Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 168 of 187
Found at i:51097981 original size:46 final size:45
Alignment explanation
Indices: 51097892--51097980 Score: 106
Period size: 46 Copynumber: 1.9 Consensus size: 45
51097882 GGTTTAATTA
** *
51097892 ATTTAGGGTTAAGGTTTTTTAGGATTTAGGGTTAGGGTTTTTTAGG
1 ATTTAGGGTTAAGGTTTTTTAGGATTTAAAGTTAAGG-TTTTTAGG
* *
51097938 ATTTAGGGTTAGGGTTTTTTAGGATTTATAATTTAAAGGTTTT
1 ATTTAGGGTTAAGGTTTTTTAGGATTTA-AAGTT-AAGGTTTT
51097981 AAGAAAAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
46 27 0.75
47 6 0.17
48 3 0.08
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.49
Consensus pattern (45 bp):
ATTTAGGGTTAAGGTTTTTTAGGATTTAAAGTTAAGGTTTTTAGG
Found at i:51098089 original size:16 final size:16
Alignment explanation
Indices: 51098068--51098099 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
51098058 ATTAAGGTTA
51098068 ATTGATTAAATTAGGG
1 ATTGATTAAATTAGGG
51098084 ATTGATTAAATTAGGG
1 ATTGATTAAATTAGGG
51098100 TTAATTGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (16 bp):
ATTGATTAAATTAGGG
Found at i:51098108 original size:19 final size:19
Alignment explanation
Indices: 51098058--51098127 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
51098048 AGTTTAGGGT
*
51098058 ATTAAGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
51098077 ATTAGGG---ATTGATTAA
1 ATTAGGGTTAATTGATTAA
51098093 ATTAGGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
* **
51098112 TTTACAGTTAATTGAT
1 ATTAGGGTTAATTGAT
51098128 ACATAATCGT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
16 16 0.36
19 28 0.64
ACGTcount: A:0.37, C:0.01, G:0.19, T:0.43
Consensus pattern (19 bp):
ATTAGGGTTAATTGATTAA
Found at i:51098892 original size:126 final size:126
Alignment explanation
Indices: 51098662--51098916 Score: 375
Period size: 126 Copynumber: 2.0 Consensus size: 126
51098652 TTTTTGCAAG
* * * * * *
51098662 AATAATTTTGAGTAGACGTTTCTGAATAAATAATGTCGAAAACACTTCAGGCAGGATTCACTGTT
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAATGTCAAAAACACTTCAAGCAAGATACACTGTT
* * *
51098727 AGCAAAATTTCTAAAAAAAGCTCCCACGTTAACGTTCTTTTGCTTCAGTAGTTCGTAGAAA
66 AGCAAAATTTCTAAAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * *
51098788 AATAATTCTGAGTAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATACACTGTT
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAATGTCAAAAACACTTCAAGCAAGATACACTGTT
* * *
51098853 AGTAAAATTTCTAAAAAAAGCTCCCATGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTAAAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
51098914 AAT
1 AAT
51098917 GAGGCTATAA
Statistics
Matches: 114, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
126 114 1.00
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (126 bp):
AATAATTCTGAGTAGACGTTTCTGAACAAATAATGTCAAAAACACTTCAAGCAAGATACACTGTT
AGCAAAATTTCTAAAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:51101438 original size:40 final size:40
Alignment explanation
Indices: 51101338--51101509 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
51101328 GCTCCTCGTT
* * *
51101338 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
51101378 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
51101417 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
51101457 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
51101497 CAAATGCCTTCGG
1 CAAATGCCTTCGG
51101510 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 79 0.68
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:51101522 original size:80 final size:79
Alignment explanation
Indices: 51101338--51101562 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
51101328 GCTCCTCGTT
* * * * *
51101338 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
51101402 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * *
51101417 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
** *
51101482 AATTT-GTATCTCGCA
64 AATTTAACAACTCGCA
* * * * *
51101497 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
51101561 GA
63 GA
51101563 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 68 0.56
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAACAACTCGCA
Found at i:51101571 original size:41 final size:41
Alignment explanation
Indices: 51101494--51101571 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
51101484 TTTGTATCTC
* * *
51101494 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
51101535 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
51101572 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:51108868 original size:19 final size:19
Alignment explanation
Indices: 51108844--51108889 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
51108834 AATGCCTATT
51108844 TTTGCATT-CATTGCATGCA
1 TTTGCATTGCATTGCAT-CA
51108863 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATTGCATCA
*
51108882 TATGCATT
1 TTTGCATT
51108890 AAACTTCACA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.43
Consensus pattern (19 bp):
TTTGCATTGCATTGCATCA
Found at i:51109587 original size:15 final size:15
Alignment explanation
Indices: 51109563--51109592 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51109553 CTAGTGCTCC
51109563 CTCCAAAGTTTAAAA
1 CTCCAAAGTTTAAAA
*
51109578 CTCCAGAGTTTAAAA
1 CTCCAAAGTTTAAAA
51109593 AGTATAATGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (15 bp):
CTCCAAAGTTTAAAA
Found at i:51115799 original size:18 final size:18
Alignment explanation
Indices: 51115773--51115813 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
51115763 GACTAGGAAA
* *
51115773 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
51115791 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
51115809 AGGAT
1 AGGAT
51115814 GCGCACCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.41, C:0.07, G:0.29, T:0.22
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:51116006 original size:20 final size:20
Alignment explanation
Indices: 51115981--51116020 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
51115971 TCGCCTCTCC
51115981 TCTTCCGACAATAAATATGG
1 TCTTCCGACAATAAATATGG
* *
51116001 TCTTCCGATAGTAAATATGG
1 TCTTCCGACAATAAATATGG
51116021 CTTGCCGTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (20 bp):
TCTTCCGACAATAAATATGG
Found at i:51117566 original size:48 final size:47
Alignment explanation
Indices: 51117446--51117580 Score: 146
Period size: 48 Copynumber: 2.8 Consensus size: 47
51117436 ATGCAAACAT
* * ** *
51117446 CATAAACGAAAAAAAAATCAAGCAATATTGAAATTTTAATTATAATTG
1 CATAAATGAAAAAAATATCAAATAGTATTGAAA-TTTAATTATAATTG
*
51117494 CATAAATGAATAAAATATCAAATAGTATTGCAAATTTAATTA-AATTTG
1 CATAAATGAAAAAAATATCAAATAGTATTG-AAATTTAATTATAA-TTG
* **
51117542 CATAAATTAAAAAAATATTGAATAGTATTGGAAATTTAA
1 CATAAATGAAAAAAATATCAAATAGTATT-GAAATTTAA
51117581 AATTATCACT
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
47 2 0.03
48 68 0.92
49 4 0.05
ACGTcount: A:0.53, C:0.06, G:0.09, T:0.33
Consensus pattern (47 bp):
CATAAATGAAAAAAATATCAAATAGTATTGAAATTTAATTATAATTG
Found at i:51117714 original size:15 final size:16
Alignment explanation
Indices: 51117682--51117714 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
51117672 TTTTTACTTT
51117682 AAAAAAATTAAATTCAA
1 AAAAAAATTAAA-TCAA
51117699 AAAAAAATTAAA-CAA
1 AAAAAAATTAAATCAA
51117714 A
1 A
51117715 GAATTTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
17 12 0.75
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAAAATTAAATCAA
Found at i:51123889 original size:19 final size:19
Alignment explanation
Indices: 51123867--51123910 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
51123857 TATAACAACA
51123867 ACATTCATAGTTATAGAGT
1 ACATTCATAGTTATAGAGT
51123886 ACATTCATAGTTATAGAGT
1 ACATTCATAGTTATAGAGT
51123905 ACATTC
1 ACATTC
51123911 TTCATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (19 bp):
ACATTCATAGTTATAGAGT
Found at i:51129073 original size:50 final size:50
Alignment explanation
Indices: 51129019--51129121 Score: 179
Period size: 50 Copynumber: 2.1 Consensus size: 50
51129009 AGTCTGAATC
*
51129019 AACAACTTGTTTGCATCCAATAACCTGCATTAGAGACATATTTTGAATTA
1 AACAACTTGTTTGCATCCAATAACCTACATTAGAGACATATTTTGAATTA
* *
51129069 AACAACTTGTTTGCATCCATTACCCTACATTAGAGACATATTTTGAATTA
1 AACAACTTGTTTGCATCCAATAACCTACATTAGAGACATATTTTGAATTA
51129119 AAC
1 AAC
51129122 TTAGGCTAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (50 bp):
AACAACTTGTTTGCATCCAATAACCTACATTAGAGACATATTTTGAATTA
Found at i:51130794 original size:129 final size:129
Alignment explanation
Indices: 51130563--51130822 Score: 396
Period size: 129 Copynumber: 2.0 Consensus size: 129
51130553 TTGATTAATT
* * * *
51130563 AAATTCCATTAATGCAATTTAAACCAGTGTAGCTGATTCATTGACTTTTTGTTGTTGATTGTTCA
1 AAATTCCATTAATGCAATTAAAACCAGTGCAGCTGATTCATTGACTTCTTGTTATTGATTGTTCA
*
51130628 CTATTCTTTTACCAATACTAAACCTAGAAACGGTGGTTCTTTTATTTGAGATTTTTTATCAATAA
66 CTATTCTTTTACCAATACTAAACCTAGAAACGGTGGTT-TTTTATTTCAGATTTTTTATCAATAA
* * *
51130693 AAATTCCATTAATGCTATTAAAACCATTGCAGGTGATTCATTGACTTCTT-TTATTGATTGTTCA
1 AAATTCCATTAATGCAATTAAAACCAGTGCAGCTGATTCATTGACTTCTTGTTATTGATTGTTCA
* * * *
51130757 CTTTTCTTTTATCAATACTAAAGCTAGAAATGGTGGTTTTTTATTTCAGATTTTTTATCAATAA
66 CTATTCTTTTACCAATACTAAACCTAGAAACGGTGGTTTTTTATTTCAGATTTTTTATCAATAA
51130821 AA
1 AA
51130823 TTTTCATTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
128 27 0.23
129 47 0.40
130 44 0.37
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (129 bp):
AAATTCCATTAATGCAATTAAAACCAGTGCAGCTGATTCATTGACTTCTTGTTATTGATTGTTCA
CTATTCTTTTACCAATACTAAACCTAGAAACGGTGGTTTTTTATTTCAGATTTTTTATCAATAA
Found at i:51133925 original size:30 final size:29
Alignment explanation
Indices: 51133856--51133926 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 29
