Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 169 of 187
Found at i:51397371 original size:64 final size:64
Alignment explanation
Indices: 51397265--51397470 Score: 254
Period size: 64 Copynumber: 3.2 Consensus size: 64
51397255 TTTGTTGCGA
* * * *
51397265 TGCTACTGATGGCTTTGTCCCCATCATATTACCGTTATTGATGG-TTGTGTGCCAATCATATCAC
1 TGCTACTGATGGCTTTGTGCCGATCATATTACCGTTACTGATGGCTT-TGTGCCAATCATATTAC
* * *
51397329 TGCTACTAATGGCTTTGTGCCGATCATATTACCGTTACTGATGGCTTTGTACCGATCATATTAC
1 TGCTACTGATGGCTTTGTGCCGATCATATTACCGTTACTGATGGCTTTGTGCCAATCATATTAC
* * * * * * *
51397393 CGTTACTGATGGCTGTGTGCCGGTCATATCACTGCTACTGATGGCTTTGTGCCAATCATATTAC
1 TGCTACTGATGGCTTTGTGCCGATCATATTACCGTTACTGATGGCTTTGTGCCAATCATATTAC
*
51397457 TG-TACTTATGGCTT
1 TGCTACTGATGGCTT
51397471 GTAGCCATTC
Statistics
Matches: 121, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
63 10 0.08
64 109 0.90
65 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (64 bp):
TGCTACTGATGGCTTTGTGCCGATCATATTACCGTTACTGATGGCTTTGTGCCAATCATATTAC
Found at i:51397437 original size:96 final size:95
Alignment explanation
Indices: 51397268--51397478 Score: 307
Period size: 96 Copynumber: 2.2 Consensus size: 95
51397258 GTTGCGATGC
* * *
51397268 TACTGATGGCTTTGTCCCCATCATATTACCGTTATTGATGGTTGTGTGCCAATCATATCACTGCT
1 TACTGATGGCTTTGTACCCATCATATTACCGTTACTGATGGCTGTGTGCCAATCATATCACTGCT
*
51397333 ACTAATGGCTTTGTGCCGATCATATTACCG
66 ACTAATGGCTTTGTGCCAATCATATTACCG
* **
51397363 TTACTGATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTGTGTGCCGGTCATATCACTGC
1 -TACTGATGGCTTTGTACCCATCATATTACCGTTACTGATGGCTGTGTGCCAATCATATCACTGC
* *
51397428 TACTGATGGCTTTGTGCCAATCATATTACTG
65 TACTAATGGCTTTGTGCCAATCATATTACCG
* *
51397459 TACTTATGGC-TTGTAGCCAT
1 TACTGATGGCTTTGTACCCAT
51397479 TCTGTTNNNN
Statistics
Matches: 103, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
94 8 0.08
95 9 0.09
96 86 0.83
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (95 bp):
TACTGATGGCTTTGTACCCATCATATTACCGTTACTGATGGCTGTGTGCCAATCATATCACTGCT
ACTAATGGCTTTGTGCCAATCATATTACCG
Found at i:51407886 original size:39 final size:40
Alignment explanation
Indices: 51407841--51407928 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
51407831 CGGGGTTTAG
* * *
51407841 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
51407880 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
51407920 CCGGATATA
1 CCGGATATA
51407929 GTCGCTAGCA
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
39 15 0.38
40 24 0.62
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:51407999 original size:41 final size:40
Alignment explanation
Indices: 51407864--51408008 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
51407854 CTCGCACAAG
* * * * *
51407864 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
51407904 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* ** * *
51407944 GCCTT-TGGATCTTAGTTCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
51407985 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
51408009 CATTCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.65
41 25 0.28
42 3 0.03
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:51409407 original size:63 final size:63
Alignment explanation
Indices: 51409340--51409466 Score: 245
Period size: 63 Copynumber: 2.0 Consensus size: 63
51409330 TTTCTTATTA
*
51409340 GTTTATTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTTTT
1 GTTTATTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGATTT
51409403 GTTTATTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGATTT
1 GTTTATTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGATTT
51409466 G
1 G
51409467 CCCATCATCC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.10, T:0.48
Consensus pattern (63 bp):
GTTTATTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGATTT
Found at i:51412581 original size:18 final size:18
Alignment explanation
Indices: 51412557--51412604 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
51412547 GTGTTTTATC
* *
51412557 AAAAACCTTGTTTTCATT
1 AAAAACCTTGTTTACAAT
* *
51412575 GAAAACCCTTCTTTACAAT
1 -AAAAACCTTGTTTACAAT
51412594 AAAAACCTTGT
1 AAAAACCTTGT
51412605 GTAAAATCCC
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (18 bp):
AAAAACCTTGTTTACAAT
Found at i:51412775 original size:39 final size:39
Alignment explanation
Indices: 51412721--51412801 Score: 135
Period size: 39 Copynumber: 2.1 Consensus size: 39
51412711 CAGAAGCTTT
51412721 ATTTAAAACAGATGATCTATGAAAACACGTCACTTAAAA
1 ATTTAAAACAGATGATCTATGAAAACACGTCACTTAAAA
** *
51412760 ATTTAAAACAGATGATCTATGAAAACTTGTCATTTAAAA
1 ATTTAAAACAGATGATCTATGAAAACACGTCACTTAAAA
51412799 ATT
1 ATT
51412802 AAGTTGCGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (39 bp):
ATTTAAAACAGATGATCTATGAAAACACGTCACTTAAAA
Found at i:51417860 original size:27 final size:27
Alignment explanation
Indices: 51417802--51417892 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
51417792 ACCCACACTT
* * *
51417802 ATTCATTTGGCCTATTTAGGCCCAATCTC
1 ATTCATATGGCCTA--TCGGCCCAATCAC
51417831 ATTCATATGGCCTATCGGCCCAATCAC
1 ATTCATATGGCCTATCGGCCCAATCAC
* ** *
51417858 ATTGATATGGCCCGTCAAGCCCAATCAC
1 ATTCATATGGCCTATC-GGCCCAATCAC
51417886 ATTCATA
1 ATTCATA
51417893 GTCATGTAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 24 0.45
28 16 0.30
29 13 0.25
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (27 bp):
ATTCATATGGCCTATCGGCCCAATCAC
Found at i:51423935 original size:34 final size:35
Alignment explanation
Indices: 51423859--51423935 Score: 106
Period size: 34 Copynumber: 2.3 Consensus size: 35
51423849 GATTGCATTT
51423859 CTGTTACT-ATTACTGTAATGGGCTAAGGCCCATA
1 CTGTTACTGATTACTGTAATGGGCTAAGGCCCATA
* *
51423893 CTGCTACTGA-TACTGTATTGGGCTAAGGCCC-TAA
1 CTGTTACTGATTACTGTAATGGGCTAAGGCCCAT-A
51423927 CTGTTACTG
1 CTGTTACTG
51423936 GATTGTTACT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 1 0.03
34 36 0.95
35 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (35 bp):
CTGTTACTGATTACTGTAATGGGCTAAGGCCCATA
Found at i:51434788 original size:47 final size:47
Alignment explanation
Indices: 51434711--51435219 Score: 748
Period size: 47 Copynumber: 10.6 Consensus size: 47
51434701 TTAAACCCAT
51434711 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51434760 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51434807 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51434854 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51434901 ATGTGAAAGTGTATATATGTGATAAGGATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTG----TA--T-AT----ATGTGATAAGGCCTAATGGCCGATGTGATGA
**
51434959 ATGTGAAAGTGTATATGCGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51435006 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
51435053 ATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGTCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
** * *
51435100 ATGTGAAAGTGTATATGCGTGAGAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
51435147 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
51435194 ATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
51435220 TCCCGAAGGG
Statistics
Matches: 424, Mismatches: 25, Indels: 24
0.90 0.05 0.05
Matches are distributed among these distances:
47 362 0.85
49 11 0.03
51 4 0.01
52 1 0.00
53 1 0.00
54 4 0.01
58 41 0.10
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:51435165 original size:246 final size:247
Alignment explanation
Indices: 51434711--51435168 Score: 828
Period size: 246 Copynumber: 1.9 Consensus size: 247
51434701 TTAAACCCAT
*
51434711 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG-ATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
51434776 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
65 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* *
51434841 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
130 GCCGATGTGATGAATGTGAAAGTGTATATACGTGAGAAGGCCTAATGGCCGATGTGATGAATGTG
51434906 AAAGTGTATATATGTGATAAGGATGTGATAAGGCTTAATGGCCGATGTGATGA
195 AAAGTGTATATATGTGATAAGGATGTGATAAGGCTTAATGGCCGATGTGATGA
*
51434959 ATGTGAAAGTG-TATATGCGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAGTGATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
51435023 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* * *
51435088 TCGATGTGATGAATGTGAAAGTGTATATGCGTGAGAAGGCTTAATGGCCGATGTGATGAATGTGA
131 CCGATGTGATGAATGTGAAAGTGTATATACGTGAGAAGGCCTAATGGCCGATGTGATGAATGTGA
51435153 AAGTGTATATATGTGA
196 AAGTGTATATATGTGA
51435169 CAGGGCCGAG
Statistics
Matches: 202, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
246 191 0.95
248 11 0.05
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (247 bp):
ATGTGAAAGTGATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATACGTGAGAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATGTGATAAGGATGTGATAAGGCTTAATGGCCGATGTGATGA
Found at i:51435394 original size:37 final size:37
Alignment explanation
Indices: 51435340--51435415 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
51435330 GAGTTCTAAG
* * *
51435340 GACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
*
51435377 GACCCGATAACTTCGTGTGGAGATTATGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
51435414 GA
1 GA
51435416 TTTCGTAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
Found at i:51445837 original size:46 final size:45
Alignment explanation
Indices: 51445770--51445944 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
51445760 TGTAACCCGC
* *
51445770 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCAT
* * *
51445816 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCAT
* * *
51445866 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCAT
* *
51445909 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
51445945 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.55
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCAT
Found at i:51445890 original size:93 final size:93
Alignment explanation
Indices: 51445777--51445948 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
51445767 CGCCCATAAG
* * *
51445777 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
*
