACGACACC
AAAACCAACGATTACAACTTCGATTTAACACGAACATTACCACTTAAATTCTCTCTTTTCTCAAA
GAAACAGTCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCAGCAACTACTCCAAAACCTT
AATTTGTCGGAAGGTTGTCTATCACCACGCGCTCTTCTCATATCCACAACAACCAGCACAACACT
ATATCTATCATAAAATCATTAATCTACGGATTTTTTTTACTTAAAACAACAAAACCCAACTTTAT
AAAAAACTAATCTTCCACACAACTTACCAACACAACCAAGCCACCACGAGGAAAAGAAAGAAACA
AGCGAACAATAGAATCATAACAAGCCTCAACAGTGTTCTTACGCAACAAAAGAAAGATTTTACAA
TTGGCACAATAACAAAAGGAGTCGGCGTTGGCAAGGTGAAAAAGAAGGAAAGAAAGAAAAAAATG
TAAAACAAAATTGAAAGAAGGGAAAGAAACGTGCAACCAAAGAGAAGTTGGTTTGACGGTTCCGA
AAGAGAAAAATAATAAGGATTTGATTTAAAAAAATAAAATTACACGGTCGTGTGACGCACACAAT
CTACCACACGGCCTGACACACGGCCGTGTGGCACGAGGC
Found at i:46541875 original size:41 final size:41
Alignment explanation
Indices: 46541818--46541912 Score: 172
Period size: 41 Copynumber: 2.3 Consensus size: 41
46541808 AAATAAAATT
*
46541818 ACACGGACGTGTGACACTAACAATCTAGAATACGGCCTGAC
1 ACACGGCCGTGTGACACTAACAATCTAGAATACGGCCTGAC
*
46541859 ACACGGCCGTGTGACACTAACAATCTAGAATATGGCCTGAC
1 ACACGGCCGTGTGACACTAACAATCTAGAATACGGCCTGAC
46541900 ACACGGCCGTGTG
1 ACACGGCCGTGTG
46541913 GCAGTGGGCA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.31, C:0.27, G:0.24, T:0.18
Consensus pattern (41 bp):
ACACGGCCGTGTGACACTAACAATCTAGAATACGGCCTGAC
Found at i:46543249 original size:12 final size:12
Alignment explanation
Indices: 46543232--46543265 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
46543222 GCTAGGTGAA
*
46543232 AAAGAAGGAAAG
1 AAAGAAGAAAAG
46543244 AAAGAAGAAAAG
1 AAAGAAGAAAAG
46543256 AAAGAA-AAAA
1 AAAGAAGAAAA
46543266 TTTAAAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 4 0.19
12 17 0.81
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAGAAGAAAAG
Found at i:46545707 original size:768 final size:764
Alignment explanation
Indices: 46543661--46548666 Score: 5736
Period size: 756 Copynumber: 6.6 Consensus size: 764
46543651 TTGCTTTTCC
* * * * *
46543661 TATCCACAACAACTAGCCACTACACTATATCAATCCTAAAATCGTTAATCTACGAATTATTT-TG
1 TATCCACAACAACCAGCCACAACACTATATCAATCATAAAATCATTAATCTACGAATT-TTTCTA
* * *
46543725 CTTAAAATAAAAAAACCCCAACCTTATAAAGAACTAATC-TCCA-ACAAACCTTACCACCACAAC
65 CTTAAAACAACAAAACCCCAACCTTATAAAGAACTAATCTTCCACAC-AA-CTTACCAACACAAC
*
46543788 CAAGCCACCACGAGGAACAGAAAG----AA--G-----C--AA-CATAACAAGCCTCAACAGTGT
128 CAAGCCACCACGAGGAAAAGAAAGAAACAAGCGAACAACAGAATCATAACAAGCCTCAACAGTGT
* * *
46543839 TCTTACGCAACAAAAGAAAGATTTTGCAATTGGCACAATAACAAAAGAAGGTGTTGGCGTT-GCA
193 TCTTACGCAACAAAAGAAAGATTTT-CAATTGGCACAATAACAAAAGAAGGAGTCGACGTTGGCA
* *
46543903 AGGCG--AAA-AA-GAAAGAA-AGAAAG-A-AAAAAA--TAAAACAAATTTGAAAGAAGGGAAAG
257 AGGTGAAAAAGAAGGAAAAAAGAGAAAGAAGAAAAAATGTAAAACAAATTTGAAAGAAGGGAAAG
* * *
46543959 AAACGTGCAACCAAAGAGAAGTTGGTTTGACGGTTGCCGAATGATAAAAATAATAGGGATATGAT
322 AAACGTGCAACCAAAGAGAAGTTGGTTTGACGGTTGCCGAAAGAGAAAAATAATAGGGATTTGAT
* ** * * * *
46544024 TTTAAAAAATAAAATTAAACAGCCAAGTGGCACACAAAATCTACCACACGG--TCAGACATGCTG
387 TTTAAAAAATAAAATTACACAGCCGTGTGACACACACAATCTACCACACGGCCTGACACATG--G
* * * ** * * *
46544087 CTGTGTCGCA-TAGGGCAGTTTTGAAAACCAACCCCTGTTTCACGACTTAACGAGTTTCTCTCGA
450 CCGTGTGGCACT-GGGCAGTTTAGAAAAATAGCCCCTGTTTCACGATTTAACGAGTTTCTATCGA
** * * * *
46544151 GTTTTAGGATTGTTTTCTTACACATGATAGCGAGATTAATCCACCACGAAGTCATACACTTAAAA
514 GTTTTAGGATTGTTTTCACACACCTGATAGCGACATTAATCCACCACGCAGTCGTACACTTAAAA
* * * *
46544216 TCCTACAAA-TGACACCAAAACCAACGATTACAACTTCAATTTAAACATGAATATTACCACTTAA
579 TCCTACAAACAG-CACCAAAACCAACGATTACAACTTCGATTT-AACACGAACATTACCACTTAA
* * * *
46544280 ATTCGCTCTTTTCTCAAAGAAA-AAGACCTTATATTCACAAATAAGTAGTTACCAC-AACTTGCA
642 ATTCGCTCTTTTCTCAAAGAAACAA-TCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCA
* * * * *
46544343 GCAACTACTCCAAAACCTTAATTT-CTCGA-AGGATTGTCTATCACCATGCGTTCTTCTCC
706 ACAACTACTCCAAAACCTTAATTTGTTAGAGA-G-TTGTCTATCACCATGCGCTCTTCTCA
* * *
46544402 TATCCAGAACAACCAGCCACAACACTATATCAATCATAAAATCATTAATCTAC-AATTTTTTTCC
1 TATCCACAACAACCAGCCACAACACTATATCAATCATAAAATCATTAATCTACGAATTTTTCTAC
* *
46544466 TTAAAACAACAAAACCCCAACCTTATAAAAAAACTAATCTTCCATACAACTTACCAACACAACCA
66 TTAAAACAACAAAACCCCAACCTTAT-AAAGAACTAATCTTCCACACAACTTACCAACACAACCA
* * * *
46544531 GGCCACCACGAGGAAAAGAAAGAAATAAGCGAACAACAGAATCATAAAAAGCCTCAACAGTGATC
130 AGCCACCACGAGGAAAAGAAAGAAACAAGCGAACAACAGAATCATAACAAGCCTCAACAGTGTTC
** *
46544596 TTACAAAACAAAAGAAAGATTTTGCAATTGGCACAACAACAAAAGAAGGAGTCGACGTTGGCAAG
