Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 165 of 187
Found at i:50025953 original size:14 final size:14
Alignment explanation
Indices: 50025930--50025969 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
50025920 ACAGAAAAGT
*
50025930 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
50025944 AAATCATTTTACGG
1 AAAACATTTTACAG
50025958 AAAACATTTTAC
1 AAAACATTTTAC
50025970 TGCCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:50025955 original size:34 final size:35
Alignment explanation
Indices: 50025895--50025961 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
50025885 CAAACACCAG
* *
50025895 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
50025930 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
50025962 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:50033120 original size:64 final size:64
Alignment explanation
Indices: 50033052--50033393 Score: 170
Period size: 64 Copynumber: 5.2 Consensus size: 64
50033042 GTTAAGCTTC
50033052 GCTGATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAAAAATCTTATCTGAGTTA
1 GCTGATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAAAAATCTTATCTGAGTTA
* * * * * * *
50033116 GCTGATTTTATATCACTACTCTAAATAGCTCGTT-GATTTAATATTGCAGCTG--ATA-C-CAT-
1 GCTGATTTAATATCGCAAC-CT--A-AGTTCATTCGATTTAATA-T-CA--TGAAAAATCTTATC
*
50033175 TAAGGTTCA
58 TGA-GTT-A
* * ** ** *
50033184 -CTAATTTAATATCGCAACCTAAGTTCTTTTAATTTAATATCATGACCAATCTTATCTGAGTGA
1 GCTGATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAAAAATCTTATCTGAGTTA
* * * * * *
50033247 ACTGATTTAATATCGCTACTCTAA--ACAACTAGCTGATTTAATATC-TCAATTGATATCGTTA-
1 GCTGATTTAATATCGCAAC-CTAAGTTC-A-T-TC-GATTTAATATCATGAA---AAATC-TTAT
* *
50033308 -AG-GTTC
57 CTGAGTTA
* * * *
50033314 GCTGATTTAATATCACAACCTAAGTTCATTTGATTTAATATCATGAACAATATTATCTGAGTTA
1 GCTGATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAAAAATCTTATCTGAGTTA
*
50033378 GTTGATTTAATATCGC
1 GCTGATTTAATATCGC
50033394 TACTCTAAAC
Statistics
Matches: 198, Mismatches: 48, Indels: 64
0.64 0.15 0.21
Matches are distributed among these distances:
60 2 0.01
61 3 0.02
62 5 0.03
63 11 0.06
64 73 0.37
65 12 0.06
66 11 0.06
67 58 0.29
68 11 0.06
69 7 0.04
70 3 0.02
71 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (64 bp):
GCTGATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAAAAATCTTATCTGAGTTA
Found at i:50033196 original size:131 final size:131
Alignment explanation
Indices: 50032978--50033454 Score: 605
Period size: 131 Copynumber: 3.6 Consensus size: 131
50032968 TAATTATCTT
* * * * * *
50032978 TGAGCTAGCTGATTTAATACCGCTACTCTAAATAGCTCACTGATTTAATATCACAGCTAATAAT-
1 TGAGTTAGCTGATTTAATATCGCTACTCTAAACAGCTCGCTGATTTAATATCGCAGCTGAT-ATC
* * * * *
50033042 GTTAAGCTTCGCTGATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAAAAATCTTA
65 ATTAAGGTTCACTGATTTAATATCGCAACCTAAGTTCATTTGATTTAATATCATGAACAATCTTA
50033107 TC
130 TC
* * * * * *
50033109 TGAGTTAGCTGATTTTATATCACTACTCTAAATAGCTCGTTGATTTAATATTGCAGCTGATACCA
1 TGAGTTAGCTGATTTAATATCGCTACTCTAAACAGCTCGCTGATTTAATATCGCAGCTGATATCA
* * * *
50033174 TTAAGGTTCACTAATTTAATATCGCAACCTAAGTTCTTTTAATTTAATATCATGACCAATCTTAT
66 TTAAGGTTCACTGATTTAATATCGCAACCTAAGTTCATTTGATTTAATATCATGAACAATCTTAT
50033239 C
131 C
* * * * * ** *
50033240 TGAGTGAACTGATTTAATATCGCTACTCTAAACAACTAGCTGATTTAATATCTCAATTGATATCG
1 TGAGTTAGCTGATTTAATATCGCTACTCTAAACAGCTCGCTGATTTAATATCGCAGCTGATATCA
* * *
50033305 TTAAGGTTCGCTGATTTAATATCACAACCTAAGTTCATTTGATTTAATATCATGAACAATATTAT
66 TTAAGGTTCACTGATTTAATATCGCAACCTAAGTTCATTTGATTTAATATCATGAACAATCTTAT
50033370 C
131 C
* * * * *
50033371 TGAGTTAGTTGATTTAATATCGCTACTCTAAACAGCTTGTTGATTTAAGATCGTAGCTGATATCA
1 TGAGTTAGCTGATTTAATATCGCTACTCTAAACAGCTCGCTGATTTAATATCGCAGCTGATATCA
50033436 TTAAGGTTCACTGATTTAA
66 TTAAGGTTCACTGATTTAA
50033455 GACAACCTCT
Statistics
Matches: 292, Mismatches: 53, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
130 1 0.00
131 291 1.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (131 bp):
TGAGTTAGCTGATTTAATATCGCTACTCTAAACAGCTCGCTGATTTAATATCGCAGCTGATATCA
TTAAGGTTCACTGATTTAATATCGCAACCTAAGTTCATTTGATTTAATATCATGAACAATCTTAT
C
Found at i:50035969 original size:3 final size:3
Alignment explanation
Indices: 50035963--50035992 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
50035953 CTATTTTATT
50035963 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
50035993 TTTTATTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:50040274 original size:29 final size:30
Alignment explanation
Indices: 50040242--50040304 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
50040232 ATATAGTACA
50040242 AATTAGATATTTT-TTTTATAA-ATTAATAT
1 AATTAGATATTTTCTTTTATAATATTAA-AT
** *
50040271 AATTTTATGTTTTCTTTTATAATATTAAAT
1 AATTAGATATTTTCTTTTATAATATTAAAT
50040301 AATT
1 AATT
50040305 TTATACATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 10 0.34
30 14 0.48
31 5 0.17
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (30 bp):
AATTAGATATTTTCTTTTATAATATTAAAT
Found at i:50040291 original size:30 final size:29
Alignment explanation
Indices: 50040251--50040308 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
50040241 AAATTAGATA
50040251 TTTTTTTTATAA-ATTAATATAATTTTATG
1 TTTTTTTTATAATATTAA-ATAATTTTATG
50040280 TTTTCTTTTATAATATTAAATAATTTTAT
1 TTTT-TTTTATAATATTAAATAATTTTAT
50040309 ACATATTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 4 0.15
30 18 0.67
31 5 0.19
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (29 bp):
TTTTTTTTATAATATTAAATAATTTTATG
Found at i:50054717 original size:30 final size:31
Alignment explanation
Indices: 50054681--50054759 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 31
50054671 ACTTAACTAA
* * *
50054681 AAAAGTTATAATTT-GGTTATTGAACTATTC
1 AAAAGTTATAATTTAAGTCACTGAACTATTC
* *
50054711 AAAAGTTTTCATTTAAGTCACTGAACTATTC
1 AAAAGTTATAATTTAAGTCACTGAACTATTC
* *
50054742 AAAAGTTTTTATTTAAGT
1 AAAAGTTATAATTTAAGT
50054760 TATTGATTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 12 0.29
31 30 0.71
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (31 bp):
AAAAGTTATAATTTAAGTCACTGAACTATTC
Found at i:50054738 original size:31 final size:31
Alignment explanation
Indices: 50054701--50054759 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
50054691 ATTTGGTTAT
50054701 TGAACTATTCAAAAGTTTTCATTTAAGTCAC
1 TGAACTATTCAAAAGTTTTCATTTAAGTCAC
*
50054732 TGAACTATTCAAAAGTTTTTATTTAAGT
1 TGAACTATTCAAAAGTTTTCATTTAAGT
50054760 TATTGATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (31 bp):
TGAACTATTCAAAAGTTTTCATTTAAGTCAC
Found at i:50055887 original size:20 final size:21
Alignment explanation
Indices: 50055853--50055903 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
50055843 TTTTTAAAAA
** *
50055853 CTTTTTCCATTTTTTTC-TTT
1 CTTTTTCCAGGTTTTCCTTTT
50055873 CTTTTTCCAGGTTTTCCTTTT
1 CTTTTTCCAGGTTTTCCTTTT
50055894 CTTCTTTCCA
1 CTT-TTTCCA
50055904 ATTTCCATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 14 0.54
21 6 0.23
22 6 0.23
ACGTcount: A:0.06, C:0.25, G:0.04, T:0.65
Consensus pattern (21 bp):
CTTTTTCCAGGTTTTCCTTTT
Found at i:50058459 original size:17 final size:17
Alignment explanation
Indices: 50058433--50058472 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
50058423 TGTCTCTCTC
*
50058433 ACAATTTAAACATTCTT
1 ACAATGTAAACATTCTT
50058450 ACAATGTAAACATTCTT
1 ACAATGTAAACATTCTT
50058467 ACAATG
1 ACAATG
50058473 CGCTTATCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.05, T:0.35
Consensus pattern (17 bp):
ACAATGTAAACATTCTT
Found at i:50063179 original size:5 final size:5
Alignment explanation
Indices: 50063171--50063202 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
50063161 TTTCGGCTCA
50063171 TTTAT TTTAT TTTAT TTTAT TTTA- TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
50063203 TAAAGAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:50067747 original size:21 final size:22
Alignment explanation
Indices: 50067699--50067748 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 22
50067689 TGATAAAAGA
50067699 AATAAAAAAGTATTAAATTTAT
1 AATAAAAAAGTATTAAATTTAT
50067721 AA-AAAAAA-TATTAAATTT-T
1 AATAAAAAAGTATTAAATTTAT
*
50067740 AATTAAAAA
1 AATAAAAAA
50067749 TAAAAAATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 3 0.12
20 15 0.58
21 6 0.23
22 2 0.08
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (22 bp):
AATAAAAAAGTATTAAATTTAT
Found at i:50067793 original size:19 final size:18
Alignment explanation
Indices: 50067771--50067835 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 18
50067761 AAAAAACATA
50067771 AAAATCATTTAAAAATTAT
1 AAAAT-ATTTAAAAATTAT
* *
50067790 AAAAAATTGTAAAATTTTAT
1 AAAATATT-TAAAA-ATTAT
* *
50067810 AAAAATAGTAAAAAATTAT
1 -AAAATATTTAAAAATTAT
50067829 AAAATAT
1 AAAATAT
50067836 ATAGAAATAT
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
18 9 0.25
19 13 0.36
20 8 0.22
21 6 0.17
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.34
Consensus pattern (18 bp):
AAAATATTTAAAAATTAT
Found at i:50067794 original size:10 final size:10
Alignment explanation
Indices: 50067781--50067893 Score: 56
Period size: 10 Copynumber: 11.4 Consensus size: 10
50067771 AAAATCATTT
50067781 AAAAATTATA
1 AAAAATTATA
*
50067791 AAAAATTGTA
1 AAAAATTATA
**
50067801 AAATTTTAT-
1 AAAAATTATA
50067810 AAAAA-TAGTA
1 AAAAATTA-TA
50067820 AAAAATTATA
1 AAAAATTATA
*
50067830 AAATA-TATA
1 AAAAATTATA
* * *
50067839 GAAATATAGAAA
1 -AAAAAT-TATA
50067851 AAAAATTAT-
1 AAAAATTATA
*
50067860 -AAAATTTTA
1 AAAAATTATA
* * *
50067869 TAAAGTTGTA
1 AAAAATTATA
50067879 AGAAAATTATA
1 A-AAAATTATA
50067890 AAAA
1 AAAA
50067894 TGTAAAGAAA
Statistics
Matches: 76, Mismatches: 18, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
8 9 0.12
9 8 0.11
10 42 0.55
11 15 0.20
12 2 0.03
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
AAAAATTATA
Found at i:50067803 original size:29 final size:29
Alignment explanation
Indices: 50067780--50067892 Score: 115
Period size: 29 Copynumber: 3.8 Consensus size: 29
50067770 AAAAATCATT
*
50067780 TAAAAATTA-TAAAAAATTGTAAAATTTTA
1 TAAAAA-TAGTAAAAAATTATAAAATTTTA
*
50067809 TAAAAATAGTAAAAAATTATAAAA-TATA
1 TAAAAATAGTAAAAAATTATAAAATTTTA
*
50067837 TAGAAATATAGAAAAAAAATTATAAAATTTTA
1 TA-AAA-ATAG-TAAAAAATTATAAAATTTTA
* *
50067869 T-AAAGTTGTAAGAAAATTATAAAA
1 TAAAAATAGTAA-AAAATTATAAAA
50067893 ATGTAAAGAA
Statistics
Matches: 71, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
28 9 0.13
29 37 0.52
30 7 0.10
31 14 0.20
32 4 0.06
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (29 bp):
TAAAAATAGTAAAAAATTATAAAATTTTA
Found at i:50067885 original size:60 final size:61
Alignment explanation
Indices: 50067790--50067907 Score: 168