51133846 ATCGGCATAG
* *
51133856 AGTGCCTGGTAACCGTAACACTGGTACAA
1 AGTGCCTGATAACCGTAACACTGGCACAA
* * *
51133885 AGTACCTGATAACTGTAATCACTGGCACAT
1 AGTGCCTGATAACCGTAA-CACTGGCACAA
*
51133915 AGTGCTTGATAA
1 AGTGCCTGATAA
51133927 ACCCTAATGA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
29 15 0.44
30 19 0.56
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (29 bp):
AGTGCCTGATAACCGTAACACTGGCACAA
Found at i:51139111 original size:6 final size:5
Alignment explanation
Indices: 51139080--51139120 Score: 64
Period size: 5 Copynumber: 7.8 Consensus size: 5
51139070 AATATGTTTG
51139080 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAAT ATAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT A-AAAT AAAA
51139121 GTATAAATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 24 0.71
6 10 0.29
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:51139170 original size:22 final size:22
Alignment explanation
Indices: 51139138--51139181 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
51139128 TTGGGTATGA
*
51139138 TCATTTTGCATGTTTGATTAAG
1 TCATTTCGCATGTTTGATTAAG
51139160 TCATTTCGCATGTTTGATTAAG
1 TCATTTCGCATGTTTGATTAAG
51139182 CCTAAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.48
Consensus pattern (22 bp):
TCATTTCGCATGTTTGATTAAG
Found at i:51141870 original size:17 final size:18
Alignment explanation
Indices: 51141850--51141890 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
51141840 TTAGAGGAAT
*
51141850 AAAAATAAATAAATAAA-
1 AAAAATAAATAAAGAAAG
*
51141867 AAAAGTAAATAAAGAAAG
1 AAAAATAAATAAAGAAAG
51141885 AAAAAT
1 AAAAAT
51141891 GAACAAATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (18 bp):
AAAAATAAATAAAGAAAG
Found at i:51145660 original size:29 final size:28
Alignment explanation
Indices: 51145624--51145701 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
51145614 TCATGAGATT
51145624 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
51145654 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
51145681 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
51145702 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:51145919 original size:174 final size:174
Alignment explanation
Indices: 51145654--51145981 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
51145644 AAATTGTACA
51145654 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
51145719 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
51145784 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
51145828 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
51145893 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
51145958 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
51145982 ACCTTGAGTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:51149246 original size:47 final size:47
Alignment explanation
Indices: 51149172--51149265 Score: 125
Period size: 47 Copynumber: 2.0 Consensus size: 47
51149162 TTTGTATTCT
* * *
51149172 GATATTTAGAATGCAAAACCTTTTCTGATCAATATTTGAGAACATAA
1 GATATCTAGAACGCAAAACCTTCTCTGATCAATATTTGAGAACATAA
* ** *
51149219 GATATCTAGAACGCAAGACCTTCTCTGATTGATATTTGAGCACATAA
1 GATATCTAGAACGCAAAACCTTCTCTGATCAATATTTGAGAACATAA
51149266 CATTACCATG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (47 bp):
GATATCTAGAACGCAAAACCTTCTCTGATCAATATTTGAGAACATAA
Found at i:51152907 original size:29 final size:29
Alignment explanation
Indices: 51152839--51152910 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 29
51152829 ATCCACCACT
* * *
51152839 AATACATAGTACCTGATAACTGTAACATC
1 AATACAAAGTACCTGATAAATGTAACACC
* * *
51152868 AGTACAGAGTACCTGATAAATGTAATACC
1 AATACAAAGTACCTGATAAATGTAACACC
*
51152897 AATTCAAAGTACCT
1 AATACAAAGTACCT
51152911 AAACTGTAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.26
Consensus pattern (29 bp):
AATACAAAGTACCTGATAAATGTAACACC
Found at i:51154585 original size:21 final size:21
Alignment explanation
Indices: 51154561--51154630 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
51154551 TGATCTGTAC
51154561 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* * **
51154582 TCA-TGATATATGTGACATCTGAAC
1 TCATTGA-GT-TGTG--GTCTGAGT
*
51154606 TCATTGAGTTGCGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
51154627 TCAT
1 TCAT
51154631 GATGTATGTG
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
20 3 0.09
21 13 0.37
22 4 0.11
23 3 0.09
24 9 0.26
25 3 0.09
ACGTcount: A:0.21, C:0.14, G:0.26, T:0.39
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:51154609 original size:45 final size:45
Alignment explanation
Indices: 51154553--51154643 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
51154543 GAATTATGTG
* *
51154553 ATCTGTACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTGCGGTCTGAGTTCATGATATATGTGAC
*
51154598 ATCTGAACTCATTGAGTTGCGGTCTGAGTTCATGATGTATGTGAC
1 ATCTGAACTCATTGAGTTGCGGTCTGAGTTCATGATATATGTGAC
51154643 A
1 A
51154644 CATGTTTTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.37
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGCGGTCTGAGTTCATGATATATGTGAC
Found at i:51161279 original size:45 final size:45
Alignment explanation
Indices: 51161210--51161295 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
51161200 ATGTGATCTG
*
51161210 AACTCATTAAGTTGTGGTCTGAGTTCATGATATACGTGACATCCA
1 AACTCATTAAGTTGTGGTCAGAGTTCATGATATACGTGACATCCA
* * *
51161255 AACTCATTGAGTTGTGGTCAGAGTTCATGATGTATGTGACA
1 AACTCATTAAGTTGTGGTCAGAGTTCATGATATACGTGACA
51161296 CATGTTTTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (45 bp):
AACTCATTAAGTTGTGGTCAGAGTTCATGATATACGTGACATCCA
Found at i:51168996 original size:47 final size:47
Alignment explanation
Indices: 51168937--51169315 Score: 544
Period size: 47 Copynumber: 8.1 Consensus size: 47
51168927 TTAGGATTTT
* ** * * *
51168937 ATGTGATAAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51168984 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51169031 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51169078 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
51169125 ATGTGATGAATGTGAACATGCATATGTGTGATAAGACTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51169172 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51169219 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
51169266 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCTGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
51169313 ATG
1 ATG
51169316 CGAAATGTGT
Statistics
Matches: 305, Mismatches: 26, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
47 302 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:51169342 original size:46 final size:46
Alignment explanation
Indices: 51169289--51169379 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
51169279 GGAAGTGTAT
** *
51169289 ATATGTGGTAAAGCTGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* *
51169335 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
51169380 TGTACATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.29
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:51188741 original size:65 final size:67
Alignment explanation
Indices: 51188628--51188763 Score: 186
Period size: 65 Copynumber: 2.1 Consensus size: 67
51188618 TGGTTGTTCG
*
51188628 TTGTCCTCCTTATTCTACTCTATTTTCAAATGTCATCCTCTCGATTTAATAACCCCTTTCGGGGG
1 TTGTCCTCCTTATTCTACTCTATTTTCAAATGTCATCCTCTCGATTTAATAACCCCTTTCGGGGC
51188693 CC
66 CC
* * ** * * *
51188695 TTGT-CTCCTTGTTCTGCTCTATTTT-TGATGTCCTCCTCTCGGTTTAATAACCCCTTTTGGGGC
1 TTGTCCTCCTTATTCTACTCTATTTTCAAATGTCATCCTCTCGATTTAATAACCCCTTTCGGGGC
51188758 CC
66 CC
51188760 TTGT
1 TTGT
51188764 TTGAGCTTTG
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
65 38 0.62
66 19 0.31
67 4 0.07
ACGTcount: A:0.13, C:0.29, G:0.15, T:0.43
Consensus pattern (67 bp):
TTGTCCTCCTTATTCTACTCTATTTTCAAATGTCATCCTCTCGATTTAATAACCCCTTTCGGGGC
CC
Found at i:51190542 original size:5 final size:5
Alignment explanation
Indices: 51190527--51190562 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
51190517 CATAATTAAT
* *
51190527 TCATA CCATA TAATA TCATA TCATA TCATA TCATA T
1 TCATA TCATA TCATA TCATA TCATA TCATA TCATA T
51190563 ATTTTCTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (5 bp):
TCATA
Found at i:51193528 original size:13 final size:13
Alignment explanation
Indices: 51193510--51193534 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51193500 TAATGGTATA
51193510 TTGAATCCATGAT
1 TTGAATCCATGAT
51193523 TTGAATCCATGA
1 TTGAATCCATGA
51193535 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:51195438 original size:47 final size:47
Alignment explanation
Indices: 51195385--51195585 Score: 366
Period size: 47 Copynumber: 4.3 Consensus size: 47
51195375 ACAAGATATG
51195385 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
51195432 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* **
51195479 TATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
51195526 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
51195573 TATATGTGATAAG
1 TATATGTGATAAG
51195586 TCCCGAAGGA
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 147 1.00
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:51199909 original size:46 final size:46
Alignment explanation
Indices: 51199856--51200031 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
51199846 TATTTGGGCA
* * *
51199856 TCCGAACTCATTGATTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*** * * *
51199902 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAAAGATGTA-AC-AAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAA--CG
* * *
51199949 TCCGAGCTCGTTGAGTTCAGTCCGAGTTCACTTATGAATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
