Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 167 of 187
Found at i:50663482 original size:125 final size:124
Alignment explanation
Indices: 50663252--50663675 Score: 564
Period size: 125 Copynumber: 3.4 Consensus size: 124
50663242 ACGTGGACGT
* * * * *
50663252 GAAGAATTTGTGAAATCGCGCCCTCCTGGACGCACTTTTGTTACAGTTGGTCCTGGAAGAAATAA
1 GAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAA
* *
50663317 TTCCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTA-CTAGAATGCTCTATGA
66 TTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC-AG-ATGCTATATGA
* * *
50663377 GAAGAATTTGTTAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCT-GAAAAAATTA
1 GAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAA
* * * *
50663441 TTTCGAGTTAACGTTTCTGAGCAAATAGTATAAAAAGCGCTTCAAGCAGGATGCTATTTGA
66 TTTCGAGTTGACGTTTCTGAGCAAATAGTAT-AAAATCGCTTCTAGCA-GATGCTATATGA
* * * * *
50663502 GAAGAATTTCTGAAATCACGCCCTCGTGGACGCGCTTTTGCTACAGTTGGTCTTGGAAGAAATAA
1 GAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAA
* * * * * *
50663567 TTTTGAGTTGATGTTTCTGAGCAAATAGTATAAAATCGCTTCTATCAAGATACTTTATTA
66 TTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC-AGATGCTATATGA
50663627 GAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAG
1 GAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAG
50663676 CATGTTTGGG
Statistics
Matches: 258, Mismatches: 36, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
124 37 0.14
125 182 0.71
126 39 0.15
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (124 bp):
GAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAA
TTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGATGCTATATGA
Found at i:50677974 original size:17 final size:19
Alignment explanation
Indices: 50677949--50677992 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
50677939 TATAAGAATA
*
50677949 ATTATATTAAGA-A-TTTT
1 ATTAAATTAAGATATTTTT
50677966 ATTAAATT-AGATATTTTT
1 ATTAAATTAAGATATTTTT
50677984 ATTAAATTA
1 ATTAAATTA
50677993 TATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (19 bp):
ATTAAATTAAGATATTTTT
Found at i:50678244 original size:45 final size:44
Alignment explanation
Indices: 50678155--50678247 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
50678145 ATTACAACAT
* *
50678155 CATTCCATTCAACCAAACACAAGAATACTATTGCAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTC
*
50678199 CATTCCATTCAACCAAACA-ATTGAATTACTATTACAGCTCTATTC
1 CATTCCATTCAACCAAACACA-AGAA-TACTATTACAGCTCTATTC
50678244 CATT
1 CATT
50678248 ACACATCTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 22 0.50
45 21 0.48
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTC
Found at i:50678250 original size:16 final size:17
Alignment explanation
Indices: 50678229--50678268 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
50678219 TTGAATTACT
50678229 ATTACAGC-TCTATTCC
1 ATTACAGCATCTATTCC
50678245 ATTACA-CATCTATTCC
1 ATTACAGCATCTATTCC
50678261 ATTACAGC
1 ATTACAGC
50678269 GAACCAAACG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.05
16 20 0.91
17 1 0.05
ACGTcount: A:0.30, C:0.30, G:0.05, T:0.35
Consensus pattern (17 bp):
ATTACAGCATCTATTCC
Found at i:50678452 original size:4 final size:4
Alignment explanation
Indices: 50678443--50678470 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
50678433 AAGTGATGAG
50678443 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
50678471 TACTCTCGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:50679000 original size:25 final size:25
Alignment explanation
Indices: 50678971--50679027 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
50678961 TTAAAGTTAT
50678971 TTAAAATTTAAAAA-AAAATTAAAAA
1 TTAAAATTTAAAAAGAAAA-TAAAAA
* *
50678996 TTAAAAATTAAAAAGTAAATAAAAA
1 TTAAAATTTAAAAAGAAAATAAAAA
*
50679021 TAAAAAT
1 TTAAAAT
50679028 ATTCTTTACC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 24 0.89
26 3 0.11
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (25 bp):
TTAAAATTTAAAAAGAAAATAAAAA
Found at i:50679003 original size:14 final size:14
Alignment explanation
Indices: 50678984--50679014 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
50678974 AAATTTAAAA
*
50678984 AAAAATTAAAAATT
1 AAAAATTAAAAAGT
50678998 AAAAATTAAAAAGT
1 AAAAATTAAAAAGT
50679012 AAA
1 AAA
50679015 TAAAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (14 bp):
AAAAATTAAAAAGT
Found at i:50679950 original size:9 final size:9
Alignment explanation
Indices: 50679930--50679965 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
50679920 ACCGAAGAAA
*
50679930 CATCATCCT
1 CATCGTCCT
*
50679939 CATCGTCTT
1 CATCGTCCT
50679948 CATCGTCCT
1 CATCGTCCT
50679957 CATCGTCCT
1 CATCGTCCT
50679966 TTTTGCAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.14, C:0.42, G:0.08, T:0.36
Consensus pattern (9 bp):
CATCGTCCT
Found at i:50684436 original size:22 final size:22
Alignment explanation
Indices: 50684411--50684460 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
50684401 GTGGAGCCGT
50684411 GGAGGACCGGAGGTGGATCGGC
1 GGAGGACCGGAGGTGGATCGGC
**
50684433 GGAGGATTGGAGGTGGATCGGC
1 GGAGGACCGGAGGTGGATCGGC
50684455 GGAGGA
1 GGAGGA
50684461 TTGGTGTCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.20, C:0.12, G:0.56, T:0.12
Consensus pattern (22 bp):
GGAGGACCGGAGGTGGATCGGC
Found at i:50684461 original size:22 final size:22
Alignment explanation
Indices: 50684419--50684464 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
50684409 GTGGAGGACC
50684419 GGAGGTGGATCGGCGGAGGATT
1 GGAGGTGGATCGGCGGAGGATT
50684441 GGAGGTGGATCGGCGGAGGATT
1 GGAGGTGGATCGGCGGAGGATT
50684463 GG
1 GG
50684465 TGTCGGAGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.17, C:0.09, G:0.57, T:0.17
Consensus pattern (22 bp):
GGAGGTGGATCGGCGGAGGATT
Found at i:50699375 original size:15 final size:15
Alignment explanation
Indices: 50699355--50699385 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
50699345 AAGCCAAGAC
50699355 TTGGGCAAATTTTGG
1 TTGGGCAAATTTTGG
50699370 TTGGGCAAATTTTGG
1 TTGGGCAAATTTTGG
50699385 T
1 T
50699386 ATTTTTATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.32, T:0.42
Consensus pattern (15 bp):
TTGGGCAAATTTTGG
Found at i:50702462 original size:16 final size:15
Alignment explanation
Indices: 50702442--50702489 Score: 64
Period size: 14 Copynumber: 3.2 Consensus size: 15
50702432 AGTAAAAAAT
50702442 AATATAAATTTTAT-
1 AATATAAATTTTATA
50702456 AATATATAATCTTTATA
1 AATATA-AAT-TTTATA
50702473 AATA-AAATTTTATA
1 AATATAAATTTTATA
50702487 AAT
1 AAT
50702490 GGTTGAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
14 15 0.48
15 6 0.19
16 6 0.19
17 4 0.13
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
AATATAAATTTTATA
Found at i:50702488 original size:14 final size:14
Alignment explanation
Indices: 50702442--50702489 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 14
50702432 AGTAAAAAAT
50702442 AATATAAATTTTATA
1 AATA-AAATTTTATA
*
50702457 ATATATAATCTTTATA
1 A-ATAAAAT-TTTATA
50702473 AATAAAATTTTATA
1 AATAAAATTTTATA
50702487 AAT
1 AAT
50702490 GGTTGAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
14 9 0.31
15 10 0.34
16 10 0.34
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (14 bp):
AATAAAATTTTATA
Found at i:50702581 original size:21 final size:22
Alignment explanation
Indices: 50702539--50702596 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
50702529 TTTTATAGAT
* *
50702539 AAATTTTGATAAAGAAATTATA
1 AAATTTTTATAAATAAATTATA
*
50702561 AAATTTTTATTAATAAA-TATA
1 AAATTTTTATAAATAAATTATA
**
50702582 TTATTTTTATAAATA
1 AAATTTTTATAAATA
50702597 TAACATGAAC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 16 0.53
22 14 0.47
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (22 bp):
AAATTTTTATAAATAAATTATA
Found at i:50717728 original size:171 final size:171
Alignment explanation
Indices: 50717443--50717774 Score: 664
Period size: 171 Copynumber: 1.9 Consensus size: 171
50717433 TTACCCAAAA
50717443 TTTGAGCTAGTGGTTGGCCATGCTATGGGTGGAAACATGTTGGGAACATGTTGGCCTAGTGAGGT
1 TTTGAGCTAGTGGTTGGCCATGCTATGGGTGGAAACATGTTGGGAACATGTTGGCCTAGTGAGGT
50717508 ATGTAGGAAAAAAATAAAATAAGGGGCATGGGCATAAAATAATGAAAAGGAGTATGATGAATACA
66 ATGTAGGAAAAAAATAAAATAAGGGGCATGGGCATAAAATAATGAAAAGGAGTATGATGAATACA
50717573 AAAAAAAATGTGTGTAGTTGTTTCCCCCCCCCCCATTGCCG
131 AAAAAAAATGTGTGTAGTTGTTTCCCCCCCCCCCATTGCCG
50717614 TTTGAGCTAGTGGTTGGCCATGCTATGGGTGGAAACATGTTGGGAACATGTTGGCCTAGTGAGGT
1 TTTGAGCTAGTGGTTGGCCATGCTATGGGTGGAAACATGTTGGGAACATGTTGGCCTAGTGAGGT
50717679 ATGTAGGAAAAAAATAAAATAAGGGGCATGGGCATAAAATAATGAAAAGGAGTATGATGAATACA
66 ATGTAGGAAAAAAATAAAATAAGGGGCATGGGCATAAAATAATGAAAAGGAGTATGATGAATACA
50717744 AAAAAAAATGTGTGTAGTTGTTTCCCCCCCC
131 AAAAAAAATGTGTGTAGTTGTTTCCCCCCCC
50717775 ATTGCCGTGA
Statistics
Matches: 161, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
171 161 1.00
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (171 bp):
TTTGAGCTAGTGGTTGGCCATGCTATGGGTGGAAACATGTTGGGAACATGTTGGCCTAGTGAGGT
ATGTAGGAAAAAAATAAAATAAGGGGCATGGGCATAAAATAATGAAAAGGAGTATGATGAATACA
AAAAAAAATGTGTGTAGTTGTTTCCCCCCCCCCCATTGCCG
Found at i:50719044 original size:39 final size:40
Alignment explanation
Indices: 50718949--50719171 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
50718939 TTGAATGATG
*
50718949 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
50718987 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
50719028 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
50719067 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
50719106 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
50719145 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
50719172 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:50719135 original size:79 final size:81
Alignment explanation
Indices: 50718949--50719171 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
50718939 TTGAATGATG
* * *
50718949 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
50719011 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
50719028 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
50719089 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
50719106 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
50719170 TG
66 TG
50719172 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:50719193 original size:79 final size:79
Alignment explanation
Indices: 50718949--50719204 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
50718939 TTGAATGATG
* * * *
50718949 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
50719010 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
50719028 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
50719092 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
50719106 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
50719169 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