195 TTACGCAACAAAAGAAAGATTTT-CAATTGGCACAATAACAAAAGAAGGAGTCGACGTTGGCAAG
** *
46544661 GTGAAAAAGAAGGAAATAAAGAAGAAAAGAAAGAAAAATATGTAAAACAAAAAT-AAAGGAAGTG
259 GTGAAAAAGAAGGAAA-AAAG-AG-AAAG-AAGAAAAA-ATGTAAAACAAATTTGAAA-GAAGGG
* * *
46544725 AAAGAAACGTTCAACCAAAGAGAAGTTGGTTTAACGGTTGTCGAAAGAGAAAAATAATAGGGATT
318 AAAGAAACGTGCAACCAAAGAGAAGTTGGTTTGACGGTTGCCGAAAGAGAAAAATAATAGGGATT
* * * * *
46544790 TGATTTTAAAAAATAAAATCACACAGCCCTGTGACACATACAATCTACCATACGGCCTGACACAC
383 TGATTTTAAAAAATAAAATTACACAGCCGTGTGACACACACAATCTACCACACGGCCTGACACAT
* * * * *
46544855 GGCCGTGTGCCACTGGGTAGTTTCA-AAAAATAGCCTCTGTTTCATGATTTAACGAGTTTTTATC
448 GGCCGTGTGGCACTGGGCAGTTT-AGAAAAATAGCCCCTGTTTCACGATTTAACGAGTTTCTATC
* * *
46544919 GAGTTTTAGGATTGTTTTCACACACCTGATAGCAACATCAATCCACCACGCAGTCATACACTTAA
512 GAGTTTTAGGATTGTTTTCACACACCTGATAGCGACATTAATCCACCACGCAGTCGTACACTTAA
** * * * * **
46544984 AATAATAAAAAACAGCCCCAAAACCAACGATTAGACCTTCGATTTAACACGAATGTTACCACTTA
577 AATCCT-ACAAACAGCACCAAAACCAACGATTACAACTTCGATTTAACACGAACATTACCACTTA
* *
46545049 AATTCGCTCTTTTCTCAGAGAAGCAATCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCA
641 AATTCGCTCTTTTCTCAAAGAAACAATCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCA
* * *
46545114 ACAACTACTCCAAAACGTTAATTTGTTAGAGAGTTGTCTATCACTATGCACTCTTCTCA
706 ACAACTACTCCAAAACCTTAATTTGTTAGAGAGTTGTCTATCACCATGCGCTCTTCTCA
* * * *
46545173 TATCCACAACAATCAGCCACTAA-GCTATATCTATCATAAAATCATTAATCTACGGATTTTTCTA
1 TATCCACAACAACCAGCCAC-AACACTATATCAATCATAAAATCATTAATCTACGAATTTTTCTA
* *
46545237 CTTAAAA-AACAAAACCCCAACCTTATAAAGAACTAATATTGCACACAACTTACCAACACAACCA
65 CTTAAAACAACAAAACCCCAACCTTATAAAGAACTAATCTTCCACACAACTTACCAACACAACCA
* * * *
46545301 AGCCA-CATGAGGAAAAGAAAGAAACAAGCAAACAACAAAATCATAACAAGCCTCAATAGTGTTC
130 AGCCACCACGAGGAAAAGAAAGAAACAAGCGAACAACAGAATCATAACAAGCCTCAACAGTGTTC
*
46545365 TTACGCAACAAAAGAAAGATTTCTCAATTGG-ATCAATAACAAAAGAAGGAGCCGACGTTGGCAA
195 TTACGCAACAAAAGAAAGATTT-TCAATTGGCA-CAATAACAAAAGAAGGAGTCGACGTTGGCAA
*
46545429 GGTGAAAAAGAAGGGGAAAAAAGAGGAAAAGAAGGAAAAATGTAAAACAAATTTGAAAGAAGGGA
258 GGTGAAAAAGAA--GGAAAAAAGA-G-AAAGAAGAAAAAATGTAAAACAAATTTGAAAGAAGGGA
* *
46545494 AAGAAACGTGCAACCGAAGAGAAGTTGGTTTGACGGTTGCTGAAAGAGAAAAATAATAGGGATTT
319 AAGAAACGTGCAACCAAAGAGAAGTTGGTTTGACGGTTGCCGAAAGAGAAAAATAATAGGGATTT
* * * * ** * * **
46545559 GATTTTAGAAATTAAAATTTCACGGTTGTGTGTCCCACACAATCTACCACATAGCCTGACACATG
384 GATTTTAAAAAATAAAATTACACAGCCGTGTGACACACACAATCTACCACACGGCCTGACACATG
* * * * * * * *
46545624 GCCTTGTGGCACTTGGTAGTTTAGTAAAATAGCACATGTTTCACGATGTAACGAATTTCTATCGA
449 GCCGTGTGGCACTGGGCAGTTTAGAAAAATAGCCCCTGTTTCACGATTTAACGAGTTTCTATCGA
* * *
46545689 GTTTTAGGATTGTTTTCACACACCTGATAGTGACATTAATCCACCACGCATTTGTACACTTAAAA
514 GTTTTAGGATTGTTTTCACACACCTGATAGCGACATTAATCCACCACGCAGTCGTACACTTAAAA
* * * * *
46545754 TCCTACAAACGGCACCAAAACCAACGATTACAACTTCAATTTAACACGAACATTACGACTTACAG
579 TCCTACAAACAGCACCAAAACCAACGATTACAACTTCGATTTAACACGAACATTACCACTTAAAT
* * * **
46545819 TCGCTCTTTTCTCAAAGAAACAGTCCCTATGTTCATAAACAAGTAGTTACCACAAACTTACTGCA
644 TCGCTCTTTTCTCAAAGAAACAATCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCAACA
* * * * * * * *
46545884 ACTACTCCAAAACTTTAATTT-TTCGGAGGGTTGTCTACCACCACGTGCACTTCTCC
709 ACTACTCCAAAACCTTAATTTGTT-AGAGAGTTGTCTATCACCATGCGCTCTTCTCA
* * * *
46545940 TATCCACAACAACCAACCACAACACTATATCTATCATAAAATCATTAATCTAC-AGATTTTTTTG
1 TATCCACAACAACCAGCCACAACACTATATCAATCATAAAATCATTAATCTACGA-ATTTTTCTA
* * * *
46546004 CTTAAAACAACAAAACTCCAACATTATAAAGAACTAATCTTCCACATAACTTGCCAA-AGCAA-C
65 CTTAAAACAACAAAACCCCAACCTTATAAAGAACTAATCTTCCACACAACTTACCAACA-CAACC
* * *
46546067 AAGGCCACCACCAGGAAAAGAAAGAAACAAGTGAACAACAGAATCATAACAAGCCTCAATAGTGT
129 AA-GCCACCACGAGGAAAAGAAAGAAACAAGCGAACAACAGAATCATAACAAGCCTCAACAGTGT
* * *
46546132 TCTTAAGCAACAAGAGAAAGATTTTACAATTGGCACAATAAC--AA-AAGGAGTC-AGCATTGGC
193 TCTTACGCAACAAAAGAAAGATTTT-CAATTGGCACAATAACAAAAGAAGGAGTCGA-CGTTGGC
* * *
46546193 AAGGCGAAAAAGAAGGAAAGAAAGAAGAAAAAAAGAAAAAAATGTAAAAC-AATATTGAAAGAAC
256 AAGGTGAAAAAGAAGGAAA-AAAG-AG-AAAGAAG-AAAAAATGTAAAACAAAT-TTGAAAGAAG
46546257 GGAAAGAAACGTGC-ACCTAAAGAGAAGTTGGTTTGACGGTTGCCGAAAGAGAAAAATAATAGGG
316 GGAAAGAAACGTGCAACC-AAAGAGAAGTTGGTTTGACGGTTGCCGAAAGAGAAAAATAATAGGG
* * * * * *
46546321 ATTTGATTTAAAAAAATAAAGTTACATAGCCGTGTGACACATACAATCTACCAAACGGCTTGACA
380 ATTTGATTTTAAAAAATAAAATTACACAGCCGTGTGACACACACAATCTACCACACGGCCTGACA
* *
46546386 C-TCGGCCGTATGGCACTGGGCAGTTTCA-AAAAATA-CCCCTATTTCA-GATTTAACGAGTTTC