51445842 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
51445870 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
51445935 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
51445949 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:51449376 original size:27 final size:27
Alignment explanation
Indices: 51449346--51449611 Score: 170
Period size: 27 Copynumber: 10.0 Consensus size: 27
51449336 ACATGCTAGA
* *
51449346 AAATGTAAGCCTTTGTAGAAATCTATG
1 AAATGGAAGCCTTTGTGGAAATCTATG
* * **
51449373 AAATGAAAGTCTTTGTGGCGTATC--TG
1 AAATGGAAGCCTTTGTGG-AAATCTATG
* *
51449399 AAATGGAAGCCTTTATGGAAATATATG
1 AAATGGAAGCCTTTGTGGAAATCTATG
*
51449426 AAATGGAAGCCTTTGTGGCAATCTATG
1 AAATGGAAGCCTTTGTGGAAATCTATG
* ** * *
51449453 AAATGGAAACCTTTACAGCATATC--TG
1 AAATGGAAGCCTTT-GTGGAAATCTATG
** **
51449479 AAATGGAAGTATTTGTGGCGTATC--TG
1 AAATGGAAGCCTTTGTGG-AAATCTATG
* *
51449505 AAATGGAAGCCTTTGTGGCAATCTGTG
1 AAATGGAAGCCTTTGTGGAAATCTATG
* *
51449532 AAATAGAAGCCTTTGTGGCATATCTA--
1 AAATGGAAGCCTTTGTGG-AAATCTATG
** * **
51449558 AAATGGAAGAATTTTTGTCAATCTATG
1 AAATGGAAGCCTTTGTGGAAATCTATG
* **
51449585 AAATTGAAGCCTTTGTGGTGATCTATG
1 AAATGGAAGCCTTTGTGGAAATCTATG
51449612 GAAAGGATTG
Statistics
Matches: 180, Mismatches: 49, Indels: 20
0.72 0.20 0.08
Matches are distributed among these distances:
25 11 0.06
26 65 0.36
27 93 0.52
28 11 0.06
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.32
Consensus pattern (27 bp):
AAATGGAAGCCTTTGTGGAAATCTATG
Found at i:51449426 original size:53 final size:53
Alignment explanation
Indices: 51449346--51449566 Score: 205
Period size: 53 Copynumber: 4.2 Consensus size: 53
51449336 ACATGCTAGA
* * * *
51449346 AAATGTAAGCCTTTGTAGAAATCTATGAAATGAAAGTCTTTGTGGCGTATCTG
1 AAATGGAAGCCTTTATAGAAATATATGAAATGAAAGCCTTTGTGGCGTATCTG
* * *
51449399 AAATGGAAGCCTTTATGGAAATATATGAAATGGAAGCCTTTGTGGC-AATCTATG
1 AAATGGAAGCCTTTATAGAAATATATGAAATGAAAGCCTTTGTGGCGTATC--TG
* * * * * **
51449453 AAATGGAAACCTTTACAG-CATATCTGAAATGGAAGTATTTGTGGCGTATCTG
1 AAATGGAAGCCTTTATAGAAATATATGAAATGAAAGCCTTTGTGGCGTATCTG
* * * * * * *
51449505 AAATGGAAGCCTTTGTGGCAATCTGTGAAAT-AGAAGCCTTTGTGGCATATCTA
1 AAATGGAAGCCTTTATAGAAATATATGAAATGA-AAGCCTTTGTGGCGTATCTG
51449558 AAATGGAAG
1 AAATGGAAG
51449567 AATTTTTGTC
Statistics
Matches: 136, Mismatches: 27, Indels: 10
0.79 0.16 0.06
Matches are distributed among these distances:
52 19 0.14
53 97 0.71
54 20 0.15
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.30
Consensus pattern (53 bp):
AAATGGAAGCCTTTATAGAAATATATGAAATGAAAGCCTTTGTGGCGTATCTG
Found at i:51449534 original size:79 final size:79
Alignment explanation
Indices: 51449346--51449611 Score: 230
Period size: 80 Copynumber: 3.3 Consensus size: 79
51449336 ACATGCTAGA
* * * * *** * * **
51449346 AAATGTAAGCCTTTGTAGAAATCTATGAAAT-GAAAGTCTTTGTGGCGTATCTGAAATGGAAGCC
1 AAATGGAAGCCTTTGTGGCAATCTATGAAATAGAAA-CCTTTACAGCATATCTAAAATGGAAGAA
* * *
51449410 TTTATGGAAATATATG
65 TTTGTGGCAAT-CATG
* * *
51449426 AAATGGAAGCCTTTGTGGCAATCTATGAAATGGAAACCTTTACAGCATATCTGAAATGGAAGTAT
1 AAATGGAAGCCTTTGTGGCAATCTATGAAATAGAAACCTTTACAGCATATCTAAAATGGAAGAAT
*
51449491 TTGTGGCGTATC-TG
66 TTGTGGC-AATCATG
* * ***
51449505 AAATGGAAGCCTTTGTGGCAATCTGTGAAATAGAAGCCTTTGTGGCATATCTAAAATGGAAGAAT
1 AAATGGAAGCCTTTGTGGCAATCTATGAAATAGAAACCTTTACAGCATATCTAAAATGGAAGAAT
* *
51449570 TTTTGTCAATCTATG
66 TTGTGGCAATC-ATG
* **
51449585 AAATTGAAGCCTTTGTGGTGATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
51449612 GAAAGGATTG
Statistics
Matches: 153, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
78 3 0.02
79 64 0.42
80 80 0.52
81 6 0.04
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.32
Consensus pattern (79 bp):
AAATGGAAGCCTTTGTGGCAATCTATGAAATAGAAACCTTTACAGCATATCTAAAATGGAAGAAT
TTGTGGCAATCATG
Found at i:51449580 original size:53 final size:53
Alignment explanation
Indices: 51449365--51449602 Score: 180
Period size: 53 Copynumber: 4.5 Consensus size: 53
51449355 CCTTTGTAGA
* * * ** * *
51449365 AATCTATGAAAT-GAAAGTCTTTGTGGCGTATCTGAAATGGAAGCCTTTATGGA
1 AATCTATGAAATAG-AAGCCTTTGTGGCATATCTAAAATGGAAGAATTTGTGGC
* * * ***
51449418 AATATATGAAATGGAAGCCTTTGTGGCA-ATCTATGAAATGGAA-ACCTTTACAGC
1 AATCTATGAAATAGAAGCCTTTGTGGCATATCTA--AAATGGAAGA-ATTTGTGGC
* ** * * **
51449472 ATATC--TGAAATGGAAGTATTTGTGGCGTATCTGAAATGGAAGCCTTTGTGGC
1 A-ATCTATGAAATAGAAGCCTTTGTGGCATATCTAAAATGGAAGAATTTGTGGC
* * *
51449524 AATCTGTGAAATAGAAGCCTTTGTGGCATATCTAAAATGGAAGAATTTTTGTC
1 AATCTATGAAATAGAAGCCTTTGTGGCATATCTAAAATGGAAGAATTTGTGGC
*
51449577 AATCTATGAAATTGAAGCCTTTGTGG
1 AATCTATGAAATAGAAGCCTTTGTGG
51449603 TGATCTATGG
Statistics
Matches: 148, Mismatches: 28, Indels: 18
0.76 0.14 0.09
Matches are distributed among these distances:
51 3 0.02
52 19 0.13
53 104 0.70
54 20 0.14
55 2 0.01
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (53 bp):
AATCTATGAAATAGAAGCCTTTGTGGCATATCTAAAATGGAAGAATTTGTGGC
Found at i:51449587 original size:106 final size:106
Alignment explanation
Indices: 51449365--51449602 Score: 288
Period size: 106 Copynumber: 2.2 Consensus size: 106
51449355 CCTTTGTAGA
*
51449365 AATCTATGAAATGAAAGTCTTTGTGGCGTATCTGAAATGGAAGCCTTTATGGAAATATATGAAAT
1 AATCTATGAAATGGAAGTCTTTGTGGCGTATCTGAAATGGAAGCCTTTATGGAAATATATGAAAT
* *
51449430 GGAAGCCTTTGTGGCAATCTATGAAATGGAAACCTTTACAGC
66 AGAAGCCTTTGTGGCAATCTA-GAAATGGAAACATTTACAGC
* * * * *
51449472 ATATC--TGAAATGGAAGTATTTGTGGCGTATCTGAAATGGAAGCCTTTGTGGCAATCTGTGAAA
1 A-ATCTATGAAATGGAAGTCTTTGTGGCGTATCTGAAATGGAAGCCTTTATGGAAATATATGAAA
**
51449535 TAGAAGCCTTTGTGGCATATCTA-AAATGGAAGA-ATTT-TTGTC
65 TAGAAGCCTTTGTGGCA-ATCTAGAAATGGAA-ACATTTACAG-C
* *
51449577 AATCTATGAAATTGAAGCCTTTGTGG
1 AATCTATGAAATGGAAGTCTTTGTGG
51449603 TGATCTATGG
Statistics
Matches: 112, Mismatches: 13, Indels: 13
0.81 0.09 0.09
Matches are distributed among these distances:
104 4 0.04
105 13 0.12
106 86 0.77
107 6 0.05
108 3 0.03
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (106 bp):
AATCTATGAAATGGAAGTCTTTGTGGCGTATCTGAAATGGAAGCCTTTATGGAAATATATGAAAT
AGAAGCCTTTGTGGCAATCTAGAAATGGAAACATTTACAGC
Found at i:51456816 original size:27 final size:27
Alignment explanation
Indices: 51456785--51456962 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51456775 TAAATTGTAC
51456785 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
51456812 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51456838 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
51456866 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51456894 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51456921 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
51456948 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51456963 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51456899 original size:82 final size:81
Alignment explanation
Indices: 51456786--51456941 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51456776 AAATTGTACA
* *
51456786 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
51456850 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
51456867 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
51456932 TGCGAGTTGA
65 TGCGAATTGA
51456942 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51456953 original size:82 final size:81
Alignment explanation
Indices: 51456782--51456962 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
51456772 GATTAAATTG
* *
51456782 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
51456847 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
51456863 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
51456927 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
51456945 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
51456963 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:51464485 original size:27 final size:27
Alignment explanation
Indices: 51464454--51464630 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
51464444 TAAATTGTAC
51464454 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
51464481 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51464507 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
51464535 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51464563 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51464590 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
51464617 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
51464631 AGACTCAATA
Statistics
Matches: 128, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51464568 original size:82 final size:81
Alignment explanation
Indices: 51464455--51464610 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51464445 AAATTGTACA
* *
51464455 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
51464519 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
51464536 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
51464601 TGCGAGTTGA
65 TGCGAATTGA
51464611 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51464622 original size:82 final size:81
Alignment explanation
Indices: 51464451--51464630 Score: 227
Period size: 82 Copynumber: 2.2 Consensus size: 81
51464441 GATTAAATTG
* *
51464451 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
51464516 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
51464532 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
51464596 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
51464614 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
51464631 AGACTCAATA
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:51472314 original size:42 final size:42
Alignment explanation
Indices: 51472268--51472377 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
51472258 AGATTACGCA
* * * *
51472268 TAAGACCATATCTGGGATATGGCATCGATATGAGGATTC-GTG
1 TAAGACCATATCTGGGATATGGCATCGATA-AAAGATCCTATG
* *
51472310 TAAGACCATAGCTGGGCTATTGGCATCGATAAAAGATCCTATG
1 TAAGACCATATCTGGGATA-TGGCATCGATAAAAGATCCTATG
* *
51472353 TAAGACCGTATCTAGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
51472378 TGGTATGATT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 28 0.50
43 28 0.50
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATAAAAGATCCTATG
Found at i:51473498 original size:20 final size:20
Alignment explanation
Indices: 51473473--51473526 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
51473463 GACGGCCTAC
51473473 CCACACGGGTGTGTCCCAAG
1 CCACACGGGTGTGTCCCAAG
* * *
51473493 CCACACAGGAGTGTCCTAAG
1 CCACACGGGTGTGTCCCAAG
51473513 CCACACGGGTGTGT
1 CCACACGGGTGTGT
51473527 GGCCCTTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (20 bp):
CCACACGGGTGTGTCCCAAG
Found at i:51477145 original size:13 final size:13
Alignment explanation
Indices: 51477127--51477154 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
51477117 TAGTAACATT
51477127 AGATCAACAGGAA
1 AGATCAACAGGAA
51477140 AGATCAACAGGAA
1 AGATCAACAGGAA
51477153 AG
1 AG
51477155 TCACAGTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.14, G:0.25, T:0.07
Consensus pattern (13 bp):
AGATCAACAGGAA
Found at i:51485218 original size:24 final size:24
Alignment explanation
Indices: 51485186--51485233 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
51485176 ACATGGGTTG
51485186 GATTGGATAAATCAATATCACACT
1 GATTGGATAAATCAATATCACACT
51485210 GATTGGATAAATCAATATCACACT
1 GATTGGATAAATCAATATCACACT
51485234 ATCTTAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (24 bp):
GATTGGATAAATCAATATCACACT
Found at i:51486953 original size:112 final size:111
Alignment explanation
Indices: 51486792--51487024 Score: 313
Period size: 112 Copynumber: 2.1 Consensus size: 111
51486782 CCATATAATC
* * * *
51486792 AGTAGATATCACTCGTTTGAGCCTATTAGTATAATCAGTGGATATCACTCGTTTAAGCAATTTTC
1 AGTAGATATTACTCATTTGAGCCCATTAGTATAATCAGTGGATATCACTCGTTTAAGCAACTTTC
* * *
51486857 AATATAATCAGTAAACATTTCTCTTTTAAGAACGTTCAGTACATTA
66 AATATAATCAATAAACATTGCTCTTTTAAGAACGTTCAGTACATCA
* * *
51486903 AGTAGATATTTCTCATTTGAGCCCATTCAGTATAATTAGTGGATATCACTCGTTTGAGCAACTTT
1 AGTAGATATTACTCATTTGAGCCCATT-AGTATAATCAGTGGATATCACTCGTTTAAGCAACTTT
* * * * * *
51486968 CAGTATAATCAATAAACATTGCTCTTTTGAGCATGTTCAGTAGATCC
65 CAATATAATCAATAAACATTGCTCTTTTAAGAACGTTCAGTACATCA
51487015 AGTAGATATT
1 AGTAGATATT
51487025 GCTTGTTTGT
Statistics
Matches: 105, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
111 23 0.22
112 82 0.78
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (111 bp):
AGTAGATATTACTCATTTGAGCCCATTAGTATAATCAGTGGATATCACTCGTTTAAGCAACTTTC
AATATAATCAATAAACATTGCTCTTTTAAGAACGTTCAGTACATCA
Found at i:51488393 original size:13 final size:13
Alignment explanation
Indices: 51488375--51488399 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51488365 AATAAGACTC
51488375 TAAAAATATTTAA
1 TAAAAATATTTAA
51488388 TAAAAATATTTA
1 TAAAAATATTTA
51488400 CATCTTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TAAAAATATTTAA
Found at i:51488587 original size:29 final size:29
Alignment explanation
Indices: 51488552--51488610 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
51488542 CGTATAATTT
51488552 AAATATAATTATTTGAACTTACTCATCAG
1 AAATATAATTATTTGAACTTACTCATCAG
51488581 AAATATAATTATTTGAACTTACTCATCAG
1 AAATATAATTATTTGAACTTACTCATCAG
51488610 A
1 A
51488611 CTTATGATCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.37
Consensus pattern (29 bp):
AAATATAATTATTTGAACTTACTCATCAG
Found at i:51489802 original size:63 final size:64
Alignment explanation
Indices: 51489724--51489869 Score: 181
Period size: 63 Copynumber: 2.3 Consensus size: 64
51489714 TAACATTCCT
* * *
51489724 CATTGTGGCCAAGCCACTCAATAAT-ACAGACAAGCTACACATTGTGGTCAAACCACTCAAT-AA
1 CATTGTGGCCAAGCCACTCAAT-ATCACAGACAAACTACACATTATGGACAAACCACTCAATGAA
* * * *
51489787 CATTGTGCCCAAGCCACTCAATATCGCAGACAAACTGCACATTATGGACAAGCCACTCAATGAA
1 CATTGTGGCCAAGCCACTCAATATCACAGACAAACTACACATTATGGACAAACCACTCAATGAA
* *
51489851 -GTTATGGCCAAGCCACTCA
1 CATTGTGGCCAAGCCACTCA
51489870 CTATTGTAGT
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
62 2 0.03
63 67 0.94
64 2 0.03
ACGTcount: A:0.36, C:0.29, G:0.16, T:0.20
Consensus pattern (64 bp):
CATTGTGGCCAAGCCACTCAATATCACAGACAAACTACACATTATGGACAAACCACTCAATGAA
Found at i:51489803 original size:24 final size:24
Alignment explanation
Indices: 51489762--51489809 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
51489752 GACAAGCTAC
**
51489762 ACATTGTGGTCAAACCACTCAATA
1 ACATTGTGCCCAAACCACTCAATA
*
51489786 ACATTGTGCCCAAGCCACTCAATA
1 ACATTGTGCCCAAACCACTCAATA
51489810 TCGCAGACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.23
Consensus pattern (24 bp):
ACATTGTGCCCAAACCACTCAATA
Found at i:51491079 original size:13 final size:13
Alignment explanation
Indices: 51491061--51491086 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51491051 TAGTTTACCA
51491061 AAATTATTATAAT
1 AAATTATTATAAT
51491074 AAATTATTATAAT
1 AAATTATTATAAT
51491087 TAAGATTTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTATTATAAT
Found at i:51493084 original size:40 final size:40
Alignment explanation
Indices: 51493006--51493229 Score: 294
Period size: 40 Copynumber: 5.5 Consensus size: 40
51492996 ACCCAAGTAT
* * *
51493006 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
51493045 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
51493085 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
51493125 CTTCGGGACTTAGCCCGGGA-ATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCC-GGATATAGTC-ACTA---GCACAAATGC
* *
51493168 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
51493208 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
51493230 CATCCGAATA
Statistics
Matches: 167, Mismatches: 9, Indels: 17
0.87 0.05 0.09
Matches are distributed among these distances:
39 12 0.07
40 115 0.69
41 4 0.02
42 3 0.02
43 33 0.20
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:51493188 original size:83 final size:81
Alignment explanation
Indices: 51493006--51493229 Score: 289
Period size: 83 Copynumber: 2.8 Consensus size: 81
51492996 ACCCAAGTAT
* * * *
51493006 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCATAAATGCCTTCGGGTCTTAGCCC-GGATATA
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGGATATA
**
51493068 GTCACTAGCATGAATGC
65 GTCACTAGCACAAATGC
51493085 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGA-ATAG
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGATATAG
51493149 -CAACTACTCGCACAAATGC
66 TC-ACTA---GCACAAATGC
* *
51493168 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCC-GGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGATAT
51493230 CATCCGAATA
Statistics
Matches: 129, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
79 13 0.10
80 45 0.35
81 4 0.03
82 3 0.02
83 64 0.50
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGATATAG
TCACTAGCACAAATGC
Found at i:51516944 original size:79 final size:81
Alignment explanation
Indices: 51516807--51516990 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
51516797 TCGAATGATA
* * * * *
51516807 TCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAAGTGACTATATCCGGATTCAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGATTAAGATCCGAAGGCATT
51516872 TGTGCGAGTTACTAAT
66 TGTGCGAGTTACTAAT
* * *
51516888 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGATTAAGAT-CCGAAGGCAT
51516950 TTGTGCGAGTTACT-AT
65 TTGTGCGAGTTACTAAT
* *
51516966 AACCGGGC-AATGTCCCAAAGGCATT
1 -TCCGGGCTAA-GTCCCGAAGGCATT
51516991 TGAGCGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
78 5 0.06
79 48 0.54
80 25 0.28
81 11 0.12
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGATTAAGATCCGAAGGCATT
TGTGCGAGTTACTAAT
Found at i:51516956 original size:40 final size:40
Alignment explanation
Indices: 51516806--51517015 Score: 198
Period size: 40 Copynumber: 5.3 Consensus size: 40
51516796 TTCGAATGAT
* * * * * *
51516806 ATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
51516847 ATCCGGATTCAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
51516887 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
51516926 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * * *
51516967 A-CCGGG-CAATGTCCCAAAGGCATTTGAGCGAG-TAGCTAT
1 ATCCGGGTTAA-GTCCCGAAGGCATTTGTGCGAGTTA-CTAA
51517006 ATCC-GGTTAA
1 ATCCGGGTTAA
51517016 ATTCTGAAGG
Statistics
Matches: 140, Mismatches: 21, Indels: 17
0.79 0.12 0.10
Matches are distributed among these distances:
39 42 0.30
40 72 0.51
41 25 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:51517014 original size:79 final size:78
Alignment explanation
Indices: 51516842--51517015 Score: 203
Period size: 79 Copynumber: 2.2 Consensus size: 78
51516832 GTGCTAAGTG
* * *
51516842 ACTATATCCGGATTCAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGG
*
51516907 CATTGGTGCGAGTT
65 CATTGGAGCGAGTT
*
51516921 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGC-AATGTCCCA
1 ACTATATCC-GGTTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAA-G-CCCA
*
51516983 AAGGCATTTGAGCGAG-T
61 AAGGCATTGGAGCGAGTT
51517000 AGCTATATCCGGTTAA
1 A-CTATATCCGGTTAA
51517016 ATTCTGAAGG
Statistics
Matches: 82, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
78 5 0.06
79 51 0.62
80 26 0.32
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
ACTATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGC
ATTGGAGCGAGTT
Found at i:51519126 original size:20 final size:20
Alignment explanation
Indices: 51519101--51519140 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
51519091 ATTTTAAGAA
*
51519101 TTATTTTAGTATCTTTTTAT
1 TTATTTTAATATCTTTTTAT
*
51519121 TTATTTTAATATTTTTTTAT
1 TTATTTTAATATCTTTTTAT
51519141 GTTTTTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (20 bp):
TTATTTTAATATCTTTTTAT
Found at i:51519151 original size:20 final size:20
Alignment explanation
Indices: 51519114--51519187 Score: 62
Period size: 20 Copynumber: 3.5 Consensus size: 20
51519104 TTTTAGTATC
*
51519114 TTTTTATTTATTTTAATATT
1 TTTTTATTTATTTAAATATT
51519134 TTTTTATGTT-TTTAAATATAT
1 TTTTTAT-TTATTTAAATAT-T
*
51519155 TTGATTTATTATATTTTTAA-ATT
1 TT--TTTATT-TA-TTTAAATATT
51519178 TTTTTATTTA
1 TTTTTATTTA
51519188 ATGAAATAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
20 17 0.38
21 11 0.24
22 1 0.02
23 9 0.20
24 2 0.04
25 5 0.11
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (20 bp):
TTTTTATTTATTTAAATATT
Found at i:51521119 original size:2 final size:2
Alignment explanation
