Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 18 of 187
Found at i:4820014 original size:18 final size:19
Alignment explanation
Indices: 4819983--4820021 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
4819973 CTTTTTTGTA
*
4819983 TATTATTTTGGTATTTTTT
1 TATTATTTTGGTATTATTT
*
4820002 TATT-TTTTTGTATTATTT
1 TATTATTTTGGTATTATTT
4820020 TA
1 TA
4820022 GTAAAATATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (19 bp):
TATTATTTTGGTATTATTT
Found at i:4820327 original size:10 final size:10
Alignment explanation
Indices: 4820298--4820407 Score: 64
Period size: 10 Copynumber: 11.2 Consensus size: 10
4820288 TTCATTCTAG
4820298 AATTATTAAA
1 AATTATTAAA
* *
4820308 AA-AATAAAA
1 AATTATTAAA
4820317 AATTATTAAA
1 AATTATTAAA
*
4820327 AATCATTAAA
1 AATTATTAAA
** *
4820337 GTTTACTAAA
1 AATTATTAAA
*
4820347 ATTTA-TAAA
1 AATTATTAAA
* *
4820356 ATTTATTAGA
1 AATTATTAAA
*
4820366 AATTATTCCAA
1 AATTATT-AAA
*
4820377 AATCA-TAAA
1 AATTATTAAA
* *
4820386 ATTTATAAAA
1 AATTATTAAA
*
4820396 AAATATTAAA
1 AATTATTAAA
4820406 AA
1 AA
4820408 CCATAAAAAT
Statistics
Matches: 74, Mismatches: 22, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
9 21 0.28
10 48 0.65
11 5 0.07
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.35
Consensus pattern (10 bp):
AATTATTAAA
Found at i:4820720 original size:19 final size:20
Alignment explanation
Indices: 4820667--4820720 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
4820657 ATTTTACAAA
*
4820667 TTTTATAAAATTTTATGATT
1 TTTTATAAAATTTAATGATT
* **
4820687 TTTAATTAATTTTTAAT-ATT
1 TTTTA-TAAAATTTAATGATT
4820707 TTTTATAAAATTTA
1 TTTTATAAAATTTA
4820721 TTTTTATTTA
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
19 7 0.27
20 11 0.42
21 8 0.31
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTTATAAAATTTAATGATT
Found at i:4820728 original size:22 final size:21
Alignment explanation
Indices: 4820667--4820759 Score: 61
Period size: 22 Copynumber: 4.4 Consensus size: 21
4820657 ATTTTACAAA
* *
4820667 TTTTATAA-AATTTTATGA-T
1 TTTTATAATAATTTTTTTATT
* *
4820686 TTTTA-ATTAATTTTTAATATT
1 TTTTATAATAATTTTT-TTATT
4820707 TTTTATAA-AATTTATTTTTATT
1 TTTTATAATAA-TT-TTTTTATT
*
4820729 TAGTTT-TAATGATTTTTTTATT
1 T--TTTATAATAATTTTTTTATT
4820751 TTTTATAAT
1 TTTTATAAT
4820760 TCCATAATGT
Statistics
Matches: 57, Mismatches: 7, Indels: 18
0.70 0.09 0.22
Matches are distributed among these distances:
18 1 0.02
19 11 0.19
20 4 0.07
21 12 0.21
22 17 0.30
23 8 0.14
24 4 0.07
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (21 bp):
TTTTATAATAATTTTTTTATT
Found at i:4821232 original size:86 final size:84
Alignment explanation
Indices: 4821083--4821275 Score: 235
Period size: 86 Copynumber: 2.2 Consensus size: 84
4821073 CTTTAAGAAA
* * *
4821083 AAAAAACAATTAAGCACCTCT-TTTTTCTTTACACTTAATTGAGCACTTGAACTTTTAAAATGCA
1 AAAAAACAATTAAGC-CC-CTAATTTT-TTT--ACTCAATTGAGCACTTGAACTTTCAAAATGCA
* *** *
4821147 TTAAAAGGGCCCTCAAACTTTTTC
61 TCAAAAACACCCTCAAAATTTTTC
*
4821171 AAAAAAAGCAATTAAGCCCCTAATTTTTTTACTCAATTGGGCACTTGAACTTTCAAAATGCATCA
1 -AAAAAA-CAATTAAGCCCCTAATTTTTTTACTCAATTGAGCACTTGAACTTTCAAAATGCATCA
4821236 AAAACACCCTCAAAATTTTTC
64 AAAACACCCTCAAAATTTTTC
4821257 AAAAAACAATTAAGCCCCT
1 AAAAAACAATTAAGCCCCT
4821276 GTTCTTATTA
Statistics
Matches: 93, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
84 13 0.14
85 6 0.06
86 48 0.52
88 5 0.05
89 12 0.13
90 9 0.10
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (84 bp):
AAAAAACAATTAAGCCCCTAATTTTTTTACTCAATTGAGCACTTGAACTTTCAAAATGCATCAAA
AACACCCTCAAAATTTTTC
Found at i:4825085 original size:10 final size:10
Alignment explanation
Indices: 4825070--4825097 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
4825060 TTTTTTTTTA
4825070 AATTAGTATT
1 AATTAGTATT
4825080 AATTAGTATT
1 AATTAGTATT
4825090 AATTAGTA
1 AATTAGTA
4825098 GGGTAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (10 bp):
AATTAGTATT
Found at i:4827122 original size:29 final size:27
Alignment explanation
Indices: 4827083--4827137 Score: 83
Period size: 29 Copynumber: 2.0 Consensus size: 27
4827073 AATTTTTAAA
4827083 AATTCTCATTAAACATTTTCAAAATTTTC
1 AATTCTCATTAAAC-TTTT-AAAATTTTC
*
4827112 AATTTTCATTAAACTTTTAAAATTTT
1 AATTCTCATTAAACTTTTAAAATTTT
4827138 TGAAAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 8 0.32
28 4 0.16
29 13 0.52
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (27 bp):
AATTCTCATTAAACTTTTAAAATTTTC
Found at i:4827458 original size:13 final size:12
Alignment explanation
Indices: 4827440--4827489 Score: 55
Period size: 13 Copynumber: 3.9 Consensus size: 12
4827430 TCTTCATTGC
4827440 TTTTGAAAAGTGA
1 TTTTGAAAAGT-A
4827453 TTTTGAAAAGTA
1 TTTTGAAAAGTA
* *
4827465 TTGTAGAAAAATA
1 TT-TTGAAAAGTA
4827478 CTTTTGAAAAGT
1 -TTTTGAAAAGT
4827490 TTGGTTTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
12 3 0.10
13 26 0.84
14 2 0.06
ACGTcount: A:0.42, C:0.02, G:0.18, T:0.38
Consensus pattern (12 bp):
TTTTGAAAAGTA
Found at i:4832915 original size:3 final size:3
Alignment explanation
Indices: 4832907--4832931 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
4832897 TCAATTGGCA
4832907 TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG T
4832932 AAGAACTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:4835634 original size:34 final size:34
Alignment explanation
Indices: 4835583--4835652 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
4835573 CAGCTTGATG
*
4835583 TGTTTAGGTAGTCGAATGACTTGTTTAGTTAGCT
1 TGTTTAGATAGTCGAATGACTTGTTTAGTTAGCT
*
4835617 TGTTTAGATAGTTGAATGACTTGTTTAGTTAGCT
1 TGTTTAGATAGTCGAATGACTTGTTTAGTTAGCT
4835651 TG
1 TG
4835653 CTGACAACTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.21, C:0.07, G:0.26, T:0.46
Consensus pattern (34 bp):
TGTTTAGATAGTCGAATGACTTGTTTAGTTAGCT
Found at i:4839036 original size:22 final size:22
Alignment explanation
Indices: 4839008--4839055 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
4838998 ATCGGATCCA
*
4839008 ACTCCACCTCCACCGA-TTCACG
1 ACTCCACCTCCA-CGACTCCACG
*
4839030 ACTCCACGTCCACGACTCCACG
1 ACTCCACCTCCACGACTCCACG
4839052 ACTC
1 ACTC
4839056 TACGGTGCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.23, C:0.50, G:0.10, T:0.17
Consensus pattern (22 bp):
ACTCCACCTCCACGACTCCACG
Found at i:4840226 original size:15 final size:15
Alignment explanation
Indices: 4840206--4840239 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
4840196 AAATATACAT
*
4840206 TTAATTTGTAACACA
1 TTAATTTCTAACACA
4840221 TTAATTTCTAACACA
1 TTAATTTCTAACACA
4840236 TTAA
1 TTAA
4840240 AAAAAAACAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.41, C:0.15, G:0.03, T:0.41
Consensus pattern (15 bp):
TTAATTTCTAACACA
Found at i:4842843 original size:26 final size:26
Alignment explanation
Indices: 4842814--4842870 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
4842804 AACAGGTATC
*
4842814 AGGATAATGATGATGATGGAAAACAT
1 AGGACAATGATGATGATGGAAAACAT
4842840 AGGACAATGATGATGATGGAAAACAT
1 AGGACAATGATGATGATGGAAAACAT
4842866 AGGAC
1 AGGAC
4842871 TACTTATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.46, C:0.07, G:0.28, T:0.19
Consensus pattern (26 bp):
AGGACAATGATGATGATGGAAAACAT
Found at i:4843204 original size:5 final size:5
Alignment explanation
Indices: 4843194--4843221 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
4843184 AGAATGAAAG
4843194 AAAAC AAAAC AAAAC AAAAC AAAAC AAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAA
4843222 CATAATGGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:4844555 original size:4 final size:4
Alignment explanation
Indices: 4844541--4844583 Score: 77
Period size: 4 Copynumber: 10.8 Consensus size: 4
4844531 AAAAAATGGG
*
4844541 GAAA AAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAA
4844584 GGAAGGAATG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:4846222 original size:52 final size:52
Alignment explanation
Indices: 4846162--4846260 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 52
4846152 ACAAATCCTA
* *
4846162 TCTCAA-TTTCATTCCAAAACCCTCTCAATTTCCTTCCAAAATTCTCTTAAAC
1 TCTCAATTTTC-TTCCAAAACCCTCTCAATTTCATTCCAAAAATCTCTTAAAC
*
4846214 TCTCAATTTTCTTCCAAAATCCTCTCAATTTCATTCCAAAAATCTCT
1 TCTCAATTTTCTTCCAAAACCCTCTCAATTTCATTCCAAAAATCTCT
4846261 CAAATCCATA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
52 39 0.91
53 4 0.09
ACGTcount: A:0.30, C:0.31, G:0.00, T:0.38
Consensus pattern (52 bp):
TCTCAATTTTCTTCCAAAACCCTCTCAATTTCATTCCAAAAATCTCTTAAAC
Found at i:4846238 original size:22 final size:22
Alignment explanation
Indices: 4846213--4846263 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
4846203 TTCTCTTAAA
4846213 CTCTCAATTTTC-TTCC-AAAAT
1 CTCTCAA-TTTCATTCCAAAAAT
4846234 CCTCTCAATTTCATTCCAAAAAT
1 -CTCTCAATTTCATTCCAAAAAT
4846257 CTCTCAA
1 CTCTCAA
4846264 ATCCATATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.15
22 18 0.67
23 5 0.19
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.37
Consensus pattern (22 bp):
CTCTCAATTTCATTCCAAAAAT
Found at i:4846335 original size:31 final size:33
Alignment explanation
Indices: 4846297--4846365 Score: 115