445 CAT-GGCCGTGTGGCACTGGGCAGTTT-AGAAAAATAGCCCCTGTTTCACGATTTAACGAGTTTC
* * * * *
46546447 TATCGAGTTTTAGGATTCTTTTCACACACCTAATAGTGACATTAATCCACCATGCAGTCGTACAT
508 TATCGAGTTTTAGGATTGTTTTCACACACCTGATAGCGACATTAATCCACCACGCAGTCGTACAC
* * * * * *
46546512 TTAAAATCCT--------CACCAAAACAAACGATTACAACTTTGGTTTAACATGAACATTTCCAT
573 TTAAAATCCTACAAACAGCACCAAAACCAACGATTACAACTTCGATTTAACACGAACATTACCAC
** * * * * * * * *
46546569 TTAAATTTTCTCTTTTCTCAGAGAAAGAGTCCTTTTATTCATAAA-ATTGTAGTTATCACAAAAT
638 TTAAATTCGCTCTTTTCTCAAAGAAACAATCCCTATATTCATAAACA-AGTAGTTACCACAAACT
* * *
46546633 TGCAACAACTACTCCAAAACCTTAATTTGTTGGAGAGTTTTCTATCACCACGCGCTCTTCTCA
702 TGCAACAACTACTCCAAAACCTTAATTTGTTAGAGAGTTGTCTATCACCATGCGCTCTTCTCA
* *
46546696 AATCCACAACAACCAACCACAACACTATATCAATCATAAAATCATTAATCTAC-ATATTTTTCTA
1 TATCCACAACAACCAGCCACAACACTATATCAATCATAAAATCATTAATCTACGA-ATTTTTCTA
* *
46546760 CTTAAAACAACAAAACCCCAACCTTATAAAGAACTAAACTTCCA-ACAACTTAACAACACAACCA
65 CTTAAAACAACAAAACCCCAACCTTATAAAGAACTAATCTTCCACACAACTTACCAACACAACCA
* * *
46546824 AGGCACCATGAGGAAAAGAAAGAAACAAGCGAACAACAGAATCATAACAAGCCTCAACAATGTTC
130 AGCCACCACGAGGAAAAGAAAGAAACAAGCGAACAACAGAATCATAACAAGCCTCAACAGTGTTC
* * * * * **
46546889 TTACACAAAAAAAGAAAGATTTTTCTATTTGAACAATAACAAAAGAAGGAGTCGACGTTGGCTGG
195 TTACGCAACAAAAGAAAGA-TTTTCAATTGGCACAATAACAAAAGAAGGAGTCGACGTTGGCAAG
* * * *
46546954 GTG-AAAACAAGGAAAGAAAGAATGAAAGAAGAAAAAAAATATAAAACAAACTTGAAAGAAGTGA
259 GTGAAAAAGAAGGAAA-AAAG-A-GAAAGAAG--AAAAAATGTAAAACAAATTTGAAAGAAGGGA
* *
46547018 AAGAAACGTGCAACCAAAGAGAAGTTGGTTTGACGGTTGCCGAAATAGAAAAATAATAGGAATTT
319 AAGAAACGTGCAACCAAAGAGAAGTTGGTTTGACGGTTGCCGAAAGAGAAAAATAATAGGGATTT
* * * * *** *
46547083 GATATTAAAAAATAAAATCACAC-GATCATGTGGTGCACACAATCTACCACACGGCCTAACACAC
384 GATTTTAAAAAATAAAATTACACAG-CCGTGTGACACACACAATCTACCACACGGCCTGACACA-
* * ** * * *
46547147 T-ACTGTGTGGCACTAGGTAAG-TTCGAAAAATAGCCCATGTTTCACGATTTAACGAGTTTCTAC
447 TGGCCGTGTGGCACT-GGGCAGTTTAGAAAAATAGCCCCTGTTTCACGATTTAACGAGTTTCTAT
* * * * *
46547210 CGAGTTTTAAGATCGTTTTAACACACCTGATAGCGAGATTAATCCACCATGCAGTCGTACACTTA
511 CGAGTTTTAGGATTGTTTTCACACACCTGATAGCGACATTAATCCACCACGCAGTCGTACACTTA
* * *
46547275 AAATCCTACAAACGGCACCAAAACCAACGATTACAAATTCGATTTAACATGAACATTACCACTTA
576 AAATCCTACAAACAGCACCAAAACCAACGATTACAACTTCGATTTAACACGAACATTACCACTTA
* * *
46547340 CATTCGCTCTTTTCTCAAAGAAACAATCCCTATATTCATAAACAAGTTGTTACTACAAACTTGCA
641 AATTCGCTCTTTTCTCAAAGAAACAATCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCA
* * * * * *
46547405 GCGACTACACCAAAACCTTAATTTG--ACGAAAGGTTGTCTATCACCACGCGCTCTTCTCC
706 ACAACTACTCCAAAACCTTAATTTGTTA-GAGA-GTTGTCTATCACCATGCGCTCTTCTCA
* * * *
46547464 TATCCACAACAACTAGCCACAACACTATATCAATCATAAAATCATTAATCTACGGATTTTTTTGC
1 TATCCACAACAACCAGCCACAACACTATATCAATCATAAAATCATTAATCTACGAATTTTTCTAC
*
46547529 TTAAAACAACAAAAACCCAACCTTATAAAGAACTAATCTTCCACACAACTTACCAACACAACCAA
66 TTAAAACAACAAAACCCCAACCTTATAAAGAACTAATCTTCCACACAACTTACCAACACAACCAA
* * * * *
46547594 GCCACCACGAGGAAAAGAAAGAAACAAGCAAACAATAAAATCATAATAAGCCCCAACAGTGTTCT
131 GCCACCACGAGGAAAAGAAAGAAACAAGCGAACAACAGAATCATAACAAGCCTCAACAGTGTTCT
* * * *
46547659 TACGTAACAAAAGAAATATTTCGCAATTGGCACAATAACAAAAGAAGGAGTCGACGTTGGCAAGA
196 TACGCAACAAAAGAAAGATTT-TCAATTGGCACAATAACAAAAGAAGGAGTCGACGTTGGCAAGG
* * * *
46547724 CGTATAAGAA-G----AA-A-ATA-AAGAAAAAATGTAAAACATAA-TTGAAAGAAGGGAAAG-A
260 TGAAAAAGAAGGAAAAAAGAGAAAGAAGAAAAAATGTAAAACA-AATTTGAAAGAAGGGAAAGAA
* * *
46547779 ACGTGCAACCAAAGAGAAGTTGGTTTGAAGGTTACAGAAAGAGAAAAATAATAGGGATTTGATTT
324 ACGTGCAACCAAAGAGAAGTTGGTTTGACGGTTGCCGAAAGAGAAAAATAATAGGGATTTGATTT
* * * * * **
46547844 TAAAAAATAAAATTGCACGGTCGTGTGACACACACAACCTACCAAACGGCCTGACACACAGCCGT
389 TAAAAAATAAAATTACACAGCCGTGTGACACACACAATCTACCACACGGCCTGACACATGGCCGT
* * * **
46547909 GTGGAACTGGGCAGTTTCGAAAAATAGCCCCTGTTTCACCATTTAATAAGTTTCTATCGAGTTTT
454 GTGGCACTGGGCAGTTTAGAAAAATAGCCCCTGTTTCACGATTTAACGAGTTTCTATCGAGTTTT
* ** * * *
46547974 AAGATCATTTTCACACACTTGATAGCGACATTAATCCACCACACAATCGTACACTTAAAATCCTA
519 AGGATTGTTTTCACACACCTGATAGCGACATTAATCCACCACGCAGTCGTACACTTAAAATCCTA
* * * **
46548039 CAATC-GACACCAAAACCAACGGTTACAACTTCGATTAAACACGAACATTACCACTTAAATTCAT
584 CAAACAG-CACCAAAACCAACGATTACAACTTCGATTTAACACGAACATTACCACTTAAATTCGC
* * * *
46548103 TCTTTTCTCAAATAAACAGTCCCTATATTCATAAACAAGTCGTTAACACAAACTTGCAACAACTA
648 TCTTTTCTCAAAGAAACAATCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCAACAACTA
* * *
46548168 CTCCAAAACCTTAATTTG-TCGAAGTGTTGTCTATCACCATGTGCTCTTCTCA