51199995 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51200032 GTGGGTTACA
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 2 0.02
46 68 0.65
47 33 0.31
48 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:51200011 original size:93 final size:93
Alignment explanation
Indices: 51199852--51200023 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
51199842 AGGATATTTG
* * * * *
51199852 GGCATCCGAACTCATTGATTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTCAGTCCGAGTTCACTTATGAATGCGAACGCCCGAACTCGTTGAG
51199917 TTGAGTCCGAGTTCGAAAGATGTAACAA
66 TTGAGTCCGAGTTCGAAAGATGTAACAA
* * *
51199945 GGCATCCGAGCTCGTTGAGTTCAGTCCGAGTTCACTTATGAATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTCAGTCCGAGTTCACTTATGAATGCGAACGCCCGAACTCGTTGAG
51200010 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
51200024 ACTTATGGGT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTCAGTCCGAGTTCACTTATGAATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAAAGATGTAACAA
Found at i:51220597 original size:54 final size:54
Alignment explanation
Indices: 51220502--51220605 Score: 138
Period size: 54 Copynumber: 1.9 Consensus size: 54
51220492 CCGTGTAGCA
* *
51220502 ACCCATGTCTCTGCCTGTGTAACTTACTAACTTGAGACACACAGTC-GTGTCCCC
1 ACCCATGTCTCTGCCCGTGTAACTCACTAACTTGAGACACAC-GTCTGTGTCCCC
* * * *
51220556 ACCCGTGTCTCTGCCCGTGTAACTCACTTACTTGGGTCACACGTCTGTGT
1 ACCCATGTCTCTGCCCGTGTAACTCACTAACTTGAGACACACGTCTGTGT
51220606 TGCAAGTCAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
53 3 0.07
54 40 0.93
ACGTcount: A:0.18, C:0.33, G:0.19, T:0.30
Consensus pattern (54 bp):
ACCCATGTCTCTGCCCGTGTAACTCACTAACTTGAGACACACGTCTGTGTCCCC
Found at i:51222275 original size:20 final size:19
Alignment explanation
Indices: 51222237--51222276 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
51222227 TATTACACAA
*
51222237 TTCAATTTCACATTATATT
1 TTCAATTTCACACTATATT
*
51222256 TTCAATTTTTACACTATATT
1 TTCAA-TTTCACACTATATT
51222276 T
1 T
51222277 GCTTAAACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.55
Consensus pattern (19 bp):
TTCAATTTCACACTATATT
Found at i:51226468 original size:26 final size:27
Alignment explanation
Indices: 51226439--51226489 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
51226429 GACCGTAATG
51226439 CCCTTAGAAGGTAAATGACT-ATTTTA
1 CCCTTAGAAGGTAAATGACTGATTTTA
*
51226465 CCCTTCGAAGGTAAATGACTGATTT
1 CCCTTAGAAGGTAAATGACTGATTT
51226490 GTGCTATGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (27 bp):
CCCTTAGAAGGTAAATGACTGATTTTA
Found at i:51226558 original size:16 final size:16
Alignment explanation
Indices: 51226539--51226569 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
51226529 TGATTCTGAG
51226539 CATGACATACTGCATA
1 CATGACATACTGCATA
51226555 CATGACATACTGCAT
1 CATGACATACTGCAT
51226570 GGGGTTGGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (16 bp):
CATGACATACTGCATA
Found at i:51228841 original size:40 final size:40
Alignment explanation
Indices: 51228603--51228827 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
51228593 TTGAATGATG
* * * *
51228603 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
51228643 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
51228683 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51228722 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51228762 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51228803 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51228828 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 122 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51228849 original size:119 final size:119
Alignment explanation
Indices: 51228603--51228860 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
51228593 TTGAATGATG
* *
51228603 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
51228668 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
* * * **
51228722 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
51228785 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAA
* *
51228842 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
51228861 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.70
120 32 0.27
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
Found at i:51236691 original size:39 final size:40
Alignment explanation
Indices: 51236596--51236818 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
51236586 TTGAATGATG
*
51236596 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
51236634 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
51236675 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
51236714 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
51236753 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
51236792 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51236819 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:51236782 original size:79 final size:81
Alignment explanation
Indices: 51236596--51236818 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
51236586 TTGAATGATG
* * *
51236596 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
51236657 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
51236675 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
51236737 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
51236753 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
51236817 TG
66 TG
51236819 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:51236840 original size:79 final size:79
Alignment explanation
Indices: 51236596--51236851 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
51236586 TTGAATGATG
* * * *
51236596 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
51236657 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
51236675 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
51236739 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
51236753 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
51236817 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
51236833 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
51236852 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:51238716 original size:17 final size:17
Alignment explanation
Indices: 51238694--51238726 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
51238684 TTCAAGAAGG
51238694 GTTTTTAATGAAAACAT
1 GTTTTTAATGAAAACAT
51238711 GTTTTTAATGAAAACA
1 GTTTTTAATGAAAACA
51238727 CTTCAATGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.39
Consensus pattern (17 bp):
GTTTTTAATGAAAACAT
Found at i:51238928 original size:42 final size:43
Alignment explanation
Indices: 51238807--51238978 Score: 167
Period size: 43 Copynumber: 4.0 Consensus size: 43
51238797 AAAGCCCGTA
* * * * *
51238807 CGATGCCAACGTCCCAGATC-TGGTCTTACATGTAATC-AACTAT
1 CGATGCCAATGTCCCAGA-CAGGGTCTTACACGAAATCTCA-TAT
* *
51238850 CGATGCCACTGTCCCAGACAGTGTCTTACACGAAA--TCATAT
1 CGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCTCATAT
*
51238891 ACGATGCCAATGT-CCAGACAGGGTCTTACACATAAATCTCATAT
1 -CGATGCCAATGTCCCAGACAGGGTCTTACAC-GAAATCTCATAT
* *
51238935 CGATGCCAACGTCCCAGAC-GTGGTCTTACACGAAATCACATAT
1 CGATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCTCATAT
51238978 C
1 C
51238979 AGAGTCCTAT
Statistics
Matches: 108, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
41 20 0.19
42 16 0.15
43 50 0.46
44 22 0.20
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCTCATAT
Found at i:51246063 original size:50 final size:50
Alignment explanation
Indices: 51245984--51246174 Score: 220
Period size: 50 Copynumber: 3.8 Consensus size: 50
51245974 TTTGGGTAAG
* * * ** *
51245984 GAGGTCCCATGTAAGACTATGTTTAGGACATGGCATTGGCATTGAGATAA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
* *
51246034 GAGGTCCCATGTAAGACCATGTATGGGACATGGCGTTGGCACCGAGATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
** * * * *
51246084 GAGGTCCCCCGTAAGACCATGTCTGAGACATGGCATGGGCACCAATATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
** * *
51246134 GAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
51246175 ATAAAAAAAA
Statistics
Matches: 118, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 118 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
Found at i:51251612 original size:16 final size:15
Alignment explanation
Indices: 51251577--51251606 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51251567 GAGAAAATAA
51251577 AAAAAGAAATAAGAG
1 AAAAAGAAATAAGAG
51251592 AAAAAGAAA-AAGAG
1 AAAAAGAAATAAGAG
51251606 A
1 A
51251607 TCAAAAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (15 bp):
AAAAAGAAATAAGAG
Found at i:51259217 original size:42 final size:43
Alignment explanation
Indices: 51259115--51259278 Score: 140
Period size: 43 Copynumber: 3.8 Consensus size: 43
51259105 AGCACATACA
* * *
51259115 ATGCCAACGTCTCAGACATGGTCTTACATGTAATCAACTATCG
1 ATGCCAATGTCTCAGACATGGTCTTACACGAAATCAACTATCG
* *
51259158 ATGCCACTGTACT-AGACAGGGTCTTACACGAAATC-A-TATACG
1 ATGCCAATGT-CTCAGACATGGTCTTACACGAAATCAACTAT-CG
* * *
51259200 ATGCTAATGTCTCAGACATGGTCTTACACATAAATCTCAA--ATCA
1 ATGCCAATGTCTCAGACATGGTCTTACAC-GAAA--TCAACTATCG
* * * *
51259244 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATC
1 ATGCCAATGTCTCAGACATGGTCTTACACGAAATC
51259279 GCATATCAGA
Statistics
Matches: 98, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
41 7 0.07
42 26 0.27
43 33 0.34
44 27 0.28
45 4 0.04
46 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCTCAGACATGGTCTTACACGAAATCAACTATCG
Found at i:51261337 original size:20 final size:20
Alignment explanation
Indices: 51261320--51261364 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
51261310 CATTTACTCT
51261320 TCTATGAGTCATTTTACTAA