Period size: 31 Copynumber: 2.2 Consensus size: 33
4846287 CCTCAATTTC
*
4846297 ATTTTTTTAAAATAA-TTTCAAA-TTTTTTTAT
1 ATTTTTTTAAAATAATTTTAAAATTTTTTTTAT
4846328 ATTTTTTTAAAATAATTTTAAAATTTTTTTTAT
1 ATTTTTTTAAAATAATTTTAAAATTTTTTTTAT
4846361 ATTTT
1 ATTTT
4846366 CATCAATGGC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
31 15 0.43
32 6 0.17
33 14 0.40
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (33 bp):
ATTTTTTTAAAATAATTTTAAAATTTTTTTTAT
Found at i:4846365 original size:11 final size:11
Alignment explanation
Indices: 4846297--4846357 Score: 54
Period size: 11 Copynumber: 5.7 Consensus size: 11
4846287 CCTCAATTTC
4846297 ATTTTTTTAAA
1 ATTTTTTTAAA
** *
4846308 A-TAATTTCAA
1 ATTTTTTTAAA
*
4846318 ATTTTTTT-AT
1 ATTTTTTTAAA
4846328 ATTTTTTTAAA
1 ATTTTTTTAAA
**
4846339 ATAATTTTAAA
1 ATTTTTTTAAA
4846350 ATTTTTTT
1 ATTTTTTT
4846358 TATATTTTCA
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
10 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (11 bp):
ATTTTTTTAAA
Found at i:4847266 original size:21 final size:19
Alignment explanation
Indices: 4847238--4847276 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
4847228 TAACGAGGAA
4847238 AATTTTATATTACATTTTGG
1 AATTTTATA-TACATTTTGG
*
4847258 AATTGTTATATAGATTTTG
1 AATT-TTATATACATTTTG
4847277 TAAGAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.31, C:0.03, G:0.13, T:0.54
Consensus pattern (19 bp):
AATTTTATATACATTTTGG
Found at i:4848927 original size:109 final size:108
Alignment explanation
Indices: 4848691--4849716 Score: 861
Period size: 109 Copynumber: 9.0 Consensus size: 108
4848681 TTTCATACCC
*
4848691 TAACCCTAACCTAATTTAATTTAAAACCCTAAACCTAACCTAATTTAATTAAAAACCCTAACCCT
1 TAACCCTAACCTAATTTAA-TTAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
*
4848756 AACCTAATTTATTTAAAAACCCTAACCCTACCCTAATTTAATTAAAAACCA
65 AACCTAATTTAATTAAAAACCCT-A----A-CCTAATTTAATT-AAAACCA
* * *
4848807 TAACCCTAACCTAATTTAATTAAAACCTTAACCTTAACCTAATTTAATTAAAAACCCTAACCGTA
1 TAACCCTAACCTAATTTAATTAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTA
* *
4848872 CCCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAACCT
66 ACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAACCA
*
4848915 TAACCCTAAACCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATT-AAAACCCTAACCC
1 TAACCCT-AACCTAATTTAATT-AAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCC
*
4848979 TAAACCTAATTTAATTAAAAACCCTAACCTTAACATAATTTAATTAAAAACCC
64 T-AACCTAATTTAATTAAAAACCCTAA-C----C-TAATTTAATT-AAAACCA
* * *
4849032 TAACCCTAATCTAATTTAATTAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCATA
1 TAACCCTAACCTAATTTAATTAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTA
* *
4849097 CCCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCC
66 ACCTAATTTAATT--AAA----AACCCTAACCTAATTTAATT-AAAACCA
* *
4849147 TAACCTTAACCTAATTTAACCCTAACCCTAACCCTAACCCTAACCCTAACCTAATTTAATT-AAA
1 TAACCCTAACCTAATTTAA--TTAA----AACCCT------AACCCTAACCTAATTTAATTAAAA
* * ** * ****
4849211 ACCCGAACCTTAACCTAATTTAATTAAAAACCCTAACCTAAAACCTAATTTATTTAA
54 ACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCT--AATTTAATTAAAACCA
* ** * *
4849268 AAACCCTAACCTTAACATAATT-TAACCCTAACCCTAACCTAATTTAATT-AAAACCCTAACCTT
1 TAACCCTAACC-TAATTTAATTAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
** ******
4849331 AACCTAATTTAATTAAAAACCCTAACCTAAAACGTAATTTGTTTAA
65 AACCTAATTTAATTAAAAACCCTAACCT--AATTTAATTAAAACCA
* * ** * *
4849377 AAAGCCTAACCTTAACATAATT-TAACCCTAACCCTAACCTAATTTAATT-AAAACCCTAACCTT
1 TAACCCTAACC-TAATTTAATTAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
* *
4849440 AACCTAATTTAATTAAAAACCCTAACCTAAACTTAATTTATTTAAAAACCC
65 AACCTAATTTAATTAAAAACCCTAA-C----C-TAATTTAATT-AAAACCA
*
4849491 TAACCCTAACCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCT
1 TAACCCTAACCTAATTTAATT-AAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
* * *
4849556 ACCCTAATTTAACCCTAACCCTAACCCTAACCCTAACCCTAACCTAATTTAATTAAAACCT
65 AACCTAATTTAA---T-----TAA---AAACCC------TAACCTAATTTAATTAAAACCA
* *
4849617 TAACCTTAACCTAATTTAATTAAAAACCCTAACCCTACCCTAATTTAATT--AAA----AACCCT
1 TAACCCTAACCTAATTTAATT-AAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
* *
4849676 AACCTAATTTATTTAAAAACCCTAACCTAATTTATTTAAAA
65 AACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAA
4849717 ATCCTAACCT
Statistics
Matches: 780, Mismatches: 71, Indels: 131
0.79 0.07 0.13
Matches are distributed among these distances:
103 18 0.02
108 13 0.02
109 207 0.27
110 52 0.07
111 1 0.00
112 3 0.00
113 14 0.02
114 11 0.01
115 170 0.22
116 79 0.10
117 20 0.03
119 1 0.00
120 29 0.04
121 24 0.03
122 13 0.02
124 9 0.01
126 78 0.10
127 33 0.04
128 1 0.00
132 1 0.00
133 3 0.00
ACGTcount: A:0.43, C:0.27, G:0.00, T:0.30
Consensus pattern (108 bp):
TAACCCTAACCTAATTTAATTAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTA
ACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAACCA
Found at i:4849156 original size:6 final size:6
Alignment explanation
Indices: 4849142--4849197 Score: 71
Period size: 6 Copynumber: 9.7 Consensus size: 6
4849132 TTTAATTAAA
* **
4849142 AACCCT AACCTT AA-CCT AA-TTT AACCCT AACCCT AACCCT AACCCT
1 AACCCT AACCCT AACCCT AACCCT AACCCT AACCCT AACCCT AACCCT
4849188 AACCCT AACC
1 AACCCT AACC
4849198 TAATTTAATT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
5 7 0.16
6 36 0.84
ACGTcount: A:0.36, C:0.43, G:0.00, T:0.21
Consensus pattern (6 bp):
AACCCT
Found at i:4849214 original size:40 final size:40
Alignment explanation
Indices: 4849142--4849225 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 40
4849132 TTTAATTAAA
* ** *
4849142 AACCCTAACCTTAACCTAATTTAACCCTAACCCTAACCCT
1 AACCCTAACCCTAACCTAATTTAACCAAAACCCGAACCCT
** *
4849182 AACCCTAACCCTAACCTAATTTAATTAAAACCCGAACCTT
1 AACCCTAACCCTAACCTAATTTAACCAAAACCCGAACCCT
4849222 AACC
1 AACC
4849226 TAATTTAATT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.38, C:0.37, G:0.01, T:0.24
Consensus pattern (40 bp):
AACCCTAACCCTAACCTAATTTAACCAAAACCCGAACCCT
Found at i:4849409 original size:22 final size:22
Alignment explanation
Indices: 4849381--4849423 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
4849371 GTTTAAAAAG
*
4849381 CCTAACCTTAACATAATTTAAC
1 CCTAACCCTAACATAATTTAAC
*
4849403 CCTAACCCTAACCTAATTTAA
1 CCTAACCCTAACATAATTTAA
4849424 TTAAAACCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.30, G:0.00, T:0.30
Consensus pattern (22 bp):
CCTAACCCTAACATAATTTAAC
Found at i:4849555 original size:6 final size:6
Alignment explanation
Indices: 4849544--4849599 Score: 80
Period size: 6 Copynumber: 9.7 Consensus size: 6
4849534 TTTAATTAAA
**
4849544 AACCCT AACCCT -ACCCT AA-TTT AACCCT AACCCT AACCCT AACCCT
1 AACCCT AACCCT AACCCT AACCCT AACCCT AACCCT AACCCT AACCCT
4849590 AACCCT AACC
1 AACCCT AACC
4849600 TAATTTAATT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
5 8 0.18
6 36 0.82
ACGTcount: A:0.34, C:0.46, G:0.00, T:0.20
Consensus pattern (6 bp):
AACCCT
Found at i:4849621 original size:40 final size:40
Alignment explanation
Indices: 4849544--4849627 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 40
4849534 TTTAATTAAA
* **
4849544 AACCCTAACCCTACCCTAATTTAACCCTAACCCTAACCCT
1 AACCCTAACCCTAACCTAATTTAACCAAAACCCTAACCCT
** * *
4849584 AACCCTAACCCTAACCTAATTTAATTAAAACCTTAACCTT
1 AACCCTAACCCTAACCTAATTTAACCAAAACCCTAACCCT
4849624 AACC
1 AACC
4849628 TAATTTAATT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.37, C:0.38, G:0.00, T:0.25
Consensus pattern (40 bp):
AACCCTAACCCTAACCTAATTTAACCAAAACCCTAACCCT
Found at i:4849680 original size:58 final size:58
Alignment explanation
Indices: 4848687--4849680 Score: 1141
Period size: 58 Copynumber: 17.2 Consensus size: 58
4848677 TTTATTTCAT
* * *
4848687 ACCCTAACCCTAACCTAATTTAATTTAAAACCCTAAACCTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
* * *
4848745 ACCCTAACCCTAACCTAATTTATTTAAAAACCCTAACCCTACCCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
* * * *
4848803 ACCATAACCCTAACCTAATTTAATT-AAAACCTTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
* *
4848860 ACCCTAACCGTACCCTAATTTAATT--AAA----AACCCTAACCTAATTTAATT-AAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
* * *
4848911 ACCTTAACCCTAAACCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATT-AAA
1 ACCCTAA-CCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
* * *
4848969 ACCCTAACCCTAAACCTAATTTAATTAAAAACCCTAACCTTAACATAATTTAATTAAAA
1 ACCCTAA-CCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
* * *
4849028 ACCCTAACCCTAATCTAATTTAATT-AAAACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
* *
4849085 ACCCTAACCATACCCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
*
4849143 ACCCTAACCTTAACCTAATTTAACCCTAACCCTAACCCTAACCCTAACCCTAACCTAATTTAATT
1 ACCCTAACCTTAACCTAATTTAA---T-----TAA---AAACCCTAACCCTAACCTAATTTAATT
4849208 -AAA
55 AAAA
* *
4849211 ACCCGAACCTTAACCTAATTTAATTAAAAACCCTAA-CCTAAAACCTAATTTATTTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCT--AACCTAATTTAATTAAAA
*
4849270 ACCCTAACCTTAA-C--A--TAATT--TAACCCTAACCCTAACCTAATTTAATT-AAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