713 CTCCAAAACCTTAATTTGTTAG-AGAGTTGTCTATCACCATGCGCTCTTCTCA
**
46548220 TATCCACAACAATGAGCCACAACACTATATCAATCATAAAATCATTAATCTACGAATTTTTCTAC
1 TATCCACAACAACCAGCCACAACACTATATCAATCATAAAATCATTAATCTACGAATTTTTCTAC
* * *
46548285 TAAAAACAACAAAACCCCAACCTTATATA-AACATAATCTTCCACACAACTTACAAACACAACCA
66 TTAAAACAACAAAACCCCAACCTTATAAAGAAC-TAATCTTCCACACAACTTACCAACACAACCA
* * * *
46548349 AGCCACCACGAGGAAAATAAACAAACAAGCGAACAACAGAATCATAACATGCCTCAACAGTGTTT
130 AGCCACCACGAGGAAAAGAAAGAAACAAGCGAACAACAGAATCATAACAAGCCTCAACAGTGTTC
* * *
46548414 TTACACAACAAAAGAAAGA-TTTCGTAATTGGCACAATAAC--AA-AAGGAG-CGAACATTGGAA
195 TTACGCAACAAAAGAAAGATTTTC--AATTGGCACAATAACAAAAGAAGGAGTCG-ACGTTGGCA
* * ** *
46548474 AGGTGAAAAAGATGGAAAGAAAGAAAAAAGGAAAGACTAAAAAATGTAAAACAAAAATGACAGAA
257 AGGTGAAAAAGAAGGAAA-AAAG-AGAAA-G-AAG---AAAAAATGTAAAACAAATTTGAAAGAA
* * * * * *
46548539 AGAAAAGACAA-GTGCAACGAAAGAGAAGTTGGTTTGATGGTTTCCGAAAGA-AAAAATAATAGA
315 GGGAAAGA-AACGTGCAACCAAAGAGAAGTTGGTTTGACGGTTGCCGAAAGAGAAAAATAATAGG
* * ** * * *
46548602 GATTTGATTTAAAAAAAGAAAATTACATGGTCATGTGACACA-AAAATCTACCACACGGCCTGAC
379 GATTTGATTTTAAAAAATAAAATTACACAGCCGTGTGACACACACAATCTACCACACGGCCTGAC
46548666 A
444 A
46548667 GCAACTTTAA
Statistics
Matches: 3633, Mismatches: 498, Indels: 242
0.83 0.11 0.06
Matches are distributed among these distances:
739 3 0.00
740 30 0.01
741 94 0.03
742 6 0.00
743 2 0.00
745 2 0.00
747 1 0.00
752 3 0.00
753 21 0.01
754 6 0.00
755 183 0.05
756 831 0.23
757 60 0.02
758 172 0.05
759 26 0.01
760 88 0.02
761 3 0.00
762 3 0.00
763 2 0.00
764 93 0.03
765 31 0.01
766 187 0.05
767 250 0.07
768 613 0.17
769 388 0.11
770 352 0.10
771 155 0.04
772 27 0.01
773 1 0.00
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (764 bp):
TATCCACAACAACCAGCCACAACACTATATCAATCATAAAATCATTAATCTACGAATTTTTCTAC
TTAAAACAACAAAACCCCAACCTTATAAAGAACTAATCTTCCACACAACTTACCAACACAACCAA
GCCACCACGAGGAAAAGAAAGAAACAAGCGAACAACAGAATCATAACAAGCCTCAACAGTGTTCT
TACGCAACAAAAGAAAGATTTTCAATTGGCACAATAACAAAAGAAGGAGTCGACGTTGGCAAGGT
GAAAAAGAAGGAAAAAAGAGAAAGAAGAAAAAATGTAAAACAAATTTGAAAGAAGGGAAAGAAAC
GTGCAACCAAAGAGAAGTTGGTTTGACGGTTGCCGAAAGAGAAAAATAATAGGGATTTGATTTTA
AAAAATAAAATTACACAGCCGTGTGACACACACAATCTACCACACGGCCTGACACATGGCCGTGT
GGCACTGGGCAGTTTAGAAAAATAGCCCCTGTTTCACGATTTAACGAGTTTCTATCGAGTTTTAG
GATTGTTTTCACACACCTGATAGCGACATTAATCCACCACGCAGTCGTACACTTAAAATCCTACA
AACAGCACCAAAACCAACGATTACAACTTCGATTTAACACGAACATTACCACTTAAATTCGCTCT
TTTCTCAAAGAAACAATCCCTATATTCATAAACAAGTAGTTACCACAAACTTGCAACAACTACTC
CAAAACCTTAATTTGTTAGAGAGTTGTCTATCACCATGCGCTCTTCTCA
Found at i:46549117 original size:667 final size:670
Alignment explanation
Indices: 46548004--46549336 Score: 1783
Period size: 667 Copynumber: 2.0 Consensus size: 670
46547994 GATAGCGACA
* *
46548004 TTAATCCACCACACAATCGTACACTTAAAATCCTACAATCGACACCAAAACCAACGGTTACAACT
1 TTAATCCACCACACAATCGTACACTTAAAATCCTACAAACGACA-CAAAACCAACGATTACAACT
* * * *
46548069 TCGATTAAACACGAACATTACCACTTAAATTCATTCTTTTCTCAAATAAACAGTCCCTATATTCA
65 TCGATTAAACACAAACATTACCACATAAATTCACTCTTTTCTCAAATAAACAGTCCCTATATCCA
* ** *
46548134 TAAACAAGTCGTTAACACAAACTTGCAACAACTACTCCAAAACCTTAATTTGTCGAAGTGTTGTC
130 TAAACAAGTAGTTAACACAAACTTGCAACAACTACTCCAAAACCACAATTTGTCGAAGAGTTGTC
* ** ** *
46548199 TATCACCATGTGCTCTTCTCATATCCACAACAATGAGCCACAACACTATATCAATCATAAAATCA
195 TACCACCATGCACTCTTCTCATATCCACAACAACCAGCAACAACACTATATCAATCATAAAATCA
* *
46548264 TTAATCTACGAATTTTTCTACTAAAAACAACAAAACCCCAACCTTATATAAACATAATCTTCCAC
260 CTAATCTACGAATTTTTCTACTAAAAACAACAAAACCCCAACCTTATAAAAACATAATCTTCCAC
* * *
46548329 ACAACTTACAAACACAACCAAGCCACCACGAGGAAAATAAACAAACAAGCGAACAACAGAATCAT
325 AAAACTTACAAACACAACCAAGCCACCACGAAGAAAAGAAACAAACAAGCGAACAACAGAATCAT
* * * *
46548394 AACATGCCTCAACAGTGTTTTTACACAACAAAAGAAAGATTTCGTAATTGGCACAATAAC-AA-A
390 AAAAAGCCTCAACAGTGTTCTTACACAACAAAAGAAAGATTTCGCAATTGGCACAATAACAAAGA
** *
46548457 AGGAG-CGAACATTGGAAAGGTGAAAAAGATGGAAAGAAAGAA-AAAAGGAAAGACTAAAA-AAT
455 AGGAGTC-AACATTGGAAAGGCAAAAAAGAAGGAAAGAAAGAAGAAAA-GAAAGA--AAAACAAT
* * * * * *
46548519 GTAAAACAAAAATGACAGAAAGAAAAGACAA-GTGCAACGAAAGAGAAGTTGGTTTGATGGTTTC
516 GTAAAACAAAAATGAAAGAAAGAAAAGA-AACGTGCAACCAAAGAGAAGTTGCTTTGACGGATAC
* *
46548583 CGAAAGA-AAAAATAATAGAGATTTGATTTAAAAAAAG-AAAATTACATGGTCATGTGACACA-A
580 CGAAAGAGAAAAATAATAGAGATTTAATTT--AAAAAGTAAAATTACATGGCCATGTGACACACA
*
46548645 AAATCTACCACACGGCCTGACAGCAACT
643 AAATCTACCACACAGCCTGACAGCAACT