1 TCTATGAGTCATTTTACTAA
51261340 TCTATGAGTCATTTTACTAA
1 TCTATGAGTCATTTTACTAA
51261360 CTCTA
1 -TCTA
51261365 AACATACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.44
Consensus pattern (20 bp):
TCTATGAGTCATTTTACTAA
Found at i:51261466 original size:27 final size:27
Alignment explanation
Indices: 51261432--51261496 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
51261422 TAAGCTTAAC
* **
51261432 AAACACATTTGCGAACCTAGTTCGTCA
1 AAACACATTTGCGAACATAGTTCACCA
* *
51261459 AAATACATTTGTGAACATAGTTCACCA
1 AAACACATTTGCGAACATAGTTCACCA
51261486 AAACACATTTG
1 AAACACATTTG
51261497 ATCTGTCGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (27 bp):
AAACACATTTGCGAACATAGTTCACCA
Found at i:51267839 original size:15 final size:15
Alignment explanation
Indices: 51267820--51267875 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
51267810 TCTCTCTTTC
51267820 CTTTT-CACTTATTT
1 CTTTTACACTTATTT
* *
51267834 CTTTTTCAATCTCTTTTT
1 CTTTTAC-A-CT-TATTT
51267852 C-TTTACACTTATTT
1 CTTTTACACTTATTT
51267866 CTTTTACACT
1 CTTTTACACT
51267876 CATTCTCACT
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
14 10 0.29
15 11 0.32
16 2 0.06
17 6 0.18
18 5 0.15
ACGTcount: A:0.16, C:0.23, G:0.00, T:0.61
Consensus pattern (15 bp):
CTTTTACACTTATTT
Found at i:51267847 original size:33 final size:32
Alignment explanation
Indices: 51267792--51267870 Score: 106
Period size: 32 Copynumber: 2.5 Consensus size: 32
51267782 AAAATAGTCC
* *
51267792 TCACTCATTTC-TTTTCAGTCTCTCTTTCCTTT
1 TCACTTATTTCTTTTTCAATCTCT-TTTCCTTT
*
51267824 TCACTTATTTCTTTTTCAATCTCTTTTTCTTT
1 TCACTTATTTCTTTTTCAATCTCTTTTCCTTT
*
51267856 ACACTTATTTCTTTT
1 TCACTTATTTCTTTT
51267871 ACACTCATTC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
32 31 0.74
33 11 0.26
ACGTcount: A:0.13, C:0.25, G:0.01, T:0.61
Consensus pattern (32 bp):
TCACTTATTTCTTTTTCAATCTCTTTTCCTTT
Found at i:51285196 original size:14 final size:15
Alignment explanation
Indices: 51285171--51285200 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
51285161 CATTACTATT
51285171 CCATTACAAAACATG
1 CCATTACAAAACATG
51285186 CCATT-CAAAACATG
1 CCATTACAAAACATG
51285200 C
1 C
51285201 AACGTGATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.43, C:0.30, G:0.07, T:0.20
Consensus pattern (15 bp):
CCATTACAAAACATG
Found at i:51296178 original size:27 final size:28
Alignment explanation
Indices: 51296100--51296178 Score: 65
Period size: 27 Copynumber: 2.9 Consensus size: 28
51296090 TGACCACCCA
***
51296100 TGTTTATTATCCCAGCGAACTATC-CTG
1 TGTTTATTATCCCATATAACTATCTCTG
* * * *
51296127 TGTTTAATGTCTCATCAT-ACAATCTC-G
1 TGTTTATTATCCCAT-ATAACTATCTCTG
51296154 TGTTTATTATCCCATATAACTATCT
1 TGTTTATTATCCCATATAACTATCT
51296179 ATGATGTCGT
Statistics
Matches: 38, Mismatches: 11, Indels: 6
0.69 0.20 0.11
Matches are distributed among these distances:
26 2 0.05
27 35 0.92
28 1 0.03
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (28 bp):
TGTTTATTATCCCATATAACTATCTCTG
Found at i:51296388 original size:45 final size:45
Alignment explanation
Indices: 51296331--51296534 Score: 282
Period size: 45 Copynumber: 4.5 Consensus size: 45
51296321 TGTCTTAACG
* * * *
51296331 TCTTTCAGCTATGGTCTTTCTGATTTTTATCATGATGTCATAGCT
1 TCTTTCAGCTATGGTCTTACTCATTTTTATCATGATGCCATAGCA
* *
51296376 TCTTTCAACTATGGTCTTACTCATTTTTATCATGATACCATAGCA
1 TCTTTCAGCTATGGTCTTACTCATTTTTATCATGATGCCATAGCA
* * * *
51296421 TCTTTCAGCTATGGTCTTATTCATTTTTGTCACGATGCCATAGCG
1 TCTTTCAGCTATGGTCTTACTCATTTTTATCATGATGCCATAGCA
* *
51296466 TCTTTCAGCTATAGTCTTACTCATTTTTATCATAATGCCATAGCA
1 TCTTTCAGCTATGGTCTTACTCATTTTTATCATGATGCCATAGCA
* *
51296511 TCATTCAACTATGGTCTTACTCAT
1 TCTTTCAGCTATGGTCTTACTCAT
51296535 CTTGGCATAT
Statistics
Matches: 138, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 138 1.00
ACGTcount: A:0.23, C:0.22, G:0.12, T:0.44
Consensus pattern (45 bp):
TCTTTCAGCTATGGTCTTACTCATTTTTATCATGATGCCATAGCA
Found at i:51300532 original size:16 final size:16
Alignment explanation
Indices: 51300511--51300563 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
51300501 AGAGTGGAAA
*
51300511 GAAAATTAGAATGATG
1 GAAAATTAGAAAGATG
* *
51300527 GAAAATTAAAAAGATA
1 GAAAATTAGAAAGATG
* *
51300543 GAAAACTAGAAGGATG
1 GAAAATTAGAAAGATG
51300559 GAAAA
1 GAAAA
51300564 CATAATTTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.58, C:0.02, G:0.23, T:0.17
Consensus pattern (16 bp):
GAAAATTAGAAAGATG
Found at i:51304558 original size:13 final size:13
Alignment explanation
Indices: 51304537--51304568 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
51304527 TTGTTTAGGA
*
51304537 TGTGTAGTGAAAG
1 TGTGCAGTGAAAG
51304550 TGTGCAGTGAAAG
1 TGTGCAGTGAAAG
51304563 TGTGCA
1 TGTGCA
51304569 AAAATCAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.38, T:0.28
Consensus pattern (13 bp):
TGTGCAGTGAAAG
Found at i:51306167 original size:34 final size:34
Alignment explanation
Indices: 51306129--51306195 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
51306119 CTGGATAGTT
* * *
51306129 GAATTGTTTGAAATAATTTGTTTGAATTGCATGA
1 GAATTGCTTGAAATAATTTGATTAAATTGCATGA
**
51306163 GAATTGCTTGAAATGTTTTGATTAAATTGCATG
1 GAATTGCTTGAAATAATTTGATTAAATTGCATG
51306196 CGGGGTAGGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.31, C:0.04, G:0.21, T:0.43
Consensus pattern (34 bp):
GAATTGCTTGAAATAATTTGATTAAATTGCATGA
Found at i:51310649 original size:27 final size:27
Alignment explanation
Indices: 51310619--51310687 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
51310609 CCTTTACTAT
*
51310619 AATATATGAAAGGAACGCATTTGTGGC
1 AATATATGAAAGGAACGCATCTGTGGC
* *
51310646 AATATAT-AGAAGGAATGCCTCTGTGGC
1 AATATATGA-AAGGAACGCATCTGTGGC
*
51310673 AATATACGAAAGGAA
1 AATATATGAAAGGAA
51310688 TGCTTTAGTG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.03
27 34 0.94
28 1 0.03
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.23
Consensus pattern (27 bp):
AATATATGAAAGGAACGCATCTGTGGC
Found at i:51310698 original size:27 final size:25
Alignment explanation
Indices: 51310619--51310698 Score: 79
Period size: 27 Copynumber: 3.0 Consensus size: 25
51310609 CCTTTACTAT
*
51310619 AATATATGAAAGGAACGCATTTGTGGC
1 AATATA-GAAAGGAATGC-TTTGTGGC
* *
51310646 AATATATAGAAGGAATGCCTCTGTGGC
1 AATATAGA-AAGGAATG-CTTTGTGGC
51310673 AATATACGAAAGGAATGCTTTAGTGG
1 AATATA-GAAAGGAATGCTTT-GTGG
51310699 AAAACTTTGA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
26 4 0.09
27 38 0.86
28 2 0.05
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.26
Consensus pattern (25 bp):
AATATAGAAAGGAATGCTTTGTGGC
Found at i:51310710 original size:27 final size:27
Alignment explanation
Indices: 51310680--51310747 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
51310670 GGCAATATAC
* * *
51310680 GAAAGGAATGCTTTAGTGGAAAACTTT
1 GAAAGGAATGCCTTAGAGGAAAACTCT
* * * *
51310707 GAAAAGAATACCTTCGAGGCAAACTCT
1 GAAAGGAATGCCTTAGAGGAAAACTCT
51310734 GAAAGGAATGCCTT
1 GAAAGGAATGCCTT
51310748 GACGGTATAC
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (27 bp):
GAAAGGAATGCCTTAGAGGAAAACTCT
Found at i:51316158 original size:13 final size:13
Alignment explanation
Indices: 51316140--51316166 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51316130 TTTCCAAAAA
51316140 TTATGAATTTATT
1 TTATGAATTTATT
51316153 TTATGAATTTATT
1 TTATGAATTTATT
51316166 T
1 T
51316167 AATGTTGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:51316328 original size:50 final size:50
Alignment explanation
Indices: 51316268--51316486 Score: 285
Period size: 50 Copynumber: 4.4 Consensus size: 50
51316258 TTGGGTAAAA
* *
51316268 AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGACACCGAGATGAG
1 AGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAG
*
51316318 AGGTCTCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAG
1 AGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAG
**
51316368 AGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACTAAGATGAG
1 AGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAG
* ** * * * * * *
51316418 AAGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCTATATGAG
1 AGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAG
** *
51316468 AACTCTCATGTAAGACCAT
1 AGGTCCCATGTAAGACCAT
51316487 ATTTGAGATA
Statistics
Matches: 149, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 149 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
AGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAG
Found at i:51317043 original size:22 final size:21
Alignment explanation
Indices: 51317013--51317057 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
51317003 TACACCAAAA
*
51317013 TAGGTCTTTAGCGGCGTTTATT
1 TAGGCCTTTAGCGGCGTTT-TT
51317035 TAGGCCTTTAGCGGCGTTTTT
1 TAGGCCTTTAGCGGCGTTTTT
51317056 TA
1 TA
51317058 ACGCCACTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.13, C:0.16, G:0.27, T:0.44
Consensus pattern (21 bp):
TAGGCCTTTAGCGGCGTTTTT
Found at i:51317264 original size:41 final size:42
Alignment explanation
Indices: 51317178--51317279 Score: 154
Period size: 42 Copynumber: 2.5 Consensus size: 42
51317168 AAAAACACCA
* *
51317178 CTAAAGATCATGTTCTTTAGCGGCGTTTTTTCTTAAGCGCCG
1 CTAAAGAACATGTTCTTTAGCGGCATTTTTTCTTAAGCGCCG
*
51317220 CTAAAGAACATAG-TCTTTAGCGGCATTTTTTC-TAAGCGCTG
1 CTAAAGAACAT-GTTCTTTAGCGGCATTTTTTCTTAAGCGCCG
51317261 CTAAAGAACATGTTCTTTA
1 CTAAAGAACATGTTCTTTA
51317280 ACAGCGCTTT
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
40 1 0.02
41 25 0.45
42 28 0.51
43 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (42 bp):
CTAAAGAACATGTTCTTTAGCGGCATTTTTTCTTAAGCGCCG
Found at i:51317632 original size:21 final size:20
Alignment explanation
Indices: 51317606--51317676 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 20