Period size: 60 Copynumber: 2.0 Consensus size: 61
50067780 TAAAAATTAT
* *
50067790 AAAAAATTGTAAAATTTTATAAAAATAGTAAAAAATTAT-AAAATATATAGAAATATAGAA
1 AAAAAATTATAAAATTTTATAAAAATAGTAAAAAATTATAAAAATATAAAGAAATATAGAA
* * *
50067850 AAAAAATTATAAAATTTTAT-AAAGTTGTAAGAAAATTATAAAAATGTAAAGAAATATA
1 AAAAAATTATAAAATTTTATAAAAATAGTAA-AAAATTATAAAAATATAAAGAAATATA
50067908 AAATTCATAA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
59 8 0.16
60 27 0.53
61 16 0.31
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (61 bp):
AAAAAATTATAAAATTTTATAAAAATAGTAAAAAATTATAAAAATATAAAGAAATATAGAA
Found at i:50068155 original size:28 final size:28
Alignment explanation
Indices: 50068102--50068158 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
50068092 TTTTTGATGC
* *
50068102 ATTTTATATTTTTTATGATTTTTATAAA
1 ATTTTATATTTTTTAAGATTTCTATAAA
50068130 ATTTTATATTTTTTACAG-TTTCTATAAA
1 ATTTTATATTTTTTA-AGATTTCTATAAA
50068158 A
1 A
50068159 AATTCTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 25 0.96
29 1 0.04
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.60
Consensus pattern (28 bp):
ATTTTATATTTTTTAAGATTTCTATAAA
Found at i:50069729 original size:20 final size:20
Alignment explanation
Indices: 50069706--50069746 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
50069696 ATTTAACAGA
50069706 AGAATTTTAATGATAATAGC
1 AGAATTTTAATGATAATAGC
50069726 AGAATTTTAATGATAATAGC
1 AGAATTTTAATGATAATAGC
50069746 A
1 A
50069747 ATTGAACTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.05, G:0.15, T:0.34
Consensus pattern (20 bp):
AGAATTTTAATGATAATAGC
Found at i:50081811 original size:27 final size:28
Alignment explanation
Indices: 50081761--50081814 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
50081751 TTATAGAAAA
* *
50081761 TATAAAAATTTATTGACAGTTAAATTAT
1 TATAAAAATTAATGGACAGTTAAATTAT
*
50081789 TATAAAAATTAATGGAGAG-TAAATTA
1 TATAAAAATTAATGGACAGTTAAATTA
50081815 CTGATATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.37
Consensus pattern (28 bp):
TATAAAAATTAATGGACAGTTAAATTAT
Found at i:50084567 original size:54 final size:54
Alignment explanation
Indices: 50084498--50084600 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 54
50084488 AAATTGGGAC
* * *
50084498 ACACGACTGTGTCCCAGCTCATGTCTCTGCCCATGTAACTCTCTGACTTGAGAT
1 ACACGACTGTATCCCAGCTCATGTCTCTGACCATGTAACTCACTGACTTGAGAT
* * *
50084552 ACACGGCTGTATCCCAGCTCGTGTCTCTGACCGTGTAACTCACTGACTT
1 ACACGACTGTATCCCAGCTCATGTCTCTGACCATGTAACTCACTGACTT
50084601 AGGTCACATA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.19, C:0.32, G:0.19, T:0.29
Consensus pattern (54 bp):
ACACGACTGTATCCCAGCTCATGTCTCTGACCATGTAACTCACTGACTTGAGAT
Found at i:50088646 original size:9 final size:9
Alignment explanation
Indices: 50088632--50088668 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
50088622 TGAGTTTTCG
50088632 AATTCGAAT
1 AATTCGAAT
50088641 AATTCGAAT
1 AATTCGAAT
50088650 AATTCGAAT
1 AATTCGAAT
50088659 AATTCGAAT
1 AATTCGAAT
50088668 A
1 A
50088669 TCAAACTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:50093548 original size:8 final size:8
Alignment explanation
Indices: 50093535--50093560 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
50093525 CAAGTTTTTC
50093535 ATCTATTT
1 ATCTATTT
50093543 ATCTATTT
1 ATCTATTT
50093551 ATCTATTT
1 ATCTATTT
50093559 AT
1 AT
50093561 TATATAAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.62
Consensus pattern (8 bp):
ATCTATTT
Found at i:50097480 original size:60 final size:60
Alignment explanation
Indices: 50097361--50097481 Score: 145
Period size: 60 Copynumber: 2.0 Consensus size: 60
50097351 ATCCTAAATC
* **
50097361 ACAAACAGTAAGGCACACGGCCTGGACACACGTCCGTGTCTCTGGCCTATGTGGCCTCTA
1 ACAAACAGTAAGGCACACGGCCTCGACACACGTCCGTGTCTCTGGCCTATGTAACCTCTA
* * * * * *
50097421 ACAAACAGTTAGTCATACGGCCTCGACACATG-CCTGTGTCTCTGGCCTGTGTAATCTCTA
1 ACAAACAGTAAGGCACACGGCCTCGACACACGTCC-GTGTCTCTGGCCTATGTAACCTCTA
50097481 A
1 A
50097482 ATCACAAATA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
59 2 0.04
60 49 0.96
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (60 bp):
ACAAACAGTAAGGCACACGGCCTCGACACACGTCCGTGTCTCTGGCCTATGTAACCTCTA
Found at i:50097513 original size:64 final size:63
Alignment explanation
Indices: 50097354--50097588 Score: 183
Period size: 64 Copynumber: 3.7 Consensus size: 63
50097344 CTGTGTGATC
* * * * * **
50097354 CTAAATCACAAACAGTAAGGCACACGGCCTGGACACACGTCCGTGTCTCTGGCCTATGTGGCCT
1 CTAAATCACAAACAGTTAGTCACACGGCCTAGACACATG-CCGTGTCTCTGGCCTGTGTAACCT
* * *
50097418 CT--A--ACAAACAGTTAGTCATACGGCCTCGACACATGCCTGTGTCTCTGGCCTGTGTAATCT
1 CTAAATCACAAACAGTTAGTCACACGGCCTAGACACATGCC-GTGTCTCTGGCCTGTGTAACCT
* * * * * * *
50097478 CTAAATCACAAATAGTTAGTCACACAGCCTAGACACACAT-CCATGTATCTGGCCCGTATAGCCT
1 CTAAATCACAAACAGTTAGTCACACGGCCTAG--ACACATGCCGTGTCTCTGGCCTGTGTAACCT
* * * * * *
50097542 CTAAATCACAAATAGTAAGCCATACGGCCTGGACACACTCCCGTGTC
1 CTAAATCACAAACAGTTAGTCACACGGCCTAGACACA-TGCCGTGTC
50097589 CTTAGCTCGT
Statistics
Matches: 136, Mismatches: 26, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
59 2 0.01
60 47 0.35
62 7 0.05
63 1 0.01
64 71 0.52
65 2 0.01
66 6 0.04
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (63 bp):
CTAAATCACAAACAGTTAGTCACACGGCCTAGACACATGCCGTGTCTCTGGCCTGTGTAACCT
Found at i:50109301 original size:43 final size:42
Alignment explanation
Indices: 50109244--50109329 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 42
50109234 AAGGCACATA
* * * *
50109244 GAAAAGAGGAATCAGCAGTTCTTTTAATGTCGTCCCTTGCAT
1 GAAAAGAGAAATCAGCAGCTCCTTTAATGTCGTCCCATGCAT
50109286 GAAAAGGAGAAATCAGCAGCTCCTTTAATGTCGTCCCATGCAT
1 GAAAA-GAGAAATCAGCAGCTCCTTTAATGTCGTCCCATGCAT
50109329 G
1 G
50109330 CTTTCTTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 5 0.13
43 34 0.87
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (42 bp):
GAAAAGAGAAATCAGCAGCTCCTTTAATGTCGTCCCATGCAT
Found at i:50114179 original size:177 final size:177
Alignment explanation
Indices: 50113883--50114240 Score: 716
Period size: 177 Copynumber: 2.0 Consensus size: 177
50113873 ACATAAGAAT
50113883 AAGAGATGAAGTTTAATTTCCGAGCCTTGGGGCAAAAATATAATTATGTAAAAGTTTATAGGCAA
1 AAGAGATGAAGTTTAATTTCCGAGCCTTGGGGCAAAAATATAATTATGTAAAAGTTTATAGGCAA
50113948 AATAATAATTTTGACAAAGTTAGAGTCGAGGGTTGTTTTGATGAATGTGAGTATTAAATAAGTTA
66 AATAATAATTTTGACAAAGTTAGAGTCGAGGGTTGTTTTGATGAATGTGAGTATTAAATAAGTTA
50114013 AATTTTCTATTTTAGATCAAGAAGAACGAAACTCGAGGCTAGAAAAA
131 AATTTTCTATTTTAGATCAAGAAGAACGAAACTCGAGGCTAGAAAAA
50114060 AAGAGATGAAGTTTAATTTCCGAGCCTTGGGGCAAAAATATAATTATGTAAAAGTTTATAGGCAA
1 AAGAGATGAAGTTTAATTTCCGAGCCTTGGGGCAAAAATATAATTATGTAAAAGTTTATAGGCAA
50114125 AATAATAATTTTGACAAAGTTAGAGTCGAGGGTTGTTTTGATGAATGTGAGTATTAAATAAGTTA
66 AATAATAATTTTGACAAAGTTAGAGTCGAGGGTTGTTTTGATGAATGTGAGTATTAAATAAGTTA
50114190 AATTTTCTATTTTAGATCAAGAAGAACGAAACTCGAGGCTAGAAAAA
131 AATTTTCTATTTTAGATCAAGAAGAACGAAACTCGAGGCTAGAAAAA
50114237 AAGA
1 AAGA
50114241 AGAATAAAGT
Statistics
Matches: 181, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
177 181 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (177 bp):
AAGAGATGAAGTTTAATTTCCGAGCCTTGGGGCAAAAATATAATTATGTAAAAGTTTATAGGCAA
AATAATAATTTTGACAAAGTTAGAGTCGAGGGTTGTTTTGATGAATGTGAGTATTAAATAAGTTA
AATTTTCTATTTTAGATCAAGAAGAACGAAACTCGAGGCTAGAAAAA
Found at i:50114377 original size:13 final size:13
Alignment explanation
Indices: 50114359--50114383 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50114349 TCCAGCAACT
50114359 ATGAATTTATTTC
1 ATGAATTTATTTC
50114372 ATGAATTTATTT
1 ATGAATTTATTT
50114384 GATGTTGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.56
Consensus pattern (13 bp):
ATGAATTTATTTC
Found at i:50114594 original size:50 final size:50
Alignment explanation
Indices: 50114482--50114780 Score: 373
Period size: 50 Copynumber: 5.8 Consensus size: 50
50114472 ATTTGGGTAA
* * * *
50114482 AGAGATCCCATATAAGACCATGTCTAGGACATGACATTGGCATCCTTGAGATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ACG
*
50114538 ATAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* *
50114588 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* * *
50114638 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* * * * *
50114688 AGAGGTCCCCTGTAAGACCATGTCTGGGACATTGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
** *
50114738 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
50114781 TGTAATGATC
Statistics
Matches: 219, Mismatches: 23, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
50 143 0.65
51 34 0.16
53 3 0.01
55 2 0.01
56 37 0.17
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
Found at i:50121667 original size:6 final size:6
Alignment explanation
Indices: 50121656--50121690 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
50121646 CCATCTGTTT
*
50121656 GATATA GATATA GATATA GATATA GATATA TATAT
1 GATATA GATATA GATATA GATATA GATATA GATAT
50121691 GTAAGTCAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (6 bp):
GATATA
Found at i:50128986 original size:16 final size:16
Alignment explanation
Indices: 50128965--50128997 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
50128955 TTCGCTGTAT
50128965 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
50128981 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
50128997 T
1 T
50128998 AGCATAAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.36, T:0.21
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:50129157 original size:55 final size:56
Alignment explanation
Indices: 50129098--50129226 Score: 124
Period size: 55 Copynumber: 2.3 Consensus size: 56
50129088 AAGATTATTA
*
50129098 ATATAAATAATAAATAATT-TAAA-ATTATTATTATTAAATATAATTTAACAAAAAT-
1 ATATAAATAATAAATAATTCTAAATATAATTATTATTAAAT-TAATTT-ACAAAAATC
* * * *
50129153 ATATAATTTAAT-AA-AATTCTAAATATAATTATTCTTATATTAATTTACTAAAATC
1 ATATAA-ATAATAAATAATTCTAAATATAATTATTATTAAATTAATTTACAAAAATC
*
50129208 ATAATATATAATAATATAA
1 AT-ATAAATAATAA-ATAA
50129227 AAATATTTAA
Statistics
Matches: 59, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
54 11 0.19
55 24 0.41
56 21 0.36
57 1 0.02
58 2 0.03
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (56 bp):
ATATAAATAATAAATAATTCTAAATATAATTATTATTAAATTAATTTACAAAAATC
Found at i:50133336 original size:24 final size:24
Alignment explanation
Indices: 50133286--50133337 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
50133276 TTTCTAGAAG
* *
50133286 ATTTAGTATTTATTAGTATATTAT
1 ATTTAGCATTTATTAGCATATTAT
50133310 ATTTAGCATTTATTAGCATACTT-T
1 ATTTAGCATTTATTAGCATA-TTAT
50133334 ATTT
1 ATTT
50133338 GGCCTACGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 23 0.92
25 2 0.08
ACGTcount: A:0.31, C:0.06, G:0.08, T:0.56
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATATTAT
Found at i:50134975 original size:24 final size:24
Alignment explanation
Indices: 50134947--50134995 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
50134937 CTAGAAGATC
*
50134947 TAGTATTTATTAGTATAATATATT
1 TAGTATTTATTAGCATAATATATT
*
50134971 TAGTATTTATTAGCATAATTTATT
1 TAGTATTTATTAGCATAATATATT
50134995 T
1 T
50134996 TACCTATGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.55
Consensus pattern (24 bp):
TAGTATTTATTAGCATAATATATT
Found at i:50135491 original size:20 final size:20
Alignment explanation
Indices: 50135466--50135505 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
50135456 TGTAAAATGA
*
50135466 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
50135486 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
50135506 AGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:50135494 original size:34 final size:35
Alignment explanation
Indices: 50135451--50135517 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
50135441 CAGTAAAATA
* *
50135451 TTTTCTGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCTGTAAAATGATTTACTAGAAAATATTTTAC
50135485 TTTTCTGTAAAATGATTTACTAGAAAATATTTT
1 TTTTCTGTAAAATGATTTACTAGAAAATATTTT
50135518 CTGCTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 18 0.60
35 12 0.40
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (35 bp):
TTTTCTGTAAAATGATTTACTAGAAAATATTTTAC
Found at i:50141561 original size:69 final size:69
Alignment explanation
Indices: 50141446--50141601 Score: 278
Period size: 69 Copynumber: 2.3 Consensus size: 69
50141436 CTGCAACCAG
* *
50141446 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTTTATGAAGAAGAAGCAAGCAATAA
1 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
50141511 TTAA
66 TTAA
50141515 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
1 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
50141580 TTAA
66 TTAA
50141584 AATTCAGAG-CAATTTCCG
1 AATTCAGAGTC-ATTTCCG
50141602 ACTGCAAAAA
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
68 1 0.01
69 83 0.99
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (69 bp):
AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
TTAA
Found at i:50145011 original size:18 final size:20
Alignment explanation
Indices: 50144978--50145015 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
50144968 GACGGGATGC
50144978 AGGGAAAGCATCAACTTTGA
1 AGGGAAAGCATCAACTTTGA
50144998 AGGG-AAGC-TCAACTTTGA
1 AGGGAAAGCATCAACTTTGA
50145016 GTAGGGAGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.56
19 4 0.22
20 4 0.22
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (20 bp):
AGGGAAAGCATCAACTTTGA
Found at i:50149172 original size:11 final size:11
Alignment explanation
Indices: 50149140--50149229 Score: 50
Period size: 11 Copynumber: 8.6 Consensus size: 11
50149130 TAAATATATT
*
50149140 TATTTTTTAAA
1 TATTTTTAAAA
50149151 -A-TTTTAAAA
1 TATTTTTAAAA
*
50149160 TATTTTTAGAA
1 TATTTTTAAAA
* *
50149171 TACTGTTAAAA
1 TATTTTTAAAA
* *
50149182 TAGTTTTT-TAT
1 TA-TTTTTAAAA
50149193 TATTTTT----
1 TATTTTTAAAA
*
50149200 TAATTTTAAAA
1 TATTTTTAAAA
50149211 TATTTTTAAAA
1 TATTTTTAAAA
50149222 TACTTTTT
1 TA-TTTTT
50149230 TAATTTTTAA
Statistics
Matches: 60, Mismatches: 11, Indels: 15
0.70 0.13 0.17
Matches are distributed among these distances:
7 6 0.10
9 7 0.12
10 7 0.12
11 32 0.53
12 8 0.13
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:50149249 original size:20 final size:20
Alignment explanation
Indices: 50149212--50149250 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
50149202 ATTTTAAAAT
*
50149212 ATTTTTAAAATACTTTTTTA
1 ATTTTTAAAATACATTTTTA
*
50149232 ATTTTTAAAATAGATTTTT
1 ATTTTTAAAATACATTTTT
50149251 GGTATTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (20 bp):
ATTTTTAAAATACATTTTTA
Found at i:50149788 original size:40 final size:39
Alignment explanation
Indices: 50149741--50149875 Score: 139
Period size: 40 Copynumber: 3.4 Consensus size: 39
50149731 CTTTTAGACA
* *
50149741 AAAAACGCCACTAAAAATCAAGCATTAGCTGCGCTTTTAT
1 AAAAACGCCGCTAAAAATCAAGCATTAGCAGCGCTTTT-T
** * *
50149781 AAAAACGCCGCTAAAGGTCGAGCATTAGCGGCGCTTTTT
1 AAAAACGCCGCTAAAAATCAAGCATTAGCAGCGCTTTTT
* * * *
50149820 GGAAAGCGCCGCTAAAAAT-AGGCATTAGCAGCGTTTTTT
1 -AAAAACGCCGCTAAAAATCAAGCATTAGCAGCGCTTTTT
50149859 AAAAAGCGCCGC-AAAAA
1 AAAAA-CGCCGCTAAAAA
50149876 GCCTAAGCCC
Statistics
Matches: 78, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
38 8 0.10
39 23 0.29
40 47 0.60
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (39 bp):
AAAAACGCCGCTAAAAATCAAGCATTAGCAGCGCTTTTT
Found at i:50149971 original size:41 final size:40
Alignment explanation
Indices: 50149914--50150030 Score: 128
Period size: 41 Copynumber: 2.9 Consensus size: 40
50149904 GTTTTTGGGG
* ** * **
50149914 CCTTTAGCGGCGTTTTTGAAAAAGCGGTGCTAATGCTCTTT
1 CCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATACTC-GA
50149955 CCTTTAGCGGCATTTTT-AAAGAAGCGCCGCTAATACTCGA
1 CCTTTAGCGGCATTTTTGAAA-AAGCGCCGCTAATACTCGA
* *
50149995 CCTTTAGAGGCGTTTTTTGAAAAAGCGCCGCTAATA
1 CCTTTAGCGGC-ATTTTTGAAAAAGCGCCGCTAATA
50150031 ATAATACAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
40 13 0.20
41 49 0.75
42 3 0.05
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (40 bp):
CCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATACTCGA
Found at i:50151060 original size:32 final size:32
Alignment explanation
Indices: 50151006--50151076 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
50150996 TTAAATAATA
*
50151006 TTTAGGGGTTAGAGATTTAGGGTCAGGTTAAAG
1 TTTA-GGGTTAGAGATTCAGGGTCAGGTTAAAG
**
50151039 TTTAGGGTTA-AGGATTCAGGGTCAGGTTAGGG
1 TTTAGGGTTAGA-GATTCAGGGTCAGGTTAAAG
50151071 TTTAGG
1 TTTAGG
50151077 ATTTAGATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 1 0.03
32 29 0.85
33 4 0.12
ACGTcount: A:0.24, C:0.04, G:0.38, T:0.34
Consensus pattern (32 bp):
TTTAGGGTTAGAGATTCAGGGTCAGGTTAAAG
Found at i:50151193 original size:110 final size:111
Alignment explanation
Indices: 50150962--50151224 Score: 300
Period size: 110 Copynumber: 2.3 Consensus size: 111
50150952 GTCAGGTTAT
* * *
50150962 GGTTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAATATTTAGGGGTTAGAGATTTAGG
1 GGTTTAGATTAATTAGTGT-TTTTAATTTATATATTAAACAAGATTTAGGGGTTAGAGAGTTA-G
* *
50151027 GTCAGGTTAAAGTTTAGGGTTAAGGATTCAGGGTCAGGTTAGGGTTTA
64 ATCAGGTTAAAGTTTAGGGTTAAGGATTCAGGGTCAGGTTAGGATTTA
* * * *
50151075 GGATTTAGATTAATTAGTGTTTTTAATTTATATATTAAACAAGGTTTATGGGTTTG-GGGTTA-A
1 GG-TTTAGATTAATTAGTGTTTTTAATTTATATATTAAACAAGATTTAGGGGTTAGAGAGTTAGA
** * *
50151138 T-A-GTTAGTGATTTAGGGTTTAGAGATTCAGGGTCGGGTTAGGATTTAA
65 TCAGGTTAAAG-TTTAGGGTTAAG-GATTCAGGGTCAGGTTAGGATTT-A
* *
50151186 GGTTTAGATTAATTAGTATTTTTTAATTTATATACTAAA
1 GGTTTAGATTAATTAGT-GTTTTTAATTTATATATTAAA
50151225 TAAGTTCTTA
Statistics
Matches: 130, Mismatches: 15, Indels: 12
0.83 0.10 0.08
Matches are distributed among these distances:
108 5 0.04
109 12 0.09
110 37 0.28
111 22 0.17
112 4 0.03
113 33 0.25
114 17 0.13
ACGTcount: A:0.30, C:0.03, G:0.25, T:0.43
Consensus pattern (111 bp):
GGTTTAGATTAATTAGTGTTTTTAATTTATATATTAAACAAGATTTAGGGGTTAGAGAGTTAGAT
CAGGTTAAAGTTTAGGGTTAAGGATTCAGGGTCAGGTTAGGATTTA
Found at i:50155085 original size:23 final size:22
Alignment explanation
Indices: 50155055--50155098 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
50155045 CCCGTATAAT
*
50155055 GAAATTTATTTATTTATTGTTAG
1 GAAATTTAATTATTTA-TGTTAG
*
50155078 GAAATTTAATTGTTTATGTTA
1 GAAATTTAATTATTTATGTTA
50155099 ATTTATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.55
Consensus pattern (22 bp):
GAAATTTAATTATTTATGTTAG
Found at i:50155129 original size:27 final size:27
Alignment explanation
Indices: 50155098--50155165 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 27
50155088 TGTTTATGTT
* *
50155098 AATTTATTTATTATAGGTGAATGTTGA
1 AATTTATTTACTATAAGTGAATGTTGA
* *
50155125 AATTTA-TTACTATAATTTAATGTTGA
1 AATTTATTTACTATAAGTGAATGTTGA
*
50155151 AACTTA-TTACTATAA
1 AATTTATTTACTATAA
50155166 TTTATTTTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 30 0.83
27 6 0.17
ACGTcount: A:0.38, C:0.04, G:0.10, T:0.47
Consensus pattern (27 bp):
AATTTATTTACTATAAGTGAATGTTGA
Found at i:50155146 original size:26 final size:26
Alignment explanation
Indices: 50155117--50155169 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
50155107 ATTATAGGTG
*
50155117 AATGTTGAAATTTATTACTATAATTT
1 AATGTTGAAACTTATTACTATAATTT
50155143 AATGTTGAAACTTATTACTATAATTT
1 AATGTTGAAACTTATTACTATAATTT
50155169 A
1 A
50155170 TTTTACTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.47
Consensus pattern (26 bp):
AATGTTGAAACTTATTACTATAATTT
Found at i:50155336 original size:43 final size:43
Alignment explanation
Indices: 50155273--50155474 Score: 282
Period size: 42 Copynumber: 4.7 Consensus size: 43
50155263 ATGGCACTTT
*
50155273 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGATCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGATCTA
* * *
50155316 TAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGTTC-CGATCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGATCTA
* *
50155358 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGATCTA
* *
50155401 TAGCGGCGTTTTTG-GGAAAGCGCCGCTAAAGGTCTTGATCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * *
50155443 TAGTGGCGTTTGTAAAAAAAGCGTCGCTAAAG
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAG
50155475 TTAGCGACGT
Statistics
Matches: 140, Mismatches: 17, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
42 75 0.54
43 65 0.46
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (43 bp):
TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGATCTA
Found at i:50155441 original size:85 final size:85
Alignment explanation
Indices: 50155273--50155474 Score: 289
Period size: 85 Copynumber: 2.4 Consensus size: 85
50155263 ATGGCACTTT
* *
50155273 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGAGAAAAGT
1 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGAGAAAAGC
*
50155338 GCCGCTAAAGTTCCGATCTA
66 GCCGCTAAAGGTCCGATCTA
** * *
50155358 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTTTG-GGAAAGC
1 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGAGAAAAGC
*
50155422 GCCGCTAAAGGTCTTGATCTA
66 GCCGCTAAAGGTC-CGATCTA
* * *
50155443 TAGTGGCGTTTGTAAAAAAAGCGTCGCTAAAG
1 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAG
50155475 TTAGCGACGT
Statistics
Matches: 103, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
84 17 0.17
85 86 0.83
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (85 bp):
TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGAGAAAAGC
GCCGCTAAAGGTCCGATCTA
Found at i:50164035 original size:39 final size:40
Alignment explanation