Indices: 51521112--51521136 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
51521102 AAATCTCTTT
51521112 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
51521137 ATTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:51523474 original size:30 final size:30
Alignment explanation
Indices: 51523417--51523475 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
51523407 TACGTGTACG
** *
51523417 GAAAGCTCGTGTAGCTGGACACGCTTTCCA
1 GAAAGCTCGCCTAGCTGGACACACTTTCCA
51523447 GAAAGCTCGCCTAGCTGGACGA-ACTTTCC
1 GAAAGCTCGCCTAGCTGGAC-ACACTTTCC
51523476 CTCAAAATCG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (30 bp):
GAAAGCTCGCCTAGCTGGACACACTTTCCA
Found at i:51527040 original size:15 final size:15
Alignment explanation
Indices: 51527020--51527052 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
51527010 TTTTAAATGG
51527020 TTTTATTAATTTTAA
1 TTTTATTAATTTTAA
51527035 TTTTATTAATTTTAA
1 TTTTATTAATTTTAA
51527050 TTT
1 TTT
51527053 AATATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTATTAATTTTAA
Found at i:51527061 original size:14 final size:15
Alignment explanation
Indices: 51527020--51527060 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
51527010 TTTTAAATGG
*
51527020 TTTTATTAATTTTAA
1 TTTTAATAATTTTAA
*
51527035 TTTTATTAATTTTAA
1 TTTTAATAATTTTAA
51527050 -TTTAAT-ATTTT
1 TTTTAATAATTTT
51527061 TTATAACTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 5 0.20
14 5 0.20
15 15 0.60
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTAATAATTTTAA
Found at i:51527354 original size:20 final size:20
Alignment explanation
Indices: 51527311--51527350 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
51527301 AGCATAAATT
*
51527311 ATCACATCAACGTTGTTAAC
1 ATCACATCAACATTGTTAAC
51527331 ATCACATCAACATTG-TAAC
1 ATCACATCAACATTGTTAAC
51527350 A
1 A
51527351 ATCAAAGACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.40, C:0.25, G:0.07, T:0.28
Consensus pattern (20 bp):
ATCACATCAACATTGTTAAC
Found at i:51530299 original size:6 final size:6
Alignment explanation
Indices: 51530288--51530315 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
51530278 AATAAGTCCA
51530288 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
51530316 CAAAGTCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:51530462 original size:19 final size:19
Alignment explanation
Indices: 51530438--51530516 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
51530428 AATCTTTAAG
51530438 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
51530457 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
51530476 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
51530493 GATATGCAATATTGAAGATAT
1 GATATGCAATCTT--AGATAT
51530514 GAT
1 GAT
51530517 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 17 0.31
19 29 0.53
21 9 0.16
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:51532620 original size:16 final size:14
Alignment explanation
Indices: 51532588--51532640 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 14
51532578 ATCGATACCT
51532588 TTTGCATTCATGCA
1 TTTGCATTCATGCA
51532602 TTTGCATCTCATAGCA
1 TTTGCAT-TCAT-GCA
51532618 TTT-CATTACAT-CA
1 TTTGCATT-CATGCA
51532631 TTTGCATTCA
1 TTTGCATTCA
51532641 AAATTATAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 7 0.20
14 12 0.34
15 10 0.29
16 6 0.17
ACGTcount: A:0.25, C:0.23, G:0.09, T:0.43
Consensus pattern (14 bp):
TTTGCATTCATGCA
Found at i:51533068 original size:16 final size:14
Alignment explanation
Indices: 51533036--51533088 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 14
51533026 ATCGATACCT
51533036 TTTGCATTCATGCA
1 TTTGCATTCATGCA
51533050 TTTGCATCTCATAGCA
1 TTTGCAT-TCAT-GCA
51533066 TTT-CATTGCAT-CA
1 TTTGCATT-CATGCA
*
51533079 TTTGGATTCA
1 TTTGCATTCA
51533089 AAATTATAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
13 7 0.21
14 11 0.32
15 10 0.29
16 6 0.18
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.43
Consensus pattern (14 bp):
TTTGCATTCATGCA
Found at i:51534707 original size:21 final size:21
Alignment explanation
Indices: 51534669--51534708 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
51534659 ATAAAACAAT
*
51534669 TTTTTTAAAAATATATATAAA
1 TTTTATAAAAATATATATAAA
51534690 TTTTATAACAAATA-ATATA
1 TTTTATAA-AAATATATATA
51534709 GACACAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (21 bp):
TTTTATAAAAATATATATAAA
Found at i:51539620 original size:1 final size:1
Alignment explanation
Indices: 51539614--51539741 Score: 76
Period size: 1 Copynumber: 128.0 Consensus size: 1
51539604 CTTCTATTTC
* * ** * * * * * *
51539614 AAAAAAAAAAAGAAAAAATAAAAATGAAAAAAGAAAAAAGAAAAAAGAAAAACAAGAAAAAAGAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * * *
51539679 AAAAGAAAAAAGAAAAAAGAAAAAAGAAAAGAAAAAGAAAAAGAATAATAAAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
51539742 TGGAGAGGCC
Statistics
Matches: 88, Mismatches: 39, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 88 1.00
ACGTcount: A:0.84, C:0.01, G:0.12, T:0.03
Consensus pattern (1 bp):
A
Found at i:51539636 original size:14 final size:13
Alignment explanation
Indices: 51539614--51539741 Score: 127
Period size: 14 Copynumber: 9.5 Consensus size: 13
51539604 CTTCTATTTC
51539614 AAAAAAAAAAAGA
1 AAAAAAAAAAAGA
*
51539627 AAAAATAAAAATGA
1 AAAAA-AAAAAAGA
51539641 AAAAAGAAAAAAGAA
1 AAAAA-AAAAAAG-A
51539656 AAAAGAAAAACAAGA
1 AAAA-AAAAA-AAGA
51539671 AAAAAGAAAAAAGA
1 AAAAA-AAAAAAGA
51539685 AAAAAGAAAAAAG-
1 AAAAA-AAAAAAGA
*
51539698 AAAAAAGAAAAG-
1 AAAAAAAAAAAGA
*
51539710 AAAAAGAAAAAG-
1 AAAAAAAAAAAGA
* *
51539722 AATAATAAAAAGA
1 AAAAAAAAAAAGA
51539735 AAAAAAA
1 AAAAAAA
51539742 TGGAGAGGCC
Statistics
Matches: 99, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
12 26 0.26
13 15 0.15
14 36 0.36
15 18 0.18
16 4 0.04
ACGTcount: A:0.84, C:0.01, G:0.12, T:0.03
Consensus pattern (13 bp):
AAAAAAAAAAAGA
Found at i:51539671 original size:44 final size:43
Alignment explanation
Indices: 51539614--51539739 Score: 159
Period size: 44 Copynumber: 2.9 Consensus size: 43
51539604 CTTCTATTTC
* *
51539614 AAAA-AAAAAAAGAAAAAATAAAAATGAAAAAAGAAAAAAGAA
1 AAAAGAAAAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAAAGAA
51539656 AAAAGAAAAACAAGAAAAAAGAAAAAAGAAAAAAGAAAAAAGAA
1 AAAAGAAAAA-AAGAAAAAAGAAAAAAGAAAAAAGAAAAAAGAA
* * *
51539700 AAAAGAAAAGAAAAAGAAAAAG-AATAA-TAAAAAGAAAAAA
1 AAAAGAAAA-AAAGA-AAAAAGAAAAAAGAAAAAAGAAAAAA
51539740 AATGGAGAGG
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
42 4 0.05
43 17 0.23
44 47 0.63
45 7 0.09
ACGTcount: A:0.84, C:0.01, G:0.12, T:0.03
Consensus pattern (43 bp):
AAAAGAAAAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAAAGAA
Found at i:51539739 original size:7 final size:7
Alignment explanation
Indices: 51539614--51539720 Score: 150
Period size: 7 Copynumber: 15.6 Consensus size: 7
51539604 CTTCTATTTC
51539614 AAAAA-A
1 AAAAAGA
51539620 AAAAAGA
1 AAAAAGA
*
51539627 AAAAATA
1 AAAAAGA
*
51539634 AAAATGA
1 AAAAAGA
51539641 AAAAAGA
1 AAAAAGA
51539648 AAAAAGA
1 AAAAAGA
51539655 AAAAAGAA
1 AAAAAG-A
51539663 AAACAAGA
1 AAA-AAGA
51539671 AAAAAGA
1 AAAAAGA
51539678 AAAAAGA
1 AAAAAGA
51539685 AAAAAGA
1 AAAAAGA
51539692 AAAAAGA
1 AAAAAGA
51539699 AAAAAG-
1 AAAAAGA
51539705 -AAAAG-
1 AAAAAGA
51539710 AAAAAGA
1 AAAAAGA
51539717 AAAA
1 AAAA
51539721 GAATAATAAA
Statistics
Matches: 92, Mismatches: 4, Indels: 9
0.88 0.04 0.09
Matches are distributed among these distances:
5 5 0.05
6 10 0.11
7 66 0.72
8 8 0.09
9 3 0.03
ACGTcount: A:0.85, C:0.01, G:0.12, T:0.02
Consensus pattern (7 bp):
AAAAAGA
Found at i:51540764 original size:87 final size:87
Alignment explanation
Indices: 51540637--51541840 Score: 444
Period size: 88 Copynumber: 13.7 Consensus size: 87
51540627 AAACAAGATT
* *
51540637 TGGAATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACA-CTCTTGTGCTTACAG
1 TGGAATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATCTGACATC-CCTGTGCTTACAG
**
51540701 CGAAGTAGATTGAAGATTTCAGCA
65 CGAAGTAGATTGAAGATAGCAG-A
* * * * * *
51540725 TGGAATCCCTGTG-TTATTGGGAACA-AGTTAAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
1 TGGAATCCCTGTGTTTATAGGGAACAGA-TTGAAGATAGCAGATCTGACATCCCTGTGCTTACAG
* * *
51540788 GGAA-CAGATCGAAGATAGCAGA
65 CGAAGTAGATTGAAGATAGCAGA
* * * * * * ** *
51540810 TCTGACA-CTCTTGTGCTTACAGCGAAGTAGATTGAAGATTTCAGCAT-GGA-ATCCCTGTG-TT
1 T-GGA-ATC-CCTGTGTTTATAGGGAA-CAGATTGAAGATAGCAG-ATCTGACATCCCTGTGCTT
** * ** *
51540871 ATTGGGAACAAG-TTAAAGATAGCAGA
61 ACAGCGAAGTAGATTGAAGATAGCAGA
* * *
51540897 TTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACA-CTCTTGTGCTTAC
1 --TGGAATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATCTGACATC-CCTGTGCTTAC
**
51540961 AGCGAAGTAGATTGAAGATTTCAGCA
63 AGCGAAGTAGATTGAAGATAGCAG-A
* * * * * *
51540987 TGGAATCCCTGTG-TTATTGGGAACA-AGTTAAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
1 TGGAATCCCTGTGTTTATAGGGAACAGA-TTGAAGATAGCAGATCTGACATCCCTGTGCTTACAG
* * *
51541050 GGAA-CAGATCGAAGATAGCAGA
65 CGAAGTAGATTGAAGATAGCAGA
* * * * * * ** * * *
51541072 TCTGACA-CTCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAG--CATGGCATCCTTGTGTTTA
1 T-GGA-ATCCCTGTGTTTATAGGGAA-CAGATTGAAGATAGCAGATC-TGACATCCCTGTGCTTA
** **
51541134 TTG-GAAACA-AGTTGAAGATAGCAGA
62 CAGCGAAGTAGA-TTGAAGATAGCAGA
* * ** *
51541159 TTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGCAGATCTAACA-CTCCTGTGCTTAC
1 --TGGAATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATCTGACATC-CCTGTGCTTAC
* * ** *
51541223 AGCGAAGCAGATCGAAGATTTCAACA
63 AGCGAAGTAGATTGAAGATAGC-AGA
* * * * *
51541249 TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
1 TGGAATCCCTGTGTTTATAGGGAACAGA-TTGAAGATAGCAGATCTGACATCCCTGTGCTTACAG
* * * **
51541313 GGAA-CAAATCAAAGATAGCAGA
65 CGAAGTAGATTGAAGATAGCAGA
* * ** * ** * *
51541335 TCTGACA-CTCCTGT-TCTTACAGTAAAGCAGGTTGAAGATTTCAG--CATGGCATCCCTGTGTT
1 T-GGA-ATC-CCTGTGT-TTATAGGGAA-CAGATTGAAGATAGCAGATC-TGACATCCCTGTGCT
** * ** * *
51541396 TATTGGGAACAAG-TTGAAGATAGAAAA
60 TACAGCGAAGTAGATTGAAGATAGCAGA
* * *
51541423 TTTGGTATCCCTGTGTTTATAGGGAACAGATCGAAGATAGTAGATCTGACA-CTCCTGTGCTTAC
1 --TGGAATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATCTGACATC-CCTGTGCTTAC