* * * * * * * *
46548673 TTAATCCACTACGCAGTCGTACATTTAAAATCCTACAAACGGCA-TAAACCTATGATTACAACTT
1 TTAATCCACCACACAATCGTACACTTAAAATCCTACAAACGACACAAAACCAACGATTACAACTT
* * *
46548737 CGATTTAACACAAACATTACCACATAAATTCGCTCTTTTCTCAAATAAATC-GTTCCTATATCCA
66 CGATTAAACACAAACATTACCACATAAATTCACTCTTTTCTCAAATAAA-CAGTCCCTATATCCA
* *
46548801 TAAACAAGTAGTTACCACAAACTTGCAACAACTACTCCAAAACCACAATTTGTCGGAGAGTTGTC
130 TAAACAAGTAGTTAACACAAACTTGCAACAACTACTCCAAAACCACAATTTGTCGAAGAGTTGTC
* * *
46548866 TACCACCATGCACTCTTCTCCTATCCACAACAACCATCAACAACACTATATCTATCATAAAATCA
195 TACCACCATGCACTCTTCTCATATCCACAACAACCAGCAACAACACTATATCAATCATAAAATCA
* *
46548931 CTAATCTAC-AGATTTTTCTGCTTAAAACAACAAAACCCCAACCTTATAAAGAAC-TAATCTTCC
260 CTAATCTACGA-ATTTTTCTACTAAAAACAACAAAACCCCAACCTTATAAA-AACATAATCTTCC
* * * * * *
46548994 ACAAAACTTGCCAACACAACCAAGCCACGATGAAGAAAAGAAAGAAGCAAGCGAACAACAGAATC
323 ACAAAACTTACAAACACAACCAAGCCACCACGAAGAAAAGAAACAAACAAGCGAACAACAGAATC
* * *
46549059 ATAAAAAGCCTCAACAGTGTTCTTACGCAACAAAAGAAATATTTTGCAATTGGCACAATAACAAA
388 ATAAAAAGCCTCAACAGTGTTCTTACACAACAAAAGAAAGATTTCGCAATTGGCACAATAAC-AA
* * *
46549124 AGAAGGAGTCAGCGTTGGCAAGGCAAAAAAGAAGGAAAGAAAGAAGAAAAGAAAGAAAAACAATG
452 AGAAGGAGTCAACATTGGAAAGGCAAAAAAGAAGGAAAGAAAGAAGAAAAGAAAGAAAAACAATG
* * *
46549189 TAAAACAAAATTGAAAGAAGGGAAAGAAACGTGCAACCAAAGAGAAGTTGCTTTGACGGATACCG
517 TAAAACAAAAATGAAAGAAAGAAAAGAAACGTGCAACCAAAGAGAAGTTGCTTTGACGGATACCG
* * * *
46549254 AAAGAGAAAAATAATAGGGATTTAATTTTAAAAGTAAAATTACATGGCCGTGTGACACACACAAT
582 AAAGAGAAAAATAATAGAGATTTAATTTAAAAAGTAAAATTACATGGCCATGTGACACACAAAAT
* *
46549319 TTACCATACAGCCTGACA
647 CTACCACACAGCCTGACA
46549337 CACGACCGTG
Statistics
Matches: 575, Mismatches: 76, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
666 1 0.00
667 350 0.61
668 15 0.03
669 124 0.22
670 80 0.14
671 5 0.01
ACGTcount: A:0.44, C:0.21, G:0.13, T:0.21
Consensus pattern (670 bp):
TTAATCCACCACACAATCGTACACTTAAAATCCTACAAACGACACAAAACCAACGATTACAACTT
CGATTAAACACAAACATTACCACATAAATTCACTCTTTTCTCAAATAAACAGTCCCTATATCCAT
AAACAAGTAGTTAACACAAACTTGCAACAACTACTCCAAAACCACAATTTGTCGAAGAGTTGTCT
ACCACCATGCACTCTTCTCATATCCACAACAACCAGCAACAACACTATATCAATCATAAAATCAC
TAATCTACGAATTTTTCTACTAAAAACAACAAAACCCCAACCTTATAAAAACATAATCTTCCACA
AAACTTACAAACACAACCAAGCCACCACGAAGAAAAGAAACAAACAAGCGAACAACAGAATCATA
AAAAGCCTCAACAGTGTTCTTACACAACAAAAGAAAGATTTCGCAATTGGCACAATAACAAAGAA
GGAGTCAACATTGGAAAGGCAAAAAAGAAGGAAAGAAAGAAGAAAAGAAAGAAAAACAATGTAAA
ACAAAAATGAAAGAAAGAAAAGAAACGTGCAACCAAAGAGAAGTTGCTTTGACGGATACCGAAAG
AGAAAAATAATAGAGATTTAATTTAAAAAGTAAAATTACATGGCCATGTGACACACAAAATCTAC
CACACAGCCTGACAGCAACT
Found at i:46549166 original size:12 final size:12
Alignment explanation
Indices: 46549151--46549180 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
46549141 GCAAGGCAAA
*
46549151 AAAGAAGGAAAG
1 AAAGAAGAAAAG
46549163 AAAGAAGAAAAG
1 AAAGAAGAAAAG
46549175 AAAGAA
1 AAAGAA
46549181 AAACAATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (12 bp):
AAAGAAGAAAAG
Found at i:46550439 original size:769 final size:763
Alignment explanation
Indices: 46548673--46550829 Score: 2856
Period size: 769 Copynumber: 2.8 Consensus size: 763
46548663 GACAGCAACT
* * ** * *
46548673 TTAATCCACTACGCAGTCGTACATTTAAAATCCTAC--AAACGGCATAAACCTATGATTACAACT
1 TTAATCCACCACGCAGTCGTACACTTAAAATCCTACAAAAACACCA-AAA-CAACGATTACAACT
* ** * * * *
46548736 TCGATTTAACACAAACATTACCACATAAATTCGCTCTTTTCTCAAATAAATC-GTTCCTATATCC
64 TCGATTTAACACGAACATTACCATTTAAATTCACTCTTTTCTCAAAGAAA-CAGTCCCTATATTC
* ** *
46548800 ATAAACAAGTAGTTACCACAAACTTGCAACAACTACTCCAAAACCACAATTTGTCGGAGAGTTGT
128 ATAAACAAGTAGTTACCACAAACTTGCAGCAACTACTCCAAAACCTTAATTTGTCAGAGAGTTGT
* * * * *
46548865 CTACCACCATGCACTCTTCTCCTATCCACAACAACCATCAACAACACTATATCTATCATAAAATC
193 CTATCACCACGCACTCTTCTCCTATCCACAACAACCAGCCACAACACTATATCAATCATAAAATC
* *
46548930 ACTAATCTACAGATTTTTCTGCTTAAAACAACAAAACCCCAACCTTATAAAGAACTAATCTTCCA
258 ATTAATCTACAGATTTTTTTGCTTAAAACAAC-AAACCCCAACCTTATAAAGAACTAATCTTCCA
* * * *
46548995 CAAAACTTGCCAACACAACCAAGCCACGATGAAGAAAAGAAAGAAGCAAGCGAACAACAGAATCA
322 CAAAACTTACCAACACAACCAAGCCACCA-GAAGAAAAGAAAGAAACAAGCGAACAATAGAATCA
* *
46549060 TAAAAAGCCTCAACAGTGTTCTTACGCAACAAAAGAAATATTTTGCAATTGGCACAATAACAAAA
386 TAACAAGCCTCAACAGTGTTCTTACGCAACAAAAGAAAGATTTTGCAATTGGCACAATAACAAAA
*
46549125 GAAGGAGTCAGCGTTGGCAAGGCAAAAAAGAAGGAAAGAAAGAAGAAAAGAAAGAAAAACAATGT
451 GAAGGAGTCAGTGTTGGCAAGGCAAAAAAGAAGGAAAGAAAGAAGAAAAG-AAGAAAAA-AATGT
