Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 156 of 187
Found at i:46972905 original size:23 final size:23
Alignment explanation
Indices: 46972879--46973287 Score: 287
Period size: 23 Copynumber: 17.5 Consensus size: 23
46972869 TGATGCTTAA
*
46972879 ATGCTGCCCAATTTGTTGTATTT
1 ATGCTGCCCAATTTGTTGTATAT
* * *
46972902 ATGCTGCCTAAATTGTTATATAT
1 ATGCTGCCCAATTTGTTGTATAT
* ** * *
46972925 ATGCTGTCCAATTTTGAAGTAAAA
1 ATGCTGCCCAA-TTTGTTGTATAT
* * *
46972949 ATGTTGCTCAATTTGTTATATAT
1 ATGCTGCCCAATTTGTTGTATAT
* * *
46972972 ATGCTTCCTAAATTGTTGTATAT
1 ATGCTGCCCAATTTGTTGTATAT
* * * *
46972995 ATGCTGTCCAATTTTGATGTAAAA
1 ATGCTGCCCAA-TTTGTTGTATAT
* * * *
46973019 ATGTTGCTCAATTTGGTATATAT
1 ATGCTGCCCAATTTGTTGTATAT
* *
46973042 ATGCTGCCTAAATTGTTGTATAT
1 ATGCTGCCCAATTTGTTGTATAT
* * * * *
46973065 ATGCTGTCAAATTTTGATGTAAAA
1 ATGCTGCCCAA-TTTGTTGTATAT
** * *
46973089 ATATTGCTCAATTTGTTATATAT
1 ATGCTGCCCAATTTGTTGTATAT
* *
46973112 ATGCTGCCTAAATTGTTGTATAT
1 ATGCTGCCCAATTTGTTGTATAT
* * * * *
46973135 ATGCTGTCAAATTTTGATGTAAAA
1 ATGCTGCCCAA-TTTGTTGTATAT
* * * *
46973159 ATGTTGCTCAATTTGGTATATAT
1 ATGCTGCCCAATTTGTTGTATAT
46973182 ATGCTGCCCAATTTGTTGTATAT
1 ATGCTGCCCAATTTGTTGTATAT
* * * *
46973205 ATGCTGTCCAATTTTTGGTGTAAAA
1 ATGCTGCCCAA--TTTGTTGTATAT
*
46973230 ATGCTGCTCAATTTTGTTGTATAT
1 ATGCTGCCCAA-TTTGTTGTATAT
*
46973254 ATGCTGCCCAAATTGTTGTATAT
1 ATGCTGCCCAATTTGTTGTATAT
*
46973277 ATGCTGTCCAA
1 ATGCTGCCCAA
46973288 ATTTTGGTGT
Statistics
Matches: 283, Mismatches: 97, Indels: 12
0.72 0.25 0.03
Matches are distributed among these distances:
23 186 0.66
24 79 0.28
25 18 0.06
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.43
Consensus pattern (23 bp):
ATGCTGCCCAATTTGTTGTATAT
Found at i:46972961 original size:70 final size:70
Alignment explanation
Indices: 46972877--46973304 Score: 649
Period size: 70 Copynumber: 6.1 Consensus size: 70
46972867 TTTGATGCTT
* * * * *
46972877 AAATGCTGCCCAATTTGTTGTATTTATGCTGCCTAAATTGTTATATATATGCTGTCCAATTTTGA
1 AAATGTTGCTCAATTTGTTATATATATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGA
*
46972942 AGTAA
66 TGTAA
*
46972947 AAATGTTGCTCAATTTGTTATATATATGCTTCCTAAATTGTTGTATATATGCTGTCCAATTTTGA
1 AAATGTTGCTCAATTTGTTATATATATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGA
46973012 TGTAA
66 TGTAA
* *
46973017 AAATGTTGCTCAATTTGGTATATATATGCTGCCTAAATTGTTGTATATATGCTGTCAAATTTTGA
1 AAATGTTGCTCAATTTGTTATATATATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGA
46973082 TGTAA
66 TGTAA
* *
46973087 AAATATTGCTCAATTTGTTATATATATGCTGCCTAAATTGTTGTATATATGCTGTCAAATTTTGA
1 AAATGTTGCTCAATTTGTTATATATATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGA
46973152 TGTAA
66 TGTAA
* * *
46973157 AAATGTTGCTCAATTTGGTATATATATGCTGCCCAATTTGTTGTATATATGCTGTCCAATTTTTG
1 AAATGTTGCTCAATTTGTTATATATATGCTGCCTAAATTGTTGTATATATGCTGTCCAA-TTTTG
*
46973222 GTGTAA
65 ATGTAA
* * *
46973228 AAATGCTGCTCAATTTTGTTGTATATATGCTGCCCAAATTGTTGTATATATGCTGTCCAAATTTT
1 AAATGTTGCTCAA-TTTGTTATATATATGCTGCCTAAATTGTTGTATATATGCTGTCC-AATTTT
* *
46973293 GGTGTGA
64 GATGTAA
46973300 AAATG
1 AAATG
46973305 CTGTCTAGTT
Statistics
Matches: 332, Mismatches: 23, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
70 252 0.76
71 22 0.07
72 56 0.17
73 2 0.01
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.43
Consensus pattern (70 bp):
AAATGTTGCTCAATTTGTTATATATATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGA
TGTAA
Found at i:46972973 original size:47 final size:47
Alignment explanation
Indices: 46972914--46973264 Score: 157
Period size: 47 Copynumber: 7.5 Consensus size: 47
46972904 GCTGCCTAAA
*
46972914 TTGTTATATATATGCTGTCCAATTTTGAAGTAAAAATGTTGCTCAAT
1 TTGTTATATATATGCTGTCCAATTTTGAAGTAAAAATGCTGCTCAAT
* ** * *
46972961 TTGTTATATATATGCT-TCCTAA-ATTGTTGTATATATGCTG-TCCAATT
1 TTGTTATATATATGCTGTCC-AATTTTGAAGTAAAAATGCTGCT-CAA-T
* * * * * * * * * *
46973008 TTGATGTAAAAATGTTG-CTCAATTTGGTA-TATATATGCTGC-CTAAA
1 TTGTTATATATATGCTGTC-CAATTTTGAAGTAAAAATGCTGCTC-AAT
* * * **
46973054 TTGTTGTATATATGCTGTCAAATTTTGATGTAAAAATATTGCTCAAT
1 TTGTTATATATATGCTGTCCAATTTTGAAGTAAAAATGCTGCTCAAT
* ** * *
46973101 TTGTTATATATATGCTG-CCTAA-ATTGTTGTATATATGCTG-TCAAATT
1 TTGTTATATATATGCTGTCC-AATTTTGAAGTAAAAATGCTGCTC-AA-T
* * * * * * * * * *
46973148 TTGATGTAAAAATGTTG-CTCAATTTGGTA-TATATATGCTGCCCAAT
1 TTGTTATATATATGCTGTC-CAATTTTGAAGTAAAAATGCTGCTCAAT
* **
46973194 TTGTTGTATATATGCTGTCCAATTTTTGGTGTAAAAATGCTGCTCAATT
1 TTGTTATATATATGCTGTCCAA-TTTTGAAGTAAAAATGCTGCTCAA-T
* *
46973243 TTGTTGTATATATGCTGCCCAA
1 TTGTTATATATATGCTGTCCAA
46973265 ATTGTTGTAT
Statistics
Matches: 227, Mismatches: 56, Indels: 40
0.70 0.17 0.12
Matches are distributed among these distances:
45 3 0.01
46 70 0.31
47 109 0.48
48 23 0.10
49 22 0.10
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.44
Consensus pattern (47 bp):
TTGTTATATATATGCTGTCCAATTTTGAAGTAAAAATGCTGCTCAAT
Found at i:46973308 original size:25 final size:25
Alignment explanation
Indices: 46972988--46973359 Score: 127
Period size: 23 Copynumber: 15.8 Consensus size: 25
46972978 CCTAAATTGT
* *
46972988 TGTATATATGCTGTCC-AATTTTGA
1 TGTATAAATGCTGTCCAAATTTTGG
* *
46973012 TGTAAAAATGTTG-CTC-AA-TTTGG
1 TGTATAAATGCTGTC-CAAATTTTGG
* * *
46973035 TATATATATGCTG-CCTAAA--TTGT
1 TGTATAAATGCTGTCC-AAATTTTGG
* *
46973058 TGTATATATGCTGT-CAAATTTTGA
1 TGTATAAATGCTGTCCAAATTTTGG
* ** *
46973082 TGTAAAAATATTG-CTC-AA-TTTGT
1 TGTATAAATGCTGTC-CAAATTTTGG
* * *
46973105 TATATATATGCTG-CCTAAA--TTGT
1 TGTATAAATGCTGTCC-AAATTTTGG
* *
46973128 TGTATATATGCTGT-CAAATTTTGA
1 TGTATAAATGCTGTCCAAATTTTGG
* *
46973152 TGTAAAAATGTTG-CTC-AA-TTTGG
1 TGTATAAATGCTGTC-CAAATTTTGG
* * * *
46973175 TATATATATGCTG-CCCAA-TTTGT
1 TGTATAAATGCTGTCCAAATTTTGG
* *
46973198 TGTATATATGCTGTCCAATTTTTGG
1 TGTATAAATGCTGTCCAAATTTTGG
* *
46973223 TGTAAAAATGCTG-CTC-AATTTTGT
1 TGTATAAATGCTGTC-CAAATTTTGG
* * *
46973247 TGTATATATGCTGCCCAAA--TTGT
1 TGTATAAATGCTGTCCAAATTTTGG
*
46973270 TGTATATATGCTGTCCAAATTTTGG
1 TGTATAAATGCTGTCCAAATTTTGG
* *
46973295 TGTGA-AAATGCTGT-C-TAGTTTGG
1 TGT-ATAAATGCTGTCCAAATTTTGG
* * *
46973318 TATATAAATGTTGTCCAAA--TTGA
1 TGTATAAATGCTGTCCAAATTTTGG
**
46973341 TGTATAAGGGCTGTCCAAA
1 TGTATAAATGCTGTCCAAA
46973360 CAGGGTAGAT
Statistics
Matches: 266, Mismatches: 55, Indels: 55
0.71 0.15 0.15
Matches are distributed among these distances:
22 10 0.04
23 149 0.56
24 70 0.26
25 36 0.14
26 1 0.00
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (25 bp):
TGTATAAATGCTGTCCAAATTTTGG
Found at i:46976463 original size:38 final size:38
Alignment explanation
Indices: 46976375--46976463 Score: 124
Period size: 38 Copynumber: 2.3 Consensus size: 38
46976365 CAATTATCAC
* * * *
46976375 AGAATACGCCACATGGGCTTTATCGAATATGCCATTAT
1 AGAATACGCCACATGGGCCTCACCAAATATGCCATTAT
*
46976413 AGAATACACCACATGGGCCTCACCAAATATGCCATTAT
1 AGAATACGCCACATGGGCCTCACCAAATATGCCATTAT
*
46976451 AGAATATGCCACA
1 AGAATACGCCACA
46976464 CGGGATTCAC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.24
Consensus pattern (38 bp):
AGAATACGCCACATGGGCCTCACCAAATATGCCATTAT
Found at i:46976474 original size:38 final size:38
Alignment explanation
Indices: 46976400--46976476 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 38
46976390 GGCTTTATCG
* *
46976400 AATATGCCATTATAGAATACACCACATGGGCCTCACCA
1 AATATGCCATTATAGAATACACCACACGGGACTCACCA
** *
46976438 AATATGCCATTATAGAATATGCCACACGGGATTCACCA
1 AATATGCCATTATAGAATACACCACACGGGACTCACCA
46976476 A
1 A
46976477 TACACCATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.22
Consensus pattern (38 bp):
AATATGCCATTATAGAATACACCACACGGGACTCACCA
Found at i:46984951 original size:71 final size:71
Alignment explanation
Indices: 46984845--46984982 Score: 267
Period size: 71 Copynumber: 1.9 Consensus size: 71
46984835 TGGATGTGAC
46984845 TGACTAGAATGTCAATACATCTACTAGACCCAAGAAGAATAGATCTTGAATCTATTTATGGATTT
1 TGACTAGAATGTCAATACATCTACTAGACCCAAGAAGAATAGATCTTGAATCTATTTATGGATTT
46984910 ATGTAT
66 ATGTAT
*
46984916 TGACTAGAATGTCAATACATCTACTAGACCCAAGAAGAATGGATCTTGAATCTATTTATGGATTT
1 TGACTAGAATGTCAATACATCTACTAGACCCAAGAAGAATAGATCTTGAATCTATTTATGGATTT
46984981 AT
66 AT
46984983 TCATTTGTGG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.33
Consensus pattern (71 bp):
TGACTAGAATGTCAATACATCTACTAGACCCAAGAAGAATAGATCTTGAATCTATTTATGGATTT
ATGTAT
Found at i:46985644 original size:27 final size:28
Alignment explanation
Indices: 46985613--46985666 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
46985603 TTGCTCACAT
* *
46985613 TAGTTT-TTTCTTTTCTTTTCTTTTTTC
1 TAGTTTCTTTCTTTCCCTTTCTTTTTTC
46985640 TAGTTTCTTTCTTTCCCTTTCTTTTTT
1 TAGTTTCTTTCTTTCCCTTTCTTTTTT
46985667 TTTATTTCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.04, C:0.19, G:0.04, T:0.74
Consensus pattern (28 bp):
TAGTTTCTTTCTTTCCCTTTCTTTTTTC
Found at i:46985650 original size:18 final size:17
Alignment explanation
Indices: 46985616--46985653 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
46985606 CTCACATTAG
46985616 TTTTTTCTTTTCTTTTC
1 TTTTTTCTTTTCTTTTC
46985633 TTTTTTCTAGTTTC-TTTC
1 TTTTTTCT--TTTCTTTTC
46985651 TTT
1 TTT
46985654 CCCTTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 7 0.37
19 4 0.21
ACGTcount: A:0.03, C:0.16, G:0.03, T:0.79
Consensus pattern (17 bp):
TTTTTTCTTTTCTTTTC
Found at i:46989627 original size:13 final size:14
Alignment explanation
Indices: 46989609--46989646 Score: 60
Period size: 13 Copynumber: 2.7 Consensus size: 14
46989599 TCGTTATGTG
46989609 AAAAATTAAA-TAA
1 AAAAATTAAACTAA
46989622 AAAAATTAAACTAA
1 AAAAATTAAACTAA
46989636 AATAAATTAAA
1 AA-AAATTAAA
46989647 GAAACAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 10 0.43
14 5 0.22
15 8 0.35
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAAATTAAACTAA
Found at i:46995912 original size:16 final size:18
Alignment explanation
Indices: 46995886--46995918 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
46995876 TTAATTTAAA
46995886 TAAACTAA-TTTCTCAAT
1 TAAACTAATTTTCTCAAT
46995903 TAAA-TAATTTTCTCAA
1 TAAACTAATTTTCTCAA
46995919 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAACTAATTTTCTCAAT
Found at i:46997101 original size:21 final size:21
Alignment explanation
Indices: 46997067--46997122 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
46997057 GCTTAAAGGA
*
46997067 GCCCAAATCATCCACATGCAT
1 GCCCAAACCATCCACATGCAT
*
46997088 GCCTAAACCATCCACATGCAT
1 GCCCAAACCATCCACATGCAT
46997109 GCCCAAACCATCCA
1 GCCCAAACCATCCA
46997123 TGTGACTTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.34, C:0.41, G:0.09, T:0.16
Consensus pattern (21 bp):
GCCCAAACCATCCACATGCAT
Found at i:46997583 original size:27 final size:28
Alignment explanation
Indices: 46997541--46997600 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
46997531 ATTTTGTCGA
* *
46997541 AATTCATACTTTAATTA-TAAAATAATT-
1 AATTTATACTTAAATTATTAAAAT-ATTG
46997568 AATTTATACTTAAATTATTAAAATATTG
1 AATTTATACTTAAATTATTAAAATATTG
46997596 AATTT
1 AATTT
46997601 TAATTATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 18 0.62
28 11 0.38
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (28 bp):
AATTTATACTTAAATTATTAAAATATTG
Found at i:47002304 original size:4 final size:5
Alignment explanation
Indices: 47002280--47002329 Score: 59
Period size: 5 Copynumber: 10.0 Consensus size: 5
47002270 TTACGTTTTA
*
47002280 TTTCT TTTCT TTTCT TTTC- TTTC- TTTCT TTTGCC TTTCGT TTTCT TTTCT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTT-CT TTTC-T TTTCT TTTCT
47002330 CTGTTTCTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
4 8 0.20
5 24 0.60
6 8 0.20
ACGTcount: A:0.00, C:0.22, G:0.04, T:0.74
Consensus pattern (5 bp):
TTTCT
Found at i:47002317 original size:19 final size:19
Alignment explanation
Indices: 47002280--47002329 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 19
47002270 TTACGTTTTA
*
47002280 TTTCTTTTCTTTTCTTTTC
1 TTTCTTTTCTTTTCCTTTC
47002299 TTTC-TTTCTTTTGCCTTTC
1 TTTCTTTTCTTTT-CCTTTC
47002318 GTTTTCTTTTCT
1 --TTTCTTTTCT
47002330 CTGTTTCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 8 0.31
19 9 0.35
21 4 0.15
22 5 0.19
ACGTcount: A:0.00, C:0.22, G:0.04, T:0.74
Consensus pattern (19 bp):
TTTCTTTTCTTTTCCTTTC
Found at i:47009654 original size:175 final size:177
Alignment explanation
Indices: 47009348--47009705 Score: 648
Period size: 175 Copynumber: 2.0 Consensus size: 177
47009338 GTAACGTGAT
*
47009348 TGGTTGGGAGTAAATAAAATATACTGACTGGTCAAACAACATATGCACCAGATTCTCTGTTATAT
1 TGGTTGGGAGTAAATAAAATAGACTGACTGGTCAAACAACATATGCACCAGATTCTCTGTTATAT
*
47009413 TTTTCTCATTTTTTGTAGGGGATTTAAGGGACAATTTTTGTATGAATTCGACACTTGTTAAGATC
66 TTTTCCCATTTTTTGTAGGGGATTTAAGGGACAATTTTTGTATGAATTCGACACTTGTTAAGATC
*
47009478 CACTAAGAGGAAATGA-ATATATATATGGCAAGAAGGAATATTCTAA
131 CACAAAGAGGAAATGAGATATATATATGGCAAGAAGGAATATTCTAA
* *
47009524 TGGTTGGGAGTAAATAGAATAGACTGACTGGTCAAACAACATATGCACCAGATTCTCTTTTATA-