* **
4849320 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAA-CCTAAAACGTAATTTGTTTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCT--AACCTAATTTAATTAAAA
* *
4849379 AGCCTAACCTTAA-C--A--TAATT--TAACCCTAACCCTAACCTAATTTAATT-AAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
* *
4849429 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAA-CCTAAACTTAATTTATTTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCT-AACCTAATTTAATTAAAA
* *
4849487 ACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
* * *
4849545 ACCCTAACCCTACCCTAATTTAACCCTAACCCTAACCCTAACCCTAACCCTAACCTAATTTAATT
1 ACCCTAACCTTAACCTAATTTAA---T-----TAA---AAACCCTAACCCTAACCTAATTTAATT
4849610 -AAA
55 AAAA
* *
4849613 ACCTTAACCTTAACCTAATTTAATTAAAAACCCTAACCCTACCCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
4849671 ACCCTAACCT
1 ACCCTAACCT
4849681 AATTTATTTA
Statistics
Matches: 814, Mismatches: 65, Indels: 114
0.82 0.07 0.11
Matches are distributed among these distances:
50 31 0.04
51 35 0.04
52 49 0.06
53 8 0.01
54 13 0.02
55 10 0.01
56 14 0.02
57 165 0.20
58 332 0.41
59 42 0.05
60 6 0.01
61 2 0.00
65 2 0.00
66 6 0.01
68 48 0.06
69 51 0.06
ACGTcount: A:0.43, C:0.27, G:0.01, T:0.29
Consensus pattern (58 bp):
ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
Found at i:4849705 original size:28 final size:28
Alignment explanation
Indices: 4848687--4849705 Score: 1022
Period size: 29 Copynumber: 35.4 Consensus size: 28
4848677 TTTATTTCAT
*
4848687 ACCCTAACCCTAACCTAATTTAATTTAAA
1 ACCCTAA-CCTAACCTAATTTAATTAAAA
4848716 ACCCTAAACCTAACCTAATTTAATTAAAA
1 ACCCT-AACCTAACCTAATTTAATTAAAA
*
4848745 ACCCTAACCCTAACCTAATTTATTTAAAA
1 ACCCTAA-CCTAACCTAATTTAATTAAAA
*
4848774 ACCCTAACCCTACCCTAATTTAATTAAAA
1 ACCCTAA-CCTAACCTAATTTAATTAAAA
*
4848803 ACCATAACCCTAACCTAATTTAATT-AAA
1 ACCCTAA-CCTAACCTAATTTAATTAAAA
*
4848831 ACCTTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACC-TAACCTAATTTAATTAAAA
*
4848860 ACCCTAACCGTACCCTAATTTAATTAAAA
1 ACCCTAACC-TAACCTAATTTAATTAAAA
4848889 A--C---CCTAACCTAATTTAATT-AAA
1 ACCCTAACCTAACCTAATTTAATTAAAA
* *
4848911 ACCTTAACCCTAAACCTAACTTAATTAAAA
1 ACCCTAA-CCT-AACCTAATTTAATTAAAA
4848941 ACCCTAACCCTAACCTAATTTAATT-AAA
1 ACCCTAA-CCTAACCTAATTTAATTAAAA
4848969 ACCCTAACCCTAAACCTAATTTAATTAAAA
1 ACCCTAA-CCT-AACCTAATTTAATTAAAA
*
4848999 ACCCTAACCTTAACATAATTTAATTAAAA
1 ACCCTAACC-TAACCTAATTTAATTAAAA
*
4849028 ACCCTAACCCTAATCTAATTTAATT-AAA
1 ACCCTAA-CCTAACCTAATTTAATTAAAA
4849056 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACC-TAACCTAATTTAATTAAAA
*
4849085 ACCCTAACCATACCCTAATTTAATTAAAA
1 ACCCTAACC-TAACCTAATTTAATTAAAA
4849114 ACCCTAACCCTAACCTAATTTAATTAAAA
1 ACCCTAA-CCTAACCTAATTTAATTAAAA
* *
4849143 ACCCTAACCTTAACCTAATTTAACCCTAACCCTA
1 ACCCTAACC-TAACCTAATTTAA--TTAA---AA
4849177 ACCCTAACCCTAACCCTAACCTAATTTAATT-AAA
1 ACCCTAA-CCTAA-CC-----TAATTTAATTAAAA
*
4849211 ACCCGAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACC-TAACCTAATTTAATTAAAA
*
4849240 ACCCTAACCTAAAACCTAATTTATTTAAAA
1 ACCCTAACCT--AACCTAATTTAATTAAAA
*
4849270 ACCCTAACCTTAA-C--A--TAATT--TA
1 ACCCTAACC-TAACCTAATTTAATTAAAA
4849292 ACCCTAACCCTAACCTAATTTAATT-AAA
1 ACCCTAA-CCTAACCTAATTTAATTAAAA
4849320 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACC-TAACCTAATTTAATTAAAA
* **
4849349 ACCCTAACCTAAAACGTAATTTGTTTAAAA
1 ACCCTAACCT--AACCTAATTTAATTAAAA
* *
4849379 AGCCTAACCTTAA-C--A--TAATT--TA
1 ACCCTAACC-TAACCTAATTTAATTAAAA
4849401 ACCCTAACCCTAACCTAATTTAATT-AAA
1 ACCCTAA-CCTAACCTAATTTAATTAAAA
4849429 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACC-TAACCTAATTTAATTAAAA
* *
4849458 ACCCTAACCTAAACTTAATTTATTTAAAA
1 ACCCTAACCT-AACCTAATTTAATTAAAA
4849487 ACCCTAACCCTAACCTAATTTAATTAAAA
1 ACCCTAA-CCTAACCTAATTTAATTAAAA
4849516 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACC-TAACCTAATTTAATTAAAA
* * *
4849545 ACCCTAACCCTACCCTAATTTAACCCTAACCCTA
1 ACCCTAA-CCTAACCTAATTTAA--TTAA---AA
4849579 ACCCTAACCCTAACCCTAACCTAATTTAATT-AAA
1 ACCCTAA-CCTAA-CC-----TAATTTAATTAAAA
*
4849613 ACCTTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACC-TAACCTAATTTAATTAAAA
*
4849642 ACCCTAACCCTACCCTAATTTAATTAAAA
1 ACCCTAA-CCTAACCTAATTTAATTAAAA
*
4849671 A--C---CCTAACCTAATTTATTTAAAA
1 ACCCTAACCTAACCTAATTTAATTAAAA
4849694 ACCCTAACCTAA
1 ACCCTAACCTAA
4849706 TTTATTTAAA
Statistics
Matches: 852, Mismatches: 57, Indels: 163
0.79 0.05 0.15
Matches are distributed among these distances:
22 25 0.03
23 40 0.05
24 9 0.01
25 3 0.00
26 2 0.00
27 20 0.02
28 146 0.17
29 435 0.51
30 86 0.10
31 8 0.01
33 8 0.01
34 44 0.05
35 6 0.01
37 2 0.00
38 2 0.00
40 16 0.02
ACGTcount: A:0.43, C:0.27, G:0.00, T:0.29
Consensus pattern (28 bp):
ACCCTAACCTAACCTAATTTAATTAAAA
Found at i:4849727 original size:28 final size:27
Alignment explanation
Indices: 4849587--4849728 Score: 140
Period size: 23 Copynumber: 5.4 Consensus size: 27
4849577 TAACCCTAAC
4849587 CCTAACCCTAACCTAATTTAATT-AAAA
1 CCTAA-CCTAACCTAATTTAATTAAAAA
4849614 CCTTAACCTTAACCTAATTTAATTAAAAA
1 CC-TAACC-TAACCTAATTTAATTAAAAA
*
4849643 CCCTAACCCTACCCTAATTTAATTAAAAA
1 -CCTAA-CCTAACCTAATTTAATTAAAAA
*
4849672 -C---CCTAACCTAATTTATTTAAAAA
1 CCTAACCTAACCTAATTTAATTAAAAA
*
4849695 -C---CCTAACCTAATTTATTTAAAAA
1 CCTAACCTAACCTAATTTAATTAAAAA
4849718 TCCTAACCTAA
1 -CCTAACCTAA
4849729 TTTTACCTAA
Statistics
Matches: 102, Mismatches: 3, Indels: 19
0.82 0.02 0.15
Matches are distributed among these distances:
23 43 0.42
25 1 0.01
27 5 0.05
28 23 0.23
29 26 0.25
30 4 0.04
ACGTcount: A:0.43, C:0.25, G:0.00, T:0.32
Consensus pattern (27 bp):
CCTAACCTAACCTAATTTAATTAAAAA
Found at i:4849786 original size:56 final size:56
Alignment explanation
Indices: 4849726--4849849 Score: 178
Period size: 56 Copynumber: 2.2 Consensus size: 56
4849716 AATCCTAACC
* * ** *
4849726 TAATTTTACCTAATTTGAT-AATCTTACTAACCATTAACACACTTTTTTGAGCTTAA
1 TAATTTTACATAATTTGATAAAT-TTACTAACCATTAACAAAAGTTATTGAGCTTAA
*
4849782 TAATTTTACATAATTTGATAAATTTACTAACCATTAACAAAAGTTATTGGGCTTAA
1 TAATTTTACATAATTTGATAAATTTACTAACCATTAACAAAAGTTATTGAGCTTAA
4849838 TAATTTTACATA
1 TAATTTTACATA
4849850 GCTTTACATA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
56 58 0.95
57 3 0.05
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.42
Consensus pattern (56 bp):
TAATTTTACATAATTTGATAAATTTACTAACCATTAACAAAAGTTATTGAGCTTAA
Found at i:4851102 original size:109 final size:109
Alignment explanation
Indices: 4850907--4851114 Score: 362
Period size: 109 Copynumber: 1.9 Consensus size: 109
4850897 CACCTTGGTG
* * *
4850907 CGGTCTGTCAAACTCCGTCATGCGAAACCATAAATTATCTCGATCGTGCAACACTGTGTGCATGA
1 CGGTCTGTCAAACTCCGTCACGCGAAACCATAAATTATCCCAATCGTGCAACACTGTGTGCATGA
*
4850972 TGTTTGCCCTCGCCTTGGCCTTGTTAATTTCTTGAACTACTGTA
66 TGTTTGCCCTCGCCTTCGCCTTGTTAATTTCTTGAACTACTGTA
* *
4851016 CGGTCTGTCAAACTTCGTCACGCGAAACCATAAATTGTCCCAATCGTGCAACACTGTGTGCATGA
1 CGGTCTGTCAAACTCCGTCACGCGAAACCATAAATTATCCCAATCGTGCAACACTGTGTGCATGA
4851081 TGTTTGCCCTCGCCTTCGCCTTGTTAATTTCTTG
66 TGTTTGCCCTCGCCTTCGCCTTGTTAATTTCTTG
4851115 TTCTCTCTCG
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
109 93 1.00
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (109 bp):
CGGTCTGTCAAACTCCGTCACGCGAAACCATAAATTATCCCAATCGTGCAACACTGTGTGCATGA
TGTTTGCCCTCGCCTTCGCCTTGTTAATTTCTTGAACTACTGTA
Found at i:4858141 original size:24 final size:24
Alignment explanation
Indices: 4858057--4858143 Score: 70
Period size: 25 Copynumber: 3.5 Consensus size: 24
4858047 TTCGGGAATA
*
4858057 CTCATACGAG-CACTTAAACGGGAAG
1 CTCATACGAGCCA-TT-AACGGAAAG
* **
4858082 CTTATGTGAGCCATGTAACGGAAAG
1 CTCATACGAGCCAT-TAACGGAAAG
**
4858107 CTCCGGA-GAGCCATTAACGGAAAG
1 CT-CATACGAGCCATTAACGGAAAG
4858131 CTCATACGAGCCA
1 CTCATACGAGCCA
4858144 ATATCGGGAA
Statistics
Matches: 48, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
23 2 0.04
24 18 0.38
25 25 0.52
26 3 0.06
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.17
Consensus pattern (24 bp):
CTCATACGAGCCATTAACGGAAAG
Found at i:4858208 original size:26 final size:26
Alignment explanation
Indices: 4858163--4858245 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 26
4858153 AGGTTCAAGT
* *
4858163 GAGCCAA-T-ATCAGGAAGCTCTGGA
1 GAGCCAATTAATCGGGAAGCTCTGAA
4858187 GAGCCAATTAATCGGGAAGCTCATGAAA
1 GAGCCAATTAATCGGGAAGCTC-TG-AA
** *
4858215 GAG-CTTTTAATCGAGAAGCTCTGAA
1 GAGCCAATTAATCGGGAAGCTCTGAA
4858240 GAGCCA
1 GAGCCA
4858246 TATATCGGGA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
24 7 0.15
25 6 0.12
26 14 0.29
27 17 0.35
28 4 0.08
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (26 bp):
GAGCCAATTAATCGGGAAGCTCTGAA
Found at i:4868147 original size:35 final size:34
Alignment explanation
Indices: 4868085--4868154 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 34
4868075 ATTTTATTTG
*
4868085 TTTAATTATATAATTAATGATATTTAAA-TATAA
1 TTTAATTATATAATTAATGATAATTAAATTATAA
*
4868118 TTTACATTATATGAATTTATGATAATTAAATTATAA
1 TTTA-ATTATAT-AATTAATGATAATTAAATTATAA
4868154 T
1 T
4868155 GATATTATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
33 4 0.12
34 7 0.22
35 15 0.47
36 6 0.19
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (34 bp):
