Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 170 of 187
Found at i:51717387 original size:650 final size:650
Alignment explanation
Indices: 51716146--51717442 Score: 2504
Period size: 650 Copynumber: 2.0 Consensus size: 650
51716136 GTTCATAAAT
51716146 GTGACGCTATTCTAGACACAATCAGTAAAAATTTGGAATGTCTAAAGTACCAAAATTGAGCGTTG
1 GTGACGCTATTCTAGACACAATCAGTAAAAATTTGGAATGTCTAAAGTACCAAAATTGAGCGTTG
* *
51716211 GAATCGTAATTGGGGAGATAAGGTTATTAGCCTCGTCTTCGTGCAAATAATGCTCAATGTGTCTC
66 GAATCGTAATTGGAGAGATAAGGTTATCAGCCTCGTCTTCGTGCAAATAATGCTCAATGTGTCTC
51716276 TTGTGCAAATGATGAGACTTTTGTTAATAATGACTATGAGCAACATTTTTTAACTAAATCAAAGT
131 TTGTGCAAATGATGAGACTTTTGTTAATAATGACTATGAGCAACATTTTTTAACTAAATCAAAGT
51716341 TCTCAATTCTAGAATTTCATGGAAAGAATGATCAAGAGACTTATTATGATGGAAAAAATGATCAC
196 TCTCAATTCTAGAATTTCATGGAAAGAATGATCAAGAGACTTATTATGATGGAAAAAATGATCAC
51716406 AAATTAGTTTGTCAATTCAATGGGCGATGGTCAAACGAAAGGAGGAATACGATTGAGCTATCACC
261 AAATTAGTTTGTCAATTCAATGGGCGATGGTCAAACGAAAGGAGGAATACGATTGAGCTATCACC
51716471 TTTTGTGCAATGTTATTGGTGTAGTTCAAAAGATCATAAAGGTTTCCAATGTCCAATTCAATATC
326 TTTTGTGCAATGTTATTGGTGTAGTTCAAAAGATCATAAAGGTTTCCAATGTCCAATTCAATATC
* *
51716536 CAACTAGAGAACAAAGTAAGTATGACTTTGTACCTTTTGTTGACTCATATTCTAGCGGAAAAGAG
391 CAACTAGAGAACAAAGTAAGTACGACTTTGTACCTTTTATTGACTCATATTCTAGCGGAAAAGAG
51716601 ATTTGTGATGGCAAACTTGGTGAACCAGAAAAAGATGATAGCAAGAATTTTTTCCTTGAATCTAT
456 ATTTGTGATGGCAAACTTGGTGAACCAGAAAAAGATGATAGCAAGAATTTTTTCCTTGAATCTAT
*
51716666 TAAGTTAGATGAGATAGAAACGTCATGTTCTCCTACTGAGATGTATTGTACTGAATTGTATATTC
521 TAAGTTAGATGAGATAGAAACGTCATGTTCTCCTACTGAGATATATTGTACTGAATTGTATATTC
*
51716731 ATAATACTTGTGAAGGGGATATGGGAAGTGAGGCAAAATCATGTGAAAAGACCTAGAGAAAAAAC
586 ATAATACTTGTGAAGAGGATATGGGAAGTGAGGCAAAATCATGTGAAAAGACCTAGAGAAAAAAC
51716796 GTGACGCTATTCTAGACACAATCAGTAAAAATTTGGAATGTCTAAAGTACCAAAATTGAGCGTTG
1 GTGACGCTATTCTAGACACAATCAGTAAAAATTTGGAATGTCTAAAGTACCAAAATTGAGCGTTG
51716861 GAATCGTAATTGGAGAGATAAGGTTATCAGCCTCGTCTTCGTGCAAATAATGCTCAATGTGTCTC
66 GAATCGTAATTGGAGAGATAAGGTTATCAGCCTCGTCTTCGTGCAAATAATGCTCAATGTGTCTC
51716926 TTGTGCAAATGATGAGACTTTTGTTAATAATGACTATGAGCAACATTTTTTAACTAAATCAAAGT
131 TTGTGCAAATGATGAGACTTTTGTTAATAATGACTATGAGCAACATTTTTTAACTAAATCAAAGT
51716991 TCTCAATTCTAGAATTTCATGGAAAGAATGATCAAGAGACTTATTATGATGGAAAAAATGATCAC
196 TCTCAATTCTAGAATTTCATGGAAAGAATGATCAAGAGACTTATTATGATGGAAAAAATGATCAC
51717056 AAATTAGTTTGTCAATTCAATGGGCGATGGTCAAACGAAAGGAGGAATACGATTGAGCTATCACC
261 AAATTAGTTTGTCAATTCAATGGGCGATGGTCAAACGAAAGGAGGAATACGATTGAGCTATCACC
51717121 TTTTGTGCAATGTTATTGGTGTAGTTCAAAAGATCATAAAGGTTTCCAATGTCCAATTCAATATC
326 TTTTGTGCAATGTTATTGGTGTAGTTCAAAAGATCATAAAGGTTTCCAATGTCCAATTCAATATC
51717186 CAACTAGAGAACAAAGTAAGTACGACTTTGTACCTTTTATTGACTCATATTCTAGCGGAAAAGAG
391 CAACTAGAGAACAAAGTAAGTACGACTTTGTACCTTTTATTGACTCATATTCTAGCGGAAAAGAG
* *
51717251 ATTTGTGATGGCAAACTTGGTGAACCAGAAAAAGATGATAGCGAGAATTTTTTCCTTGAATCTCT
456 ATTTGTGATGGCAAACTTGGTGAACCAGAAAAAGATGATAGCAAGAATTTTTTCCTTGAATCTAT
* *
51717316 TAAGTTAGATGATATAGAAACGTCATGTTCTCCTACTGAGATATATTGTATTGAATTGTATATTC
521 TAAGTTAGATGAGATAGAAACGTCATGTTCTCCTACTGAGATATATTGTACTGAATTGTATATTC
51717381 ATAATACTTGTGAAGAGGATATGGGAAGTGAGGCAAAATCATGTGAAAAGACCTAGAGAAAA
586 ATAATACTTGTGAAGAGGATATGGGAAGTGAGGCAAAATCATGTGAAAAGACCTAGAGAAAA
51717443 GAGACATTGA
Statistics
Matches: 637, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
650 637 1.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (650 bp):
GTGACGCTATTCTAGACACAATCAGTAAAAATTTGGAATGTCTAAAGTACCAAAATTGAGCGTTG
GAATCGTAATTGGAGAGATAAGGTTATCAGCCTCGTCTTCGTGCAAATAATGCTCAATGTGTCTC
TTGTGCAAATGATGAGACTTTTGTTAATAATGACTATGAGCAACATTTTTTAACTAAATCAAAGT
TCTCAATTCTAGAATTTCATGGAAAGAATGATCAAGAGACTTATTATGATGGAAAAAATGATCAC
AAATTAGTTTGTCAATTCAATGGGCGATGGTCAAACGAAAGGAGGAATACGATTGAGCTATCACC
TTTTGTGCAATGTTATTGGTGTAGTTCAAAAGATCATAAAGGTTTCCAATGTCCAATTCAATATC
CAACTAGAGAACAAAGTAAGTACGACTTTGTACCTTTTATTGACTCATATTCTAGCGGAAAAGAG
ATTTGTGATGGCAAACTTGGTGAACCAGAAAAAGATGATAGCAAGAATTTTTTCCTTGAATCTAT
TAAGTTAGATGAGATAGAAACGTCATGTTCTCCTACTGAGATATATTGTACTGAATTGTATATTC
ATAATACTTGTGAAGAGGATATGGGAAGTGAGGCAAAATCATGTGAAAAGACCTAGAGAAAAAAC
Found at i:51722348 original size:124 final size:124
Alignment explanation
Indices: 51722128--51722493 Score: 678
Period size: 124 Copynumber: 3.0 Consensus size: 124
51722118 TGAACGATAA
* * * *
51722128 TGATTCGACGGCGATATGACATTCGAAAATCCCGGTTGAACCTTAGGAATAGTTTAGGATGCTAG
1 TGATTTGACGACGATATGACATTCGAAAATCCCGGTTGAACCCTAGGAATAGTTTAGTATGCTAG
51722193 TGACAAGTCATTAGGGGATACATTGAGTTGCTTCGGGCCATGATATAGCACTTCTAGTG
66 TGACAAGTCATTAGGGGATACATTGAGTTGCTTCGGGCCATGATATAGCACTTCTAGTG
51722252 TGATTTGACGACGATATGACATTCGAAAATCCCGGTTGAACCCTAGGAATAGTTTAGTATGCTAG
1 TGATTTGACGACGATATGACATTCGAAAATCCCGGTTGAACCCTAGGAATAGTTTAGTATGCTAG
51722317 TGACAAGTCATTAGGGGATACATTGAGTTGCTTCGGGCCATGATATAGCACTTCTAGTG
66 TGACAAGTCATTAGGGGATACATTGAGTTGCTTCGGGCCATGATATAGCACTTCTAGTG
* *
51722376 TGATTTGAGGACGATGTGACATTCGAAAATCCCGGTTGAACCCTAGGAATAGTTTAGTATGCTAG
1 TGATTTGACGACGATATGACATTCGAAAATCCCGGTTGAACCCTAGGAATAGTTTAGTATGCTAG
51722441 TGACAAGTCATTAGGGGATACATTGAGTTGCTTCGGGCCATGATATAGCACTT
66 TGACAAGTCATTAGGGGATACATTGAGTTGCTTCGGGCCATGATATAGCACTT
51722494 TTGGTGCGAG
Statistics
Matches: 236, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 236 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (124 bp):
TGATTTGACGACGATATGACATTCGAAAATCCCGGTTGAACCCTAGGAATAGTTTAGTATGCTAG
TGACAAGTCATTAGGGGATACATTGAGTTGCTTCGGGCCATGATATAGCACTTCTAGTG
Found at i:51732739 original size:9 final size:10
Alignment explanation
Indices: 51732702--51732737 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
51732692 TTTATATATA
51732702 TTTTTAGAAT
1 TTTTTAGAAT
51732712 TTTTTAGAATT
1 TTTTTAGAA-T
51732723 TTTTTA-AAT
1 TTTTTAGAAT
51732732 TTTTTA
1 TTTTTA
51732738 AAAATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 7 0.28
10 11 0.44
11 7 0.28
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (10 bp):
TTTTTAGAAT
Found at i:51733651 original size:20 final size:20
Alignment explanation
Indices: 51733628--51733671 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
51733618 GAAAAAAATC
51733628 AAATCCAA-ATTAAAATATTA
1 AAATCCAAGA-TAAAATATTA
* *
51733648 AAATTCAAGATAAAATCTTA
1 AAATCCAAGATAAAATATTA
51733668 AAAT
1 AAAT
51733672 TTGATAAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 20 0.95
21 1 0.05
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (20 bp):
AAATCCAAGATAAAATATTA
Found at i:51736395 original size:28 final size:28
Alignment explanation
Indices: 51736362--51736420 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
51736352 TTTCTTTTGA
51736362 TTAGCAAAATCGAGAAATTTCCTAACTC
1 TTAGCAAAATCGAGAAATTTCCTAACTC
51736390 TTAGCAAAATCGAGAAATTTCCTAACTC
1 TTAGCAAAATCGAGAAATTTCCTAACTC
51736418 TTA
1 TTA
51736421 CTCTAATTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (28 bp):
TTAGCAAAATCGAGAAATTTCCTAACTC
Found at i:51740076 original size:34 final size:34
Alignment explanation
Indices: 51740037--51740105 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
51740027 GCTTTATAGC
51740037 TTAGTAAGACCGTATGAAAATAATAAACAATTTA
1 TTAGTAAGACCGTATGAAAATAATAAACAATTTA
*
51740071 TTAGTAAGACCGTATGACAATAATAAACAATTTA
1 TTAGTAAGACCGTATGAAAATAATAAACAATTTA
51740105 T
1 T
51740106 CAACTTGTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (34 bp):
TTAGTAAGACCGTATGAAAATAATAAACAATTTA
Found at i:51741784 original size:40 final size:40
Alignment explanation
Indices: 51741738--51741828 Score: 155
Period size: 40 Copynumber: 2.3 Consensus size: 40
51741728 TGGGGCTTCC
*
51741738 AATCATTCTTTGAAGAATCTATATTTGATATGGCTGATAA
1 AATCATTCTTTGAAGAATCCATATTTGATATGGCTGATAA
*
51741778 AATCATTCTTTGAATAATCCATATTTGATATGGCTGATAA
1 AATCATTCTTTGAAGAATCCATATTTGATATGGCTGATAA
*
51741818 AATCTTTCTTT
1 AATCATTCTTT
51741829 TTTAGCAATA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (40 bp):
AATCATTCTTTGAAGAATCCATATTTGATATGGCTGATAA
Found at i:51742306 original size:50 final size:50
Alignment explanation
Indices: 51742231--51742330 Score: 164
Period size: 50 Copynumber: 2.0 Consensus size: 50
51742221 AAGAACTTAC
* *
51742231 AATGGATATTATGATATCATTCTTTCCAAGAATCGTTACTCCGAGGGCCT
1 AATGGATATTATGATATCAGTCTTTCCAAGAATCATTACTCCGAGGGCCT
* *
51742281 AATGGATATTATGATATCAGTCTTTCCAAGAATCATTACTCTGGGGGCCT
1 AATGGATATTATGATATCAGTCTTTCCAAGAATCATTACTCCGAGGGCCT
51742331 CTGATACCAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (50 bp):
AATGGATATTATGATATCAGTCTTTCCAAGAATCATTACTCCGAGGGCCT
Found at i:51746229 original size:777 final size:777
Alignment explanation
Indices: 51744735--51746290 Score: 3112
Period size: 777 Copynumber: 2.0 Consensus size: 777
51744725 AAACAAATAT
51744735 ATAAATGTTTTATATGTGATGAAGAAGGTCATATAGCACCAAATTGTCCTAATAAAGGAAAAAAG
1 ATAAATGTTTTATATGTGATGAAGAAGGTCATATAGCACCAAATTGTCCTAATAAAGGAAAAAAG
51744800 TGCTAAAAAATGATTAAAAGTCTTGAAGAACAAGATTTAAAAATCTGTTATGAAGAGGAAATAAA
66 TGCTAAAAAATGATTAAAAGTCTTGAAGAACAAGATTTAAAAATCTGTTATGAAGAGGAAATAAA
51744865 TCCCGAAGAAATATTATATGAATTAATATCAGAAACAGATTCTGATTCAGATAATGAAGAATATT
131 TCCCGAAGAAATATTATATGAATTAATATCAGAAACAGATTCTGATTCAGATAATGAAGAATATT
51744930 TATTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCCT
196 TATTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCCT
51744995 CTTAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACTG
261 CTTAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACTG
51745060 TATTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATT
326 TATTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATT
51745125 TCTTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCT
391 TCTTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCT
51745190 CCGATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGG
456 CCGATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGG
51745255 GTATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTT
521 GTATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTT
51745320 TTCTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGC
586 TTCTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGC
51745385 CTCTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACAC
651 CTCTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACAC
51745450 TGTTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACC
716 TGTTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACC
51745512 ATAAATGTTTTATATGTGATGAAGAAGGTCATATAGCACCAAATTGTCCTAATAAAGGAAAAAAG
1 ATAAATGTTTTATATGTGATGAAGAAGGTCATATAGCACCAAATTGTCCTAATAAAGGAAAAAAG
51745577 TGCTAAAAAATGATTAAAAGTCTTGAAGAACAAGATTTAAAAATCTGTTATGAAGAGGAAATAAA
66 TGCTAAAAAATGATTAAAAGTCTTGAAGAACAAGATTTAAAAATCTGTTATGAAGAGGAAATAAA
51745642 TCCCGAAGAAATATTATATGAATTAATATCAGAAACAGATTCTGATTCAGATAATGAAGAATATT
131 TCCCGAAGAAATATTATATGAATTAATATCAGAAACAGATTCTGATTCAGATAATGAAGAATATT
51745707 TATTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCCT
196 TATTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCCT
51745772 CTTAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACTG
261 CTTAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACTG
51745837 TATTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATT
326 TATTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATT
51745902 TCTTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCT
391 TCTTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCT
51745967 CCGATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGG
456 CCGATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGG
51746032 GTATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTT
521 GTATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTT
51746097 TTCTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGC
586 TTCTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGC
51746162 CTCTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACAC
651 CTCTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACAC
51746227 TGTTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACC
716 TGTTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACC
51746289 AT
1 AT
51746291 TTCATGCATT
Statistics
Matches: 779, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
777 779 1.00
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.40
Consensus pattern (777 bp):
ATAAATGTTTTATATGTGATGAAGAAGGTCATATAGCACCAAATTGTCCTAATAAAGGAAAAAAG
TGCTAAAAAATGATTAAAAGTCTTGAAGAACAAGATTTAAAAATCTGTTATGAAGAGGAAATAAA
TCCCGAAGAAATATTATATGAATTAATATCAGAAACAGATTCTGATTCAGATAATGAAGAATATT
TATTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCCT
CTTAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACTG
TATTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATT
TCTTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCT
CCGATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGG
GTATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTT
TTCTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGC
CTCTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACAC
TGTTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACC
Found at i:51747358 original size:922 final size:911
Alignment explanation
Indices: 51745644--51749324 Score: 5605
Period size: 922 Copynumber: 4.0 Consensus size: 911
51745634 GAAATAAATC
*
51745644 CCGAAGAAATATTATATGAATTAATATCAGAAACAGATTCTGATTCAGATAATGAAGAATATTTA
1 CCGAAGAAATATTATATGAATTAATACCAGAAACAGATTCTGATTCAGATAATGAAGAATATTTA
51745709 TTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCCTCT
66 TTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCCTCT
51745774 TAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACTGTA
131 TAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACTGTA
51745839 TTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATTTC
196 TTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATTTC
51745904 TTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCTCC
261 TTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCTCC
51745969 GATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGGGT
326 GATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGGGT
51746034 ATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTTTT
391 ATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTTTT
51746099 CTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGCCT
456 CTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGCCT
51746164 CTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACACTG
521 CTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACACTG
51746229 TTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCATTTC
586 TTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCATTTC
51746294 ATGCATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATCATA
651 ATGCATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATCATA
51746359 ATTCATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAGTGT
716 ATTCATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAGTGT
51746424 ACATGCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGGACT
781 ACATGCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGGACT
** * *
51746489 TTCATCACAGTGCTAAAAAATG-ATTA-AAAGTCTTGAAGAAC-AAGATTTAAAAATCTGTTATG
846 TTCATCAC-GT-CT----AATGTATTACCCA---TTGAA-AACTAAGA-AT-AAAAT-TG-GAT-
51746551 A-A-GAGGAAATAAAT-C-
896 ACACG-GGAAAT--ATGCA
*
51746566 CCGAAGAAATATTATATGAATTAATATCAGAAACAGATTCTGATTCAGATAATGAAGAATATTTA
1 CCGAAGAAATATTATATGAATTAATACCAGAAACAGATTCTGATTCAGATAATGAAGAATATTTA
51746631 TTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCCTCT
66 TTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCCTCT
51746696 TAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACTGTA
131 TAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACTGTA
51746761 TTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATTTC
196 TTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATTTC
51746826 TTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCTCC
261 TTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCTCC
51746891 GATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGGGT
326 GATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGGGT
51746956 ATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTTTT
391 ATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTTTT
51747021 CTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGCCT
456 CTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGCCT
51747086 CTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACACTG
521 CTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACACTG
51747151 TTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCATTTC
586 TTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCATTTC
51747216 ATGCATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATCATA
651 ATGCATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATCATA
51747281 ATTCATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAGTGT
716 ATTCATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAGTGT
51747346 ACATGCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGGACT
781 ACATGCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGGACT
* * ** ** * *
51747411 TTCATCACGTCTATTGTATTACCCATTGAACACTCGGAATACTATTGGATACACGGGAAGTTTGC
846 TTCATCACGTCTAATGTATTACCCATTGAAAACTAAGAATAAAATTGGATACACGGGAAATATGC
51747476 A
911 A
* *** * * * * * * * * ** * *
51747477 CCTAAG---TGCCATGT-AA-GAA-GCCAG-AGC-TA-CCTCATACTATG-TAATGCTCGCATTT
1 CCGAAGAAATATTATATGAATTAATACCAGAAACAGATTCTGATTC-A-GATAATG-AAG-AATA
51747532 TGTTATTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAAT
62 T-TTATTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAAT
51747597 CCTCTTAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGA
126 CCTCTTAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGA
51747662 CTGTATTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATAT
191 CTGTATTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATAT
51747727 ATTTCTTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCT
256 ATTTCTTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCT
51747792 TCTCCGATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAAT
321 TCTCCGATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAAT
51747857 GGGGTATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTC
386 GGGGTATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTC
51747922 TTTTTCTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTC
451 TTTTTCTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTC
51747987 AGCCTCTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAA
516 AGCCTCTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAA
51748052 CACTGTTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACC
581 CACTGTTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACC
51748117 ATTTCATGCATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAA
646 ATTTCATGCATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAA
51748182 TCATAATTCATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTT
711 TCATAATTCATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTT
51748247 AGTGTACATGCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTG
776 AGTGTACATGCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTG
* * ** ** *
51748312 GGACTTTCATCACGTCTATTGTATTACCCATTGAACACTCGGAATACTATTGGATACACGGGAAG
841 GGACTTTCATCACGTCTAATGTATTACCCATTGAAAACTAAGAATAAAATTGGATACACGGGAAA
*
51748377 TTTGCA
906 TATGCA
* **** ** ** * * * * *
51748383 CCTAAGTGCCATGTA-A-GAAGCCAGAGCTACCTCATACTATGTAATGCTCGCATTTTGAGCTAC
1 CCGAAGAAATAT-TATATGAA-TTA-A--TACCAGAAAC-A-G--ATTCT-G-A--TTCAGATAA
* * * * * * * *
51748446 TCACGGACCTATTCA-TCA-G-TT-A-GTACCCGGATCCCA-TAGCACTATCATGTAACACTTGC
53 TGA-AGA-ATATTTATTTATGTTTAATGTA---GGA----AGTA--ATTATCATAT-A-TC-TG-
* * * ** *** ** ** ** * ** ** *
51748505 TAATTGA-GCTACTCATGGATCTGTACACAAAGTCAGCACCTGGACCCATACAGCGTTGA-CAT-
103 -ACTTGAGGGTA-T--T---TCTTTTTA-ATCCTC-TTAATTTTA-TC-TTTA--GTAAATAATG
* * * * * * * * * *
51748567 GAAATGCTCGCTCAA-CGA-GT-TACTCATGGGTTTGGTC-AC-G-A-AGTCACTAATTTTCTCT
155 GAATTTCT-G-TTAATCCACCTCTAGT-AT--CTTTAG-CGACTGTATTGCCACTAATTTTCTCT
51748625 CTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATTTCTTTTTTAGAAATATGATT
214 CTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATTTCTTTTTTAGAAATATGATT
51748690 TTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCTCCGATTAAATTTCCTAATTT
279 TTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCTCCGATTAAATTTCCTAATTT
51748755 TATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGGGTATTTCAAAATTATTCTAA
344 TATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGGGTATTTCAAAATTATTCTAA
51748820 CTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTTTTCTTACATCGTTTCTTCTA
409 CTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTTTTCTTACATCGTTTCTTCTA
51748885 TGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGCCTCTAACTCAATTTCCACAA
474 TGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGCCTCTAACTCAATTTCCACAA
51748950 TTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACACTGTTTTGGTACAATATAATG
539 TTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACACTGTTTTGGTACAATATAATG
51749015 ATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCATTTCATGCATTCCATGTTCAAA
604 ATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCATTTCATGCATTCCATGTTCAAA
51749080 TGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATCATAATTCATACATCTTAGCTC
669 TGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATCATAATTCATACATCTTAGCTC
51749145 ACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAGTGTACATGCCTGTACTCATCG
734 ACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAGTGTACATGCCTGTACTCATCG
*
51749210 AAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGGACTTTCATCACGTCTATTGTA
799 AAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGGACTTTCATCACGTCTAATGTA
* ** ** * *
51749275 TTACCCATTGAACACTCGGAATACTATTGGATACACGGGAAGTTTGCA
864 TTACCCATTGAAAACTAAGAATAAAATTGGATACACGGGAAATATGCA
51749323 CC
1 CC
51749325 TAAGTGCCAT
Statistics
Matches: 2604, Mismatches: 86, Indels: 120
0.93 0.03 0.04
Matches are distributed among these distances:
902 5 0.00
903 7 0.00
904 4 0.00
905 6 0.00
906 857 0.33
907 2 0.00
908 4 0.00
909 3 0.00
910 3 0.00
911 14 0.01
912 4 0.00
913 3 0.00
914 3 0.00
915 9 0.00
916 4 0.00
917 4 0.00
918 1 0.00
919 3 0.00
920 3 0.00
921 5 0.00
922 859 0.33
923 2 0.00
924 5 0.00
925 9 0.00
926 2 0.00
927 8 0.00
928 1 0.00
929 1 0.00
930 2 0.00
931 3 0.00
932 6 0.00
934 1 0.00
937 5 0.00
938 3 0.00
939 3 0.00
940 719 0.28
941 12 0.00
942 6 0.00
943 12 0.00
944 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (911 bp):
CCGAAGAAATATTATATGAATTAATACCAGAAACAGATTCTGATTCAGATAATGAAGAATATTTA
TTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCCTCT
TAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACTGTA
TTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATTTC
TTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCTCC
GATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGGGT
ATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTTTT
CTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGCCT
CTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACACTG
TTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCATTTC
ATGCATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATCATA
ATTCATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAGTGT
ACATGCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGGACT
TTCATCACGTCTAATGTATTACCCATTGAAAACTAAGAATAAAATTGGATACACGGGAAATATGC
A
Found at i:51748379 original size:906 final size:906
Alignment explanation
Indices: 51745706--51749379 Score: 5954
Period size: 906 Copynumber: 4.0 Consensus size: 906
51745696 TGAAGAATAT
51745706 TTATTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCC
1 TTATTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCC
51745771 TCTTAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACT
66 TCTTAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACT
51745836 GTATTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATAT
131 GTATTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATAT
51745901 TTCTTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTC
196 TTCTTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTC
51745966 TCCGATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGG
261 TCCGATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGG
51746031 GGTATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTT
326 GGTATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTT
51746096 TTTCTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAG
391 TTTCTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAG
51746161 CCTCTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACA
456 CCTCTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACA
51746226 CTGTTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCAT
521 CTGTTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCAT
51746291 TTCATGCATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATC
586 TTCATGCATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATC
51746356 ATAATTCATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAG
651 ATAATTCATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAG
51746421 TGTACATGCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGG
716 TGTACATGCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGG
* ** * ** * ** *
51746486 ACTTTCATCACAGTGCTAAAAAATG-ATTA-AAAGTCTTGAAGAAC-AAGATTTAAAAATCTGTT
781 ACTTTCATCAC-GT-CT----ATTGTATTACCCA---TTGAA-CACTCGGA-AT-ACTAT-TG-G
* * * *** * * ** * * * *
51746548 ATGA-A-GAGGAAATAAAT-C-CCGAAGAAATATTATATGAATTAATATCAGAAACAGATTCTGA
832 AT-ACACG-GGAAGT--TTGCACCTAAG---TGCCATGT-AA-GAA-GCCAG-AGC-TA-CCTCA
* ** * *
51746609 TTC-A-GATAATG-AAG-AATAT-
884 TACTATG-TAATGCTCGCATTTTG
51746628 TTATTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCC
1 TTATTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCC
51746693 TCTTAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACT
66 TCTTAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACT
51746758 GTATTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATAT
131 GTATTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATAT
51746823 TTCTTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTC
196 TTCTTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTC
51746888 TCCGATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGG
261 TCCGATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGG
51746953 GGTATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTT
326 GGTATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTT
51747018 TTTCTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAG
391 TTTCTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAG
51747083 CCTCTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACA
456 CCTCTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACA
51747148 CTGTTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCAT
521 CTGTTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCAT
51747213 TTCATGCATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATC
586 TTCATGCATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATC
51747278 ATAATTCATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAG
651 ATAATTCATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAG
51747343 TGTACATGCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGG
716 TGTACATGCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGG
51747408 ACTTTCATCACGTCTATTGTATTACCCATTGAACACTCGGAATACTATTGGATACACGGGAAGTT
781 ACTTTCATCACGTCTATTGTATTACCCATTGAACACTCGGAATACTATTGGATACACGGGAAGTT
51747473 TGCACCTAAGTGCCATGTAAGAAGCCAGAGCTACCTCATACTATGTAATGCTCGCATTTTG
846 TGCACCTAAGTGCCATGTAAGAAGCCAGAGCTACCTCATACTATGTAATGCTCGCATTTTG
51747534 TTATTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCC
1 TTATTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCC
51747599 TCTTAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACT
66 TCTTAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACT
51747664 GTATTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATAT
131 GTATTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATAT
51747729 TTCTTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTC
196 TTCTTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTC
51747794 TCCGATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGG
261 TCCGATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGG
51747859 GGTATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTT
326 GGTATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTT
51747924 TTTCTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAG
391 TTTCTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAG
51747989 CCTCTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACA
456 CCTCTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACA
51748054 CTGTTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCAT
521 CTGTTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCAT
51748119 TTCATGCATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATC
586 TTCATGCATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATC
51748184 ATAATTCATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAG
651 ATAATTCATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAG
51748249 TGTACATGCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGG
716 TGTACATGCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGG
51748314 ACTTTCATCACGTCTATTGTATTACCCATTGAACACTCGGAATACTATTGGATACACGGGAAGTT
781 ACTTTCATCACGTCTATTGTATTACCCATTGAACACTCGGAATACTATTGGATACACGGGAAGTT
51748379 TGCACCTAAGTGCCATGTAAGAAGCCAGAGCTACCTCATACTATGTAATGCTCGCATTTTGAG
846 TGCACCTAAGTGCCATGTAAGAAGCCAGAGCTACCTCATACTATGTAATGCTCGCATTTT--G
* * * * * * ** *** ** * * * ***
51748442 CTACTCACGGACCTATTCAT-CAGTTAGTACCCGGATCCCATAGC--ACTATCA-TGTAACACTT
1 TTATTTA-TG---T-TTAATGTAGGAAGTA--ATTATCATATATCTGACT-TGAGGGTATTTCTT
** * * ** * **
51748503 GCTAATTGAGCTAC-TCA-TGGATCTGTACACAAAGTCAGCACCTGGACCCATACAGCGTTGACA
58 TTTAA-T--CCT-CTTAATTTTATCTTTA-GTAAA-T-A--A--TGGA---AT------TT--C-
* * * * * * *
51748566 TG-AAATGCTCGCTCAACGAGTTACTCATGGGTTTG-GTCAC-G-A-AGTCACTAATTTTCTCTC
100 TGTTAAT-C-CAC-C-TCTAG-TA-TC-T---TTAGCG--ACTGTATTGCCACTAATTTTCTCTC
51748626 TATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATTTCTTTTTTAGAAATATGATTT
153 TATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATTTCTTTTTTAGAAATATGATTT
51748691 TTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCTCCGATTAAATTTCCTAATTTT
218 TTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCTCCGATTAAATTTCCTAATTTT
51748756 ATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGGGTATTTCAAAATTATTCTAAC
283 ATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGGGTATTTCAAAATTATTCTAAC
51748821 TCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTTTTCTTACATCGTTTCTTCTAT
348 TCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTTTTCTTACATCGTTTCTTCTAT
51748886 GTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGCCTCTAACTCAATTTCCACAAT
413 GTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGCCTCTAACTCAATTTCCACAAT
51748951 TTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACACTGTTTTGGTACAATATAATGA
478 TTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACACTGTTTTGGTACAATATAATGA
51749016 TAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCATTTCATGCATTCCATGTTCAAAT