50719186 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
50719205 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:50723142 original size:7 final size:7
Alignment explanation
Indices: 50723132--50723182 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
50723122 ATCAAGTATT
*
50723132 GAAACAA
1 GAAAAAA
50723139 GAAAAAA
1 GAAAAAA
50723146 G--AAAA
1 GAAAAAA
50723151 -AAAAAA
1 GAAAAAA
50723157 GAAAAAA
1 GAAAAAA
50723164 GAAAAAA
1 GAAAAAA
*
50723171 AAAACAAA
1 GAAA-AAA
50723179 GAAA
1 GAAA
50723183 GAAAATGAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
5 4 0.11
6 4 0.11
7 23 0.62
8 6 0.16
ACGTcount: A:0.84, C:0.04, G:0.12, T:0.00
Consensus pattern (7 bp):
GAAAAAA
Found at i:50723156 original size:11 final size:11
Alignment explanation
Indices: 50723140--50723187 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
50723130 TTGAAACAAG
50723140 AAAAAAGAAAA
1 AAAAAAGAAAA
50723151 AAAAAAGAAAA
1 AAAAAAGAAAA
50723162 AAGAAAA-AAAA
1 AA-AAAAGAAAA
*
50723173 AACAAAGAAAGA
1 AAAAAAGAAA-A
50723185 AAA
1 AAA
50723188 TGAATAAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
10 3 0.09
11 22 0.69
12 7 0.22
ACGTcount: A:0.88, C:0.02, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:50723160 original size:18 final size:18
Alignment explanation
Indices: 50723137--50723187 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
50723127 GTATTGAAAC
50723137 AAGAAAAAAGAAAAAAAA
1 AAGAAAAAAGAAAAAAAA
50723155 AAGAAAAAAGAAAAAAAA
1 AAGAAAAAAGAAAAAAAA
*
50723173 AACAAAGAAAGAAAA
1 AAGAAA-AAAGAAAA
50723188 TGAATAAGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 23 0.74
19 8 0.26
ACGTcount: A:0.86, C:0.02, G:0.12, T:0.00
Consensus pattern (18 bp):
AAGAAAAAAGAAAAAAAA
Found at i:50723166 original size:25 final size:26
Alignment explanation
Indices: 50723132--50723187 Score: 80
Period size: 25 Copynumber: 2.2 Consensus size: 26
50723122 ATCAAGTATT
*
50723132 GAAACAAGAAAAAAGAAAA-AAA-AAA
1 GAAAAAAGAAAAAA-AAAACAAAGAAA
50723157 GAAAAAAGAAAAAAAAAACAAAGAAA
1 GAAAAAAGAAAAAAAAAACAAAGAAA
50723183 GAAAA
1 GAAAA
50723188 TGAATAAGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 4 0.14
25 16 0.57
26 8 0.29
ACGTcount: A:0.84, C:0.04, G:0.12, T:0.00
Consensus pattern (26 bp):
GAAAAAAGAAAAAAAAAACAAAGAAA
Found at i:50723170 original size:15 final size:15
Alignment explanation
Indices: 50723140--50723187 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
50723130 TTGAAACAAG
*
50723140 AAAAAAGAAA-AAAA
1 AAAAAACAAAGAAAA
50723154 AAAGAAA-AAAGAAAA
1 AAA-AAACAAAGAAAA
50723169 AAAAAACAAAGAAAGA
1 AAAAAACAAAGAAA-A
50723185 AAA
1 AAA
50723188 TGAATAAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 9 0.30
15 17 0.57
16 4 0.13
ACGTcount: A:0.88, C:0.02, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAACAAAGAAAA
Found at i:50728709 original size:57 final size:57
Alignment explanation
Indices: 50728621--50728768 Score: 296
Period size: 57 Copynumber: 2.6 Consensus size: 57
50728611 GATGCCATGT
50728621 TTTATTATGTTTTAAGTTTTCCATGTTGAGGTGAAACCTCTATAAATTGCCTTTAGA
1 TTTATTATGTTTTAAGTTTTCCATGTTGAGGTGAAACCTCTATAAATTGCCTTTAGA
50728678 TTTATTATGTTTTAAGTTTTCCATGTTGAGGTGAAACCTCTATAAATTGCCTTTAGA
1 TTTATTATGTTTTAAGTTTTCCATGTTGAGGTGAAACCTCTATAAATTGCCTTTAGA
50728735 TTTATTATGTTTTAAGTTTTCCATGTTGAGGTGA
1 TTTATTATGTTTTAAGTTTTCCATGTTGAGGTGA
50728769 CTTTTGGAAA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 91 1.00
ACGTcount: A:0.25, C:0.11, G:0.17, T:0.47
Consensus pattern (57 bp):
TTTATTATGTTTTAAGTTTTCCATGTTGAGGTGAAACCTCTATAAATTGCCTTTAGA
Found at i:50730861 original size:30 final size:30
Alignment explanation
Indices: 50730826--50730884 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
50730816 ATTTTATTGC
50730826 TAATTTTAG-TATTATTTTAAAGACATTTGT
1 TAATTTT-GTTATTATTTTAAAGACATTTGT
*
50730856 TAATTTTGTTATTATTTTAGAGACATTTG
1 TAATTTTGTTATTATTTTAAAGACATTTG
50730885 ATTGTTAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.31, C:0.03, G:0.12, T:0.54
Consensus pattern (30 bp):
TAATTTTGTTATTATTTTAAAGACATTTGT
Found at i:50739883 original size:24 final size:23
Alignment explanation
Indices: 50739856--50740038 Score: 79
Period size: 24 Copynumber: 7.7 Consensus size: 23
50739846 ACACACTTTA
50739856 GCTCTTATGAGCTTCCCGATTATG
1 GCTCTTATGAGCTTCCCG-TTATG
* *
50739880 GCTCTTCATGAGCTTCTCGTTAATTT
1 GCTCTT-ATGAGCTTCCCGTT-A-TG
* *
50739906 GCTCTTTGTGAGCTTCCCGATATG
1 GCTC-TTATGAGCTTCCCGTTATG
*
50739930 G--C-T-TGAACTTCCCGATATATG
1 GCTCTTATGAGCTTCCCG-T-TATG
* * *** *
50739951 GTTATCCGGAGCTTCCTGTTAATG
1 GCTCTTATGAGCTTCCCGTT-ATG
* *
50739975 GCTCTT-CGAAGCTACCCGTTATTG
1 GCTCTTATG-AGCTTCCCGTTA-TG
* * * *
50739999 GCTCGTATGAGCTTTCCGGCTATA
1 GCTCTTATGAGC-TTCCCGTTATG
50740023 GCTCTTATGAGCTTCC
1 GCTCTTATGAGCTTCC
50740039 TGTTTTAGCC
Statistics
Matches: 118, Mismatches: 26, Indels: 31
0.67 0.15 0.18
Matches are distributed among these distances:
19 10 0.08
20 1 0.01
21 5 0.04
22 1 0.01
23 7 0.06
24 48 0.41
25 28 0.24
26 16 0.14
27 2 0.02
ACGTcount: A:0.16, C:0.25, G:0.21, T:0.37
Consensus pattern (23 bp):
GCTCTTATGAGCTTCCCGTTATG
Found at i:50758415 original size:25 final size:25
Alignment explanation
Indices: 50758387--50758434 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50758377 TAGCTATGTT
50758387 CTGACCCACAGCTCATGTGAGCATA
1 CTGACCCACAGCTCATGTGAGCATA
** *
50758412 CTGATTCACAGCTTATGTGAGCA
1 CTGACCCACAGCTCATGTGAGCA
50758435 GACATGTACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (25 bp):
CTGACCCACAGCTCATGTGAGCATA
Found at i:50764249 original size:377 final size:379
Alignment explanation
Indices: 50763550--50764308 Score: 1378
Period size: 377 Copynumber: 2.0 Consensus size: 379
50763540 AACAAATACA
50763550 AAATAATTATATGCAATGTATTAATCAAAATCTCAATTAAATATCATTACATCACATATGATCAA
1 AAATAATTATATGCAATGTATTAATCAAAATCTCAATTAAATATCATTACATCACATATGATCAA
* *
50763615 GTAAAACATGTAATTCAATCAATTTCAGGTCTCTATCAAGCTTAAAAAAGCTTAAAAATAAGCCT
66 GTAAAACATGTAATGCAATCAATTTCAGGTCTATATCAAGCTTAAAAAAGCTTAAAAATAAGCCT
50763680 TATCAAACATTGATCAATTTTGGAACAAAAACAAAAAGATAGGAAAAAACCTATAAATAGGAGTC
131 TATCAAACATTGATCAATTTTGGAACAAAAACAAAAAGATAGGAAAAAACCTATAAATAGGAGTC
* **
50763745 ACAGAACTGTGTATTGTAACATCGCTAACTCGTATCCATCGTCGAAATAGGGTTACGGAGTATTA
196 ACAGAACCGTGTATTGTAACATCGCTAACTCGTATCCATCGTCGAAATAGGGTTACAAAGTATTA
50763810 CTGTAAAAACATAACATTGAAATATACATTTCATATATTAATATAAACATCGTATAAAACATTCA
261 CTGTAAAAACATAACATTGAAATATACATTTCATATATTAATATAAACATCGTATAAAACATTCA
*
50763875 TTCACATACAAACCGTCCCTAAATCGAGCCCTCGAGGACCTAAATATACTTTAG
326 TTCACATACAAACCGTCCCTAAATCGAGCCCTCGAGGACATAAATATACTTTAG
50763929 AAATAATTATATGCAATGTATTAATCAAAATCTCAATTAAATATCATTACATCACATATGATCAA
1 AAATAATTATATGCAATGTATTAATCAAAATCTCAATTAAATATCATTACATCACATATGATCAA
* * *
50763994 GTAAAACATGTAATGCAATCAATTTCAGGTTTATATCGAGCTTACAAAAGCTTAAAAATAAGCCT
66 GTAAAACATGTAATGCAATCAATTTCAGGTCTATATCAAGCTTAAAAAAGCTTAAAAATAAGCCT
* *
50764059 TATCAAACATTGATCAA-TTTGGAACAAAAACAAAAATATAGGAAAAAA-CTGTAAATAGGAGTC
131 TATCAAACATTGATCAATTTTGGAACAAAAACAAAAAGATAGGAAAAAACCTATAAATAGGAGTC
*
50764122 ACAGAACCGTGTATTGTAACATCGCTAACTCGTATCCGTCGTCGAAATAGGGTTACAAAGTATTA
196 ACAGAACCGTGTATTGTAACATCGCTAACTCGTATCCATCGTCGAAATAGGGTTACAAAGTATTA
* *
50764187 CTGTAAAAACATAACATTGAAATATGCATTTCATATATTAATATAAACATGGTATAAAACATTCA
261 CTGTAAAAACATAACATTGAAATATACATTTCATATATTAATATAAACATCGTATAAAACATTCA
50764252 TTCACATACAAACCGTCCCTAAATCGAGCCCTCGAGGACATAAATATACTTTAG
326 TTCACATACAAACCGTCCCTAAATCGAGCCCTCGAGGACATAAATATACTTTAG
50764306 AAA
1 AAA
50764309 CAATCCGAGA
Statistics
Matches: 366, Mismatches: 14, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
377 194 0.53
378 30 0.08
379 142 0.39
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (379 bp):
AAATAATTATATGCAATGTATTAATCAAAATCTCAATTAAATATCATTACATCACATATGATCAA
GTAAAACATGTAATGCAATCAATTTCAGGTCTATATCAAGCTTAAAAAAGCTTAAAAATAAGCCT
TATCAAACATTGATCAATTTTGGAACAAAAACAAAAAGATAGGAAAAAACCTATAAATAGGAGTC
ACAGAACCGTGTATTGTAACATCGCTAACTCGTATCCATCGTCGAAATAGGGTTACAAAGTATTA
CTGTAAAAACATAACATTGAAATATACATTTCATATATTAATATAAACATCGTATAAAACATTCA
TTCACATACAAACCGTCCCTAAATCGAGCCCTCGAGGACATAAATATACTTTAG
Found at i:50769931 original size:14 final size:15
Alignment explanation
Indices: 50769892--50769937 Score: 67
Period size: 16 Copynumber: 3.1 Consensus size: 15
50769882 AGAGTTGAGA
*
50769892 GAGAGGATGAGAGAT
1 GAGAGGATGAGGGAT
50769907 GAGAAGGATGAGGGAT
1 GAG-AGGATGAGGGAT
50769923 GAG-GGATGAGGGAT
1 GAGAGGATGAGGGAT
50769937 G
1 G
50769938 CTTAAAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 12 0.41
15 3 0.10
16 14 0.48
ACGTcount: A:0.35, C:0.00, G:0.52, T:0.13
Consensus pattern (15 bp):
GAGAGGATGAGGGAT
Found at i:50770381 original size:23 final size:22
Alignment explanation
Indices: 50770338--50770388 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
50770328 TTTAACCACT
50770338 TTAATT-AATCAATTTACTTAA
1 TTAATTAAATCAATTTACTTAA
50770359 TTAATTAAACTCAATTTTA-TTAA
1 TTAATTAAA-TCAA-TTTACTTAA
*
50770382 TAAATTA
1 TTAATTA
50770389 TTAAAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 6 0.23
22 2 0.08
23 14 0.54
24 4 0.15
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (22 bp):
TTAATTAAATCAATTTACTTAA
Found at i:50778699 original size:11 final size:11
Alignment explanation
Indices: 50778683--50778708 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
50778673 TAAAGCAAAG
50778683 GTTAAATTAAA
1 GTTAAATTAAA
50778694 GTTAAATTAAA
1 GTTAAATTAAA
50778705 GTTA
1 GTTA
50778709 GCTAAATTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (11 bp):
GTTAAATTAAA
Found at i:50784290 original size:42 final size:43
Alignment explanation
Indices: 50784148--50784297 Score: 155
Period size: 42 Copynumber: 3.6 Consensus size: 43
50784138 AACCGTTACT
* * *
50784148 CGGTGGAATCAGCACTTAGCAACCACC-TTATATTCAGTGATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAATGATA
* * * * *
50784190 CGG-GGAATGATCACATAACAACC-CCTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTT-ACAATCAATGATA
* * *
50784232 CGGTGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATT
1 CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAATGATA
*
50784275 CGG-GGAATCAACACTTAGCAACC
1 CGGTGGAATCAGCACTTAGCAACC
50784298 CCTCGGAGAA
Statistics
Matches: 87, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
40 2 0.02
41 18 0.21
42 34 0.39
43 28 0.32
44 5 0.06
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (43 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAATGATA
Found at i:50784303 original size:26 final size:26
Alignment explanation
Indices: 50784274--50784326 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
50784264 AATCAATAAT
* *
50784274 TCGGGGAATCAACACTTAGCAACCCC
1 TCGGAGAATCAACACTTAGAAACCCC
**
50784300 TCGGAGAATCTGCACTTAGAAACCCC
1 TCGGAGAATCAACACTTAGAAACCCC
50784326 T
1 T