TTTAATTATATAATTAATGATAATTAAATTATAA
Found at i:4868156 original size:25 final size:23
Alignment explanation
Indices: 4868112--4868172 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 23
4868102 TGATATTTAA
*
4868112 ATATAATTTACATTATATGA-ATTT
1 ATATAA-TTAAATTATATGATA-TT
4868136 ATGATAATTAAATTATAATGATATT
1 AT-ATAATTAAATTAT-ATGATATT
*
4868161 ATATTATTAAAT
1 ATATAATTAAAT
4868173 AAATCAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 19 0.59
25 12 0.38
26 1 0.03
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.48
Consensus pattern (23 bp):
ATATAATTAAATTATATGATATT
Found at i:4868162 original size:35 final size:34
Alignment explanation
Indices: 4868089--4868170 Score: 94
Period size: 35 Copynumber: 2.4 Consensus size: 34
4868079 TATTTGTTTA
* *
4868089 ATTATATAATTAATGATATTTAAATATAATTTAC
1 ATTATATAATTAATGATAATTAAATATAATTGAC
* *
4868123 ATTATATGAATTTATGATAATTAAATTATAA-TGAT
1 ATTATAT-AATTAATGATAATTAAA-TATAATTGAC
*
4868158 ATTATATTATTAA
1 ATTATATAATTAA
4868171 ATAAATCAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
34 11 0.28
35 24 0.60
36 5 0.12
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.48
Consensus pattern (34 bp):
ATTATATAATTAATGATAATTAAATATAATTGAC
Found at i:4869487 original size:3 final size:3
Alignment explanation
Indices: 4869473--4869528 Score: 67
Period size: 3 Copynumber: 18.7 Consensus size: 3
4869463 GTGAGGTAAG
* * * * *
4869473 TAT TAA TAT TAT TAT TAG TAA TAG TAT TAA TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4869521 TAT TAT TA
1 TAT TAT TA
4869529 AGATGAGTGG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:4869716 original size:24 final size:27
Alignment explanation
Indices: 4869679--4869742 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
4869669 AATTGCGGAT
*
4869679 TAATTATTG-ATTGAAAG-GTG-GAAA
1 TAATGATTGAATTGAAAGTGTGAGAAA
4869703 -AATGATTGAATTGAAAGTGTGAGAAA
1 TAATGATTGAATTGAAAGTGTGAGAAA
**
4869729 TTGTGATTGAATTG
1 TAATGATTGAATTG
4869743 GGATTATATG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
23 7 0.21
24 8 0.24
25 3 0.09
26 4 0.12
27 11 0.33
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.34
Consensus pattern (27 bp):
TAATGATTGAATTGAAAGTGTGAGAAA
Found at i:4889095 original size:14 final size:14
Alignment explanation
Indices: 4889074--4889107 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
4889064 CGGTATGGGT
4889074 TTAT-GGGTTTTGG
1 TTATAGGGTTTTGG
4889087 TTATAGGGTTTTGG
1 TTATAGGGTTTTGG
4889101 TTATAGG
1 TTATAGG
4889108 CAAATGATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (14 bp):
TTATAGGGTTTTGG
Found at i:4901312 original size:35 final size:34
Alignment explanation
Indices: 4901231--4901312 Score: 85
Period size: 35 Copynumber: 2.4 Consensus size: 34
4901221 TAATAAACAC
4901231 AAAA-AAATATTTTAAAAATAAAAAATAAAAATA
1 AAAATAAATATTTTAAAAATAAAAAATAAAAATA
**** *
4901264 TTTTTAAAGTATTTTAAAATTAAAAAATAAAAATAA
1 AAAATAAA-TATTTTAAAAATAAAAAATAAAAAT-A
*
4901300 AAAATATATATTT
1 AAAATAAATATTT
4901313 ATTATATTCG
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
34 3 0.08
35 29 0.81
36 4 0.11
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (34 bp):
AAAATAAATATTTTAAAAATAAAAAATAAAAATA
Found at i:4904810 original size:9 final size:9
Alignment explanation
Indices: 4904796--4904835 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
4904786 TTTGGTTAAA
4904796 AATTAACCG
1 AATTAACCG
*
4904805 AATTAACCA
1 AATTAACCG
*
4904814 AATTACCCG
1 AATTAACCG
4904823 AATTAACCG
1 AATTAACCG
4904832 AATT
1 AATT
4904836 GAATCACTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.45, C:0.23, G:0.07, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:4904872 original size:8 final size:7
Alignment explanation
Indices: 4904859--4904916 Score: 63
Period size: 6 Copynumber: 8.7 Consensus size: 7
4904849 ATTAAATTAT
4904859 TTTTAGA
1 TTTTAGA
4904866 CTTTTAGA
1 -TTTTAGA
4904874 TTTTAG-
1 TTTTAGA
4904880 TTTTAG-
1 TTTTAGA
4904886 TTTTAG-
1 TTTTAGA
4904892 TTTTAG-
1 TTTTAGA
4904898 TTTTAG-
1 TTTTAGA
4904904 TTTTAGAA
1 TTTTAG-A
4904912 TTTTA
1 TTTTA
4904917 TTTTATTTAT
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
6 30 0.62
7 6 0.12
8 12 0.25
ACGTcount: A:0.22, C:0.02, G:0.14, T:0.62
Consensus pattern (7 bp):
TTTTAGA
Found at i:4904885 original size:6 final size:6
Alignment explanation
Indices: 4904867--4904909 Score: 77
Period size: 6 Copynumber: 7.0 Consensus size: 6
4904857 ATTTTTAGAC
4904867 TTTTAG ATTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG
1 TTTTAG -TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG
4904910 AATTTTATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 30 0.83
7 6 0.17
ACGTcount: A:0.19, C:0.00, G:0.16, T:0.65
Consensus pattern (6 bp):
TTTTAG
Found at i:4904897 original size:18 final size:19
Alignment explanation
Indices: 4904867--4904921 Score: 87
Period size: 18 Copynumber: 2.9 Consensus size: 19
4904857 ATTTTTAGAC
4904867 TTTTAGATTTTAGTTTTAG
1 TTTTAGATTTTAGTTTTAG
4904886 TTTTAG-TTTTAGTTTTAG
1 TTTTAGATTTTAGTTTTAG
4904904 TTTTAGAATTTTA-TTTTA
1 TTTTAG-ATTTTAGTTTTA
4904922 TTTATTAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 18 0.53
19 11 0.32
20 5 0.15
ACGTcount: A:0.22, C:0.00, G:0.13, T:0.65
Consensus pattern (19 bp):
TTTTAGATTTTAGTTTTAG
Found at i:4904976 original size:13 final size:13
Alignment explanation
Indices: 4904958--4904991 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
4904948 GATTGGGTTG
4904958 GGTTGGGTAATTA
1 GGTTGGGTAATTA
*
4904971 GGTTGGGTAATTG
1 GGTTGGGTAATTA
4904984 GGTTGGGT
1 GGTTGGGT
4904992 TGAATACTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.47, T:0.38
Consensus pattern (13 bp):
GGTTGGGTAATTA
Found at i:4906488 original size:6 final size:6
Alignment explanation
Indices: 4906477--4906501 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
4906467 CCCTCCCTAA
4906477 TTTCAC TTTCAC TTTCAC TTTCAC T
1 TTTCAC TTTCAC TTTCAC TTTCAC T
4906502 CACAATCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (6 bp):
TTTCAC
Found at i:4907589 original size:37 final size:37
Alignment explanation
Indices: 4907480--4907591 Score: 170
Period size: 37 Copynumber: 3.0 Consensus size: 37
4907470 ATTTTAATTC
* *
4907480 AAGACTTATGTAATGTTTTTAGTTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTTA
* *
4907517 AAGACTTATGTAATATTTTTAATTATGCAGTGATTTA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTTA
* *
4907554 AAGATTTATGTAATGCTTTTAATTATGTAGTGATTTA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTTA
4907591 A
1 A
4907592 TTTGGATAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.46
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTTA
Found at i:4907831 original size:12 final size:12
Alignment explanation
Indices: 4907814--4907838 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4907804 AACAAGTTCG
4907814 GGTCGGTTAACC
1 GGTCGGTTAACC
4907826 GGTCGGTTAACC
1 GGTCGGTTAACC
4907838 G
1 G
4907839 ACTGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:4909365 original size:18 final size:18
Alignment explanation
Indices: 4909342--4909384 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
4909332 TGGCAGGTGC
* *
4909342 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
4909360 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
4909378 GTTTCCT
1 GTATCCT
4909385 TTTTCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:4909671 original size:21 final size:21
Alignment explanation
Indices: 4909647--4909686 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
4909637 CTACCGGATG
*
4909647 AACCAAAATCCACGCCGGAGC
1 AACCAAAACCCACGCCGGAGC
* *
4909668 AACCACAACCCTCGCCGGA
1 AACCAAAACCCACGCCGGA
4909687 AGCTGGACAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.42, G:0.17, T:0.05
Consensus pattern (21 bp):
AACCAAAACCCACGCCGGAGC
Found at i:4909862 original size:49 final size:49
Alignment explanation
Indices: 4909808--4910013 Score: 349
Period size: 49 Copynumber: 4.2 Consensus size: 49
4909798 TATATTAATG
* * *
4909808 TAATAAAAGACAAAATAGTTTATTTTGAATATTTTGATATTATTTGATA
1 TAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTCATT
* *
4909857 TAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTAATG
1 TAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTCATT
*
4909906 TAATAAAATACAAAATAGTTTATTTTGAATTTTTTGATATTATTTCATT
1 TAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTCATT
*
4909955 TAATAAAATATAAAATAGTTTATTTTGAATATTTTGATATTATTTCATT
1 TAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTCATT
4910004 TAATAAAATA
1 TAATAAAATA
4910014 ATGAATATTT
Statistics
Matches: 149, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 149 1.00
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (49 bp):
TAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTCATT
Found at i:4913802 original size:125 final size:125
Alignment explanation
Indices: 4913541--4913951 Score: 716
Period size: 125 Copynumber: 3.3 Consensus size: 125
4913531 CCCAAACATG
* * * * * *
4913541 CTACTGTAGCAAAAATGCGTCCATGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAACGCGTCCACGTGGGAGCGATTTTAGAAATTCTTCTGACAAAACATCCTAC