543 TAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCATTTCATGCATTCCATGTTCAAAT
51749081 GCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATCATAATTCATACATCTTAGCTCA
608 GCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATCATAATTCATACATCTTAGCTCA
51749146 CCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAGTGTACATGCCTGTACTCATCGA
673 CCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAGTGTACATGCCTGTACTCATCGA
51749211 AATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGGACTTTCATCACGTCTATTGTAT
738 AATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGGACTTTCATCACGTCTATTGTAT
51749276 TACCCATTGAACACTCGGAATACTATTGGATACACGGGAAGTTTGCACCTAAGTGCCATGTAAGA
803 TACCCATTGAACACTCGGAATACTATTGGATACACGGGAAGTTTGCACCTAAGTGCCATGTAAGA
51749341 AGCCAGAGCTACCTCATACTATGTAATGCTCGCATTTTG
868 AGCCAGAGCTACCTCATACTATGTAATGCTCGCATTTTG
51749380 AGCTACTCAC
Statistics
Matches: 2631, Mismatches: 64, Indels: 98
0.94 0.02 0.04
Matches are distributed among these distances:
902 5 0.00
903 7 0.00
904 4 0.00
905 6 0.00
906 907 0.34
907 2 0.00
908 9 0.00
909 2 0.00
910 2 0.00
911 13 0.00
912 22 0.01
913 10 0.00
914 17 0.01
915 14 0.01
916 5 0.00
917 5 0.00
918 1 0.00
919 1 0.00
920 2 0.00
921 6 0.00
922 791 0.30
924 2 0.00
930 2 0.00
932 4 0.00
933 3 0.00
934 2 0.00
935 1 0.00
936 3 0.00
937 2 0.00
938 3 0.00
939 1 0.00
940 769 0.29
941 2 0.00
942 4 0.00
943 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.39
Consensus pattern (906 bp):
TTATTTATGTTTAATGTAGGAAGTAATTATCATATATCTGACTTGAGGGTATTTCTTTTTAATCC
TCTTAATTTTATCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCTTTAGCGACT
GTATTGCCACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATAT
TTCTTTTTTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTC
TCCGATTAAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGG
GGTATTTCAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTT
TTTCTTACATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAG
CCTCTAACTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACA
CTGTTTTGGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCAT
TTCATGCATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATC
ATAATTCATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAG
TGTACATGCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGG
ACTTTCATCACGTCTATTGTATTACCCATTGAACACTCGGAATACTATTGGATACACGGGAAGTT
TGCACCTAAGTGCCATGTAAGAAGCCAGAGCTACCTCATACTATGTAATGCTCGCATTTTG
Found at i:51749489 original size:940 final size:940
Alignment explanation
Indices: 51747671--51749552 Score: 3764
Period size: 940 Copynumber: 2.0 Consensus size: 940
51747661 ACTGTATTGC
51747671 CACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATTTCTTTT
1 CACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATTTCTTTT
51747736 TTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCTCCGATT
66 TTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCTCCGATT
51747801 AAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGGGTATTT
131 AAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGGGTATTT
51747866 CAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTTTTCTTA
196 CAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTTTTCTTA
51747931 CATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGCCTCTAA
261 CATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGCCTCTAA
51747996 CTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACACTGTTTT
326 CTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACACTGTTTT
51748061 GGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCATTTCATGC
391 GGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCATTTCATGC
51748126 ATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATCATAATTC
456 ATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATCATAATTC
51748191 ATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAGTGTACAT
521 ATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAGTGTACAT
51748256 GCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGGACTTTCA
586 GCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGGACTTTCA
51748321 TCACGTCTATTGTATTACCCATTGAACACTCGGAATACTATTGGATACACGGGAAGTTTGCACCT
651 TCACGTCTATTGTATTACCCATTGAACACTCGGAATACTATTGGATACACGGGAAGTTTGCACCT
51748386 AAGTGCCATGTAAGAAGCCAGAGCTACCTCATACTATGTAATGCTCGCATTTTGAGCTACTCACG
716 AAGTGCCATGTAAGAAGCCAGAGCTACCTCATACTATGTAATGCTCGCATTTTGAGCTACTCACG
51748451 GACCTATTCATCAGTTAGTACCCGGATCCCATAGCACTATCATGTAACACTTGCTAATTGAGCTA
781 GACCTATTCATCAGTTAGTACCCGGATCCCATAGCACTATCATGTAACACTTGCTAATTGAGCTA
51748516 CTCATGGATCTGTACACAAAGTCAGCACCTGGACCCATACAGCGTTGACATGAAATGCTCGCTCA
846 CTCATGGATCTGTACACAAAGTCAGCACCTGGACCCATACAGCGTTGACATGAAATGCTCGCTCA
51748581 ACGAGTTACTCATGGGTTTGGTCACGAAGT
911 ACGAGTTACTCATGGGTTTGGTCACGAAGT
51748611 CACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATTTCTTTT
1 CACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATTTCTTTT
51748676 TTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCTCCGATT
66 TTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCTCCGATT
51748741 AAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGGGTATTT
131 AAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGGGTATTT
51748806 CAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTTTTCTTA
196 CAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTTTTCTTA
51748871 CATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGCCTCTAA
261 CATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGCCTCTAA
51748936 CTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACACTGTTTT
326 CTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACACTGTTTT
51749001 GGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCATTTCATGC
391 GGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCATTTCATGC
51749066 ATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATCATAATTC
456 ATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATCATAATTC
51749131 ATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAGTGTACAT
521 ATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAGTGTACAT
51749196 GCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGGACTTTCA
586 GCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGGACTTTCA
51749261 TCACGTCTATTGTATTACCCATTGAACACTCGGAATACTATTGGATACACGGGAAGTTTGCACCT
651 TCACGTCTATTGTATTACCCATTGAACACTCGGAATACTATTGGATACACGGGAAGTTTGCACCT
51749326 AAGTGCCATGTAAGAAGCCAGAGCTACCTCATACTATGTAATGCTCGCATTTTGAGCTACTCACG
716 AAGTGCCATGTAAGAAGCCAGAGCTACCTCATACTATGTAATGCTCGCATTTTGAGCTACTCACG
51749391 GACCTATTCATCAGTTAGTACCCGGATCCCATAGCACTATCATGTAACACTTGCTAATTGAGCTA
781 GACCTATTCATCAGTTAGTACCCGGATCCCATAGCACTATCATGTAACACTTGCTAATTGAGCTA
51749456 CTCATGGATCTGTACACAAAGTCAGCACCTGGACCCATACAGCGTTGACATGAAATGCTCGCTCA
846 CTCATGGATCTGTACACAAAGTCAGCACCTGGACCCATACAGCGTTGACATGAAATGCTCGCTCA
51749521 ACGAGTTACTCATGGGTTTGGTCACGAAGT
911 ACGAGTTACTCATGGGTTTGGTCACGAAGT
51749551 CA
1 CA
51749553 GTACTAGGAC
Statistics
Matches: 942, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
940 942 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (940 bp):
CACTAATTTTCTCTCTATGTCTTTGACTCCATATTTTAAACTCAGATATTTTATATATTTCTTTT
TTAGAAATATGATTTTTATTTTTTTTTCTATCATTTCATCAGAAAAGTTTTTTTCTTCTCCGATT
AAATTTCCTAATTTTATATCTTGTTGCTCAGACTTGGGAATTTCTCAAATCAGAATGGGGTATTT
CAAAATTATTCTAACTCTGTCTCACAACAATTTAAATATTTCATAATATGAAACTCTTTTTCTTA
CATCGTTTCTTCTATGTGAAACTAGAATTATTAAGATTTAATTTCATATTTTAGTCAGCCTCTAA
CTCAATTTCCACAATTTTTGGTGGATTTTCAAAGTCATACAACGGCTGTTGTCCAACACTGTTTT
GGTACAATATAATGATAACTATCATAAGTTCACTTTCGACTAATCATGAACTCACCATTTCATGC
ATTCCATGTTCAAATGCACAATATAAGTTAACATGATATTGCAACAAAATTTATAATCATAATTC
ATACATCTTAGCTCACCGATGTCTAAACATTTCAAAGTCTCAATAGCCACAAGCTTAGTGTACAT
GCCTGTACTCATCGAAATATATCATATAACCATACCTCTTTAACATGCCCTCCTTGGGACTTTCA
TCACGTCTATTGTATTACCCATTGAACACTCGGAATACTATTGGATACACGGGAAGTTTGCACCT
AAGTGCCATGTAAGAAGCCAGAGCTACCTCATACTATGTAATGCTCGCATTTTGAGCTACTCACG
GACCTATTCATCAGTTAGTACCCGGATCCCATAGCACTATCATGTAACACTTGCTAATTGAGCTA
CTCATGGATCTGTACACAAAGTCAGCACCTGGACCCATACAGCGTTGACATGAAATGCTCGCTCA
ACGAGTTACTCATGGGTTTGGTCACGAAGT
Found at i:51749839 original size:14 final size:16
Alignment explanation
Indices: 51749805--51749841 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
51749795 TTAAACATAT
51749805 ATATATCACCTATTTC
1 ATATATCACCTATTTC
*
51749821 CTATATCA-CT-TTTC
1 ATATATCACCTATTTC
51749835 ATATATC
1 ATATATC
51749842 GTCATTTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
14 10 0.53
15 2 0.11
16 7 0.37
ACGTcount: A:0.30, C:0.24, G:0.00, T:0.46
Consensus pattern (16 bp):
ATATATCACCTATTTC
Found at i:51754456 original size:37 final size:39
Alignment explanation
Indices: 51754360--51754461 Score: 136
Period size: 37 Copynumber: 2.7 Consensus size: 39
51754350 GGTGGATGTA
*
51754360 TAGCTCTTCGGAGCATTTCGCGTGTTATATCAATTGGAT
1 TAGCTCTTCGGAGCATTTGGCGTGTTATATCAATTGGAT
** *
51754399 TAGCTCTTCTAAGCATTTGGCATGTTAT-T-AATTGGAT
1 TAGCTCTTCGGAGCATTTGGCGTGTTATATCAATTGGAT
* *
51754436 TAGCTTTTCGGAGCACTTGGCGTGTT
1 TAGCTCTTCGGAGCATTTGGCGTGTT
51754462 TTGGTTGGAT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
37 29 0.54
38 1 0.02
39 24 0.44
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.40
Consensus pattern (39 bp):
TAGCTCTTCGGAGCATTTGGCGTGTTATATCAATTGGAT
Found at i:51759260 original size:60 final size:59
Alignment explanation
Indices: 51759140--51759276 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 59
51759130 CAGTGTTAAC
* *
51759140 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATAT
* * *
51759201 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCGTATTACA-AGTC-GAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCC-CATTACAGA-TCAGAG-TATAT
* *
51759261 TGGGCCTTGGCCATAT
1 TGGGCCTAGCCCATAT
51759277 TAACACAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 4 0.06
60 51 0.77
61 11 0.17
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTATAT
Found at i:51761677 original size:12 final size:12
Alignment explanation
Indices: 51761662--51761686 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51761652 ACAGTAAATA
51761662 ATAAAAATTTTC
1 ATAAAAATTTTC
51761674 ATAAAAATTTTC
1 ATAAAAATTTTC
51761686 A
1 A
51761687 AACATACATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
ATAAAAATTTTC
Found at i:51763320 original size:31 final size:31
Alignment explanation
Indices: 51763282--51763344 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
51763272 TACCGAGGTA
51763282 AGTTGTACGTAAGTAAGGTAACTTTATCGTT
1 AGTTGTACGTAAGTAAGGTAACTTTATCGTT
51763313 AGTTGTACGTAAGTAAGGTAACTTTATCGTT
1 AGTTGTACGTAAGTAAGGTAACTTTATCGTT
51763344 A
1 A
51763345 TTATGTGTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (31 bp):
AGTTGTACGTAAGTAAGGTAACTTTATCGTT
Found at i:51763547 original size:48 final size:48
Alignment explanation
Indices: 51763476--51763711 Score: 213
Period size: 48 Copynumber: 4.9 Consensus size: 48
51763466 CCATTTGGGT
* * *
51763476 GATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
1 GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
* ** *
51763524 GATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTGAT
1 GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
* * * * * *
51763572 GTTGTGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGG-CATT
1 GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-C
* ** * * * * *
51763620 GAGACAAGAGCCAATGTAAGACCATGTTTGGGATACGGCATCAGCCTC
1 GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
* * * * * *
51763668 GACATGTGAGCCAATGTAAGACAATATTTGGAACATGGCATCGG
1 GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGG
51763712 AAATTCACCA
Statistics
Matches: 148, Mismatches: 38, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
47 1 0.01
48 146 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
Found at i:51763660 original size:96 final size:96
Alignment explanation
Indices: 51763488--51763661 Score: 251
Period size: 96 Copynumber: 1.8 Consensus size: 96
51763478 TATGTGTGCC
* * ** *
51763488 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGAGACAAGAGCCAATGTAAGACCATGTTT
*
51763553 GGAACATGGCATCGGTGATGTTGTGAGAGCT
66 GGAACACGGCATCGGTGATGTTGTGAGAGCT
*
51763584 AGTGTAAGACCATGTCTAGGACATGGCATCGG-CATTGAGACAAGAGCCAATGTAAGACCATGTT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCA-CGAGACAAGAGCCAATGTAAGACCATGTT
* *
51763648 TGGGATACGGCATC
65 TGGAACACGGCATC
51763662 AGCCTCGACA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
95 2 0.03
96 66 0.97
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGAGACAAGAGCCAATGTAAGACCATGTTT
GGAACACGGCATCGGTGATGTTGTGAGAGCT
Found at i:51777244 original size:45 final size:45
Alignment explanation
Indices: 51777193--51777280 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
51777183 CTATATGATG
* *
51777193 TGAACTCATTGAGTTGTTGTCTGAGTTCATGATATATGTGACATC
1 TGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATC
*
51777238 TGAACTCATTGAGTTATGGTCTGAGTTCATGATGTATGTGACA
1 TGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACA
51777281 CATGTTTTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.39
Consensus pattern (45 bp):
TGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATC
Found at i:51778617 original size:13 final size:13
Alignment explanation
Indices: 51778601--51778625 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51778591 TAAGTACATG
51778601 GCCGTGTGACCTA
1 GCCGTGTGACCTA
51778614 GCCGTGTGACCT
1 GCCGTGTGACCT
51778626 TACTTGGTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.32, T:0.24
Consensus pattern (13 bp):
GCCGTGTGACCTA
Found at i:51789105 original size:92 final size:92
Alignment explanation
Indices: 51788861--51789124 Score: 283
Period size: 92 Copynumber: 2.9 Consensus size: 92
51788851 GCTGTTATGT
* * *
51788861 GAGCTAGTGTAAGACATGTCTAGGACATGGATCGGCCAC-AT-TATGAAATGCTAGTATAAGACA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGG-TACGATATATG-AA-GCTAGTGTAAGACA
* *
51788924 TGTCTGGGACATGCGTCGGCATTGAGACAA
63 TGTCTGGGACATGCATCGGCACTGAGACAA
* *
51788954 GAGCTAGTGTAAGACATGCCTAGGACATGCATCAGCCT-CGA-A-ATGTAAGCTAGTGTAAGACA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATC-G-GTACGATATATG-AAGCTAGTGTAAGACA
* *
51789016 TGTCTGGGACATGCATC-G-ACT-ACGAGAT
63 TGTCTGGGACATGCATCGGCACTGA-GACAA
* *
51789044 GTGCTAGTGTAAGACATGTCTAGGACATGCATCGGTACGGATATATGAGAGCCAGTGTAAGACAT
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGTAC-GATATATGA-AGCTAGTGTAAGACAT
*
51789109 GTCTGGAACATGCATC
64 GTCTGGGACATGCATC
51789125 AGCATAGATA
Statistics
Matches: 146, Mismatches: 15, Indels: 21
0.80 0.08 0.12
Matches are distributed among these distances:
88 1 0.01
89 3 0.02
90 38 0.26
91 3 0.02
92 62 0.42
93 37 0.25
94 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (92 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGTACGATATATGAAGCTAGTGTAAGACATGT
CTGGGACATGCATCGGCACTGAGACAA
Found at i:51789108 original size:48 final size:47
Alignment explanation
Indices: 51788856--51789154 Score: 244
Period size: 46 Copynumber: 6.4 Consensus size: 47
51788846 ACACTGCTGT
* *
51788856 TATGTGAGCTAGTGTAAGACATGTCTAGGACATGGATCGGCCAC-AT-
1 TATGAGAGCTAGTGTAAGACATGTCTAGGACATGCATCGG-CACGATA
* * * * * *
51788902 TATGAAATGCTAGTATAAGACATGTCTGGGACATGCGTCGGCATTGAGA
1 TATGAGA-GCTAGTGTAAGACATGTCTAGGACATGCATCGGCA-CGATA
* * * *
51788951 CA--AGAGCTAGTGTAAGACATGCCTAGGACATGCATCAGCCTCGA-A
1 TATGAGAGCTAGTGTAAGACATGTCTAGGACATGCATC-GGCACGATA
* *
51788996 -ATGTA-AGCTAGTGTAAGACATGTCTGGGACATGCATCGACTACG--A
1 TATG-AGAGCTAGTGTAAGACATGTCTAGGACATGCATCGGC-ACGATA
* * *
51789041 GAT--GTGCTAGTGTAAGACATGTCTAGGACATGCATCGGTACGGATA
1 TATGAGAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCAC-GATA
* * *
51789087 TATGAGAGCCAGTGTAAGACATGTCT-GGAACATGCATCAGCATAGATA
