genome.fa.s15.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  173  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52871414--52871512	49	2.0	49	96	1	182	41	16	27	15	1.88
52876398--52876513	38	3.0	38	87	5	153	33	6	12	47	1.67
52882825--52882872	24	2.0	24	88	8	71	20	10	18	50	1.76
52886738--52886795	29	2.0	29	96	0	107	43	17	6	32	1.75
52889384--52889468	25	3.5	24	86	1	107	27	22	20	30	1.98
52889404--52889502	25	4.0	24	81	7	101	29	20	23	27	1.99
52889438--52889515	25	3.2	25	81	5	70	29	20	24	25	1.99
52897836--52897990	28	5.6	28	78	7	136	35	12	25	25	1.92
52904821--52905205	29	13.2	29	75	5	303	37	12	25	24	1.90
52909030--52909063	17	1.9	18	94	5	61	41	5	14	38	1.70
52912326--52912448	29	4.2	30	80	3	142	35	15	29	19	1.93
52912326--52912448	59	2.1	59	85	0	165	35	15	29	19	1.93
52917735--52917856	40	3.1	39	85	2	145	33	18	27	20	1.96
52921142--52921196	16	3.2	18	80	19	64	25	0	27	47	1.52
52928481--52928548	34	2.0	34	100	0	136	26	5	26	41	1.78
52931802--52931890	44	2.0	44	95	0	160	34	12	19	33	1.89
52936118--52936174	24	2.4	24	96	0	105	19	33	12	35	1.89
52937714--52937844	27	4.9	27	84	1	147	21	17	21	39	1.92
52937716--52937844	53	2.4	53	90	1	195	20	17	21	39	1.92
52951833--52951978	38	3.8	39	80	11	133	45	10	8	34	1.71
52954363--52954591	112	2.0	112	93	0	386	23	24	15	36	1.94
52955137--52955196	22	2.7	21	80	15	59	3	23	6	66	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52958370--52958458	38	2.3	39	84	9	121	46	11	7	34	1.69
52960914--52960957	21	2.1	21	86	0	61	38	11	6	43	1.67
52965886--52965920	17	2.1	17	88	0	52	8	14	20	57	1.63
52966796--52966868	31	2.4	31	83	4	85	35	9	2	52	1.49
52969987--52970023	9	4.1	9	92	0	65	29	10	13	45	1.77
52973159--52973209	24	2.0	26	81	7	61	37	5	3	52	1.44
52973489--52973897	108	3.8	108	88	2	536	30	17	19	33	1.95
52985627--52985877	41	5.8	43	78	11	176	28	18	23	29	1.98
52985538--52985898	44	8.4	44	74	7	260	28	20	22	27	1.99
52985589--52985838	131	1.9	131	86	1	358	29	18	23	28	1.98
52985717--52985898	85	2.1	85	94	0	319	26	21	21	29	1.99
52987956--52988354	108	3.7	108	89	3	527	30	18	18	32	1.95
52993751--52993782	7	4.6	7	96	0	55	0	31	15	53	1.43
52993780--52993821	21	2.0	21	95	0	75	4	35	23	35	1.76
52994950--52994980	16	1.9	16	93	0	53	16	9	12	61	1.56
52996184--52996347	72	2.3	72	88	4	233	25	5	12	56	1.57
52998087--52998147	13	4.7	13	82	8	79	37	24	4	32	1.77
52998499--52998527	10	2.7	11	89	10	51	20	6	0	72	1.07
53000735--53000906	35	4.9	34	86	2	218	24	26	16	32	1.96
53001517--53001629	35	3.2	35	87	0	163	21	23	19	36	1.95
53003152--53003180	13	2.1	14	93	6	51	34	3	0	62	1.12
53003151--53003183	14	2.5	13	86	13	50	30	3	0	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53004816--53004882	28	2.3	30	80	10	77	37	5	2	53	1.41
53008790--53008836	11	4.4	11	87	12	71	48	10	0	40	1.38
53009619--53009644	13	2.0	13	100	0	52	53	15	15	15	1.73
53011204--53011381	27	6.6	27	82	3	115	29	28	15	26	1.96
53011225--53011380	82	1.9	81	88	3	233	29	28	15	26	1.96
53011204--53011380	54	3.3	54	81	6	205	29	28	15	26	1.96
53027294--53027361	34	2.0	34	85	5	93	20	26	23	29	1.99
53031547--53031580	15	2.2	16	89	5	52	41	0	5	52	1.25
53031849--53031883	17	2.0	18	88	5	54	34	5	2	57	1.37
53036120--53036164	22	2.0	22	95	0	81	46	20	13	20	1.83
53047168--53047195	13	2.2	13	100	0	56	17	0	28	53	1.44
53053764--53053816	24	2.2	25	86	3	72	45	1	28	24	1.64
53065236--53065312	33	2.3	34	86	4	102	46	18	6	28	1.73
53065729--53065783	24	2.2	24	90	3	83	38	0	40	21	1.54
53077675--53077704	14	2.1	14	93	0	51	53	6	3	36	1.44
53081625--53081691	28	2.4	28	92	2	107	19	16	17	46	1.85