Indices: 50163992--50164076 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
50163982 CCACATCAAG
* * *
50163992 AAAAAAAT-CACATAAAAATGTTTAAAAATATAAAAATAT
1 AAAAAAATCCACACAAAAATATTTAAAAATAGAAAAATAT
* * * *
50164031 AAAAAAATCCACCCCAAAATATTTAAAATTAGAAAATTAT
1 AAAAAAATCCACACAAAAATATTTAAAAATAGAAAAATAT
50164071 AAAAAA
1 AAAAAA
50164077 TAAAAAATCA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 8 0.21
40 30 0.79
ACGTcount: A:0.65, C:0.09, G:0.02, T:0.24
Consensus pattern (40 bp):
AAAAAAATCCACACAAAAATATTTAAAAATAGAAAAATAT
Found at i:50166341 original size:21 final size:21
Alignment explanation
Indices: 50166317--50166449 Score: 113
Period size: 21 Copynumber: 6.3 Consensus size: 21
50166307 ATAAGGGTTG
*
50166317 AACGGAAGCTCGTAAGAGCTA
1 AACGGAAGCTCATAAGAGCTA
* * * *
50166338 AACGGAAACCCATAAGGGTTA
1 AACGGAAGCTCATAAGAGCTA
* * *
50166359 AACAGAAGCTCAAAAGAGCTG
1 AACGGAAGCTCATAAGAGCTA
* * *
50166380 AACGGAAGCTCATTAGGGTTA
1 AACGGAAGCTCATAAGAGCTA
* * * *
50166401 AATGGAAACTCATATGAGTTA
1 AACGGAAGCTCATAAGAGCTA
* *
50166422 AACAGAAGCTCGTAAGAGCTA
1 AACGGAAGCTCATAAGAGCTA
50166443 AACGGAA
1 AACGGAA
50166450 AGTAAACACA
Statistics
Matches: 82, Mismatches: 30, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 82 1.00
ACGTcount: A:0.42, C:0.17, G:0.25, T:0.17
Consensus pattern (21 bp):
AACGGAAGCTCATAAGAGCTA
Found at i:50166367 original size:42 final size:42
Alignment explanation
Indices: 50166300--50166402 Score: 134
Period size: 42 Copynumber: 2.5 Consensus size: 42
50166290 AGTGTTAACA
* * **
50166300 GAAACCCATAAGGGTTGAACGGAAGCTCGTAAGAGCTAAACG
1 GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACG
*
50166342 GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTGAACG
1 GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACG
* * *
50166384 GAAGCTCATTAGGGTTAAA
1 GAAACCCATAAGGGTTAAA
50166403 TGGAAACTCA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.41, C:0.17, G:0.26, T:0.16
Consensus pattern (42 bp):
GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACG
Found at i:50166386 original size:63 final size:63
Alignment explanation
Indices: 50166280--50166449 Score: 180
Period size: 63 Copynumber: 2.7 Consensus size: 63
50166270 AGGCTGAATT
* * * * * *
50166280 GAAACACATAAGTGTT-AACAGAAACCCATAAGGGTTGAACGGAAGCTCGTAAGAGCTAAACG
1 GAAACACATAAGAGTTAAACAGAAGCTCATAAGAGCTGAACGGAAGCTCATAAGAGCTAAACG
* * * * * * *
50166342 GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTGAACGGAAGCTCATTAGGGTTAAATG
1 GAAACACATAAGAGTTAAACAGAAGCTCATAAGAGCTGAACGGAAGCTCATAAGAGCTAAACG
* * * *
50166405 GAAACTCATATGAGTTAAACAGAAGCTCGTAAGAGCTAAACGGAA
1 GAAACACATAAGAGTTAAACAGAAGCTCATAAGAGCTGAACGGAA
50166450 AGTAAACACA
Statistics
Matches: 89, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
62 14 0.16
63 75 0.84
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.17
Consensus pattern (63 bp):
GAAACACATAAGAGTTAAACAGAAGCTCATAAGAGCTGAACGGAAGCTCATAAGAGCTAAACG
Found at i:50173242 original size:19 final size:19
Alignment explanation
Indices: 50173218--50173254 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
50173208 GTATTTTTTA
50173218 CTTAAAAA-ATTCAAAATTC
1 CTTAAAAATATT-AAAATTC
50173237 CTTAAAAATATTAAAATT
1 CTTAAAAATATTAAAATT
50173255 TTCATAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (19 bp):
CTTAAAAATATTAAAATTC
Found at i:50173949 original size:42 final size:43
Alignment explanation
Indices: 50173881--50173972 Score: 168
Period size: 42 Copynumber: 2.2 Consensus size: 43
50173871 ATAAAATGTT
50173881 AGAATTTTATGAAAAATTTTAAAAATTTATGTATTGTTTTGAG
1 AGAATTTTATGAAAAATTTTAAAAATTTATGTATTGTTTTGAG
50173924 AGAATTTTATG-AAAATTTTAAAAATTTATGTATTGTTTTGAG
1 AGAATTTTATGAAAAATTTTAAAAATTTATGTATTGTTTTGAG
*
50173966 AAAATTT
1 AGAATTT
50173973 AGGGTTTTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
42 37 0.77
43 11 0.23
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (43 bp):
AGAATTTTATGAAAAATTTTAAAAATTTATGTATTGTTTTGAG
Found at i:50174067 original size:21 final size:21
Alignment explanation
Indices: 50174041--50174086 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
50174031 TTTCTTAAGT
50174041 AAAAAATACCATAAAATTCTAA
1 AAAAAAT-CCATAAAATTCTAA
* *
50174063 AAAAAATTCATAATATTCTAA
1 AAAAAATCCATAAAATTCTAA
50174084 AAA
1 AAA
50174087 CTTTAAAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.63, C:0.11, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAAAATCCATAAAATTCTAA
Found at i:50185510 original size:27 final size:27
Alignment explanation
Indices: 50185472--50185534 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
50185462 ATTGCAAAAC
* *
50185472 AGAAAAAGAAAGAAAAGCAATCG-GAAA
1 AGAAAAAAAAAG-AAACCAATCGAGAAA
*
50185499 AGAAAAAAAAAGAACCCAATCGAGAAA
1 AGAAAAAAAAAGAAACCAATCGAGAAA
*
50185526 AGGAAAAAA
1 AGAAAAAAA
50185535 GAAAACCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.26
27 23 0.74
ACGTcount: A:0.68, C:0.10, G:0.19, T:0.03
Consensus pattern (27 bp):
AGAAAAAAAAAGAAACCAATCGAGAAA
Found at i:50185541 original size:27 final size:25
Alignment explanation
Indices: 50185480--50185541 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 25
50185470 ACAGAAAAAG
*
50185480 AAAGAAAA-GCAATCGGAAAAGAAA
1 AAAGAAAACCCAATCGGAAAAGAAA
*
50185504 AAAAAAGAACCCAATCGAGAAAAGGAAA
1 AAAGAA-AACCCAATCG-GAAAA-GAAA
50185532 AAAGAAAACC
1 AAAGAAAACC
50185542 TTTCTTGTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 6 0.19
27 9 0.29
28 9 0.29
ACGTcount: A:0.66, C:0.13, G:0.18, T:0.03
Consensus pattern (25 bp):
AAAGAAAACCCAATCGGAAAAGAAA
Found at i:50187036 original size:31 final size:31
Alignment explanation
Indices: 50187001--50187065 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
50186991 TCGAACACAT
* *
50187001 GGCTGTGTGGACGAATTGTGTAACAGGTTGA
1 GGCTGTGTGGACAAACTGTGTAACAGGTTGA
*
50187032 GGCTGTGTGGACAAACTGTGTAACTGGTTGA
1 GGCTGTGTGGACAAACTGTGTAACAGGTTGA
50187063 GGC
1 GGC
50187066 CGTGAGATGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.22, C:0.12, G:0.38, T:0.28
Consensus pattern (31 bp):
GGCTGTGTGGACAAACTGTGTAACAGGTTGA
Found at i:50190115 original size:9 final size:9
Alignment explanation
Indices: 50190098--50190134 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
50190088 TGAGTTTTCG
50190098 AATTCGAAT
1 AATTCGAAT
*
50190107 AACTCGAAT
1 AATTCGAAT
50190116 AATTCGAAT
1 AATTCGAAT
50190125 AATTCGAAT
1 AATTCGAAT
50190134 A
1 A
50190135 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:50190389 original size:30 final size:31
Alignment explanation
Indices: 50190353--50190413 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
50190343 AAACCTTTTA
*
50190353 TTTTCCCCCAAAATTTTTACTCCC-TCCCAT
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAT
* *
50190383 TTTTCCCCTAAAACTTTTATTCCCTTCCCAT
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAT
50190414 CCCACCTCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.43
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAT
Found at i:50196168 original size:15 final size:14
Alignment explanation
Indices: 50196148--50196178 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
50196138 AAGTACAATC
50196148 ATCCAAAAACTGAAA
1 ATCCAAAAACT-AAA
50196163 ATCCAAAAACTAAA
1 ATCCAAAAACTAAA
50196177 AT
1 AT
50196179 AATAGTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.61, C:0.19, G:0.03, T:0.16
Consensus pattern (14 bp):
ATCCAAAAACTAAA
Found at i:50196285 original size:33 final size:33
Alignment explanation
Indices: 50196247--50196313 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
50196237 TTACAATGTC
*
50196247 ACAAATATACTACAAATGTGACAAAAGCAACTA
1 ACAAATATACTACAAATGTGACAAAAACAACTA
50196280 ACAAATATACTACAAATGTGACAAAAACAACTA
1 ACAAATATACTACAAATGTGACAAAAACAACTA
50196313 A
1 A
50196314 GCGTCACATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.57, C:0.18, G:0.07, T:0.18
Consensus pattern (33 bp):
ACAAATATACTACAAATGTGACAAAAACAACTA
Found at i:50200734 original size:51 final size:51
Alignment explanation
Indices: 50200598--50200885 Score: 275
Period size: 51 Copynumber: 5.7 Consensus size: 51
50200588 TTTATCATTT
* * *
50200598 GATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTTTAC
1 GATACACATAGTAGCCTTCACATAGTACTACACATGTGACCAAAGCTTTT-C
* * *
50200648 GGTTA-ACGTAGTAGCCTTCACATAGTACTACACATGTGACCAAAGCTTTTT
1 -GATACACATAGTAGCCTTCACATAGTACTACACATGTGACCAAAGCTTTTC
* * * *
50200699 GGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACC--ATCATTTATC
1 GATACACATAGTAGCCTTCACATAGTACTACACATGTGACCAAAGC-TTT-TC
* * * * *
50200750 GATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTC
1 GATACACATAGTAGCCTTCACATAGTACTACACATGTGACCAAAGCTTTTC
* * * *
50200801 GATACACATTGTAGCCTTCACTTAGTGCTACACATGTGACCATTA--TTTATC
1 GATACACATAGTAGCCTTCACATAGTACTACACATGTGACCA-AAGCTTT-TC
* * *
50200852 GATACACGTGGTAGCCTTCACACAGTACTACACA
1 GATACACATAGTAGCCTTCACATAGTACTACACA
50200886 CGTGTTCATC
Statistics
Matches: 195, Mismatches: 33, Indels: 18
0.79 0.13 0.07
Matches are distributed among these distances:
49 2 0.01
50 42 0.22
51 142 0.73
52 7 0.04
53 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (51 bp):
GATACACATAGTAGCCTTCACATAGTACTACACATGTGACCAAAGCTTTTC
Found at i:50200789 original size:102 final size:102
Alignment explanation
Indices: 50200598--50200889 Score: 406
Period size: 102 Copynumber: 2.9 Consensus size: 102
50200588 TTTATCATTT
* * * * * *** * *
50200598 GATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA-CGGTTAACGTAGTAG
1 GATACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAG
* * * *
50200662 CCTTCACATAGTACTACACATGTGACCAAAGCTTTTT
66 CCTTCACACAGTACTACACACGTGACCAAAGCTTCTC
*
50200699 GGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAG
1 GATACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAG
50200764 CCTTCACACAGTACTACACACGTGACCAAAGCTTCTC
66 CCTTCACACAGTACTACACACGTGACCAAAGCTTCTC
* * * *
50200801 GATACACATTGTAGCCTTCACTTAGTGCTACACATGTGACCATTATTTATCGATACACGTGGTAG
1 GATACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAG
50200866 CCTTCACACAGTACTACACACGTG
66 CCTTCACACAGTACTACACACGTG
50200890 TTCATCGATA
Statistics
Matches: 170, Mismatches: 20, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
101 40 0.24
102 130 0.76
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (102 bp):
GATACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAG
CCTTCACACAGTACTACACACGTGACCAAAGCTTCTC
Found at i:50200879 original size:153 final size:151
Alignment explanation
Indices: 50200602--50200885 Score: 358
Period size: 153 Copynumber: 1.9 Consensus size: 151
50200592 TCATTTGATA
* * * * *
50200602 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTTAACGTAGTAGCCTTC
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAGTTCTACGGATAACATAGTAGCCTTC