1 TATGAGAGCTAGTGTAAGACATGTCTAGG-ACATGCATCGGCA-CGATA
*
51789135 TATGAGAGCCAGTGTAAGAC
1 TATGAGAGCTAGTGTAAGAC
51789155 CATATCTGGG
Statistics
Matches: 204, Mismatches: 31, Indels: 34
0.76 0.12 0.13
Matches are distributed among these distances:
43 2 0.01
44 33 0.16
45 4 0.02
46 73 0.36
47 36 0.18
48 55 0.27
49 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.24
Consensus pattern (47 bp):
TATGAGAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCACGATA
Found at i:51789186 original size:48 final size:47
Alignment explanation
Indices: 51788953--51789179 Score: 139
Period size: 48 Copynumber: 4.8 Consensus size: 47
51788943 CATTGAGACA
* ** * *
51788953 AGAGCTAGTGTAAGACATGCCTAGG-ACATGCATCAGCCTCGAA-ATG
1 AGAGCCAGTGTAAGACATATCT-GGAACATGCATCAGCATAGAATATG
* * * *
51788999 TA-AGCTAGTGTAAGACATGTCTGGGACATGCATC-G-ACTACG-AGAT-
1 -AGAGCCAGTGTAAGACATATCTGGAACATGCATCAGCA-TA-GAATATG
* * * * * **
51789044 -GTGCTAGTGTAAGACATGTCTAGG-ACATGCATCGGTACGGATATATG
1 AGAGCCAGTGTAAGACATATCT-GGAACATGCATCAGCATAGA-ATATG
*
51789091 AGAGCCAGTGTAAGACATGTCTGGAACATGCATCAGCATAGATATATG
1 AGAGCCAGTGTAAGACATATCTGGAACATGCATCAGCATAGA-ATATG
* *
51789139 AGAGCCAGTGTAAGACCATATCTGGGATATGGCATCAGCAT
1 AGAGCCAGTGTAAGA-CATATCTGGAACAT-GCATCAGCAT
51789180 CGATATGTGT
Statistics
Matches: 149, Mismatches: 16, Indels: 27
0.78 0.08 0.14
Matches are distributed among these distances:
44 29 0.19
45 8 0.05
46 35 0.23
47 3 0.02
48 53 0.36
49 11 0.07
50 10 0.07
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (47 bp):
AGAGCCAGTGTAAGACATATCTGGAACATGCATCAGCATAGAATATG
Found at i:51793567 original size:11 final size:11
Alignment explanation
Indices: 51793551--51793587 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
51793541 GTGGGAGTCC
51793551 TATAAACATCT
1 TATAAACATCT
*
51793562 TATAAATA-C-
1 TATAAACATCT
51793571 TATAAACATCT
1 TATAAACATCT
51793582 TATAAA
1 TATAAA
51793588 TACAGCTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 7 0.32
10 2 0.09
11 13 0.59
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (11 bp):
TATAAACATCT
Found at i:51793575 original size:20 final size:20
Alignment explanation
Indices: 51793550--51793590 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
51793540 TGTGGGAGTC
51793550 CTATAAACATCTTATAAATA
1 CTATAAACATCTTATAAATA
51793570 CTATAAACATCTTATAAATA
1 CTATAAACATCTTATAAATA
51793590 C
1 C
51793591 AGCTTATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (20 bp):
CTATAAACATCTTATAAATA
Found at i:51794926 original size:64 final size:64
Alignment explanation
Indices: 51794855--51794982 Score: 247
Period size: 64 Copynumber: 2.0 Consensus size: 64
51794845 AATCAACTCC
*
51794855 ATAATTATATTTTTTTAATTAGAATAAATAGAGTTTTAAGATAAAAATAATTTCTCACACAATT
1 ATAATTATATTTTTTTAATTAGAATAAATAAAGTTTTAAGATAAAAATAATTTCTCACACAATT
51794919 ATAATTATATTTTTTTAATTAGAATAAATAAAGTTTTAAGATAAAAATAATTTCTCACACAATT
1 ATAATTATATTTTTTTAATTAGAATAAATAAAGTTTTAAGATAAAAATAATTTCTCACACAATT
51794983 TTCTTAAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.46, C:0.06, G:0.05, T:0.42
Consensus pattern (64 bp):
ATAATTATATTTTTTTAATTAGAATAAATAAAGTTTTAAGATAAAAATAATTTCTCACACAATT
Found at i:51797604 original size:19 final size:19
Alignment explanation
Indices: 51797580--51797621 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
51797570 ATATGTTTTA
51797580 TATTATAAAATCAAATAAT
1 TATTATAAAATCAAATAAT
51797599 TATTATAAAATCAAATAAT
1 TATTATAAAATCAAATAAT
51797618 TATT
1 TATT
51797622 TCAAATATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (19 bp):
TATTATAAAATCAAATAAT
Found at i:51800404 original size:48 final size:48
Alignment explanation
Indices: 51800281--51800411 Score: 190
Period size: 48 Copynumber: 2.7 Consensus size: 48
51800271 GCTCATATCG
* * ** *
51800281 ATGCCATGCCCCAGACATGGTCTTACACGAAATCATATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
51800329 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
*
51800377 ATGCCATGTGCCAGACATGGTCTTACATGGGATCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCA
51800412 TACATAACCC
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:51808948 original size:73 final size:73
Alignment explanation
Indices: 51808845--51808980 Score: 209
Period size: 73 Copynumber: 1.9 Consensus size: 73
51808835 TCACATACTA
* * *
51808845 TTTTTAGATAGATAAGTAGTATAGTTAAATAAGCTTTTGTTTGGCCCTATCATATGTCTATTCGC
1 TTTTTAGATAGACAAGTAGTATAGTTAAATAAACTTTTGTTTGACCCTATCATATGTCTATTCGC
51808910 ACACTATT
66 ACACTATT
* * * *
51808918 TTTTTAGATGGACAAGTAGTATAGTTAAATAAACTTTTGTTTGACCTTGTCATATGTTTATTC
1 TTTTTAGATAGACAAGTAGTATAGTTAAATAAACTTTTGTTTGACCCTATCATATGTCTATTC
51808981 TCATCGGAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
73 56 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (73 bp):
TTTTTAGATAGACAAGTAGTATAGTTAAATAAACTTTTGTTTGACCCTATCATATGTCTATTCGC
ACACTATT
Found at i:51820617 original size:49 final size:49
Alignment explanation
Indices: 51820541--51820906 Score: 301
Period size: 49 Copynumber: 7.7 Consensus size: 49
51820531 GGAATAAGTT
* *
51820541 GCCGATGCCATGTCCCAAACATGGTTTTACACTGGCTATCGTCATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGAG
* *
51820590 GCCAATGCCATGTCCCAGACATGGTTTTACACTGGCTATCGTCATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGAG
* * * * * *
51820639 GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTATATACG-T
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGT-CAT-CGAG
* * * * * ** *
51820689 GCTGATGTCATATCCCAGACATGGTCTTATACTAGC-A-CAAC-TCTTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATC-GAG
* * * *
51820735 GCTGATG-CATGTCCCAGACAT-GTTTTACACAGGCTATCATCATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGAG
* * * *
51820782 GCCGATG-CATGTCCCAGAAAT-GTCTTACACTAGC-ACTCGTC-TCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCGTCATCGAG
* * * * * *
51820828 ACTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGAG
*
51820876 GCCGATG-CATGTCCCAGACAT-GTTTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
51820907 AGCACACAAA
Statistics
Matches: 257, Mismatches: 47, Indels: 29
0.77 0.14 0.09
Matches are distributed among these distances:
44 9 0.04
45 15 0.06
46 30 0.12
47 62 0.24
48 20 0.08
49 86 0.33
50 33 0.13
51 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGAG
Found at i:51820844 original size:94 final size:96
Alignment explanation
Indices: 51820544--51820911 Score: 314
Period size: 94 Copynumber: 3.9 Consensus size: 96
51820534 ATAAGTTGCC
* * * * *
51820544 GATGCCATGTCCCAAACATGGTTTTACACTGGCTATCGTCATCGAGGCCAATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACAGGCTATCATCATCGAGGCCGATGCCATGTCCCAGA
* * ** *
51820609 CATGGTTTTACACTGGCTA-TCGTCATCGAGGCC
66 CATGGTCTTACACTAGC-ACTCGTC-TC-ATACT
* * * * * * *
51820642 AATGCCATGTCCCAGACATGGTCTTACACTA-GCTCTTGTAT-ATACG-TGCTGATGTCATATCC
1 GATGCCATGTCCCAGACATGGTCTTACAC-AGGCT-AT-CATCAT-CGAGGCCGATGCCATGTCC
* *
51820704 CAGACATGGTCTTATACTAGCACAAC-TCT--TAGCT
62 CAGACATGGTCTTACACTAGCAC-TCGTCTCATA-CT
*
51820738 GATG-CATGTCCCAGACAT-GTTTTACACAGGCTATCATCATCGAGGCCGATG-CATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACAGGCTATCATCATCGAGGCCGATGCCATGTCCCAGA
*
51820800 AAT-GTCTTACACTAGCACTCGTCTCAATACT
66 CATGGTCTTACACTAGCACTCGTCTC-ATACT
* * * *
51820831 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG-CATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACAGGCTATCATCATCGAGGCCGATGCCATGTCCCAGA
*
51820894 CAT-GTTTTACACTAGCAC
66 CATGGTCTTACACTAGCAC
51820912 ACAAATAACC
Statistics
Matches: 218, Mismatches: 36, Indels: 36
0.75 0.12 0.12
Matches are distributed among these distances:
90 1 0.00
91 17 0.08
92 16 0.07
93 16 0.07
94 63 0.29
95 32 0.15
96 4 0.02
98 31 0.14
99 34 0.16
100 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACAGGCTATCATCATCGAGGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCACTCGTCTCATACT
Found at i:51825359 original size:30 final size:30
Alignment explanation
Indices: 51825325--51825385 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
51825315 TCCTTAACTC
51825325 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
51825355 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
51825385 A
1 A
51825386 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:51830265 original size:13 final size:13
Alignment explanation
Indices: 51830249--51830275 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51830239 CCTAGACACA
51830249 TGCCCGTGTCCTT
1 TGCCCGTGTCCTT
51830262 TGCCCGTGTCCTT
1 TGCCCGTGTCCTT
51830275 T
1 T
51830276 TACATGGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.37, G:0.22, T:0.41
Consensus pattern (13 bp):
TGCCCGTGTCCTT
Found at i:51831401 original size:47 final size:47
Alignment explanation
Indices: 51831198--51831511 Score: 182
Period size: 47 Copynumber: 6.6 Consensus size: 47
51831188 ATAAGTTGCT
* * *
51831198 GATGCCATGTCCTAGACATGGTTTTACACTGGCTATCATCATCGAGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCATTGAGGCC
* * * * * *
51831247 AATGCCATGTCCCA-AGCATGGTCTTACTCTAGCTCTCGT-ATAT-ACGTGCT
1 GATG-CATGTCCCAGA-CAT-GTCTTACACTGGCTATCATCAT-TGA-G-GCC
* * * *
51831297 GATGTCATATCCCAGACATGGTCTTATACTAGC-A-CAACTC-TT-A-GCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-A-TCATTGAGGCC
* *
51831343 AATGCATGTCCCAGACATGTTTTACACTGGCTATCATCATTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATTGAGGCC
* * * ** **
51831390 GATGCATGTCCCAGAAATGTCTTACACTAGC-ACTCGTC-TCAATACC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATCATTGAGGCC
* * * *
51831436 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-AATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCATTGAGGCC
51831484 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
51831512 AGCACTCAAA
Statistics
Matches: 204, Mismatches: 43, Indels: 39
0.71 0.15 0.14
Matches are distributed among these distances:
44 12 0.06
45 17 0.08
46 27 0.13
47 58 0.28
48 26 0.13
49 33 0.16
50 30 0.15
51 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATTGAGGCC
Found at i:51831484 original size:94 final size:94
Alignment explanation
Indices: 51831347--51831518 Score: 274
Period size: 94 Copynumber: 1.8 Consensus size: 94
51831337 TTAGCTAATG
* * *
51831347 CATGTCCCAGACATGTTTTACACTGGCTATCATCATTGAGGCCGATGCATGTCCCAGAAATGTCT
1 CATGTCCCAAACATGTCTTACACTGGCTATCATCAATGAGGCCGATGCATGTCCCAGAAATGTCT
51831412 TACACTAGCACTCGTCTCAATACCGATGC
66 TACACTAGCACTCGTCTCAATACCGATGC
* * *
51831441 CATGTCCCAAACATGGTCTTACACTGGCTCTCAT-AATGTGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAAACAT-GTCTTACACTGGCTATCATCAATGAGGCCGATGCATGTCCCAGAAATGTC
51831505 TTACACTAGCACTC
65 TTACACTAGCACTC
51831519 AAATAACCCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
94 54 0.76
95 17 0.24
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (94 bp):
CATGTCCCAAACATGTCTTACACTGGCTATCATCAATGAGGCCGATGCATGTCCCAGAAATGTCT
TACACTAGCACTCGTCTCAATACCGATGC
Found at i:51835345 original size:13 final size:13
Alignment explanation
Indices: 51835327--51835351 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51835317 GGCATAAATT
51835327 CACAAAAAATAAA
1 CACAAAAAATAAA
51835340 CACAAAAAATAA
1 CACAAAAAATAA
51835352 TTTTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.16, G:0.00, T:0.08
Consensus pattern (13 bp):
CACAAAAAATAAA
Found at i:51838689 original size:48 final size:48
Alignment explanation
Indices: 51838634--51838856 Score: 198
Period size: 48 Copynumber: 4.6 Consensus size: 48
51838624 TGTGCTAGTG
* *
51838634 TAAGACCATGTCTGGGACATGGTATCGGCCACGATATGAGAGTCCA-TA
1 TAAGACCATGTCTGGGACATGGCATCGGCAACGATATGAGAG-CCAGTA
* * * * *
51838682 TAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCAACGATATGAGAGCCAGTA
* ** * * * * *
51838730 TAAGACCAGGTCTGGGACATGGCATTAGCATCGATATGTGTGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCAACGATATGAGAGCCAGTA
* * * ** * *
51838778 TAAGACCATGTCTAGGACATGTCATCAGCTTCGACATGTA-AGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCAACGATATG-AGAGCCAGTA
* *
51838826 TAAGACCATGTCTGAGACGTGGCATCGGCAA
1 TAAGACCATGTCTGGGACATGGCATCGGCAA
51838857 TTTACCCTCT
Statistics
Matches: 139, Mismatches: 34, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
47 3 0.02
48 136 0.98
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCAACGATATGAGAGCCAGTA
Found at i:51840403 original size:40 final size:40
Alignment explanation
Indices: 51840305--51840567 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
51840295 TCCTCGTTCA
* * * * *
51840305 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
51840344 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51840384 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51840424 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
51840464 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
51840504 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
51840544 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51840568 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:51846241 original size:548 final size:548
Alignment explanation
Indices: 51845205--51846300 Score: 2057
Period size: 548 Copynumber: 2.0 Consensus size: 548
51845195 AAATTCATCA
51845205 AACGGCAAAAGCATCAAGTCCGCCGGAAAACAGGAACCTCGAATTTCCAGGGGACATTTCTTACA
1 AACGGCAAAAGCATCAAGTCCGCCGGAAAACAGGAACCTCGAATTTCCAGGGGACATTTCTTACA
51845270 CACTTTGTCGACAAGCACGTAACGACCCAAGGGATTTGACACCCGAATTACGAACTCAGTAGACT
66 CACTTTGTCGACAAGCACGTAACGACCCAAGGGATTTGACACCCGAATTACGAACTCAGTAGACT
51845335 CAATAGGTAAAGTCTTACTGGATGCTAAGGTTTCACATATGTAAGAATGAGTAGAACCGGGGTCA
131 CAATAGGTAAAGTCTTACTGGATGCTAAGGTTTCACATATGTAAGAATGAGTAGAACCGGGGTCA
51845400 ATCAAAGCAATTACATTAGTATCAAAGAGAGTGAATGTACCGGTAATAACATCAGGCGAAGAAGC
196 ATCAAAGCAATTACATTAGTATCAAAGAGAGTGAATGTACCGGTAATAACATCAGGCGAAGAAGC
*
51845465 ATCCTCGCGGGCACGTATAGCATAAGCTCTAGCAGGCGCACGGGCTTCGGATCTGGTTATATCAT
261 ATCCTCGCGGGCACGTATAGCATAAGCTCTAGCAGGCGCACGAGCTTCGGATCTGGTTATATCAT
51845530 CTCTAGATCCTCTCTGACCACCACCAGCATTGCCCATATTTCCAGATGGTCTACCTCGAGCAGTG
326 CTCTAGATCCTCTCTGACCACCACCAGCATTGCCCATATTTCCAGATGGTCTACCTCGAGCAGTG
* * *
51845595 GTAGCACCCGGTTTCCCACTCTGATTTTCATTCTGTTCAAACAACCTCGGGCAATCTTTAATGAA
391 GTAGCACCCGGTCTCCCACTCTGATTTGCATTCTGTCCAAACAACCTCGGGCAATCTTTAATGAA
* *
51845660 GTGGTCCACTGATCCGCATTTGTAACAGGAGCGGTCAGGAAATCTACAACTCCCCGAATGCCATT
456 GTGGTCAACTGATCCGCACTTGTAACAGGAGCGGTCAGGAAATCTACAACTCCCCGAATGCCATT
*
51845725 TACCGCAATATCGACATTCCGTTCTGTC
521 TACCGCAATATCGACATTCCGTCCTGTC
51845753 AACGGCAAAAGCATCAAGTCCGCCGGAAAACAGGAACCTCGAATTTCCAGGGGACATTTCTTACA
1 AACGGCAAAAGCATCAAGTCCGCCGGAAAACAGGAACCTCGAATTTCCAGGGGACATTTCTTACA
51845818 CACTTTGTCGACAAGCACGTAACGACCCAAGGGATTTGACACCCGAATTACGAACTCAGTAGACT
66 CACTTTGTCGACAAGCACGTAACGACCCAAGGGATTTGACACCCGAATTACGAACTCAGTAGACT
*
51845883 CAATAGGTAAAGTCTTACTGGATGCTAAGGTTTCACATATGTAGGAATGAGTAGAACCGGGGTCA
131 CAATAGGTAAAGTCTTACTGGATGCTAAGGTTTCACATATGTAAGAATGAGTAGAACCGGGGTCA
51845948 ATCAAAGCAATTACATTAGTATCAAAGAGAGTGAATGTACCGGTAATAACATCAGGCGAAGAAGC
196 ATCAAAGCAATTACATTAGTATCAAAGAGAGTGAATGTACCGGTAATAACATCAGGCGAAGAAGC
51846013 ATCCTCGCGGGCACGTATAGCATAAGCTCTAGCAGGCGCACGAGCTTCGGATCTGGTTATATCAT
261 ATCCTCGCGGGCACGTATAGCATAAGCTCTAGCAGGCGCACGAGCTTCGGATCTGGTTATATCAT
* *
51846078 CTCTAGATCCTCTCTGACCACCACTAGCATTGCCCGTATTTCCAGATGGTCTACCTCGAGCAGTG
326 CTCTAGATCCTCTCTGACCACCACCAGCATTGCCCATATTTCCAGATGGTCTACCTCGAGCAGTG
**
51846143 GTAGCACCCGGTCTCCCACTCTGATTTGCATTCTGTCCCGACAACCTCGGGCAATCTTTAATGAA
391 GTAGCACCCGGTCTCCCACTCTGATTTGCATTCTGTCCAAACAACCTCGGGCAATCTTTAATGAA
*
51846208 GTGGTCAACTGATCCGCACTTGTAACAGGAGCGGTCAGGGAATCTACAACTCCCCGAATGCCATT
456 GTGGTCAACTGATCCGCACTTGTAACAGGAGCGGTCAGGAAATCTACAACTCCCCGAATGCCATT
* *
51846273 TACCGCAATATCGGCATTTCGTCCTGTC
521 TACCGCAATATCGACATTCCGTCCTGTC
51846301 TCGACGTTCA
Statistics