50784327 TTTTGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.32, G:0.19, T:0.19
Consensus pattern (26 bp):
TCGGAGAATCAACACTTAGAAACCCC
Found at i:50787392 original size:15 final size:14
Alignment explanation
Indices: 50787372--50787401 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
50787362 TAAATAATTT
50787372 TAAAAATTTTAAAAA
1 TAAAAA-TTTAAAAA
50787387 TAAAAATTTAAAAA
1 TAAAAATTTAAAAA
50787401 T
1 T
50787402 CTGGTTTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
TAAAAATTTAAAAA
Found at i:50787621 original size:23 final size:23
Alignment explanation
Indices: 50787587--50787638 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
50787577 TAAAAATGAT
* *
50787587 AAAATT-TTAATTTAATGTTTTA
1 AAAATTATTAATTTAATATTATA
*
50787609 AAAATTATTAATTTACTATTATA
1 AAAATTATTAATTTAATATTATA
50787632 AAAATTA
1 AAAATTA
50787639 CAATTTATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 6 0.23
23 20 0.77
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
AAAATTATTAATTTAATATTATA
Found at i:50795962 original size:20 final size:20
Alignment explanation
Indices: 50795937--50795974 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
50795927 TTTCATGGGC
*
50795937 TTAGGCCGTAATGGGCCACG
1 TTAGGCCGAAATGGGCCACG
50795957 TTAGGCCGAAATGGGCCA
1 TTAGGCCGAAATGGGCCA
50795975 TGTGGGCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.34, T:0.18
Consensus pattern (20 bp):
TTAGGCCGAAATGGGCCACG
Found at i:50796257 original size:27 final size:27
Alignment explanation
Indices: 50796227--50796346 Score: 150
Period size: 27 Copynumber: 4.4 Consensus size: 27
50796217 AGACCCCAAA
* **
50796227 ATAGGGTAAAATGATCGAAATACCCTT
1 ATAGGGTAAAATGACCGAAATACCCCC
*
50796254 ATAGGGTAAAATGACCGAAATATCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * * *
50796281 ATAGGATAAAATAACCAAAAAACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
*
50796308 ATAGAGTAAAATGACCGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
*
50796335 ATAGAGTAAAAT
1 ATAGGGTAAAAT
50796347 CACTATTATG
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.47, C:0.20, G:0.15, T:0.18
Consensus pattern (27 bp):
ATAGGGTAAAATGACCGAAATACCCCC
Found at i:50798613 original size:24 final size:24
Alignment explanation
Indices: 50798565--50798611 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
50798555 ATTGGTCATA
*
50798565 GAGAGAATTGAGGAGGGATATTTG
1 GAGAGAATTGAGGAGGAATATTTG
*
50798589 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAG-GAATATT
50798612 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
GAGAGAATTGAGGAGGAATATTTG
Found at i:50799879 original size:27 final size:27
Alignment explanation
Indices: 50799720--50799866 Score: 224
Period size: 27 Copynumber: 5.4 Consensus size: 27
50799710 AGACCCCAAA
* *
50799720 ATAGGATAAAATGATCGAAATACCCCT
1 ATAGGGTAAAATGATCGAAATACCCCC
* *
50799747 ATAGTGTAAAAT-AGCCGAAATACCCCC
1 ATAGGGTAAAATGA-TCGAAATACCCCC
*
50799774 ATAGGATAAAATGATCGAAATACCCCC
1 ATAGGGTAAAATGATCGAAATACCCCC
50799801 ATAGGGTAAAATGATCGAAATACCCCC
1 ATAGGGTAAAATGATCGAAATACCCCC
*
50799828 ATAGGGTAAAATGACCGAAATACCCCC
1 ATAGGGTAAAATGATCGAAATACCCCC
50799855 ATAGGGTAAAAT
1 ATAGGGTAAAAT
50799867 CACTGTTATA
Statistics
Matches: 109, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
26 1 0.01
27 107 0.98
28 1 0.01
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (27 bp):
ATAGGGTAAAATGATCGAAATACCCCC
Found at i:50802505 original size:49 final size:50
Alignment explanation
Indices: 50802401--50802505 Score: 149
Period size: 49 Copynumber: 2.1 Consensus size: 50
50802391 TTATTGAGGT
* * * * *
50802401 TATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGTACTGA
1 TATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCACCGA
*
50802451 GATGAGAGGTCCC-CGTAAGACCATGTCTAGGACATGGCATGGGCACCGA
1 TATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCACCGA
50802500 TATGAG
1 TATGAG
50802506 GACTCTCATG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
49 36 0.75
50 12 0.25
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (50 bp):
TATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCACCGA
Found at i:50804612 original size:17 final size:17
Alignment explanation
Indices: 50804556--50804613 Score: 73
Period size: 17 Copynumber: 3.5 Consensus size: 17
50804546 GATCATTTTT
* *
50804556 AATTTTTTTATGAAGTC
1 AATTTTTTTGTGAGGTC
*
50804573 AATTTTTTTGTGAGATC
1 AATTTTTTTGTGAGGTC
*
50804590 AATTTTTTTGTGGGGTC
1 AATTTTTTTGTGAGGTC
50804607 -ATTTTTT
1 AATTTTTT
50804614 AGTTTTTCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
16 7 0.19
17 29 0.81
ACGTcount: A:0.21, C:0.05, G:0.17, T:0.57
Consensus pattern (17 bp):
AATTTTTTTGTGAGGTC
Found at i:50806023 original size:28 final size:28
Alignment explanation
Indices: 50805992--50806055 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
50805982 TTAGAGATTA
* * * *
50805992 CCATAGAGTCTATTTTTTTCGTACTTCG
1 CCATAAAGGCTATTCTTTTCATACTTCG
*
50806020 CCATAAAGGCTATTCTTTTCATACTTCA
1 CCATAAAGGCTATTCTTTTCATACTTCG
*
50806048 CCACAAAG
1 CCATAAAG
50806056 ACTTCCAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.38
Consensus pattern (28 bp):
CCATAAAGGCTATTCTTTTCATACTTCG
Found at i:50810642 original size:109 final size:109
Alignment explanation
Indices: 50810451--50810669 Score: 420
Period size: 109 Copynumber: 2.0 Consensus size: 109
50810441 GTTGTGAAAA
50810451 TTGTACACTTTATAACTTATTCATGGAATTTACTCATATTCACTTCCATTCGGTATATTCACTCA
1 TTGTACACTTTATAACTTATTCATGGAATTTACTCATATTCACTTCCATTCGGTATATTCACTCA
*
50810516 TTACTTTAATGTCACTTCGTATGTTTTCACTTTACTAGTTTAAT
66 TTACTTTAATGTCACTTCGTATGTTTTCACTTTACTAGTTGAAT
*
50810560 TTGTACACTTTATAACTTATTCATGGAATTTACTCATATTCACTTCCATTCGTTATATTCACTCA
1 TTGTACACTTTATAACTTATTCATGGAATTTACTCATATTCACTTCCATTCGGTATATTCACTCA
50810625 TTACTTTAATGTCACTTCGTATGTTTTCACTTTACTAGTTGAAT
66 TTACTTTAATGTCACTTCGTATGTTTTCACTTTACTAGTTGAAT
50810669 T
1 T
50810670 ACTTATTTGT
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
109 108 1.00
ACGTcount: A:0.26, C:0.19, G:0.08, T:0.47
Consensus pattern (109 bp):
TTGTACACTTTATAACTTATTCATGGAATTTACTCATATTCACTTCCATTCGGTATATTCACTCA
TTACTTTAATGTCACTTCGTATGTTTTCACTTTACTAGTTGAAT
Found at i:50812359 original size:26 final size:27
Alignment explanation
Indices: 50812285--50812385 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 27
50812275 TTTTATGGCA
* *
50812285 TAATATGAAAGAAAAGCCTTTGTGGCG
1 TAATACGAAAGAAAAGCCTTTGTGGTG
* * **
50812312 TAATACAAAATAAAATTCTTTGTGGTG
1 TAATACGAAAGAAAAGCCTTTGTGGTG
*
50812339 TAATACGAAA-AAAAGCCTTTGCGGTG
1 TAATACGAAAGAAAAGCCTTTGTGGTG
* * *
50812365 TAATATGAAAGGAATGCCTTT
1 TAATACGAAAGAAAAGCCTTT
50812386 ATGGAAAAAC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 22 0.37
27 38 0.63
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.30
Consensus pattern (27 bp):
TAATACGAAAGAAAAGCCTTTGTGGTG
Found at i:50839588 original size:33 final size:33
Alignment explanation
Indices: 50839549--50839676 Score: 139
Period size: 33 Copynumber: 3.6 Consensus size: 33
50839539 ATGATACGGT
*
50839549 GGAATCAGCACTTAGCAACCACCAATGAATTGG
1 GGAATCAGCACTTAGCAACCACCAATGAATCGG
* * *
50839582 AGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGG
1 GGAATCAGCACTTAGCAA-CCAC--CA-A--T-GAAT-CGG
50839623 TGGAATCAGCACTTAGCAACCACCAATGAATCGG
1 -GGAATCAGCACTTAGCAACCACCAATGAATCGG
50839657 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
50839677 CCTTTTATAT
Statistics
Matches: 79, Mismatches: 7, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
33 37 0.47
34 6 0.08
35 3 0.04
36 3 0.04
37 1 0.01
38 1 0.01
39 3 0.04
40 3 0.04
41 5 0.06
42 17 0.22
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.19
Consensus pattern (33 bp):
GGAATCAGCACTTAGCAACCACCAATGAATCGG
Found at i:50839646 original size:75 final size:76
Alignment explanation
Indices: 50839469--50839678 Score: 307
Period size: 75 Copynumber: 2.8 Consensus size: 76
50839459 TATCCGTTAT
* * * * * *
50839469 CGGTGGATTTAGCACTTAGCAACCACTAGTG-ATTCGGGGAATCAACACTTAGCAACCCCTTTCA
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATT-GGGGAATCAGCACTTAGCAACCCCCTTCA
*
50839533 CATTCAATGATA
65 CATTCAATAATA
*
50839545 CGGTGGAATCAGCACTTAGCAACCACCAATGAATTGGAGAATCAGCACTTAGCAACCCCCTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATTGGGGAATCAGCACTTAGCAACCCCCTTCAC
*
50839610 ATTTAA-AATA
66 ATTCAATAATA
*
50839620 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATTGGGGAATCAGCACTTAGCAACCCC
50839679 TTTTATATTC
Statistics
Matches: 122, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
75 60 0.49
76 59 0.48
77 3 0.02
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (76 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAATTGGGGAATCAGCACTTAGCAACCCCCTTCAC
ATTCAATAATA
Found at i:50839782 original size:51 final size:51
Alignment explanation
Indices: 50839696--50839896 Score: 230
Period size: 51 Copynumber: 4.0 Consensus size: 51
50839686 TTCAAAGATA
* * *
50839696 CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCACTAT
* * *
50839747 CCGATACACGTAGTAGCCTGCTCATAGTACTACACACGTGATCGA--AGCTAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTAT
* * * * * *
50839798 CCGGTACGCATAGTAGACTGCACATAGTACTACACATGCGGCCTATCA-T-T
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTAT
*
50839848 CTGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
50839897 TTCAGTTTTA
Statistics
Matches: 122, Mismatches: 22, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
49 4 0.03
50 40 0.33
51 75 0.61
52 2 0.02
53 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (51 bp):
CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCACTAT
Found at i:50839886 original size:101 final size:102
Alignment explanation
Indices: 50839704--50839888 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
50839694 TACCGGTTCA
* * *
50839704 CATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTGCT
1 CATAGTAGACTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTGCA
50839769 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
66 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
* * *
50839806 CATAGTAGACTGCACATAGTACTACACATGCGGCCTATCA-T-TCTGGTACACGTAGTAGCCTGC
1 CATAGTAGACTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAGTAGCCTGC
50839869 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
50839889 CCATCACTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
101 39 0.51
102 33 0.43
103 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (102 bp):
CATAGTAGACTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
Found at i:50849950 original size:28 final size:28
Alignment explanation
Indices: 50849919--50849972 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
50849909 TAGTAGCCTT
*
50849919 CACATAGTACTACACACGTGATCAAATA
1 CACATAGTACTACACACGTGACCAAATA
50849947 CACATAGTACTACACACGTGACCAAA
1 CACATAGTACTACACACGTGACCAAA