* * * **
50200667 ACATAGTACTACACATGTGACCAAAGCTTTTTGGTACACATTGTAGCCTTCACTTAGTACTACAC
66 ACATAGTACTACACATGTGACCAAA-CTTTTCGATACACATGGTAGCCTTCACACAGTACTACAC
50200732 ATGTGACCATCATTTATCGATT
130 ATGTGACCATCATTTATCGATT
*
50200754 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCT-C-GATACACATTGTAGCC
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACC-AAG-TTCTACGGATA-ACATAGTAGCC
* * * *
50200817 TTCACTTAGTGCTACACATGTGACCATTA-TTTATCGATACACGTGGTAGCCTTCACACAGTACT
63 TTCACATAGTACTACACATGTGACCA-AACTTT-TCGATACACATGGTAGCCTTCACACAGTACT
50200881 ACACA
126 ACACA
50200886 CGTGTTCATC
Statistics
Matches: 112, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
152 41 0.37
153 67 0.60
154 4 0.04
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (151 bp):
CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAGTTCTACGGATAACATAGTAGCCTTC
ACATAGTACTACACATGTGACCAAACTTTTCGATACACATGGTAGCCTTCACACAGTACTACACA
TGTGACCATCATTTATCGATT
Found at i:50225602 original size:19 final size:20
Alignment explanation
Indices: 50225580--50225617 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
50225570 TCTTGTATTG
*
50225580 ATACTTTT-TTAAGGTATCA
1 ATACTTTTCTTAAGATATCA
50225599 ATACTTTTCTTAAGATATC
1 ATACTTTTCTTAAGATATC
50225618 GATATATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.32, C:0.13, G:0.08, T:0.47
Consensus pattern (20 bp):
ATACTTTTCTTAAGATATCA
Found at i:50227647 original size:28 final size:29
Alignment explanation
Indices: 50227602--50227662 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 29
50227592 ATTTATTTGT
*
50227602 TTAAGGTTTAGGGATTTTAAAA-AATAAA
1 TTAAGGTTTAGGAATTTTAAAATAATAAA
*
50227630 TTAAGGTTTA-GAATTTTTAAAATAATTAA
1 TTAAGGTTTAGGAA-TTTTAAAATAATAAA
50227659 TTAA
1 TTAA
50227663 ATTAGGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 2 0.07
28 18 0.62
29 9 0.31
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (29 bp):
TTAAGGTTTAGGAATTTTAAAATAATAAA
Found at i:50227681 original size:33 final size:32
Alignment explanation
Indices: 50227626--50227744 Score: 123
Period size: 33 Copynumber: 3.6 Consensus size: 32
50227616 TTTTAAAAAA
**
50227626 TAAATTAAGGTTTAGAATTTTTAAAATAATTAAT
1 TAAATT-AGGTTTAG-GGTTTTAAAATAATTAAT
*
50227660 TAAATTAGGTTTTAGGGTTTT-AAGTAAATTAAT
1 TAAATTAGG-TTTAGGGTTTTAAAAT-AATTAAT
* * *
50227693 TAAATTAAAGTTTAGAGTTTTAAAAAAATTAAT
1 TAAATT-AGGTTTAGGGTTTTAAAATAATTAAT
50227726 TAAATTAGGGTTTAGGGTT
1 TAAATTA-GGTTTAGGGTT
50227745 GAGTGTTGAA
Statistics
Matches: 71, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
32 4 0.06
33 52 0.73
34 15 0.21
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.43
Consensus pattern (32 bp):
TAAATTAGGTTTAGGGTTTTAAAATAATTAAT
Found at i:50227761 original size:67 final size:66
Alignment explanation
Indices: 50227619--50227744 Score: 175
Period size: 66 Copynumber: 1.9 Consensus size: 66
50227609 TTAGGGATTT
* * * * *
50227619 TAAAAAA-TAAATTAAGGTTTAGAATTTTTAAAATAATTAATTAAATTAGGTTTTAGGGTTTTAA
1 TAAAAAATTAAATTAAAGTTTAGAAGTTTTAAAAAAATTAATTAAATTAGGGTTTAGGGTTTGAA
50227683 G
66 G
*
50227684 TAAATTAATTAAATTAAAGTTTAG-AGTTTTAAAAAAATTAATTAAATTAGGGTTTAGGGTT
1 TAAA-AAATTAAATTAAAGTTTAGAAGTTTTAAAAAAATTAATTAAATTAGGGTTTAGGGTT
50227745 GAGTGTTGAA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
65 4 0.07
66 36 0.67
67 14 0.26
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.41
Consensus pattern (66 bp):
TAAAAAATTAAATTAAAGTTTAGAAGTTTTAAAAAAATTAATTAAATTAGGGTTTAGGGTTTGAA
G
Found at i:50228050 original size:125 final size:126
Alignment explanation
Indices: 50227786--50228297 Score: 570
Period size: 117 Copynumber: 4.2 Consensus size: 126
50227776 ATTTTGTTTC
*** *
50227786 CTTTTTCTACAGTAGTTTCTGAAATTTTAATTTTGAGAAGACGGTTCTG-AAAAATAGTGACAAA
1 CTTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGATAAA
* * * * *
50227850 AACGCTTCAAGCAAG-ATGCACTGTCAACAAAAGTACTGAAAAAAGCTCCTACGTAGACACT
66 AACGCTTCAAGC-AGTATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACATGGACGCT
* * * *
50227911 CTTTTTCTACAGTAGTTTCT-AAAAAATAATTTTGAGAAGGCAGTTTTGAAAAAATAATG-TAAA
1 CTTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGATAAA
* * * * * * ** *
50227974 AATGCTTCAATCAGTATGCACTCTCAGCAGAATTACTGACAAAAAACTCCCATGTGGATGCT
66 AACGCTTCAAGCAGTATGCACTGTCAACAAAATTACTGA-AAAAAGCTCCCACATGGACGCT
* * *
50228036 CTTTTTCTATAGTAGTTCCTGAAAAAATAATTTTGAAAAGACGGTTCTGAAAAAATAGTG-TCAA
1 CTTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGAT-AA
* *
50228100 AAACGCTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAATCTCCCACATGGACGCT
65 AAACGCTTCAAGCAGTATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACATGGACGCT
* * * *
50228162 C--TTT-T----T--TTCCTGGAAAAATAATTTTGAGAATACGGTTTTGAAAAAATAGTGCA-AA
1 CTTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTG-ATAA
* * *
50228217 AAATGCTTCAAGCAGTATGCACTGTCACCAAAATTACTGAAAAAAGCTCCCACATGGACTCT
65 AAACGCTTCAAGCAGTATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACATGGACGCT
50228279 CTTTTTCTACAGTA-TTTCT
1 CTTTTTCTACAGTAGTTTCT
50228298 TGCTTGGCCT
Statistics
Matches: 325, Mismatches: 47, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
117 101 0.31
119 4 0.01
120 1 0.00
123 3 0.01
124 59 0.18
125 67 0.21
126 54 0.17
127 36 0.11
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (126 bp):
CTTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGATAAA
AACGCTTCAAGCAGTATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACATGGACGCT
Found at i:50236022 original size:530 final size:530
Alignment explanation
Indices: 50235021--50236082 Score: 2115
Period size: 530 Copynumber: 2.0 Consensus size: 530
50235011 CTCTGTTTTC
50235021 TCTTGGCGCCTCCAGTTAGTTCTTCCGACGAGTTCCGCTCTGGTTACGTCCATTCCAGGTCGGTA
1 TCTTGGCGCCTCCAGTTAGTTCTTCCGACGAGTTCCGCTCTGGTTACGTCCATTCCAGGTCGGTA
50235086 CACACTCGTTTGGGAACAAAAACCCGCAATGTCGGATTCGCTCATCAGAGCTCCGGCATTTTCGA
66 CACACTCGTTTGGGAACAAAAACCCGCAATGTCGGATTCGCTCATCAGAGCTCCGGCATTTTCGA
50235151 ATGCGTCGAAGATTTTGCGATCTTCGCGGTTGAGGACTAGCAATGAGCCGCAAGGGATGTTGTGG
131 ATGCGTCGAAGATTTTGCGATCTTCGCGGTTGAGGACTAGCAATGAGCCGCAAGGGATGTTGTGG
*
50235216 AGGTGGTCGCCATCGCCGAGGAAGAGGAAGCTTTGATCGGCGCGTTGGATTTTCAAGCCGTCGAA
196 AGGTGATCGCCATCGCCGAGGAAGAGGAAGCTTTGATCGGCGCGTTGGATTTTCAAGCCGTCGAA
50235281 GCCTGCTAATGAAGTATCAGCTCGGAGATTACCGTCGCGTTTCCAGATCTTGTAGGTATCGGAAG
261 GCCTGCTAATGAAGTATCAGCTCGGAGATTACCGTCGCGTTTCCAGATCTTGTAGGTATCGGAAG
50235346 GAGCGATTTTTCCGACGAACGGAATTACGGAGCTTTCGAAGTGAAAGGAGATTTCCATGTAGAAG
326 GAGCGATTTTTCCGACGAACGGAATTACGGAGCTTTCGAAGTGAAAGGAGATTTCCATGTAGAAG
50235411 TCACGCATTCGGCGGAGGACGGCAATTACGCGAGGTAAACGGCGGCGCCACTTGCACCAGGCGGA
391 TCACGCATTCGGCGGAGGACGGCAATTACGCGAGGTAAACGGCGGCGCCACTTGCACCAGGCGGA
50235476 GCGGTGGTGGAGTTTCAAAAGAACCAACGCAATGTCGGAGCTTCGGCGACAGAGTGCTTCTTGGA
456 GCGGTGGTGGAGTTTCAAAAGAACCAACGCAATGTCGGAGCTTCGGCGACAGAGTGCTTCTTGGA
50235541 GAGGATTCCA
521 GAGGATTCCA
50235551 TCTTGGCGCCTCCAGTTAGTTCTTCCGACGAGTTCCGCTCTGGTTACGTCCATTCCAGGTCGGTA
1 TCTTGGCGCCTCCAGTTAGTTCTTCCGACGAGTTCCGCTCTGGTTACGTCCATTCCAGGTCGGTA
50235616 CACACTCGTTTGGGAACAAAAACCCGCAATGTCGGATTCGCTCATCAGAGCTCCGGCATTTTCGA
66 CACACTCGTTTGGGAACAAAAACCCGCAATGTCGGATTCGCTCATCAGAGCTCCGGCATTTTCGA
50235681 ATGCGTCGAAGATTTTGCGATCTTCGCGGTTGAGGACTAGCAATGAGCCGCAAGGGATGTTGTGG
131 ATGCGTCGAAGATTTTGCGATCTTCGCGGTTGAGGACTAGCAATGAGCCGCAAGGGATGTTGTGG
50235746 AGGTGATCGCCATCGCCGAGGAAGAGGAAGCTTTGATCGGCGCGTTGGATTTTCAAGCCGTCGAA
196 AGGTGATCGCCATCGCCGAGGAAGAGGAAGCTTTGATCGGCGCGTTGGATTTTCAAGCCGTCGAA
50235811 GCCTGCTAATGAAGTATCAGCTCGGAGATTACCGTCGCGTTTCCAGATCTTGTAGGTATCGGAAG
261 GCCTGCTAATGAAGTATCAGCTCGGAGATTACCGTCGCGTTTCCAGATCTTGTAGGTATCGGAAG
50235876 GAGCGATTTTTCCGACGAACGGAATTACGGAGCTTTCGAAGTGAAAGGAGATTTCCATGTAGAAG
326 GAGCGATTTTTCCGACGAACGGAATTACGGAGCTTTCGAAGTGAAAGGAGATTTCCATGTAGAAG
50235941 TCACGCATTCGGCGGAGGACGGCAATTACGCGAGGTAAACGGCGGCGCCACTTGCACCAGGCGGA
391 TCACGCATTCGGCGGAGGACGGCAATTACGCGAGGTAAACGGCGGCGCCACTTGCACCAGGCGGA
50236006 GCGGTGGTGGAGTTTCAAAAGAACCAACGCAATGTCGGAGCTTCGGCGACAGAGTGCTTCTTGGA
456 GCGGTGGTGGAGTTTCAAAAGAACCAACGCAATGTCGGAGCTTCGGCGACAGAGTGCTTCTTGGA
50236071 GAGGATTCCA
521 GAGGATTCCA
50236081 TC
1 TC
50236083 CCGCAGCGTT
Statistics
Matches: 531, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
530 531 1.00
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (530 bp):
TCTTGGCGCCTCCAGTTAGTTCTTCCGACGAGTTCCGCTCTGGTTACGTCCATTCCAGGTCGGTA
CACACTCGTTTGGGAACAAAAACCCGCAATGTCGGATTCGCTCATCAGAGCTCCGGCATTTTCGA
ATGCGTCGAAGATTTTGCGATCTTCGCGGTTGAGGACTAGCAATGAGCCGCAAGGGATGTTGTGG
AGGTGATCGCCATCGCCGAGGAAGAGGAAGCTTTGATCGGCGCGTTGGATTTTCAAGCCGTCGAA
GCCTGCTAATGAAGTATCAGCTCGGAGATTACCGTCGCGTTTCCAGATCTTGTAGGTATCGGAAG
GAGCGATTTTTCCGACGAACGGAATTACGGAGCTTTCGAAGTGAAAGGAGATTTCCATGTAGAAG
TCACGCATTCGGCGGAGGACGGCAATTACGCGAGGTAAACGGCGGCGCCACTTGCACCAGGCGGA
GCGGTGGTGGAGTTTCAAAAGAACCAACGCAATGTCGGAGCTTCGGCGACAGAGTGCTTCTTGGA
GAGGATTCCA
Found at i:50240835 original size:41 final size:41
Alignment explanation
Indices: 50240772--50240886 Score: 153
Period size: 41 Copynumber: 2.8 Consensus size: 41
50240762 AGGCTTTAAT
*
50240772 GGCGTTTTTAAAAAGCGCCGCTAATGCTCAGGGT-TTTAGC
1 GGCGTTTTTAAAAAGCGTCGCTAATGCTCAGGGTCTTTAGC
* *
50240812 GGCGTTTTTAGAAAAGCATCGCTAATGATC-GGGTCTTTAGC
1 GGCGTTTTTA-AAAAGCGTCGCTAATGCTCAGGGTCTTTAGC
* *
50240853 GGCGTTTTTAATGAAGCGTCGCTAATGCTTAGGG
1 GGCGTTTTTAA-AAAGCGTCGCTAATGCTCAGGG
50240887 CAATAGTGGC
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
40 15 0.23
41 46 0.72
42 3 0.05
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (41 bp):
GGCGTTTTTAAAAAGCGTCGCTAATGCTCAGGGTCTTTAGC
Found at i:50245909 original size:43 final size:43
Alignment explanation
Indices: 50245771--50246082 Score: 423
Period size: 43 Copynumber: 7.3 Consensus size: 43
50245761 AGATTATGTT
* ** * *
50245771 TTTAGCGGCGTTTTTGCTAGAAGCGCCGCTAAAGGT-TTGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * * ** * *
50245813 TTTAGTGGCATTTTTGATAAAAGTGCCGCTAAAGGTCATGGT-
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
*
50245855 TTATAGCGGCGTTTGTGGGAAAACCGCCGCTAAAGGTCTTGGTC
1 TT-TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* *
50245899 TTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* *
50245942 TTTAGTGGCGTTTGTGTGAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
*
50245985 TTTAGCGGCGTTTGTGGG-AAAGCGCTGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
*
50246027 TTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
50246070 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
50246083 TTTCTAAAAA
Statistics
Matches: 243, Mismatches: 23, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
42 74 0.30
43 167 0.69
44 2 0.01