* * * **
51541487 AGTGAAGCAGATCGAAGATTTCAGCA
63 AGCGAAGTAGATTGAAGATAGCAG-A
* * * * * * * * *
51541513 TGGCATCCCTTTGTTTATTGGGAACA-AGTTGAATATAGCAGATTTGGCATCCTTGTGTTTATAG
1 TGGAATCCCTGTGTTTATAGGGAACAGA-TTGAAGATAGCAGATCTGACATCCCTGTGCTTACAG
* * *
51541577 GGAA-CAGATCGAAGATAGCAGA
65 CGAAGTAGATTGAAGATAGCAGA
* * * ** ** ** * * *
51541599 TCTG-ATACTCCTGTGCTTACAGCAAAGCAGATCAAAGATTTCAG--CATGGCATCCCTATGTTT
1 T-GGAAT-C-CCTGTGTTTATAGGGAA-CAGATTGAAGATAGCAGATC-TGACATCCCTGTGCTT
** * **
51541661 ATTGGGAACAAG-TTG-AGAATAGCAGA
61 ACAGCGAAGTAGATTGAAG-ATAGCAGA
* * * *
51541687 TTTGGCATCCATGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACA
1 --TGGAATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATCTGACATCCCTGTGCTTACA
* ** ** *** *
51541752 GTGAAACAGATCAAAGATTTTAACA
64 GCGAAGTAGATTGAAGA-TAGCAGA
* * * *
51541777 TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTACAG
1 TGGAATCCCTGTGTTTATAGGGAACAGA-TTGAAGATAGCAGATCTGACATCCCTGTGCTTACAG
51541841 GGAAAAAATC
Statistics
Matches: 831, Mismatches: 209, Indels: 152
0.70 0.18 0.13
Matches are distributed among these distances:
85 6 0.01
86 66 0.08
87 248 0.30
88 409 0.49
89 84 0.10
90 18 0.02
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (87 bp):
TGGAATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATCTGACATCCCTGTGCTTACAGC
GAAGTAGATTGAAGATAGCAGA
Found at i:51541277 original size:132 final size:132
Alignment explanation
Indices: 51540632--51541870 Score: 1930
Period size: 132 Copynumber: 9.4 Consensus size: 132
51540622 CAAAAAAACA
* *
51540632 AGATTTGGAATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCTTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * * *
51540697 ACAGCGAAGTAGATTGAAGATTTCAGCATGGAATCCCTGTG-TTATTGGGAACAAGTTAAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
51540761 GC
131 GC
*
51540763 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCTTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * * *
51540828 ACAGCGAAGTAGATTGAAGATTTCAGCATGGAATCCCTGTG-TTATTGGGAACAAGTTAAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
51540892 GC
131 GC
*
51540894 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCTTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * * *
51540959 ACAGCGAAGTAGATTGAAGATTTCAGCATGGAATCCCTGTG-TTATTGGGAACAAGTTAAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
51541023 GC
131 GC
51541025 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACT-CTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* *
51541089 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCTTGTGTTTATTGGAAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
51541154 GC
131 GC
* * *
51541156 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGCAGATCTAACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* *
51541221 ACAGCGAAGCAGATCGAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
51541286 GC
131 GC
* * *
51541288 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGCAGATCTGACACTCCTGTTCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
** * *
51541353 ACAGTAAAGCAGGTTGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
*
51541418 GA
131 GC
* * *
51541420 AAATTTGGTATCCCTGTGTTTATAGGGAACAGATCGAAGATAGTAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * *
51541485 ACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTTTGTTTATTGGGAACAAGTTGAATATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
51541550 GC
131 GC
* *
51541552 AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGATACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * *
51541617 ACAGCAAAGCAGATCAAAGATTTCAGCATGGCATCCCTATGTTTATTGGGAACAAGTTG-AGAAT
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAG-AT
51541681 AGC
130 AGC
* *
51541684 AGATTTGGCATCCATGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * * * * *
51541749 ACAGTGAAACAGATCAAAGATTTTAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
51541814 GC
131 GC
* * * *
51541816 AGATTTGGCATCCCTGTGTTTACAGGGAAAAAATCGAAGACATAGCAGATTTGAC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG--ATAGCAGATCTGAC
51541871 TTTTGGATGT
Statistics
Matches: 1041, Mismatches: 61, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
130 44 0.04
131 394 0.38
132 588 0.56
133 2 0.00
134 13 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
GC
Found at i:51542518 original size:19 final size:19
Alignment explanation
Indices: 51542494--51542591 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
51542484 AATCTTTAAA
51542494 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
51542513 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
51542532 GATA--AAATCTTAGATAT
1 GATATGCAATCTTAGATAT
51542549 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
51542568 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
51542589 GAT
1 GAT
51542592 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:51542524 original size:36 final size:35
Alignment explanation
Indices: 51542484--51542591 Score: 117
Period size: 36 Copynumber: 2.9 Consensus size: 35
51542474 ATGGAAATAT
51542484 AATCTTTAAAGATATGCAATCTTAGATATGATATGC
1 AATC-TTAAAGATATGCAATCTTAGATATGATATGC
* * **
51542520 AATCTTAGATATGATAAAATCTTAGATATGATATGC
1 AATCTTAAAGAT-ATGCAATCTTAGATATGATATGC
51542556 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTTA-A-A-GATATGCAATCTT--AGATATGAT
51542592 CTTGTAATCT
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
35 6 0.10
36 32 0.55
38 9 0.16
39 2 0.03
40 9 0.16
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (35 bp):
AATCTTAAAGATATGCAATCTTAGATATGATATGC
Found at i:51542907 original size:28 final size:28
Alignment explanation
Indices: 51542876--51542933 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
51542866 TCAAATATGT
51542876 ATATTTATTCCTATCTTTTATACATTTG
1 ATATTTATTCCTATCTTTTATACATTTG
51542904 ATATTTATTCCTATCTTTTATACATTTG
1 ATATTTATTCCTATCTTTTATACATTTG
51542932 AT
1 AT
51542934 TATGTATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.14, G:0.03, T:0.57
Consensus pattern (28 bp):
ATATTTATTCCTATCTTTTATACATTTG
Found at i:51542952 original size:28 final size:28
Alignment explanation
Indices: 51542876--51542953 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
51542866 TCAAATATGT
* * *
51542876 ATATTTATTCCTATCTTTTATACATTTG
1 ATATGTATTCCTATATATTATACATTTG
* * *
51542904 ATATTTATTCCTATCTTTTATACATTTG
1 ATATGTATTCCTATATATTATACATTTG
*
51542932 ATTATGTATT-TTATATATTATA
1 A-TATGTATTCCTATATATTATA
51542954 ATATTTAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 38 0.84
29 7 0.16
ACGTcount: A:0.28, C:0.10, G:0.04, T:0.58
Consensus pattern (28 bp):
ATATGTATTCCTATATATTATACATTTG
Found at i:51544868 original size:43 final size:43
Alignment explanation
Indices: 51544821--51544979 Score: 121
Period size: 43 Copynumber: 3.7 Consensus size: 43
51544811 AACTCGTACA
*
51544821 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCTAGACGTGGTCTTACACGTAATCAAATATCG
* * * * *
51544864 ATGCC-ACTATCCCAAATAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCTAGA-CGTGGTCTTACACGTAATCAAATATCG
* * * * * *
51544906 ATGTCGATGTCCTAGACATGGTCTTGCACGTAAATCTCAA-ATCG
1 ATGCCAACGTCCTAGACGTGGTCTTACACGT-AATC-AAATATCG
*
51544950 ATGCCAACGT-CTCAGGCGTGGTCTTACACG
1 ATGCCAACGTCCT-AGACGTGGTCTTACACG
51544980 ATAACACACC
Statistics
Matches: 86, Mismatches: 22, Indels: 15
0.70 0.18 0.12
Matches are distributed among these distances:
42 22 0.26
43 39 0.45
44 25 0.29
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCTAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:51552493 original size:43 final size:42
Alignment explanation
Indices: 51552382--51552527 Score: 145
Period size: 43 Copynumber: 3.4 Consensus size: 42
51552372 AATGCCAACA
* *
51552382 TCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAAATCAAATA-CGATG-CAATG
* * *
51552425 CCCCAGACAAGGTCTTACATG-AAATCAAATACGATGTCGATG
1 TCCCAGACATGGTCTTACATGTAAATCAAATACGATG-CAATG
* *
51552467 TCCTAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCTAATG
1 TCCCAGACATGGTCTTACATGTAAA--TCAAATACGATGC-AATG
*
51552511 TCCCAGACGTGGTCTTA
1 TCCCAGACATGGTCTTA
51552528 AAGGTAACAC
Statistics
Matches: 85, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
42 25 0.29
43 31 0.36
44 23 0.27
45 6 0.07
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACATGTAAATCAAATACGATGCAATG
Found at i:51552524 original size:44 final size:44
Alignment explanation
Indices: 51552382--51552527 Score: 133
Period size: 42 Copynumber: 3.4 Consensus size: 44
51552372 AATGCCAACA
* * * *
51552382 TCCCAGACGTGGTCTTACATGT-AATC-AAATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAAATCTCAA-ATCGATGCTAATG
* * *
51552425 CCCCAGACAAGGTCTTACATG-AAA--TCAAATACGATG-TCGATG
1 TCCCAGACATGGTCTTACATGTAAATCTCAAAT-CGATGCT-AATG
* *
51552467 TCCTAGACATGGTCTTACACGTAAATCTCAAATCGATGCTAATG
1 TCCCAGACATGGTCTTACATGTAAATCTCAAATCGATGCTAATG
*
51552511 TCCCAGACGTGGTCTTA
1 TCCCAGACATGGTCTTA
51552528 AAGGTAACAC
Statistics
Matches: 81, Mismatches: 14, Indels: 15
0.74 0.13 0.14
Matches are distributed among these distances:
41 2 0.02
42 26 0.32
43 23 0.28
44 23 0.28
45 7 0.09
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACATGTAAATCTCAAATCGATGCTAATG
Found at i:51555261 original size:20 final size:20
Alignment explanation
Indices: 51555236--51555280 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
51555226 AGGGACTAAA
*
51555236 ATGAAAAGTTATAAAATTTG
1 ATGAAAAATTATAAAATTTG
* *
51555256 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTATAAAATTTG
51555276 ATGAA
1 ATGAA
51555281 CTCATGTGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:51557180 original size:21 final size:21
Alignment explanation
Indices: 51557154--51557209 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
51557144 ACGGCCTCTA
51557154 ACACGGACGTGTCCTAGGGTC
1 ACACGGACGTGTCCTAGGGTC
*
51557175 ACACGGGCGTGTCCTAGGGTC
1 ACACGGACGTGTCCTAGGGTC
* *
51557196 ACATGGATGTGTCC
1 ACACGGACGTGTCC
51557210 CTTGAACCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (21 bp):
ACACGGACGTGTCCTAGGGTC
Found at i:51564312 original size:25 final size:25
Alignment explanation
Indices: 51564275--51564358 Score: 73