* * * *
46549190 AAAACAAAATTGAAAGAAGGGAAAGAAACGTGCAACCAAAGAGAAGTTGCTTTGACGGATACCGA
514 AAAACAAAATTGAAAGAAGGGAAAG-AACATGCAACCAAAGAGAAGTTGGTTTGACGGTTGCCGA
* * * * * * *
46549255 AAGAGAAAAATAATAGGGATTTAATTTTAAAAGTAAAATTACATGGCCGTGTGACACACACAATT
578 AAGAGAAAAATAATAGGGATTTGATTTAAAAAATAAAACTAAACGGCCGTGTGACACACACAATC
* * * * * * *
46549320 TACCATACAGCCTGACACACGACCGTGTGGCATTGGGCAGTTTTGAAAAAAAGCCCTTGTTTCAC
643 TACCACACAGCCTGACACACGACCGTGTGGCACTAGGAAATTTTGAAAAAAAGCCCCTGTTTCAA
*
46549385 GATATAACGAGTTTCTATCAAGTTTTAGGATCGTTTTCACACACCTAATAGCGACA
708 GATATAACGAGTTTCTACCAAGTTTTAGGATCGTTTTCACACACCTAATAGCGACA
* * * * * * * *
46549441 TTAATCCACGACGTAGTCGTACACGTAAAATCCTACAAACAGCATCACAACTAACTATTAAAACT
1 TTAATCCACCACGCAGTCGTACACTTAAAATCCTACAAA-AACACCAAAAC-AACGATTACAACT
* * * *
46549506 TCAATTTAACACGAACATTACCATTTAAACTCACTATTTTCTCAAAGAAATAGTCCCTATATTCA
64 TCGATTTAACACGAACATTACCATTTAAATTCACTCTTTTCTCAAAGAAACAGTCCCTATATTCA
* * * *
46549571 TAAACAAGTAGTTACCACAAACTTGCAGCAACTACACCGAAACCTTAATTTGCCA-AAAGATTGT
129 TAAACAAGTAGTTACCACAAACTTGCAGCAACTACTCCAAAACCTTAATTTGTCAGAGAG-TTGT
* * *
46549635 CTATCACCTCACACTCTTCTCCTATCCATAACAACCAGCCACAACACTATATCAATCATAAAATC
193 CTATCACCACGCACTCTTCTCCTATCCACAACAACCAGCCACAACACTATATCAATCATAAAATC
*
46549700 ATTAATCTACAGATTTTTTTGCTTAAAACAACAATACCCCAACCTTATAAAGAACTAATCTTCCT
258 ATTAATCTACAGATTTTTTTGCTTAAAACAACAA-ACCCCAACCTTATAAAGAACTAATCTTCCA
* *
46549765 CACAACTTACCAACACAACCAAGCCACCACGAAGAAAAGAAAGAAACAAGCGAACAATTGAATCA
322 CAAAACTTACCAACACAACCAAGCCACCA-GAAGAAAAGAAAGAAACAAGCGAACAATAGAATCA
* *
46549830 TAACAAGCCTCAACAGTGTTCTTACGCAACAAAAGAAAGATTTTGCAATTGGCAGAATAACAACA
386 TAACAAGCCTCAACAGTGTTCTTACGCAACAAAAGAAAGATTTTGCAATTGGCACAATAACAAAA
* * *
46549895 GAAGGAGTCGGTGTTGGCAAGGCAAAAAATAAGGAAAGAAAGAAGAAAAGAACGAAAAAAATTTA
451 GAAGGAGTCAGTGTTGGCAAGGCAAAAAAGAAGGAAAGAAAGAAGAAAAGAA-GAAAAAAATGTA
* *
46549960 AAAGAAAATTGAAAGAAGGGAAAGAACATGCAACCAAAGAGAAGTTGGTTTGAAGGTTGCCGAAA
515 AAACAAAATTGAAAGAAGGGAAAGAACATGCAACCAAAGAGAAGTTGGTTTGACGGTTGCCGAAA
* * *
46550025 GAGAAAAATAATAGGGATTTGATTTAAAAAAATAAAACTAAACGGCCGTGTGGCGCACATAATCT
580 GAGAAAAATAATAGGGATTTGATTT-AAAAAATAAAACTAAACGGCCGTGTGACACACACAATCT
* * *
46550090 ACCACACGGCCTGACACACGGCTGTGTGGCACTAGGAAATTTTGAAAAACAA-CCCCTGTTTCAA
644 ACCACACAGCCTGACACACGACCGTGTGGCACTAGGAAATTTTGAAAAA-AAGCCCCTGTTTCAA
* * * * * *
46550154 TATTTAACGAGTTTCTACCGAGTTTTAGGATTGTTTTCACACACCTGACT-GCGAGA
708 GATATAACGAGTTTCTACCAAGTTTTAGGATCGTTTTCACACACCT-AATAGCGACA
*
46550210 TTAATCCACCAAGCAGTCGTACACTTAAAATCCTACAAATAACACCAAAATCAACGATTACAACT
1 TTAATCCACCACGCAGTCGTACACTTAAAATCCTACAAA-AACACCAAAA-CAACGATTACAACT
46550275 TCGATTTAACACGAACATTACCATTTAAATTCACTCTTTTCTCAAAGAAACAGTCCCTATATTCA
64 TCGATTTAACACGAACATTACCATTTAAATTCACTCTTTTCTCAAAGAAACAGTCCCTATATTCA
* * * * * **
46550340 TAAACAAGCAATTACCACAAACTTCCAGCAACTACTCCAAAAACTTAATTTTTCAGAG-GGCGTT
129 TAAACAAGTAGTTACCACAAACTTGCAGCAACTACTCCAAAACCTTAATTTGTCAGAGAGTTG-T
* * * * * *
46550404 CTATCACCACGCGCTCTTCTCTTATCCACAACAACCAGCCACAATACTGTATCGATCGTAAAATC
193 CTATCACCACGCACTCTTCTCCTATCCACAACAACCAGCCACAACACTATATCAATCATAAAATC
* *
46550469 ATTAATCTAC-GAACTTTTTCGCTTAAAACAACAAACCCCAACCTTATAAAGAACTAATCTTCCA
258 ATTAATCTACAG-ATTTTTTTGCTTAAAACAACAAACCCCAACCTTATAAAGAACTAATCTTCCA
* * * *
46550533 CATAACTTACCAACACAACCAAGCCACCATAAGGAGAAGAAAGAAACAAGCGAACAATAGAATCG
322 CAAAACTTACCAACACAACCAAGCCACCAGAA-GAAAAGAAAGAAACAAGCGAACAATAGAATCA
* * * * **
46550598 TAACAAGCCACAGCAGTGTTCTTATGCAACAAAAGAAAGATTTTGCAATGGGCACAATAGTAAAA
386 TAACAAGCCTCAACAGTGTTCTTACGCAACAAAAGAAAGATTTTGCAATTGGCACAATAACAAAA
* ** ** *
46550663 GAATGAGTCAGTGTTGGCAAGGTGAAAAAGAAGGAAAGAAAGTGGAAAAGAGAGAAACAAATGTA
451 GAAGGAGTCAGTGTTGGCAAGGCAAAAAAGAAGGAAAGAAAGAAGAAAAGA-AGAAAAAAATGTA
* * * * * *
46550728 AAACAAAATTGAAAGAAGGGAAAGAA-ATGTGTAGCTAAATAGAAGGTGGTTTGACGGTTGTCGA
515 AAACAAAATTGAAAGAAGGGAAAGAACA--TGCAACCAAAGAGAAGTTGGTTTGACGGTTGCCGA
*
46550792 AATAGAAAAATAATAGGGATTTGATTTAAAAAATAAAA
578 AAGAGAAAAATAATAGGGATTTGATTTAAAAAATAAAA
46550830 TAACAAATAA
Statistics
Matches: 1212, Mismatches: 158, Indels: 38
0.86 0.11 0.03
Matches are distributed among these distances:
767 3 0.00
768 327 0.27
769 467 0.39
770 411 0.34
771 4 0.00
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.23
Consensus pattern (763 bp):
TTAATCCACCACGCAGTCGTACACTTAAAATCCTACAAAAACACCAAAACAACGATTACAACTTC
GATTTAACACGAACATTACCATTTAAATTCACTCTTTTCTCAAAGAAACAGTCCCTATATTCATA