ACGTcount: A:0.19, C:0.17, G:0.32, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:50245930 original size:86 final size:86
Alignment explanation
Indices: 50245771--50246082 Score: 423
Period size: 85 Copynumber: 3.7 Consensus size: 86
50245761 AGATTATGTT
* ** * * * * * **
50245771 TTTAGCGGCGTTTTTGCTAGAAGCGCCGCTAAAGGT-TTGTTCTTTAGTGGCATTTTTGATAAAA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAA
*
50245835 GTGCCGCTAAAGGTCATGGT-
66 GCGCCGCTAAAGGTCATGGTC
* *
50245855 TTATAGCGGCGTTTGTGGGAAAACCGCCGCTAAAGGTCTTGGTCTTTAGTGGCGTTTGTGGGAAA
1 TT-TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAA
*
50245920 AGCGCCGCTAAAGGTCCTGGTC
65 AGCGCCGCTAAAGGTCATGGTC
* *
50245942 TTTAGTGGCGTTTGTGTGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGG-AAA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAA
* *
50246006 GCGCTGCTAAAGGTCTTGGTC
66 GCGCCGCTAAAGGTCATGGTC
*
50246027 TTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCTTGGTCTTTAGCGGCGTTT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTT
50246083 TTTCTAAAAA
Statistics
Matches: 204, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
84 2 0.01
85 104 0.51
86 96 0.47
87 2 0.01
ACGTcount: A:0.19, C:0.17, G:0.32, T:0.32
Consensus pattern (86 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAA
GCGCCGCTAAAGGTCATGGTC
Found at i:50246102 original size:128 final size:128
Alignment explanation
Indices: 50245771--50246103 Score: 438
Period size: 128 Copynumber: 2.6 Consensus size: 128
50245761 AGATTATGTT
* ** * * * *
50245771 TTTAGCGGCGTTTTTGCTAGAAGCGCCGCTAAAGGT-TTGTTCTTTAGTGGCATTTTTGATAAAA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGTGGCGTTTTT-TTAAAA
50245835 GTGCCGCTAAAGGTCATGGTTTATAGCGGCGTTTGTGGGAAAACCGCCGCTAAAGGTCTTGGTC
65 GTGCCGCTAAAGGTCATGGTTTATAGCGGCGTTTGTGGGAAAACCGCCGCTAAAGGTCTTGGTC
* * * *
50245899 TTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGTCTTTAGTGGCGTTTGTGTGAAAA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGTGGCGTTT-TTTTAAAA
* * * *
50245964 GCGCCGCTAAAGGTCTTGGTCTT-TAGCGGCGTTTGTGGG-AAAGCGCTGCTAAAGGTCTTGGTC
65 GTGCCGCTAAAGGTCATGGT-TTATAGCGGCGTTTGTGGGAAAACCGCCGCTAAAGGTCTTGGTC
* *
50246027 TTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCTTGGTCTTTAGCGGCGTTTTTTCTAAAA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGTGGCGTTTTTT-TAAAA
* *
50246092 ATGCCACTAAAG
65 GTGCCGCTAAAG
50246104 TTAGCGACGC
Statistics
Matches: 177, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
127 2 0.01
128 118 0.67
129 54 0.31
130 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.31, T:0.32
Consensus pattern (128 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGTGGCGTTTTTTTAAAAG
TGCCGCTAAAGGTCATGGTTTATAGCGGCGTTTGTGGGAAAACCGCCGCTAAAGGTCTTGGTC
Found at i:50256496 original size:32 final size:31
Alignment explanation
Indices: 50256459--50256518 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
50256449 ACATAAATTT
50256459 AAATA-TTATAACTACTAAATAATTTATTATAA
1 AAATATTTATAA-TACTAAATAA-TTATTATAA
**
50256491 AAATATTTATAATTTTAAATAATTATTA
1 AAATATTTATAATACTAAATAATTATTA
50256519 ATTTGTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 6 0.24
32 13 0.52
33 6 0.24
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (31 bp):
AAATATTTATAATACTAAATAATTATTATAA
Found at i:50256510 original size:16 final size:18
Alignment explanation
Indices: 50256491--50256527 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
50256481 TTTATTATAA
*
50256491 AAATATTTA-TAATTT-T
1 AAATAATTATTAATTTGT
50256507 AAATAATTATTAATTTGT
1 AAATAATTATTAATTTGT
50256525 AAA
1 AAA
50256528 AATAGTGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 6 0.33
18 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
AAATAATTATTAATTTGT
Found at i:50256897 original size:19 final size:19
Alignment explanation
Indices: 50256875--50256912 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
50256865 TTTTAAATTT
*
50256875 AAATTA-GTTTTTGGAAAAA
1 AAATTATGTTATT-GAAAAA
50256894 AAATTATGTTATTGAAAAA
1 AAATTATGTTATTGAAAAA
50256913 TATTTATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (19 bp):
AAATTATGTTATTGAAAAA
Found at i:50257528 original size:22 final size:22
Alignment explanation
Indices: 50257503--50257594 Score: 112
Period size: 22 Copynumber: 4.2 Consensus size: 22
50257493 AAATTCAATA
* *
50257503 TCAATTTCTTTCAAAAATTCTC
1 TCAATTCCCTTCAAAAATTCTC
* *
50257525 TCAATTCCTTTCAAAATTTCTC
1 TCAATTCCCTTCAAAAATTCTC
* *
50257547 TCAATTCCCTTCAAAATTTCTA
1 TCAATTCCCTTCAAAAATTCTC
* *
50257569 TCAATTTCCTTCCAAAATTCTC
1 TCAATTCCCTTCAAAAATTCTC
50257591 TCAA
1 TCAA
50257595 ACTCTCAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 62 1.00
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.42
Consensus pattern (22 bp):
TCAATTCCCTTCAAAAATTCTC
Found at i:50257610 original size:52 final size:51
Alignment explanation
Indices: 50257544--50257646 Score: 129
Period size: 52 Copynumber: 2.0 Consensus size: 51
50257534 TTCAAAATTT
* * *
50257544 CTCTCAATTCCCTT-CAAAATTTCTATCAATTTCCTTCCAAAATTCTCTCAAA
1 CTCTCAATTCCCTTCCAAAA-TCCTATCAATTTCCTTCAAAAAATCTC-CAAA
*
50257596 CTCTCAAATT-CCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCCAAA
1 CTCTC-AATTCCCTTCCAAAATCCTATCAATTTCCTTCAAAAAATCTCCAAA
50257647 TCCATATTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
51 4 0.09
52 32 0.71
53 9 0.20
ACGTcount: A:0.33, C:0.32, G:0.00, T:0.35
Consensus pattern (51 bp):
CTCTCAATTCCCTTCCAAAATCCTATCAATTTCCTTCAAAAAATCTCCAAA
Found at i:50257635 original size:21 final size:22
Alignment explanation
Indices: 50257596--50257637 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
50257586 TTCTCTCAAA
50257596 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
* *
50257618 CTCTCAATTTCCTTCAAAAA
1 CTCTCAAATTCCTTCCAAAA
50257638 ATCTCCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Found at i:50257741 original size:29 final size:30
Alignment explanation
Indices: 50257679--50257741 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 30
50257669 ATTAAATTTC
*
50257679 ATTTTTTAAGAAAATTTTAAAATTTTTTAT
1 ATTTTTTAAGAAAATTTTAAAATTTTTAAT
*
50257709 -TTTTTTAA-ATAATTTTAAAATTTTTAAT
1 ATTTTTTAAGAAAATTTTAAAATTTTTAAT
50257737 ATTTT
1 ATTTT
50257742 CAACAATGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 18 0.60
29 12 0.40
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (30 bp):
ATTTTTTAAGAAAATTTTAAAATTTTTAAT
Found at i:50257840 original size:23 final size:23
Alignment explanation
Indices: 50257814--50257889 Score: 84
Period size: 23 Copynumber: 3.2 Consensus size: 23
50257804 ATGGTAAGTA
50257814 TTAAA-TTTAAATTTTAAATTTTT
1 TTAAATTTTAAA-TTTAAATTTTT
*
50257837 TTAAATTTTAAATAT-AATTTTT
1 TTAAATTTTAAATTTAAATTTTT
*
50257859 ATAAATTATTAAATTTAAATTTAATT
1 TTAAATT-TTAAATTTAAATTT--TT
50257885 TTAAA
1 TTAAA
50257890 GATATTCAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
22 13 0.30
23 14 0.32
24 11 0.25
26 6 0.14
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TTAAATTTTAAATTTAAATTTTT
Found at i:50257858 original size:22 final size:23
Alignment explanation
Indices: 50257830--50257872 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
50257820 TTAAATTTTA
*
50257830 AATTTTTTTAAATT-TTAAATAT
1 AATTTTTATAAATTATTAAATAT
50257852 AATTTTTATAAATTATTAAAT
1 AATTTTTATAAATTATTAAAT
50257873 TTAAATTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
AATTTTTATAAATTATTAAATAT
Found at i:50257859 original size:30 final size:29
Alignment explanation
Indices: 50257814--50257886 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 29
50257804 ATGGTAAGTA
* * *
50257814 TTAAATTTAAATTTTA-AATTTTTTTAAATT
1 TTAAATTTAATTTTTATAA-ATTATTAAA-T
*
50257844 TTAAATATAATTTTTATAAATTATTAAAT
1 TTAAATTTAATTTTTATAAATTATTAAAT
50257873 TTAAATTTAATTTT
1 TTAAATTTAATTTT
50257887 AAAGATATTC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 14 0.38
30 21 0.57
31 2 0.05
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (29 bp):
TTAAATTTAATTTTTATAAATTATTAAAT
Found at i:50264700 original size:125 final size:125
Alignment explanation
Indices: 50264478--50264720 Score: 373
Period size: 125 Copynumber: 1.9 Consensus size: 125
50264468 CCACGAGGGT
* *
50264478 GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAATTTATTTCCTACATGACCAACTGTAGC
1 GCGATTTGACACTATTTCCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
* * *
50264543 GAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCA
66 GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTATCA
* *
50264603 GCGATTTTATACTATTTCCTCAGAAAACGTCAAAAAAAAATTATTT-CTCACATGACC-ACTGTA
1 GCGATTTGACACTATTTCCTCAG-AAACGTCAAAAAAAAATTATTTCCT-ACATGACCAACTGTA
* *
50264666 GCGAAATCGCGTCCACGAGGCCACTATTTCACAATTTCTTCTTAAATAGCATCCT
64 GCGAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCT
50264721 AGTAGAAGCA
Statistics
Matches: 107, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
125 78 0.73
126 29 0.27
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (125 bp):
GCGATTTGACACTATTTCCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTATCA
Found at i:50264742 original size:125 final size:125
Alignment explanation
Indices: 50264481--50264757 Score: 364
Period size: 125 Copynumber: 2.2 Consensus size: 125
50264471 CGAGGGTGCG
* * *
50264481 ATTTGACACTATTTGCTCAGAAACGTCAAAAAAAATTTATTTCCTACATGACCAACTGTAGCGAA
1 ATTTCACACTATTTCCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGCGAA
* * * * ** *
50264546 ATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCAGCG
66 ATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAAGCA
* *
50264606 ATTTTATACTATTTCCTCAGAAAACGTCAAAAAAAAATTATTT-CTCACATGACC-ACTGTAGCG
1 ATTTCACACTATTTCCTCAG-AAACGTCAAAAAAAAATTATTTCCT-ACATGACCAACTGTAGCG
* *
50264669 AAATCGCGTCCACGAGGCCACTATTTCACAATTTCTTCTTAAATAGCATCCTAGTAGAAGCA
64 AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAAGCA
* *
50264731 ATTTCCCACTA-TTAC-CAGAAACGTCAA
1 ATTTCACACTATTTCCTCAGAAACGTCAA
50264758 CTCGAAAAAA
Statistics
Matches: 133, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
122 9 0.07
123 3 0.02
124 3 0.02
125 89 0.67
126 29 0.22
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (125 bp):
ATTTCACACTATTTCCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGCGAA
ATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAAGCA
Found at i:50269635 original size:29 final size:28
Alignment explanation
Indices: 50269603--50269663 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 28
50269593 AAAGGCCGGC
50269603 TTTTTTCAA-AATTTACCGAAATGGGCCA
1 TTTTTT-AATAATTTACCGAAATGGGCCA
* *
50269631 GTTTTTTAATTATTTACCGGAATGGGCCA
1 -TTTTTTAATAATTTACCGAAATGGGCCA
50269660 TTTT
1 TTTT
50269664 CCTCGAAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 6 0.21
29 23 0.79