50849973 GCCTTCCGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.43, C:0.28, G:0.11, T:0.19
Consensus pattern (28 bp):
CACATAGTACTACACACGTGACCAAATA
Found at i:50850003 original size:51 final size:51
Alignment explanation
Indices: 50849947--50850063 Score: 148
Period size: 51 Copynumber: 2.3 Consensus size: 51
50849937 TGATCAAATA
*
50849947 CACATAGTACTACACACGTGACCA-AAGCCT-TCCGGTACACATAGTAGCCTG
1 CACATAGTACTACACACGTGACCATAA-CCTAT-CGATACACATAGTAGCCTG
* * * *
50849998 CACATAGTACTACACATGTGACCATTATCTATCGATACACGTAGTAGCCTG
1 CACATAGTACTACACACGTGACCATAACCTATCGATACACATAGTAGCCTG
*
50850049 CACTTAGTACTACAC
1 CACATAGTACTACAC
50850064 GTGTTTATAG
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
51 56 0.97
52 2 0.03
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (51 bp):
CACATAGTACTACACACGTGACCATAACCTATCGATACACATAGTAGCCTG
Found at i:50854317 original size:25 final size:25
Alignment explanation
Indices: 50854288--50854341 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
50854278 GTAAGTGTAC
*
50854288 ACAACCGTTATCAAGTAATAAAGTG
1 ACAACCATTATCAAGTAATAAAGTG
50854313 ACAACCATTATCAAGTAATAAAGTG
1 ACAACCATTATCAAGTAATAAAGTG
50854338 ACAA
1 ACAA
50854342 GTAATAAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.48, C:0.17, G:0.13, T:0.22
Consensus pattern (25 bp):
ACAACCATTATCAAGTAATAAAGTG
Found at i:50854344 original size:15 final size:15
Alignment explanation
Indices: 50854324--50854356 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
50854314 CAACCATTAT
50854324 CAAGTAATAAAGTGA
1 CAAGTAATAAAGTGA
50854339 CAAGTAATAAAGTGA
1 CAAGTAATAAAGTGA
50854354 CAA
1 CAA
50854357 CCGTTATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.55, C:0.09, G:0.18, T:0.18
Consensus pattern (15 bp):
CAAGTAATAAAGTGA
Found at i:50854354 original size:40 final size:40
Alignment explanation
Indices: 50854299--50854385 Score: 165
Period size: 40 Copynumber: 2.2 Consensus size: 40
50854289 CAACCGTTAT
50854299 CAAGTAATAAAGTGACAACCATTATCAAGTAATAAAGTGA
1 CAAGTAATAAAGTGACAACCATTATCAAGTAATAAAGTGA
*
50854339 CAAGTAATAAAGTGACAACCGTTATCAAGTAATAAAGTGA
1 CAAGTAATAAAGTGACAACCATTATCAAGTAATAAAGTGA
50854379 CAAGTAA
1 CAAGTAA
50854386 ATGACAAGTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.22
Consensus pattern (40 bp):
CAAGTAATAAAGTGACAACCATTATCAAGTAATAAAGTGA
Found at i:50855827 original size:83 final size:83
Alignment explanation
Indices: 50855672--50855829 Score: 237
Period size: 83 Copynumber: 1.9 Consensus size: 83
50855662 ATTGGGCCAA
* * * *
50855672 CTTGTTGGATGGTTTTGGGCTGCCAGTTTTCTTGTTAGATCAGTCTTTAATGCTTAGCACACTGG
1 CTTGTTGGATGGTTTTGGGCTGCCAATTTGCTTATTAGATCAGTCTTCAATGCTTAGCACACTGG
*
50855737 GTCACTTTCTATTTCAGG
66 CTCACTTTCTATTTCAGG
* *
50855755 CTTGTTGGATGGTTTTGGGTTGCCAATTTGCTTATTGGATCAGTCTTCAATGCTTAGCACACTGT
1 CTTGTTGGATGGTTTTGGGCTGCCAATTTGCTTATTAGATCAGTCTTCAATGCTTAGCACACTG-
50855820 GCT-ACTTTCT
65 GCTCACTTTCT
50855830 CTTTTAAGCT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
83 65 0.97
84 2 0.03
ACGTcount: A:0.16, C:0.18, G:0.23, T:0.42
Consensus pattern (83 bp):
CTTGTTGGATGGTTTTGGGCTGCCAATTTGCTTATTAGATCAGTCTTCAATGCTTAGCACACTGG
CTCACTTTCTATTTCAGG
Found at i:50869792 original size:62 final size:62
Alignment explanation
Indices: 50869691--50869814 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
50869681 GATAAAGTTG
*
50869691 AGGAAAATAGATAACATACTTATGATTTGTAGATTACAAGTAAGGTAATGCAAACAAAACAT
1 AGGAAAATAGATAACATACTTATGATTTGTAGATGACAAGTAAGGTAATGCAAACAAAACAT
50869753 AGGAAAATAGATAACATACTTATGATTTGTAGATGACAAGTAAGGTAATGCAAACAAAACAT
1 AGGAAAATAGATAACATACTTATGATTTGTAGATGACAAGTAAGGTAATGCAAACAAAACAT
50869815 GGCCCGTCAA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.48, C:0.10, G:0.17, T:0.25
Consensus pattern (62 bp):
AGGAAAATAGATAACATACTTATGATTTGTAGATGACAAGTAAGGTAATGCAAACAAAACAT
Found at i:50884214 original size:9 final size:9
Alignment explanation
Indices: 50884200--50884224 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
50884190 ACCTTAGCTG
50884200 CAAGATTTC
1 CAAGATTTC
50884209 CAAGATTTC
1 CAAGATTTC
50884218 CAAGATT
1 CAAGATT
50884225 CGGTTTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (9 bp):
CAAGATTTC
Found at i:50890577 original size:4 final size:4
Alignment explanation
Indices: 50890564--50890592 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
50890554 TACATGTCGA
50890564 AAAT -AAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
50890593 TTCATGAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:50893086 original size:183 final size:183
Alignment explanation
Indices: 50892778--50893144 Score: 734
Period size: 183 Copynumber: 2.0 Consensus size: 183
50892768 GAAATAGAAA
50892778 AGTTTATTATGATGAATTATCATGATTTACCGATTGATTGGATGCATGTGTTAGACTAACGATAA
1 AGTTTATTATGATGAATTATCATGATTTACCGATTGATTGGATGCATGTGTTAGACTAACGATAA
50892843 GAATTTTATAGATTGCATGTTTAATTTGTCTATTAGGATTTATTTGCAAAAGTTGCAAAATATGT
66 GAATTTTATAGATTGCATGTTTAATTTGTCTATTAGGATTTATTTGCAAAAGTTGCAAAATATGT
50892908 GTTCTAGTTCATAAAGTACTTAACTGAAATGAGAGTTTAAAGTAGAGGTCCTT
131 GTTCTAGTTCATAAAGTACTTAACTGAAATGAGAGTTTAAAGTAGAGGTCCTT
50892961 AGTTTATTATGATGAATTATCATGATTTACCGATTGATTGGATGCATGTGTTAGACTAACGATAA
1 AGTTTATTATGATGAATTATCATGATTTACCGATTGATTGGATGCATGTGTTAGACTAACGATAA
50893026 GAATTTTATAGATTGCATGTTTAATTTGTCTATTAGGATTTATTTGCAAAAGTTGCAAAATATGT
66 GAATTTTATAGATTGCATGTTTAATTTGTCTATTAGGATTTATTTGCAAAAGTTGCAAAATATGT
50893091 GTTCTAGTTCATAAAGTACTTAACTGAAATGAGAGTTTAAAGTAGAGGTCCTT
131 GTTCTAGTTCATAAAGTACTTAACTGAAATGAGAGTTTAAAGTAGAGGTCCTT
50893144 A
1 A
50893145 AATAGAAATT
Statistics
Matches: 184, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
183 184 1.00
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (183 bp):
AGTTTATTATGATGAATTATCATGATTTACCGATTGATTGGATGCATGTGTTAGACTAACGATAA
GAATTTTATAGATTGCATGTTTAATTTGTCTATTAGGATTTATTTGCAAAAGTTGCAAAATATGT
GTTCTAGTTCATAAAGTACTTAACTGAAATGAGAGTTTAAAGTAGAGGTCCTT
Found at i:50894357 original size:44 final size:44
Alignment explanation
Indices: 50894309--50894401 Score: 177
Period size: 44 Copynumber: 2.1 Consensus size: 44
50894299 ATCTCAAGGT
*
50894309 CCATGTTTATAACATGGCAATTAAGGAAGAATTGACGGAAAAGA
1 CCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAAGA
50894353 CCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAAGA
1 CCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAAGA
50894397 CCATG
1 CCATG
50894402 GTTGGACCAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.23
Consensus pattern (44 bp):
CCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAAGA
Found at i:50894413 original size:44 final size:44
Alignment explanation
Indices: 50894309--50894415 Score: 151
Period size: 44 Copynumber: 2.4 Consensus size: 44
50894299 ATCTCAAGGT
* * *
50894309 CCATGTTTATAACATGGCAATTAAGGAAGAATTGACGGAAAAGA
1 CCATGGTTAGAACATGGCAATTAAGAAAGAATTGACGGAAAAGA
* *
50894353 CCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAAGA
1 CCATGGTTAGAACATGGCAATTAAGAAAGAATTGACGGAAAAGA
* *
50894397 CCATGGTTGGACCATGGCA
1 CCATGGTTAGAACATGGCA
50894416 GTAAGTGTGC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (44 bp):
CCATGGTTAGAACATGGCAATTAAGAAAGAATTGACGGAAAAGA
Found at i:50894481 original size:50 final size:50
Alignment explanation
Indices: 50894422--50894658 Score: 293
Period size: 50 Copynumber: 4.8 Consensus size: 50
50894412 GGCAGTAAGT
50894422 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATC-GAGGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA-CAGAGGA
* * *
50894472 GTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTACAGACTGAGGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGA
* * ** *
50894522 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATGGACAGAGAA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGA
* ** * * *
50894572 GAGTTAGTGTAAGACCATGTCTGGGATATGGCATTGGCTC-G--AGAGGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGA
* *
50894619 GTGCCAGTGTAAGACCATGTTTAGGACATGGCATCGGCAC
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
50894659 CGATATGTGA
Statistics
Matches: 160, Mismatches: 26, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
47 37 0.23
49 2 0.01
50 121 0.76
ACGTcount: A:0.27, C:0.19, G:0.33, T:0.21
Consensus pattern (50 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGA
Found at i:50897330 original size:32 final size:32
Alignment explanation
Indices: 50897294--50897357 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
50897284 TTATTGTGGT
50897294 ATGATATATAAAATATATATTATCTAACCACA
1 ATGATATATAAAATATATATTATCTAACCACA
50897326 ATGATATATAAAATATATATTATCTAACCACA
1 ATGATATATAAAATATATATTATCTAACCACA
50897358 TTATAATATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.50, C:0.12, G:0.03, T:0.34
Consensus pattern (32 bp):
ATGATATATAAAATATATATTATCTAACCACA
Found at i:50904516 original size:32 final size:35
Alignment explanation
Indices: 50904475--50904541 Score: 86
Period size: 33 Copynumber: 2.0 Consensus size: 35
50904465 TATATTTTAA
*
50904475 TTATATTTAATAATT-CAAATAAAAA-ATATTATT
1 TTATATTTAATAATTGCAAATAAAAATATAATATT
* *
50904508 TTAT-TTTAATTATTGCAATTAAAAATATAATATT
1 TTATATTTAATAATTGCAAATAAAAATATAATATT
50904542 AAAAAAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
32 9 0.31
33 13 0.45
34 7 0.24
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (35 bp):
TTATATTTAATAATTGCAAATAAAAATATAATATT
Found at i:50904886 original size:18 final size:18
Alignment explanation
Indices: 50904859--50904893 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50904849 TACCAAGCGA
50904859 CTTAGAGTGACAATCATG
1 CTTAGAGTGACAATCATG
* *
50904877 CTTAGTGTGACGATCAT
1 CTTAGAGTGACAATCAT
50904894 ATTTCTGCTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (18 bp):
CTTAGAGTGACAATCATG
Found at i:50908368 original size:50 final size:50
Alignment explanation
Indices: 50908214--50908391 Score: 193
Period size: 50 Copynumber: 3.6 Consensus size: 50
50908204 GTTCACTTAT
* * *
50908214 TAGCCTGCACATAGTACTACACATGTGACCATTTTCA-TCCGATACACGTAG
1 TAGCCTGCACATAGTACTACACACGTGACC--TATCATTCCGGTACACGTAG
** * * *
50908265 TAGCCTGCAC--AGTACTACACACGTGATCGAAGC-TATCCGGTACGCATAG
1 TAGCCTGCACATAGTACTACACACGTGA-CCTATCAT-TCCGGTACACGTAG
* * *
50908314 TAGCCTGCACGTAGTACTACACATGTGACCTATCATTCTGGTACACGTAG
1 TAGCCTGCACATAGTACTACACACGTGACCTATCATTCCGGTACACGTAG
50908364 TAGCCTGCACATAGTACTACACACGTGA
1 TAGCCTGCACATAGTACTACACACGTGA
50908392 TCTAGCAACT
Statistics
Matches: 104, Mismatches: 17, Indels: 13
0.78 0.13 0.10
Matches are distributed among these distances:
48 1 0.01
49 36 0.35
50 41 0.39
51 26 0.25
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (50 bp):
TAGCCTGCACATAGTACTACACACGTGACCTATCATTCCGGTACACGTAG
Found at i:50912680 original size:12 final size:13
Alignment explanation
Indices: 50912663--50912692 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
50912653 CTCATACATG
50912663 AATAAATAAA-GC