51317596 TTTTGCTCTA
*
51317606 CTCTGCTTCTCTCGCTACAGC
1 CTCTGCTTC-CTCGCTGCAGC
51317627 CTCTGCTTCCTTCGCTGCAGC
1 CTCTGCTTCC-TCGCTGCAGC
* *
51317648 CGCTGCTTCCCTCGCTGCCGC
1 CTCTGCTT-CCTCGCTGCAGC
51317669 CTCTGCTT
1 CTCTGCTT
51317677 TAAGTTGTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
20 1 0.02
21 41 0.93
22 2 0.05
ACGTcount: A:0.04, C:0.45, G:0.18, T:0.32
Consensus pattern (20 bp):
CTCTGCTTCCTCGCTGCAGC
Found at i:51320410 original size:9 final size:9
Alignment explanation
Indices: 51320396--51320698 Score: 134
Period size: 9 Copynumber: 35.0 Consensus size: 9
51320386 TAAATATTAA
51320396 TAAGTTATG
1 TAAGTTATG
51320405 TAAGTTAT-
1 TAAGTTATG
*
51320413 T-A--TAAG
1 TAAGTTATG
51320419 TAAGTTATG
1 TAAGTTATG
* *
51320428 AAAGTTATATA
1 TAAG-T-TATG
51320439 TAAG-T-TG
1 TAAGTTATG
51320446 TATA-TTATG
1 TA-AGTTATG
* *
51320455 TAAGTTTTT
1 TAAGTTATG
*
51320464 TAAGTTATA
1 TAAGTTATG
*
51320473 TAAGTTGTG
1 TAAGTTATG
51320482 T-A-TTATG
1 TAAGTTATG
51320489 TAAGTTATG
1 TAAGTTATG
*
51320498 TAAG-TCTG
1 TAAGTTATG
51320506 ATAAGTTATG
1 -TAAGTTATG
*
51320516 TTTAG-TAT-
1 -TAAGTTATG
51320524 TAA-TTAAT-
1 TAAGTT-ATG
51320532 TAAGTTATG
1 TAAGTTATG
*
51320541 TAAGTTGTG
1 TAAGTTATG
*
51320550 TAAGTTGTG
1 TAAGTTATG
51320559 T-A-TTATG
1 TAAGTTATG
51320566 TAAGTTATG
1 TAAGTTATG
*
51320575 TAAG-TCTG
1 TAAGTTATG
*
51320583 ACAAGTTATG
1 -TAAGTTATG
* *
51320593 TTTAG-AAT-
1 -TAAGTTATG
51320601 TAA-TTAAT-
1 TAAGTT-ATG
51320609 TAAGTTATG
1 TAAGTTATG
51320618 TAAGTTATG
1 TAAGTTATG
*
51320627 TATAATATTAATG
1 --TAA-GTT-ATG
51320640 TAAGTTATG
1 TAAGTTATG
51320649 T-A-TTATG
1 TAAGTTATG
*
51320656 TAAGTTATT
1 TAAGTTATG
*
51320665 TTAGTTATG
1 TAAGTTATG
*
51320674 TAAGTTGTG
1 TAAGTTATG
51320683 T-A-TTATG
1 TAAGTTATG
*
51320690 TGAGTTATG
1 TAAGTTATG
51320699 CAATTTACGT
Statistics
Matches: 223, Mismatches: 37, Indels: 68
0.68 0.11 0.21
Matches are distributed among these distances:
5 2 0.01
6 1 0.00
7 31 0.14
8 33 0.15
9 125 0.56
10 14 0.06
11 12 0.05
12 2 0.01
13 3 0.01
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:51320423 original size:23 final size:24
Alignment explanation
Indices: 51320389--51320443 Score: 80
Period size: 23 Copynumber: 2.4 Consensus size: 24
51320379 CTCCATATAA
*
51320389 ATAT-TAA-TAAGTTATGTAAGTT
1 ATATATAAGTAAGTTATGAAAGTT
51320411 AT-TATAAGTAAGTTATGAAAGTT
1 ATATATAAGTAAGTTATGAAAGTT
51320434 ATATATAAGT
1 ATATATAAGT
51320444 TGTATATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 1 0.03
22 5 0.17
23 16 0.55
24 7 0.24
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.42
Consensus pattern (24 bp):
ATATATAAGTAAGTTATGAAAGTT
Found at i:51320502 original size:34 final size:34
Alignment explanation
Indices: 51320435--51320579 Score: 130
Period size: 34 Copynumber: 4.0 Consensus size: 34
51320425 ATGAAAGTTA
* * *
51320435 TATATAAGTTGTATATTATGTAAGTTTTTTAAGT
1 TATATAAGTTGTGTATTATGTAAGTTATGTAAGT
51320469 TATATAAGTTGTGTATTATGTAAGTTATGTAAGT
1 TATATAAGTTGTGTATTATGTAAGTTATGTAAGT
* *
51320503 CT-GATAAGTTATGTTTAGTATTAATTAATTAAGTTATGTAAGT
1 -TATATAAG-T-TG--T-GTATT-A-T--GTAAGTTATGTAAGT
* *
51320546 TGTGTAAGTTGTGTATTATGTAAGTTATGTAAGT
1 TATATAAGTTGTGTATTATGTAAGTTATGTAAGT
51320580 CTGACAAGTT
Statistics
Matches: 92, Mismatches: 8, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
34 50 0.54
35 2 0.02
36 3 0.03
37 1 0.01
38 6 0.07
39 6 0.07
40 1 0.01
41 3 0.03
42 2 0.02
43 18 0.20
ACGTcount: A:0.32, C:0.01, G:0.19, T:0.48
Consensus pattern (34 bp):
TATATAAGTTGTGTATTATGTAAGTTATGTAAGT
Found at i:51320537 original size:77 final size:77
Alignment explanation
Indices: 51320455--51320625 Score: 288
Period size: 77 Copynumber: 2.2 Consensus size: 77
51320445 GTATATTATG
* * *
51320455 TAAGTTTTTTAAGTTATATAAGTTGTGTATTATGTAAGTTATGTAAGTCTGATAAGTTATGTTTA
1 TAAGTTATGTAAGTTATATAAGTTGTGTATTATGTAAGTTATGTAAGTCTGACAAGTTATGTTTA
*
51320520 GTATTAATTAAT
66 GAATTAATTAAT
* *
51320532 TAAGTTATGTAAGTTGTGTAAGTTGTGTATTATGTAAGTTATGTAAGTCTGACAAGTTATGTTTA
1 TAAGTTATGTAAGTTATATAAGTTGTGTATTATGTAAGTTATGTAAGTCTGACAAGTTATGTTTA
51320597 GAATTAATTAAT
66 GAATTAATTAAT
51320609 TAAGTTATGTAAGTTAT
1 TAAGTTATGTAAGTTAT
51320626 GTATAATATT
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
77 87 1.00
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.47
Consensus pattern (77 bp):
TAAGTTATGTAAGTTATATAAGTTGTGTATTATGTAAGTTATGTAAGTCTGACAAGTTATGTTTA
GAATTAATTAAT
Found at i:51320623 original size:34 final size:38
Alignment explanation
Indices: 51320585--51320668 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 38
51320575 TAAGTCTGAC
51320585 AAGTTATGTTTAGA-ATTAAT-TAA-TTAAG-TTATGT
1 AAGTTATGTTTAGATATTAATGTAAGTTAAGATTATGT
* *
51320619 AAGTTATGTATA-ATATTAATGTAAGTTATGTATTATGT
1 AAGTTATGTTTAGATATTAATGTAAGTTAAG-ATTATGT
51320657 AAGTTAT-TTTAG
1 AAGTTATGTTTAG
51320669 TTATGTAAGT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
33 1 0.02
34 17 0.41
35 3 0.07
36 4 0.10
37 3 0.07
38 13 0.32
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (38 bp):
AAGTTATGTTTAGATATTAATGTAAGTTAAGATTATGT
Found at i:51320674 original size:18 final size:16
Alignment explanation
Indices: 51320400--51320698 Score: 93
Period size: 16 Copynumber: 18.9 Consensus size: 16
51320390 TATTAATAAG
51320400 TTATGTAAGTTAT-TA
1 TTATGTAAGTTATGTA
* *
51320415 -TAAGTAAGTTATGAAA
1 TTATGTAAGTTATG-TA
* * *
51320431 GTTATATATAAGTTGTATA
1 --T-TATGTAAGTTATGTA
* *
51320450 TTATGTAAGTTTTTTAA
1 TTATGTAAGTTATGT-A
* *
51320467 GTTATATAAGTTGTGTA
1 -TTATGTAAGTTATGTA
51320484 TTATGTAAGTTATGTAA
1 TTATGTAAGTTATGT-A
* *
51320501 GTCTGATAAGTTATGT-
1 TTATG-TAAGTTATGTA
51320517 TTA-GT-A-TTA---A
1 TTATGTAAGTTATGTA
51320527 TTAAT-TAAGTTATGTAA
1 TT-ATGTAAGTTATGT-A
* *
51320544 GTTGTGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
51320561 TTATGTAAGTTATGTAA
1 TTATGTAAGTTATGT-A
* * *
51320578 GTCTGACAAGTTATGT-
1 TTATG-TAAGTTATGTA
51320594 TTA-G-AA-TTA---A
1 TTATGTAAGTTATGTA
51320604 TTAAT-TAAGTTATGTAA
1 TT-ATGTAAGTTATGT-A
*
51320621 GTTATGT-A--TA-ATA
1 -TTATGTAAGTTATGTA
51320634 TTAATGTAAGTTATGTA
1 TT-ATGTAAGTTATGTA
*
51320651 TTATGTAAGTTATTTTA
1 TTATGTAAGTTA-TGTA
*
51320668 GTTATGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
*
51320685 TTATGTGAGTTATG
1 TTATGTAAGTTATG
51320699 CAATTTACGT
Statistics
Matches: 208, Mismatches: 35, Indels: 81
0.64 0.11 0.25
Matches are distributed among these distances:
10 4 0.02
11 3 0.01
12 11 0.05
13 14 0.07
14 14 0.07
15 4 0.02
16 64 0.31
17 28 0.13
18 56 0.27
19 1 0.00
20 9 0.04
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.47
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:51322090 original size:14 final size:14
Alignment explanation
Indices: 51322073--51322124 Score: 59
Period size: 14 Copynumber: 3.4 Consensus size: 14
51322063 TACTTGGCCA
51322073 TATATTCCAGCAAG
1 TATATTCCAGCAAG
51322087 TATATTCCAGCAACTGG
1 TATATTCCAGCAA---G
51322104 AATATATTCCAGCAAG
1 --TATATTCCAGCAAG
51322120 TATAT
1 TATAT
51322125 ATTCCAAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
14 18 0.55
16 1 0.03
17 1 0.03
19 13 0.39
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (14 bp):
TATATTCCAGCAAG
Found at i:51322862 original size:148 final size:148
Alignment explanation
Indices: 51322564--51322846 Score: 372
Period size: 148 Copynumber: 1.9 Consensus size: 148
51322554 AAGCTAAAAC
* * *
51322564 TTGTGGCGCTTAGAGCAAAAACGCCACAAATACCATGGACAAAATGACACCGCTATTAGATAACC
1 TTGTGGCGCTTAGAGCAAAAACGCCACAAATAACATGGACAAAACGACACCGCTATCAGATAACC
* * * *
51322629 ATAAACATTTTTACGGCGTTTTATCAAAAGCGCCACTAATAAAAATAGGAAACGGCGTCGTTACC
66 ATAAACATTTTTACGGCGCTTTAGCAAAAGCGCCACTAATAAAAAGAGGAAACGGCGCCGTTACC
51322694 TCAACCACTAATAAATAT
131 TCAACCACTAATAAATAT
* * * *
51322712 TTGTGGCGCTT-GCAGTAAAAACGCCACAAATAACATGGACAAAACGGCACTGTTATCAGATAAC
1 TTGTGGCGCTTAG-AGCAAAAACGCCACAAATAACATGGACAAAACGACACCGCTATCAGATAAC
* * ** * * *
51322776 CTTAAACATTTTTGCGGCGCTTTAGCTGAAGTGCCACTAATAAAAGGAGGAAACGGTC-CCGTTT
65 CATAAACATTTTTACGGCGCTTTAGCAAAAGCGCCACTAATAAAAAGAGGAAACGG-CGCCGTTA
51322840 CCTCAAC
129 CCTCAAC
51322847 TCGTAGTAAA
Statistics
Matches: 115, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
147 1 0.01
148 113 0.98
149 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (148 bp):
TTGTGGCGCTTAGAGCAAAAACGCCACAAATAACATGGACAAAACGACACCGCTATCAGATAACC
ATAAACATTTTTACGGCGCTTTAGCAAAAGCGCCACTAATAAAAAGAGGAAACGGCGCCGTTACC
TCAACCACTAATAAATAT
Found at i:51323333 original size:8 final size:8
Alignment explanation
Indices: 51323311--51323379 Score: 60
Period size: 8 Copynumber: 9.2 Consensus size: 8
51323301 TTTGGGATTT
51323311 AACCC-TA
1 AACCCTTA
51323318 AA-CCTTA
1 AACCCTTA
51323325 AACCCTTA
1 AACCCTTA
*
51323333 AACCCTAA
1 AACCCTTA
*
51323341 AATCC-TA
1 AACCCTTA
*
51323348 AGCCAC-TA
1 AACC-CTTA
51323356 AACCCTTA
1 AACCCTTA
51323364 AACCC-TA
1 AACCCTTA
51323371 AA-CCTTA
1 AACCCTTA
51323378 AA
1 AA
51323380 TCTTAAAACT
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
6 4 0.08
7 18 0.35
8 29 0.57
ACGTcount: A:0.43, C:0.35, G:0.01, T:0.20
Consensus pattern (8 bp):
AACCCTTA
Found at i:51323336 original size:15 final size:15
Alignment explanation
Indices: 51323311--51323386 Score: 59
Period size: 14 Copynumber: 5.1 Consensus size: 15
51323301 TTTGGGATTT
51323311 AACCC-TAAACCTTA
1 AACCCTTAAACCTTA
*
51323325 AACCCTTAAACCCTAA
1 AACCCTTAAA-CCTTA
* * *
51323341 AATCC-TAAGCCACTA
1 AACCCTTAAACC-TTA
*
51323356 AACCCTTAAACCCTA
1 AACCCTTAAACCTTA
*
51323371 AA-CCTTAAATCTTA
1 AACCCTTAAACCTTA
51323385 AA
1 AA
51323387 ACTAATAACC
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
14 19 0.39
15 17 0.35
16 13 0.27
ACGTcount: A:0.43, C:0.33, G:0.01, T:0.22
Consensus pattern (15 bp):