Period size: 25 Copynumber: 3.2 Consensus size: 25
51564265 ACATAACAAT
*
51564275 TAAAAAAT-TATATTTTAAAAAAAA
1 TAAAAAATAAATATTTTAAAAAAAA
**
51564299 TAAAAAATAAATATAATCTTTTAAAAAA
1 TAAAAAATAAATAT--T-TTAAAAAAAA
*
51564327 TAAAAAAATATAAT-TTTTAAAAAAAT
1 T-AAAAAATA-AATATTTTAAAAAAAA
51564353 TAAAAA
1 TAAAAA
51564359 TTAAGAAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
24 8 0.17
25 9 0.19
26 8 0.17
27 2 0.04
28 9 0.19
29 9 0.19
30 3 0.06
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (25 bp):
TAAAAAATAAATATTTTAAAAAAAA
Found at i:51564359 original size:24 final size:25
Alignment explanation
Indices: 51564293--51564350 Score: 82
Period size: 24 Copynumber: 2.2 Consensus size: 25
51564283 TATATTTTAA
51564293 AAAAAATAAAAAATAAATATAATCTTTT
1 AAAAAAT--AAAA-AAATATAATCTTTT
51564321 AAAAAATAAAAAAATATAAT-TTTT
1 AAAAAATAAAAAAATATAATCTTTT
51564345 AAAAAA
1 AAAAAA
51564351 ATTAAAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.33
25 9 0.30
26 4 0.13
28 7 0.23
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (25 bp):
AAAAAATAAAAAAATATAATCTTTT
Found at i:51564367 original size:17 final size:16
Alignment explanation
Indices: 51564320--51564377 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 16
51564310 TATAATCTTT
*
51564320 TAAAAAATAAAAAAATA
1 TAAAAATTAAAAAAA-A
*** *
51564337 TAATTTTTAAAAAAAT
1 TAAAAATTAAAAAAAA
51564353 TAAAAATTAAGAAAAAA
1 TAAAAATTAA-AAAAAA
51564370 TAAAAATT
1 TAAAAATT
51564378 CTTAAAAATT
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
16 7 0.23
17 24 0.77
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.28
Consensus pattern (16 bp):
TAAAAATTAAAAAAAA
Found at i:51564374 original size:25 final size:24
Alignment explanation
Indices: 51564344--51564401 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
51564334 ATATAATTTT
* *
51564344 TAAAAAAATTAAAAATTAAGAAAAAA
1 TAAAAATATTAAAAATT--CAAAAAA
*
51564370 TAAAAATTCTTAAAAATTCAAAAAA
1 TAAAAA-TATTAAAAATTCAAAAAA
51564395 TAAAAAT
1 TAAAAAT
51564402 CATTTTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 1 0.04
25 12 0.43
26 6 0.21
27 9 0.32
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (24 bp):
TAAAAATATTAAAAATTCAAAAAA
Found at i:51564385 original size:18 final size:17
Alignment explanation
Indices: 51564327--51564385 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
51564317 TTTTAAAAAA
* *
51564327 TAAAAAAATATAATTTT
1 TAAAAAAATAAAAATTT
51564344 TAAAAAAATTAAAAA-TT
1 TAAAAAAA-TAAAAATTT
*
51564361 AAGAAAAAATAAAAATTCT
1 TA-AAAAAATAAAAATT-T
51564380 TAAAAA
1 TAAAAA
51564386 TTCAAAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
17 17 0.50
18 15 0.44
19 2 0.06
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
TAAAAAAATAAAAATTT
Found at i:51569040 original size:25 final size:25
Alignment explanation
Indices: 51569003--51569086 Score: 73
Period size: 25 Copynumber: 3.2 Consensus size: 25
51568993 ACATAACAAT
*
51569003 TAAAAAAT-TATATTTTAAAAAAAA
1 TAAAAAATAAATATTTTAAAAAAAA
**
51569027 TAAAAAATAAATATAATCTTTTAAAAAA
1 TAAAAAATAAATAT--T-TTAAAAAAAA
*
51569055 TAAAAAAATATAAT-TTTTAAAAAAAT
1 T-AAAAAATA-AATATTTTAAAAAAAA
51569081 TAAAAA
1 TAAAAA
51569087 TTAAGAAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
24 8 0.17
25 9 0.19
26 8 0.17
27 2 0.04
28 9 0.19
29 9 0.19
30 3 0.06
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (25 bp):
TAAAAAATAAATATTTTAAAAAAAA
Found at i:51569087 original size:24 final size:25
Alignment explanation
Indices: 51569021--51569078 Score: 82
Period size: 24 Copynumber: 2.2 Consensus size: 25
51569011 TATATTTTAA
51569021 AAAAAATAAAAAATAAATATAATCTTTT
1 AAAAAAT--AAAA-AAATATAATCTTTT
51569049 AAAAAATAAAAAAATATAAT-TTTT
1 AAAAAATAAAAAAATATAATCTTTT
51569073 AAAAAA
1 AAAAAA
51569079 ATTAAAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.33
25 9 0.30
26 4 0.13
28 7 0.23
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (25 bp):
AAAAAATAAAAAAATATAATCTTTT
Found at i:51569095 original size:17 final size:16
Alignment explanation
Indices: 51569048--51569105 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 16
51569038 TATAATCTTT
*
51569048 TAAAAAATAAAAAAATA
1 TAAAAATTAAAAAAA-A
*** *
51569065 TAATTTTTAAAAAAAT
1 TAAAAATTAAAAAAAA
51569081 TAAAAATTAAGAAAAAA
1 TAAAAATTAA-AAAAAA
51569098 TAAAAATT
1 TAAAAATT
51569106 CTTAAAAATT
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
16 7 0.23
17 24 0.77
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.28
Consensus pattern (16 bp):
TAAAAATTAAAAAAAA
Found at i:51569102 original size:25 final size:24
Alignment explanation
Indices: 51569072--51569129 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
51569062 ATATAATTTT
* *
51569072 TAAAAAAATTAAAAATTAAGAAAAAA
1 TAAAAATATTAAAAATT--CAAAAAA
*
51569098 TAAAAATTCTTAAAAATTCAAAAAA
1 TAAAAA-TATTAAAAATTCAAAAAA
51569123 TAAAAAT
1 TAAAAAT
51569130 CATTTTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 1 0.04
25 12 0.43
26 6 0.21
27 9 0.32
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (24 bp):
TAAAAATATTAAAAATTCAAAAAA
Found at i:51569113 original size:18 final size:17
Alignment explanation
Indices: 51569055--51569113 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
51569045 TTTTAAAAAA
* *
51569055 TAAAAAAATATAATTTT
1 TAAAAAAATAAAAATTT
51569072 TAAAAAAATTAAAAA-TT
1 TAAAAAAA-TAAAAATTT
*
51569089 AAGAAAAAATAAAAATTCT
1 TA-AAAAAATAAAAATT-T
51569108 TAAAAA
1 TAAAAA
51569114 TTCAAAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
17 17 0.50
18 15 0.44
19 2 0.06
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
TAAAAAAATAAAAATTT
Found at i:51580395 original size:15 final size:15
Alignment explanation
Indices: 51580372--51580401 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51580362 ACATGTACAT
*
51580372 ATATTTTTTCATGTC
1 ATATATTTTCATGTC
51580387 ATATATTTTCATGTC
1 ATATATTTTCATGTC
51580402 GTAATTGCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.07, T:0.57
Consensus pattern (15 bp):
ATATATTTTCATGTC
Found at i:51589082 original size:33 final size:33
Alignment explanation
Indices: 51588985--51589083 Score: 171
Period size: 33 Copynumber: 3.0 Consensus size: 33
51588975 TTTCTTCTCG
*
51588985 ACATTCCAGCTCCTGTCCAGCAACAAAACACCC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
*
51589018 ACATTCCAGCTCCTGTCCAGCAGCAAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
*
51589051 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
51589084 CCACTCAGTC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.31, C:0.41, G:0.10, T:0.17
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
Found at i:51590018 original size:25 final size:25
Alignment explanation
Indices: 51589984--51590033 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
51589974 ACTCTATTTG
51589984 TAAAACACTCATCTTCAGGGGGAGT
1 TAAAACACTCATCTTCAGGGGGAGT
51590009 TAAAACACTCATCTTCAGGGGGAGT
1 TAAAACACTCATCTTCAGGGGGAGT
51590034 GACTACTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (25 bp):
TAAAACACTCATCTTCAGGGGGAGT
Found at i:51594132 original size:26 final size:26
Alignment explanation
Indices: 51594103--51594158 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
51594093 TGGTACAAAT
51594103 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
51594129 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51594155 TGAT
1 TGAT
51594159 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:51601171 original size:46 final size:46
Alignment explanation
Indices: 51601104--51601198 Score: 127
Period size: 46 Copynumber: 2.1 Consensus size: 46
51601094 ATTCACGCCC
* * * *
51601104 TTCTTTGTTGGAGGTTGGCAAAAACTGAAAAGCCAAAACCTCGGCA
1 TTCTTTGTTGGAAGTCGGCAAAAACCGAAAAGCCAAAACCTCCGCA
* **
51601150 TTCTTTGTTGGAAGTCGGCAAAAGCCGAAAAGCTGAAACCTCCGCA
1 TTCTTTGTTGGAAGTCGGCAAAAACCGAAAAGCCAAAACCTCCGCA
51601196 TTC
1 TTC
51601199 GGGGCCTCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (46 bp):
TTCTTTGTTGGAAGTCGGCAAAAACCGAAAAGCCAAAACCTCCGCA
Found at i:51601742 original size:27 final size:27
Alignment explanation
Indices: 51601704--51601780 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
51601694 AAATTATTGA
* * *
51601704 AATACCCTTGTAGTGTAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCAT
*
51601731 AATGCCCCTGTAGGGTAAAATGACCAT
1 AATACCCCTGTAGGGTAAAATGACCAT
* *
51601758 AATACCCCTGTATGGTAGAATGA
1 AATACCCCTGTAGGGTAAAATGA
51601781 GGATTATGCC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCAT
Found at i:51602097 original size:22 final size:22
Alignment explanation
Indices: 51602026--51602101 Score: 116
Period size: 22 Copynumber: 3.5 Consensus size: 22
51602016 ACGGCCTTTT
51602026 GTCGTCCTGTCTACGACGTTGA
1 GTCGTCCTGTCTACGACGTTGA
* *
51602048 GTCATCCTGTCTACGGCGTTGA
1 GTCGTCCTGTCTACGACGTTGA
51602070 GTCGTCCTGTCTACGACGTTGA
1 GTCGTCCTGTCTACGACGTTGA
**
51602092 ACCGTCCTGT
1 GTCGTCCTGT
51602102 TAACTTGGTG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.13, C:0.29, G:0.26, T:0.32
Consensus pattern (22 bp):
GTCGTCCTGTCTACGACGTTGA
Found at i:51604614 original size:23 final size:23
Alignment explanation
Indices: 51604584--51604633 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
51604574 TAGCTTATAA
*
51604584 GTGCTCCTGTTACTT-GCACTTTG
1 GTGCTCCTATT-CTTAGCACTTTG
51604607 GTGCTCCTATTCTTAGCACTTTG
1 GTGCTCCTATTCTTAGCACTTTG
51604630 GTGC
1 GTGC
51604634 GATCCTGATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 3 0.12
23 22 0.88
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.42
Consensus pattern (23 bp):
GTGCTCCTATTCTTAGCACTTTG
Found at i:51609150 original size:14 final size:15
Alignment explanation
Indices: 51609131--51609160 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
51609121 TTTAACCGAT
51609131 TAAACAAAT-TTTAA
1 TAAACAAATGTTTAA
51609145 TAAACAAATGTTTAA
1 TAAACAAATGTTTAA
51609160 T
1 T
51609161 GCACATACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (15 bp):
TAAACAAATGTTTAA
Found at i:51619453 original size:40 final size:40
Alignment explanation
Indices: 51619359--51619583 Score: 251
Period size: 40 Copynumber: 5.6 Consensus size: 40
51619349 TATTCGAATG
*
51619359 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