AACAAGTAGTTACCACAAACTTGCAGCAACTACTCCAAAACCTTAATTTGTCAGAGAGTTGTCTA
TCACCACGCACTCTTCTCCTATCCACAACAACCAGCCACAACACTATATCAATCATAAAATCATT
AATCTACAGATTTTTTTGCTTAAAACAACAAACCCCAACCTTATAAAGAACTAATCTTCCACAAA
ACTTACCAACACAACCAAGCCACCAGAAGAAAAGAAAGAAACAAGCGAACAATAGAATCATAACA
AGCCTCAACAGTGTTCTTACGCAACAAAAGAAAGATTTTGCAATTGGCACAATAACAAAAGAAGG
AGTCAGTGTTGGCAAGGCAAAAAAGAAGGAAAGAAAGAAGAAAAGAAGAAAAAAATGTAAAACAA
AATTGAAAGAAGGGAAAGAACATGCAACCAAAGAGAAGTTGGTTTGACGGTTGCCGAAAGAGAAA
AATAATAGGGATTTGATTTAAAAAATAAAACTAAACGGCCGTGTGACACACACAATCTACCACAC
AGCCTGACACACGACCGTGTGGCACTAGGAAATTTTGAAAAAAAGCCCCTGTTTCAAGATATAAC
GAGTTTCTACCAAGTTTTAGGATCGTTTTCACACACCTAATAGCGACA
Found at i:46558489 original size:12 final size:12
Alignment explanation
Indices: 46558472--46558503 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
46558462 CGACTAAGAG
*
46558472 CATTGGCTACCA
1 CATTGGCCACCA
46558484 CATTGGCCACCA
1 CATTGGCCACCA
46558496 CATTGGCC
1 CATTGGCC
46558504 TTACCAAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.22, C:0.38, G:0.19, T:0.22
Consensus pattern (12 bp):
CATTGGCCACCA
Found at i:46560389 original size:40 final size:40
Alignment explanation
Indices: 46560289--46560553 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
46560279 GCTCCTCGTT
* * * *
46560289 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
46560329 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
46560368 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
46560408 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
46560448 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
46560488 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
46560529 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
46560554 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:46560513 original size:80 final size:80
Alignment explanation
Indices: 46560256--46560553 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
46560246 AAATCACGTA
* ** * * *
46560256 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
46560318 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
46560334 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
46560397 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
46560414 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
46560478 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
46560494 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
46560554 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:46560562 original size:41 final size:41
Alignment explanation
Indices: 46560485--46560562 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
46560475 TTTGTATCTC
* * *
46560485 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
46560526 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
46560563 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:46576967 original size:18 final size:18
Alignment explanation
Indices: 46576923--46576967 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
46576913 GCAATAAGAA
46576923 AACGTTTTGAAATTGAAT
1 AACGTTTTGAAATTGAAT
*
46576941 AACGATTTGTAAA-TGAAT
1 AACGTTTTG-AAATTGAAT
*
46576959 AATGTTTTG
1 AACGTTTTG
46576968 GAAACGAACG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (18 bp):
AACGTTTTGAAATTGAAT
Found at i:46581136 original size:151 final size:151
Alignment explanation
Indices: 46580862--46581164 Score: 570
Period size: 151 Copynumber: 2.0 Consensus size: 151
46580852 ACGTTTCTGC
* *
46580862 AAGAGGACCAAACCGTCATAGACATGCAAGGAAGTCAAGAAGCAACAAGAATTACATTAGCACAT
1 AAGAGGACCAAACCGTCATAGACATGCAAGGAAGTCAAGAAGCAACAAGAATTACATGAGCACAC
*
46580927 ATGTAAAGTTAAACATTGTATGTATCAGGACTTTGAAGCCTTCTAAATCTTCATTCAAATTCAAA
66 ATGTAAAGCTAAACATTGTATGTATCAGGACTTTGAAGCCTTCTAAATCTTCATTCAAATTCAAA
*
46580992 TAGTAGACCATAGCATTTGTT
131 CAGTAGACCATAGCATTTGTT
46581013 AAGAGGACCAAACCGTCATAGACATGCAAGGAAGTCAAGAAGCAACAAGAATTACATGAGCACAC
1 AAGAGGACCAAACCGTCATAGACATGCAAGGAAGTCAAGAAGCAACAAGAATTACATGAGCACAC
46581078 ATGTAAAGCTAAACATTGTATGTATCAGGACTTTGAAGCCTTCTAAATCTTCATTCAAATTCAAA
66 ATGTAAAGCTAAACATTGTATGTATCAGGACTTTGAAGCCTTCTAAATCTTCATTCAAATTCAAA
46581143 CAGTAGACCATAGCATTTGTT
131 CAGTAGACCATAGCATTTGTT
46581164 A
1 A
46581165 GGTTTTGATT
Statistics
Matches: 148, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
151 148 1.00
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (151 bp):