AACCCTTAAACCTTA
Found at i:51323386 original size:14 final size:15
Alignment explanation
Indices: 51323311--51323379 Score: 72
Period size: 15 Copynumber: 4.7 Consensus size: 15
51323301 TTTGGGATTT
*
51323311 AACCC-TAAACCTTA
1 AACCCTTAAACCCTA
51323325 AACCCTTAAACCCTAA
1 AACCCTTAAACCCT-A
* *
51323341 AATCC-TAAGCCACTA
1 AACCCTTAAACC-CTA
51323356 AACCCTTAAACCCTA
1 AACCCTTAAACCCTA
51323371 AA-CCTTAAA
1 AACCCTTAAA
51323380 TCTTAAAACT
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
14 12 0.26
15 22 0.48
16 12 0.26
ACGTcount: A:0.43, C:0.35, G:0.01, T:0.20
Consensus pattern (15 bp):
AACCCTTAAACCCTA
Found at i:51323466 original size:14 final size:13
Alignment explanation
Indices: 51323446--51323488 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
51323436 AATCATAATT
51323446 CCTAAACCCTAAA
1 CCTAAACCCTAAA
*
51323459 CCTAAAACTCTAAA
1 CCT-AAACCCTAAA
*
51323473 CTCTAAACCGTAAA
1 C-CTAAACCCTAAA
51323487 CC
1 CC
51323489 CCAAACCGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
13 4 0.16
14 19 0.76
15 2 0.08
ACGTcount: A:0.44, C:0.35, G:0.02, T:0.19
Consensus pattern (13 bp):
CCTAAACCCTAAA
Found at i:51323813 original size:14 final size:14
Alignment explanation
Indices: 51323786--51323834 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
51323776 ACTAAAGTGG
*
51323786 CCTAAACCCCAAAC
1 CCTAAACCCTAAAC
*
51323800 CCTAAACCTTAAAC
1 CCTAAACCCTAAAC
* *
51323814 CCCAAACTCCTAACC
1 CCTAAAC-CCTAAAC
51323829 CCTAAA
1 CCTAAA
51323835 TCTAAAACAC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 18 0.64
15 10 0.36
ACGTcount: A:0.41, C:0.45, G:0.00, T:0.14
Consensus pattern (14 bp):
CCTAAACCCTAAAC
Found at i:51324024 original size:20 final size:20
Alignment explanation
Indices: 51323996--51324042 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
51323986 ACTCTCAAAC
51323996 CCTAAATCGAAAACACTAAA
1 CCTAAATCGAAAACACTAAA
* * *
51324016 CCTATATCGTAAACCCTAAA
1 CCTAAATCGAAAACACTAAA
51324036 CCCTAAA
1 -CCTAAA
51324043 CTGTAATCCA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.47, C:0.30, G:0.04, T:0.19
Consensus pattern (20 bp):
CCTAAATCGAAAACACTAAA
Found at i:51324558 original size:115 final size:114
Alignment explanation
Indices: 51324206--51325072 Score: 767
Period size: 115 Copynumber: 7.6 Consensus size: 114
51324196 CGGTTTACCG
* * * **
51324206 TAAGCGCCACAAATTTTAGTATACATCAAGACCAAAACGTTGCGTTTTGGTTAAGGTATTTTATG
1 TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAAC-TTGCGTTTTGGTTAAGATATTTTGCG
* * * **
51324271 GCACTA--GCCACAAATCGCCGCTAATACTATGCTTTAGCGGCG-TTTCACCG
65 GCGCTATTG-C-CAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTC-CTA
* * *
51324321 TAAGCGCCAATAATTCAAGTATACATCCAA-ACCAAAACGTTGCGTTTTGGTTTAGATATTTTGC
1 TAAGCGCCACTAATTCTAGTATACAT-CAAGACCAAAAC-TTGCGTTTTGGTTAAGATATTTTGC
* *
51324385 GGCGC-A-T-CCAAAAAGCGCCGCTAATACTATCCTTTAGCCGCGTTTTCCAA
64 GGCGCTATTGCC--AAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCTA
** ** *
51324435 TAAGCGCCACTAACGCTAACATACCTCAAGACCAAAACTCTGCGTTTTGGTTAAGATATTTTGCG
1 TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACT-TGCGTTTTGGTTAAGATATTTTGCG
* * ** * *
51324500 GCGCTATTACCAAAGTGCCGCTAATACTATCCTTTAATGGCGTTTTACTG
65 GCGCTATTGCCAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCTA
* *
51324550 TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGTGTTTTGGTTAAGATATTTTGCG
1 TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAAC-TTGCGTTTTGGTTAAGATATTTTGCG
* ** * * *
51324615 GCGCCA--GCCACTATTCGCCGCTAATACTATGCTATAGCGGCGTTTTCGGTA
65 GCGCTATTGCCA--AAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTC-CTA
* * *
51324666 -AA-CGCCACTAATTCTAGTATA-AGCAAGACCAAAA-TGATGCATTTTGGTTCAGATATTTTGC
1 TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACT--TGCGTTTTGGTTAAGATATTTTGC
* * * * * **
51324727 AGCGCT-TT-CAAAAAGCCCCGCTAATACTAT-TTGTTTGTAGCGTTTTCCTA
64 GGCGCTATTGC-CAAAGCGCCGCTAATACTATCCT-TTAGCGGCGTTTTCCTA
* * *
51324777 TAAGCGCCACTAATTCTAGCATACCTCAAGACC-AAACTCTGCG-TTTGGTAAAGATATTTTGCG
1 TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACT-TGCGTTTTGGTTAAGATATTTTGCG
* * * *
51324840 GCGCTTTTGGCAAAGCGCCGCTAATACTATGCC-TTAACGGTGTTTTCCCT-
65 GCGCTATTGCCAAAGCGCCGCTAATACTAT-CCTTTAGCGGCGTTTT-CCTA
* *
51324890 TAAGCGCCACTAATTCTAGGATACATCAAGACCAAAACGATGCGTTTTGGTTAAGATATTTTTGC
1 TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAAC-TTGCGTTTTGGTTAAGATA-TTTTGC
* * * * *
51324955 GGCGC-ATTTCGCAAAACGCTGCTAATAC---GCTTTAGTGGCGTTTT-CTCA
64 GGCGCTATTGC-CAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCT-A
* * * **
51325003 TAATCGCCACTAATTCTAGTATACGTCAAGACGAAAACGTTGTATTTTGGTTAAGATATTTTGCG
1 TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAAC-TTGCGTTTTGGTTAAGATATTTTGCG
51325068 GCGCT
65 GCGCT
51325073 TTGTGGTAAA
Statistics
Matches: 612, Mismatches: 102, Indels: 78
0.77 0.13 0.10
Matches are distributed among these distances:
111 5 0.01
112 62 0.10
113 190 0.31
114 124 0.20
115 198 0.32
116 31 0.05
117 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (114 bp):
TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACTTGCGTTTTGGTTAAGATATTTTGCGG
CGCTATTGCCAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCTA
Found at i:51324609 original size:229 final size:229
Alignment explanation
Indices: 51324206--51325071 Score: 859
Period size: 229 Copynumber: 3.8 Consensus size: 229
51324196 CGGTTTACCG
* * * * **
51324206 TAAGCGCCACAAATTTTAGTATACATCAAGACCAAAACGT-TGCGTTTTGGTTAAGGTATTTTAT
1 TAAGCGCCACTAATTCTAGCATACATCAAGACCAAAAC-TATGCGTTTTGGTTAAGATATTTTGC
* ** * * * ** *
51324270 GGCACTAGCCACAAATCGCCGCTAATACTATGCTTTAGCGGCGTTTCACCGTAAGCGCCAATAAT
65 GGCGCTATTCACAAAACGCCGCTAATACTATGCTTTAGTGGCGTTTTACTATAAGCGCCACTAAT
* * * *
51324335 TCAAGTATACATCCAA-ACCAAAACGTTGCGTTTTGGTTTAGATATTTTGCGGCGCATCCAAAAA
130 TCTAGTATACAT-CAAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCATCCACAAA
*
51324399 GCGCCGCTAATACTATCCTTTAGCCGCGTTTTCCAA
194 GCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCAA
** * * *
51324435 TAAGCGCCACTAACGCTAACATACCTCAAGACCAAAACTCTGCGTTTTGGTTAAGATATTTTGCG
1 TAAGCGCCACTAATTCTAGCATACATCAAGACCAAAACTATGCGTTTTGGTTAAGATATTTTGCG
** * * *
51324500 GCGCTATT-ACCAAAGTGCCGCTAATACTATCCTTTAATGGCGTTTTACTGTAAGCGCCACTAAT
66 GCGCTATTCA-CAAAACGCCGCTAATACTATGCTTTAGTGGCGTTTTACTATAAGCGCCACTAAT
* * * *
51324564 TCTAGTATACATCAAGACCAAAACGCTGTGTTTTGGTTAAGATATTTTGCGGCGCCAGCCACTAT
130 TCTAGTATACATCAAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCG-CATCCACAAA
* * * **
51324629 TCGCCGCTAATACTATGCTATAGCGGCGTTTT-CGG
194 GCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCAA
* * * * *
51324664 TAAACGCCACTAATTCTAGTATA-AGCAAGACCAAAA-TGATGCATTTTGGTTCAGATATTTTGC
1 TAAGCGCCACTAATTCTAGCATACATCAAGACCAAAACT-ATGCGTTTTGGTTAAGATATTTTGC
* * * *
51324727 AGCGCT-TTCA-AAAAGCCCCGCTAATACTATTTG-TTT-GTAGCGTTTTCCTATAAGCGCCACT
65 GGCGCTATTCACAAAA-CGCCGCTAATACTA--TGCTTTAGTGGCGTTTTACTATAAGCGCCACT
* * * * * ***
51324788 AATTCTAGCATACCTCAAGACC-AAACTCTGCG-TTTGGTAAAGATATTTTGCGGCGCTTTTGGC
127 AATTCTAGTATACATCAAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGC-ATCCAC
* * **
51324851 AAAGCGCCGCTAATACTATGCC-TTAACGGTGTTTTCCCT
191 AAAGCGCCGCTAATACTAT-CCTTTAGCGGCGTTTTCCAA
* *
51324890 TAAGCGCCACTAATTCTAGGATACATCAAGACCAAAACGATGCGTTTTGGTTAAGATATTTTTGC
1 TAAGCGCCACTAATTCTAGCATACATCAAGACCAAAACTATGCGTTTTGGTTAAGATA-TTTTGC
* * *
51324955 GGCGC-ATTTCGCAAAACGCTGCTAATAC---GCTTTAGTGGCGTTTT-CTCATAATCGCCACTA
65 GGCGCTA-TTCACAAAACGCCGCTAATACTATGCTTTAGTGGCGTTTTACT-ATAAGCGCCACTA
* * * **
51325015 ATTCTAGTATACGTCAAGACGAAAACGTTGTATTTTGGTTAAGATATTTTGCGGCGC
128 ATTCTAGTATACATCAAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGC
51325072 TTTGTGGTAA
Statistics
Matches: 521, Mismatches: 93, Indels: 47
0.79 0.14 0.07
Matches are distributed among these distances:
224 2 0.00
225 54 0.10
226 73 0.14
227 91 0.17
228 80 0.15
229 183 0.35
230 38 0.07
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (229 bp):
TAAGCGCCACTAATTCTAGCATACATCAAGACCAAAACTATGCGTTTTGGTTAAGATATTTTGCG
GCGCTATTCACAAAACGCCGCTAATACTATGCTTTAGTGGCGTTTTACTATAAGCGCCACTAATT
CTAGTATACATCAAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCATCCACAAAGC
GCCGCTAATACTATCCTTTAGCGGCGTTTTCCAA
Found at i:51334670 original size:18 final size:17
Alignment explanation
Indices: 51334644--51334679 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
51334634 TTTGGTTATA
51334644 TTTAATTTTCGATATGTT
1 TTTAATTTT-GATATGTT
*
51334662 TTTATTTTTGATATGTT
1 TTTAATTTTGATATGTT
51334679 T
1 T
51334680 CATTTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.03, G:0.11, T:0.67
Consensus pattern (17 bp):
TTTAATTTTGATATGTT
Found at i:51334839 original size:47 final size:47
Alignment explanation
Indices: 51334770--51334859 Score: 162
Period size: 47 Copynumber: 1.9 Consensus size: 47
51334760 TTTGGTCTTC
51334770 AAACAATGTTTTATATTACTTATATTGTCTGATTAAAAATTATAATT
1 AAACAATGTTTTATATTACTTATATTGTCTGATTAAAAATTATAATT
* *
51334817 AAACAATGTTTTATATTACTTATATTGTTTGATTAAAAGTTAT
1 AAACAATGTTTTATATTACTTATATTGTCTGATTAAAAATTAT
51334860 CTCAACAAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.48
Consensus pattern (47 bp):
AAACAATGTTTTATATTACTTATATTGTCTGATTAAAAATTATAATT
Found at i:51335279 original size:17 final size:18
Alignment explanation
Indices: 51335254--51335299 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
51335244 TATAACAATA
*
51335254 ATTATATTA-AGAATTTT
1 ATTAAATTATAGAATTTT
* *
51335271 ATTAAATTATATATTTTT
1 ATTAAATTATAGAATTTT
51335289 ATTAAATTATA
1 ATTAAATTATA
51335300 TTTAATAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
ATTAAATTATAGAATTTT
Found at i:51335552 original size:16 final size:16
Alignment explanation