1 AATAAATAAATGC
50912675 AATAAATAAATGC
1 AATAAATAAATGC
50912688 AATAA
1 AATAA
50912693 TTATAGCCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.20
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:50916737 original size:25 final size:25
Alignment explanation
Indices: 50916708--50916762 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
50916698 GTGTAGTGGC
50916708 AAGGTGGCGACACAGGTGTGGCAAG
1 AAGGTGGCGACACAGGTGTGGCAAG
* * * * *
50916733 GAGGTGGTGTCACATGTGTGGTAAG
1 AAGGTGGCGACACAGGTGTGGCAAG
50916758 AAGGT
1 AAGGT
50916763 CAGAGGTTTA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.25, C:0.11, G:0.44, T:0.20
Consensus pattern (25 bp):
AAGGTGGCGACACAGGTGTGGCAAG
Found at i:50918286 original size:27 final size:27
Alignment explanation
Indices: 50918255--50918341 Score: 124
Period size: 27 Copynumber: 3.2 Consensus size: 27
50918245 AAAGGTTGTT
50918255 AAATTATTGAAATACCCCTGAAGGGTA
1 AAATTATTGAAATACCCCTGAAGGGTA
*
50918282 AAATTATCGAAATA-CCCTCGAAGGGTA
1 AAATTATTGAAATACCCCT-GAAGGGTA
*
50918309 AAATT-TCTGTAATACCCCTGAAGGGTA
1 AAATTAT-TGAAATACCCCTGAAGGGTA
50918336 AAATTA
1 AAATTA
50918342 GGAGATGAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
26 5 0.09
27 44 0.83
28 4 0.08
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.26
Consensus pattern (27 bp):
AAATTATTGAAATACCCCTGAAGGGTA
Found at i:50934375 original size:39 final size:39
Alignment explanation
Indices: 50934211--50934393 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
50934201 TTGAATGCTG
* * * * * * *
50934211 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * * *
50934251 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
50934291 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
50934331 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
50934370 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
50934394 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:50934413 original size:79 final size:80
Alignment explanation
Indices: 50934247--50934428 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 80
50934237 GCTAAGTGAA
* * * *
50934247 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGGGTTAAG-TCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** ** *
50934311 CATTCGTGCGAGTTGT
65 CATTCGAACGAGGAGC
* * * * *
50934327 TAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
*
50934391 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
*
50934406 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
50934429 TACGTGATTT
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
78 14 0.17
79 50 0.60
80 19 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:50942795 original size:21 final size:21
Alignment explanation
Indices: 50942771--50942878 Score: 71
Period size: 21 Copynumber: 5.1 Consensus size: 21
50942761 CTTTTAAGCT
*
50942771 TTTGTTAAACTCTTATGAGCA
1 TTTGTTAAGCTCTTATGAGCA
* *
50942792 TTTGATAAGCT-TTTTCGAGCA
1 TTTGTTAAGCTCTTAT-GAGCA
* *
50942813 TCTGTTCAGCTCTTATGAGC-
1 TTTGTTAAGCTCTTATGAGCA
* *
50942833 TTATATTCAGCTCTT-TCGAGC-
1 TT-TGTTAAGCTCTTAT-GAGCA
* *
50942854 TTCTGTTCAGATCTTATGAGCA
1 TT-TGTTAAGCTCTTATGAGCA
50942876 TTT
1 TTT
50942879 TTTCACGATT
Statistics
Matches: 69, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
20 5 0.07
21 58 0.84
22 6 0.09
ACGTcount: A:0.21, C:0.19, G:0.17, T:0.44
Consensus pattern (21 bp):
TTTGTTAAGCTCTTATGAGCA
Found at i:50942827 original size:42 final size:42
Alignment explanation
Indices: 50942780--50942878 Score: 130
Period size: 42 Copynumber: 2.4 Consensus size: 42
50942770 TTTTGTTAAA
*
50942780 CTCTTATGAGCATTTGA-TAAGCTTTTTCGAGCATCTGTTCAG
1 CTCTTATGAGCATTT-ATTAAGCTCTTTCGAGCATCTGTTCAG
* *
50942822 CTCTTATGAGC-TTATATTCAGCTCTTTCGAGCTTCTGTTCAG
1 CTCTTATGAGCATT-TATTAAGCTCTTTCGAGCATCTGTTCAG
*
50942864 ATCTTATGAGCATTT
1 CTCTTATGAGCATTT
50942879 TTTCACGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
41 3 0.06
42 45 0.90
43 2 0.04
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.42
Consensus pattern (42 bp):
CTCTTATGAGCATTTATTAAGCTCTTTCGAGCATCTGTTCAG
Found at i:50942883 original size:21 final size:21
Alignment explanation
Indices: 50942815--50942874 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
50942805 TTCGAGCATC
50942815 TGTTCAGCTCTTATGAGCTTA
1 TGTTCAGCTCTTATGAGCTTA
* *
50942836 TATTCAGCTCTT-TCGAGCTTC
1 TGTTCAGCTCTTAT-GAGCTTA
*
50942857 TGTTCAGATCTTATGAGC
1 TGTTCAGCTCTTATGAGC
50942875 ATTTTTTCAC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.03
21 31 0.94
22 1 0.03
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (21 bp):
TGTTCAGCTCTTATGAGCTTA
Found at i:50945988 original size:27 final size:27
Alignment explanation
Indices: 50945950--50946002 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
50945940 GCACTGAGAC
* *
50945950 CCCCGTAGGGTAAAATGACCAAAATAT
1 CCCCGAAGGGTAAAATAACCAAAATAT
*
50945977 CCCCGAAGGGTAAAATAACCGAAATA
1 CCCCGAAGGGTAAAATAACCAAAATA
50946003 CTCTCGATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.43, C:0.23, G:0.19, T:0.15
Consensus pattern (27 bp):
CCCCGAAGGGTAAAATAACCAAAATAT
Found at i:50962244 original size:66 final size:65
Alignment explanation
Indices: 50962116--50962252 Score: 220
Period size: 65 Copynumber: 2.1 Consensus size: 65
50962106 TAATAAAATA
* *
50962116 TAAAATTATATTTAATAATTCATTTTAAAATATTTCATTAATAATTTGGGTTTTAATTAATTAAT
1 TAAATTTATATTTAATAATTAATTTTAAAATATTTCATTAATAATTTGGGTTTTAATTAATTAAT
* * *
50962181 TAAATTTATATTTAATTATTAATTTTTAAATATTTCATTAATAAATTTGGGTTTTATTTAATTAA
1 TAAATTTATATTTAATAATTAATTTTAAAATATTTCATTAAT-AATTTGGGTTTTAATTAATTAA
50962246 T
65 T
50962247 TAAATT
1 TAAATT
50962253 GGATAAATTT
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
65 38 0.58
66 28 0.42
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (65 bp):
TAAATTTATATTTAATAATTAATTTTAAAATATTTCATTAATAATTTGGGTTTTAATTAATTAAT
Found at i:50962266 original size:66 final size:64
Alignment explanation
Indices: 50962137--50962266 Score: 181
Period size: 66 Copynumber: 2.0 Consensus size: 64
50962127 TTAATAATTC
* *
50962137 ATTTTAAAATATTTCATTAATAATTTGGGTTTTAATTAATTAATTAAATTTATATTTAATTATTA
1 ATTTTAAAATATTTCATTAATAATTTGGGTTTTAATTAATTAATTAAATTGATAATT-ATTATTA
* *
50962202 ATTTTTAAATATTTCATTAATAAATTTGGGTTTTATTTAATTAATTAAATTGGATAAATT-TTAT
1 ATTTTAAAATATTTCATTAAT-AATTTGGGTTTTAATTAATTAATTAAATT-GAT-AATTATTAT
50962266 T
63 T
50962267 CTTTGGTCCT
Statistics
Matches: 58, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
65 20 0.34
66 33 0.57
67 2 0.03
68 3 0.05
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (64 bp):
ATTTTAAAATATTTCATTAATAATTTGGGTTTTAATTAATTAATTAAATTGATAATTATTATTA
Found at i:50964448 original size:79 final size:82
Alignment explanation
Indices: 50964307--50964496 Score: 221
Period size: 79 Copynumber: 2.4 Consensus size: 82
50964297 GTTATTTGAA
* **
50964307 TAATGTCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATCTCCGGACTAAGATCCGAAG
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAG
*
50964371 GCATTTGTGCGAGATAC
66 GCAATTGTGCGAGATAC
* * * **
50964388 TAAT-TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAA
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAA
*
50964449 GGCAATTGTGCGAGTTAC
65 GGCAATTGTGCGAGATAC
* *
50964467 T-ATAACCGGGCTATGTCCCGAAGGCATTTG
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTG
50964497 AACGAGTAGC
Statistics
Matches: 94, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 55 0.59
80 32 0.34
81 4 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (82 bp):
TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAG
GCAATTGTGCGAGATAC
Found at i:50964510 original size:40 final size:40
Alignment explanation
Indices: 50964313--50964496 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
50964303 TGAATAATGT
* * * **
50964313 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATCT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
50964353 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
50964393 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
50964431 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
50964472 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
50964497 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:50964518 original size:79 final size:79
Alignment explanation
Indices: 50964365--50964529 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
50964355 GGACTAAGAT
* * **
50964365 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
50964430 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
50964444 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
50964507 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
50964523 CCGAAGG
1 CCGAAGG
50964530 TACGTGAATT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:50984966 original size:150 final size:151
Alignment explanation
Indices: 50984679--50985073 Score: 562
Period size: 150 Copynumber: 2.6 Consensus size: 151
50984669 AAAGCTCTCT
*
50984679 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * * *
50984744 CTGTACTTAGTACTACACACATGACTTATCCATCTGATACACGTAGTAGCTTGCACATAGGACTA
66 CTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAATAGCCTACACATAGGACTA
* * *
50984809 CAGACATGGTCG-AAGT-TTACG
131 CACACATGATCGAAACTATT--G
* * * *
50984830 GGTATGCATAGTAG-CTGCACTTAGTACTACACATGCGACCGATCAATCGGGTACACGTACTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
50984894 CTACACTTAGTACTACACACATGACCTAACCATCTGATACATGTAATAGCCTACACTTAGTACTA
66 CTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAATAGCCTACACATAGGACTA
50984959 CACACATGATCGAAACTATTG
131 CACACATGATCGAAACTATTG
* *
50984980 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACGATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
50985045 CTGCACTTAGTACTACACACGTGACCTAA
66 CTGCACTTAGTACTACACACATGACCTAA
50985074 AAATGCCTTA
Statistics
Matches: 215, Mismatches: 26, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
150 125 0.58
151 88 0.41
152 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAATAGCCTACACATAGGACTA
CACACATGATCGAAACTATTG
Found at i:50985071 original size:50 final size:50
Alignment explanation
Indices: 50984676--50985073 Score: 332
Period size: 50 Copynumber: 7.9 Consensus size: 50
50984666 ACCAAAGCTC
* * * * *
50984676 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACAA
* * * *
50984726 TCTGGTACACGTAGTAGCCTGTACTTAGTACTACACACATGACTTATCCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACAA
* * * * * ** * ***
50984776 TCTGATACACGTAGTAGCTTGCACATAGGACTACAGACATGGTCGAAGTT
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACAA
* ** * *** * *
50984826 TACGGGTATGCATAGTAG-CTGCACTTAGTACTACACATGCGACCGATCAA
1 T-CTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACAA
* * * *
50984876 TCGGGTACACGTACTAGCCTACACTTAGTACTACACACATGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACAA
* * * * ** *
50984926 TCTGATACATGTAATAGCCTACACTTAGTACTACACACATGATCGAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGA-CCTAACAA
* * *** *
50984977 T-TGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACGA
1 TCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACAA
*
50985027 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAA
50985074 AAATGCCTTA
Statistics
Matches: 270, Mismatches: 73, Indels: 10
0.76 0.21 0.03
Matches are distributed among these distances:
49 12 0.04
50 210 0.78
51 48 0.18
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACAA
Found at i:50985793 original size:30 final size:30
Alignment explanation
Indices: 50985736--50985794 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
50985726 CAAAAATCAT
* *
50985736 ACTTTTACAAATTTACATTTTGACCCCTAA
1 ACTTTCACAAATTTACACTTTGACCCCTAA
* * *
50985766 ACTTTCACATATTTGCACTTTGGCCCCTA
1 ACTTTCACAAATTTACACTTTGACCCCTA
50985795 GGTTTGTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.39
Consensus pattern (30 bp):
ACTTTCACAAATTTACACTTTGACCCCTAA
Found at i:50988106 original size:15 final size:14
Alignment explanation
Indices: 50988086--50988131 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 14
50988076 ATACCAGGAT
*
50988086 TAAGAAGTCCAAGA
1 TAAGAAATCCAAGA
50988100 TAGAGAAATCCAAGA
1 TA-AGAAATCCAAGA
50988115 TAAGGAAATCCAAGA
1 TAA-GAAATCCAAGA
50988130 TA
1 TA
50988132 CAATATCATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 3 0.10
15 26 0.90
ACGTcount: A:0.52, C:0.13, G:0.20, T:0.15
Consensus pattern (14 bp):
TAAGAAATCCAAGA
Found at i:50991699 original size:50 final size:50
Alignment explanation
Indices: 50991601--50992030 Score: 371
Period size: 50 Copynumber: 8.5 Consensus size: 50
50991591 TTGGTACGCA
* * * *
50991601 TAGTAGCCTACTCTTAGTACTACACATGCGACCTATCAATCT-AGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGA-TACACG
* * * *
50991651 TAGTAGCCTACACTTAGTACTACATACGTGACTTATCCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
* ** * * * * *
50991701 TAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGATACACG
* * * *
50991752 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
* * * * *
50991802 TAGGAGCCTACACTTAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
* ** * * * * *
50991852 TAGTAGTCTGCACTTAGTACTACACACGTGATCGAAACTATCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTATCAATCTGATACACG
* * * * * *
50991903 TAGTAGCCTGCACTTAGTACTACACATGCGACCGAACAATCTGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
* * * * *
50991953 TAGTAGCCTGCACTTAGTACTACACACATGACCTA-AAACTGTCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA---TCTGATACACG
*
50992005 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
50992031 TGTGTTCTCA
Statistics
Matches: 309, Mismatches: 63, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
49 5 0.02
50 191 0.62
51 78 0.25
52 35 0.11
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
Found at i:50991775 original size:101 final size:99
Alignment explanation
Indices: 50991601--50991987 Score: 369
Period size: 101 Copynumber: 3.8 Consensus size: 99
50991591 TTGGTACGCA
* * * * * * * * *
50991601 TAGTAGCCTACTCTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAACAA-CTGGTACACATAGTAGCCTGCACTT
* * * *
50991666 AGTACTACATACGTGACTTATCCATCTGATACACG
65 AGTACTACACACGTGACCTATCAATCCGATACACG
* * * * *
50991701 TAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTAACGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAA--CAACTGGTACACATAGTAGCCTGCACT
* * *
50991766 TAGTACTACACATGCGACCTATCAATCCGATACATG
64 TAGTACTACACACGTGACCTATCAATCCGATACACG
* * * * * * * *
50991802 TAGGAGCCTACACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGTCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAA-CAACTGGTACACATAGTAGCCTGCACTT
** * * * * *
50991867 AGTACTACACACGTGATCGAAACTATCGGGTACACA
65 AGTACTACACACGTGA-CCTATCAATCCGATACACG
* *
50991903 TAGTAGCCTGCACTTAGTACTACACATGCGACCGAACAATCTGGTACACATAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAACAA-CTGGTACACATAGTAGCCTGCACTT
*
50991968 AGTACTACACACATGACCTA
65 AGTACTACACACGTGACCTA
50991988 AAACTGTCTT
Statistics
Matches: 225, Mismatches: 58, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
100 67 0.30
101 156 0.69
102 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCGAACAACTGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTATCAATCCGATACACG
Found at i:50991867 original size:151 final size:151
Alignment explanation
Indices: 50991593--50992030 Score: 599
Period size: 151 Copynumber: 2.9 Consensus size: 151
50991583 GAAGCTCTTT
* * *
50991593 GGTACGCATAGTAGCCTACTCTTAGTACTACACATGCGACCTATCAAT-CTAGTACACGTAGTAG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGA-TACACGTAGTAG
* * * * *
50991657 CCTACACTTAGTACTACATACGTGACTTATCCATCTGATACACGTAGTAACCTGCACTTAGTACT
65 CCTACACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACT
**
50991722 ACACACGTGATCGAAGTTAACG
130 ACACACGTGATCGAAACTAACG
* *
50991744 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACATGTAGGAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
*
50991809 CTACACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGTCTGCACTTAGTACTA
66 CTACACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
*
50991874 CACACGTGATCGAAACTATCG
131 CACACGTGATCGAAACTAACG
* * * * * *
50991895 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCGAACAATCTGGTACACATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
* ** * * * *
50991960 CTGCACTTAGTACTACACACATGACCTAAAACTGTCTTAAACACATAGTAGCCTGCACATAGTAC
66 CTACACTTAGTACTACACACATGACCT--AACCATCTGATACACGTAGTAGCCTGCACTTAGTAC
50992025 TACACA
129 TACACA
50992031 TGTGTTCTCA
Statistics
Matches: 254, Mismatches: 30, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
151 217 0.85
152 2 0.01
153 35 0.14
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
CTACACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
CACACGTGATCGAAACTAACG
Found at i:50992044 original size:102 final size:101
Alignment explanation
Indices: 50991599--50992032 Score: 309
Period size: 101 Copynumber: 4.3 Consensus size: 101
50991589 CTTTGGTACG
* * * * * * *
50991599 CATAGTAGCCTACTCTTAGTACTACACATGCGACCTATCAATCT-AGTACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCGAACAATCTGA-TACACATAGTAGCCTGCA
* * ** * * * *
50991663 CTTAGTACTACATACGTGA-CTTATCCATCTGATACA
65 CTTAGTACTACACACATGACCAAAACTATCGGAAACA
* * * * * * * * * *
50991699 CGTAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCATAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCGAA--CAATCTGATACACATAGTAGCCTGC
*** * * * * *
50991763 ACTTAGTACTACACATGCGACC-TATCAATCCGATACA
64 ACTTAGTACTACACACATGACCAAAACTATCGGAAACA
** * * * *** * * * *
50991800 TGTAGGAGCCTACACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGTCTGCAC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCGAACAATCTGATACACATAGTAGCCTGCAC
* * * **
50991865 TTAGTACTACACACGTGATCGAAACTATCGGGTACA
66 TTAGTACTACACACATGACCAAAACTATCGGAAACA
* *
50991901 CATAGTAGCCTGCACTTAGTACTACACATGCGACCGAACAATCTGGTACACATAGTAGCCTGCAC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCGAACAATCTGATACACATAGTAGCCTGCAC
* **
50991966 TTAGTACTACACACATGACCTAAAACTGTCTTAAACA
66 TTAGTACTACACACATGACC-AAAACTATCGGAAACA
50992003 CATAGTAGCCTGCACATAGTACTACACATG
1 CATAGTAGCCTGCACATAGTACTACACATG
50992033 TGTTCTCACA
Statistics
Matches: 264, Mismatches: 63, Indels: 12
0.78 0.19 0.04
Matches are distributed among these distances:
99 1 0.00
100 64 0.24
101 157 0.59
102 42 0.16
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCGAACAATCTGATACACATAGTAGCCTGCAC
TTAGTACTACACACATGACCAAAACTATCGGAAACA
Found at i:51012010 original size:85 final size:85
Alignment explanation
Indices: 51011854--51012016 Score: 193
Period size: 85 Copynumber: 1.9 Consensus size: 85
51011844 GTCTAAGACA
* * * ** * *
51011854 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACCATGTCTAGGA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGAATTACATATAAGACCACGTCCAGGA
51011919 CATCGGCATTGTATCTGATT
66 CATCGGCATTGTATCTGATT
* * * * *
51011939 TCGTGTAAGACCCTGTCTGGGATAGAGGCATCGATAT-AGAATTACATGTAAGACTACGTCCGGG
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGAT-TGAGAATTACATATAAGACCACGTCCAGG
*
51012003 ACGTCGGCATTGTA
65 ACATCGGCATTGTA
51012017 CTTGTTTATA
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
85 63 0.98
86 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGAATTACATATAAGACCACGTCCAGGA
CATCGGCATTGTATCTGATT
Found at i:51012987 original size:14 final size:14
Alignment explanation
Indices: 51012964--51012997 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
51012954 TTAATCATCA
51012964 AGCA-TTCATATTG
1 AGCACTTCATATTG
51012977 AGCACTTCATATTG
1 AGCACTTCATATTG
51012991 AGCACTT
1 AGCACTT
51012998 TATACCAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (14 bp):
AGCACTTCATATTG
Found at i:51013931 original size:18 final size:18
Alignment explanation
Indices: 51013908--51013943 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
51013898 TCCACCCCCG
*
51013908 GTTAATCCTTCTCAAACA
1 GTTAATACTTCTCAAACA
51013926 GTTAATACTTCTCAAACA
1 GTTAATACTTCTCAAACA
51013944 TTTGATATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (18 bp):
GTTAATACTTCTCAAACA
Found at i:51023978 original size:43 final size:42
Alignment explanation
Indices: 51023930--51024086 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 42
51023920 AGCTCGTACA
*
51023930 ATGCCAATGTTCTAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCTAGACGTGGTCTTACATGTAATCAAA-ATCG
* * * *
51023973 ATGCCATTATCCTAGACAG-GGTCTTACATGAAATCAAACA-CA
1 ATGCCAATGTCCTAGAC-GTGGTCTTACATGTAATCAAA-ATCG
** * *
51024015 ATGTTAATGTTCTAGACATGGTCTTACATGTAAATCACAAATCG
1 ATGCCAATGTCCTAGACGTGGTCTTACATGT-AATCA-AAATCG
*
51024059 ATGCCAATGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCTAGACGTGGTCTTACA
51024087 CAATATCACA
Statistics
Matches: 90, Mismatches: 19, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
42 24 0.27
43 39 0.43
44 27 0.30
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (42 bp):
ATGCCAATGTCCTAGACGTGGTCTTACATGTAATCAAAATCG
Found at i:51025537 original size:42 final size:43
Alignment explanation
Indices: 51025486--51025582 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 43
51025476 CTAAGACTAC
*
51025486 GTGTAAGACCATATCTAAGATATGACATTGATATGAGACTT-T
1 GTGTAAGACCATATCTAAGATATGACATCGATATGAGACTTCT
* ** *
51025528 GTGTTAGACCATATCTGGGATATGGCATCGATATGAGACTTCT
1 GTGTAAGACCATATCTAAGATATGACATCGATATGAGACTTCT
51025571 -TGTAAGACCATA
1 GTGTAAGACCATA
51025583 GCTGCGCTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
42 47 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATATCTAAGATATGACATCGATATGAGACTTCT
Found at i:51029083 original size:82 final size:81
Alignment explanation