AAGAGGACCAAACCGTCATAGACATGCAAGGAAGTCAAGAAGCAACAAGAATTACATGAGCACAC
ATGTAAAGCTAAACATTGTATGTATCAGGACTTTGAAGCCTTCTAAATCTTCATTCAAATTCAAA
CAGTAGACCATAGCATTTGTT
Found at i:46581193 original size:11 final size:11
Alignment explanation
Indices: 46581177--46581218 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
46581167 TTTTGATTCA
46581177 GATTCTGATTT
1 GATTCTGATTT
46581188 GATTCTGA-TT
1 GATTCTGATTT
**
46581198 G-TTGGGATTT
1 GATTCTGATTT
46581208 GATTCTGATTT
1 GATTCTGATTT
46581219 TTATTTCTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
9 4 0.16
10 6 0.24
11 15 0.60
ACGTcount: A:0.17, C:0.07, G:0.24, T:0.52
Consensus pattern (11 bp):
GATTCTGATTT
Found at i:46592155 original size:16 final size:17
Alignment explanation
Indices: 46592121--46592161 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
46592111 CCTATTCCCT
46592121 CCCAATTTAAAACCCAG
1 CCCAATTTAAAACCCAG
*
46592138 CCCAATTT-AAATCCAG
1 CCCAATTTAAAACCCAG
46592154 CCCAATTT
1 CCCAATTT
46592162 TCTCTTAGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 15 0.65
17 8 0.35
ACGTcount: A:0.37, C:0.34, G:0.05, T:0.24
Consensus pattern (17 bp):
CCCAATTTAAAACCCAG
Found at i:46592294 original size:15 final size:16
Alignment explanation
Indices: 46592262--46592300 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
46592252 TTCATTCCCT
46592262 CCCAATTTAAACCCAG
1 CCCAATTTAAACCCAG
*
46592278 CCCAATTT-AATCCAG
1 CCCAATTTAAACCCAG
46592293 CCCAATTT
1 CCCAATTT
46592301 TCACAACACC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.33, C:0.36, G:0.05, T:0.26
Consensus pattern (16 bp):
CCCAATTTAAACCCAG
Found at i:46596532 original size:17 final size:17
Alignment explanation
Indices: 46596510--46596607 Score: 56
Period size: 17 Copynumber: 5.4 Consensus size: 17
46596500 AATTCAAGAC
46596510 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
*
46596527 TTATGT-A-GTTAATTCAAGA
1 TTATGTAATGTT--TT-TA-A
46596546 CTTATGTAATGTTTTTAA
1 -TTATGTAATGTTTTTAA
* ***
46596564 TTATGTAGTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
*
46596583 CTTATGTAATATTTTTAA
1 -TTATGTAATGTTTTTAA
46596601 TTATGTA
1 TTATGTA
46596608 GCAATTTAAA
Statistics
Matches: 60, Mismatches: 11, Indels: 20
0.66 0.12 0.22
Matches are distributed among these distances:
15 3 0.05
16 1 0.02
17 24 0.40
18 6 0.10
19 6 0.10
20 16 0.27
21 1 0.02
22 3 0.05
ACGTcount: A:0.33, C:0.04, G:0.13, T:0.50
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:46596541 original size:37 final size:37
Alignment explanation
Indices: 46596489--46596646 Score: 223
Period size: 37 Copynumber: 4.3 Consensus size: 37
46596479 CTTACATGTC
46596489 AATTATGT-GTTAATTCAAGACTTATGTAATGTTTTT
1 AATTATGTAGTTAATTCAAGACTTATGTAATGTTTTT
46596525 AATTATGTAGTTAATTCAAGACTTATGTAATGTTTTT
1 AATTATGTAGTTAATTCAAGACTTATGTAATGTTTTT
* *
46596562 AATTATGTAG-TGATTCAAAGACTTATGTAATATTTTT
1 AATTATGTAGTTAATTC-AAGACTTATGTAATGTTTTT
* * * *
46596599 AATTATGTAG-CAATTTAAAGATTTATGTAATGCTTTT
1 AATTATGTAGTTAA-TTCAAGACTTATGTAATGTTTTT
46596636 AATTATGTAGT
1 AATTATGTAGT
46596647 GATTTAATTC
Statistics
Matches: 110, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
36 13 0.12
37 95 0.86
38 2 0.02
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.47
Consensus pattern (37 bp):
AATTATGTAGTTAATTCAAGACTTATGTAATGTTTTT
Found at i:46596665 original size:9 final size:9
Alignment explanation
Indices: 46596651--46596711 Score: 86
Period size: 9 Copynumber: 6.6 Consensus size: 9
46596641 TGTAGTGATT
46596651 TAATTCGGG
1 TAATTCGGG
46596660 TAATTCGGG
1 TAATTCGGG
*
46596669 TAATTTGGG
1 TAATTCGGG
46596678 TAATTTTCGGG
1 TAA--TTCGGG
*
46596689 TGATTCGGG
1 TAATTCGGG
46596698 TAATTCGGG
1 TAATTCGGG
46596707 TAATT
1 TAATT
46596712 TTTAACCAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
9 39 0.85
11 7 0.15
ACGTcount: A:0.21, C:0.08, G:0.31, T:0.39
Consensus pattern (9 bp):
TAATTCGGG
Found at i:46596694 original size:29 final size:29
Alignment explanation
Indices: 46596654--46596713 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
46596644 AGTGATTTAA
*
46596654 TTCGGGTAATTCGGGTAATTTGGGTAATT
1 TTCGGGTAATTCGGGTAATTCGGGTAATT
*
46596683 TTCGGGTGATTCGGGTAATTCGGGTAATT
1 TTCGGGTAATTCGGGTAATTCGGGTAATT
46596712 TT
1 TT
46596714 TAACCAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.18, C:0.08, G:0.32, T:0.42
Consensus pattern (29 bp):
TTCGGGTAATTCGGGTAATTCGGGTAATT
Done.