53083318--53083501	40	4.7	38	79	9	160	26	21	27	25	1.99
53083370--53083534	79	2.1	78	80	9	185	28	18	26	26	1.98
53087517--53087566	14	3.3	15	80	11	57	76	8	12	4	1.15
53088628--53089042	44	9.6	44	70	10	248	28	26	18	26	1.98
53088669--53088873	88	2.3	88	93	0	338	31	24	16	27	1.96
53088434--53088872	217	2.0	218	81	3	510	29	24	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53088457--53089045	305	1.9	305	97	0	1106	28	25	18	27	1.98
53088984--53089107	62	2.0	62	96	0	230	35	20	17	25	1.95
53088767--53089324	279	2.0	279	97	0	1062	28	24	18	27	1.98
53089361--53089691	127	2.6	128	91	0	547	26	24	17	31	1.97
53090992--53091032	7	5.9	7	88	11	66	14	14	0	70	1.16
53090990--53091032	21	2.1	20	95	4	77	16	16	0	67	1.24
53091923--53091984	26	2.4	25	76	12	63	11	11	9	67	1.42
53097922--53097968	17	2.8	17	74	6	51	76	4	12	6	1.12
53105467--53105567	40	2.5	39	78	7	96	39	16	27	15	1.90
53107683--53107721	21	1.9	20	89	5	60	56	0	2	41	1.13
53113685--53113908	40	5.6	40	86	7	287	24	23	28	24	2.00
53113684--53113941	119	2.2	119	82	6	301	25	22	27	24	2.00
53116366--53116409	22	2.0	22	100	0	88	40	0	18	40	1.50
53122429--53122693	133	2.0	133	96	1	496	28	25	20	25	1.99
53125863--53125984	60	2.0	60	98	0	235	22	22	20	34	1.97
53130902--53130956	6	9.2	6	76	7	58	76	1	5	16	1.06
53130892--53130956	29	2.3	27	80	15	69	73	1	6	18	1.11
53136623--53136674	23	2.3	23	93	0	86	28	21	15	34	1.94
53139612--53140162	275	2.0	275	97	0	1030	34	17	17	31	1.92
53145072--53145146	30	2.5	30	84	0	96	24	25	10	40	1.87
53145131--53145210	30	2.7	30	76	0	97	18	28	12	40	1.87
53145101--53145301	60	3.4	59	75	6	190	22	27	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53145191--53145347	30	5.4	29	70	12	90	25	25	12	36	1.91
53145101--53145301	90	2.2	90	79	4	210	22	27	14	34	1.93
53152816--53152885	30	2.3	30	85	0	86	25	27	11	35	1.90
53162652--53162836	79	2.3	81	84	7	236	25	27	22	24	2.00
53162652--53162836	40	4.7	40	83	7	234	25	27	22	24	2.00
53164057--53164320	85	3.1	85	97	0	492	26	28	8	37	1.85
53165567--53165927	40	9.1	40	90	0	535	25	27	21	24	1.99
53168485--53168837	47	7.4	47	95	1	589	29	29	7	32	1.86
53176051--53176595	47	11.6	47	91	3	783	28	28	8	33	1.87
53176410--53176484	22	3.3	22	67	17	62	28	29	10	32	1.90
53176385--53176463	25	3.3	25	67	16	76	32	27	5	34	1.79
53179554--53179604	25	2.0	25	92	0	84	29	13	31	25	1.94
53182393--53182562	40	4.3	40	87	3	227	26	27	20	25	1.99
53193042--53193074	16	1.9	18	88	11	52	15	15	21	48	1.81
53213943--53214073	27	4.8	28	75	15	103	28	25	14	32	1.95
53213989--53214073	30	3.1	27	79	17	93	25	22	17	34	1.96
53220150--53220289	35	4.0	35	80	7	131	27	1	36	35	1.66
53220164--53220294	70	1.9	70	85	3	183	25	1	36	35	1.66
53220166--53220294	35	3.7	34	81	8	143	25	1	37	35	1.66
53221107--53221188	17	4.8	17	73	0	74	28	24	20	26	1.99
53221107--53221188	34	2.4	34	79	0	92	28	24	20	26	1.99
53230278--53230314	6	6.5	6	87	9	51	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53233207--53233311	19	5.2	21	79	12	69	38	15	7	39	1.76
53233210--53233254	22	2.0	22	86	4	63	37	17	6	37	1.76
53233233--53233324	19	4.8	19	91	0	157	36	14	9	39	1.79
53233360--53233386	14	1.9	14	100	0	54	37	37	3	22	1.72
53238305--53238344	3	13.3	3	100	0	80	35	0	0	65	0.93
53239914--53240514	306	2.0	306	83	6	779	37	11	7	43	1.69
53243690--53243881	40	4.8	40	90	2	253	25	30	21	21	1.99
53249871--53250055	40	4.6	39	82	9	191	25	22	27	25	2.00
53249871--53250055	79	2.3	81	83	10	231	25	22	27	25	2.00
53249872--53250088	79	2.7	79	80	10	196	26	21	27	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187