Indices: 51335533--51335572 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
51335523 TTAAATTACT
*
51335533 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
51335549 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
51335565 ATTACAGC
1 ATTACAGC
51335573 GAATCAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.07, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:51335892 original size:40 final size:39
Alignment explanation
Indices: 51335814--51335925 Score: 118
Period size: 40 Copynumber: 2.8 Consensus size: 39
51335804 AAGAGAGAGA
* *
51335814 GAAAGTTATCCTAATTTA-ATTTTAAATCATTTTTAAAAT
1 GAAAGTTATCC-AATTTATTTTTTAAATCATTTTAAAAAT
*
51335853 GAAAGTTATTCCAATTTATTTTTTAAATTATTTTAAAAAT
1 GAAAGTTA-TCCAATTTATTTTTTAAATCATTTTAAAAAT
* * * * *
51335893 AAAAATGATCTCAATTTATTTTTAAAATGATTT
1 GAAAGTTATC-CAATTTATTTTTTAAATCATTT
51335926 GTTTTTATAT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
39 16 0.26
40 46 0.74
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.47
Consensus pattern (39 bp):
GAAAGTTATCCAATTTATTTTTTAAATCATTTTAAAAAT
Found at i:51337193 original size:21 final size:21
Alignment explanation
Indices: 51337153--51337193 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
51337143 TTCTAATTTT
*
51337153 TTAAAATTTATTAAAAATAAA
1 TTAAAATTTATGAAAAATAAA
* *
51337174 TTAAAATTTCTGAAATATAA
1 TTAAAATTTATGAAAAATAA
51337194 TTTTTTTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (21 bp):
TTAAAATTTATGAAAAATAAA
Found at i:51337552 original size:29 final size:30
Alignment explanation
Indices: 51337510--51337569 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
51337500 ATAATTTACA
*
51337510 AAAATTGAT-TTAAATCAAAATTGTATATAT
1 AAAATTGATATAAAATCAAAATT-TATATAT
*
51337540 AAAATT-ATATAAAATCAAAATTTATCTAT
1 AAAATTGATATAAAATCAAAATTTATATAT
51337569 A
1 A
51337570 CACTTACAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.38
Consensus pattern (30 bp):
AAAATTGATATAAAATCAAAATTTATATAT
Found at i:51343007 original size:20 final size:19
Alignment explanation
Indices: 51342964--51343012 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
51342954 TAGTAATATT
51342964 TTAATAATAATATTTAATAC
1 TTAA-AATAATATTTAATAC
*
51342984 -TAAAATATTATATTAATAC
1 TTAAAATAATAT-TTAATAC
51343003 TTAAAATAAT
1 TTAAAATAAT
51343013 TGTCTTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 7 0.28
19 10 0.40
20 8 0.32
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (19 bp):
TTAAAATAATATTTAATAC
Found at i:51343183 original size:29 final size:29
Alignment explanation
Indices: 51343150--51343211 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
51343140 TAAACACCAT
*
51343150 AGGTTACGAAAACATAAATAAGAGAATTA
1 AGGTTACAAAAACATAAATAAGAGAATTA
51343179 AGGTTACAAAAACATAAATAAGAGAATTA
1 AGGTTACAAAAACATAAATAAGAGAATTA
51343208 AGGT
1 AGGT
51343212 ATCTTATAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.55, C:0.06, G:0.18, T:0.21
Consensus pattern (29 bp):
AGGTTACAAAAACATAAATAAGAGAATTA
Found at i:51344110 original size:17 final size:18
Alignment explanation
Indices: 51344090--51344130 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
51344080 TTGAGCGAGC
51344090 CCTATATTA-TATGCAAG
1 CCTATATTAGTATGCAAG
*
51344107 CCTAT-TTAGTGTGCAAG
1 CCTATATTAGTATGCAAG
51344124 CCTATAT
1 CCTATAT
51344131 GTATGCGAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 3 0.14
17 17 0.81
18 1 0.05
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.37
Consensus pattern (18 bp):
CCTATATTAGTATGCAAG
Found at i:51344325 original size:27 final size:26
Alignment explanation
Indices: 51344282--51344340 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
51344272 TCTCTTGTGC
* * * *
51344282 GAACCCCTATCGCGAACTGCCTTTGT
1 GAACTCCTATCACGAACTACCTATGT
51344308 GAACTCCTATCACTGAACTACCTATGT
1 GAACTCCTATCAC-GAACTACCTATGT
51344335 GAACTC
1 GAACTC
51344341 TCCTATGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 11 0.39
27 17 0.61
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.27
Consensus pattern (26 bp):
GAACTCCTATCACGAACTACCTATGT
Found at i:51345872 original size:30 final size:30
Alignment explanation
Indices: 51345820--51345877 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
51345810 TCTGAGCTTT
51345820 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
* * * *
51345850 GGGGCAAAATTGTAATTTTGCAAAAGTT
1 GGGGAAAAAGTGTAAATATGCAAAAGTT
51345878 CGAGTCAAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.05, G:0.26, T:0.28
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTTA
Found at i:51346311 original size:56 final size:50
Alignment explanation
Indices: 51346268--51346407 Score: 154
Period size: 50 Copynumber: 2.8 Consensus size: 50
51346258 TATTGAGGTT
**
51346268 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
* * * * * *
51346318 ATGAGATGTCCCCCGTAAGACCATGTCTGGGACATGACATGGGCACTGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
** * * * *
51346368 ATGAGAACTCTCACATAAGACCATATCTGGGATATGGCAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCAT
51346408 GTAACACCCA
Statistics
Matches: 74, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 74 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
Found at i:51350106 original size:23 final size:23
Alignment explanation
Indices: 51350080--51350126 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
51350070 CAAAATTAGT
* *
51350080 ATTAAAATAAATATAATATAAAA
1 ATTAAAATAAATACAACATAAAA
**
51350103 ATTAATTTAAATACAACATAAAA
1 ATTAAAATAAATACAACATAAAA
51350126 A
1 A
51350127 AATAAAACCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (23 bp):
ATTAAAATAAATACAACATAAAA
Found at i:51350159 original size:2 final size:2
Alignment explanation
Indices: 51350152--51350178 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
51350142 GTAATGTAAA
51350152 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
51350179 AATTGCATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:51351925 original size:18 final size:17
Alignment explanation
Indices: 51351897--51351933 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
51351887 ATTATTAAGA
*
51351897 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
51351914 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
51351932 AT
1 AT
51351934 AATAATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:51352186 original size:16 final size:16
Alignment explanation
Indices: 51352165--51352234 Score: 95
Period size: 16 Copynumber: 4.4 Consensus size: 16
51352155 TTGATTTGCT
*
51352165 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
* *
51352181 ATTACACTTCTATTCC
1 ATTACACCTCTAATCC
51352197 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
51352213 AATACACCTCTAATCC
1 ATTACACCTCTAATCC
*
51352229 AATACA
1 ATTACA
51352235 GCAAACCAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.33, C:0.34, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:51353131 original size:24 final size:24
Alignment explanation
Indices: 51353104--51353150 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
51353094 GTCATACAAT
*
51353104 TCATAGACAAAACAGTCATTTAAA
1 TCATAGACAAAACAATCATTTAAA
* *
51353128 TCATGGACAAATCAATCATTTAA
1 TCATAGACAAAACAATCATTTAA
51353151 CCTTGAGGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.47, C:0.17, G:0.09, T:0.28
Consensus pattern (24 bp):
TCATAGACAAAACAATCATTTAAA
Found at i:51353223 original size:27 final size:26
Alignment explanation
Indices: 51353191--51353256 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
51353181 TACGACATTA
*
51353191 CGATCATTTTACCTTATAGGGGTAGCT
1 CGATCATTTTACCTT-CAGGGGTAGCT
*
51353218 CGATCATTTTACCCTTCAGGGGTATCT
1 CGATCATTTTA-CCTTCAGGGGTAGCT
51353245 C-AGTCATTTTAC
1 CGA-TCATTTTAC
51353257 ACGGACACTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 2 0.06
27 29 0.83
28 4 0.11
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (26 bp):
CGATCATTTTACCTTCAGGGGTAGCT
Found at i:51356133 original size:25 final size:26
Alignment explanation
Indices: 51356077--51356133 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 26
51356067 GGTTACCAAT
* *
51356077 TTCAGCTTGTATGAGTTTACTGATAC
1 TTCAGCTTGCATGAGCTTACTGATAC
*
51356103 TT-AGCTTGCATGAGCTTACTGTTA-
1 TTCAGCTTGCATGAGCTTACTGATAC
51356127 TTCAGCT
1 TTCAGCT
51356134 CGGAGGAGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 2 0.07
25 23 0.85
26 2 0.07
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (26 bp):
TTCAGCTTGCATGAGCTTACTGATAC
Found at i:51357030 original size:34 final size:35
Alignment explanation
Indices: 51356992--51357059 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 35
51356982 AATGAGGTTA
51356992 GTTTTTGAATGGTTTGTGTTGG-TTTTTTTAGTGC
1 GTTTTTGAATGGTTTGTGTTGGTTTTTTTTAGTGC
51357026 GTTTTTGAATGGTTTGTGTTGGTTTTTTTTAGTG
1 GTTTTTGAATGGTTTGTGTTGGTTTTTTTTAGTG
51357060 AACAAATTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 22 0.67
35 11 0.33
ACGTcount: A:0.09, C:0.01, G:0.29, T:0.60
Consensus pattern (35 bp):
GTTTTTGAATGGTTTGTGTTGGTTTTTTTTAGTGC
Found at i:51358239 original size:137 final size:138
Alignment explanation
Indices: 51358015--51358348 Score: 485
Period size: 137 Copynumber: 2.4 Consensus size: 138
51358005 TAGAAAAATG
* * *
51358015 AATTATATTCTTTCCAAAAGAATATTAATTT-C-TGTCTTTTACATTTTGACCTAAGTTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * * * *
51358078 TATAACTGTTTATAGTAAGAAATTCTATAAAATATATACAATTAATATTTTGTATGAAT-CAATT
66 TATAACTATTTATAGTAAGAAATTCGATAAAATATATACAATTAATATTGTGTATGAATAAAACT
51358142 CATATATT
131 CATATATT
* *
51358150 AATTATATTCTTTCAAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACGGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * *
51358215 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTGTGTATGAATAAAACT
66 TATAACTATTTATAGTAAGAAATTCGATAAAATATATACAATTAATATTGTGTATGAATAAAACT
*
51358280 GATATATT
131 CATATATT
* * * *
51358288 AATTATATTATTTCCAAAAGAATATTATTTTCCATGCCTTTTATATTTTGACCGAATTTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAA
51358349 AATCACAAAA
Statistics
Matches: 176, Mismatches: 20, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
135 30 0.17
136 1 0.01
137 80 0.45
138 65 0.37
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAACTATTTATAGTAAGAAATTCGATAAAATATATACAATTAATATTGTGTATGAATAAAACT
CATATATT
Found at i:51361468 original size:8 final size:8
Alignment explanation
Indices: 51361447--51361475 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
51361437 CACTTTTTTA
51361447 ATCATCCC
1 ATCATCCC
51361455 -TCATCCC
1 ATCATCCC
51361462 ATCATCCC
1 ATCATCCC
51361470 ATCATC
1 ATCATC
51361476 TCTCACTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.24, C:0.48, G:0.00, T:0.28
Consensus pattern (8 bp):
ATCATCCC
Found at i:51367458 original size:23 final size:22
Alignment explanation
Indices: 51367432--51367500 Score: 54
Period size: 23 Copynumber: 3.1 Consensus size: 22
51367422 AATTTCAAAG
51367432 AAAGGAATTGAAGTCGACAAAAC
1 AAAGGAATTGAAGT-GACAAAAC
* **
51367455 AAAGGCATAT-AA-TTTCAAAA-
1 AAAGGAAT-TGAAGTGACAAAAC
*
51367475 AAAGGAATTGAAGTTGACAAAGC
1 AAAGGAATTGAAG-TGACAAAAC
51367498 AAA
1 AAA
51367501 TGTATATATA
Statistics
Matches: 34, Mismatches: 7, Indels: 10
0.67 0.14 0.20
Matches are distributed among these distances:
19 1 0.03
20 9 0.26
21 5 0.15
22 6 0.18
23 12 0.35
24 1 0.03
ACGTcount: A:0.54, C:0.10, G:0.19, T:0.17
Consensus pattern (22 bp):
AAAGGAATTGAAGTGACAAAAC
Found at i:51367508 original size:43 final size:43
Alignment explanation
Indices: 51367417--51367500 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
51367407 TGTCTTAGGC
* *
51367417 CATAGAATTTCAAAGAAAGGAATTGAAGTCGACAAAACAAAGG
1 CATATAATTTCAAAAAAAGGAATTGAAGTCGACAAAACAAAGG
* *
51367460 CATATAATTTCAAAAAAAGGAATTGAAGTTGACAAAGCAAA
1 CATATAATTTCAAAAAAAGGAATTGAAGTCGACAAAACAAA
51367501 TGTATATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.52, C:0.11, G:0.18, T:0.19
Consensus pattern (43 bp):
CATATAATTTCAAAAAAAGGAATTGAAGTCGACAAAACAAAGG
Found at i:51371496 original size:23 final size:25
Alignment explanation
Indices: 51371440--51371496 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 25
51371430 CTTGTTATTT
**
51371440 ATTTAATTTTCTTTAGGTCTTTAGGA
1 ATTTAA-TTTCTTTAGGTAATTAGGA
51371466 ATTT-ATTTCTTTA-GTAATTAGG-
1 ATTTAATTTCTTTAGGTAATTAGGA
51371488 ATTTAATTT
1 ATTTAATTT
51371497 TTGTAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 4 0.14
23 11 0.39
24 8 0.29
25 1 0.04
26 4 0.14
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.56
Consensus pattern (25 bp):
ATTTAATTTCTTTAGGTAATTAGGA
Found at i:51373656 original size:19 final size:19
Alignment explanation
Indices: 51373634--51373671 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
51373624 TCAATCATCC
51373634 CTCATCCCATCATT-TCTCA
1 CTCAT-CCATCATTCTCTCA
*
51373653 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
51373672 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.21, C:0.39, G:0.00, T:0.39
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:51375165 original size:64 final size:65
Alignment explanation
Indices: 51375026--51375172 Score: 163
Period size: 64 Copynumber: 2.3 Consensus size: 65
51375016 TTATGGAGGT
** ***
51375026 GTGGATGAGAATGGGGTTTTAGTATTGAATATTGTTAAGTAAATCATGGCTTTGCGAAGGTTCAA
1 GTGGATGAGAATGGGGTTTTAGTATCAAATACCATTAAGTAAATCATGGCTTTGCGAAGGTTCAA
* * ** * * **
51375091 G-GGATAAGAATGGGGTTTTAGTATCAAATACCATTAAGTAAATTATTTCTTTGTGATGGTT-TG
1 GTGGATGAGAATGGGGTTTTAGTATCAAATACCATTAAGTAAATCATGGCTTTGCGAAGGTTCAA
51375154 GTGGATGAGAATGGGGTTT
1 GTGGATGAGAATGGGGTTT
51375173 CAATATAGAA
Statistics
Matches: 67, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
63 1 0.01
64 65 0.97
65 1 0.01
ACGTcount: A:0.29, C:0.05, G:0.29, T:0.37
Consensus pattern (65 bp):
GTGGATGAGAATGGGGTTTTAGTATCAAATACCATTAAGTAAATCATGGCTTTGCGAAGGTTCAA
Found at i:51395585 original size:5 final size:5
Alignment explanation
Indices: 51395575--51395601 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
51395565 CAAAGCTTAC
51395575 TTGTT TTGTT TTGTT TTGTT TTGTT TT
1 TTGTT TTGTT TTGTT TTGTT TTGTT TT
51395602 CTGTAGTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (5 bp):
TTGTT
Found at i:51396866 original size:27 final size:27
Alignment explanation
Indices: 51396826--51396913 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
51396816 TAAAATAGGA
* * *
51396826 AAAATGAATGAAATACCCTCGATGGGT
1 AAAATGACTAAAATACCCTCAATGGGT
51396853 AAAATGACTAAAATACCCTCAATGGGT
1 AAAATGACTAAAATACCCTCAATGGGT
* * * *
51396880 AAAATGACCATAACACCCCTCTA-GGGT
1 AAAATGACTAAAATA-CCCTCAATGGGT
51396907 AAAATGA
1 AAAATGA
51396914 TCGTAATACC
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
27 47 0.89
28 6 0.11
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.20
Consensus pattern (27 bp):
AAAATGACTAAAATACCCTCAATGGGT
Found at i:51396907 original size:54 final size:53
Alignment explanation
Indices: 51396849--51397005 Score: 147
Period size: 54 Copynumber: 2.9 Consensus size: 53
51396839 TACCCTCGAT
51396849 GGGTAAAATGAC-TAAAATACCCTCAAT-GGGTAAAATGACCATAACACCCCTCTA
1 GGGTAAAATGACGT--AATACCC-CAATAGGGTAAAATGACCATAACACCCCTCTA
** * ** *
51396903 GGGTAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTA
1 GGGTAAAATGA-CGTAATACCCCAATAGGGTAAAATGACCATAACACCCCTCTA
* * ** * *
51396957 GGGTAAAATGACCCTAATGCCCCTGTAGGGTAAAATAACCATAATACCC
1 GGGTAAAATGA-CGTAATACCCCAATAGGGTAAAATGACCATAACACCC
51397006 TCGACGCCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
53 2 0.02
54 84 0.95
55 1 0.01
56 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.22
Consensus pattern (53 bp):
GGGTAAAATGACGTAATACCCCAATAGGGTAAAATGACCATAACACCCCTCTA
Found at i:51396924 original size:27 final size:27
Alignment explanation
Indices: 51396876--51397005 Score: 179
Period size: 27 Copynumber: 4.8 Consensus size: 27
51396866 TACCCTCAAT
* * *
51396876 GGGTAAAATGACCATAACACCCCTCTA
1 GGGTAAAATGACCGTAATACCCCTGTA
*
51396903 GGGTAAAATGATCGTAATACCCCTGTA
1 GGGTAAAATGACCGTAATACCCCTGTA
*
51396930 GGGTAAAATGACCGTAATGCCCCTGTA
1 GGGTAAAATGACCGTAATACCCCTGTA
* *
51396957 GGGTAAAATGACCCTAATGCCCCTGTA
1 GGGTAAAATGACCGTAATACCCCTGTA
* *
51396984 GGGTAAAATAACCATAATACCC
1 GGGTAAAATGACCGTAATACCC
51397006 TCGACGCCAA
Statistics
Matches: 93, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.22
Consensus pattern (27 bp):
GGGTAAAATGACCGTAATACCCCTGTA
Found at i:51397073 original size:24 final size:23
Alignment explanation
Indices: 51397025--51397096 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 23
51397015 AAAGATTGAC
* * *
51397025 TTGTCTGTGGTTAAATGACTAAT
1 TTGTCTGTGTTTGAATGACTGAT
51397048 TTGTCTGTGTTTGATATGACTGAT
1 TTGTCTGTGTTTGA-ATGACTGAT
51397072 TTGTCTGTGATTTGAATGACTGAT
1 TTGTCTGTG-TTTGAATGACTGAT
51397096 T
1 T
51397097 CTGAGCATGG
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
23 12 0.27
24 27 0.61
25 5 0.11
ACGTcount: A:0.21, C:0.08, G:0.24, T:0.47
Consensus pattern (23 bp):
TTGTCTGTGTTTGAATGACTGAT
Found at i:51397208 original size:27 final size:27
Alignment explanation
Indices: 51397159--51397223 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
51397149 TATGGAGGAA
51397159 ATACTA-TACTGGTGGCTCTGCCACA-
1 ATACTATTACTGGTGGCTCTGCCACAT
* *
51397184 ATCACTGTTACTGGTGTCT-TAGCCACAT
1 AT-ACTATTACTGGTGGCTCT-GCCACAT
51397212 ATACTATTACTG
1 ATACTATTACTG
51397224 ACAGCTTTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 2 0.06
26 4 0.12
27 25 0.76
28 2 0.06
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (27 bp):
ATACTATTACTGGTGGCTCTGCCACAT
Found at i:51397243 original size:26 final size:26
Alignment explanation
Indices: 51397212--51397271 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
51397202 TTAGCCACAT
*
51397212 ATACTATTACTGACAGCTTTGTTGGG
1 ATACTACTACTGACAGCTTTGTTGGG
* * *
51397238 ATACTACTGCTGGCAGCTTTGTTGCG
1 ATACTACTACTGACAGCTTTGTTGGG
*
51397264 ATGCTACT
1 ATACTACT
51397272 GATGGCTTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (26 bp):
ATACTACTACTGACAGCTTTGTTGGG
Found at i:51397272 original size:26 final size:26
Alignment explanation
Indices: 51397225--51397277 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
51397215 CTATTACTGA
* *
51397225 CAGCTTTGTTGGGATACTACTGCTGG
1 CAGCTTTGTTGCGATACTACTGATGG
*
51397251 CAGCTTTGTTGCGATGCTACTGATGG
1 CAGCTTTGTTGCGATACTACTGATGG
51397277 C
1 C
51397278 TTTGTCCCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.30, T:0.34
Consensus pattern (26 bp):
CAGCTTTGTTGCGATACTACTGATGG
Found at i:51397323 original size:32 final size:32
Alignment explanation
Indices: 51397268--51397470 Score: 230
Period size: 32 Copynumber: 6.4 Consensus size: 32
51397258 GTTGCGATGC
* *
51397268 TACTGATGGCTTTGTCCCCATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * * * *
51397300 TATTGATGG-TTGTGTGCCAATCATATCACTGC
1 TACTGATGGCTT-TGTGCCGATCATATTACCGT
*
51397332 TACTAATGGCTTTGTGCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
*
51397364 TACTGATGGCTTTGTACCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * * * *
51397396 TACTGATGGCTGTGTGCCGGTCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* *
51397428 TACTGATGGCTTTGTGCCAATCATATTACTG-
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
*
51397459 TACTTATGGCTT
1 TACTGATGGCTT
51397471 GTAGCCATTC
Statistics
Matches: 144, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
31 13 0.09
32 129 0.90
33 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTACCGT
Done.