*
4913606 TTGAAGC-TTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGAC
66 TTGAAGCTTTTTTTATACTATTTGCTCAGAAACATCAACTCAAAATTATTTTTTCAGGAC
*
4913665 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTTAGAAATTCTTCTGACAAAACATCCTAC
1 CTACTGTAGCAAAAACGCGTCCACGTGGGAGCGATTTTAGAAATTCTTCTGACAAAACATCCTAC
4913730 TTGAAGCTTTTTTTATACTATTTGCTCAGAAACATCAACTCAAAATTATTTTTTCAGGAC
66 TTGAAGCTTTTTTTATACTATTTGCTCAGAAACATCAACTCAAAATTATTTTTTCAGGAC
*
4913790 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTTAGAAATTCTTCTGACAAAACATCCTAC
1 CTACTGTAGCAAAAACGCGTCCACGTGGGAGCGATTTTAGAAATTCTTCTGACAAAACATCCTAC
4913855 TTGAAGCTTTTTTTATACTATTTGCTCAGAAACATCAACTCAAAATTATTTTTTCAGGAC
66 TTGAAGCTTTTTTTATACTATTTGCTCAGAAACATCAACTCAAAATTATTTTTTCAGGAC
* *
4913915 CTACTATAGCAAAAACGCGTCCACGTGGGAGTGATTT
1 CTACTGTAGCAAAAACGCGTCCACGTGGGAGCGATTT
4913952 CCTTAATAAA
Statistics
Matches: 275, Mismatches: 11, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
124 65 0.24
125 210 0.76
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (125 bp):
CTACTGTAGCAAAAACGCGTCCACGTGGGAGCGATTTTAGAAATTCTTCTGACAAAACATCCTAC
TTGAAGCTTTTTTTATACTATTTGCTCAGAAACATCAACTCAAAATTATTTTTTCAGGAC
Found at i:4931064 original size:12 final size:13
Alignment explanation
Indices: 4931038--4931065 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
4931028 ACTTTTCCAC
4931038 AATACTTTTTAAA
1 AATACTTTTTAAA
4931051 AATACTTTTTAAA
1 AATACTTTTTAAA
4931064 AA
1 AA
4931066 CAATGCTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (13 bp):
AATACTTTTTAAA
Found at i:4941688 original size:42 final size:42
Alignment explanation
Indices: 4941622--4941955 Score: 524
Period size: 42 Copynumber: 7.9 Consensus size: 42
4941612 AGCGTTTACA
*
4941622 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
* * *
4941664 AAAAAAGCGCCTCTAAATACCATGTTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
* * *
4941706 AAAAAAACGCCGCTAAAGAACATGTTCTTTAACAGCGCTTAG
1 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
*
4941748 AAAAAAACGCCTCTAAAGACCATGTTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
*
4941790 AAAAAAAAAAGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
1 --AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
* *
4941834 AAAAAAAACGCCGCTAAAGACCATATTCTTTAGTGGCGCTTAG
1 -AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
4941877 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
* *
4941919 AAAAAAACGCCGCTAAAGATCATGTTTTTTAGCGGCG
1 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCG
4941956 TTTTTATACA
Statistics
Matches: 267, Mismatches: 23, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
42 187 0.70
43 40 0.15
44 40 0.15
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.23
Consensus pattern (42 bp):
AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
Found at i:4941905 original size:171 final size:170
Alignment explanation
Indices: 4941621--4941955 Score: 544
Period size: 171 Copynumber: 2.0 Consensus size: 170
4941611 CAGCGTTTAC
* * * *
4941621 AAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAGCGCCTCTAAATACCA
1 AAAAAAAAAGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGACCA
*
4941686 TGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGTTCTTTAACAGCGCTTAGAAA
66 TATTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGTTCTTTAACAGCGCTTAGAAA
*
4941751 AAAACGCCTCTAAAGACCATGTTCTTTAGCGGCGCTTAGA
131 AAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGA
*
4941791 AAAAAAAAAGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAAACGCCGCTAAAGACC
1 AAAAAAAAAGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG-AAAAAAACGCCGCTAAAGACC
* * * *
4941856 ATATTCTTTAGTGGCGCTTAGAAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
65 ATATTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGTTCTTTAACAGCGCTTAGAA
* *
4941921 AAAAACGCCGCTAAAGATCATGTTTTTTAGCGGCG
130 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCG
4941956 TTTTTATACA
Statistics
Matches: 151, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
170 41 0.27
171 110 0.73
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.23
Consensus pattern (170 bp):
AAAAAAAAAGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGACCA
TATTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGTTCTTTAACAGCGCTTAGAAA
AAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGA
Found at i:4946278 original size:9 final size:9
Alignment explanation
Indices: 4946260--4946493 Score: 213
Period size: 9 Copynumber: 25.8 Consensus size: 9
4946250 TGATATATTT
4946260 TTATGTAAG
1 TTATGTAAG
*
4946269 TTATGCAAG
1 TTATGTAAG
4946278 TTTATGTAAG
1 -TTATGTAAG
4946288 TTATGTAAG
1 TTATGTAAG
*
4946297 TTACT-TAAT
1 TTA-TGTAAG
4946306 TTATGTAAG
1 TTATGTAAG
*
4946315 TTATGGAAG
1 TTATGTAAG
* *
4946324 TTATTTAAT
1 TTATGTAAG
*
4946333 TTATGTAGG
1 TTATGTAAG
4946342 TTATGTAAG
1 TTATGTAAG
* *
4946351 TTATTTAAT
1 TTATGTAAG
*
4946360 TTATGCAAG
1 TTATGTAAG
*
4946369 TTTATGTATG
1 -TTATGTAAG
*
4946379 TTATGTAGG
1 TTATGTAAG
*
4946388 TTACT-TAAT
1 TTA-TGTAAG
4946397 TTATGTAAG
1 TTATGTAAG
4946406 TTATGTAAG
1 TTATGTAAG
* *
4946415 TTATTTAAT
1 TTATGTAAG
*
4946424 TTATGTAGG
1 TTATGTAAG
4946433 TTATGTAAG
1 TTATGTAAG
*
4946442 TTATGTAAC
1 TTATGTAAG
* *
4946451 TTATTTAAT
1 TTATGTAAG
4946460 TTAT-TCAAG
1 TTATGT-AAG
4946469 TTATGTAAG
1 TTATGTAAG
* * *
4946478 TAATTTAAT
1 TTATGTAAG
4946487 TTATGTA
1 TTATGTA
4946494 TAAGCTTGTA
Statistics
Matches: 179, Mismatches: 38, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
8 3 0.02
9 158 0.88
10 18 0.10
ACGTcount: A:0.32, C:0.03, G:0.17, T:0.49
Consensus pattern (9 bp):
TTATGTAAG
Found at i:4950000 original size:114 final size:114
Alignment explanation
Indices: 4949793--4950009 Score: 242
Period size: 114 Copynumber: 1.9 Consensus size: 114
4949783 ATTAAGTTTC
* * *
4949793 TTGCGGCGTTTTAATCAAAAGCGCCACTAAAAGCTGATATCAGCGGCGTTTCCAAATAAGCGCCA
1 TTGCGGCGTCTTAAGCAAAAGCGCCACTAAAAGCTGATATCAGCGGCGTTTACAAATAAGCGCCA
* ** * * *
4949858 CTAATGAATCTATACGTGTAGTCGAAACGATGCGTTTCCCTAAGAAATT
66 CTAATGAAGCTATACGTCAAGACCAAACGATGCATTTCCCTAAGAAATT
* ** *
4949907 TTGCGGCG-CTTAAGCATAAGCGCCACTAAAAGCTGATATTCAGCGGCGTTTACGGATAAGCGTC
1 TTGCGGCGTCTTAAGCAAAAGCGCCACTAAAAGCTGATA-TCAGCGGCGTTTACAAATAAGCGCC
* * *
4949971 AGTAAATG-CGCTATA-GCTCAAGACCAAACGTTGCATTTC
65 ACT-AATGAAGCTATACG-TCAAGACCAAACGATGCATTTC
4950010 GGCTTCACAT
Statistics
Matches: 84, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
113 28 0.33
114 52 0.62
115 4 0.05
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (114 bp):
TTGCGGCGTCTTAAGCAAAAGCGCCACTAAAAGCTGATATCAGCGGCGTTTACAAATAAGCGCCA
CTAATGAAGCTATACGTCAAGACCAAACGATGCATTTCCCTAAGAAATT
Found at i:4950414 original size:75 final size:75
Alignment explanation
Indices: 4950291--4950445 Score: 274
Period size: 75 Copynumber: 2.1 Consensus size: 75
4950281 ATCCACTTCA
*
4950291 GCGGCGTTTTTACAGAAACGCCACAAATTCAACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
1 GCGGCATTTTTACAGAAACGCCACAAATTCAACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
4950356 AACATTTTTT
66 AACATTTTTT
** *
4950366 GCGGCATTTTTACAGAAACGCCATTAATTCCACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
1 GCGGCATTTTTACAGAAACGCCACAAATTCAACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
4950431 AACATTTTTT
66 AACATTTTTT
4950441 GCGGC
1 GCGGC
4950446 GCTTACAAGC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.37
Consensus pattern (75 bp):
GCGGCATTTTTACAGAAACGCCACAAATTCAACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
AACATTTTTT
Found at i:4950517 original size:189 final size:190
Alignment explanation
Indices: 4950176--4950559 Score: 626
Period size: 189 Copynumber: 2.0 Consensus size: 190
4950166 ATGTGCTTTA
* * *
4950176 GCGGCGTTTTTATAGAAACGCCACCAATTCTACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
1 GCGGCATTTTTACAGAAACGCCACCAATTCCACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
* * *
4950241 AACATTTTTTTGTGGCGCTTACAAACAAACGCCGTTAATGATCCACTTCAGCGGCGTTTTTACAG
66 AACATTTTTTTGCGGCGCTTACAAACAAACGCCGCTAATGATCCACTTCAGCGGCGTTTTGACAG
*
4950306 AAACGCCACAAATTCAACTATACCTCAATCTTGTACGCTGCGTTTTGTTTAACATTTTTT
131 AAACGCCACAAATTCAACTATACCTCAATCCTGTACGCTGCGTTTTGTTTAACATTTTTT
**
4950366 GCGGCATTTTTACAGAAACGCCATTAATTCCACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
1 GCGGCATTTTTACAGAAACGCCACCAATTCCACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
* * *
4950431 AACA-TTTTTTGCGGCGCTTACAAGCAAATGCTGCTAATGATCCACTTCAGCGGCGTTTTGACAG
66 AACATTTTTTTGCGGCGCTTACAAACAAACGCCGCTAATGATCCACTTCAGCGGCGTTTTGACAG
* *
4950495 AAACGCCACCAATTCTACTATACCTCAATCCTGTACGCTGCGTTTTGTTTAACATTTTTT
131 AAACGCCACAAATTCAACTATACCTCAATCCTGTACGCTGCGTTTTGTTTAACATTTTTT
*
4950555 ACGGC
1 GCGGC
4950560 GCTTACAAAC
Statistics
Matches: 179, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
189 115 0.64
190 64 0.36
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (190 bp):
GCGGCATTTTTACAGAAACGCCACCAATTCCACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
AACATTTTTTTGCGGCGCTTACAAACAAACGCCGCTAATGATCCACTTCAGCGGCGTTTTGACAG