1 TGGTTGGGAGTAAATAAAATAGACTGACTGGTCAAACAACATATGCACCAGATTCTCTGTTATAT
47009588 TTTTCCCATTTTTTGTAGGGGATTTAAGGGACAATTTTTGTATGAATTCGACACTTGTTAAGATC
66 TTTTCCCATTTTTTGTAGGGGATTTAAGGGACAATTTTTGTATGAATTCGACACTTGTTAAGATC
47009653 CACAAAGAGGAAATGAGTATATATATATGGCAAGAAGGAATATTCTAA
131 CACAAAGAGGAAATGAG-ATATATATATGGCAAGAAGGAATATTCTAA
47009701 TGGTT
1 TGGTT
47009706 TTTCTTCCTT
Statistics
Matches: 175, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
175 79 0.45
176 61 0.35
177 35 0.20
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (177 bp):
TGGTTGGGAGTAAATAAAATAGACTGACTGGTCAAACAACATATGCACCAGATTCTCTGTTATAT
TTTTCCCATTTTTTGTAGGGGATTTAAGGGACAATTTTTGTATGAATTCGACACTTGTTAAGATC
CACAAAGAGGAAATGAGATATATATATGGCAAGAAGGAATATTCTAA
Found at i:47013138 original size:43 final size:43
Alignment explanation
Indices: 47013089--47013330 Score: 270
Period size: 43 Copynumber: 5.6 Consensus size: 43
47013079 TGTGGAAAAT
* * *
47013089 GCCGCTATAGAACATGATCATTAACGGCGCTTTTATCACAAAC
1 GCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAAC
* *
47013132 GCCGCTAAAGAACATGACCTTTAACGGCGCTTTTATCACAAAC
1 GCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAAC
* * *
47013175 GCTGCTAAAGAACATGATCTTTAGCAGCGCTTTTATTACAAAC
1 GCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAAC
* * *** *
47013218 GCCGCTAAAATAACATGATCTTTGGCGGCGCTTTGCCCACAAAT
1 GCCGCT-AAAGAACATGATCTTTAGCGGCGCTTTTATCACAAAC
* * * * *
47013262 GCCGCTAAAGATCATTACCTTTAGTGGCGCTTTTATCTCAAAC
1 GCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAAC
* *
47013305 GTCGCTAAAGATCATG-TCCTTTAGCG
1 GCCGCTAAAGAACATGAT-CTTTAGCG
47013331 ACGTTAACAA
Statistics
Matches: 165, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
43 130 0.79
44 35 0.21
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (43 bp):
GCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAAC
Found at i:47013284 original size:87 final size:87
Alignment explanation
Indices: 47013089--47013327 Score: 241
Period size: 87 Copynumber: 2.8 Consensus size: 87
47013079 TGTGGAAAAT
* * * * * *
47013089 GCCGCTATAGAACATGATCATTAACGGCGCTTTTATCACAAACGCCGCT-AAAGAACATGACCTT
1 GCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTATTACAAACGCCGCTAAAAGAACATGACCTT
* *
47013153 TAACGGCGCTTTTATCACAAAC
66 TAACGGCGCTTTGACCACAAAC
* * * *
47013175 GCTGCTAAAGAACATGATCTTTAGCAGCGCTTTTATTACAAACGCCGCTAAAATAACATGATCTT
1 GCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTATTACAAACGCCGCTAAAAGAACATGACCTT
** * *
47013240 TGGCGGCGCTTTGCCCACAAAT
66 TAACGGCGCTTTGACCACAAAC
* * ** * * *
47013262 GCCGCTAAAGATCATTACCTTTAGTGGCGCTTTTATCT-CAAACGTCGCT-AAAGATCATGTCCT
1 GCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTAT-TACAAACGCCGCTAAAAGAACATGACCT
47013325 TTA
65 TTA
47013328 GCGACGTTAA
Statistics
Matches: 125, Mismatches: 26, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
86 55 0.44
87 69 0.55
88 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (87 bp):
GCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTATTACAAACGCCGCTAAAAGAACATGACCTT
TAACGGCGCTTTGACCACAAAC
Found at i:47014584 original size:193 final size:191
Alignment explanation
Indices: 47014350--47014705 Score: 459
Period size: 193 Copynumber: 1.9 Consensus size: 191
47014340 TATTATTATG
* * * *
47014350 TTCATTAACATCATAAAAAATCATCAATTACATCCTAATAACAATTTCAACTCCAAAGTT-GACT
1 TTCATTAACATCATAAAAAAACATCAATTACATCCTAATAACAATTCCAACCCCAAAGTTCAACT
* * * * * ** *
47014414 AAGGAAGCTTTGTAGGATATGA-AAACACAAGTGCATTTCCATTCAAGTAAATTGTTGTGTTGTA
66 AA-AAAGCATTGCAGGATA-CACAAACACAAATGCATTTCCATTCAAGT-AATAATAGTGTTGTA
* *
47014478 ATCACAAAG-TTCAAATGAAAACCAATGACTTGAACCTATAAAAAATTCAACTTAGTCTATTGTA
128 ATCACAAAGCTCCAAATGAAAACC-ATGACTTAAACCTATAAAAAATTCAACTTAGTCTATTGTA
*
47014542 TTCATTAACATCA-ACATAAAAACATCAATTACTTCCTAATAACAATTCCAACCCCAAAGTTCAA
1 TTCATTAACATCATA-A-AAAAACATCAATTACATCCTAATAACAATTCCAACCCCAAAGTTCAA
* ** *
47014606 TTAAAAAGCATTGCAGGATACACAAATGCAAATGCATTTCCATTCAAGTAATAATAGTGTTTTAA
64 CTAAAAAGCATTGCAGGATACACAAACACAAATGCATTTCCATTCAAGTAATAATAGTGTTGTAA
47014671 TCACAAAGCTCCAAATGAAAACCATGACTTAAACC
129 TCACAAAGCTCCAAATGAAAACCATGACTTAAACC
47014706 CATTATAGAT
Statistics
Matches: 140, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
191 1 0.01
192 46 0.33
193 89 0.64
194 4 0.03
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (191 bp):
TTCATTAACATCATAAAAAAACATCAATTACATCCTAATAACAATTCCAACCCCAAAGTTCAACT
AAAAAGCATTGCAGGATACACAAACACAAATGCATTTCCATTCAAGTAATAATAGTGTTGTAATC
ACAAAGCTCCAAATGAAAACCATGACTTAAACCTATAAAAAATTCAACTTAGTCTATTGTA
Found at i:47014744 original size:193 final size:193
Alignment explanation
Indices: 47014350--47014757 Score: 454
Period size: 193 Copynumber: 2.1 Consensus size: 193
47014340 TATTATTATG
* * * *
47014350 TTCATTAACATCATA-A-AAAATCATCAATTACATCCTAATAACAATTTCAACTCCAAAGTTGAC
1 TTCATTAACATCA-ACATAAAAACATCAATTACATCCTAATAACAATTCCAACCCCAAAGTTAAC
* * * * * ** *
47014413 TAAGGAAGCTTTGTAGGATATGAAAACACAAGTGCATTTCCATTCAAGTAAATTGTTGTGTTGTA
65 TAAGAAAGCATTGCAGGATATCAAAACACAAATGCATTTCCATTCAAGTAAATAATAGTGTTGTA
* * * *
47014478 ATCACAAAGTTCAAATGAAAACCAATGACTTGAACCTATAAAAAATTCAACTTAGTCTATTGTA
130 ATCACAAAGTCCAAATGAAAACCAATGACTTAAACCCATAAAAAATTCAACTTAGTCCATTGTA
* *
47014542 TTCATTAACATCAACATAAAAACATCAATTACTTCCTAATAACAATTCCAACCCCAAAGTTCAAT
1 TTCATTAACATCAACATAAAAACATCAATTACATCCTAATAACAATTCCAACCCCAAAGTT-AAC
** *
47014607 TAA-AAAGCATTGCAGGATA-CACAAATGCAAATGCATTTCCATTCAAGT-AATAATAGTGTTTT
65 TAAGAAAGCATTGCAGGATATCA-AAACACAAATGCATTTCCATTCAAGTAAATAATAGTGTTGT
* * *
47014669 AATCACAAAGCTCCAAATGAAAACC-ATGACTTAAACCCATTATAGATTACAAACTTAGTCCATA
129 AATCACAAAG-TCCAAATGAAAACCAATGACTTAAACCCATAAAAAATT-C-AACTTAGTCCAT-
*
47014733 TG-C
190 TGTA
*
47014736 TT-ATTAACATGAACATTAAAAA
1 TTCATTAACATCAACA-TAAAAA
47014758 AAACAATTCT
Statistics
Matches: 181, Mismatches: 26, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
191 1 0.01
192 53 0.29
193 102 0.56
194 23 0.13
195 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.10, T:0.29
Consensus pattern (193 bp):
TTCATTAACATCAACATAAAAACATCAATTACATCCTAATAACAATTCCAACCCCAAAGTTAACT
AAGAAAGCATTGCAGGATATCAAAACACAAATGCATTTCCATTCAAGTAAATAATAGTGTTGTAA
TCACAAAGTCCAAATGAAAACCAATGACTTAAACCCATAAAAAATTCAACTTAGTCCATTGTA
Found at i:47016746 original size:14 final size:14
Alignment explanation
Indices: 47016729--47016792 Score: 56
Period size: 15 Copynumber: 4.4 Consensus size: 14
47016719 CCCCAACCCT
*
47016729 TAAACCATAAATCA
1 TAAACCATAAACCA
* *
47016743 TAAACCCTAAACCT
1 TAAACCATAAACCA
* *
47016757 TAAACTCATAATCCC
1 TAAAC-CATAAACCA
*
47016772 TAAACTCATAATCCA
1 TAAAC-CATAAACCA
47016787 TAAACC
1 TAAACC
47016793 TTTAAATAGC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
14 17 0.40
15 25 0.60
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCATAAACCA
Found at i:47016748 original size:28 final size:29
Alignment explanation
Indices: 47016708--47016767 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
47016698 CCCTAACCCT
* * *
47016708 TAAATCTTGAACCCCAACCCTTAAAC-CA
1 TAAATCATAAACCCCAAACCTTAAACTCA
*
47016736 TAAATCATAAACCCTAAACCTTAAACTCA
1 TAAATCATAAACCCCAAACCTTAAACTCA
47016765 TAA
1 TAA
47016768 TCCCTAAACT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 22 0.81
29 5 0.19
ACGTcount: A:0.45, C:0.30, G:0.02, T:0.23
Consensus pattern (29 bp):
TAAATCATAAACCCCAAACCTTAAACTCA
Found at i:47016765 original size:22 final size:21
Alignment explanation
Indices: 47016730--47016792 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 21
47016720 CCCAACCCTT
47016730 AAACCATAAATCATAAACCCT
1 AAACCATAAATCATAAACCCT
* *
47016751 AAACCTTAAACTCATAATCCCT
1 AAACCATAAA-TCATAAACCCT
47016773 AAACTCAT-AATCCATAAACC
1 AAAC-CATAAAT-CATAAACC
47016793 TTTAAATAGC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 10 0.29
22 23 0.66
23 2 0.06
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (21 bp):
AAACCATAAATCATAAACCCT
Found at i:47016777 original size:15 final size:15
Alignment explanation
Indices: 47016757--47016791 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
47016747 CCCTAAACCT
*
47016757 TAAACTCATAATCCC
1 TAAACTCATAATCCA
47016772 TAAACTCATAATCCA
1 TAAACTCATAATCCA
47016787 TAAAC
1 TAAAC
47016792 CTTTAAATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAACTCATAATCCA
Found at i:47017039 original size:15 final size:15
Alignment explanation
Indices: 47017015--47017048 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
47017005 CATAACGTCT
*
47017015 AACCCCTAACCCATA
1 AACCCATAACCCATA
*
47017030 AACCCATAACCCCTA
1 AACCCATAACCCATA
47017045 AACC
1 AACC
47017049 TTAAATCCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.47, G:0.00, T:0.12
Consensus pattern (15 bp):
AACCCATAACCCATA
Found at i:47017078 original size:14 final size:14
Alignment explanation
Indices: 47017061--47017097 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
47017051 AAATCCCAAC
47017061 CCCTAAACCATAAT
1 CCCTAAACCATAAT
* *
47017075 CCCTAATCCATACT
1 CCCTAAACCATAAT
47017089 CCCTAAACC
1 CCCTAAACC
47017098 TTAAAATAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.35, C:0.43, G:0.00, T:0.22
Consensus pattern (14 bp):
CCCTAAACCATAAT
Found at i:47017498 original size:41 final size:41
Alignment explanation
Indices: 47017453--47017549 Score: 135
Period size: 41 Copynumber: 2.4 Consensus size: 41
47017443 GCGCCTTTTC
* *
47017453 AAAACGCTGCTAAA-TCCCCCAGCATTAGCTG-CGCTTTCTTA
1 AAAACGCCGCTAAAGT-CACCAGCATTAGC-GACGCTTTCTTA
*
47017494 AAAACGCCGCTAAAGTCACCAGCATTAGCGACGCTTTTTTA
1 AAAACGCCGCTAAAGTCACCAGCATTAGCGACGCTTTCTTA
47017535 AAAACGCCGCTAAAG
1 AAAACGCCGCTAAAG
47017550 ACCCGAAAGG
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
40 1 0.02
41 49 0.96
42 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (41 bp):
AAAACGCCGCTAAAGTCACCAGCATTAGCGACGCTTTCTTA
Found at i:47022294 original size:32 final size:32
Alignment explanation
Indices: 47022253--47022316 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
47022243 ACCAAGAAAG
47022253 AAGAATTCAATTTGGGTGATAGTTGATAGATT
1 AAGAATTCAATTTGGGTGATAGTTGATAGATT
47022285 AAGAATTCAATTTGGGTGATAGTTGATAGATT
1 AAGAATTCAATTTGGGTGATAGTTGATAGATT
47022317 GATAAAGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.38
Consensus pattern (32 bp):
AAGAATTCAATTTGGGTGATAGTTGATAGATT
Found at i:47025838 original size:132 final size:132
Alignment explanation
Indices: 47025639--47026981 Score: 1707
Period size: 132 Copynumber: 10.3 Consensus size: 132
47025629 GCAACTTCAA
* * * *
47025639 GGAGATAAGATCTGCAATCTTTAATCTATTCCACTGCTG-CCTAGGAAAGTAGAATTACTGGCTT
1 GGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAAGG-AAGTAGAATTACTGGCTT
* *
47025703 CAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-TCACCATCTTTGATCTGCCCCACTACTGC
65 CAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-GCCATCTTTGATCTGCTCCACTACTGC
47025767 TTAG
129 TTAG
*
47025771 GGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGGCTTC
1 GGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGGCTTC
* * * *
47025836 AATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCTCCACTACTGCTT
66 AATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTT
47025901 AG
131 AG
** * * * *
47025903 GGAGGTAATATCTGAAATCTTCAATCTATTCCATTGCTGCCC-AGGGAGATAGAATTACTAGCTT
1 GGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAAGGAAG-TAGAATTACTGGCTT
* *
47025967 CAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTACTGCT
65 CAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCT
47026032 TAG
130 TAG
* ** * *
47026035 GGAGGA-AAGATCTG--A-----AATCTATTCCACTGCTACTTAGGGAAGTAGAATTGCTGGCTT
1 GGA-GACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGGCTT
* *
47026092 CATTGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCA-CATTCGATCTGCTCCACTACTGC
65 CAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATC-TTTGATCTGCTCCACTACTGC
47026156 TTAG
129 TTAG
* * * *
47026160 GGAGGCAAGATCTGAAATCTTCAATCTATTCTACTGCTGCCTAGGGAAGTAGAATTACTGGCTTC
1 GGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGGCTTC
*
47026225 AATGTACTCCACTGTAACCATAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTT
66 AATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTT
47026290 AG
131 AG
** * *
47026292 GGAGGTAAGATCTGAAATCTTCAATCTATTCCACTGCTG-CCTAGGGAGATAGAATTACTGGCTT
1 GGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAAGGAAG-TAGAATTACTGGCTT
* *
47026356 CAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-TCACCATCTTTGATCTGCCCCACTACTGC
65 CAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-GCCATCTTTGATCTGCTCCACTACTGC
47026420 TTAG
129 TTAG
* *
47026424 GGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGGCTTC
* * ** * *
47026489 AATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCCTTGATCTACTCCACTACTGCTT
66 AATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTT
47026554 AG
131 AG