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.43
Consensus pattern (28 bp):
TTTTTTAATAATTTACCGAAATGGGCCA
Found at i:50276523 original size:18 final size:17
Alignment explanation
Indices: 50276490--50276528 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
50276480 TTGTATAAAT
50276490 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
50276508 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
50276525 TGTG
1 TGTG
50276529 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:50276781 original size:23 final size:23
Alignment explanation
Indices: 50276754--50276851 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
50276744 AGTGTTATTG
50276754 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
50276777 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
50276800 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
50276822 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
50276845 ATCAGTG
1 ATCAGTG
50276852 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:50276820 original size:45 final size:45
Alignment explanation
Indices: 50276756--50276844 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
50276746 TGTTATTGAT
* *
50276756 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
50276801 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
50276845 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:50283896 original size:18 final size:17
Alignment explanation
Indices: 50283863--50283901 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
50283853 TTGTATAAAT
50283863 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
50283881 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
50283898 TGTG
1 TGTG
50283902 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:50284154 original size:23 final size:23
Alignment explanation
Indices: 50284127--50284224 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
50284117 AGTGTTATTG
*
50284127 ATCAGTGGTAACTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
50284150 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
50284173 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
50284195 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
50284218 ATCAGTG
1 ATCAGTG
50284225 TGGCACTTAT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
22 20 0.29
23 48 0.71
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:50284193 original size:45 final size:45
Alignment explanation
Indices: 50284129--50284217 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
50284119 TGTTATTGAT
* *
50284129 CAGTGGTAACTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAACTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
*
50284174 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAACTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
50284218 ATCAGTGTGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.31
Consensus pattern (45 bp):
CAGTGGTAACTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:50290293 original size:47 final size:47
Alignment explanation
Indices: 50290184--50290279 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
50290174 TTTTATGTAT
*
50290184 TTAAAATTTATATTAATTACTGAAAATAGTACTTAAAATTTATTTTA
1 TTAAAATTTATATTAATTACTGAAAATAGTACTTAAAATTTACTTTA
50290231 TTAAAATTTATATTAATTACTGAAAATAGTACTTAAAATTTACTTTA
1 TTAAAATTTATATTAATTACTGAAAATAGTACTTAAAATTTACTTTA
50290278 TT
1 TT
50290280 TATTATTCTA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (47 bp):
TTAAAATTTATATTAATTACTGAAAATAGTACTTAAAATTTACTTTA
Found at i:50290517 original size:1 final size:1
Alignment explanation
Indices: 50290511--50290535 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
50290501 ATCATTCCGT
50290511 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
50290536 CTTAACCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:50291695 original size:11 final size:11
Alignment explanation
Indices: 50291679--50291757 Score: 62
Period size: 11 Copynumber: 7.6 Consensus size: 11
50291669 AATTAATCAC
50291679 ATTAATATTAA
1 ATTAATATTAA
50291690 ATTAATA--AA
1 ATTAATATTAA
* *
50291699 A-TATTATCTAG
1 ATTAATAT-TAA
*
50291710 ATAAATATTAA
1 ATTAATATTAA
50291721 ATTAA-ATTAA
1 ATTAATATTAA
* *
50291731 A-T-ATCTTAT
1 ATTAATATTAA
50291740 ATTAATATTAA
1 ATTAATATTAA
50291751 ATTAATA
1 ATTAATA
50291758 AAATAATATC
Statistics
Matches: 51, Mismatches: 10, Indels: 14
0.68 0.13 0.19
Matches are distributed among these distances:
8 5 0.10
9 8 0.16
10 7 0.14
11 27 0.53
12 4 0.08
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (11 bp):
ATTAATATTAA
Found at i:50291717 original size:31 final size:30
Alignment explanation
Indices: 50291677--50291780 Score: 120
Period size: 31 Copynumber: 3.4 Consensus size: 30
50291667 ATAATTAATC
*
50291677 ACATTAATATTAAATTAATAAAATATTATCT
1 ACATAAATATTAAATTAATAAAATA-TATCT
* * *
50291708 AGATAAATATTAAATTAAATTAAATATCT-T
1 ACATAAATATTAAATT-AATAAAATATATCT
* *
50291738 ATATTAATATTAAATTAATAAAATAATATCT
1 ACATAAATATTAAATTAATAAAAT-ATATCT
50291769 ACATAAATATTA
1 ACATAAATATTA
50291781 CATTTAAGTT
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
29 7 0.12
30 18 0.30
31 27 0.45
32 8 0.13
ACGTcount: A:0.54, C:0.05, G:0.01, T:0.40
Consensus pattern (30 bp):
ACATAAATATTAAATTAATAAAATATATCT
Found at i:50298425 original size:31 final size:31
Alignment explanation
Indices: 50298387--50298453 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
50298377 ATCTTAGGAC
50298387 AGTCATCTAAAGAAAAATGAAAACCTAATGT
1 AGTCATCTAAAGAAAAATGAAAACCTAATGT
*
50298418 AGTCATCTAAAGAAAAATGAACACCTAATGT
1 AGTCATCTAAAGAAAAATGAAAACCTAATGT
50298449 AGTCA
1 AGTCA
50298454 ATTGAGTGCC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.49, C:0.15, G:0.13, T:0.22
Consensus pattern (31 bp):
AGTCATCTAAAGAAAAATGAAAACCTAATGT
Found at i:50314378 original size:102 final size:102
Alignment explanation
Indices: 50314202--50314589 Score: 395
Period size: 102 Copynumber: 3.9 Consensus size: 102
50314192 TATCAATGAA
* * *
50314202 CACGTATGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAGTAATGGTCACATGTGTGGTAC
1 CACGTATGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAACTAACGGTCACATGTGTAGTAC
50314267 TAAGTGAAGGCTACTATGTGTACCAAGAAGCTTTGAG
66 TAAGTGAAGGCTACTATGTGTACCAAGAAGCTTTGAG
* * * * * *
50314304 CACGTGTGCAGTACTGTGTGAATGCTACCACGTGTCTCGGTAAACT-ACGGTCACATGTGTAGTA
1 CACGTATGTAGTACTGTGTGAAGGCTACTACGTGTATCGAT-AACTAACGGTCACATGTGTAGTA
50314368 CTAAGTGAAGGCTACTATGTGTACCAAGAAGCTTTGAG
65 CTAAGTGAAGGCTACTATGTGTACCAAGAAGCTTTGAG
* * * * * *
50314406 CACGTCTGTAGTACTGAGTGAAGGCTACTACGTG-AGCCATAA--AACTTGATCACGTGTGTAGT
1 CACGTATGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAACTAAC--GGTCACATGTGTAGT
* * *
50314468 ACTATGTGAAGGCTACTA--CGTAGCCGTAA-AA-C-TTGAT
64 ACTAAGTGAAGGCTACTATGTGTA-CC--AAGAAGCTTTGAG
* * * * * *
50314505 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATTG-TAA--AACTGATCACGTGTGTAGTA
1 CACGTATGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAACTAAC-GGTCACATGTGTAGTA
* *
50314567 CTATGTGAAGGCTACTACGTGTA
65 CTAAGTGAAGGCTACTATGTGTA
50314590 TCGAATGATA
Statistics
Matches: 246, Mismatches: 30, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
98 34 0.14
99 46 0.19
100 9 0.04
101 34 0.14
102 120 0.49
103 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (102 bp):
CACGTATGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAACTAACGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCAAGAAGCTTTGAG
Found at i:50314517 original size:49 final size:50
Alignment explanation
Indices: 50314202--50314587 Score: 305
Period size: 51 Copynumber: 7.7 Consensus size: 50
50314192 TATCAATGAA
* * * *
50314202 CACGTATGTAGTACTGTGTGAAGGCTACTACGTGTA-TCGATAAGTAA--TGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AGCCG-TAA--AACTTGAT
* * * * *
50314253 CACATGTGTGGTACTAAGTGAAGGCTACTATGTGTA-CC--AAGAAGCTTTGAG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AGCCGTAA-AA-C-TTGAT
* * * * * * *
50314304 CACGTGTGCAGTACTGTGTGAATGCTACCACGTG-TCTCGGT-AAACTACGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAGC-C-GTAAAACT-TGAT
* * * *
50314355 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTA-CC--AAGAAGCTTTGAG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AGCCGTAA-AA-C-TTGAT
* *
50314406 CACGTCTGTAGTACTGA-GTGAAGGCTACTACGTGAGCCATAAAACTTGAT
1 CACGTGTGTAGTACT-ATGTGAAGGCTACTACGTGAGCCGTAAAACTTGAT
50314456 CACGTGTGTAGTACTATGTGAAGGCTACTACGT-AGCCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGAT
***
50314505 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATTGTAAAAC-TGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGAT
50314554 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
50314588 TATCGAATGA
Statistics
Matches: 273, Mismatches: 40, Indels: 46
0.76 0.11 0.13
Matches are distributed among these distances:
47 2 0.01
48 2 0.01
49 88 0.32
50 47 0.17
51 124 0.45
52 7 0.03
53 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGAT
Found at i:50323945 original size:26 final size:25
Alignment explanation
Indices: 50323916--50323964 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
50323906 AAATTGGACA
50323916 ATTTTACCTCC-GATAAAATTTTGATG
1 ATTTTACC-CCAG-TAAAATTTTGATG
*
50323942 ATTTTTCCCCAGTAAAATTTTGA
1 ATTTTACCCCAGTAAAATTTTGA
50323965 GAAAATCCGC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (25 bp):
ATTTTACCCCAGTAAAATTTTGATG
Found at i:50329090 original size:11 final size:11
Alignment explanation
Indices: 50329076--50329136 Score: 50
Period size: 12 Copynumber: 5.2 Consensus size: 11
50329066 TTGTAATACT
50329076 TTAATTAATTA
1 TTAATTAATTA
* *
50329087 TTAAATAAATA
1 TTAATTAATTA
*
50329098 TTTATTAAATTA
1 TTAATT-AATTA
50329110 TTATATTAAATTA
1 TTA-ATT-AATTA
*
50329123 TTATTGTAATTA
1 TTAAT-TAATTA
50329135 TT
1 TT
50329137 TTATTATTAT
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
11 13 0.32
12 14 0.35
13 13 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (11 bp):
TTAATTAATTA
Found at i:50329118 original size:13 final size:13
Alignment explanation
Indices: 50329082--50329126 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
50329072 TACTTTAATT
*
50329082 AATTATTA-AATA
1 AATTATTATATTA
50329094 AA-TATT-TATTA
1 AATTATTATATTA
50329105 AATTATTATATTA
1 AATTATTATATTA
50329118 AATTATTAT
1 AATTATTAT
50329127 TGTAATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
11 9 0.31
12 6 0.21
13 14 0.48
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
AATTATTATATTA
Found at i:50329133 original size:25 final size:24
Alignment explanation
Indices: 50329070--50329142 Score: 69
Period size: 24 Copynumber: 3.0 Consensus size: 24
50329060 ATACATTTGT
* *
50329070 AATACTTTAATTAATTATTA-AATA