Matches: 533, Mismatches: 15, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
548 533 1.00
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.24
Consensus pattern (548 bp):
AACGGCAAAAGCATCAAGTCCGCCGGAAAACAGGAACCTCGAATTTCCAGGGGACATTTCTTACA
CACTTTGTCGACAAGCACGTAACGACCCAAGGGATTTGACACCCGAATTACGAACTCAGTAGACT
CAATAGGTAAAGTCTTACTGGATGCTAAGGTTTCACATATGTAAGAATGAGTAGAACCGGGGTCA
ATCAAAGCAATTACATTAGTATCAAAGAGAGTGAATGTACCGGTAATAACATCAGGCGAAGAAGC
ATCCTCGCGGGCACGTATAGCATAAGCTCTAGCAGGCGCACGAGCTTCGGATCTGGTTATATCAT
CTCTAGATCCTCTCTGACCACCACCAGCATTGCCCATATTTCCAGATGGTCTACCTCGAGCAGTG
GTAGCACCCGGTCTCCCACTCTGATTTGCATTCTGTCCAAACAACCTCGGGCAATCTTTAATGAA
GTGGTCAACTGATCCGCACTTGTAACAGGAGCGGTCAGGAAATCTACAACTCCCCGAATGCCATT
TACCGCAATATCGACATTCCGTCCTGTC
Found at i:51848902 original size:40 final size:39
Alignment explanation
Indices: 51848804--51849066 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
51848794 TCCTCGTTCA
* * * *
51848804 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
51848843 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
51848882 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
51848922 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
51848962 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
51849002 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
51849043 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51849067 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:51849026 original size:120 final size:119
Alignment explanation
Indices: 51848804--51849066 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
51848794 TCCTCGTTCA
* * *
51848804 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
51848869 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
51848922 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
51848987 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
51849043 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
51849067 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:51849075 original size:41 final size:41
Alignment explanation
Indices: 51848998--51849075 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
51848988 TTTGTATCTC
* * *
51848998 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
51849039 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
51849076 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:51853503 original size:48 final size:48
Alignment explanation
Indices: 51853427--51853616 Score: 274
Period size: 48 Copynumber: 4.0 Consensus size: 48
51853417 ATATCGATTT
* * *
51853427 CGATGCCATGTCCTAGATATGGTCTTACACTGGCTCTCATAATAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATAATGC
* *
51853475 CGATACCATGTCCCAGACATGGTCTTACACTAGG-TCACATAATGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GGCTCACATAATAATGC
* *
51853523 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTGACATAATGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATAATGC
* **
51853571 TGATGCCATGTCCTGGACATGGTCTTACACTGGCTCACATAATAAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATAAT
51853617 AGCAGTGTCT
Statistics
Matches: 128, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
47 2 0.02
48 124 0.97
49 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATAATGC
Found at i:51859584 original size:48 final size:48
Alignment explanation
Indices: 51859495--51859744 Score: 313
Period size: 48 Copynumber: 5.2 Consensus size: 48
51859485 GGAAATCTTA
* * * ** *
51859495 CACAT-ATAGATGCCGATGCCATATCTCAGTTATGGTATTACACTGGCT
1 CACATAATA-ATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCT
* * * * *
51859543 CTCATAATAATGCCGATGCCTTGTCCCAGACATGTTCTTACACTAGCT
1 CACATAATAATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCT
* * *
51859591 CACTTAATGATGCTAATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 CACATAATAATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCT
*
51859639 CACATAATAATGCCAATGCCATGTCCCAGACATGGTCTTTCACTGGCT
1 CACATAATAATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCT
* * * *
51859687 TACATAATGATACCAATGCCATGTCCCAAACATGGTCTTACACTGGCT
1 CACATAATAATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCT
51859735 CACATAATAA
1 CACATAATAA
51859745 CAACTGTGTC
Statistics
Matches: 173, Mismatches: 28, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
48 170 0.98
49 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (48 bp):
CACATAATAATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCT
Found at i:51861321 original size:21 final size:21
Alignment explanation
Indices: 51861295--51861349 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
51861285 GTTAAAAAAA
51861295 CACACGGGCGTGTCACCCTTC
1 CACACGGGCGTGTCACCCTTC
*
51861316 CACACGGGTGTGTCACCCTTC
1 CACACGGGCGTGTCACCCTTC
*
51861337 CACACGAGCGTGT
1 CACACGGGCGTGT
51861350 GCCCTTGTCT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.16, C:0.38, G:0.25, T:0.20
Consensus pattern (21 bp):
CACACGGGCGTGTCACCCTTC
Found at i:51864294 original size:12 final size:12
Alignment explanation
Indices: 51864277--51864303 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
51864267 ATTCCGAAGT
51864277 ATATATATATAC
1 ATATATATATAC
51864289 ATATATATATAC
1 ATATATATATAC
51864301 ATA
1 ATA
51864304 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:51864822 original size:27 final size:27
Alignment explanation
Indices: 51864791--51864968 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51864781 TAAATTGTAC
51864791 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
51864818 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51864844 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
51864872 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51864900 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51864927 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
51864954 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51864969 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51864905 original size:82 final size:81
Alignment explanation
Indices: 51864792--51864947 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51864782 AAATTGTACA
* *
51864792 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
51864856 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
51864873 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
51864938 TGCGAGTTGA
65 TGCGAATTGA
51864948 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51864959 original size:82 final size:81
Alignment explanation
Indices: 51864788--51864968 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
51864778 GATTAAATTG
* *
51864788 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
51864853 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
51864869 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
51864933 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
51864951 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
51864969 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:51874207 original size:40 final size:40
Alignment explanation
Indices: 51874118--51874381 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
51874108 TTGAATGATG
* *
51874118 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
51874157 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
51874197 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51874236 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51874276 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51874316 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51874357 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51874382 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51874399 original size:120 final size:118
Alignment explanation
Indices: 51874118--51874414 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
51874108 TTGAATGATG
* *
51874118 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
51874178 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
51874236 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
51874301 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
51874357 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
51874415 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:51879847 original size:48 final size:48
Alignment explanation
Indices: 51879788--51880107 Score: 276
Period size: 48 Copynumber: 6.7 Consensus size: 48
51879778 TATGTGTGCT
*
51879788 AGTGTAAGACCATGTCTGGGACATGGTGTCGGCCA-CGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGTATCGG-CATCGATATGAGAGCC
* * * *
51879836 AGTGTAAGACCATGTCTGGGACATGGAATCTGCATTGATA--AGTATGCT
1 AGTGTAAGACCATGTCTGGGACATGGTATCGGCATCGATATGAG-A-GCC
* * * *
51879884 AGTTTAAGACCATGTCTGGGACATGCTGTCAGCCA-C-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGTATC-GGCATCGA-TATGAGAGCC
* * * * * *
51879932 AGTGTAAGACCATGTCTAGGACATGGCATCTGCATCGATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGTATCGGCATCGATATGAGAGCC
* * * * * *
51879980 AGTTTAGGACCATGTCTAGGACATGCTGTTGGCCAT--ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGTATCGG-CATCGA-TATGAGAGCC
** * * *
51880028 AGTGTAAGACCATGAATGGGACATGGCATCGGCATTGAGATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGTATCGGCATCGATATGAGAGCC
* *
51880076 AGTGTAAGACCATGTCTGGGACGTGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGTATCGG
51880108 TAATTTACCC
Statistics
Matches: 213, Mismatches: 46, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
46 2 0.01
47 10 0.05
48 191 0.90
49 8 0.04
50 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGTATCGGCATCGATATGAGAGCC
Found at i:51879939 original size:96 final size:96
Alignment explanation
Indices: 51879775--51880097 Score: 418
Period size: 96 Copynumber: 3.4 Consensus size: 96
51879765 TGACATTGGG
* * *
51879775 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGTGTCGGCCACGA-TATGAGAGCCAGT
1 TGATAAGTATGCTAGTGTAAGACCATGTCTGGGACATGCTGTCGGCCAC-ATTATGAGAGCCAGT
*
51879839 GTAAGACCATGTCTGGGACATGGAATCTGCAT
65 GTAAGACCATGTCTGGGACATGGCATCTGCAT
* *
51879871 TGATAAGTATGCTAGTTTAAGACCATGTCTGGGACATGCTGTCAGCCACATTATGAGAGCCAGTG
1 TGATAAGTATGCTAGTGTAAGACCATGTCTGGGACATGCTGTCGGCCACATTATGAGAGCCAGTG
*
51879936 TAAGACCATGTCTAGGACATGGCATCTGCAT
66 TAAGACCATGTCTGGGACATGGCATCTGCAT
* * * * * * * *
51879967 CGATATGTGTGCTAGTTTAGGACCATGTCTAGGACATGCTGTTGGCCATATTATGAGAGCCAGTG
1 TGATAAGTATGCTAGTGTAAGACCATGTCTGGGACATGCTGTCGGCCACATTATGAGAGCCAGTG
** *
51880032 TAAGACCATGAATGGGACATGGCATCGGCAT
66 TAAGACCATGTCTGGGACATGGCATCTGCAT
* *
51880063 TGAGATGAG-A-GCCAGTGTAAGACCATGTCTGGGAC
1 T--GATAAGTATGCTAGTGTAAGACCATGTCTGGGAC
51880098 GTGGCATCGG
Statistics
Matches: 197, Mismatches: 27, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
95 1 0.01
96 192 0.97
98 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (96 bp):
TGATAAGTATGCTAGTGTAAGACCATGTCTGGGACATGCTGTCGGCCACATTATGAGAGCCAGTG
TAAGACCATGTCTGGGACATGGCATCTGCAT
Found at i:51882051 original size:21 final size:20
Alignment explanation
Indices: 51882027--51882065 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
51882017 AAACTTATAC
51882027 ATCTATCAACAAACATTCACA
1 ATCTATCAACAAAC-TTCACA
*
51882048 ATCTATCAAGAAACTTCA
1 ATCTATCAACAAACTTCA
51882066 AAATACACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.26, G:0.03, T:0.26
Consensus pattern (20 bp):
ATCTATCAACAAACTTCACA
Found at i:51885375 original size:21 final size:21
Alignment explanation
Indices: 51885342--51885386 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
51885332 ATTGAAATGG
51885342 TTGTGAATGAAATGACATGTT
1 TTGTGAATGAAATGACATGTT
* * *
51885363 TTGTGTATTAAATGGCATGTT
1 TTGTGAATGAAATGACATGTT
51885384 TTG
1 TTG
51885387 ATTGCTTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.04, G:0.24, T:0.44
Consensus pattern (21 bp):
TTGTGAATGAAATGACATGTT
Found at i:51887730 original size:43 final size:43
Alignment explanation
Indices: 51887682--51887771 Score: 171
Period size: 43 Copynumber: 2.1 Consensus size: 43
51887672 TGCATTTATG
51887682 TCATCAAACAATGAGTTAACATAAAGTTTATTCACACATTAAA
1 TCATCAAACAATGAGTTAACATAAAGTTTATTCACACATTAAA
*
51887725 TCATCAAACAATGAGTTAACATAAAGTTTATTCACACATTAAC
1 TCATCAAACAATGAGTTAACATAAAGTTTATTCACACATTAAA
51887768 TCAT
1 TCAT
51887772 AATTTTTCAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (43 bp):
TCATCAAACAATGAGTTAACATAAAGTTTATTCACACATTAAA
Found at i:51889127 original size:21 final size:20
Alignment explanation
Indices: 51889103--51889142 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
51889093 AAAACTTGTA
51889103 AATCTATCAACAAACATTCAT
1 AATCTATCAACAAAC-TTCAT
*
51889124 AATCTATCAAGAAACTTCA
1 AATCTATCAACAAACTTCA
51889143 AAATACACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.47, C:0.23, G:0.03, T:0.28
Consensus pattern (20 bp):
AATCTATCAACAAACTTCAT
Found at i:51891155 original size:10 final size:10
Alignment explanation
Indices: 51891143--51891224 Score: 67
Period size: 10 Copynumber: 7.6 Consensus size: 10
51891133 TTCAAAATTT
*
51891143 AAAAAAAAAT
1 AAAAAAAAAC
51891153 AAATAAAAAAC
1 AAA-AAAAAAC
*
51891164 AAAAAAACAC
1 AAAAAAAAAC
*
51891174 AAAAAAAGAAGA
1 AAAAAAA-AA-C
51891186 AGAAAACAAAAC
1 A-AAAA-AAAAC
51891198 AACAAAAAAA-
1 AA-AAAAAAAC
51891208 AACAAAAAAAC
1 AA-AAAAAAAC
51891219 AAAAAA
1 AAAAAA
51891225 TGCCAAAAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
10 30 0.50
11 17 0.28
12 5 0.08
13 6 0.10
14 2 0.03
ACGTcount: A:0.84, C:0.10, G:0.04, T:0.02
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:51891170 original size:8 final size:8
Alignment explanation
Indices: 51891157--51891224 Score: 55
Period size: 9 Copynumber: 7.6 Consensus size: 8
51891147 AAAAATAAAT
51891157 AAAAAACAA
1 AAAAAAC-A
51891166 AAAAACACA
1 AAAAA-ACA
*
51891175 AAAAAAGAA
1 AAAAAA-CA
51891184 GAAGAAAACA
1 -AA-AAAACA
*
51891194 AAACAACAAA
1 AAA-AA-ACA
51891204 AAAAAACA
1 AAAAAACA
51891212 AAAAAACA
1 AAAAAACA
51891220 AAAAA
1 AAAAA
51891225 TGCCAAAAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
8 17 0.35
9 18 0.37
10 10 0.20
11 4 0.08
ACGTcount: A:0.84, C:0.12, G:0.04, T:0.00
Consensus pattern (8 bp):
AAAAAACA
Found at i:51891178 original size:29 final size:26
Alignment explanation
Indices: 51891144--51891224 Score: 90
Period size: 29 Copynumber: 2.9 Consensus size: 26
51891134 TCAAAATTTA
51891144 AAAAAAAATAAATAAAAAACAAAAAAAC
1 AAAAAAAA-AAA-AAAAAACAAAAAAAC
* *
51891172 ACAAAAAAAGAAGAAGAAAACAAAACAAC
1 A-AAAAAAA-AA-AAAAAAACAAAAAAAC
*
51891201 AAAAAAAAACAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAACAAAAAA
51891225 TGCCAAAAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
26 12 0.27
27 1 0.02
28 8 0.18
29 23 0.51
30 1 0.02
ACGTcount: A:0.84, C:0.10, G:0.04, T:0.02
Consensus pattern (26 bp):
AAAAAAAAAAAAAAAAACAAAAAAAC
Found at i:51891196 original size:26 final size:26
Alignment explanation
Indices: 51891158--51891222 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
51891148 AAAATAAATA
* *
51891158 AAAAACAAAAAAAC-ACAAAAAAAGAAG
1 AAAAA-AACAAAACAACAAAAAAA-AAC
*
51891185 AAGAAAACAAAACAACAAAAAAAAAC
1 AAAAAAACAAAACAACAAAAAAAAAC
51891211 AAAAAAACAAAA
1 AAAAAAACAAAA
51891223 AATGCCAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.83, C:0.12, G:0.05, T:0.00
Consensus pattern (26 bp):
AAAAAAACAAAACAACAAAAAAAAAC
Found at i:51893195 original size:88 final size:88
Alignment explanation
Indices: 51893081--51893579 Score: 885
Period size: 88 Copynumber: 5.7 Consensus size: 88
51893071 ATCTGAGCTT
51893081 CGTTGAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAGGAAGCAGATCGAAGACATAG
1 CGTTGAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAGGAAGCAGATCGAAGACATAG
51893146 CTGATTTGGCTTTCACGTGTTTA
66 CTGATTTGGCTTTCACGTGTTTA
51893169 CGTTGAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAGGAAGCAGATCGAAGACATAG
1 CGTTGAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAGGAAGCAGATCGAAGACATAG
51893234 CTGATTTGGCTTTCACGTGTTTA
66 CTGATTTGGCTTTCACGTGTTTA
51893257 CGTTGAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAGGAAGCAGATCGAAGACATAG
1 CGTTGAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAGGAAGCAGATCGAAGACATAG
51893322 CTGATTTGGCTTTCACGTGTTTA
66 CTGATTTGGCTTTCACGTGTTTA
51893345 CGTTGAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAGGAAGCAGATCGAAGACATAG
1 CGTTGAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAGGAAGCAGATCGAAGACATAG
51893410 CTGATTTGGCTTTCACGTGTTTA
66 CTGATTTGGCTTTCACGTGTTTA
* * * * *
51893433 CGTTGAAGCAGATCCAAGATGATTTGGCATCTTTGTACCAGGCGGGAAGCAGATTGAAGACATAG
1 CGTTGAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAGGAAGCAGATCGAAGACATAG
51893498 CTGATTTGGCTTTCACGTGTTTA
66 CTGATTTGGCTTTCACGTGTTTA
* * * * *
51893521 CGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTAGC-GGC-GGAGAGCAGATCGAAGA
1 CGTTGAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAGGA-AGCAGATCGAAGA
51893580 TTGCAGATTT
Statistics
Matches: 399, Mismatches: 11, Indels: 3
0.97 0.03 0.01
Matches are distributed among these distances:
86 3 0.01
87 15 0.04
88 381 0.95
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (88 bp):
CGTTGAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAGGAAGCAGATCGAAGACATAG
CTGATTTGGCTTTCACGTGTTTA
Found at i:51893218 original size:41 final size:41
Alignment explanation
Indices: 51893085--51893404 Score: 157
Period size: 41 Copynumber: 7.4 Consensus size: 41
51893075 GAGCTTCGTT
51893085 GAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAG
1 GAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAG
* * * * * * **
51893126 GAAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT-TTACG-TT
1 GAAGCAGATC-----CA-AGATGATTTGGC-ATCTC-TATATCAGGCAG
51893173 GAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAG
1 GAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAG
* * * * * * **
51893214 GAAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT-TTACG-TT
1 GAAGCAGATC-----CA-AGATGATTTGGC-ATCTC-TATATCAGGCAG
51893261 GAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAG
1 GAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAG
* * * * * * **
51893302 GAAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT-TTACG-TT
1 GAAGCAGATC-----CA-AGATGATTTGGC-ATCTC-TATATCAGGCAG
51893349 GAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAG
1 GAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAG
*
51893390 GAAGCAGATCGAAGA
1 GAAGCAGATCCAAGA
51893405 CATAGCTGAT
Statistics
Matches: 200, Mismatches: 49, Indels: 60
0.65 0.16 0.19
Matches are distributed among these distances:
39 6 0.03
40 18 0.09
41 77 0.38
42 6 0.03
46 6 0.03
47 63 0.31
48 18 0.09
49 6 0.03
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (41 bp):
GAAGCAGATCCAAGATGATTTGGCATCTCTATATCAGGCAG
Found at i:51893822 original size:132 final size:132
Alignment explanation
Indices: 51893582--51894750 Score: 1660
Period size: 132 Copynumber: 9.1 Consensus size: 132
51893572 ATCGAAGATT
* * * * * * *
51893582 GCAGATTTAGCATCCCTATGTTTATAGGGAACAAATCAAAGATAGCAGATCTGACATTCCCGTGC
1 GCAGATTTGGCATCCTTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
51893647 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
51893712 TA
131 TA
* *
51893714 GCAGATTTGGCATCCTTGTGCTTATAGGGAATAGATCGAAGATAACAGATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCTTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
* *
51893779 TTACAGTGAAGTAGATCGAAGATTTCAGCATGGCATCCATGTGCTTATAGGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
51893844 TA
131 TA
* * * * * *
51893846 ACAGATTTGGCATCAC-TGTGTTTATAGGGAACATATCGAAGATAGCAGATCTAACATTCTTGTA
1 GCAGATTTGGCATC-CTTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTG
* * *
51893910 CTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATTCTTGTGCTTATAGGGAACAAGTTGAAA
65 CTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAA
51893975 ATA
130 ATA
* * *
51893978 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGC
1 GCAGATTTGGCATCCTTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
*
51894043 TTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
51894108 TA
131 TA
* *
51894110 GCAGATTTGGCATCCTTGTGCTTATAGGGAATAGATCGAAGATAACAGATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCTTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
* *
51894175 TTACAGTGAAGTAGATCGAAGATTTCAGCATGGCATCCATGTGCTTATAGGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
51894240 TA
131 TA
* * * * * *
51894242 ACAGATTTGGCATCAC-TGTGTTTATAGGGAACATATCGAAGATAGCAGATCTAACATTCTTGTA
1 GCAGATTTGGCATC-CTTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTG
*
51894306 CTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAA
65 CTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAA
51894371 ATA
130 ATA
* * * *
51894374 ACAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTTC
1 GCAGATTTGGCATCCTTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
*
51894439 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAAGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
51894504 TA
131 TA
* * *
51894506 --A-A---AG-A---TT-TG---ATAGGGAACAGATCAAAGATAGTAGATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCTTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
*
51894557 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAAGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
51894622 TA
131 TA
* * *
51894624 --A-A---AG-A---TT-TG---ATAGGGAACAGATCAAAGATAGTAGATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCTTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
* *
51894675 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
51894740 TA
131 TA
*
51894742 GTAGATTTG
1 GCAGATTTG
51894751 ACCCCTTAAG
Statistics
Matches: 959, Mismatches: 68, Indels: 28
0.91 0.06 0.03
Matches are distributed among these distances:
118 220 0.23
120 1 0.00
121 3 0.00
122 1 0.00
125 1 0.00
126 1 0.00
129 1 0.00
130 1 0.00
131 2 0.00
132 726 0.76
133 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (132 bp):
GCAGATTTGGCATCCTTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
TA
Found at i:51894127 original size:396 final size:396
Alignment explanation
Indices: 51893582--51894750 Score: 1854
Period size: 396 Copynumber: 3.0 Consensus size: 396
51893572 ATCGAAGATT
* * * * * * *
51893582 GCAGATTTAGCATCCCTATGTTTATAGGGAACAAATCAAAGATAGCAGATCTGACATTCCCGTGC
1 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTGC
51893647 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
51893712 TAGCAGATTTGGCATCCTTGTGCTTATAGGGAATAGATCGAAGATAACAGATCTGACATTCCTGT
131 TAGCAGATTTGGCATCCTTGTGCTTATAGGGAATAGATCGAAGATAACAGATCTGACATTCCTGT
51893777 GCTTACAGTGAAGTAGATCGAAGATTTCAGCATGGCATCCATGTGCTTATAGGGAACAAGTTGAA
196 GCTTACAGTGAAGTAGATCGAAGATTTCAGCATGGCATCCATGTGCTTATAGGGAACAAGTTGAA
51893842 AATAACAGATTTGGCATCACTGTGTTTATAGGGAACATATCGAAGATAGCAGATCTAACATTCTT
261 AATAACAGATTTGGCATCACTGTGTTTATAGGGAACATATCGAAGATAGCAGATCTAACATTCTT
* *
51893907 GTACTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATTCTTGTGCTTATAGGGAACAAGTTG
326 GTACTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTG
51893972 AAAATA
391 AAAATA
*
51893978 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGC
1 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTGC
*
51894043 TTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
51894108 TAGCAGATTTGGCATCCTTGTGCTTATAGGGAATAGATCGAAGATAACAGATCTGACATTCCTGT
131 TAGCAGATTTGGCATCCTTGTGCTTATAGGGAATAGATCGAAGATAACAGATCTGACATTCCTGT
51894173 GCTTACAGTGAAGTAGATCGAAGATTTCAGCATGGCATCCATGTGCTTATAGGGAACAAGTTGAA
196 GCTTACAGTGAAGTAGATCGAAGATTTCAGCATGGCATCCATGTGCTTATAGGGAACAAGTTGAA
51894238 AATAACAGATTTGGCATCACTGTGTTTATAGGGAACATATCGAAGATAGCAGATCTAACATTCTT
261 AATAACAGATTTGGCATCACTGTGTTTATAGGGAACATATCGAAGATAGCAGATCTAACATTCTT
51894303 GTACTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTG
326 GTACTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTG
51894368 AAAATA
391 AAAATA
* *
51894374 ACAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTTC
1 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTGC
*
51894439 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAAGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
* * * **
51894504 TA--A-A---AG-A---TT-TG---ATAGGGAACAGATCAAAGATAGTAGATCTGACATTCCTGT
131 TAGCAGATTTGGCATCCTTGTGCTTATAGGGAATAGATCGAAGATAACAGATCTGACATTCCTGT
* * *
51894555 GCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAAGGAACAAGTTGAA
196 GCTTACAGTGAAGTAGATCGAAGATTTCAGCATGGCATCCATGTGCTTATAGGGAACAAGTTGAA
* * * * *
51894620 AATAA-A-A----G-AT---T-TG---ATAGGGAACAGATCAAAGATAGTAGATCTGACATTCCT
261 AATAACAGATTTGGCATCACTGTGTTTATAGGGAACATATCGAAGATAGCAGATCTAACATTCTT
* * *
51894671 GTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTG
326 GTACTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTG
*
51894736 AAGATA
391 AAAATA
*
51894742 GTAGATTTG
1 GCAGATTTG
51894751 ACCCCTTAAG
Statistics
Matches: 738, Mismatches: 35, Indels: 28
0.92 0.04 0.03
Matches are distributed among these distances:
368 107 0.14
371 2 0.00
372 1 0.00
375 2 0.00
376 1 0.00
380 1 0.00
381 1 0.00
382 103 0.14
385 2 0.00
386 2 0.00
389 1 0.00
390 1 0.00
393 1 0.00
394 1 0.00
396 512 0.69
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (396 bp):
GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTGC
TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
TAGCAGATTTGGCATCCTTGTGCTTATAGGGAATAGATCGAAGATAACAGATCTGACATTCCTGT
GCTTACAGTGAAGTAGATCGAAGATTTCAGCATGGCATCCATGTGCTTATAGGGAACAAGTTGAA
AATAACAGATTTGGCATCACTGTGTTTATAGGGAACATATCGAAGATAGCAGATCTAACATTCTT
GTACTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTG
AAAATA
Found at i:51894605 original size:118 final size:118
Alignment explanation
Indices: 51894397--51894751 Score: 629
Period size: 118 Copynumber: 3.0 Consensus size: 118
51894387 CCCTGTGCTT
* ** *
51894397 ATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTTCTTACAGTGAAGCAGATCGAAGAT
1 ATAGGGAACAGATCAAAGATAGTAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGAT
51894462 TTCAGCATGGCATCCCTGTGCTTATAAGGAACAAGTTGAAAATAAAAGATTTG
66 TTCAGCATGGCATCCCTGTGCTTATAAGGAACAAGTTGAAAATAAAAGATTTG
51894515 ATAGGGAACAGATCAAAGATAGTAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGAT
1 ATAGGGAACAGATCAAAGATAGTAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGAT
51894580 TTCAGCATGGCATCCCTGTGCTTATAAGGAACAAGTTGAAAATAAAAGATTTG
66 TTCAGCATGGCATCCCTGTGCTTATAAGGAACAAGTTGAAAATAAAAGATTTG
51894633 ATAGGGAACAGATCAAAGATAGTAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGAT
1 ATAGGGAACAGATCAAAGATAGTAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGAT
* * * **
51894698 TTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATTTG
66 TTCAGCATGGCATCCCTGTGCTTATAAGGAACAAGTTGAAAATAAAAGATTTG
51894751 A
1 A
51894752 CCCCTTAAGC
Statistics
Matches: 228, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
118 228 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.26
Consensus pattern (118 bp):
ATAGGGAACAGATCAAAGATAGTAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGAT
TTCAGCATGGCATCCCTGTGCTTATAAGGAACAAGTTGAAAATAAAAGATTTG
Found at i:51894848 original size:87 final size:87
Alignment explanation
Indices: 51894751--51895758 Score: 1126
Period size: 87 Copynumber: 11.7 Consensus size: 87
51894741 AGTAGATTTG
* * *
51894751 ACCCCTTAAGCAGTAGGGAAACAGATCGAAAGTGATGGGCCTT-AACTCCCTAAGTAGTAGGGTA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGTGATGAGCCTTAAAC-CCCTAAGCAGTAGGGTA
51894815 ACAGGCTAAATTTACAGATCTTA
65 ACAGGCTAAATTTACAGATCTTA
* *
51894838 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGTGATGGGCCTT-AACTCCCTAAGTAGTAGGGTA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGTGATGAGCCTTAAAC-CCCTAAGCAGTAGGGTA
51894902 ACAGGCTAAATTTACAGATCTTA
65 ACAGGCTAAATTTACAGATCTTA
* * * * * * *
51894925 ACCCCCTAAGTAGTAGGGAAACAAATCGAAAGCGACGGGCCTT-AACTCCCTAAGTAGAAGGGTA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGTGATGAGCCTTAAAC-CCCTAAGCAGTAGGGTA
51894989 ACAGGCTAAATTTACAGATCTTA
65 ACAGGCTAAATTTACAGATCTTA
* * *
51895012 ACCCCCTAAGCAGTAGGG-AATAGATC-AAAG-GCAATGAACCTTAAACCCCTAAGTAGTAGGGT
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGTG--ATGAGCCTTAAACCCCTAAGCAGTAGGGT
* **
51895074 AACAGGTTGGATTTACAGATCTTA
64 AACAGGCTAAATTTACAGATCTTA
51895098 ACCCCCTAAGCAGTAGGGAAACAGATC-AAAG-GCAATG-GACCTTAAACCCCTAAGCAGTAGGG
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGTG--ATGAG-CCTTAAACCCCTAAGCAGTAGGG
* * *
51895160 TAATAGG-TGGAATTTATAGATCTTA
63 TAACAGGCT-AAATTTACAGATCTTA
* *
51895185 ACCCCCTAAGCAGTAGGGAATCAGATC-AAAGGCGATG-GACCTTAAACCCCTAAGCAGTAGGGT
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAA-GTGATGAG-CCTTAAACCCCTAAGCAGTAGGGT
* *
51895248 AATAGGCTGAATTTACAGATCTTA
64 AACAGGCTAAATTTACAGATCTTA
* * * *
51895272 ACCCCATAAGCAGTAGGGAAACAGATC-AAAGACGATAAGCCTTAAACCCCTAAGTAGTAGGGTA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAG-TGATGAGCCTTAAACCCCTAAGCAGTAGGGTA
* *
51895336 ACAGGTTAAATTTATAG------
65 ACAGGCTAAATTTACAGATCTTA
* * **
51895353 A--CCCTAAACAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGTGATGAGCCTTAAACCCCTAAGCAGTAGGGTAA
51895416 CAGGCTGAAGATTTACAGATCTTAA
66 CAGGCT-AA-ATTTACAGATCTT-A
* ** *
51895441 ACCCCCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTT-AACCCCTAAACAGTAGGGTAA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGTGATGAGCCTTAAACCCCTAAGCAGTAGGGTAA
51895505 CAGGCTAAATTTACAG------
66 CAGGCTAAATTTACAGATCTTA
* * * **
51895521 A--CCCTAAACAGTAGGGAAATAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGTGATGAGCCTTAAACCCCTAAGCAGTAGGGTAA
*
51895584 TAGGCTGAAGATTTACAGATCTTAA
66 CAGGCT-AA-ATTTACAGATCTT-A
* * * ** *
51895609 ACCCCCTAAGCAGTAGGGTAATAGATCGAAGGTGACAAGCCTT-AACCCCTAAACAGTAGGGTAA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGTGATGAGCCTTAAACCCCTAAGCAGTAGGGTAA
51895673 CAGGCTAAATTTACAGATCTTA
66 CAGGCTAAATTTACAGATCTTA
** * *
51895695 ACATCCTAAGCAGTAGGGAAACAGATCG-AAGACGATGGGCCTTAAACCCCTAAGCAGTAGGGTA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAG-TGATGAGCCTTAAACCCCTAAGCAGTAGGGTA
51895759 CCAAGCTGAA
Statistics
Matches: 824, Mismatches: 60, Indels: 74
0.86 0.06 0.08
Matches are distributed among these distances:
78 38 0.05
79 82 0.10
80 8 0.01
81 16 0.02
84 1 0.00
85 6 0.01
86 100 0.12
87 435 0.53
88 9 0.01
89 52 0.06
90 77 0.09
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.20
Consensus pattern (87 bp):
ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGTGATGAGCCTTAAACCCCTAAGCAGTAGGGTAA
CAGGCTAAATTTACAGATCTTA
Found at i:51895413 original size:79 final size:79
Alignment explanation
Indices: 51895278--51895758 Score: 444
Period size: 79 Copynumber: 5.7 Consensus size: 79
51895268 CTTAACCCCA
* ** * *
51895278 TAAGCAGTAGGGAAACAGATCAAAGACGATAAGCCTTAAACCCCTAAGTAGTAGGGTAACAGGTT
1 TAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGTT
51895343 AAATTTATAGACCC
66 AAATTTATAGACCC
*
51895357 TAAACAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCT
1 TAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGG-T
* *
51895422 GAAGATTTACAGATCTTAAACCCCC
65 TAA-ATTT----A---TAGA--CCC
* *
51895447 TAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTT-AACCCCTAAACAGTAGGGTAACAGGCT
1 TAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGTT
*
51895511 AAATTTACAGACCC
66 AAATTTATAGACCC
* * *
51895525 TAAACAGTAGGGAAATAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAATAGGCT
1 TAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGG-T
* *
51895590 GAAGATTTACAGATCTTAAACCCCC
65 TAA-ATTT----A---TAGA--CCC