** * * * *
47026556 GGAGGTAATATCTGAAATCTTCAATCTATTCCATTGCTGCCC-AGGGAGATAGAATTACTAGCTT
1 GGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAAGGAAG-TAGAATTACTGGCTT
* *
47026620 CAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTACTGCT
65 CAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCT
47026685 TAG
130 TAG
* * * *
47026688 GGAGGA-AAGATCTG--A-----AATCTATTCCACTGCTACTCAGGGAAGTAGAATTGCTGGCTT
1 GGA-GACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGGCTT
* *
47026745 CATTGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCA-CATTCGATCTGCTCCACTACTGC
65 CAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATC-TTTGATCTGCTCCACTACTGC
*
47026809 TCAG
129 TTAG
* * * *
47026813 GGAGACAAGATCTGAAATCTTCAATCTATTCTACTGCTGCCTAGGGAAGTAGAATTGCTGGCTTC
1 GGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGGCTTC
* * *
47026878 AATGTACTCCACTGTAACCATAGGGAGGTAAAAT-TCACCATCTTCGATCTGCTTCGCTATCTA-
66 AATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-GCCATCTTTGATCTGC-TC-C-A-CTAC
47026941 TGC--AG
126 TGCTTAG
* ** * *
47026946 GAAGACAAGATCTGCTATCTTCAACCTACTCCACTG
1 GGAGACAAGATCTGAAATCTTCAATCTATTCCACTG
47026982 TCTCCAAGGG
Statistics
Matches: 1070, Mismatches: 104, Indels: 73
0.86 0.08 0.06
Matches are distributed among these distances:
124 5 0.00
125 204 0.19
126 8 0.01
127 2 0.00
130 2 0.00
131 16 0.01
132 776 0.73
133 49 0.05
134 1 0.00
135 4 0.00
136 3 0.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (132 bp):
GGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGGCTTC
AATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTT
AG
Found at i:47026205 original size:44 final size:44
Alignment explanation
Indices: 47026139--47026707 Score: 199
Period size: 44 Copynumber: 12.9 Consensus size: 44
47026129 GCCACATTCG
* * * *
47026139 ATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCA
1 ATCTACTCCACTGCTGCCTAGGGAGGTAAGATCTGAAATCTTCA
* * * *
47026183 ATCTATTCTACTGCTGCCTAGGGAAGT-AGAATTACTG---GCTTCA
1 ATCTACTCCACTGCTGCCTAGGGAGGTAAG-A-T-CTGAAATCTTCA
* * * ** **
47026226 ATGTACTCCACTG-TAACCATAGGGAGGTAAAATCTGCCATCTTTG
1 ATCTACTCCACTGCT-GCC-TAGGGAGGTAAGATCTGAAATCTTCA
* * *
47026271 ATCTGCTCCACTACTGCTTAGGGAGGTAAGATCTGAAATCTTCA
1 ATCTACTCCACTGCTGCCTAGGGAGGTAAGATCTGAAATCTTCA
* * *
47026315 ATCTATTCCACTGCTGCCTAGGGAGAT-AGAATTACTG---GCTTCA
1 ATCTACTCCACTGCTGCCTAGGGAGGTAAG-A-T-CTGAAATCTTCA
* * * * * * **
47026358 ATGTACTCCACTG-TAACCACAGGGAGGTAAAAT-TCACCATCTTTG
1 ATCTACTCCACTGCT-GCC-TAGGGAGGTAAGATCTGA-AATCTTCA
* * * * ** *
47026403 ATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTTA
1 ATCTACTCCACTGCTGCCTAGGGAGGTAAGATCTGAAATCTTCA
* * * *
47026447 ATCTATTCCACTGCTGCCCAGGGAAGT-AGAATTACTG---GCTTCA
1 ATCTACTCCACTGCTGCCTAGGGAGGTAAG-A-T-CTGAAATCTTCA
* ** * * * *
47026490 ATGTACTCCACTGCAACCTCAGGGAGGTAAAATC-CACCATCCTT-G
1 ATCTACTCCACTGCTGCCT-AGGGAGGTAAGATCTGA-AAT-CTTCA
* * *
47026535 ATCTACTCCACTACTGCTTAGGGAGGTAATATCTGAAATCTTCA
1 ATCTACTCCACTGCTGCCTAGGGAGGTAAGATCTGAAATCTTCA
* * * * * *
47026579 ATCTATTCCATTGCTGCCCAGGGAGAT-AGAAT-T-ACTAGCTTCA
1 ATCTACTCCACTGCTGCCTAGGGAGGTAAG-ATCTGA-AATCTTCA
* * * ** **
47026622 ATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCTGTCATCTTTG
1 ATCTACTCCACTGCT-GCCT-AGGGAGGTAAGATCTGAAATCTTCA
* * * *
47026667 ATCTGCTCCACTACTGCTTAGGGAGGAAAGATCTGAAATCT
1 ATCTACTCCACTGCTGCCTAGGGAGGTAAGATCTGAAATCT
47026708 ATTCCACTGC
Statistics
Matches: 367, Mismatches: 116, Indels: 84
0.65 0.20 0.15
Matches are distributed among these distances:
41 1 0.00
42 8 0.02
43 85 0.23
44 190 0.52
45 68 0.19
46 15 0.04
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
ATCTACTCCACTGCTGCCTAGGGAGGTAAGATCTGAAATCTTCA
Found at i:47026383 original size:389 final size:390
Alignment explanation
Indices: 47025660--47026930 Score: 1815
Period size: 389 Copynumber: 3.2 Consensus size: 390
47025650 CTGCAATCTT
*
47025660 TAATCTATTCCACTGCTGCCTAGGAAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC
1 TAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC
* *
47025725 AGGGAGGTAAAAT-TCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGAAAT
66 AGGGAGGTAAAATCT-ACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAAT
* * *
47025789 CTTTAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAAC
129 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* * *
47025854 CTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCTCCACTACTGCTTAGGGAGGTAATATCTGAA
194 CTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGGTAAGATCTGAA
* * *
47025919 ATCTTCAATCTATTCCATTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTA
259 ATCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
* *
47025984 ACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTACTGCTTAGGGAGGA-AAGATCT
324 ACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGA-GACAAGATCT
47026048 G-A
388 GAA
* * * *
47026050 -AATCTATTCCACTGCTACTTAGGGAAGTAGAATTGCTGGCTTCATTGTACTCCACTGTAACCAC
1 TAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC
*
47026114 AGGGAGGTAAAATCTGCCA-CATTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAAT
66 AGGGAGGTAAAATCTACCATC-TT-GATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAAT
* *
47026178 CTTCAATCTATTCTACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
129 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
47026243 CAT-AGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGGTAAGATCTGA
194 C-TCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGGTAAGATCTGA
47026307 AATCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGT
258 AATCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGT
* *
47026372 AACCACAGGGAGGTAAAAT-TCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATC
323 AACCACAGGGAGGTAAAATCT-GCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATC
47026436 TGAAA
387 TG-AA
* *
47026441 TCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAA
1 ----TAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * * * *
47026506 CCTCAGGGAGGTAAAATCCACCATCCTTGATCTACTCCACTACTGCTTAGGGAGGTAATATCTGA
62 CCACAGGGAGGTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGA
* *
47026571 AATCTTCAATCTATTCCATTGCTGCCCAGGG-AGATAGAATTACTAGCTTCAATGTACTCCACTG
126 AATCTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTG
* *
47026635 TAACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTACTGCTTAGGGAGGAAAGATC
190 TAACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGGTAAGATC
* * *
47026700 TG--A-----AATCTATTCCACTGCT-ACTCAGGGA-AGTAGAATTGCTGGCTTCATTGTACTCC
255 TGAAATCTTCAATCTATTCCACTGCTGCCT-AGGGAGA-TAGAATTACTGGCTTCAATGTACTCC
* *
47026756 ACTGTAACCACAGGGAGGTAAAATCTGCCA-CATTCGATCTGCTCCACTACTGCTCAGGGAGACA
318 ACTGTAACCACAGGGAGGTAAAATCTGCCATC-TTTGATCTGCTCCACTACTGCTTAGGGAGACA
47026820 AGATCTGAAA
382 AGATCTG-AA
* *
47026830 TCTTCAATCTATTCTACTGCTGCCTAGGGAAGTAGAATTGCTGGCTTCAATGTACTCCACTGTAA
1 ---T-AATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
*
47026895 CCATAGGGAGGTAAAAT-TCACCATCTTCGATCTGCT
62 CCACAGGGAGGTAAAATCT-ACCATCTT-GATCTGCT
47026931 TCGCTATCTA
Statistics
Matches: 799, Mismatches: 59, Indels: 47
0.88 0.07 0.05
Matches are distributed among these distances:
388 15 0.02
389 545 0.68
390 3 0.00
391 1 0.00
394 1 0.00
395 3 0.00
396 228 0.29
397 2 0.00
398 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (390 bp):
TAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC
AGGGAGGTAAAATCTACCATCTTGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCT
TCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCT
CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGGTAAGATCTGAAAT
CTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAC
CACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAA
Found at i:47026709 original size:521 final size:516
Alignment explanation
Indices: 47025660--47026929 Score: 1856
Period size: 521 Copynumber: 2.4 Consensus size: 516
47025650 CTGCAATCTT
*
47025660 TAATCTATTCCACTGCTGCCTAGGAAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC
1 TAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC
* *
47025725 AGGGAGGTAAAAT-TCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGAAAT
66 AGGGAGGTAAAATCT-GCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAAT
* * * *
47025789 CTTTAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAAC
130 CTTCAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* * * * * ** *
47025854 CTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCTCCACTACTGCTTAGGGAGGTAATATCTGAA
195 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGAA
* *
47025919 ATCTTCAATCTATTCCATTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTA
260 ATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGCA
*** * *
47025984 ACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTACTGCTTAGGGAGGAAAGATCTG
325 ACCTCAGGGAGGTAAAATCCACCATCCTTGATCTACTCCACTACTGCTTAGGGAGGAAAGATCTG
** * * *
47026049 AAATCTATTCCACTGCTACTTAGGGAAGTAGAATTGCTGGCTTCATTGTACTCCACTGTAACCAC
390 AAATCTATTCCACTGCTACCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCACTGTAACCAC
*
47026114 AGGGAGGTAAAATCTGCCACATTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAA
455 AGGGAGGTAAAATCTGCCACATTCGATCTGCTCCACTACTGCTTAGGGAGGAAAGATCTG-AA
*
47026177 TCTTCAATCTATTCTACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 ---T-AATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
* **
47026242 CCATAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGGTAAGATCTGA
62 CCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGA
47026307 AATCTTCAATCTATTCCACTGCTGCCTAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTG
127 AATCTTCAATCTATTCCACTGCTGCCTAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTG
47026371 TAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATC
191 TAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATC
* *
47026436 TGAAATCTTTAATCTATTCCACTGCTGCCCAGGGA-AGTAGAATTACTGGCTTCAATGTACTCCA
256 TGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGA-TAGAATTACTAGCTTCAATGTACTCCA
47026500 CTGCAACCTCAGGGAGGTAAAATCCACCATCCTTGATCTACTCCACTACTGCTTAGGGAGGTAAT
320 CTGCAACCTCAGGGAGGTAAAATCCACCATCCTTGATCTACTCCACTACTGCTTAGGGAGG-AA-
** * *
47026565 ATCTGAAATCTTCAATCTATTCCATTGCTGCCCAGGG-AGATAGAATTACTAGCTTCAATGTACT
383 A---G--ATCTGAAATCTATTCCACTGCTACCCAGGGAAG-TAGAATTACTAGCTTCAATGTACT
* * *
47026629 CCACTGTAACCTCAGGGAGGTAAAATCTGTCATC-TTTGATCTGCTCCACTACTGCTTAGGGAGG
442 CCACTGTAACCACAGGGAGGTAAAATCTGCCA-CATTCGATCTGCTCCACTACTGCTTAGGGAGG
47026693 AAAGATCTG-A
506 AAAGATCTGAA
* * *
47026703 -AATCTATTCCACTGCT-ACTCAGGGAAGTAGAATTGCTGGCTTCATTGTACTCCACTGTAACCA
1 TAATCTATTCCACTGCTGCCT-AGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
* *
47026766 CAGGGAGGTAAAATCTGCCA-CATTCGATCTGCTCCACTACTGCTCAGGGAGACAAGATCTGAAA
65 CAGGGAGGTAAAATCTGCCATC-TTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAA
* *
47026830 TCTTCAATCTATTCTACTGCTGCCTAGGGAAGTAGAATTGCTGGCTTCAATGTACTCCACTGTAA
129 TCTTCAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
* *
47026895 CCATAGGGAGGTAAAATTCACCATCTTCGATCTGC
194 CCACAGGGAGGTAAAATTCACCATCTTTGATCTGC
47026930 TTCGCTATCT
Statistics
Matches: 680, Mismatches: 54, Indels: 31
0.89 0.07 0.04
Matches are distributed among these distances:
520 7 0.01
521 550 0.81
522 5 0.01
523 1 0.00
526 2 0.00
527 2 0.00
528 112 0.16
529 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (516 bp):
TAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC
AGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATC
TTCAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
ACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGAAA
TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGCAA
CCTCAGGGAGGTAAAATCCACCATCCTTGATCTACTCCACTACTGCTTAGGGAGGAAAGATCTGA
AATCTATTCCACTGCTACCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCACTGTAACCACA
GGGAGGTAAAATCTGCCACATTCGATCTGCTCCACTACTGCTTAGGGAGGAAAGATCTGAA
Found at i:47026889 original size:653 final size:653
Alignment explanation
Indices: 47025639--47026930 Score: 2435
Period size: 653 Copynumber: 2.0 Consensus size: 653
47025629 GCAACTTCAA
* *
47025639 GGAGATAAGATCTGCAATCTTTAATCTATTCCACTGCTGCCTAGGAAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCTAGGAAAGTAGAATTACTGGCTTC
47025704 AATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTT
66 AATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTT
47025769 AGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGGCT
131 AGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGGCT
* *
47025834 TCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCTCCACTACTGC
196 TCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCCTTGATCTACTCCACTACTGC
47025899 TTAGGGAGGTAATATCTGAAATCTTCAATCTATTCCATTGCTGCCCAGGGAGATAGAATTACTAG
261 TTAGGGAGGTAATATCTGAAATCTTCAATCTATTCCATTGCTGCCCAGGGAGATAGAATTACTAG
47025964 CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTACT
326 CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTACT
*
47026029 GCTTAGGGAGGAAAGATCTGAAATCTATTCCACTGCTACTTAGGGAAGTAGAATTGCTGGCTTCA
391 GCTTAGGGAGGAAAGATCTGAAATCTATTCCACTGCTACTCAGGGAAGTAGAATTGCTGGCTTCA
*
47026094 TTGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCACATTCGATCTGCTCCACTACTGCTTA
456 TTGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCACATTCGATCTGCTCCACTACTGCTCA
*
47026159 GGGAGGCAAGATCTGAAATCTTCAATCTATTCTACTGCTGCCTAGGGAAGTAGAATTACTGGCTT
521 GGGAGACAAGATCTGAAATCTTCAATCTATTCTACTGCTGCCTAGGGAAGTAGAATTACTGGCTT
* *
47026224 CAATGTACTCCACTGTAACCATAGGGAGGTAAAA-TCTGCCATCTTTGATCTGCTCCACTACTGC
586 CAATGTACTCCACTGTAACCATAGGGAGGTAAAATTC-ACCATCTTCGATCTGCTCCACTACTGC
47026288 TTAG
650 TTAG
* *
47026292 GGAGGTAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCTAGG-GAGATAGAATTACTGGCTT
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCTAGGAAAG-TAGAATTACTGGCTT
47026356 CAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCT
65 CAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCT
*
47026421 TAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGC
130 TAGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGGC
47026486 TTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCCTTGATCTACTCCACTACTG
195 TTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCCTTGATCTACTCCACTACTG
47026551 CTTAGGGAGGTAATATCTGAAATCTTCAATCTATTCCATTGCTGCCCAGGGAGATAGAATTACTA
260 CTTAGGGAGGTAATATCTGAAATCTTCAATCTATTCCATTGCTGCCCAGGGAGATAGAATTACTA
47026616 GCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTAC
325 GCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTAC
47026681 TGCTTAGGGAGGAAAGATCTGAAATCTATTCCACTGCTACTCAGGGAAGTAGAATTGCTGGCTTC
390 TGCTTAGGGAGGAAAGATCTGAAATCTATTCCACTGCTACTCAGGGAAGTAGAATTGCTGGCTTC
47026746 ATTGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCACATTCGATCTGCTCCACTACTGCTC
455 ATTGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCACATTCGATCTGCTCCACTACTGCTC
*
47026811 AGGGAGACAAGATCTGAAATCTTCAATCTATTCTACTGCTGCCTAGGGAAGTAGAATTGCTGGCT
520 AGGGAGACAAGATCTGAAATCTTCAATCTATTCTACTGCTGCCTAGGGAAGTAGAATTACTGGCT
47026876 TCAATGTACTCCACTGTAACCATAGGGAGGTAAAATTCACCATCTTCGATCTGCT
585 TCAATGTACTCCACTGTAACCATAGGGAGGTAAAATTCACCATCTTCGATCTGCT
47026931 TCGCTATCTA
Statistics
Matches: 624, Mismatches: 13, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
652 2 0.00
653 620 0.99
654 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (653 bp):
GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCTAGGAAAGTAGAATTACTGGCTTC
AATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTT
AGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGGCT
TCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCCTTGATCTACTCCACTACTGC
TTAGGGAGGTAATATCTGAAATCTTCAATCTATTCCATTGCTGCCCAGGGAGATAGAATTACTAG
CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTACT
GCTTAGGGAGGAAAGATCTGAAATCTATTCCACTGCTACTCAGGGAAGTAGAATTGCTGGCTTCA
TTGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCACATTCGATCTGCTCCACTACTGCTCA
GGGAGACAAGATCTGAAATCTTCAATCTATTCTACTGCTGCCTAGGGAAGTAGAATTACTGGCTT
CAATGTACTCCACTGTAACCATAGGGAGGTAAAATTCACCATCTTCGATCTGCTCCACTACTGCT
TAG
Found at i:47028313 original size:14 final size:13
Alignment explanation
Indices: 47028281--47028320 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
47028271 AGCCTCTCCG
47028281 TTTTTACAATTTCA
1 TTTTT-CAATTTCA
47028295 TTTTTCAATTTCA
1 TTTTTCAATTTCA
*
47028308 TCTTTTCATTTTC
1 T-TTTTCAATTTC
47028321 CACATCACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 9 0.38
14 15 0.62
ACGTcount: A:0.20, C:0.17, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTTCAATTTCA
Found at i:47033608 original size:18 final size:17
Alignment explanation
Indices: 47033578--47033615 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
47033568 TAATAATAGT
47033578 AAAAAAACGAATTAA-A
1 AAAAAAACGAATTAACA
47033594 AAAAAAACGGAAATTAACA
1 AAAAAAAC-G-AATTAACA
47033613 AAA
1 AAA
47033616 CGAAGGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 6 0.32
19 4 0.21
ACGTcount: A:0.74, C:0.08, G:0.08, T:0.11
Consensus pattern (17 bp):
AAAAAAACGAATTAACA
Found at i:47042433 original size:59 final size:60
Alignment explanation
Indices: 47042322--47042437 Score: 148
Period size: 59 Copynumber: 1.9 Consensus size: 60
47042312 TCAAGGGACC
* * * *
47042322 TAACTTGGATCAAAACAAAGTTCAGACTCCAATATAGAAAATGTTTCTAAGTTTAGGGCT
1 TAACTTGGATCAAAAAAAAGTTCAGACCCCAATATACAAAAAGTTTCTAAGTTTAGGGCT
*
47042382 TAACTTGGA-CAAAAAAAAGTTCA-AGCCCCAATTTACAAAAAGTTT-TCAAGTTTAGG
1 TAACTTGGATCAAAAAAAAGTTCAGA-CCCCAATATACAAAAAGTTTCT-AAGTTTAGG
47042438 CCTTCAAAAG
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
58 2 0.04
59 38 0.78
60 9 0.18
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (60 bp):
TAACTTGGATCAAAAAAAAGTTCAGACCCCAATATACAAAAAGTTTCTAAGTTTAGGGCT
Found at i:47048495 original size:20 final size:20
Alignment explanation
Indices: 47048472--47048515 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
47048462 TAATTTAGCC
* *
47048472 ATTTTTATTTTTATTTTAAT
1 ATTTTTATTTCTAATTTAAT
*
47048492 ATTTTTGTTTCTAATTTAAT
1 ATTTTTATTTCTAATTTAAT
47048512 -TTTT
1 ATTTT
47048516 ACATTTTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (20 bp):
ATTTTTATTTCTAATTTAAT
Found at i:47052313 original size:9 final size:9
Alignment explanation
Indices: 47052295--47052366 Score: 60
Period size: 9 Copynumber: 7.7 Consensus size: 9
47052285 ATCCTTCCTT
47052295 TTTA-TTTA
1 TTTATTTTA
47052303 TTTATTTTA
1 TTTATTTTA
47052312 TTTATTATTATA
1 TTTA-T-TT-TA
47052324 TTTATTTTA
1 TTTATTTTA
47052333 -TTATTGTTA
1 TTTATT-TTA
*
47052342 TTAGTATTATA
1 TT--TATTTTA
47052353 TTTATTTT-
1 TTTATTTTA
47052361 TTTATT
1 TTTATT
47052367 ATTAGAATTG
Statistics
Matches: 54, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
8 15 0.28
9 18 0.33
10 4 0.07
11 7 0.13
12 10 0.19
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (9 bp):
TTTATTTTA
Found at i:47052325 original size:12 final size:12
Alignment explanation
Indices: 47052297--47052398 Score: 57
Period size: 12 Copynumber: 8.1 Consensus size: 12
47052287 CCTTCCTTTT
*
47052297 TATTTATTTATTT
1 TATTTA-TTATTA
47052310 TATTTATTATTA
1 TATTTATTATTA
47052322 TATTTATT-TTA
1 TATTTATTATTA
*
47052333 T-TATTGTTATTA
1 TAT-TTATTATTA
47052345 GTATTATATTTATT-
1 -TATT-TA-TTATTA
*
47052359 TTTTTATTATTA
1 TATTTATTATTA
* *
47052371 GAATTGTGTTTATTA
1 -TATT-T-ATTATTA
*
47052386 TGTTTATTATTA
1 TATTTATTATTA
47052398 T
1 T
47052399 CACTGTTGTT
Statistics
Matches: 69, Mismatches: 10, Indels: 21
0.69 0.10 0.21
Matches are distributed among these distances:
10 1 0.01
11 13 0.19
12 25 0.36
13 14 0.20
14 5 0.07
15 11 0.16
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (12 bp):
TATTTATTATTA
Found at i:47052365 original size:29 final size:29
Alignment explanation
Indices: 47052295--47052366 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
47052285 ATCCTTCCTT
* *
47052295 TTTATTTATTTATTTTATTTATTATTATA
1 TTTATTTTTTTATTTTATTTAGTATTATA
*
47052324 TTTATTTTATTATTGTTA-TTAGTATTATA
1 TTTATTTTTTTATT-TTATTTAGTATTATA
47052353 TTTATTTTTTTATT
1 TTTATTTTTTTATT
47052367 ATTAGAATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 35 0.92
30 3 0.08
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (29 bp):
TTTATTTTTTTATTTTATTTAGTATTATA
Found at i:47052367 original size:17 final size:16
Alignment explanation
Indices: 47052293--47052369 Score: 61
Period size: 17 Copynumber: 4.7 Consensus size: 16
47052283 TTATCCTTCC
47052293 TTTTTATT-TATTTATT
1 TTTTTATTAT-TTTATT
*
47052309 TTATTTATTATTATATT
1 TT-TTTATTATTTTATT
47052326 TATTTTATTATTGTTA--
1 T-TTTTATTATT-TTATT
**
47052342 TTAGTATTATATTTATT
1 TTTTTATTAT-TTTATT
47052359 TTTTTATTATT
1 TTTTTATTATT
47052370 AGAATTGTGT
Statistics
Matches: 48, Mismatches: 6, Indels: 14
0.71 0.09 0.21
Matches are distributed among these distances:
15 10 0.21
16 5 0.10
17 29 0.60
18 4 0.08
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.73
Consensus pattern (16 bp):
TTTTTATTATTTTATT
Found at i:47057090 original size:15 final size:15
Alignment explanation
Indices: 47057065--47057099 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
47057055 GACTCTATTT
*
47057065 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
47057079 TAATTAATATTAAGA
1 TAATTAATATTAAGA
47057094 TAATTA
1 TAATTA
47057100 TTAAAGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:47062879 original size:10 final size:9
Alignment explanation
Indices: 47062866--47062931 Score: 51
Period size: 10 Copynumber: 6.8 Consensus size: 9
47062856 AAAGCTAAAT
47062866 TGAGCTCGAA
1 TGAGCT-GAA
47062876 TGAGCTGAA
1 TGAGCTGAA
*
47062885 TTGAGCTTAAA
1 -TGAGC-TGAA
*
47062896 TGAGCTGAT
1 TGAGCTGAA
47062905 TGGAGCTGAAA
1 T-GAGCTG-AA
*
47062916 TGAGCTAAA
1 TGAGCTGAA
*
47062925 GGAGCTG
1 TGAGCTG
47062932 GAATTAAGCT
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
9 13 0.29
10 27 0.60
11 5 0.11
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24
Consensus pattern (9 bp):
TGAGCTGAA
Found at i:47062886 original size:20 final size:19
Alignment explanation
Indices: 47062858--47062921 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 19
47062848 GCTGGAAGAA
*
47062858 AGCTAAATTGAGCTCGAATG
1 AGCTGAATTGAGCT-GAATG
*
47062878 AGCTGAATTGAGCTTAAATG
1 AGCTGAATTGAGC-TGAATG
47062898 AGCTG-ATTGGAGCTGAAATG
1 AGCTGAATT-GAGCTG-AATG
47062918 AGCT
1 AGCT
47062922 AAAGGAGCTG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
19 4 0.11
20 33 0.87
21 1 0.03
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (19 bp):
AGCTGAATTGAGCTGAATG
Found at i:47065140 original size:18 final size:18
Alignment explanation
Indices: 47065119--47065153 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
47065109 TTTTTCTTTT
47065119 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
47065137 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
47065154 TTTCTTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:47065150 original size:6 final size:6
Alignment explanation
Indices: 47065141--47065237 Score: 59
Period size: 6 Copynumber: 15.7 Consensus size: 6
47065131 TCAATCTCAA
* * * ** **
47065141 TTTCTT TTTCAAT TTTCTT TTCATCAT TTTCTT TTTCTC TCACTT TTTCGA
1 TTTCTT TTTC-TT TTTCTT TT--TCTT TTTCTT TTTCTT TTTCTT TTTCTT
* * ** *
47065192 TTTCTT ATTCTT TTGCAA TTTCTT TTTCTT TTTCGT TTTCTT TTTC
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTC
47065238 GATTTCATTA
Statistics
Matches: 64, Mismatches: 24, Indels: 6
0.68 0.26 0.06
Matches are distributed among these distances:
6 54 0.84
7 5 0.08
8 5 0.08
ACGTcount: A:0.09, C:0.20, G:0.03, T:0.68
Consensus pattern (6 bp):
TTTCTT
Found at i:47065236 original size:18 final size:18
Alignment explanation
Indices: 47065141--47065237 Score: 70
Period size: 18 Copynumber: 5.2 Consensus size: 18
47065131 TCAATCTCAA
47065141 TTTCTTTTTCAATTTTCTT
1 TTTCTTTTTC-ATTTTCTT
* * *
47065160 TTCATCATTTTCTTTTTCTC
1 TT--TCTTTTTCATTTTCTT
**
47065180 TCACTTTTTCGA-TTTCTT
1 TTTCTTTTTC-ATTTTCTT
* * *
47065198 ATTCTTTTGCAATTTCTT
1 TTTCTTTTTCATTTTCTT
*
47065216 TTTCTTTTTCGTTTTCTT
1 TTTCTTTTTCATTTTCTT
47065234 TTTC
1 TTTC
47065238 GATTTCATTA
Statistics
Matches: 58, Mismatches: 16, Indels: 9
0.70 0.19 0.11
Matches are distributed among these distances:
17 1 0.02
18 41 0.71
19 2 0.03
20 7 0.12
21 7 0.12
ACGTcount: A:0.09, C:0.20, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTCTTTTTCATTTTCTT
Found at i:47068374 original size:18 final size:18
Alignment explanation
Indices: 47068351--47068391 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
47068341 TTTATTGAAA
**
47068351 ATTTTAAAAATTTTATAT
1 ATTTTAAAAAGGTTATAT
47068369 ATTTTAAAAAGGTTATAT
1 ATTTTAAAAAGGTTATAT
47068387 ATTTT
1 ATTTT
47068392 TATTTTGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (18 bp):
ATTTTAAAAAGGTTATAT
Found at i:47069127 original size:21 final size:20
Alignment explanation
Indices: 47069093--47069152 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 20
47069083 ATAATTTTAA
*
47069093 ATTAAATAAATTAATAAAAAT
1 ATTAAA-AATTTAATAAAAAT
47069114 CA-TAAAAGATTTAA-AAAATAT
1 -ATTAAAA-ATTTAATAAAA-AT
47069135 ATTAAAAATTT-ATAAAAA
1 ATTAAAAATTTAATAAAAA
47069153 CCGGTTCACC
Statistics
Matches: 33, Mismatches: 1, Indels: 11
0.73 0.02 0.24
Matches are distributed among these distances:
19 2 0.06
20 14 0.42
21 16 0.48
22 1 0.03
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (20 bp):
ATTAAAAATTTAATAAAAAT
Found at i:47088077 original size:26 final size:25
Alignment explanation
Indices: 47088042--47088197 Score: 152
Period size: 28 Copynumber: 5.8 Consensus size: 25
47088032 CAATCTAAGC
47088042 AAGCCTTTGTGGCTATCTCTAAATGG
1 AAGCCTTTGTGGCTATCTCTAAA-GG
47088068 AAGCCTTTGTGGCTATCTCTGAAAGG
1 AAGCCTTTGTGGCTATCTCT-AAAGG
47088094 AAGCCTTTGTGGCTATCTCTGTTAAAGG