AAACGCCACAAATTCAACTATACCTCAATCCTGTACGCTGCGTTTTGTTTAACATTTTTT
Found at i:4950566 original size:114 final size:114
Alignment explanation
Indices: 4950366--4950922 Score: 898
Period size: 114 Copynumber: 4.9 Consensus size: 114
4950356 AACATTTTTT
* ** *
4950366 GCGGCATTTTTACAGAAACGCCATTAATTCCACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
1 GCGGCGTTTTTACAGAAACGCCACCAATTCTACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
* * *
4950431 AACATTTTTTGCGGCGCTTACAAGCAAATGCTGCTAATGATCCACTTCA
66 AACATTTTTTGCGGCGCTTACAAACAAACGCCGCTAATGATCCACTTCA
* *
4950480 GCGGCGTTTTGACAGAAACGCCACCAATTCTACTATACCTCAATCCTGTACGCTGCGTTTTGTTT
1 GCGGCGTTTTTACAGAAACGCCACCAATTCTACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
* * * *
4950545 AACATTTTTTACGGCGCTTACAAACAAATGTCGCTAATGATACACTTCA
66 AACATTTTTTGCGGCGCTTACAAACAAACGCCGCTAATGATCCACTTCA
* * *
4950594 GTGGCGTTTTTACAGAAACGCCACCAATTCTACTATACCTCAATCTTGTACGTTGCATTTTGTTT
1 GCGGCGTTTTTACAGAAACGCCACCAATTCTACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
* *
4950659 AACATTTTTTGCGGCGCTTACAAACAAACGCCGCTATTTATCCACTTCA
66 AACATTTTTTGCGGCGCTTACAAACAAACGCCGCTAATGATCCACTTCA
4950708 GCGGCGTTTTTACAGAAACGCCACCAATTCTACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
1 GCGGCGTTTTTACAGAAACGCCACCAATTCTACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
* *
4950773 AACATTTTTTACGGCGCTTACAAACAAACGCCGCTAATGATCCACTCCA
66 AACATTTTTTGCGGCGCTTACAAACAAACGCCGCTAATGATCCACTTCA
* * *
4950822 GCGGCATTTTTATAGAAACGCCACCAATTCTACTATACCTCAATCTTGTACGCTACGTTTTGTTT
1 GCGGCGTTTTTACAGAAACGCCACCAATTCTACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
*
4950887 AACATTGTTTGCGGCGCTTACAAACAAACGCCGCTA
66 AACATTTTTTGCGGCGCTTACAAACAAACGCCGCTA
4950923 CTGCCACTAT
Statistics
Matches: 409, Mismatches: 34, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 409 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (114 bp):
GCGGCGTTTTTACAGAAACGCCACCAATTCTACTATACCTCAATCTTGTACGCTGCGTTTTGTTT
AACATTTTTTGCGGCGCTTACAAACAAACGCCGCTAATGATCCACTTCA
Found at i:4954340 original size:43 final size:45
Alignment explanation
Indices: 4954214--4954340 Score: 102
Period size: 42 Copynumber: 2.8 Consensus size: 45
4954204 AAAGATTGCT
4954214 TATGTAAGCTATATTTAAATTTTATTAATAATAAATTGACAACTTAAA
1 TATGTAAGCTATATTTAAATTTTATTAATAAT--ATT-ACAACTTAAA
* * * * **
4954262 TAAGTATTA-CTATATTTTTAATATTA-TACAT-ATATT-C-ATTTACG
1 TATGTA--AGCTATA-TTTAAATTTTATTA-ATAATATTACAACTTAAA
4954306 TATGTAAGCTATATTTAAATTTTATTAATAATATT
1 TATGTAAGCTATATTTAAATTTTATTAATAATATT
4954341 TAAACATATT
Statistics
Matches: 63, Mismatches: 9, Indels: 19
0.69 0.10 0.21
Matches are distributed among these distances:
42 12 0.19
43 12 0.19
44 9 0.14
45 1 0.02
47 3 0.05
48 5 0.08
49 9 0.14
50 12 0.19
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (45 bp):
TATGTAAGCTATATTTAAATTTTATTAATAATATTACAACTTAAA
Found at i:4958702 original size:21 final size:21
Alignment explanation
Indices: 4958676--4958722 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
4958666 CTACAACTTA
* *
4958676 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCCGCAACGAGGG
4958697 AAGCAGAGGCCGCAACGAGGG
1 AAGCAGAGGCCGCAACGAGGG
4958718 AAGCA
1 AAGCA
4958723 AAGCAGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.34, C:0.21, G:0.45, T:0.00
Consensus pattern (21 bp):
AAGCAGAGGCCGCAACGAGGG
Found at i:4959304 original size:41 final size:42
Alignment explanation
Indices: 4959131--4959333 Score: 318
Period size: 42 Copynumber: 4.8 Consensus size: 42
4959121 TAAGAATAAA
4959131 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCG-TTTTTTTCTAAG
* *
4959174 CGCCGCTAACGAACATAGTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* * * *
4959216 CGCTGCTAAAGAACATGGTCTTTAGAGGCCTTTTTTTCAAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
**
4959258 CGCCGCTAAAGAACATGGTCTTTAAAGGCGTTTTTTT-TAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
4959299 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
4959334 GTTTGTAAAC
Statistics
Matches: 146, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
41 36 0.25
42 82 0.56
43 28 0.19
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
Found at i:4960297 original size:16 final size:16
Alignment explanation
Indices: 4960278--4960314 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
4960268 AAAAAATAAA
4960278 AAAAAATAAAAAATTT
1 AAAAAATAAAAAATTT
* *
4960294 AAAAAATACATAATTT
1 AAAAAATAAAAAATTT
4960310 AAAAA
1 AAAAA
4960315 GATTGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAAAATAAAAAATTT
Found at i:4961962 original size:31 final size:31
Alignment explanation
Indices: 4961924--4961987 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
4961914 CTCAAAAGTT
4961924 TTCATTTAAATCTATCAGATTGTTAAAATTG
1 TTCATTTAAATCTATCAGATTGTTAAAATTG
4961955 TTCATTTAAATCTATCAGATTGTTAAAATTG
1 TTCATTTAAATCTATCAGATTGTTAAAATTG
4961986 TT
1 TT
4961988 GTTGTATGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.47
Consensus pattern (31 bp):
TTCATTTAAATCTATCAGATTGTTAAAATTG
Found at i:4975373 original size:24 final size:24
Alignment explanation
Indices: 4975314--4975376 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
4975304 CTCCATCGTG
*
4975314 GTCTTTTTCTTCATCTTCATCTCT
1 GTCTTTGTCTTCATCTTCATCTCT
* * *
4975338 -ACTCTTGGCTTCATCTTCATCTTT
1 GTCT-TTGTCTTCATCTTCATCTCT
4975362 GTCTTTGTCTTCATC
1 GTCTTTGTCTTCATC
4975377 GTCTTTCTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
23 2 0.06
24 27 0.87
25 2 0.06
ACGTcount: A:0.10, C:0.29, G:0.08, T:0.54
Consensus pattern (24 bp):
GTCTTTGTCTTCATCTTCATCTCT
Found at i:4977496 original size:11 final size:9
Alignment explanation
Indices: 4977466--4977504 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
4977456 AATTTAAAAC
4977466 AGAACTTGAG
1 AGAA-TTGAG
4977476 AGAATTGAG
1 AGAATTGAG
*
4977485 AGAATTAAG
1 AGAATTGAG
*
4977494 AGAGTTGAG
1 AGAATTGAG
4977503 AG
1 AG
4977505 TTTAGAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
9 22 0.85
10 4 0.15
ACGTcount: A:0.44, C:0.03, G:0.33, T:0.21
Consensus pattern (9 bp):
AGAATTGAG
Found at i:4979460 original size:46 final size:44
Alignment explanation
Indices: 4979386--4979510 Score: 146
Period size: 44 Copynumber: 2.8 Consensus size: 44
4979376 CCACTAAATA
*
4979386 TTTAATTAAATTACATAGTATCTATTATAAATTATTAAAAACGAAT
1 TTTAATTAAATTACATAGTATTTATTAT-AATTATT-AAAACGAAT
* * * * *
4979432 TTTAACTAAATTACATAGTATTTGTTATAATTATTCATACTAAT
1 TTTAATTAAATTACATAGTATTTATTATAATTATTAAAACGAAT
* *
4979476 TTTAATTAAATTATATAGTATTCATTAT--TTATTAA
1 TTTAATTAAATTACATAGTATTTATTATAATTATTAA
4979511 GACTTAGCTA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
42 6 0.09
44 30 0.44
45 7 0.10
46 25 0.37
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.47
Consensus pattern (44 bp):
TTTAATTAAATTACATAGTATTTATTATAATTATTAAAACGAAT
Found at i:4986262 original size:4 final size:4
Alignment explanation
Indices: 4986253--4986281 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
4986243 ACGGTAAATT
4986253 TAAC TAAC TAAC TAAC TAAC TAAC TAAC T
1 TAAC TAAC TAAC TAAC TAAC TAAC TAAC T
4986282 TAGCATTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAC
Found at i:4989748 original size:32 final size:32
Alignment explanation
Indices: 4989712--4989797 Score: 95
Period size: 33 Copynumber: 2.7 Consensus size: 32
4989702 ACTTTTTCGA
* *
4989712 AAAATATTTTCAGGAAATC-TGCCAAACAGCAG
1 AAAATATTTTCAGCAAATCAT-CCAAACACCAG
*
4989744 AAAATATTTTACA-CAGATTCATCCAAACACCAG
1 AAAATATTTT-CAGCA-AATCATCCAAACACCAG
*
4989777 AAAATATTTTCAGTAAATCAT
1 AAAATATTTTCAGCAAATCAT
4989798 TTTCTAGAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
32 18 0.40
33 26 0.58
34 1 0.02
ACGTcount: A:0.45, C:0.19, G:0.09, T:0.27
Consensus pattern (32 bp):
AAAATATTTTCAGCAAATCATCCAAACACCAG
Found at i:4989813 original size:20 final size:20
Alignment explanation
Indices: 4989788--4989827 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
4989778 AAATATTTTC
* *
4989788 AGTAAATCATTTTCTAGAAA
1 AGTAAATCACTTTCCAGAAA
4989808 AGTAAATCACTTTCCAGAAA
1 AGTAAATCACTTTCCAGAAA
4989828 TTATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (20 bp):
AGTAAATCACTTTCCAGAAA
Found at i:4993134 original size:69 final size:66
Alignment explanation
Indices: 4993037--4993167 Score: 174
Period size: 69 Copynumber: 1.9 Consensus size: 66
4993027 TTCAAATAAG
** *
4993037 AAAAGACAAAACTACATCGTTTTGATAAATGTTCACCTTTTCTAAATTAAAAGTCAAAATCATTA
1 AAAAGACAAAACTACATCGTTTTGATAAA-GTTCA-CTCAT-TAAATTAAAAGGCAAAATCATTA
4993102 AGTT
63 AGTT
* *
4993106 AAAAGACAAAACTACGA-CGTTTTGATAAAGTTTACTCATTAAGTTAAAAGGCAAAATCATTA
1 AAAAGACAAAACTAC-ATCGTTTTGATAAAGTTCACTCATTAAATTAAAAGGCAAAATCATTA
4993168 TATTGTTTAT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
66 21 0.38
67 3 0.05
68 4 0.07
69 27 0.48
70 1 0.02
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.31
Consensus pattern (66 bp):
AAAAGACAAAACTACATCGTTTTGATAAAGTTCACTCATTAAATTAAAAGGCAAAATCATTAAGT
T
Found at i:5004008 original size:19 final size:22
Alignment explanation
Indices: 5003966--5004013 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 22