* * * *
51895615 TAAGCAGTAGGGTAATAGATCGAAGGTGACAAGCCTT-AACCCCTAAACAGTAGGGTAACAGGCT
1 TAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGTT
*
51895679 AAATTTACAGATCTTAACATCC
66 AAATTTATAG------AC--CC
** ***
51895701 TAAGCAGTAGGGAAACAGATCGAAGACGATGGGCCTTAAACCCCTAAGCAGTAGGGTA
1 TAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTA
51895759 CCAAGCTGAA
Statistics
Matches: 332, Mismatches: 38, Indels: 56
0.78 0.09 0.13
Matches are distributed among these distances:
78 38 0.11
79 80 0.24
80 8 0.02
81 8 0.02
83 2 0.01
84 1 0.00
85 2 0.01
86 33 0.10
87 27 0.08
88 9 0.03
89 47 0.14
90 77 0.23
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.19
Consensus pattern (79 bp):
TAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGTT
AAATTTATAGACCC
Found at i:51895455 original size:46 final size:44
Alignment explanation
Indices: 51895390--51895718 Score: 203
Period size: 43 Copynumber: 7.6 Consensus size: 44
51895380 AGGTGACAAG
51895390 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGA
1 CCTT-AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGA
* * * * *
51895435 TCTTAAACCCCCTAAGCAGTAGGGAAACA-GATCGAAG-GTGACA-A
1 CCTT-AA-CCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGA
*
51895479 GCCTTAACCCCTAAACAGTAGGGTAACAGGCT-AA-ATTTACAG-
1 -CCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGA
* * * * * *
51895521 -----A-CCCTAAACAGTAGGGAAATA-GATCGAAG-GTGACA-A
1 CCTTAACCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGA
*
51895557 GCCTTAAACCCCTAAGCAGTAGGGTAATAGGCTGAAGATTTACAGA
1 -CCTT-AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGA
* * * * *
51895603 TCTTAAACCCCCTAAGCAGTAGGGTAATA-GATCGAAG-GTGACA-A
1 CCTT-AA-CCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGA
*
51895647 GCCTTAACCCCTAAACAGTAGGGTAACAGGCT-AA-ATTTACAGA
1 -CCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGA
* * *
51895690 TCTTAACATCCTAAGCAGTAGGGAAACAG
1 CCTTAAC-CCCTAAGCAGTAGGGTAACAG
51895719 ATCGAAGACG
Statistics
Matches: 221, Mismatches: 35, Indels: 58
0.70 0.11 0.18
Matches are distributed among these distances:
34 2 0.01
35 18 0.08
36 7 0.03
42 18 0.08
43 58 0.26
44 32 0.14
45 36 0.16
46 50 0.23
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (44 bp):
CCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGA
Found at i:51896339 original size:18 final size:18
Alignment explanation
Indices: 51896288--51896340 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
51896278 AAACCCTAGC
51896288 CACCTTGCCTCCCACTTG
1 CACCTTGCCTCCCACTTG
*
51896306 CACC-T-ACT-CCAC---
1 CACCTTGCCTCCCACTTG
51896318 CACCTTGCCTCCCACTTG
1 CACCTTGCCTCCCACTTG
51896336 CACCT
1 CACCT
51896341 ACACCATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 12
0.66 0.05 0.29
Matches are distributed among these distances:
12 4 0.15
13 1 0.04
14 2 0.07
15 8 0.30
16 2 0.07
17 1 0.04
18 9 0.33
ACGTcount: A:0.15, C:0.53, G:0.08, T:0.25
Consensus pattern (18 bp):
CACCTTGCCTCCCACTTG
Found at i:51896927 original size:39 final size:40
Alignment explanation
Indices: 51896801--51896934 Score: 162
Period size: 40 Copynumber: 3.4 Consensus size: 40
51896791 GGGAAAGAGN
* *
51896801 AGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTA
1 AGTCCCGAAGGCATTCGTGCGAGTTATTAAAACCGGGTTA
* * *
51896841 AGTCCCGAAGGCATTCGTGCGGGTTGTTAAATCCGGGTTA
1 AGTCCCGAAGGCATTCGTGCGAGTTATTAAAACCGGGTTA
* * * * *
51896881 CGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTA
1 AGTCCCGAAGGCATTCGTGCGAGTTATTAAAACCGGGTTA
*
51896920 TGTCCCGAAGGCATT
1 AGTCCCGAAGGCATT
51896935 TGAACAAGGA
Statistics
Matches: 80, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 31 0.39
40 49 0.61
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.25
Consensus pattern (40 bp):
AGTCCCGAAGGCATTCGTGCGAGTTATTAAAACCGGGTTA
Found at i:51897502 original size:14 final size:16
Alignment explanation
Indices: 51897478--51897509 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
51897468 ATGATTTAAT
51897478 AATTGAAATAAAA-AG
1 AATTGAAATAAAAGAG
51897493 AATT-AAATAAAAGAG
1 AATTGAAATAAAAGAG
51897508 AA
1 AA
51897510 GAAGGAGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.69, C:0.00, G:0.12, T:0.19
Consensus pattern (16 bp):
AATTGAAATAAAAGAG
Found at i:51899455 original size:40 final size:40
Alignment explanation
Indices: 51899410--51899528 Score: 202
Period size: 40 Copynumber: 3.0 Consensus size: 40
51899400 ATTATTGATA
*
51899410 TATGCGAGTTGATATATCCGGGCTAAAACCCGAAGGCAAT
1 TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
51899450 TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
1 TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
* * *
51899490 TATGCGAGTTGATATGTCCGGGTTGAGACCCGAAGGCAA
1 TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
51899529 CTGTGTTTGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (40 bp):
TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
Found at i:51899743 original size:156 final size:156
Alignment explanation
Indices: 51899459--51899772 Score: 619
Period size: 156 Copynumber: 2.0 Consensus size: 156
51899449 TTATGCGAGT
*
51899459 TGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATGTCCGGGTTGAGACCCGAA
1 TGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGTTGAGACCCGAA
51899524 GGCAACTGTGTTTGCGGCTGTATTCGGTTAAATACCGAAGAAACTTGGGTTTGAATGTGAGCGTT
66 GGCAACTGTGTTTGCGGCTGTATTCGGTTAAATACCGAAGAAACTTGGGTTTGAATGTGAGCGTT
51899589 TTGTGCTGTAACTAATTCAATAAATA
131 TTGTGCTGTAACTAATTCAATAAATA
51899615 TGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGTTGAGACCCGAA
1 TGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGTTGAGACCCGAA
51899680 GGCAACTGTGTTTGCGGCTGTATTCGGTTAAATACCGAAGAAACTTGGGTTTGAATGTGAGCGTT
66 GGCAACTGTGTTTGCGGCTGTATTCGGTTAAATACCGAAGAAACTTGGGTTTGAATGTGAGCGTT
51899745 TTGTGCTGTAACTAATTCAATAAATA
131 TTGTGCTGTAACTAATTCAATAAATA
51899771 TG
1 TG
51899773 CTCAACCAAC
Statistics
Matches: 157, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
156 157 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (156 bp):
TGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGTTGAGACCCGAA
GGCAACTGTGTTTGCGGCTGTATTCGGTTAAATACCGAAGAAACTTGGGTTTGAATGTGAGCGTT
TTGTGCTGTAACTAATTCAATAAATA
Found at i:51908282 original size:64 final size:64
Alignment explanation
Indices: 51908181--51908305 Score: 146
Period size: 64 Copynumber: 2.0 Consensus size: 64
51908171 ATTAAATAAG
* * * *
51908181 ATGCTTCTTAATTGATCTAGTTCCTAGGATTATTTATTG-ATACATGAGTTAAGTTCATTTAATT
1 ATGCTTCTTAATTAAACTAGTTCCTAGGAATAATTATTGCATACATG-GTTAAGTTCATTTAATT
* * * *
51908245 ATGCTTCTTTAATTAAACTAGTTGCT-GGAATAATTATTGCATATATGTTTTAGTTCATTTA
1 ATGCTTC-TTAATTAAACTAGTTCCTAGGAATAATTATTGCATACATGGTTAAGTTCATTTA
51908306 TTTAAGTAAG
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
64 30 0.59
65 21 0.41
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (64 bp):
ATGCTTCTTAATTAAACTAGTTCCTAGGAATAATTATTGCATACATGGTTAAGTTCATTTAATT
Found at i:51909141 original size:64 final size:64
Alignment explanation
Indices: 51909069--51909196 Score: 229
Period size: 64 Copynumber: 2.0 Consensus size: 64
51909059 CCTTTAACCA
*
51909069 AAAAACACCTAAAAACCATTTTGAGATTCGGGTCAACAATTCGTTATTATTGGTTCATTTTCGG
1 AAAAACACCTAAAAACCATTTTGAGATTCGGGTCAACAATTCGTTATTATTGGCTCATTTTCGG
* *
51909133 AAAAACACCTAAAGACCATTTTGAGATTCGGGTCAACAATTCGTTATTGTTGGCTCATTTTCGG
1 AAAAACACCTAAAAACCATTTTGAGATTCGGGTCAACAATTCGTTATTATTGGCTCATTTTCGG
51909197 TCTTAGCCAA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (64 bp):
AAAAACACCTAAAAACCATTTTGAGATTCGGGTCAACAATTCGTTATTATTGGCTCATTTTCGG
Found at i:51909518 original size:15 final size:14
Alignment explanation
Indices: 51909498--51909533 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
51909488 ATCAAGTTGA
51909498 AAAAAAAATTTCGTG
1 AAAAAAAA-TTCGTG
51909513 AAAAAAAATTCGTG
1 AAAAAAAATTCGTG
51909527 AAAAAAA
1 AAAAAAA
51909534 GAAGAAGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.64, C:0.06, G:0.11, T:0.19
Consensus pattern (14 bp):
AAAAAAAATTCGTG
Found at i:51911989 original size:29 final size:28
Alignment explanation
Indices: 51911953--51912030 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
51911943 TCATGAGATT
51911953 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
51911983 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
51912010 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
51912031 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:51912248 original size:174 final size:174
Alignment explanation
Indices: 51911983--51912484 Score: 914
Period size: 174 Copynumber: 2.9 Consensus size: 174
51911973 AAATTGTACA
*
51911983 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
51912048 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
51912113 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAGTGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
51912157 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
51912222 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACACTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
51912287 TTTTAGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
51912331 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * * *
51912396 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCAAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
51912461 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
51912485 ACCTTGAGTT
Statistics
Matches: 314, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 314 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:51922631 original size:50 final size:50
Alignment explanation
Indices: 51922570--51922669 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
51922560 TTATTTTGTT
*
51922570 TATTTCCTTTGTTTGAAGCCATTATCTCTATTTTGTTTCATTTTAAAACC
1 TATTACCTTTGTTTGAAGCCATTATCTCTATTTTGTTTCATTTTAAAACC
51922620 TATTACCTTTGTTTGAAGCCATTATCTCTATTTTGTTTCATTTTAAAACC
1 TATTACCTTTGTTTGAAGCCATTATCTCTATTTTGTTTCATTTTAAAACC
51922670 GAAACGAATC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.23, C:0.18, G:0.08, T:0.51
Consensus pattern (50 bp):
TATTACCTTTGTTTGAAGCCATTATCTCTATTTTGTTTCATTTTAAAACC
Found at i:51926335 original size:13 final size:13
Alignment explanation
Indices: 51926319--51926377 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 13
51926309 CTTTTCTTCT
51926319 ATTTTTTTCATGA
1 ATTTTTTTCATGA
*
51926332 ATTTTTTTTCACG-
1 A-TTTTTTTCATGA
*
51926345 ATTTTTTT-TTGAA
1 ATTTTTTTCATG-A
51926358 ATTTTTTT--TGA
1 ATTTTTTTCATGA
51926369 ATTTTTTTC
1 ATTTTTTTC
51926378 TCAAATACTT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
11 10 0.26
12 9 0.23
13 10 0.26
14 10 0.26
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.68
Consensus pattern (13 bp):
ATTTTTTTCATGA
Found at i:51930336 original size:16 final size:16
Alignment explanation
Indices: 51930315--51930346 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51930305 GTTTTGTTGC
*
51930315 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
51930331 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
51930347 CTTTCGATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:51936375 original size:47 final size:47
Alignment explanation
Indices: 51936273--51936365 Score: 123
Period size: 47 Copynumber: 2.0 Consensus size: 47
51936263 TTTACATATG
* *
51936273 GATGCCATAGCCCAGCTATGGTCTTACACAGTAGCACATATCACACC
1 GATGCCATAGCCCAGATATGGTCTTACACAGAAGCACATATCACACC
* * * *
51936320 GATGCCATATCCCAGATATGGTCTTATACGGAAATCACATATCACA
1 GATGCCATAGCCCAGATATGGTCTTACACAG-AAGCACATATCACA
51936366 TGTTGCCATA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 27 0.69
48 12 0.31
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (47 bp):
GATGCCATAGCCCAGATATGGTCTTACACAGAAGCACATATCACACC
Found at i:51939712 original size:42 final size:42
Alignment explanation
Indices: 51939632--51939713 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
51939622 CGTTTTCTCT
* **
51939632 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
*
51939674 ATGCCATAGCCCAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
51939714 CACACCGATG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 33 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:51939774 original size:47 final size:47
Alignment explanation
Indices: 51939673--51939765 Score: 123
Period size: 47 Copynumber: 2.0 Consensus size: 47
51939663 TTTACATATT
* *
51939673 GATGCCATAGCCCAGCTATGGTCTTACACAGTAGCACATATCACACC
1 GATGCCATAGCCCAGATATGGTCTTACACAGAAGCACATATCACACC
* * * *
51939720 GATGCCATATCCCAGATATGGTCTTATACGGAAATCACATATCACA
1 GATGCCATAGCCCAGATATGGTCTTACACAG-AAGCACATATCACA
51939766 TGTTGCCATG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 27 0.69
48 12 0.31
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (47 bp):
GATGCCATAGCCCAGATATGGTCTTACACAGAAGCACATATCACACC
Found at i:51942525 original size:16 final size:16
Alignment explanation
Indices: 51942504--51942535 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51942494 GTTTTGTTAC
*
51942504 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
51942520 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
51942536 CTTTTAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:51942732 original size:46 final size:43
Alignment explanation
Indices: 51942659--51942757 Score: 119
Period size: 46 Copynumber: 2.2 Consensus size: 43
51942649 AATAATAACA
*
51942659 GATACACGGTGGATTCAGCACACAGCAACCACCCTTTGTAATCAAT
1 GATAC-CGGTGGATTCAGCACACAGCAACCA-CC-TTATAATCAAT
* *
51942705 GATATCCGGTGCGA-TCAGCACATAGCAACCACCTTATAATTAAT
1 GATA-CCGGTG-GATTCAGCACACAGCAACCACCTTATAATCAAT
51942749 GATACCGGT
1 GATACCGGT
51942758 CCACATAGTA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
43 5 0.10
44 13 0.27
45 2 0.04
46 25 0.52
47 3 0.06
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (43 bp):
GATACCGGTGGATTCAGCACACAGCAACCACCTTATAATCAAT
Found at i:51942821 original size:51 final size:50
Alignment explanation
Indices: 51942753--51942935 Score: 201
Period size: 51 Copynumber: 3.6 Consensus size: 50
51942743 ATTAATGATA
* * *
51942753 CCGGTCCACATAGTAGCCTACACATAGTACTACACATGTGACCATCACTGT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACT-T
* *
51942804 CCGATACACGTAGTAGCCTGCACATAGTACTACACATGTGATCGA--AGCTAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCATCA-CT-T
* * * *
51942855 CCGGTACGCATAGTAGCCTGCACATTGTACTACACATGCGACCTATCA-TT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTT
* *
51942905 CTGGTACTCGTAGTAGCCTGCACATAGTACT
1 CCGGTACACGTAGTAGCCTGCACATAGTACT
51942936 TCGCACATGA
Statistics
Matches: 111, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
50 30 0.27
51 78 0.70
52 2 0.02
53 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (50 bp):
CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACTT
Found at i:51972991 original size:3 final size:3
Alignment explanation
Indices: 51972983--51973012 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
51972973 TGATTCACCG
51972983 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
51973013 CTTTCTCCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
TCA
Found at i:51974611 original size:72 final size:72
Alignment explanation
Indices: 51974428--51974709 Score: 422
Period size: 72 Copynumber: 3.9 Consensus size: 72
51974418 TTAATCTAGT
* *
51974428 ATAAATAAGTAGAACATAAATTTAATA-CCAAAAAACCAAACATAAACAATTATTGATAAAACTA
1 ATAAATAAGTAGAACATAAATTCAATATCC-AAAAACCAAACATAAACAACTATTGATAAAACTA
** *
51974492 GCCCTAAGC
65 G-ATTAAAC
* * *
51974501 ATAAATAATTAGACCATAAATTCAATATCCAAAGACCAAACATAAACAACTATTGATAAAACTAG
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
51974566 ATTAAAC
66 ATTAAAC
* *
51974573 ATAAATAAGTAAAACATAAATTCAATATCCAAAAACCAAACATAAACAACCATTGATAAAACTAG