1 AAGCCTTTGTGGCTATCTC---TAAAGG
* * *
47088122 AAG-TTTTCGTGGCTATCTTTGTAAAAGT
1 AAGCCTTT-GTGGCTATC--TCT-AAAGG
* *
47088150 AAGCCTTTATGGCTATCACTATTAAAGG
1 AAGCCTTTGTGGCTAT--CT-CTAAAGG
47088178 AAGCCTTTGTGGCTATCTCT
1 AAGCCTTTGTGGCTATCTCT
47088198 GTTAAAAAAT
Statistics
Matches: 109, Mismatches: 9, Indels: 25
0.76 0.06 0.17
Matches are distributed among these distances:
25 1 0.01
26 43 0.39
27 7 0.06
28 51 0.47
29 5 0.05
30 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (25 bp):
AAGCCTTTGTGGCTATCTCTAAAGG
Found at i:47088133 original size:28 final size:28
Alignment explanation
Indices: 47088042--47088411 Score: 314
Period size: 29 Copynumber: 13.2 Consensus size: 28
47088032 CAATCTAAGC
47088042 AAGCCTTTGTGGCTATCTC---TAAATGG
1 AAGCCTTTGTGGCTATCTCTGTTAAA-GG
47088068 AAGCCTTTGTGGCTATCTCTG--AAAGG
1 AAGCCTTTGTGGCTATCTCTGTTAAAGG
47088094 AAGCCTTTGTGGCTATCTCTGTTAAAGG
1 AAGCCTTTGTGGCTATCTCTGTTAAAGG
* * * *
47088122 AAG-TTTTCGTGGCTATCTTTGTAAAAGT
1 AAGCCTTT-GTGGCTATCTCTGTTAAAGG
* * *
47088150 AAGCCTTTATGGCTATCACTATTAAAGG
1 AAGCCTTTGTGGCTATCTCTGTTAAAGG
*
47088178 AAGCCTTTGTGGCTATCTCTGTTAAA-A
1 AAGCCTTTGTGGCTATCTCTGTTAAAGG
* *
47088205 AATCCTTTGTGGCTATCCCTG-TAAAGG
1 AAGCCTTTGTGGCTATCTCTGTTAAAGG
** *
47088232 AAAACTTTGTTGG-AATCTCTGTTATAAGG
1 AAGCCTTTG-TGGCTATCTCTGTTA-AAGG
47088261 AAGCCTTTGTGG-TGATCTCTGTTATAAGG
1 AAGCCTTTGTGGCT-ATCTCTGTTA-AAGG
* * *
47088290 AAGCCTTTGT-GATGACCTCTGTTATAACG
1 AAGCCTTTGTGGCT-ATCTCTGTTA-AAGG
* * *
47088319 AAGTCTTTATGGCTATCTCTGTTAAAAAG
1 AAGCCTTTGTGGCTATCTCTGTT-AAAGG
* * * *
47088348 ATGTCTTTGTGGCTATCTCAGTTAAATG
1 AAGCCTTTGTGGCTATCTCTGTTAAAGG
** *
47088376 AAGACC-TTGTGGAAATCTTTGTTAAAAGG
1 AAG-CCTTTGTGGCTATCTCTGTT-AAAGG
*
47088405 ATGCCTT
1 AAGCCTT
47088412 CCTGGCGAGA
Statistics
Matches: 283, Mismatches: 44, Indels: 31
0.79 0.12 0.09
Matches are distributed among these distances:
26 46 0.16
27 38 0.13
28 95 0.34
29 101 0.36
30 3 0.01
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (28 bp):
AAGCCTTTGTGGCTATCTCTGTTAAAGG
Found at i:47088271 original size:83 final size:83
Alignment explanation
Indices: 47088089--47088284 Score: 213
Period size: 83 Copynumber: 2.3 Consensus size: 83
47088079 GCTATCTCTG
* ** * **
47088089 AAAGGAAGCCTTTGTGGCTATCTCTGTTAAAGGAAGTTTTCGTGGCTATCTTTGTAAAAGTAAGC
1 AAAGGAAGCCTTTGTGGCTATCTCTGTTAAA-GAAATTTTCGTGGCTATCCCTGTAAAAGGAAAA
*
47088154 CTTTATGGCTATCACTATT
65 CTTTATGGCAATCACTATT
47088173 AAAGGAAGCCTTTGTGGCTATCTCTGTTAAA-AAATCCTTT-GTGGCTATCCCTGT-AAAGGAAA
1 AAAGGAAGCCTTTGTGGCTATCTCTGTTAAAGAAAT--TTTCGTGGCTATCCCTGTAAAAGGAAA
* * *
47088235 ACTTTGTTGG-AATCTCTGTT
64 ACTTT-ATGGCAATCACTATT
47088255 ATAAGGAAGCCTTTGTGG-TGATCTCTGTTA
1 A-AAGGAAGCCTTTGTGGCT-ATCTCTGTTA
47088285 TAAGGAAGCC
Statistics
Matches: 97, Mismatches: 10, Indels: 11
0.82 0.08 0.09
Matches are distributed among these distances:
82 22 0.23
83 41 0.42
84 34 0.35
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (83 bp):
AAAGGAAGCCTTTGTGGCTATCTCTGTTAAAGAAATTTTCGTGGCTATCCCTGTAAAAGGAAAAC
TTTATGGCAATCACTATT
Found at i:47101644 original size:9 final size:9
Alignment explanation
Indices: 47101630--47101658 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
47101620 ACCTCACTTG
47101630 AAACCTTTA
1 AAACCTTTA
47101639 AAACCTTTA
1 AAACCTTTA
47101648 AAACCTTTA
1 AAACCTTTA
47101657 AA
1 AA
47101659 TTCGTATCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (9 bp):
AAACCTTTA
Found at i:47103635 original size:30 final size:30
Alignment explanation
Indices: 47103600--47103795 Score: 189
Period size: 30 Copynumber: 6.6 Consensus size: 30
47103590 GCATAATAGA
*
47103600 CAGATAGCTACAAAGGCGTCCACATAACAT
1 CAGATAGCCACAAAGGCGTCCACATAACAT
*
47103630 TAGATAGCCACAAAGGCGTCCACATAACAT
1 CAGATAGCCACAAAGGCGTCCACATAACAT
* * * * **
47103660 CAAATAGTCACGAAGGCATCCATGTAACAT
1 CAGATAGCCACAAAGGCGTCCACATAACAT
* * *
47103690 CAAATAGCCACAAAGGCATCCACACAACAT
1 CAGATAGCCACAAAGGCGTCCACATAACAT
* * * *
47103720 CAGATAGCCACGAAGGCTTCCACTTGAC-T
1 CAGATAGCCACAAAGGCGTCCACATAACAT
* * * *
47103749 TAGATAGCCACAAGGGCGTCCACAGAACTT
1 CAGATAGCCACAAAGGCGTCCACATAACAT
*
47103779 TA-AGTAGCCACAAAGGC
1 CAGA-TAGCCACAAAGGC
47103796 ACCTACTTAC
Statistics
Matches: 136, Mismatches: 28, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
29 23 0.17
30 113 0.83
ACGTcount: A:0.38, C:0.28, G:0.18, T:0.16
Consensus pattern (30 bp):
CAGATAGCCACAAAGGCGTCCACATAACAT
Found at i:47103676 original size:60 final size:60
Alignment explanation
Indices: 47103603--47103818 Score: 204
Period size: 60 Copynumber: 3.6 Consensus size: 60
47103593 TAATAGACAG
* * * *
47103603 ATAGCTACAAAGGCGTCCACATAACATTAGATAGCCACAAAGGCGTCCACATAACATCAA
1 ATAGCCACGAAGGCATCCACATAACATTAGATAGCCACAAAGGCGTCCACACAACATCAA
* ** * * * *
47103663 ATAGTCACGAAGGCATCCATGTAACATCAAATAGCCACAAAGGCATCCACACAACATCAG
1 ATAGCCACGAAGGCATCCACATAACATTAGATAGCCACAAAGGCGTCCACACAACATCAA
* * * * * * *
47103723 ATAGCCACGAAGGCTTCCACTTGAC-TTAGATAGCCACAAGGGCGTCCACAGAACTTTAA
1 ATAGCCACGAAGGCATCCACATAACATTAGATAGCCACAAAGGCGTCCACACAACATCAA
* * * *
47103782 GTAGCCACAAAGGCA-CCTAC-TTACATTAAATAGCCAC
1 ATAGCCACGAAGGCATCC-ACATAACATTAGATAGCCAC
47103819 CAAGTCATTC
Statistics
Matches: 125, Mismatches: 29, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
58 5 0.04
59 51 0.41
60 69 0.55
ACGTcount: A:0.38, C:0.28, G:0.16, T:0.18
Consensus pattern (60 bp):
ATAGCCACGAAGGCATCCACATAACATTAGATAGCCACAAAGGCGTCCACACAACATCAA
Found at i:47104314 original size:9 final size:9
Alignment explanation
Indices: 47104300--47104367 Score: 82
Period size: 9 Copynumber: 7.6 Consensus size: 9
47104290 TTTGGTTAAA
47104300 AATTAACTG
1 AATTAACTG
47104309 AATTAACTG
1 AATTAACTG
*
47104318 AATTACCTG
1 AATTAACTG
47104327 AATTAACTG
1 AATTAACTG
* *
47104336 AACTAACCG
1 AATTAACTG
*
47104345 AATTACCTG
1 AATTAACTG
* *
47104354 GATTACCTG
1 AATTAACTG
47104363 AATTA
1 AATTA
47104368 TATGTTTTTT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.31
Consensus pattern (9 bp):
AATTAACTG
Found at i:47104342 original size:27 final size:27
Alignment explanation
Indices: 47104300--47104364 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
47104290 TTTGGTTAAA
* *
47104300 AATTAACTGAATTAACTGAATTACCTG
1 AATTAACTGAACTAACCGAATTACCTG
47104327 AATTAACTGAACTAACCGAATTACCTG
1 AATTAACTGAACTAACCGAATTACCTG
* *
47104354 GATTACCTGAA
1 AATTAACTGAA
47104365 TTATATGTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.29
Consensus pattern (27 bp):
AATTAACTGAACTAACCGAATTACCTG
Found at i:47104397 original size:6 final size:6
Alignment explanation
Indices: 47104374--47104428 Score: 74
Period size: 6 Copynumber: 9.0 Consensus size: 6
47104364 ATTATATGTT
* * *
47104374 TTTTAT TTTTAG ACTTTAG TTTTAG TTTTAG TTGTAG TTTTAG TTTTAG
1 TTTTAG TTTTAG -TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG
47104423 TTTTAG
1 TTTTAG
47104429 AATTTTATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
6 38 0.88
7 5 0.12
ACGTcount: A:0.18, C:0.02, G:0.16, T:0.64
Consensus pattern (6 bp):
TTTTAG
Found at i:47104452 original size:20 final size:20
Alignment explanation
Indices: 47104393--47104441 Score: 66
Period size: 18 Copynumber: 2.5 Consensus size: 20
47104383 TAGACTTTAG
*
47104393 TTTTAGTTTTAGTTGTAG--
1 TTTTAGTTTTAGTTTTAGAA
47104411 TTTTAGTTTTAGTTTTAGAA
1 TTTTAGTTTTAGTTTTAGAA
*
47104431 TTTTATTTTTA
1 TTTTAGTTTTA
47104442 TTTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 17 0.63
20 10 0.37
ACGTcount: A:0.20, C:0.00, G:0.14, T:0.65
Consensus pattern (20 bp):
TTTTAGTTTTAGTTTTAGAA
Found at i:47109533 original size:21 final size:21
Alignment explanation
Indices: 47109507--47109563 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
47109497 TGTGGATGCC
*
47109507 ATAAAACAATTATTTTTTAAAA
1 ATAAAAAAATTA-TTTTTAAAA
* *
47109529 TAAAAAAAAACTATTTTTAAAA
1 -ATAAAAAAATTATTTTTAAAA
47109551 ATAAAAAAATTAT
1 ATAAAAAAATTAT
47109564 AACATATATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 11 0.38
22 9 0.31
23 9 0.31
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (21 bp):
ATAAAAAAATTATTTTTAAAA
Found at i:47113132 original size:14 final size:14
Alignment explanation
Indices: 47113113--47113139 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
47113103 CAATTTTAAC
47113113 AATAAAAATATTAT
1 AATAAAAATATTAT
47113127 AATAAAAATATTA
1 AATAAAAATATTA
47113140 AACTATTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AATAAAAATATTAT
Found at i:47126716 original size:18 final size:18
Alignment explanation
Indices: 47126693--47126727 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
47126683 ACGACGTGCC
47126693 AAACTACTTTT-ATGCTTG
1 AAACTA-TTTTAATGCTTG
47126711 AAACTATTTTAATGCTT
1 AAACTATTTTAATGCTT
47126728 CATGTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.46
Consensus pattern (18 bp):
AAACTATTTTAATGCTTG
Found at i:47134608 original size:40 final size:42
Alignment explanation
Indices: 47134463--47135056 Score: 281
Period size: 44 Copynumber: 13.8 Consensus size: 42
47134453 GTTTATTTAG
* * * *
47134463 TCTGCCCCACTGCAATTTCAGGG-GATAAGA-CTTGATTTCTTGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATC-TGATTGC---AA
* * **
47134507 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTCGCTTTCTTGGG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-GATTGC---AA
*
47134552 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGA-TGCGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATTGCAA
** * * **
47134593 TCTGCT-CTTTGCAACTTCAGAGAGATAAGATATGTGATTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAG--ATCTGATTGCAA
** *
47134636 TCCACTCCACTGCAACTTCAGGGAGATAGGAT-T-ATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATT-GC---AA
*
47134680 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGA-TGCGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATTGCAA
** * * **
47134721 TCTGCT-CTTTGCAACTTCAGAGAGATAAGATATGTGATTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAG--ATCTGATTGCAA
** *
47134764 TCCACTCCACTGCAACTTCAGGGAGATAGGAT-T-ATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATT-GC---AA
* * *
47134808 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGGCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TCTG-AT-TGCAA
* * * * * *
47134853 TCTGC-CTCACTACAATTTCA-GGAGGATAAG-GCTTGCTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGATC-TGATTGC--AA
* *
47134897 TCTGCTCCACTACAACTTCAGGGAGATAAGA-CTAGA-TGCGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-GATTGCAA
* * * **
47134938 TCTGGT-CTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATC--TGATTGCAA
* * * * *
47134981 TCCGCTCCACTACGACTTTAGGGAGATATGAT-T-ATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATT-GC---AA
* *
47135025 TCTGTTCCACTGTAACTTCAGGGAGATAAGAT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT
47135057 TCGTTATCTT
Statistics
Matches: 424, Mismatches: 82, Indels: 88
0.71 0.14 0.15
Matches are distributed among these distances:
40 70 0.17
41 23 0.05
42 18 0.04
43 24 0.06
44 203 0.48
45 79 0.19
46 3 0.01
48 3 0.01
49 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (42 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATTGCAA
Found at i:47134713 original size:128 final size:128
Alignment explanation
Indices: 47134552--47134839 Score: 576
Period size: 128 Copynumber: 2.2 Consensus size: 128
47134542 CTTTCTTGGG
47134552 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATGCGATCTGCTCTTTGCAACTTCAGAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATGCGATCTGCTCTTTGCAACTTCAGAGAG
47134617 ATAAGATATGTGATTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
66 ATAAGATATGTGATTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
47134680 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATGCGATCTGCTCTTTGCAACTTCAGAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATGCGATCTGCTCTTTGCAACTTCAGAGAG
47134745 ATAAGATATGTGATTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
66 ATAAGATATGTGATTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
47134808 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT
47134840 TCGGCATCTT
Statistics
Matches: 160, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
128 160 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (128 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATGCGATCTGCTCTTTGCAACTTCAGAGAG
ATAAGATATGTGATTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
Found at i:47135047 original size:345 final size:345
Alignment explanation
Indices: 47134411--47135056 Score: 917
Period size: 345 Copynumber: 1.9 Consensus size: 345
47134401 ATTTTAGAGA
* * ** *
47134411 GATTCTAATCCACTCCACTACAACTTTAGGGAGATGGGATTTGTTTATTTAGTCTGCCCCACTGC
1 GATTCTAATCCACTCCACTACAACTTCAGGGAGATAGGATTTGTGGATTTAATCTGCCCCACTGC
* ** * *
47134476 AATTTCAGGGGATAAGACTTGATTTCTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTC
66 AACTTCAGGGGATAAGACTTGACATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTC
* * * *
47134541 GCTTTCTTGGGTCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATGCGATCTGCTCTTTGCA
131 GCTTACTTGAGTCTGCTCCACTACAACTTCAGGGAGATAAGATCTGATGCGATCTGCTCTCTGCA
*
47134606 ACTTCAGAGAGATAAGATATGTGATTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTAT
196 ACTTCAGAGAGATAAGATATGTGATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTAT
47134671 TGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATGCGATCTGCTCTTTGCAAC
261 TGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATGCGATCTGCTCTTTGCAAC
47134736 TTCAGAGAGATAAGATATGT
326 TTCAGAGAGATAAGATATGT
* * * *
47134756 GATTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTAT-TGGCTTTAATCTGCTCCACTG
1 GATTCTAATCCACTCCACTACAACTTCAGGGAGATAGGATT-TGTGGATTTAATCTGCCCCACTG
* *
47134820 CAACTTCAGGGAGATAAGA-TTCGGCATCTTCAGTCTGC-CTCACTACAATTTCA-GGAGGATAA
65 CAACTTCAGGG-GATAAGACTT-GACATCTTCAGTCTGCTC-CACTACAACTTCAGGGA-GATAA
* * *
47134882 GGCTTGCTTACTT-AGTCTGCTCCACTACAACTTCAGGGAGATAAGA-CTAGATGCGATCTGGTC
126 GACTCGCTTACTTGAGTCTGCTCCACTACAACTTCAGGGAGATAAGATCT-GATGCGATCTGCTC
* * * * *
47134945 TCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTACGACTTTAGGGAGATAT
190 TCTGCAACTTCAGAGAGATAAGATATGTGATTTTAATCCACTCCACTACAACTTCAGGGAGATAG
* *
47135010 GATTATTGGCTTTAATCTGTTCCACTGTAACTTCAGGGAGATAAGAT
255 GATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
47135057 TCGTTATCTT
Statistics
Matches: 264, Mismatches: 31, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
344 2 0.01
345 216 0.82
346 46 0.17
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (345 bp):
GATTCTAATCCACTCCACTACAACTTCAGGGAGATAGGATTTGTGGATTTAATCTGCCCCACTGC
AACTTCAGGGGATAAGACTTGACATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTC
GCTTACTTGAGTCTGCTCCACTACAACTTCAGGGAGATAAGATCTGATGCGATCTGCTCTCTGCA
ACTTCAGAGAGATAAGATATGTGATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTAT
TGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGATGCGATCTGCTCTTTGCAAC
TTCAGAGAGATAAGATATGT
Found at i:47135471 original size:44 final size:44
Alignment explanation
Indices: 47135421--47135524 Score: 131
Period size: 44 Copynumber: 2.4 Consensus size: 44
47135411 ACCTGCTATT
* *
47135421 TTCAACCTACTCCACTGTTG-CTCAAGGAGATAGGA-TTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAAGGAGATAGGACTT-ACAATC
* * *
47135465 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGACTTATAATC
1 TTCAACCTATTCCACTGCTGACCAAGGAGATAGGACTTACAATC
47135509 TTCAACCTATTCCACT
1 TTCAACCTATTCCACT
47135525 ACTGTCATGG
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
44 49 0.94
45 3 0.06
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACCAAGGAGATAGGACTTACAATC
Found at i:47135537 original size:44 final size:44
Alignment explanation
Indices: 47135446--47135542 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 44
47135436 TGTTGCTCAA
* *
47135446 GGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCAG
1 GGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAG
* *
47135490 GGAGATAGGACTT-ATAATCTTCAACCTATTCCACTACTG-TCATG
1 GGAGATAGGA-TTCACAATCTTCAACCTATTCCACTACTGACCA-G
47135534 GGAGATAGG
1 GGAGATAGG
47135543 GCTGGGGTCA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
43 2 0.04
44 43 0.91
45 2 0.04
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (44 bp):
GGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAG
Found at i:47135668 original size:88 final size:88
Alignment explanation
Indices: 47135542--47135943 Score: 525
Period size: 88 Copynumber: 4.6 Consensus size: 88
47135532 TGGGAGATAG
* * * * *
47135542 GGCTGGGGTCATCGATTTGCTTCGCTATCGGTGTAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* *
47135607 TTCACTACAACCCAGGGAGGCAA
66 TCCGCTACAACCCAGGGAGGCAA
* * * * * *
47135630 GACTGGTGTCTTCGATCTGCTTCGTTGTTGGTACAGGAAGGTAAGATTTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* *
47135695 TCTGCTACAATCCAGGGAGGCAA
66 TCCGCTACAACCCAGGGAGGCAA
* * *
47135718 GGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTTACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
*
47135783 TCCGCTGCAACCCAGGGAGGCAA
66 TCCGCTACAACCCAGGGAGGCAA
* * * * * * *
47135806 GGCTAGTGTCTTCGATCTGCTTCGCTGTCAGTGTAGGAAGACAAGATCTTCTATTTTTAGCCTAC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
47135871 TCCGCTACAACCCAGGGAGGCAA
66 TCCGCTACAACCCAGGGAGGCAA
* * * * *
47135894 GGTTGGTGTCTTCGATTTGCTTCGCTGTCGGTGCAAGAAGGAAAAATCTG
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
47135944 TTATCTTCAC
Statistics
Matches: 266, Mismatches: 48, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
88 266 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.29
Consensus pattern (88 bp):
GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
TCCGCTACAACCCAGGGAGGCAA
Found at i:47137164 original size:21 final size:23
Alignment explanation
Indices: 47137124--47137167 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
47137114 TCACCTTGGC
47137124 CTCTCCATTTTCTTTCTTCTTTT
1 CTCTCCATTTTCTTTCTTCTTTT
*
47137147 CTCTCTATTTT-TTT-TTCTTTT
1 CTCTCCATTTTCTTTCTTCTTTT
47137168 TTTTATATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 3 0.15
23 10 0.50
ACGTcount: A:0.05, C:0.25, G:0.00, T:0.70
Consensus pattern (23 bp):
CTCTCCATTTTCTTTCTTCTTTT
Found at i:47138163 original size:25 final size:26
Alignment explanation
Indices: 47138112--47138171 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
47138102 AAGAAAATCC
* **
47138112 AAAAGAATGAAAGAATAATTATTTCA
1 AAAAGAATGAAAAAATAATTAGGTCA
*
47138138 AAAAGAATGAAAAAAT-ATTGGGTCA
1 AAAAGAATGAAAAAATAATTAGGTCA
47138163 AAAATGAAT
1 AAAA-GAAT
47138172 TCAAAGATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 10 0.34
26 19 0.66
ACGTcount: A:0.58, C:0.03, G:0.15, T:0.23
Consensus pattern (26 bp):
AAAAGAATGAAAAAATAATTAGGTCA
Found at i:47142459 original size:15 final size:16
Alignment explanation
Indices: 47142433--47142464 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
47142423 TAAAATAATT
47142433 AATTTAATAATAAAAA
1 AATTTAATAATAAAAA
47142449 AATTTAA-AATAAAAA
1 AATTTAATAATAAAAA
47142464 A
1 A
47142465 TAGAGGATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
AATTTAATAATAAAAA
Found at i:47142901 original size:19 final size:19
Alignment explanation
Indices: 47142877--47142968 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
47142867 AATCATATCT
47142877 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
47142896 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
47142915 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* *
47142934 TCTAAGATTACAAATCATA
1 TCTAAGATTGCATATCATA
47142953 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
47142969 CTTGAAGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:47142926 original size:38 final size:38
Alignment explanation
Indices: 47142854--47142968 Score: 185
Period size: 38 Copynumber: 2.9 Consensus size: 38
47142844 AAATTAAATC
47142854 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC-AAATCATA---TCTAAGATTGCATATCATA
*
47142896 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTACAAATCATATCTAAGATTGCATATCATA
47142934 TCTAAGATTACAAATCATATCTAAGATTGCATATC
1 TCTAAGATTACAAATCATATCTAAGATTGCATATC
47142969 CTTGAAGATT
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
38 53 0.75
41 7 0.10
42 11 0.15
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.36
Consensus pattern (38 bp):
TCTAAGATTACAAATCATATCTAAGATTGCATATCATA
Found at i:47145764 original size:3 final size:3
Alignment explanation
Indices: 47145756--47145787 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
47145746 CTCTGTGGGA
47145756 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
47145788 GGGATCTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:47146667 original size:8 final size:8
Alignment explanation
Indices: 47146656--47146681 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
47146646 TAACTCAATA
47146656 AATTAAAT
1 AATTAAAT
47146664 AATTAAAT
1 AATTAAAT
47146672 AATTAAAT
1 AATTAAAT
47146680 AA
1 AA
47146682 AATTGAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (8 bp):
AATTAAAT
Found at i:47147411 original size:29 final size:30
Alignment explanation
Indices: 47147352--47147412 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
47147342 TGCCTTTGAA
* * *
47147352 AATATTAACAAAAAGAGACATCTAATTTTT
1 AATATTAACAAAAAGAGACAACCAAATTTT
*
47147382 AATATTTACAAAAAGAG-CAACCAAATTTT
1 AATATTAACAAAAAGAGACAACCAAATTTT
47147411 AA
1 AA
47147413 AAATAGTTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 11 0.41
30 16 0.59
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (30 bp):
AATATTAACAAAAAGAGACAACCAAATTTT
Found at i:47157738 original size:24 final size:24
Alignment explanation
Indices: 47157706--47157787 Score: 101
Period size: 24 Copynumber: 3.4 Consensus size: 24
47157696 ATTCCAACCC
* *
47157706 ACAGCTCGTGAGAGTAGACCGATT
1 ACAGCTCGTGAGAGCAGACCAATT
* *
47157730 ACAGCTCGTGGGAGCATACCAATT
1 ACAGCTCGTGAGAGCAGACCAATT
*
47157754 ACAGCTCGTGAGAGCATACCAATT
1 ACAGCTCGTGAGAGCAGACCAATT
*
47157778 CATAGCTCGT
1 -ACAGCTCGT
47157788 ATGAGCATAC
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 43 0.84
25 8 0.16
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.22
Consensus pattern (24 bp):
ACAGCTCGTGAGAGCAGACCAATT
Found at i:47157793 original size:25 final size:23
Alignment explanation
Indices: 47157706--47157797 Score: 94
Period size: 24 Copynumber: 3.8 Consensus size: 23
47157696 ATTCCAACCC
* * *
47157706 ACAGCTCGTGAGAGTAGACCGATT
1 ACAGCTCGT-AGAGCATACCAATT
*
47157730 ACAGCTCGTGGGAGCATACCAATT
1 ACAGCTCGT-AGAGCATACCAATT
47157754 ACAGCTCGTGAGAGCATACCAATT
1 ACAGCTCGT-AGAGCATACCAATT
*
47157778 CATAGCTCGTATGAGCATAC
1 -ACAGCTCGTA-GAGCATAC
47157798 ATGTACATGA
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
24 44 0.73
25 16 0.27
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (23 bp):
ACAGCTCGTAGAGCATACCAATT
Found at i:47178272 original size:6 final size:6
Alignment explanation
Indices: 47178255--47178288 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
47178245 TCCAGGTCAA
47178255 TTTCATT TTTCAT TTTCAT TTTCAT TTTCAT TTT
1 TTTCA-T TTTCAT TTTCAT TTTCAT TTTCAT TTT
47178289 ACAGAAAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 22 0.81
7 5 0.19
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTCAT
Found at i:47178339 original size:6 final size:6
Alignment explanation
Indices: 47178328--47178363 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
47178318 TTCATTTCCC
*
47178328 CATTTT CATTTT CATTTT CACTTT CATTTT CATTTT
1 CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT
47178364 GGAGAAAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.17, C:0.19, G:0.00, T:0.64
Consensus pattern (6 bp):
CATTTT
Found at i:47178382 original size:75 final size:77
Alignment explanation
Indices: 47178255--47178409 Score: 235
Period size: 75 Copynumber: 2.0 Consensus size: 77
47178245 TCCAGGTCAA
* *
47178255 TTTCATTTTTCATTTTCATTTTCATTTTCATTTTACAGAAAACCATATTCATTTCCAAATGATTT
1 TTTCATTTTTCATTTTCACTTTCATTTTCATTTTACAGAAAACCATAATCATTTCCAAATG-TTT
47178320 -C-ATTTCCCCAT
65 CCTATTTCCCCAT
**
47178331 TTTCA-TTTTCATTTTCACTTTCATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGTTTC
1 TTTCATTTTTCATTTTCACTTTCATTTTCATTTTACAGAAAACCATAATCATTTCCAAATGTTTC
*
47178395 CTATTTCTCCAT
66 CTATTTCCCCAT
47178407 TTT
1 TTT
47178410 ACCATTTATG
Statistics
Matches: 72, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
74 3 0.04
75 52 0.72
76 17 0.24
ACGTcount: A:0.25, C:0.21, G:0.04, T:0.50
Consensus pattern (77 bp):
TTTCATTTTTCATTTTCACTTTCATTTTCATTTTACAGAAAACCATAATCATTTCCAAATGTTTC
CTATTTCCCCAT
Found at i:47179711 original size:22 final size:22
Alignment explanation
Indices: 47179673--47179716 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
47179663 CTCAAAGTTG
47179673 CAACATTGGAGACCCAAAGTCA
1 CAACATTGGAGACCCAAAGTCA
*
47179695 CAACATTGG-GCCACCAAAGTCA
1 CAACATTGGAGAC-CCAAAGTCA
47179717 TGACATCCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 2 0.10
22 18 0.90
ACGTcount: A:0.39, C:0.30, G:0.18, T:0.14
Consensus pattern (22 bp):
CAACATTGGAGACCCAAAGTCA
Found at i:47192083 original size:45 final size:45
Alignment explanation
Indices: 47191946--47192064 Score: 220
Period size: 45 Copynumber: 2.6 Consensus size: 45
47191936 CATGATGGAA
47191946 ATGGCATAATGTCGAAAATAAATAAGACCATAGTTGAAAGACACT
1 ATGGCATAATGTCGAAAATAAATAAGACCATAGTTGAAAGACACT
*
47191991 ATGGCATAATGTCGAAAATAAAAAAGACCATAGTTGAAAGACACT
1 ATGGCATAATGTCGAAAATAAATAAGACCATAGTTGAAAGACACT
*
47192036 ATGGCATAATGTTGAAAATAAATAAGACC
1 ATGGCATAATGTCGAAAATAAATAAGACC
47192065 GTGGCTGAAA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 71 1.00
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.22
Consensus pattern (45 bp):
ATGGCATAATGTCGAAAATAAATAAGACCATAGTTGAAAGACACT