51619400 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
51619440 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
51619480 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCT-ACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
51619520 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
51619560 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
51619584 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
39 2 0.01
40 124 0.79
41 29 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:51619539 original size:80 final size:79
Alignment explanation
Indices: 51619359--51619619 Score: 310
Period size: 80 Copynumber: 3.3 Consensus size: 79
51619349 TATTCGAATG
* * * *
51619359 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
* * *
51619424 ATTCGTGCGAGTTGCT
65 ATTTGTGCAAG-TACT
* * * *
51619440 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
51619505 TTTGTGCTAGCTACT
66 TTTGTGCAAG-TACT
* * *
51619520 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGC-
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
51619584 CTTGTGCAAGTAGTT
66 TTTGTGCAAGTA-CT
*
51619599 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
51619620 ATTACTTGAG
Statistics
Matches: 156, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
78 16 0.10
79 15 0.10
80 93 0.60
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCAAGTACT
Found at i:51619573 original size:120 final size:120
Alignment explanation
Indices: 51619359--51619619 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
51619349 TATTCGAATG
* * *
51619359 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGCTGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
51619424 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
51619480 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCT-ACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGCTGACTATAACCGGACTAAGAT-CCGAAGG
* * *
51619543 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
51619599 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
51619620 ATTACTTGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 55 0.45
121 33 0.27
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGCTGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:51621244 original size:23 final size:23
Alignment explanation
Indices: 51621218--51621269 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
51621208 CTCTCTTTTT
51621218 TTTTTCAATTTTTTGTCTT-TATC
1 TTTTTCAATTTTTTGTCTTGTA-C
* *
51621241 TTTTTCACTTTTTTTTCTTGTAC
1 TTTTTCAATTTTTTGTCTTGTAC
51621264 TTTTTC
1 TTTTTC
51621270 TTTCAACTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 24 0.92
24 2 0.08
ACGTcount: A:0.10, C:0.15, G:0.04, T:0.71
Consensus pattern (23 bp):
TTTTTCAATTTTTTGTCTTGTAC
Found at i:51632079 original size:21 final size:21
Alignment explanation
Indices: 51632055--51632094 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
51632045 TATGTTAAGC
* *
51632055 AGTTTAAATGATGGTTGAATA
1 AGTTGAAATCATGGTTGAATA
*
51632076 AGTTGAATTCATGGTTGAA
1 AGTTGAAATCATGGTTGAA
51632095 AGGTGTGAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.38
Consensus pattern (21 bp):
AGTTGAAATCATGGTTGAATA
Found at i:51633414 original size:40 final size:40
Alignment explanation
Indices: 51633357--51633549 Score: 264
Period size: 40 Copynumber: 4.8 Consensus size: 40
51633347 GTATGATATT
* *
51633357 TGGAATTGCATCCGGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTATATGC
*
51633397 TGGAATTGTATCTGGGCTTAAAGACCCACAGGCTATATGC
1 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTATATGC
* * *
51633437 TGGAAATGTATCCGGGCTTAAAGACCCACAGGCTATATGC
1 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTATATGC
* *
51633477 TGGAATTGTATCTGGGCATAAAGACCCGCAGGCT-TCGTGC
1 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTAT-ATGC
* * *
51633517 TGGAATGGTATTTGGG-TTAAAGACCCGTAGGCT
1 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCT
51633550 TGCGCTAGAA
Statistics
Matches: 138, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 16 0.12
40 122 0.88
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTATATGC
Found at i:51638992 original size:15 final size:15
Alignment explanation
Indices: 51638968--51638997 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51638958 AACAATCCCT
51638968 TAAATAAAACTTAAC
1 TAAATAAAACTTAAC
*
51638983 TAAATTAAACTTAAC
1 TAAATAAAACTTAAC
51638998 ACTTGCCGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAATAAAACTTAAC
Found at i:51642588 original size:40 final size:40
Alignment explanation
Indices: 51642490--51642752 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
51642480 TCCTCGTTCA
* * * ** *
51642490 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
51642529 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
51642569 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
51642609 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
51642649 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
51642689 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
51642729 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51642753 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:51650536 original size:40 final size:40
Alignment explanation
Indices: 51650436--51650700 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
51650426 GCTCCTCGTT
* * * *
51650436 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
51650476 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
51650515 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
51650555 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
51650595 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
51650635 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
51650676 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
51650701 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51650660 original size:80 final size:80
Alignment explanation
Indices: 51650403--51650700 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
51650393 AAATCACGTA
* ** * * *
51650403 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
51650465 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
51650481 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
51650544 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
51650561 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
51650625 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
51650641 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
51650701 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:51650709 original size:41 final size:41
Alignment explanation
Indices: 51650632--51650709 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
51650622 TTTGTATCTC
* * *
51650632 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
51650673 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
51650710 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:51655645 original size:28 final size:28
Alignment explanation
Indices: 51655613--51655726 Score: 131
Period size: 29 Copynumber: 4.0 Consensus size: 28
51655603 TACCTGTATC
* *
51655613 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
51655641 TGGCCCATTAGGCCCCAATCACCTAT-ATA
1 TGGCCCATTAGG-CCCAATCACAT-TCATA
* *
51655670 TGGCCCATTAGGCCTAAATCACATTTATA
1 TGGCCCATTAGGCC-CAATCACATTCATA
* *
51655699 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
51655727 ATCATGCTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
28 25 0.34
29 47 0.64
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:51655675 original size:57 final size:58
Alignment explanation
Indices: 51655604--51655713 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 58
51655594 AATTTCACAT
* * * *
51655604 ACCTGTATCTGGCCCATTAAGCC-CAATCATATTCATATGGCCCATTAGGCCCCAATC
1 ACCTATATATGGCCCATTAAGCCTAAATCACATTCATATGGCCCATTAGGCCCCAATC
* * *
51655661 ACCTATATATGGCCCATTAGGCCTAAATCACATTTATATGGCCCGTTAGGCCC
1 ACCTATATATGGCCCATTAAGCCTAAATCACATTCATATGGCCCATTAGGCCC
51655714 AGTCACATTC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 20 0.44
58 25 0.56
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.27
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAGCCTAAATCACATTCATATGGCCCATTAGGCCCCAATC
Found at i:51660823 original size:23 final size:22
Alignment explanation
Indices: 51660772--51660823 Score: 52
Period size: 23 Copynumber: 2.3 Consensus size: 22
51660762 ATCTCATATC
*
51660772 CAGTTAGATACAGAATCAAACT
1 CAGTTAGATACAGAAACAAACT
*
51660794 TATGTTAGATACAGATAACAGAA-T
1 CA-GTTAGATACAGA-AACA-AACT
51660818 CAGTTA
1 CAGTTA
51660824 AGCAGTACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
22 1 0.04
23 16 0.67
24 5 0.21
25 2 0.08
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.27
Consensus pattern (22 bp):
CAGTTAGATACAGAAACAAACT
Found at i:51661059 original size:14 final size:15
Alignment explanation
Indices: 51661040--51661068 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
51661030 CATTCCAGTC
51661040 ACAGATACAG-AATA
1 ACAGATACAGTAATA
51661054 ACAGATACAGTAATA
1 ACAGATACAGTAATA
51661069 TCATGCATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.55, C:0.14, G:0.14, T:0.17
Consensus pattern (15 bp):
ACAGATACAGTAATA
Found at i:51663111 original size:17 final size:18
Alignment explanation
Indices: 51663088--51663129 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
51663078 CAACAATCTA
* *
51663088 CCATTTCATATTTCATTT
1 CCATTTCACATCTCATTT
51663106 -CATTTCACATCTCATTT
1 CCATTTCACATCTCATTT
51663123 CCATTTC
1 CCATTTC
51663130 TCAACAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.21, C:0.29, G:0.00, T:0.50
Consensus pattern (18 bp):
CCATTTCACATCTCATTT
Found at i:51666650 original size:12 final size:14
Alignment explanation
Indices: 51666633--51666665 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
51666623 TTTTCTCCAG
51666633 AATGAAAAT-GA-A
1 AATGAAAATGGAGA
51666645 AATGAAAATGGAGA
1 AATGAAAATGGAGA
51666659 AATGAAA
1 AATGAAA
51666666 TCATTTGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.47
13 2 0.11
14 8 0.42
ACGTcount: A:0.64, C:0.00, G:0.21, T:0.15