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
*
51974638 ATTAGAC
66 ATTAAAC
* *
51974645 ATAAATAAGTAGAACATAAATTCAATACCCAAAAACCAAACATAAATAACTATTGATAAAACTAG
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
51974710 TTTAGCATTG
Statistics
Matches: 190, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
72 131 0.69
73 57 0.30
74 2 0.01
ACGTcount: A:0.56, C:0.16, G:0.06, T:0.22
Consensus pattern (72 bp):
ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
ATTAAAC
Found at i:51991857 original size:21 final size:21
Alignment explanation
Indices: 51991817--51991859 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
51991807 TTTTACCTTA
*
51991817 AATATGAATTGGACTGAATTG
1 AATATGAATTGGACTAAATTG
* *
51991838 AATATGAATTGTATTAAATTG
1 AATATGAATTGGACTAAATTG
51991859 A
1 A
51991860 GTTAAATTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.02, G:0.19, T:0.37
Consensus pattern (21 bp):
AATATGAATTGGACTAAATTG
Found at i:51994756 original size:34 final size:35
Alignment explanation
Indices: 51994713--51994779 Score: 127
Period size: 34 Copynumber: 1.9 Consensus size: 35
51994703 GTATTAAAAA
51994713 TTCTATAAAATTTCTGT-AAAATCAAACAATCAAT
1 TTCTATAAAATTTCTGTAAAAATCAAACAATCAAT
51994747 TTCTATAAAATTTCTGTAAAAATCAAACAATCA
1 TTCTATAAAATTTCTGTAAAAATCAAACAATCA
51994780 GAAAACAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 17 0.53
35 15 0.47
ACGTcount: A:0.48, C:0.15, G:0.03, T:0.34
Consensus pattern (35 bp):
TTCTATAAAATTTCTGTAAAAATCAAACAATCAAT
Found at i:51995743 original size:17 final size:17
Alignment explanation
Indices: 51995721--51995754 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51995711 CACTAACATG
51995721 AAAATGTAATGAAAATA
1 AAAATGTAATGAAAATA
*
51995738 AAAATGTAATGACAATA
1 AAAATGTAATGAAAATA
51995755 TATACTTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.24
Consensus pattern (17 bp):
AAAATGTAATGAAAATA
Found at i:51996236 original size:3 final size:3
Alignment explanation
Indices: 51996159--51996213 Score: 76
Period size: 3 Copynumber: 18.3 Consensus size: 3
51996149 CTCAACAAAG
*
51996159 TCT TCT TCT TCT TTT TCT TCT TCT TCCT T-T TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT T-CT TCT TCT TCT TCT TCT TCT
*
51996204 TGT TCT TCT T
1 TCT TCT TCT T
51996214 TCTCATTTTC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
2 2 0.04
3 41 0.89
4 3 0.07
ACGTcount: A:0.00, C:0.29, G:0.02, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:52009605 original size:17 final size:17
Alignment explanation
Indices: 52009585--52009622 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
52009575 GATTTCTATC
* *
52009585 ATTTGTTTATTTTTATT
1 ATTTCTTTATTTTCATT
52009602 ATTTCTTTATTTTCATT
1 ATTTCTTTATTTTCATT
52009619 ATTT
1 ATTT
52009623 ATTTTTATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTCTTTATTTTCATT
Found at i:52010888 original size:12 final size:12
Alignment explanation
Indices: 52010871--52010897 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
52010861 TCGTATCCCA
52010871 GCCCGTGTCCGT
1 GCCCGTGTCCGT
52010883 GCCCGTGTCCGT
1 GCCCGTGTCCGT
52010895 GCC
1 GCC
52010898 TGTGCAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.44, G:0.33, T:0.22
Consensus pattern (12 bp):
GCCCGTGTCCGT
Found at i:52013882 original size:22 final size:20
Alignment explanation
Indices: 52013855--52013902 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
52013845 AATAAACTAA
*
52013855 AAACTAGAACCCTAAAAAAACG
1 AAACTAGAA-ACTAAAAAAA-G
*
52013877 AAACTA-AAACTAAAGAAAG
1 AAACTAGAAACTAAAAAAAG
52013896 AAACTAG
1 AAACTAG
52013903 GTTAATGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 7 0.30
20 8 0.35
21 2 0.09
22 6 0.26
ACGTcount: A:0.62, C:0.17, G:0.10, T:0.10
Consensus pattern (20 bp):
AAACTAGAAACTAAAAAAAG
Found at i:52019019 original size:24 final size:24
Alignment explanation
Indices: 52018992--52019039 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
52018982 AGGTTTTCTC
*
52018992 TGTTTGATCTCTTGCTATTTTAGG
1 TGTTTGATATCTTGCTATTTTAGG
** *
52019016 TGTTTTTTATCTTTCTATTTTAGG
1 TGTTTGATATCTTGCTATTTTAGG
52019040 CTCATTTGAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.12, C:0.10, G:0.17, T:0.60
Consensus pattern (24 bp):
TGTTTGATATCTTGCTATTTTAGG
Found at i:52019678 original size:101 final size:101
Alignment explanation
Indices: 52019503--52019705 Score: 397
Period size: 101 Copynumber: 2.0 Consensus size: 101
52019493 AACATTGAAG
*
52019503 ATAGAACGAGAATCTTAAACTTGATGCCATGGTTGATCAACCAATGCTTATTTGAGATGCTACCT
1 ATAGAACGAGAATCTTAAACTTGATGCCATGATTGATCAACCAATGCTTATTTGAGATGCTACCT
52019568 TTCATTAAGGGTCAAGAACTTGATGGGTACGAGTTT
66 TTCATTAAGGGTCAAGAACTTGATGGGTACGAGTTT
52019604 ATAGAACGAGAATCTTAAACTTGATGCCATGATTGATCAACCAATGCTTATTTGAGATGCTACCT
1 ATAGAACGAGAATCTTAAACTTGATGCCATGATTGATCAACCAATGCTTATTTGAGATGCTACCT
52019669 TTCATTAAGGGTCAAGAACTTGATGGGTACGAGTTT
66 TTCATTAAGGGTCAAGAACTTGATGGGTACGAGTTT
52019705 A
1 A
52019706 ATATTCATCC
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 101 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (101 bp):
ATAGAACGAGAATCTTAAACTTGATGCCATGATTGATCAACCAATGCTTATTTGAGATGCTACCT
TTCATTAAGGGTCAAGAACTTGATGGGTACGAGTTT
Found at i:52023457 original size:28 final size:29
Alignment explanation
Indices: 52023420--52023481 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
52023410 GGACTTATCT
52023420 TTTA-TTCTTGCTG-TTCAATTTCT-TTTC
1 TTTATTTCTTGCTGTTTC-ATTTCTATTTC
*
52023447 TTTATTTCTTGCTGTTTCATTTTTATTTC
1 TTTATTTCTTGCTGTTTCATTTCTATTTC
52023476 TTTATT
1 TTTATT
52023482 CCTACTTGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 4 0.13
28 14 0.45
29 13 0.42
ACGTcount: A:0.11, C:0.15, G:0.06, T:0.68
Consensus pattern (29 bp):
TTTATTTCTTGCTGTTTCATTTCTATTTC
Found at i:52029795 original size:25 final size:25
Alignment explanation
Indices: 52029761--52029855 Score: 109
Period size: 25 Copynumber: 3.8 Consensus size: 25
52029751 GTTGTAAACA
*
52029761 GTAAGCTCCTTCGAGCTGAATAACG
1 GTAAGCTCCTACGAGCTGAATAACG
* *
52029786 GTAAGATCCTCCGAGCTGAATAACG
1 GTAAGCTCCTACGAGCTGAATAACG
* * * *
52029811 GTAAGCTCATACGAGCTGAGTATCA
1 GTAAGCTCCTACGAGCTGAATAACG
* *
52029836 GTAAGCTCATAAGAGCTGAA
1 GTAAGCTCCTACGAGCTGAA
52029856 ATTGGTAACT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (25 bp):
GTAAGCTCCTACGAGCTGAATAACG
Found at i:52042044 original size:7 final size:6
Alignment explanation
Indices: 52041984--52042054 Score: 61
Period size: 6 Copynumber: 11.7 Consensus size: 6
52041974 AAATTTTAAA
* * ** * * *
52041984 ATTTTT ATTTTT ATTTTTT ATTCTT ATCTTT CCTTTT AATTTT AATTTA
1 ATTTTT ATTTTT A-TTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
*
52042033 ATTTTT ATTTTT ATTTTA ATTT
1 ATTTTT ATTTTT ATTTTT ATTT
52042055 GTTTATGTTT
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
6 46 0.88
7 6 0.12
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (6 bp):
ATTTTT
Found at i:52045872 original size:36 final size:37
Alignment explanation
Indices: 52045803--52045879 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 37
52045793 GGAGTGCATC
* *
52045803 AGTTAGAATAGATCTGAAAGGCTGCTGACCTGAATA-
1 AGTTAGAATAGATCTGAAAGGCTGCTAAACTGAATAG
* *
52045839 AGTTAGAATAGATCTGAAATGTTGCTAAACTGAATAG
1 AGTTAGAATAGATCTGAAAGGCTGCTAAACTGAATAG
52045876 AGTT
1 AGTT
52045880 TACTTAGCTG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 32 0.89
37 4 0.11
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (37 bp):
AGTTAGAATAGATCTGAAAGGCTGCTAAACTGAATAG
Found at i:52048275 original size:36 final size:35
Alignment explanation
Indices: 52048190--52048286 Score: 99
Period size: 36 Copynumber: 2.7 Consensus size: 35
52048180 ATACTCTGAT
* *
52048190 ATTTTGATTCGCATG-TGAAGCATGCTATTAATCTG
1 ATTTTGATTCGCATGTTG-AGCATGCCATTAATCTA
*
52048225 ATTTTGACTT-GCATGTTGAGCATGCCATTATTTCTA
1 ATTTTGA-TTCGCATGTTGAGCATGCCATTA-ATCTA
* **
52048261 ATTTTGGTTCGCATGTACAGCATGCC
1 ATTTTGATTCGCATGTTGAGCATGCC
52048287 TACTGTAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
35 25 0.48
36 27 0.52
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.40
Consensus pattern (35 bp):
ATTTTGATTCGCATGTTGAGCATGCCATTAATCTA
Found at i:52048688 original size:23 final size:23
Alignment explanation
Indices: 52048662--52048721 Score: 54
Period size: 23 Copynumber: 2.6 Consensus size: 23
52048652 ATATTTAGTA
52048662 TGTTTATGATTTGTTTAAA-CTAT
1 TGTTTAT-ATTTGTTTAAATCTAT
*
52048685 TGTTGT-TATGTG-TTAAATTCTAT
1 TGTT-TATATTTGTTTAAA-TCTAT
52048708 TGTTTATTATTTGT
1 TGTTTA-TATTTGT
52048722 AATCCACATT
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
21 5 0.17
22 5 0.17
23 13 0.45
24 6 0.21
ACGTcount: A:0.22, C:0.03, G:0.15, T:0.60
Consensus pattern (23 bp):
TGTTTATATTTGTTTAAATCTAT
Found at i:52049566 original size:26 final size:26
Alignment explanation
Indices: 52049525--52049606 Score: 101
Period size: 26 Copynumber: 3.2 Consensus size: 26
52049515 TCGATAGAAT
* * *
52049525 TTCCTCAATAGGTAGTCTTTGCGGAC
1 TTCCACAATAGATAGTCCTTGCGGAC
* *
52049551 TTTCACAATAGATAGTCCTTGTGGAC
1 TTCCACAATAGATAGTCCTTGCGGAC
* *
52049577 TTCCACAATAGATAGTCCTTTCAGAC
1 TTCCACAATAGATAGTCCTTGCGGAC
52049603 TTCC
1 TTCC
52049607 TACATATGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (26 bp):
TTCCACAATAGATAGTCCTTGCGGAC
Found at i:52061770 original size:6 final size:6
Alignment explanation
Indices: 52061759--52061799 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
52061749 CTTAGAATGT
*
52061759 TTTCTA TTTCTA TTTCTA TATTCTA TTTTCAA TTTCTA TTT
1 TTTCTA TTTCTA TTTCTA T-TTCTA -TTTCTA TTTCTA TTT
52061800 TTTAAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 21 0.68
7 9 0.29
8 1 0.03
ACGTcount: A:0.20, C:0.15, G:0.00, T:0.66
Consensus pattern (6 bp):
TTTCTA
Found at i:52061793 original size:20 final size:19
Alignment explanation
Indices: 52061760--52061797 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
52061750 TTAGAATGTT
*
52061760 TTCTATTTCTATTTCTATA
1 TTCTATTTCAATTTCTATA
52061779 TTCTATTTTCAATTTCTAT
1 TTCTA-TTTCAATTTCTAT
52061798 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.21, C:0.16, G:0.00, T:0.63
Consensus pattern (19 bp):
TTCTATTTCAATTTCTATA
Found at i:52061800 original size:13 final size:13
Alignment explanation
Indices: 52061758--52061800 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
52061748 TCTTAGAATG
52061758 TTTTCTATTTCTA
1 TTTTCTATTTCTA
52061771 -TTTCTATATTCTA
1 TTTTCTAT-TTCTA
*
52061784 TTTTCAATTTCTA
1 TTTTCTATTTCTA
52061797 TTTT
1 TTTT
52061801 TTAAAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 7 0.26
13 14 0.52
14 6 0.22
ACGTcount: A:0.19, C:0.14, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTTCTATTTCTA
Found at i:52069027 original size:4 final size:4
Alignment explanation
Indices: 52069018--52069055 Score: 58
Period size: 4 Copynumber: 9.0 Consensus size: 4
52069008 AAGTTTTATT
52069018 TTTA TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
52069056 AATTTTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 24 0.75
5 8 0.25
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:52069035 original size:12 final size:13
Alignment explanation
Indices: 52069012--52069055 Score: 63
Period size: 12 Copynumber: 3.3 Consensus size: 13
52069002 GTTGTAAAGT
52069012 TTTATTTTTATTTA
1 TTTA-TTTTATTTA
52069026 TTTA-TTTATTTA
1 TTTATTTTATTTA
52069038 TTTATTTTATTTA
1 TTTATTTTATTTA
52069051 GTTTA
1 -TTTA
52069056 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.43
13 8 0.29
14 8 0.29
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:52069063 original size:26 final size:26
Alignment explanation
Indices: 52069012--52069064 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
52069002 GTTGTAAAGT
*
52069012 TTTATTTTTATTTATTTATTTATTTA
1 TTTATTTTTATTTATTTAATTATTTA
52069038 TTTA-TTTTATTTAGTTTAAATT-TTTA
1 TTTATTTTTATTTA-TTT-AATTATTTA
52069064 T
1 T
52069065 ATTCAGTCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 9 0.38
26 12 0.50
27 3 0.12
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (26 bp):
TTTATTTTTATTTATTTAATTATTTA
Found at i:52073456 original size:58 final size:58
Alignment explanation
Indices: 52073366--52073480 Score: 212
Period size: 58 Copynumber: 2.0 Consensus size: 58
52073356 AGCTTGGCAC
*
52073366 TTGCCTAAGCATCAAGCAACACCACTGATTAGTGTACTTGTACATATTACATATAAAA
1 TTGCCTAAGCATCAAGCAACACCACTGATTAGTGTACTTGCACATATTACATATAAAA
*
52073424 TTGCCTAAGCATTAAGCAACACCACTGATTAGTGTACTTGCACATATTACATATAAA
1 TTGCCTAAGCATCAAGCAACACCACTGATTAGTGTACTTGCACATATTACATATAAA
52073481 TTCAACTTTG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (58 bp):
TTGCCTAAGCATCAAGCAACACCACTGATTAGTGTACTTGCACATATTACATATAAAA
Found at i:52073981 original size:19 final size:20
Alignment explanation
Indices: 52073939--52073981 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
52073929 TCATGCTTTC
*
52073939 TATTCACATTTTCATATTCA
1 TATTCACATTTTCAAATTCA
52073959 -ATTCACATTTTCAAATT-A
1 TATTCACATTTTCAAATTCA
52073977 TATTC
1 TATTC
52073982 CACTTAGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTCACATTTTCAAATTCA
Found at i:52093155 original size:16 final size:19
Alignment explanation
Indices: 52093116--52093155 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
52093106 TTTACCGTCA
52093116 ATACA-CAGTGATGAATGT
1 ATACATCAGTGATGAATGT
52093134 ATACATCAG-GAT-AATG-
1 ATACATCAGTGATGAATGT
52093150 ATACAT
1 ATACAT
52093156 GTATAGGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 6 0.29
17 4 0.19
18 8 0.38
19 3 0.14
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.28
Consensus pattern (19 bp):
ATACATCAGTGATGAATGT
Found at i:52093794 original size:3 final size:3
Alignment explanation
Indices: 52093786--52093818 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
52093776 AGCCCATATT
*
52093786 TTC TTC TTC TTC TTC TTC TTC TTC TTC TAC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
52093819 ATGAATTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.03, C:0.33, G:0.00, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:52098364 original size:28 final size:29
Alignment explanation
Indices: 52098333--52098396 Score: 67
Period size: 32 Copynumber: 2.1 Consensus size: 29
52098323 TCGTAAATAT
52098333 TAAA-TAATAATATTTACGAACTTGCTCG
1 TAAATTAATAATATTTACGAACTTGCTCG
** *
52098361 TAAAATTGTGTTAATATTTACTAACTTGCTCG
1 T-AAA-T-TAATAATATTTACGAACTTGCTCG
52098393 TAAA
1 TAAA
52098397 ATTGTGGTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
28 1 0.03
29 3 0.10
31 3 0.10
32 22 0.76
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (29 bp):
TAAATTAATAATATTTACGAACTTGCTCG
Found at i:52098381 original size:32 final size:32
Alignment explanation
Indices: 52098340--52098402 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
52098330 TATTAAATAA
52098340 TAATATTTACGAACTTGCTCGTAAAATTGTGT
1 TAATATTTACGAACTTGCTCGTAAAATTGTGT
*
52098372 TAATATTTACTAACTTGCTCGTAAAATTGTG
1 TAATATTTACGAACTTGCTCGTAAAATTGTG
52098403 GTCCCAAAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (32 bp):
TAATATTTACGAACTTGCTCGTAAAATTGTGT
Found at i:52099193 original size:66 final size:66
Alignment explanation
Indices: 52099080--52099203 Score: 178
Period size: 66 Copynumber: 1.9 Consensus size: 66
52099070 ATTCGCTAGG
*
52099080 TCCAAACTAACGATTGCAATTAGCCAAGCCCACTGGCAACCCCAATTCGCTAGGCCTACTAGTGA
1 TCCAAACTAACGATTGCAATTAGCCAAGCCCACTGGCAACCCCAATTCGCCAGGCCTACTAGTGA
52099145 A
66 A
* * * * *
52099146 TCCAAACTGATGATTGCAATTCA-CCAAGCCTACTGGCGACCCTAATTCGCCAGGCCTA
1 TCCAAACTAACGATTGCAATT-AGCCAAGCCCACTGGCAACCCCAATTCGCCAGGCCTA
52099204 TTGGTAAATC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
66 50 0.98
67 1 0.02
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21
Consensus pattern (66 bp):
TCCAAACTAACGATTGCAATTAGCCAAGCCCACTGGCAACCCCAATTCGCCAGGCCTACTAGTGA
A
Done.