Found at i:47196867 original size:178 final size:179
Alignment explanation
Indices: 47196561--47196899 Score: 608
Period size: 178 Copynumber: 1.9 Consensus size: 179
47196551 TTGAGCCTAT
* *
47196561 TTTTTTTTGTATTTAAAATGAAGAATGGGGAAACCCCGCTCACCATTCAACTAAGAACTAGTTGG
1 TTTTTGTTGTATTTAAAATGAAGAATGGGGAAACCCCCCTCACCATTCAACTAAGAACTAGTTGG
* *
47196626 CCAGCTCCCCCATGGCCTCTATGTTCTTCTTTTTCCATTTTTTCTTGCATATTCTACATTTTCTC
66 CCAGCTCCCCCATGGCCTCTATATTCTTCTTTTTCCATTTTCTCTTGCATATTCTACATTTTCTC
47196691 TAAAAAATGCCATAATCCACCTTCAAGTTTTCCATTTTCTCTATATTCA
131 TAAAAAATGCCATAATCCACCTTCAAGTTTTCCATTTTCTCTATATTCA
*
47196740 TTTTTGTTGTATTTAAAATGAAGAATGGGG-AACCCCCCTCACCATTCAGCTAAGAACTAGTTGG
1 TTTTTGTTGTATTTAAAATGAAGAATGGGGAAACCCCCCTCACCATTCAACTAAGAACTAGTTGG
* *
47196804 CCAGCTCCCCCATGGCCTCTATATTCTTCTTTTTTCATTTTCTCTTGCATATTCTCCATTTTCTC
66 CCAGCTCCCCCATGGCCTCTATATTCTTCTTTTTCCATTTTCTCTTGCATATTCTACATTTTCTC
47196869 TAAAAAATGCCATAATCCACCTTCAAGTTTT
131 TAAAAAATGCCATAATCCACCTTCAAGTTTT
47196900 GATGAAATCA
Statistics
Matches: 153, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
178 124 0.81
179 29 0.19
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.39
Consensus pattern (179 bp):
TTTTTGTTGTATTTAAAATGAAGAATGGGGAAACCCCCCTCACCATTCAACTAAGAACTAGTTGG
CCAGCTCCCCCATGGCCTCTATATTCTTCTTTTTCCATTTTCTCTTGCATATTCTACATTTTCTC
TAAAAAATGCCATAATCCACCTTCAAGTTTTCCATTTTCTCTATATTCA
Found at i:47200122 original size:51 final size:50
Alignment explanation
Indices: 47200063--47200248 Score: 205
Period size: 51 Copynumber: 3.7 Consensus size: 50
47200053 CTGGTTCACA
*
47200063 TAGTAGCCTACACATAGTACTACACATGTGACCATCA-CTATCCGATACACG
1 TAGTAGCCTACACATAGTACTACACATGTGACCA--AGCTATCCGGTACACG
* * * * * *
47200114 TAGTAGCCTGCACATAGTACTAAACACGTGATCGAAGCTATCCGGTACGCA
1 TAGTAGCCTACACATAGTACTACACATGTGA-CCAAGCTATCCGGTACACG
* * * *
47200165 TAGTAGCC-AGCACATAGTACTACACATGCGACCAATCTTTCTGGTACACG
1 TAGTAGCCTA-CACATAGTACTACACATGTGACCAAGCTATCCGGTACACG
* *
47200215 TAGTAGCCTGCACATAGTACTACACAAGTGACCA
1 TAGTAGCCTACACATAGTACTACACATGTGACCA
47200249 TCACTTTCAC
Statistics
Matches: 111, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
50 44 0.40
51 65 0.59
52 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (50 bp):
TAGTAGCCTACACATAGTACTACACATGTGACCAAGCTATCCGGTACACG
Found at i:47200269 original size:101 final size:101
Alignment explanation
Indices: 47200055--47200245 Score: 260
Period size: 101 Copynumber: 1.9 Consensus size: 101
47200045 TAATGATACT
*
47200055 GGTTCACATAGTAGCCTACACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAG
1 GGTTCACATAGTAGCCTACACATAGTACTACACATGCGACCAT-ACTATCCGATACACGTAGTAG
* *
47200120 CCTGCACATAGTACTAAACACGTGATCGAAGCTATCC
65 CCTGCACATAGTACTAAACAAGTGATCCAAGCTATCC
* * * * *
47200157 GGTACGCATAGTAGCC-AGCACATAGTACTACACATGCGACCA-ATCTTTCTGGTACACGTAGTA
1 GGTTCACATAGTAGCCTA-CACATAGTACTACACATGCGACCATA-CTATCCGATACACGTAGTA
*
47200220 GCCTGCACATAGTACTACACAAGTGA
64 GCCTGCACATAGTACTAAACAAGTGA
47200246 CCATCACTTT
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
100 1 0.01
101 41 0.52
102 37 0.47
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (101 bp):
GGTTCACATAGTAGCCTACACATAGTACTACACATGCGACCATACTATCCGATACACGTAGTAGC
CTGCACATAGTACTAAACAAGTGATCCAAGCTATCC
Found at i:47206807 original size:15 final size:15
Alignment explanation
Indices: 47206787--47206817 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
47206777 AAAAAAACAT
47206787 AACTCTTAACCTTTC
1 AACTCTTAACCTTTC
*
47206802 AACTCTTGACCTTTC
1 AACTCTTAACCTTTC
47206817 A
1 A
47206818 CTTACATAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.32, G:0.03, T:0.39
Consensus pattern (15 bp):
AACTCTTAACCTTTC
Found at i:47216093 original size:45 final size:45
Alignment explanation
Indices: 47216029--47216118 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
47216019 AACTGAGCAC
* *
47216029 TCTTTCTCTTAATTCGACAACCTTTCTGCATTTACAATTTATGCT
1 TCTTTCCCTTAATTCGACAACCTTTCCGCATTTACAATTTATGCT
47216074 TCTTTCCCTTAATTCGACAACCTTTCCGCATTTACAATTTATGCT
1 TCTTTCCCTTAATTCGACAACCTTTCCGCATTTACAATTTATGCT
47216119 GCATTTTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.22, C:0.27, G:0.07, T:0.44
Consensus pattern (45 bp):
TCTTTCCCTTAATTCGACAACCTTTCCGCATTTACAATTTATGCT
Found at i:47225959 original size:17 final size:16
Alignment explanation
Indices: 47225912--47225960 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
47225902 ACCTTTTATT
47225912 ATAATC-TATAAAATA
1 ATAATCTTATAAAATA
*
47225927 ATAATGTTATACAAATA
1 ATAATCTTATA-AAATA
*
47225944 CTAATACTTATAAAATA
1 ATAAT-CTTATAAAATA
47225961 TATTATTTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 5 0.18
16 4 0.14
17 14 0.50
18 5 0.18
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.35
Consensus pattern (16 bp):
ATAATCTTATAAAATA
Found at i:47226408 original size:241 final size:251
Alignment explanation
Indices: 47226062--47226612 Score: 687
Period size: 241 Copynumber: 2.2 Consensus size: 251
47226052 CCAAGTCGCT
** * * * * *
47226062 ATACTTTTCTTACATTTAAAAGTTAGCCCTCCTATTATATTATATGATGTTATATCATATCATAT
1 ATACTTTTCAGACATATGAAAGTTAGCCCTCCTACTATATTA-ATAATGTTATATAATATCATAT
* * *
47226127 AATATATAATATATTAATATTTTATATATATGCCTCAATGATTAGACATTATAATATCATGTAAT
65 AATATATAATATATTAATAGTTTATATATATGCATCAATGATTAAACATTATAATATCATGTAAT
** * * *
47226192 ACTATGTC-TTTTATTATAATATATGATATAATATTAGTTATATATAATAGTAGTAC-GT-TA-T
130 ACTATACCTTTTTATTATAATATATAATATAATAATAGTTATATATAAAAGTAGTACAGTATATT
* * * *
47226253 -ATATTA-AT-TATTA-TG-TT-TTATTATATTGGTTGAAATATG-TTTTAAGTCCTTC
195 AATATTACATATATTATTGTTTATTATTAAACTAGTTGAAATATGCTCTT-AGTCC-TC
*
47226305 -TACTTTTTAGACATATGAAAGTTAGCCCTCCTACTATATTAATAATGTTATATAATATCATATA
1 ATACTTTTCAGACATATGAAAGTTAGCCCTCCTACTATATTAATAATGTTATATAATATCATATA
* *
47226369 GTATATAATATATTGATAGTTTATATATATGCATCAATGATTAAACATTATAATATCATGTAATA
66 ATATATAATATATTAATAGTTTATATATATGCATCAATGATTAAACATTATAATATCATGTAATA
* *
47226434 TTATACCTTTTTATTATAATCTATAATATAATAATAGTTATATATAAAAGTAGTACAATGTATAT
131 CTATACCTTTTTATTATAATATATAATATAATAATAGTTATATATAAAAGTAGTAC-A-GTATAT
* *
47226499 TACATATTACTATATATTATTGTTTATTATTAAACTATTTGAAATATGCTCTTAGTTCTC
194 TA-ATATTAC-ATATATTATTGTTTATTATTAAACTAGTTGAAATATGCTCTTAGTCCTC
* * *
47226559 ATACTTTTCATACATTTGAAAGTTAGCTCTCCTACTATATTAATAAT-TTATATA
1 ATACTTTTCAGACATATGAAAGTTAGCCCTCCTACTATATTAATAATGTTATATA
47226613 TGTGTATCAA
Statistics
Matches: 262, Mismatches: 30, Indels: 21
0.84 0.10 0.07
Matches are distributed among these distances:
241 85 0.32
242 79 0.30
245 2 0.01
246 2 0.01
247 1 0.00
249 6 0.02
251 2 0.01
252 5 0.02
253 2 0.01
254 11 0.04
255 64 0.24
256 3 0.01
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.46
Consensus pattern (251 bp):
ATACTTTTCAGACATATGAAAGTTAGCCCTCCTACTATATTAATAATGTTATATAATATCATATA
ATATATAATATATTAATAGTTTATATATATGCATCAATGATTAAACATTATAATATCATGTAATA
CTATACCTTTTTATTATAATATATAATATAATAATAGTTATATATAAAAGTAGTACAGTATATTA
ATATTACATATATTATTGTTTATTATTAAACTAGTTGAAATATGCTCTTAGTCCTC
Found at i:47228403 original size:27 final size:27
Alignment explanation
Indices: 47228372--47228443 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 27
47228362 TCGAAATTCA
47228372 TACATTAATTTTAAAATAATT-AATTT
1 TACATTAATTTTAAAATAATTGAATTT
*
47228398 TCACATAAATTATTAAAAT-ATTGAATTT
1 T-ACATTAATT-TTAAAATAATTGAATTT
* *
47228426 TA-ATTATTTTTATAATAA
1 TACATTAATTTTAAAATAA
47228444 ATTTTCATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
25 6 0.16
26 7 0.18
27 12 0.32
28 13 0.34
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (27 bp):
TACATTAATTTTAAAATAATTGAATTT
Found at i:47239012 original size:19 final size:19
Alignment explanation
Indices: 47238988--47239029 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
47238978 TAAGTGCAAT
47238988 TGTATACATGTAATAAATG
1 TGTATACATGTAATAAATG
47239007 TGTATACATGTAATAAATG
1 TGTATACATGTAATAAATG
47239026 TGTA
1 TGTA
47239030 ATATATATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.40, C:0.05, G:0.17, T:0.38
Consensus pattern (19 bp):
TGTATACATGTAATAAATG
Found at i:47242921 original size:20 final size:20
Alignment explanation
Indices: 47242898--47242936 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
47242888 CGTTCTGCGG
47242898 TAATGGCTGCA-AGAAAATTC
1 TAAT-GCTGCACAGAAAATTC
*
47242918 TAATGTTGCACAGAAAATT
1 TAATGCTGCACAGAAAATT
47242937 TATCACAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (20 bp):
TAATGCTGCACAGAAAATTC
Found at i:47251305 original size:19 final size:20
Alignment explanation
Indices: 47251277--47251314 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
47251267 GATCATGTTA
47251277 ATGCACATTTTGT-AAAACG
1 ATGCACATTTTGTGAAAACG
*
47251296 ATGCAGATTTTGTGAAAAC
1 ATGCACATTTTGTGAAAAC
47251315 AGTCCTACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (20 bp):
ATGCACATTTTGTGAAAACG
Found at i:47252453 original size:12 final size:13
Alignment explanation
Indices: 47252434--47252465 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
47252424 AAAAGAGGAG
47252434 AAAA-GAGAAG-A
1 AAAATGAGAAGAA
47252445 AAAATGAGAAGAA
1 AAAATGAGAAGAA
47252458 AAAATGAG
1 AAAATGAG
47252466 TATTAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 4 0.21
12 6 0.32
13 9 0.47
ACGTcount: A:0.69, C:0.00, G:0.25, T:0.06
Consensus pattern (13 bp):
AAAATGAGAAGAA
Found at i:47254188 original size:25 final size:25
Alignment explanation
Indices: 47254134--47254180 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
47254124 AAGATACTCC
*
47254134 TATATCATATAATGCTATGTTATAT
1 TATATCATATAATGATATGTTATAT
*
47254159 CATATCATATAAT-ATAT-TTATA
1 TATATCATATAATGATATGTTATA
47254181 GTTTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 3 0.15
25 12 0.60
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (25 bp):
TATATCATATAATGATATGTTATAT
Found at i:47262868 original size:61 final size:60
Alignment explanation
Indices: 47262765--47262921 Score: 156
Period size: 61 Copynumber: 2.6 Consensus size: 60
47262755 AAAAGTCATA
* * * *** * *
47262765 TTTAAGTACCAATTTGAACCA-AAAACTCAAGTTTAGGTATCTAATTATATAAAAGAAAAAC
1 TTTAAGTACCAAATTGAACCATAAAGC-CAAGTTCAAACATCTAATTAGACAAAA-AAAAAC
* * **
47262826 TTTAAGTACCAAATTGGA-CATTAAAGCCAAGTTCAAACATCTAATTGGACAAAAAAAATG
1 TTTAAGTACCAAATTGAACCA-TAAAGCCAAGTTCAAACATCTAATTAGACAAAAAAAAAC
*
47262886 TTTAGGTACCAAATTGAACCATAAAGCCAAGTTCAA
1 TTTAAGTACCAAATTGAACCATAAAGCCAAGTTCAA
47262922 GTATCAAAAT
Statistics
Matches: 79, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
60 37 0.47
61 38 0.48
62 4 0.05
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.27
Consensus pattern (60 bp):
TTTAAGTACCAAATTGAACCATAAAGCCAAGTTCAAACATCTAATTAGACAAAAAAAAAC
Found at i:47263125 original size:17 final size:18
Alignment explanation
Indices: 47263093--47263126 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
47263083 AGAAATTATG
47263093 ATAATTACATATTTAAAA
1 ATAATTACATATTTAAAA
47263111 ATAATTACA-ATTTAAA
1 ATAATTACATATTTAAA
47263127 TTACAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAATTACATATTTAAAA
Found at i:47263531 original size:31 final size:31
Alignment explanation
Indices: 47263493--47263569 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
47263483 TGAGAAGCCC
*
47263493 TTATTTGAGTACTTTCAAAAAAGTTTGGCTT
1 TTATTTGAGCACTTTCAAAAAAGTTTGGCTT
** **
47263524 TTATTTGAGCACTTTCAAAAACTTTTGGCCC
1 TTATTTGAGCACTTTCAAAAAAGTTTGGCTT
47263555 TTATTTGAGCACTTT
1 TTATTTGAGCACTTT
47263570 GAAAGGTTTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (31 bp):
TTATTTGAGCACTTTCAAAAAAGTTTGGCTT
Found at i:47265230 original size:16 final size:17
Alignment explanation
Indices: 47265211--47265244 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
47265201 TATTTTTATT
*
47265211 TTTAA-AAATATTTAAA
1 TTTAATAAATATTGAAA
47265227 TTTAATAAATATTGAAA
1 TTTAATAAATATTGAAA
47265244 T
1 T
47265245 AAAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
TTTAATAAATATTGAAA
Found at i:47265400 original size:16 final size:17
Alignment explanation
Indices: 47265364--47265400 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
47265354 AATTTTATTT
*
47265364 TAATAATAAATTTTAAA
1 TAATAATAAATTTGAAA
47265381 -AATAAT-AATTTGAAA
1 TAATAATAAATTTGAAA
47265396 TAATA
1 TAATA
47265401 TTCTTCATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
TAATAATAAATTTGAAA
Found at i:47267906 original size:24 final size:24
Alignment explanation
Indices: 47267874--47267923 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
47267864 TGTAATATGG
47267874 TTGCCTGGAATTCTTTTAGATGAT
1 TTGCCTGGAATTCTTTTAGATGAT
47267898 TTGCCTGGAATTCTTTTAGATGAT
1 TTGCCTGGAATTCTTTTAGATGAT
47267922 TT
1 TT
47267924 AGAATGTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.12, G:0.20, T:0.48
Consensus pattern (24 bp):
TTGCCTGGAATTCTTTTAGATGAT
Found at i:47270505 original size:24 final size:26
Alignment explanation
Indices: 47270478--47270532 Score: 96