Consensus pattern (14 bp):
AATGAAAATGGAGA
Found at i:51666677 original size:63 final size:64
Alignment explanation
Indices: 51666586--51666718 Score: 182
Period size: 63 Copynumber: 2.1 Consensus size: 64
51666576 AGGATCGGTG
*
51666586 AAATGGAGAAGTAGGAAACATTTGGAAATG-ATAAAGGTTTTCTCCAGAATGAAAATG-AAAATG
1 AAATGGAGAAG-AGGAAACATTTGGAAATGAAT-AAGGTTTTCTCCAAAATGAAAATGAAAAATG
51666649 A
64 A
* **
51666650 AAATGGAGAA-ATGAAATCATTTGGAAATGAATGTGGTTTTCTCCAAAATGAAAATGAAAAATGA
1 AAATGGAGAAGAGGAAA-CATTTGGAAATGAATAAGGTTTTCTCCAAAATGAAAATGAAAAATGA
51666714 AAATG
1 AAATG
51666719 ACCTGAAAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
62 5 0.08
63 33 0.53
64 24 0.39
ACGTcount: A:0.47, C:0.06, G:0.22, T:0.25
Consensus pattern (64 bp):
AAATGGAGAAGAGGAAACATTTGGAAATGAATAAGGTTTTCTCCAAAATGAAAATGAAAAATGA
Found at i:51666712 original size:13 final size:13
Alignment explanation
Indices: 51666694--51666719 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51666684 GGTTTTCTCC
51666694 AAAATGAAAATGA
1 AAAATGAAAATGA
51666707 AAAATGAAAATGA
1 AAAATGAAAATGA
51666720 CCTGAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAATGAAAATGA
Found at i:51672303 original size:41 final size:40
Alignment explanation
Indices: 51672258--51672335 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 40
51672248 AAATGATTAA
* *
51672258 GGTTTTCTCGAAAATTAAAATGAAAATTGAAAAATGAATGT
1 GGTTTTCTCCAAAATGAAAATGAAAA-TGAAAAATGAATGT
* *
51672299 GGTTTTTTCCAAAATGAAAATGAAAATGTAAAATGAA
1 GGTTTTCTCCAAAATGAAAATGAAAATGAAAAATGAA
51672336 AAATGAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
40 10 0.30
41 23 0.70
ACGTcount: A:0.47, C:0.05, G:0.17, T:0.31
Consensus pattern (40 bp):
GGTTTTCTCCAAAATGAAAATGAAAATGAAAAATGAATGT
Found at i:51672333 original size:13 final size:12
Alignment explanation
Indices: 51672309--51672345 Score: 56
Period size: 13 Copynumber: 2.9 Consensus size: 12
51672299 GGTTTTTTCC
51672309 AAAATGAAAATG
1 AAAATGAAAATG
51672321 AAAATGTAAAATG
1 AAAATG-AAAATG
51672334 AAAAATGAAAAT
1 -AAAATGAAAAT
51672346 AACTTGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 6 0.26
13 11 0.48
14 6 0.26
ACGTcount: A:0.68, C:0.00, G:0.14, T:0.19
Consensus pattern (12 bp):
AAAATGAAAATG
Found at i:51672360 original size:7 final size:6
Alignment explanation
Indices: 51672309--51672345 Score: 56
Period size: 6 Copynumber: 5.8 Consensus size: 6
51672299 GGTTTTTTCC
51672309 AAAATG AAAATG AAAATG TAAAATG AAAAATG AAAAT
1 AAAATG AAAATG AAAATG -AAAATG -AAAATG AAAAT
51672346 AACTTGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 17 0.59
7 12 0.41
ACGTcount: A:0.68, C:0.00, G:0.14, T:0.19
Consensus pattern (6 bp):
AAAATG
Found at i:51675280 original size:46 final size:47
Alignment explanation
Indices: 51675154--51675287 Score: 152
Period size: 46 Copynumber: 2.9 Consensus size: 47
51675144 TCGGGCGTTC
*
51675154 GCATCCATGAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT
1 GCATCCAT-AGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTT
* * *
51675204 ACATCTC-T--CGAACTCGGACTCAACTCAACGAGTTCGGA-C-ATTT
1 GCATC-CATAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT
51675247 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 GCATCCAT-AGTGAACTCGGACTCAACTCAACGAGTTCGGA
51675288 TGCCCAAATA
Statistics
Matches: 73, Mismatches: 6, Indels: 14
0.78 0.06 0.15
Matches are distributed among these distances:
42 1 0.01
43 8 0.11
44 1 0.01
46 29 0.40
47 28 0.38
50 5 0.07
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (47 bp):
GCATCCATAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT
Found at i:51675306 original size:46 final size:46
Alignment explanation
Indices: 51675163--51675306 Score: 120
Period size: 46 Copynumber: 3.1 Consensus size: 46
51675153 CGCATCCATG
* * * *
51675163 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCC
* *
51675211 --TCGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGT-GAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--C
*
51675256 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
51675302 AGTGA
1 AGTGA
51675307 CATGTCACTC
Statistics
Matches: 76, Mismatches: 9, Indels: 24
0.70 0.08 0.22
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
46 35 0.46
47 29 0.38
48 4 0.05
50 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
Found at i:51683466 original size:24 final size:25
Alignment explanation
Indices: 51683438--51683501 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
51683428 TCAACCAAAT
* * *
51683438 TCGCACACATAGTGCTA-ATTAAGC
1 TCGCACACATAGTGCCATACTAAAC
51683462 TCGCACACATAGTGCCATACTAAAC
1 TCGCACACATAGTGCCATACTAAAC
51683487 -CGCACACATAGTGCC
1 TCGCACACATAGTGCC
51683502 TGAAATTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (25 bp):
TCGCACACATAGTGCCATACTAAAC
Found at i:51683552 original size:24 final size:24
Alignment explanation
Indices: 51683525--51683574 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
51683515 CATGCATCGA
*
51683525 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* *
51683549 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
51683573 CA
1 CA
51683575 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:51683647 original size:94 final size:94
Alignment explanation
Indices: 51683530--51683905 Score: 716
Period size: 94 Copynumber: 4.0 Consensus size: 94
51683520 ATCGACATTC
* *
51683530 AAATCTGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
51683595 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
51683624 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
51683689 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
51683718 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
51683783 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
*
51683812 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
51683877 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
51683906 CGGTCACATT
Statistics
Matches: 278, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 278 1.00
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.30
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:51690379 original size:39 final size:39
Alignment explanation
Indices: 51690285--51690477 Score: 271
Period size: 39 Copynumber: 5.0 Consensus size: 39
51690275 CATGGTATTT
*
51690285 GAAATATATCCGGACATGAGGTCCGCAGGCTATAT-CTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATGTGCTG
* * *
51690323 GGAATATATCCGGACATGAGGTCCACAGGCTATGTGTTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATGTGCTG
*
51690362 GAAATATATCCGGACATGAGGTCTGCAGGCTATGTGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATGTGCTG
* * * **
51690401 GAAATATATCCGGACTTAAAGTCTACAGGCTATGTGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATGTGCTG
* *
51690440 GAAATATATCCGGACTTGAAGTCCGCAGGCTATGTGCT
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATGTGCT
51690478 AGAATGGTAC
Statistics
Matches: 139, Mismatches: 15, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
38 32 0.23
39 107 0.77
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (39 bp):
GAAATATATCCGGACATGAGGTCCGCAGGCTATGTGCTG
Found at i:51693709 original size:37 final size:37
Alignment explanation
Indices: 51693659--51693732 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
51693649 TAAGAACTTG
51693659 CCTGTTGAGTTTACTGAGTTTGTGATTAGAGTGTCAA
1 CCTGTTGAGTTTACTGAGTTTGTGATTAGAGTGTCAA
51693696 CCTGTTGAGTTTACTGAGTTTGTGATTAGAGTGTCAA
1 CCTGTTGAGTTTACTGAGTTTGTGATTAGAGTGTCAA
51693733 ACCCTTTAGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.22, C:0.11, G:0.27, T:0.41
Consensus pattern (37 bp):
CCTGTTGAGTTTACTGAGTTTGTGATTAGAGTGTCAA
Found at i:51698251 original size:42 final size:42
Alignment explanation
Indices: 51698164--51698318 Score: 152
Period size: 42 Copynumber: 3.7 Consensus size: 42
51698154 TGAGACCACA
* * *
51698164 TGTAAGACCATATCT-GAGATA-TGACATCAATATGAGACTAAG
1 TGTAAGACCATATCTAG-GATATTG-CATTAATATGAGATTACG
*
51698206 TGTAAGACCATATCTAGGATATTGCATTAATATGAGATTTCG
1 TGTAAGACCATATCTAGGATATTGCATTAATATGAGATTACG
* * * * * * * *
51698248 TGTAAGACTATAGCTGGGCTATCAGCATTGATACGAGATTACA
1 TGTAAGACCATATCTAGGATAT-TGCATTAATATGAGATTACG
*
51698291 TGTAAGACCATATCTAGGATATGGCATT
1 TGTAAGACCATATCTAGGATATTGCATT
51698319 GGTACGGTAC
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
42 56 0.61
43 36 0.39
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATTGCATTAATATGAGATTACG
Found at i:51701973 original size:23 final size:23
Alignment explanation
Indices: 51701947--51701993 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
51701937 AGCGATTAAG
*
51701947 ACTTTTGGATTTAAGCAAGACGT
1 ACTTTTGGATTTAAGCAAAACGT
*
51701970 ACTTTTGGATTTAATCAAAACGT
1 ACTTTTGGATTTAAGCAAAACGT
51701993 A
1 A
51701994 GATTGGTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (23 bp):
ACTTTTGGATTTAAGCAAAACGT
Found at i:51709009 original size:27 final size:27
Alignment explanation
Indices: 51708971--51709024 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
51708961 ATTTGAGTTC
51708971 AAAAGGGCATGAAAAAGTCTATATATT
1 AAAAGGGCATGAAAAAGTCTATATATT
* *
51708998 AAAAGGGCATGAAAAATTTTATATATT
1 AAAAGGGCATGAAAAAGTCTATATATT
51709025 TTCGTGTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.48, C:0.06, G:0.17, T:0.30
Consensus pattern (27 bp):
AAAAGGGCATGAAAAAGTCTATATATT
Found at i:51715462 original size:22 final size:22
Alignment explanation
Indices: 51715437--51715478 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
51715427 TGCAAAATTG
51715437 ATAAT-AAT-TAA-TATATATT
1 ATAATAAATATAATTATATATT
51715456 ATAATAAATATAATTATATATT
1 ATAATAAATATAATTATATATT
51715478 A
1 A
51715479 GTTATTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 3 0.15
21 3 0.15
22 9 0.45
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATAATAAATATAATTATATATT
Found at i:51715465 original size:16 final size:15
Alignment explanation
Indices: 51715440--51715473 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
51715430 AAAATTGATA
*
51715440 ATAATTAATATATATT
1 ATAATAAATATA-ATT
51715456 ATAATAAATATAATT
1 ATAATAAATATAATT
51715471 ATA
1 ATA
51715474 TATTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Done.