Indices: 51028969--51029124 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
51028959 AAATTGTATA
* * * * *
51028969 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGGGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCAAGTCAACTATGTAGCACTAAGGGTGCGAAATGAATACG-TGGCACTAAGTG
51029033 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
51029050 GCACTAAGTGTGCAAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCAAGTC-AACTATGTAGCACTAAGGGTGCGAAATGAATACGTGGCACTAAGTG
*
51029115 TGCGAGTTGA
65 TGCGAATTGA
51029125 TTGTATAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 17 0.27
82 46 0.73
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCAAGTCAACTATGTAGCACTAAGGGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51029091 original size:55 final size:54
Alignment explanation
Indices: 51028967--51029119 Score: 168
Period size: 55 Copynumber: 2.8 Consensus size: 54
51028957 TTAAATTGTA
* *
51028967 TAGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGGGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCGAAATGAATATG
* * * *
51029021 -ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGC-AAGTCTAACTATG
1 TA-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAAAT-GAA-TATG
* * *
51029076 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 TAGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGA
51029120 GTTGATTGTA
Statistics
Matches: 82, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
53 4 0.05
54 34 0.41
55 42 0.51
56 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (54 bp):
TAGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAAATGAATATG
Found at i:51029126 original size:27 final size:27
Alignment explanation
Indices: 51028969--51029124 Score: 147
Period size: 27 Copynumber: 5.7 Consensus size: 27
51028959 AAATTGTATA
*
51028969 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* * *
51028996 GCACTAAGGGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
51029023 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
51029050 GCACTAAGTGTGC-AAGTCTAACTATGTA
1 GCACTAAGTGTGCGAA-T-TGACTATGTG
* * *
51029078 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
51029105 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
51029125 TTGTATAGCA
Statistics
Matches: 105, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
26 2 0.02
27 79 0.75
28 23 0.22
29 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:51029135 original size:27 final size:27
Alignment explanation
Indices: 51028961--51029145 Score: 94
Period size: 27 Copynumber: 6.8 Consensus size: 27
51028951 GCGGGATTAA
51028961 ATTGTATAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
* *
51028988 ACTATGT-T-GCACTAAGGGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
51029015 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** *
51029042 ACCATGCGGCACTAAGTGTGC-AAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAA-T-TG
* * * *
51029070 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
51029097 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
51029124 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
51029146 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 24, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
26 3 0.02
27 92 0.74
28 25 0.20
29 4 0.03
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:51029136 original size:82 final size:81
Alignment explanation
Indices: 51028961--51029144 Score: 190
Period size: 82 Copynumber: 2.3 Consensus size: 81
51028951 GCGGGATTAA
* * * * *
51028961 ATTGTATAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGGGTGCGAAATGAATATGATGCA
1 ATTGTATAGCACTAAGTGTGCAAGTCAACTATGTAGCACTAAGGGTGCGAAATGAATACGATGCA
51029026 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** *** * ** *
51029042 ACCATGCGGCACTAAGTGTGCAAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTATAGCACTAAGTGTGCAAGTC-AACTATGTAGCACTAAGGGTGCGAAATGAATACGAT-G
*
51029106 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
*
51029124 ATTGTATAGCACTGAGTGTGC
1 ATTGTATAGCACTAAGTGTGC
51029145 GGGCTCAATA
Statistics
Matches: 78, Mismatches: 23, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
81 19 0.24
82 59 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTATAGCACTAAGTGTGCAAGTCAACTATGTAGCACTAAGGGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:51029905 original size:116 final size:116
Alignment explanation
Indices: 51029701--51029928 Score: 438
Period size: 116 Copynumber: 2.0 Consensus size: 116
51029691 TTTGGTACTT
* *
51029701 TCTTCTTAGTGTGTTTAGAAGATCATTTTGGCATGTATAAGCTAGTACGTTGTGTTTGAATTATG
1 TCTTCTTAGTGTGCTTAGAAGATCATTTTGGCATGTATAAGCTAGTACGTTGTGTTAGAATTATG
51029766 GCATGTAAACTTTAAGCCATGCGAAAATGGCACGAATGTTCGATTGAATTC
66 GCATGTAAACTTTAAGCCATGCGAAAATGGCACGAATGTTCGATTGAATTC
51029817 TCTTCTTAGTGTGCTTAGAAGATCATTTTGGCATGTATAAGCTAGTACGTTGTGTTAGAATTATG
1 TCTTCTTAGTGTGCTTAGAAGATCATTTTGGCATGTATAAGCTAGTACGTTGTGTTAGAATTATG
51029882 GCATGTAAACTTTAAGCCATGCGAAAATGGCACGAATGTTCGATTGA
66 GCATGTAAACTTTAAGCCATGCGAAAATGGCACGAATGTTCGATTGA
51029929 GTTGGATCAA
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 110 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (116 bp):
TCTTCTTAGTGTGCTTAGAAGATCATTTTGGCATGTATAAGCTAGTACGTTGTGTTAGAATTATG
GCATGTAAACTTTAAGCCATGCGAAAATGGCACGAATGTTCGATTGAATTC
Found at i:51040430 original size:20 final size:21
Alignment explanation
Indices: 51040393--51040442 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
51040383 TTGATAAATT
51040393 TTACAAATATAGTTTTATTTA
1 TTACAAATATAGTTTTATTTA
*
51040414 TTACAAA-ATATTTTTATTTA
1 TTACAAATATAGTTTTATTTA
*
51040434 ATA-AAATAT
1 TTACAAATAT
51040443 GGATAATAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 3 0.12
20 16 0.62
21 7 0.27
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (21 bp):
TTACAAATATAGTTTTATTTA
Found at i:51041195 original size:27 final size:25
Alignment explanation
Indices: 51041164--51041233 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 25
51041154 ATTTAAATTT
** *
51041164 ATTTTATCTTTAAAAAGTATGTATTAC
1 ATTTTATAATTAAAAA-TACGTATT-C
51041191 ATTTTTATAATTAAAAATACGTATTC
1 A-TTTTATAATTAAAAATACGTATTC
*
51041217 ATTTTTACAATTAAAAA
1 A-TTTTATAATTAAAAA
51041234 ATATATATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 17 0.45
27 8 0.21
28 13 0.34
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (25 bp):
ATTTTATAATTAAAAATACGTATTC
Found at i:51041228 original size:26 final size:28
Alignment explanation
Indices: 51041173--51041233 Score: 90
Period size: 26 Copynumber: 2.2 Consensus size: 28
51041163 TATTTTATCT
* *
51041173 TTAAAAAGTATGTATTACATTTTTATAA
1 TTAAAAAGTACGTATTACATTTTTACAA
51041201 TTAAAAA-TACGTATT-CATTTTTACAA
1 TTAAAAAGTACGTATTACATTTTTACAA
51041227 TTAAAAA
1 TTAAAAA
51041234 ATATATATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 17 0.55
27 7 0.23
28 7 0.23
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.43
Consensus pattern (28 bp):
TTAAAAAGTACGTATTACATTTTTACAA
Found at i:51041242 original size:27 final size:28
Alignment explanation
Indices: 51041173--51041244 Score: 94
Period size: 27 Copynumber: 2.6 Consensus size: 28
51041163 TATTTTATCT
* *
51041173 TTAAAAAGTATGTATTACATTTTTATAA
1 TTAAAAAATATGTATTACATTTTTACAA
*
51041201 TT-AAAAATACGTATT-CATTTTTACAA
1 TTAAAAAATATGTATTACATTTTTACAA
*
51041227 TTAAAAAATATATATTAC
1 TTAAAAAATATGTATTAC
51041245 CAACTTCAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 12 0.32
27 22 0.59
28 3 0.08
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (28 bp):
TTAAAAAATATGTATTACATTTTTACAA
Found at i:51047771 original size:40 final size:40
Alignment explanation
Indices: 51047727--51047950 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
51047717 AAGTGAATAT
* * * * **
51047727 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
51047767 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
51047807 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
51047847 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
51047887 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
51047926 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
51047951 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:51047825 original size:80 final size:80
Alignment explanation
Indices: 51047688--51047950 Score: 318
Period size: 80 Copynumber: 3.3 Consensus size: 80
51047678 TTGAATGCTG
* * * * *
51047688 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
51047750 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
51047768 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
51047833 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * *
51047848 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
51047912 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
51047927 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
51047951 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.22
80 116 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:51047902 original size:120 final size:120
Alignment explanation
Indices: 51047688--51047950 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
51047678 TTGAATGCTG
* * *
51047688 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* **
51047752 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * *
51047808 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* ** * *
51047870 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
51047927 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
51047951 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.28
120 80 0.66
121 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:51059832 original size:47 final size:47
Alignment explanation
Indices: 51059779--51059890 Score: 134
Period size: 47 Copynumber: 2.4 Consensus size: 47
51059769 TTCCTTTAAG
* * * * * *
51059779 TATTTAATTTGTCTTAAGTTTATTTAGTTTGTTCTAATTAGTTCAGC
1 TATTTAATATGTCTTAAGTTTATTTAATATGTTCTAATTAATACAAC
* * *
51059826 TATTTAATATGTCCTAAGTTTATTTAATATGTTTTAGTTAATACAAC
1 TATTTAATATGTCTTAAGTTTATTTAATATGTTCTAATTAATACAAC
*
51059873 TATTTAATGTGTCTTAAG
1 TATTTAATATGTCTTAAG
51059891 CTTAGGCAAA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.29, C:0.08, G:0.12, T:0.52
Consensus pattern (47 bp):
TATTTAATATGTCTTAAGTTTATTTAATATGTTCTAATTAATACAAC
Found at i:51063584 original size:43 final size:40
Alignment explanation
Indices: 51063486--51063596 Score: 109
Period size: 43 Copynumber: 2.7 Consensus size: 40
51063476 TGTGTTGTCG
* * *
51063486 TGTAAGACCAAGTCTGGAACATTGGCATCGACTTGTTACG
1 TGTAAGACCAAGTCTGGGACAGTGGCATCGACTTGTTACA
* *
51063526 TGTAAGACTC-TGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGAC-CAAGTCTGGGACAGTGGCATCG--ACTTG-TTACA
*
51063569 TGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TGTAAGACCAAGTCTGGGACAG-TGGCAT
51063597 TGTACAAGGT
Statistics