Period size: 24 Copynumber: 2.2 Consensus size: 26
47270468 TTTGAACTTG
47270478 CCATTGATGAATGCTAGGTGTT-TT-
1 CCATTGATGAATGCTAGGTGTTCTTA
47270502 CCATTGATGAATGCTAGGTGTTCTTA
1 CCATTGATGAATGCTAGGTGTTCTTA
47270528 CCATT
1 CCATT
47270533 AAATGATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 22 0.76
25 2 0.07
26 5 0.17
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (26 bp):
CCATTGATGAATGCTAGGTGTTCTTA
Found at i:47272790 original size:21 final size:21
Alignment explanation
Indices: 47272766--47272871 Score: 79
Period size: 21 Copynumber: 5.0 Consensus size: 21
47272756 TATTAACTCA
47272766 TATGAGCTTCTGTTTAACCTT
1 TATGAGCTTCTGTTTAACCTT
* * * *
47272787 TATGGGTTTCCGTTT-AGCTCT
1 TATGAGCTTCTGTTTAACCT-T
* * *
47272808 TATGAGCTTCCGTTCAACCCT
1 TATGAGCTTCTGTTTAACCTT
* * * *
47272829 TATGGGTTTCTATTTAACATT
1 TATGAGCTTCTGTTTAACCTT
* *
47272850 TATGAGCTTCTGTGTAGCCTT
1 TATGAGCTTCTGTTTAACCTT
47272871 T
1 T
47272872 GGGCTTCTGA
Statistics
Matches: 61, Mismatches: 22, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
20 3 0.05
21 56 0.92
22 2 0.03
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.45
Consensus pattern (21 bp):
TATGAGCTTCTGTTTAACCTT
Found at i:47272813 original size:42 final size:42
Alignment explanation
Indices: 47272766--47272871 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 42
47272756 TATTAACTCA
* *
47272766 TATGAGCTTCTGTTTAACCTTTATGGGTTTCCGTTTAGC-TCT
1 TATGAGCTTCTGTTTAACCTTTATGGGTTTCCATTTAACAT-T
* * * *
47272808 TATGAGCTTCCGTTCAACCCTTATGGGTTTCTATTTAACATT
1 TATGAGCTTCTGTTTAACCTTTATGGGTTTCCATTTAACATT
* *
47272850 TATGAGCTTCTGTGTAGCCTTT
1 TATGAGCTTCTGTTTAACCTTT
47272872 GGGCTTCTGA
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 51 0.98
43 1 0.02
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.45
Consensus pattern (42 bp):
TATGAGCTTCTGTTTAACCTTTATGGGTTTCCATTTAACATT
Found at i:47279759 original size:17 final size:17
Alignment explanation
Indices: 47279737--47279795 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
47279727 ATATTTAGAT
47279737 AAAATATTAATTGAGAA
1 AAAATATTAATTGAGAA
* *
47279754 AAAATAGCTTATTTGGTAGACT
1 AAAATA--TTAATT-G-AGA-A
47279776 AAAATATTAATTGAGAA
1 AAAATATTAATTGAGAA
47279793 AAA
1 AAA
47279796 TAGCTTATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
17 9 0.27
18 3 0.09
19 6 0.18
20 6 0.18
21 3 0.09
22 6 0.18
ACGTcount: A:0.53, C:0.03, G:0.14, T:0.31
Consensus pattern (17 bp):
AAAATATTAATTGAGAA
Found at i:47279804 original size:38 final size:38
Alignment explanation
Indices: 47279732--47279805 Score: 132
Period size: 38 Copynumber: 1.9 Consensus size: 38
47279722 CTAGAATATT
47279732 TAGATAAAATATTAATTGAGAAAAAATAGCTTATTTGG
1 TAGATAAAATATTAATTGAGAAAAAATAGCTTATTTGG
47279770 TAGACTAAAATATTAATTGAG-AAAAATAGCTTATTT
1 TAGA-TAAAATATTAATTGAGAAAAAATAGCTTATTT
47279806 TAATATTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 19 0.54
39 16 0.46
ACGTcount: A:0.47, C:0.04, G:0.14, T:0.35
Consensus pattern (38 bp):
TAGATAAAATATTAATTGAGAAAAAATAGCTTATTTGG
Found at i:47280376 original size:21 final size:21
Alignment explanation
Indices: 47280350--47280418 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
47280340 CTGTTTAACC
*
47280350 CTTATGGGTTTCCGTTCAGCT
1 CTTATGGGTTTCCGTTCAGCA
* ** * *
47280371 CTTATGAGCCTCCGTTCAACC
1 CTTATGGGTTTCCGTTCAGCA
* *
47280392 CTTATGGGTTTCTGTTTAGCA
1 CTTATGGGTTTCCGTTCAGCA
47280413 CTTATG
1 CTTATG
47280419 TGCTTCTGTG
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.41
Consensus pattern (21 bp):
CTTATGGGTTTCCGTTCAGCA
Found at i:47280417 original size:42 final size:42
Alignment explanation
Indices: 47280300--47280418 Score: 139
Period size: 42 Copynumber: 2.8 Consensus size: 42
47280290 ATGAGTTTTT
* ** * * * *
47280300 GTTCAACCCTAATGGGTTTCCAATTAGCTCTTTTAAGCTTCT
1 GTTCAACCCTTATGGGTTTCCGTTTAGCTCTTATGAGCCTCC
* *
47280342 GTTTAACCCTTATGGGTTTCCGTTCAGCTCTTATGAGCCTCC
1 GTTCAACCCTTATGGGTTTCCGTTTAGCTCTTATGAGCCTCC
* *
47280384 GTTCAACCCTTATGGGTTTCTGTTTAGCACTTATG
1 GTTCAACCCTTATGGGTTTCCGTTTAGCTCTTATG
47280419 TGCTTCTGTG
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (42 bp):
GTTCAACCCTTATGGGTTTCCGTTTAGCTCTTATGAGCCTCC
Found at i:47280425 original size:21 final size:21
Alignment explanation
Indices: 47280392--47280432 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
47280382 CCGTTCAACC
* *
47280392 CTTATGGGTTTCTGTTTAGCA
1 CTTATGGGCTTCTGTGTAGCA
*
47280413 CTTATGTGCTTCTGTGTAGC
1 CTTATGGGCTTCTGTGTAGC
47280433 CCTCGGGCTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.17, G:0.24, T:0.46
Consensus pattern (21 bp):
CTTATGGGCTTCTGTGTAGCA
Found at i:47285929 original size:104 final size:105
Alignment explanation
Indices: 47285701--47285933 Score: 308
Period size: 104 Copynumber: 2.2 Consensus size: 105
47285691 GCTTGGGCAG
* * * * *
47285701 ACGCCCATGTCCTTACCCGTGTGGCTCACACGGCTTGGACACACACCTATGTCCTTTGCCCATGC
1 ACGCCCATGTCCTTACCCGTGTGACTCACACGGCCTGGACACACACCCATGTCCTCTGACCATGC
* * * *
47285766 GGTTCTCAAACATAAATAGTGAGTTACATGGCTTGGACAC
66 GGTTCTCAAACACAAATAGTGAGTTACACGGCCTAGACAC
* * *
47285806 ACGCCCATGTCCTTGCCCGTGTGACTCACATGGCCTGGACACACACCCATGTCC-CTGACCATGT
1 ACGCCCATGTCCTTACCCGTGTGACTCACACGGCCTGGACACACACCCATGTCCTCTGACCATGC
*
47285870 GGTTCT-AAGTCACAAATAGTGAGTTACACGGCCTAGACAC
66 GGTTCTCAA-ACACAAATAGTGAGTTACACGGCCTAGACAC
* *
47285910 ACGCCCGTGTCCTTTCCCGTGTGA
1 ACGCCCATGTCCTTACCCGTGTGA
47285934 ACCCTACACT
Statistics
Matches: 112, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
103 2 0.02
104 61 0.54
105 49 0.44
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.24
Consensus pattern (105 bp):
ACGCCCATGTCCTTACCCGTGTGACTCACACGGCCTGGACACACACCCATGTCCTCTGACCATGC
GGTTCTCAAACACAAATAGTGAGTTACACGGCCTAGACAC
Found at i:47286622 original size:16 final size:16
Alignment explanation
Indices: 47286584--47286623 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
47286574 ACAAAAATTA
47286584 AAAGAA-AAGAAAAAC
1 AAAGAAGAAGAAAAAC
*
47286599 AAATGAAGAAGAAAAAG
1 AAA-GAAGAAGAAAAAC
47286616 AAAGAAGA
1 AAAGAAGA
47286624 GGAACGAAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 8 0.36
17 11 0.50
ACGTcount: A:0.75, C:0.03, G:0.20, T:0.03
Consensus pattern (16 bp):
AAAGAAGAAGAAAAAC
Found at i:47292042 original size:27 final size:29
Alignment explanation
Indices: 47292000--47292053 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
47291990 TATTTTCAAT
* *
47292000 AATTAGTTGTCC-TTTTTGTAAATATTAA
1 AATTAGATGTCCTTTTTTATAAATATTAA
47292028 AATTAGATG-CCTTTTTTATAAATATT
1 AATTAGATGTCCTTTTTTATAAATATT
47292054 TTAGAACAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 2 0.09
28 21 0.91
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.50
Consensus pattern (29 bp):
AATTAGATGTCCTTTTTTATAAATATTAA
Found at i:47292290 original size:116 final size:118
Alignment explanation
Indices: 47292082--47292295 Score: 256
Period size: 116 Copynumber: 1.8 Consensus size: 118
47292072 AGGTTTTTAT
* * * * *
47292082 TTTTTATTTTTAATAAATAGGATTATAACAAATAATATATTATCATATATTATATATTATATGTT
1 TTTTTATTTCTAATAAATAAGATAATAACAAATAATATA-TATAATATATTATATATTATATATT
* * *
47292147 AATTGTTATTAACCTTGTATAGAATTA-GAATTGTTCATTATTTTACGTAAGAG
65 AATTGTTAGTAACATTATATAGAATTAGGAATTGTTCATTATTTTACGTAAGAG
*
47292200 TTTTTATTTCTAATTAAATAAGATAATAATAAATAATA-A-ATAATATATTATATATTATATATT
1 TTTTTATTTCTAA-TAAATAAGATAATAACAAATAATATATATAATATATTATATATTATATATT
* ** *
47292263 AATTTTTAGTGTCATTATATTA-CATTAGGAATT
65 AATTGTTAGTAACATTATA-TAGAATTAGGAATT
47292296 ATAATATTTT
Statistics
Matches: 80, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
116 39 0.49
117 7 0.09
118 13 0.16
119 21 0.26
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (118 bp):
TTTTTATTTCTAATAAATAAGATAATAACAAATAATATATATAATATATTATATATTATATATTA
ATTGTTAGTAACATTATATAGAATTAGGAATTGTTCATTATTTTACGTAAGAG
Found at i:47302975 original size:50 final size:50
Alignment explanation
Indices: 47302850--47303288 Score: 427
Period size: 50 Copynumber: 8.7 Consensus size: 50
47302840 GAATATAACA
* * * ** * * * *
47302850 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGAGATGTTTCTTGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
* * * ** *
47302899 TGCCAATGTCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
* * * *
47302949 TGCCTATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
* * * *
47302999 TGCCAACGTCATGTCCGAGACATGGTCTTACAT-AGGACCTCCCATCTCA-G
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGA-GACCTCTCATCT-AGG
* * * * * *
47303049 TGCCAACGCCATGTCCCAAACATGGTCTTAAATGGGACCTCTCATCTCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
* *
47303099 TGCCAATGCCATGTCCCAGACATGGTCTTACATG-GTACCTGTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAG-ACCTCTCATCTAGG
* * *
47303149 TGCCAACGCTATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
* * **
47303199 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAATCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTC---ATCT--A-GG
47303255 TGCCAATGCCATGTCCCAGACATGGTCTTACATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATG
47303289 GGATCTCTTT
Statistics
Matches: 323, Mismatches: 54, Indels: 19
0.82 0.14 0.05
Matches are distributed among these distances:
49 38 0.12
50 247 0.76
51 1 0.00
53 4 0.01
56 33 0.10
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
Found at i:47303108 original size:150 final size:152
Alignment explanation
Indices: 47302949--47303296 Score: 488
Period size: 150 Copynumber: 2.3 Consensus size: 152
47302939 CTCATATAGG
* * *
47302949 TGCCTATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTTGGTGCCAACG-TCATGT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCT-ATGT
*
47303013 CCGAGACATGGTCTTACAT-AGGACCTCCCATCTCAGTGCCAACGCCATGTCCCAAACATGGTCT
65 CCCAGACATGGTCTTACATGA-GACCTCCCATCTCAGTGCCAACGCCATGTCCCAAACATGGTCT
*
47303077 TAAATGGGACCTCTC-ATCTC-GA
129 TAAATGGGACCTCTCAATCTCAAA
* *
47303099 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGTACCTGTCATCTCGGTGCCAACGCTATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCTATGTC
* * * * *
47303164 CCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAATGCCATGTCCTAGACATGGTCTTA
66 CCAGACATGGTCTTACATGAGACCTCCCATCTCAGTGCCAACGCCATGTCCCAAACATGGTCTTA
*
47303229 CATGGGACCTCTCATAATCTCAATAA
131 AATGGGACCTCTC--AATCTC-A-AA
*
47303255 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
47303297 TTACCCAAAT
Statistics
Matches: 174, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
150 127 0.73
151 2 0.01
153 5 0.03
156 40 0.23
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (152 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCTATGTC
CCAGACATGGTCTTACATGAGACCTCCCATCTCAGTGCCAACGCCATGTCCCAAACATGGTCTTA
AATGGGACCTCTCAATCTCAAA
Found at i:47312020 original size:22 final size:22
Alignment explanation
Indices: 47311990--47312047 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
47311980 ATAAGTATGT
47311990 ATATATGTATATAAGTTATAAAA
1 ATATATGTATATAA-TTATAAAA
47312013 A-ATATGTACGTAT-ATTATAAAA
1 ATATATGTA--TATAATTATAAAA
*
47312035 ATGTATGTATATA
1 ATATATGTATATA
47312048 TATGTATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
21 3 0.10
22 16 0.53
23 8 0.27
24 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.40
Consensus pattern (22 bp):
ATATATGTATATAATTATAAAA
Found at i:47318389 original size:19 final size:18
Alignment explanation
Indices: 47318333--47318390 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 18
47318323 AGAATTGAAA
*
47318333 TACAACAGGAGCACATAAG
1 TACAACAGGGGCAC-TAAG
** *
47318352 TACGATGAGGGGTACTAAG
1 TAC-AACAGGGGCACTAAG
47318371 TACAACAGGGGCACGTAAG
1 TACAACAGGGGCAC-TAAG
47318390 T
1 T
47318391 GCGATCAGGA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
18 8 0.27
19 15 0.50
20 7 0.23
ACGTcount: A:0.38, C:0.17, G:0.29, T:0.16
Consensus pattern (18 bp):
TACAACAGGGGCACTAAG
Found at i:47318390 original size:38 final size:39
Alignment explanation
Indices: 47318333--47318415 Score: 105
Period size: 38 Copynumber: 2.2 Consensus size: 39
47318323 AGAATTGAAA
* * *
47318333 TACAACAGGAGCACATAAGTACGATGAGGGGTA-CTAAG
1 TACAACAGGAGCACATAAGTACGATCAGGAGTACCGAAG
* * *
47318371 TACAACAGGGGCACGTAAGTGCGATCAGGAGTACCGAAG
1 TACAACAGGAGCACATAAGTACGATCAGGAGTACCGAAG
47318410 TACAAC
1 TACAAC
47318416 CGTTTTCTAC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
38 28 0.74
39 10 0.26
ACGTcount: A:0.37, C:0.19, G:0.29, T:0.14
Consensus pattern (39 bp):
TACAACAGGAGCACATAAGTACGATCAGGAGTACCGAAG
Found at i:47319735 original size:12 final size:12
Alignment explanation
Indices: 47319718--47319744 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
47319708 CGTCGAACAA
47319718 TGGATTCTCACG
1 TGGATTCTCACG
47319730 TGGATTCTCACG
1 TGGATTCTCACG
47319742 TGG
1 TGG
47319745 TTGTAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.22, G:0.30, T:0.33
Consensus pattern (12 bp):
TGGATTCTCACG
Done.