5003956 GATGATTACA
5003966 TATATATATATATGTTAACTTAT
1 TATATATATATATGTTAAC-TAT
5003989 TATATAT-TATATGTT-A-TAT
1 TATATATATATATGTTAACTAT
5004008 TATATA
1 TATATA
5004014 ATAAGAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.36
21 1 0.04
22 8 0.32
23 7 0.28
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (22 bp):
TATATATATATATGTTAACTAT
Found at i:5009152 original size:16 final size:17
Alignment explanation
Indices: 5009131--5009172 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
5009121 CTCTTGTCCT
*
5009131 TATCCCTATCCACTT-C
1 TATCCCTATCCAATTAC
*
5009147 TATCCCAATCCAATTAC
1 TATCCCTATCCAATTAC
*
5009164 CATCCCTAT
1 TATCCCTAT
5009173 AGTCTTCCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.26, C:0.40, G:0.00, T:0.33
Consensus pattern (17 bp):
TATCCCTATCCAATTAC
Found at i:5011057 original size:17 final size:18
Alignment explanation
Indices: 5011026--5011059 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
5011016 TAATTTAATT
5011026 TAATTAAATTATTTAAAA
1 TAATTAAATTATTTAAAA
*
5011044 TAATT-AATTTTTTAAA
1 TAATTAAATTATTTAAA
5011060 TTATAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATTAAATTATTTAAAA
Found at i:5011299 original size:21 final size:21
Alignment explanation
Indices: 5011273--5011356 Score: 109
Period size: 21 Copynumber: 4.1 Consensus size: 21
5011263 CCTTAAACCC
5011273 TAAGGTTTAGGGTTTGAGATT
1 TAAGGTTTAGGGTTTGAGATT
5011294 TAAGGTTTAGGGTTTGAGATT
1 TAAGGTTTAGGGTTTGAGATT
* *
5011315 TTAGGTTTAAGGTTTGAG-TT
1 TAAGGTTTAGGGTTTGAGATT
** *
5011335 T-AGGTTCGGGGTTTGAGGTT
1 TAAGGTTTAGGGTTTGAGATT
5011355 TA
1 TA
5011357 GGCTTTAAGT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
19 13 0.23
20 6 0.11
21 37 0.66
ACGTcount: A:0.20, C:0.01, G:0.35, T:0.44
Consensus pattern (21 bp):
TAAGGTTTAGGGTTTGAGATT
Found at i:5011300 original size:14 final size:14
Alignment explanation
Indices: 5011275--5011365 Score: 64
Period size: 14 Copynumber: 6.6 Consensus size: 14
5011265 TTAAACCCTA
*
5011275 AGGTTTAGGGTTTG
1 AGGTTTAAGGTTTG
*
5011289 AGATTTAAGGTTT-
1 AGGTTTAAGGTTTG
* * *
5011302 AGGGTTTGAGATTTT
1 A-GGTTTAAGGTTTG
5011317 AGGTTTAAGGTTTG
1 AGGTTTAAGGTTTG
*
5011331 A-GTTT-AGGTTCG
1 AGGTTTAAGGTTTG
* *
5011343 GGGTTTGAGGTTT-
1 AGGTTTAAGGTTTG
5011356 AGGCTTTAAG
1 AGG-TTTAAG
5011366 TTTAAGATTT
Statistics
Matches: 59, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
12 6 0.10
13 11 0.19
14 41 0.69
15 1 0.02
ACGTcount: A:0.20, C:0.02, G:0.35, T:0.43
Consensus pattern (14 bp):
AGGTTTAAGGTTTG
Found at i:5011354 original size:7 final size:7
Alignment explanation
Indices: 5011283--5011355 Score: 53
Period size: 7 Copynumber: 10.7 Consensus size: 7
5011273 TAAGGTTTAG
5011283 GGTTTGA
1 GGTTTGA
* *
5011290 GATTTAA
1 GGTTTGA
5011297 GGTTT-A
1 GGTTTGA
5011303 GGGTTTGA
1 -GGTTTGA
* *
5011311 GATTTTA
1 GGTTTGA
*
5011318 GGTTTAA
1 GGTTTGA
5011325 GGTTTGA
1 GGTTTGA
5011332 -GTTT-A
1 GGTTTGA
* *
5011337 GGTTCGG
1 GGTTTGA
5011344 GGTTTGA
1 GGTTTGA
5011351 GGTTT
1 GGTTT
5011356 AGGCTTTAAG
Statistics
Matches: 50, Mismatches: 12, Indels: 8
0.71 0.17 0.11
Matches are distributed among these distances:
5 1 0.02
6 8 0.16
7 40 0.80
8 1 0.02
ACGTcount: A:0.18, C:0.01, G:0.36, T:0.45
Consensus pattern (7 bp):
GGTTTGA
Found at i:5011938 original size:22 final size:22
Alignment explanation
Indices: 5011843--5011954 Score: 57
Period size: 22 Copynumber: 4.9 Consensus size: 22
5011833 TTTTTGTTAA
*
5011843 AATTT-AATATAATAAATAAATTAT
1 AATTTAAATAAAAT-AATAAA--AT
* **
5011867 AATTTAAATATAAATAAGGATTAT
1 AATTTAAATA-AAATAA-TAAAAT
* * **
5011891 TATTTAAATATAA-AATAATTT
1 AATTTAAATAAAATAATAAAAT
5011912 AAATTTAAATAAAATAATAAAAT
1 -AATTTAAATAAAATAATAAAAT
* *
5011935 AATTTAGATAACAAAAATAA
1 AATTTAAATAA-AATAATAA
5011955 CTTTTGTTAA
Statistics
Matches: 67, Mismatches: 15, Indels: 13
0.71 0.16 0.14
Matches are distributed among these distances:
21 3 0.04
22 23 0.34
23 15 0.22
24 16 0.24
25 6 0.09
26 4 0.06
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.37
Consensus pattern (22 bp):
AATTTAAATAAAATAATAAAAT
Found at i:5015261 original size:72 final size:72
Alignment explanation
Indices: 5015181--5015324 Score: 252
Period size: 72 Copynumber: 2.0 Consensus size: 72
5015171 CCGGTTAAGT
* *
5015181 ATATAGAAATATCAAATAAATTTGAGTTGACATATTTAATAATGTATGGTGTGCCTCATATTTTC
1 ATATAGAAATACCAAATAAATTTGAGTTGACATATTTAATAATGTAGGGTGTGCCTCATATTTTC
*
5015246 AGTTGAA
66 AGCTGAA
*
5015253 ATATAGAAATACCAAATAAATTTGAGTTGACATATTTAATAATGTGGGGTGTGCCTCATATTTTC
1 ATATAGAAATACCAAATAAATTTGAGTTGACATATTTAATAATGTAGGGTGTGCCTCATATTTTC
5015318 AGCTGAA
66 AGCTGAA
5015325 TAGACAACGA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (72 bp):
ATATAGAAATACCAAATAAATTTGAGTTGACATATTTAATAATGTAGGGTGTGCCTCATATTTTC
AGCTGAA
Found at i:5019704 original size:27 final size:27
Alignment explanation
Indices: 5019674--5019851 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
5019664 ATATTGAGCC
* *
5019674 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
5019701 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
5019728 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
* ** ** *
5019756 CGCACTCTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
5019783 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
5019810 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
5019837 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
5019852 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 101 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:5019813 original size:82 final size:81
Alignment explanation
Indices: 5019695--5019850 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
5019685 TGCTATATAA
* * *
5019695 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
*
5019760 CTCTTAGTGCCGCATGG
65 CCCTTAGTGCCGCATGG
* * **
5019777 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
5019841 CCCTTAGTGC
65 CCCTTAGTGC
5019851 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.74
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
CCTTAGTGCCGCATGG
Found at i:5021652 original size:28 final size:28
Alignment explanation
Indices: 5021612--5021669 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
5021602 TTGTCTTCAC
5021612 ATCCATTTGATGTACCAACAAATTGTGA
1 ATCCATTTGATGTACCAACAAATTGTGA
* *
5021640 ATCCATTTGATGTACTAGCAAATTGTGA
1 ATCCATTTGATGTACCAACAAATTGTGA
5021668 AT
1 AT
5021670 GAAATCTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (28 bp):
ATCCATTTGATGTACCAACAAATTGTGA
Found at i:5024982 original size:22 final size:22
Alignment explanation
Indices: 5024934--5024975 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
5024924 GTAGTAATAG
* * *
5024934 AAGGGTAAAATAGTAAATATGC
1 AAGGGCAAAAGAGTAAAAATGC
5024956 AAGGGCAAAAGAGTAAAAAT
1 AAGGGCAAAAGAGTAAAAAT
5024976 CATAGGGTCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.55, C:0.05, G:0.24, T:0.17
Consensus pattern (22 bp):
AAGGGCAAAAGAGTAAAAATGC
Found at i:5026362 original size:26 final size:27
Alignment explanation
Indices: 5026312--5026381 Score: 108
Period size: 26 Copynumber: 2.6 Consensus size: 27
5026302 AAAAATAAAA
5026312 ATTTACCAAAATAT-TATAACTTTTTTT
1 ATTTACCAAAATATATATAAC-TTTTTT
5026339 ATTTACCAAAATATATATAA-TTTTTT
1 ATTTACCAAAATATATATAACTTTTTT
*
5026365 ATTTACGAAAATATATA
1 ATTTACCAAAATATATA
5026382 AAAAAACCTG
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 22 0.54
27 14 0.34
28 5 0.12
ACGTcount: A:0.43, C:0.09, G:0.01, T:0.47
Consensus pattern (27 bp):
ATTTACCAAAATATATATAACTTTTTT
Found at i:5038491 original size:58 final size:58
Alignment explanation
Indices: 5038421--5038536 Score: 187
Period size: 58 Copynumber: 2.0 Consensus size: 58
5038411 TGTGGCGTTA
5038421 GCTATACCTTTGGTTCCTATCTCGTTAGATAATGGGTCAAGGTTTATTTACTGATTTC
1 GCTATACCTTTGGTTCCTATCTCGTTAGATAATGGGTCAAGGTTTATTTACTGATTTC
* * * * *
5038479 GCTATACCTTTGGTTGCTTTCTTGTTAGATAGTGGGTCAAGGTTTATTTGCTGATTTC
1 GCTATACCTTTGGTTCCTATCTCGTTAGATAATGGGTCAAGGTTTATTTACTGATTTC
5038537 ATTTTTTCAT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.18, C:0.16, G:0.22, T:0.45
Consensus pattern (58 bp):
GCTATACCTTTGGTTCCTATCTCGTTAGATAATGGGTCAAGGTTTATTTACTGATTTC
Found at i:5046352 original size:12 final size:12
Alignment explanation
Indices: 5046337--5046386 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 12
5046327 ATTTTTCGAT
5046337 TTTTTTTTTAAA
1 TTTTTTTTTAAA
* **
5046349 TTTTCTTTTCGA
1 TTTTTTTTTAAA
5046361 -TTTTTTTT-AA
1 TTTTTTTTTAAA
5046371 TTTTTTTTTCAAA
1 TTTTTTTTT-AAA
5046384 TTT
1 TTT
5046387 CCTCTTCTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
10 1 0.03
11 15 0.50
12 9 0.30
13 5 0.17
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.74
Consensus pattern (12 bp):
TTTTTTTTTAAA
Found at i:5046367 original size:22 final size:22
Alignment explanation
Indices: 5046339--5046380 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
5046329 TTTTCGATTT
5046339 TTTTTTTAAATTTTCTTTTCGA
1 TTTTTTTAAATTTTCTTTTCGA
* *
5046361 TTTTTTTTAATTTTTTTTTC
1 TTTTTTTAAATTTTCTTTTC