Matches: 59, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
40 25 0.42
41 1 0.02
42 6 0.10
43 27 0.46
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (40 bp):
TGTAAGACCAAGTCTGGGACAGTGGCATCGACTTGTTACA
Found at i:51066422 original size:191 final size:190
Alignment explanation
Indices: 51066030--51066448 Score: 429
Period size: 190 Copynumber: 2.2 Consensus size: 190
51066020 CTTACTGCTG
* * * * * *
51066030 TTTTAAAGGTTTAGCCTAGACGGGTAACCTTACATGTATATTTTCAACTGGCCAAGCAATTTGAT
1 TTTTAAAGGTTTAGCCTGGACGGGTAACCTGACATGTATATCTACAACTGACCAAGCAACTTGAT
* **
51066095 GTGTCTTCAAAGGTTTAGCTCGGACAGGTAACCTGATACAAATATATATTTTCAACTCAGATGAG
66 GTGTATTCAAAGGTTTAGCTCGGACAGGTAACCTGA-ACAAATATATACATTCAACTCAGATGAG
* * * * ** * *
51066160 CAATTGATGTACCAAAGATACTTATGACACTAGTTTAGCTCAAATGAGTAACCTATTTTCG
130 CAATTGATATACCAAAGATACTTAGGACACAAATTTAGCTCAAACAAGTAACCTATTGTCA
* * *
51066221 TTTTAAAGGTTTAGCCTGGACGGGTAACCTGACTTGTATA-CTACAACTTTGACCTAGCTACTTG
1 TTTTAAAGGTTTAGCCTGGACGGGTAACCTGACATGTATATCTACAAC--TGACCAAGCAACTTG
* * * *
51066285 ATGTGTATTTAAAGGTTTAGCTTGGACGGGTAACCTG-ACATGAT-TATACATTCAACAT-AGAT
64 ATGTGTATTCAAAGGTTTAGCTCGGACAGGTAACCTGAACA-AATATATACATTCAAC-TCAGAT
* * * * * **
51066347 GGGCAATTGATATATCAAAGATACTTGGGACACAAATTTAGCTTAGACAAGTAATTTGA-TGTCA
127 GAGCAATTGATATACCAAAGATACTTAGGACACAAATTTAGCTCAAACAAGTAACCT-ATTGTCA
* *
51066411 TTTTAAAAGGTTTAACCCGGACGGGTAACCT-A-ATGTAT
1 TTTT-AAAGGTTTAGCCTGGACGGGTAACCTGACATGTAT
51066449 GCTTATAAAT
Statistics
Matches: 188, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
189 5 0.03
190 74 0.39
191 65 0.35
192 44 0.23
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (190 bp):
TTTTAAAGGTTTAGCCTGGACGGGTAACCTGACATGTATATCTACAACTGACCAAGCAACTTGAT
GTGTATTCAAAGGTTTAGCTCGGACAGGTAACCTGAACAAATATATACATTCAACTCAGATGAGC
AATTGATATACCAAAGATACTTAGGACACAAATTTAGCTCAAACAAGTAACCTATTGTCA
Found at i:51068850 original size:21 final size:21
Alignment explanation
Indices: 51068789--51068837 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
51068779 GTTTTCTTGT
51068789 TGGTTTAGTGCATTATTTTGA
1 TGGTTTAGTGCATTATTTTGA
51068810 TGGTTTAGTGCATTATTTTGA
1 TGGTTTAGTGCATTATTTTGA
51068831 TGGTTTA
1 TGGTTTA
51068838 AGTGATTTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.18, C:0.04, G:0.24, T:0.53
Consensus pattern (21 bp):
TGGTTTAGTGCATTATTTTGA
Found at i:51075909 original size:25 final size:25
Alignment explanation
Indices: 51075861--51075912 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
51075851 GCATAGTTTT
** *
51075861 GGTGCTTGTAGGTTTGGCCTAATTG
1 GGTGCTTGTAGGTTTAACCCAATTG
51075886 GGTGCTTGTAGGTTTAACCCAATTG
1 GGTGCTTGTAGGTTTAACCCAATTG
51075911 GG
1 GG
51075913 GTGGCAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.15, C:0.13, G:0.35, T:0.37
Consensus pattern (25 bp):
GGTGCTTGTAGGTTTAACCCAATTG
Found at i:51077074 original size:48 final size:48
Alignment explanation
Indices: 51077020--51077287 Score: 290
Period size: 48 Copynumber: 5.6 Consensus size: 48
51077010 TGAGATCCTA
* * *
51077020 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGATCTCG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCTAG
* * * * *
51077068 TATAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTG-TGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGAT-CTAG
* * * *
51077116 TGTAAAACCATGTCTGGGACATGGCATCAGCCTCGATG-TGTGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GATGTGATCTAG
* * * *
51077164 TGTAAGACCATGTCTAGGACATGGCATCGGCCTCAACG-TGTGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GATGTGATCTAG
* * * * * *
51077212 TGTAAGACCATGTCTGGGACATGGAATCGACATTGATATGTGATTTCG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCTAG
51077260 TGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
51077288 ATTATGAGAC
Statistics
Matches: 184, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
47 1 0.01
48 183 0.99
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCTAG
Found at i:51077139 original size:96 final size:96
Alignment explanation
Indices: 51077020--51077287 Score: 331
Period size: 96 Copynumber: 2.8 Consensus size: 96
51077010 TGAGATCCTA
* * * *
51077020 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGATCTCGTATAAGACCATGTTTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCTCGTGTAAGACCATGTCTGG
* ** * *
51077085 GACATGGCATCGGCGTTGATATGTGTGCTAG
66 GACATGGCATCGGCCTCAACATGTGAGCTAG
* * * * * *
51077116 TGTAAAACCATGTCTGGGACATGGCATCAGCCTCGATG-TGTGAGCTAGTGTAAGACCATGTCTA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GATGTGATCTCGTGTAAGACCATGTCTG
*
51077180 GGACATGGCATCGGCCTCAACGTGTGAGCTAG
65 GGACATGGCATCGGCCTCAACATGTGAGCTAG
* * * * *
51077212 TGTAAGACCATGTCTGGGACATGGAATCGACATTGATATGTGATTTCGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCTCGTGTAAGACCATGTCTGG
51077277 GACATGGCATC
66 GACATGGCATC
51077288 ATTATGAGAC
Statistics
Matches: 143, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
96 142 0.99
97 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCTCGTGTAAGACCATGTCTGG
GACATGGCATCGGCCTCAACATGTGAGCTAG
Found at i:51077189 original size:144 final size:144
Alignment explanation
Indices: 51077020--51077288 Score: 371
Period size: 144 Copynumber: 1.9 Consensus size: 144
51077010 TGAGATCCTA
* * * * * *
51077020 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-GATGAGATCTCGTATAAGACCATGTTTG
1 TGTAAGACCATGTCTAGGACATGGCATCGGCATCAACG-TGAGAGCTAGTATAAGACCATGTCTG
* * *
51077084 GGACATGGCATCGGCGTTGATATGTG-TGCTAGTGTAAAACCATGTCTGGGACATGGCATCAGCC
65 GGACATGGAATCGACATTGATATGTGAT-CTAGTGTAAAACCATGTCTGGGACATGGCATCAGCC
51077148 TCGATGTGTGAGCTAG
129 TCGATGTGTGAGCTAG
* * *
51077164 TGTAAGACCATGTCTAGGACATGGCATCGGCCTCAACGTGTGAGCTAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTAGGACATGGCATCGGCATCAACGTGAGAGCTAGTATAAGACCATGTCTGG
* * *
51077229 GACATGGAATCGACATTGATATGTGATTTCGTGTAAGACCATGTCTGGGACATGGCATCA
66 GACATGGAATCGACATTGATATGTGATCTAGTGTAAAACCATGTCTGGGACATGGCATCA
51077289 TTATGAGACA
Statistics
Matches: 108, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
144 106 0.98
145 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (144 bp):
TGTAAGACCATGTCTAGGACATGGCATCGGCATCAACGTGAGAGCTAGTATAAGACCATGTCTGG
GACATGGAATCGACATTGATATGTGATCTAGTGTAAAACCATGTCTGGGACATGGCATCAGCCTC
GATGTGTGAGCTAG
Found at i:51080773 original size:54 final size:53
Alignment explanation
Indices: 51080692--51080793 Score: 186
Period size: 54 Copynumber: 1.9 Consensus size: 53
51080682 ATAATAATAG
51080692 ATTAAATAAAAAAACAAATACAAAAGTATGACCATATTGCTTCATTATGATAA
1 ATTAAATAAAAAAACAAATACAAAAGTATGACCATATTGCTTCATTATGATAA
*
51080745 ATTAAATAAATAAAACAAATACAAAAGTATGGCCATATTGCTTCATTAT
1 ATTAAATAAA-AAAACAAATACAAAAGTATGACCATATTGCTTCATTAT
51080794 TGCCGAATAT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 10 0.21
54 37 0.79
ACGTcount: A:0.51, C:0.12, G:0.08, T:0.29
Consensus pattern (53 bp):
ATTAAATAAAAAAACAAATACAAAAGTATGACCATATTGCTTCATTATGATAA
Found at i:51087096 original size:30 final size:30
Alignment explanation
Indices: 51087050--51087122 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
51087040 GAGGTGACAT
* * *
51087050 GAAAACCAAGACAAAGAAGCCCAAGACAAG
1 GAAATCCAAGATAAAGAAACCCAAGACAAG
* * * *
51087080 GAAATCCTAGATAAAGAAATCCAAGATACG
1 GAAATCCAAGATAAAGAAACCCAAGACAAG
51087110 GAAATCCAAGATA
1 GAAATCCAAGATA
51087123 CAATATTATA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.53, C:0.19, G:0.18, T:0.10
Consensus pattern (30 bp):
GAAATCCAAGATAAAGAAACCCAAGACAAG
Found at i:51087100 original size:15 final size:15
Alignment explanation
Indices: 51087050--51087122 Score: 65
Period size: 15 Copynumber: 4.9 Consensus size: 15
51087040 GAGGTGACAT
* *
51087050 GAAAACCAAGACAAA
1 GAAATCCAAGATAAA
** * *
51087065 GAAGCCCAAGACAAG
1 GAAATCCAAGATAAA
*
51087080 GAAATCCTAGATAAA
1 GAAATCCAAGATAAA
**
51087095 GAAATCCAAGATACG
1 GAAATCCAAGATAAA
51087110 GAAATCCAAGATA
1 GAAATCCAAGATA
51087123 CAATATTATA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 47 1.00
ACGTcount: A:0.53, C:0.19, G:0.18, T:0.10
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:51096685 original size:73 final size:73
Alignment explanation
Indices: 51096566--51096787 Score: 392
Period size: 73 Copynumber: 3.0 Consensus size: 73
51096556 ATGACACTCA
* ** *
51096566 AGAATTTTGAAAATAATTATTCCCTAGGTTG-TTCAGAACCTACAAGGAAAAAACTACTTGGTCA
1 AGAATTTCGAAAATAATTACACCCTAAGTTGTTTC-GAACCTACAAGGAAAAAACTACTTGGTCA
51096630 ATATTATTG
65 ATATTATTG
51096639 AGAATTTCGAAAATAATTACACCCTAAGTTGTTTCGAACCTACAAGGAAAAAACTACTTGGTCAA
1 AGAATTTCGAAAATAATTACACCCTAAGTTGTTTCGAACCTACAAGGAAAAAACTACTTGGTCAA
51096704 TATTATTG
66 TATTATTG
51096712 AGAATTTCGAAAATAATTACACCCTAAGTTGTTTCGAACCTACAAGGAAAAAACTACTTGGTCAA
1 AGAATTTCGAAAATAATTACACCCTAAGTTGTTTCGAACCTACAAGGAAAAAACTACTTGGTCAA
51096777 TATTATTG
66 TATTATTG
51096785 AGA
1 AGA
51096788 TGGCGTTGAA
Statistics
Matches: 144, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
73 141 0.98
74 3 0.02
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (73 bp):
AGAATTTCGAAAATAATTACACCCTAAGTTGTTTCGAACCTACAAGGAAAAAACTACTTGGTCAA
TATTATTG
Found at i:51097903 original size:22 final size:22
Alignment explanation
Indices: 51097878--51097965 Score: 106
Period size: 23 Copynumber: 3.9 Consensus size: 22
51097868 TTAGGGTTTT
*
51097878 TTAAGGTTTAATTA-ATTTAGGG
1 TTAAGGTTT-TTTAGATTTAGGG
51097900 TTAAGGTTTTTTAGGATTTAGGG
1 TTAAGGTTTTTTA-GATTTAGGG
*
51097923 TTAGGGTTTTTTAGGATTTAGGG
1 TTAAGGTTTTTTA-GATTTAGGG
*
51097946 TTAGGGTTTTTTAGGATTTA
1 TTAAGGTTTTTTA-GATTTA
51097966 TAATTTAAAG
Statistics
Matches: 62, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
21 3 0.05
22 9 0.15
23 50 0.81
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (22 bp):
TTAAGGTTTTTTAGATTTAGGG
Found at i:51097922 original size:23 final size:23
Alignment explanation
Indices: 51097892--51097965 Score: 139
Period size: 23 Copynumber: 3.2 Consensus size: 23
51097882 GGTTTAATTA
*
51097892 ATTTAGGGTTAAGGTTTTTTAGG
1 ATTTAGGGTTAGGGTTTTTTAGG
51097915 ATTTAGGGTTAGGGTTTTTTAGG
1 ATTTAGGGTTAGGGTTTTTTAGG
51097938 ATTTAGGGTTAGGGTTTTTTAGG
1 ATTTAGGGTTAGGGTTTTTTAGG
51097961 ATTTA
1 ATTTA
51097966 TAATTTAAAG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (23 bp):
ATTTAGGGTTAGGGTTTTTTAGG
Found at i:51097937 original size:16 final size:16
Alignment explanation
Indices: 51097857--51097924 Score: 50
Period size: 16 Copynumber: 4.2 Consensus size: 16
51097847 TTTTGCTCTT
51097857 GTTTTTTAGGGTTAGG
1 GTTTTTTAGGGTTAGG
*
51097873 GTTTTTTAAGGTTTA--
1 GTTTTTT-AGGGTTAGG
* * *
51097888 ATTAATTTAGGGTTAAG
1 GTT-TTTTAGGGTTAGG
*
51097905 GTTTTTTAGGATTTAGG
1 GTTTTTTAGG-GTTAGG
51097922 GTT
1 GTT
51097925 AGGGTTTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
15 8 0.21
16 16 0.41
17 15 0.38
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.51
Consensus pattern (16 bp):
GTTTTTTAGGGTTAGG
Done.