1 AATA-TTTATTTAATTATTATATTA
*
50329094 AATATTTATTAAATTATTATATTA
1 AATATTTATTTAATTATTATATTA
*
50329118 AAT-TATTATTGTAATTATTTTATTA
1 AATAT-TTATT-TAATTATTATATTA
50329143 TTATCATATT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
23 14 0.34
24 15 0.37
25 12 0.29
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (24 bp):
AATATTTATTTAATTATTATATTA
Found at i:50329297 original size:19 final size:20
Alignment explanation
Indices: 50329273--50329316 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
50329263 AAGATATTTA
* *
50329273 TAAATATTAATT-AATTAAT
1 TAAATATAAATTAAATAAAT
50329292 TAAATATAAATTAAATAAAT
1 TAAATATAAATTAAATAAAT
50329312 TAAAT
1 TAAAT
50329317 GGTGCCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
TAAATATAAATTAAATAAAT
Found at i:50329422 original size:19 final size:19
Alignment explanation
Indices: 50329382--50329436 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 19
50329372 CTTGTGTTAT
* * *
50329382 AATTAAAAGA-TATTTATT
1 AATTAAATGATTATTAATA
50329400 AATTAAATGATTATTAATA
1 AATTAAATGATTATTAATA
* *
50329419 AATTATATTATTA-TAATA
1 AATTAAATGATTATTAATA
50329437 TAAAGCAAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
18 14 0.45
19 17 0.55
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (19 bp):
AATTAAATGATTATTAATA
Found at i:50329477 original size:4 final size:5
Alignment explanation
Indices: 50329438--50329499 Score: 51
Period size: 5 Copynumber: 12.4 Consensus size: 5
50329428 ATTATAATAT
*
50329438 AAAGC AAAGA AATA-A AAAGA AAAGA AAAGA AAAG- AAAGA AACA-A AACA-A
1 AAAGA AAAGA AA-AGA AAAGA AAAGA AAAGA AAAGA AAAGA AA-AGA AA-AGA
50329487 AGAAGA AAAGA AA
1 A-AAGA AAAGA AA
50329500 CAGAGAGCAA
Statistics
Matches: 50, Mismatches: 1, Indels: 12
0.79 0.02 0.19
Matches are distributed among these distances:
4 5 0.10
5 40 0.80
6 5 0.10
ACGTcount: A:0.77, C:0.05, G:0.16, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:50331519 original size:449 final size:449
Alignment explanation
Indices: 50330681--50331558 Score: 1573
Period size: 449 Copynumber: 2.0 Consensus size: 449
50330671 TTGCTTCGAA
* *
50330681 CCATACTAGAGTGTTTGGTTGGATCCGTGTATCCGTCAAAGTCCGAGTTTTGCTAATAGGGTAAA
1 CCATACTAGAGTGTTTGGTTGGATCCGTGTATCCGCCAAAATCCGAGTTTTGCTAATAGGGTAAA
*
50330746 TAATGAAATGATAAACCGAATGAGGTGATCAATAAAGCTACTGAAATGAGAAGAAAAGGTTAAAT
66 TAATGAAATGATAAACCGAATGAGGTGATCAATAAAGCCACTGAAATGAGAAGAAAAGGTTAAAT
*
50330811 TGTGAATTGAAATGTGATATGAGATTGAAGAATGAACCTAAGGTTCATGATGTGTCCAAGTTCAA
131 TGTGAATTGAAATGTGATATGAGATTGAAGAATGAACCTAAGGTTCATGATGTGTACAAGTTCAA
*
50330876 ATTGTGGATATATGAAATTAATTGATAAATTGTTATTGTTGAAATATGAAATTTAAGTTTAAATC
196 ATTGGGGATATATGAAATTAATTGATAAATTGTTATTGTTGAAATATGAAATTTAAGTTTAAATC
50330941 TGTATGTATGATTTTATACATTATATGTTTATTAATATTATAATTTGAATTATGGTAATACCACT
261 TGTATGTATGATTTTATACATTATATGTTTATTAATATTATAATTTGAATTATGGTAATACCACT
50331006 GAGTATGAAATACTCAGCATGCGGTTGTTTCTGTGTGCAGGTTATTAGAGTTCTAGGTCTAGTTC
326 GAGTATGAAATACTCAGCATGCGGTTGTTTCTGTGTGCAGGTTATTAGAGTTCTAGGTCTAGTTC
50331071 AGCATCCAGAAAGATCCTGACTCCATCAAGAAAATTTTAATCCGATGAGGCACTGGGTG
391 AGCATCCAGAAAGATCCTGACTCCATCAAGAAAATTTTAATCCGATGAGGCACTGGGTG
* *
50331130 CCATACTGGAGTGTTTGGTTGGATCCGTGTATCCGCCAAAATCCGAGTTTTGTTAATAGGGTAAA
1 CCATACTAGAGTGTTTGGTTGGATCCGTGTATCCGCCAAAATCCGAGTTTTGCTAATAGGGTAAA
** * ** * *
50331195 TAATGAAATGATAAATTGAATGAGTTGATCAATCGAGCCATTGAAATGA-AATGAAAA-GTTGAA
66 TAATGAAATGATAAACCGAATGAGGTGATCAATAAAGCCACTGAAATGAGAA-GAAAAGGTTAAA
50331258 TTGTGAATTGAAATGTGATATGAGATTG-AGAAATGAACCTAAGGTTCATGATGTGTACAAGTTT
130 TTGTGAATTGAAATGTGATATGAGATTGAAG-AATGAACCTAAGGTTCATGATGTGTACAAG-TT
*
50331322 TAAATTGGGGATATATGAAATTAATTGATAAATTGTTATTGTTGAAATATGAAATTTAAGTTTAA
193 CAAATTGGGGATATATGAAATTAATTGATAAATTGTTATTGTTGAAATATGAAATTTAAGTTTAA
50331387 ATCTGTATGTATGATTTTATACATTATATGTTTATTAATATTATAATTTGAATTATGGTAATACC
258 ATCTGTATGTATGATTTTATACATTATATGTTTATTAATATTATAATTTGAATTATGGTAATACC
50331452 ACTGAGTATGAAATACTCAGCATGCGGTTGTTTCTGTGTGCAGGTTATTAGAGTTCTAGGTCTAG
323 ACTGAGTATGAAATACTCAGCATGCGGTTGTTTCTGTGTGCAGGTTATTAGAGTTCTAGGTCTAG
50331517 TTCAGCATCCAGAAAGATCCTGACTCCATCAAGAAAATTTTA
388 TTCAGCATCCAGAAAGATCCTGACTCCATCAAGAAAATTTTA
50331559 GTGATGTATT
Statistics
Matches: 411, Mismatches: 15, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
447 2 0.00
448 64 0.16
449 345 0.84
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (449 bp):
CCATACTAGAGTGTTTGGTTGGATCCGTGTATCCGCCAAAATCCGAGTTTTGCTAATAGGGTAAA
TAATGAAATGATAAACCGAATGAGGTGATCAATAAAGCCACTGAAATGAGAAGAAAAGGTTAAAT
TGTGAATTGAAATGTGATATGAGATTGAAGAATGAACCTAAGGTTCATGATGTGTACAAGTTCAA
ATTGGGGATATATGAAATTAATTGATAAATTGTTATTGTTGAAATATGAAATTTAAGTTTAAATC
TGTATGTATGATTTTATACATTATATGTTTATTAATATTATAATTTGAATTATGGTAATACCACT
GAGTATGAAATACTCAGCATGCGGTTGTTTCTGTGTGCAGGTTATTAGAGTTCTAGGTCTAGTTC
AGCATCCAGAAAGATCCTGACTCCATCAAGAAAATTTTAATCCGATGAGGCACTGGGTG
Found at i:50331947 original size:222 final size:222
Alignment explanation
Indices: 50331561--50332003 Score: 868
Period size: 222 Copynumber: 2.0 Consensus size: 222
50331551 AAATTTTAGT
*
50331561 GATGTATTTCTTCCTTTTGTTTAAGTGGCATGTACTAGGTGATTGTACATGAGTCGTATATATAT
1 GATGTATTTCTTCCTTTTGTTTAAGTGGCATGTACTAGGTGATTGTACATGAGTCATATATATAT
50331626 ATATACTAAATGATCTTAGTTGTAAGTAATGGTTATAATCTTTTGAATGATAAATAAAGTAGTGA
66 ATATACTAAATGATCTTAGTTGTAAGTAATGGTTATAATCTTTTGAATGATAAATAAAGTAGTGA
*
50331691 ATCAATTTATTAAGCATGATTTAGTAGCGTTTTAAAGTATAAAATTATTGATTGAAATATTGGTA
131 ATCAATTTATTAAGCATGATTAAGTAGCGTTTTAAAGTATAAAATTATTGATTGAAATATTGGTA
50331756 TTGGGTTGTTTTTGGTTTTAAGTTTGC
196 TTGGGTTGTTTTTGGTTTTAAGTTTGC
50331783 GATGTATTTCTTCCTTTTGTTTAAGTGGCATGTACTAGGTGATTGTACATGAGTCATATATATAT
1 GATGTATTTCTTCCTTTTGTTTAAGTGGCATGTACTAGGTGATTGTACATGAGTCATATATATAT
50331848 ATATACTAAATGATCTTAGTTGTAAGTAATGGTTATAATCTTTTGAATGATAAATAAAGTAGTGA
66 ATATACTAAATGATCTTAGTTGTAAGTAATGGTTATAATCTTTTGAATGATAAATAAAGTAGTGA
50331913 ATCAATTTATTAAGCATGATTAAGTAGCGTTTTAAAGTATAAAATTATTGATTGAAATATTGGTA
131 ATCAATTTATTAAGCATGATTAAGTAGCGTTTTAAAGTATAAAATTATTGATTGAAATATTGGTA
50331978 TTGGGTTGTTTTTGGTTTTAAGTTTG
196 TTGGGTTGTTTTTGGTTTTAAGTTTG
50332004 TAGGGGGTTT
Statistics
Matches: 219, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
222 219 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (222 bp):
GATGTATTTCTTCCTTTTGTTTAAGTGGCATGTACTAGGTGATTGTACATGAGTCATATATATAT
ATATACTAAATGATCTTAGTTGTAAGTAATGGTTATAATCTTTTGAATGATAAATAAAGTAGTGA
ATCAATTTATTAAGCATGATTAAGTAGCGTTTTAAAGTATAAAATTATTGATTGAAATATTGGTA
TTGGGTTGTTTTTGGTTTTAAGTTTGC
Found at i:50335838 original size:5 final size:5
Alignment explanation
Indices: 50335828--50335856 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
50335818 TTTAGGGGTT
50335828 TGTTA TGTTA TGTTA TGTTA TGTTA TGTT
1 TGTTA TGTTA TGTTA TGTTA TGTTA TGTT
50335857 TTTTTTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.21, T:0.62
Consensus pattern (5 bp):
TGTTA
Found at i:50338146 original size:12 final size:12
Alignment explanation
Indices: 50338129--50338153 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50338119 GGATAAACTA
50338129 ATATTTAGTTTT
1 ATATTTAGTTTT
50338141 ATATTTAGTTTT
1 ATATTTAGTTTT
50338153 A
1 A
50338154 AAGTTAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (12 bp):
ATATTTAGTTTT
Found at i:50338710 original size:13 final size:13
Alignment explanation
Indices: 50338694--50338718 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50338684 TAATTAAAGG
50338694 GTTAAAATTTAAT
1 GTTAAAATTTAAT
50338707 GTTAAAATTTAA
1 GTTAAAATTTAA
50338719 AGATGATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
GTTAAAATTTAAT
Found at i:50338786 original size:9 final size:9
Alignment explanation
Indices: 50338772--50338871 Score: 50
Period size: 9 Copynumber: 11.6 Consensus size: 9
50338762 AACTTTGGAT
50338772 CATAACTTA
1 CATAACTTA
50338781 CATAACTTA
1 CATAACTTA
50338790 CATAA--TA
1 CATAACTTA
*
50338797 CATAA-ATA
1 CATAACTTA
* * *
50338805 TATATCATA
1 CATAACTTA
*
50338814 TCATAACTTG
1 -CATAACTTA
50338824 CATAACTTA
1 CATAACTTA
*
50338833 TATAA--TA
1 CATAACTTA
*
50338840 CATAA-ATA
1 CATAACTTA
* * *
50338848 TATATCATA
1 CATAACTTA
50338857 TCATAACTTA
1 -CATAACTTA
50338867 CATAA
1 CATAA
50338872 ATATATAAAA
Statistics
Matches: 71, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
7 13 0.18
8 10 0.14
9 37 0.52
10 11 0.15
ACGTcount: A:0.48, C:0.16, G:0.01, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:50338817 original size:43 final size:43
Alignment explanation
Indices: 50338770--50338871 Score: 186
Period size: 43 Copynumber: 2.4 Consensus size: 43
50338760 AAAACTTTGG
50338770 ATCATAACTTACATAACTTACATAATACATAAATATATATCAT
1 ATCATAACTTACATAACTTACATAATACATAAATATATATCAT
* *
50338813 ATCATAACTTGCATAACTTATATAATACATAAATATATATCAT
1 ATCATAACTTACATAACTTACATAATACATAAATATATATCAT
50338856 ATCATAACTTACATAA
1 ATCATAACTTACATAA
50338872 ATATATAAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.48, C:0.16, G:0.01, T:0.35
Consensus pattern (43 bp):
ATCATAACTTACATAACTTACATAATACATAAATATATATCAT
Found at i:50343006 original size:11 final size:11
Alignment explanation
Indices: 50342972--50343006 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
50342962 GTTGTTGTTG
50342972 TTTTACTATTA
1 TTTTACTATTA
*
50342983 TATTACTATTA
1 TTTTACTATTA
*
50342994 TTTTATTATTA
1 TTTTACTATTA
50343005 TT
1 TT
50343007 GTTTGGATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.66
Consensus pattern (11 bp):
TTTTACTATTA
Found at i:50343916 original size:22 final size:22
Alignment explanation
Indices: 50343888--50343929 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
50343878 TTCCAAACAA
50343888 TAATAACAAAATAGTAGCAATG
1 TAATAACAAAATAGTAGCAATG
50343910 TAATAACAAAATAGTAGCAA
1 TAATAACAAAATAGTAGCAA
50343930 AACAAAGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.10, G:0.12, T:0.21
Consensus pattern (22 bp):
TAATAACAAAATAGTAGCAATG
Found at i:50353713 original size:6 final size:6
Alignment explanation
Indices: 50353671--50353702 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
50353661 AGAGAGAAAT
50353671 AGAGTG AGAGTG AGAGTG AGAGTG AGAGTG AG
1 AGAGTG AGAGTG AGAGTG AGAGTG AGAGTG AG
50353703 TGAAAGTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.50, T:0.16
Consensus pattern (6 bp):
AGAGTG
Found at i:50354871 original size:24 final size:24
Alignment explanation
Indices: 50354856--50354904 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
50354846 AATCAATGTC
*
50354856 AAATATATTATGCTAATAAATACT
1 AAATATATTATACTAATAAATACT
50354880 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATACT
50354904 A
1 A
50354905 CATCTTCTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.08, G:0.02, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Done.