5046381 AAATTTCCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTTTTTAAATTTTCTTTTCGA
Found at i:5046400 original size:35 final size:35
Alignment explanation
Indices: 5046335--5046403 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
5046325 CGATTTTTCG
* * *
5046335 ATTTTTTTTTTAAATTTTCTTTTCGATTTTTTTTA
1 ATTTTTTTTTCAAATTTCCTCTTCGATTTTTTTTA
**
5046370 ATTTTTTTTTCAAATTTCCTCTTCTCTTTTTTTT
1 ATTTTTTTTTCAAATTTCCTCTTCGATTTTTTTT
5046404 TTCAATTACA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.14, C:0.12, G:0.01, T:0.72
Consensus pattern (35 bp):
ATTTTTTTTTCAAATTTCCTCTTCGATTTTTTTTA
Found at i:5049085 original size:42 final size:41
Alignment explanation
Indices: 5048945--5049067 Score: 158
Period size: 41 Copynumber: 3.0 Consensus size: 41
5048935 TTAAATAGAT
* * * * *
5048945 TCACCGGCACTTAGTCTGTTAGACTTAAAGCCTGATTCAGA
1 TCACCGACACTTAGCCTGCTAGGCTTAAAACCTGATTCAGA
*
5048986 TCACCTG-CACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
1 TCACC-GACACTTAGCCTGCTAGGCTTAAAACCTGATTCAGA
*
5049027 TCACCGACACTTAGCCTGCTAGGTTTTAAAACCTGATTCAG
1 TCACCGACACTTAGCCTGCTAGG-CTTAAAACCTGATTCAG
5049068 TACACTGGCT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
40 1 0.01
41 55 0.76
42 16 0.22
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (41 bp):
TCACCGACACTTAGCCTGCTAGGCTTAAAACCTGATTCAGA
Found at i:5049643 original size:76 final size:75
Alignment explanation
Indices: 5049432--5049646 Score: 216
Period size: 77 Copynumber: 2.8 Consensus size: 75
5049422 TACATTTAAC
* * ** *
5049432 ATTCGAATCTCACATATACCTATATAATTTCATATCCCAT-TTCAATACAAGAACTTATACATGT
1 ATTCGAATCTAACATATACATATATAATTTCAT-TCTTATATTCAATACAAGAA-TTATACATGC
* *
5049496 ACATATATACAT
64 ACACACATACAT
* * * * * * *
5049508 ATTCGAATCTACATATATACATATATAATTTTATACTTACATTCAAAACAAGTATTTATACTTGC
1 ATTCGAATCTA-ACATATACATATATAATTTCATTCTTATATTCAATACAAG-AATTATACATGC
*
5049573 ATACACATACAT
64 ACACACATACAT
* * *
5049585 ATTCGAATTTAACATATACATATATAATTTCATTCTTATACTCAATATAAGCAATTATACAT
1 ATTCGAATCTAACATATACATATATAATTTCATTCTTATATTCAATACAAG-AATTATACAT
5049647 ATGTATACAT
Statistics
Matches: 110, Mismatches: 26, Indels: 6
0.77 0.18 0.04
Matches are distributed among these distances:
76 53 0.48
77 56 0.51
78 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.38
Consensus pattern (75 bp):
ATTCGAATCTAACATATACATATATAATTTCATTCTTATATTCAATACAAGAATTATACATGCAC
ACACATACAT
Found at i:5052300 original size:51 final size:51
Alignment explanation
Indices: 5052237--5052340 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 51
5052227 GCTCGATGCC
* *
5052237 TAGCAGGTTTAATGCCGGTGAATTATTTCAGACTTTATGTCTAGCAGGCTT
1 TAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGACTAGCAGGCTT
*
5052288 TAGCAGGCTTAATGCCGGTGAATTATTTTAGACTTTATGACTAGCAGGCTT
1 TAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGACTAGCAGGCTT
5052339 TA
1 TA
5052341 TGCCGGTGTA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (51 bp):
TAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGACTAGCAGGCTT
Found at i:5058770 original size:84 final size:83
Alignment explanation
Indices: 5058599--5058759 Score: 202
Period size: 83 Copynumber: 1.9 Consensus size: 83
5058589 GTGAATTGTC
* * *
5058599 AAAAGAAAACCTAGAATTTTAAAGACAAAAAAATGTCTTCTTCTGCATTGATTCTTATATCAACC
1 AAAAGAAAACCTAGAATTTTAAAGACAAAAAAATCTCTTATTCTGCATTGATTCTTATATAAACC
**
5058664 ATGATTTTTGAGAACTGAA
66 ATGATTTTCCAGAAC-GAA
5058683 AAAAGAAAACCT-GAAATTTTAAAGA-AAAAAAATCTCTTATTCT-CAATTGATTCTTATATAAA
1 AAAAGAAAACCTAG-AATTTTAAAGACAAAAAAATCTCTTATTCTGC-ATTGATTCTTATAT---
5058745 AAACCATGATTTTCC
61 AAACCATGATTTTCC
5058760 CAGACCAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
82 1 0.01
83 31 0.46
84 23 0.34
86 12 0.18
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.32
Consensus pattern (83 bp):
AAAAGAAAACCTAGAATTTTAAAGACAAAAAAATCTCTTATTCTGCATTGATTCTTATATAAACC
ATGATTTTCCAGAACGAA
Found at i:5059495 original size:87 final size:87
Alignment explanation
Indices: 5059404--5059564 Score: 243
Period size: 87 Copynumber: 1.9 Consensus size: 87
5059394 AAAAACACAA
* * *
5059404 GTTTTTGAGAAAAGAATCAATGGAAAAGAAGACA-TTTTTTTGTCTTTAAAATTATGGGTTTTCT
1 GTTTTTAAGAAAAGAATCAATGGAAAAGAAGACATTTTTTTTGTCTTTAAAAATATAGGTTTT-T
5059468 TTTTTCAGTTCTCAAAAATCATG
65 TTTTTCAGTTCTCAAAAATCATG
* * * *
5059491 GTTTTTAAGAAAAGAATCAATTGAGAAGAAGGCATTTTTTTTGTCTTTAAAAATCTAGGTTTTTT
1 GTTTTTAAGAAAAGAATCAATGGAAAAGAAGACATTTTTTTTGTCTTTAAAAATATAGGTTTTTT
5059556 TTTTCAGTT
66 TTTTCAGTT
5059565 TACTGGGTTC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
87 41 0.62
88 25 0.38
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.43
Consensus pattern (87 bp):
GTTTTTAAGAAAAGAATCAATGGAAAAGAAGACATTTTTTTTGTCTTTAAAAATATAGGTTTTTT
TTTTCAGTTCTCAAAAATCATG
Found at i:5059594 original size:88 final size:88
Alignment explanation
Indices: 5059404--5059635 Score: 256
Period size: 88 Copynumber: 2.6 Consensus size: 88
5059394 AAAAACACAA
* * * * *
5059404 GTTTTTGAGAAAAGAATCAATGGAAAAGAAGACA-TTTTTTTGTCTTTAAAATTATGGGTTTTCT
1 GTTTTTGAGAAAAGAATCAATGGAGAAGAAGGCATTTTTTTTGTCTTTAAAAATCTAGGTTTTCT
5059468 TTTTTCAGTTCTCAAAAATCATG
66 TTTTTCAGTTCTCAAAAATCATG
* *
5059491 GTTTTTAAGAAAAGAATCAATTGAGAAGAAGGCATTTTTTTTGTCTTTAAAAATCTAGGTTTT-T
1 GTTTTTGAGAAAAGAATCAATGGAGAAGAAGGCATTTTTTTTGTCTTTAAAAATCTAGGTTTTCT
*****
5059555 TTTTTCAGTT-TACTGGGTTCAATG
66 TTTTTCAGTTCT-CAAAAATC-ATG
* * *
5059579 GTTTTTGAGATAAGAATCAATGGAGAATAAGG-TTTGAATTTTTTGTCTTTAAAAATC
1 GTTTTTGAGAAAAGAATCAATGGAGAAGAAGGCATT---TTTTTTGTCTTTAAAAATC
5059636 AGATGGAGGG
Statistics
Matches: 122, Mismatches: 17, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
86 1 0.01
87 46 0.38
88 56 0.46
90 19 0.16
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (88 bp):
GTTTTTGAGAAAAGAATCAATGGAGAAGAAGGCATTTTTTTTGTCTTTAAAAATCTAGGTTTTCT
TTTTTCAGTTCTCAAAAATCATG
Found at i:5062137 original size:19 final size:21
Alignment explanation
Indices: 5062084--5062138 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
5062074 GTGGAAATCT
* *
5062084 CACACACCCGTGTGGCTAAGG
1 CACACAGCCGTGTGTCTAAGG
*
5062105 GACACAGCCGTGTGTCTAAGG
1 CACACAGCCGTGTGTCTAAGG
5062126 CACAC-GCC-TGTGT
1 CACACAGCCGTGTGT
5062139 AAAAATTGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 5 0.17
20 3 0.10
21 22 0.73
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (21 bp):
CACACAGCCGTGTGTCTAAGG
Found at i:5075813 original size:23 final size:25
Alignment explanation
Indices: 5075787--5075832 Score: 78
Period size: 23 Copynumber: 1.9 Consensus size: 25
5075777 GTGGAGTGAA
5075787 AATTCTCT-TTGAG-TTTCTTTAAG
1 AATTCTCTCTTGAGTTTTCTTTAAG
5075810 AATTCTCTCTTGAGTTTTCTTTA
1 AATTCTCTCTTGAGTTTTCTTTA
5075833 GAAGTAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 8 0.38
24 5 0.24
25 8 0.38
ACGTcount: A:0.20, C:0.15, G:0.11, T:0.54
Consensus pattern (25 bp):
AATTCTCTCTTGAGTTTTCTTTAAG
Found at i:5077547 original size:7 final size:7
Alignment explanation
Indices: 5077535--5077565 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
5077525 GTGAGCATTT
5077535 ATATGAG
1 ATATGAG
5077542 ATATGAG
1 ATATGAG
5077549 ATATGAG
1 ATATGAG
5077556 ATATGAG
1 ATATGAG
5077563 ATA
1 ATA
5077566 GAGGGGGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.26, T:0.29
Consensus pattern (7 bp):
ATATGAG
Found at i:5084146 original size:25 final size:25
Alignment explanation
Indices: 5084107--5084200 Score: 86
Period size: 25 Copynumber: 3.8 Consensus size: 25
5084097 TTTCCATATA
*
5084107 TGGCTCGTAATAAGCTTCCCGATAAT
1 TGGCTC-TCATAAGCTTCCCGATAAT
*
5084133 TGGCTCTCATAAGCTTCCTGATTAA-
1 TGGCTCTCATAAGCTTCCCGA-TAAT
* *
5084158 TGGATCTC-TGGAGCTTCCCGAT-AT
1 TGGCTCTCAT-AAGCTTCCCGATAAT
* *
5084182 TGGCTCACATGAGCTTCCC
1 TGGCTCTCATAAGCTTCCC
5084201 TATTATGACC
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
23 1 0.02
24 17 0.30
25 30 0.53
26 9 0.16
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (25 bp):
TGGCTCTCATAAGCTTCCCGATAAT
Found at i:5084222 original size:49 final size:50
Alignment explanation
Indices: 5084119--5084213 Score: 126
Period size: 49 Copynumber: 2.0 Consensus size: 50
5084109 GCTCGTAATA
* * *
5084119 AGCTTCCCGATAATTGGCTCTCATAAGCTT-CCTGATTAATGGATCTCTGG
1 AGCTTCCCGAT-ATTGGCTCACATGAGCTTCCCTGATTAATGGACCTCTGG
5084169 AGCTTCCCGATATTGGCTCACATGAGCTTCCCT-ATT-AT-GACCTCT
1 AGCTTCCCGATATTGGCTCACATGAGCTTCCCTGATTAATGGACCTCT
5084214 TATGAGCTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
47 6 0.15
48 2 0.05
49 19 0.46
50 14 0.34
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (50 bp):
AGCTTCCCGATATTGGCTCACATGAGCTTCCCTGATTAATGGACCTCTGG
Found at i:5087021 original size:54 final size:54
Alignment explanation
Indices: 5086939--5087059 Score: 215
Period size: 54 Copynumber: 2.2 Consensus size: 54
5086929 TCCCTCTCTT
* *
5086939 CTAATTCAACTAGAAGATTGATTTTTCTATTAAATAAGTATTGTTTGTGTTCTC
1 CTAATTCAACTAGAAGATTGATTTTTCTATTAAATAAGTATTATTTGTATTCTC
*
5086993 CTAATTCAACTAGAAGATTGATTTTTCTATTAAATAAGTATTATTTGTATTCTT
1 CTAATTCAACTAGAAGATTGATTTTTCTATTAAATAAGTATTATTTGTATTCTC
5087047 CTAATTCAACTAG
1 CTAATTCAACTAG
5087060 GGTTCCTCTA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (54 bp):
CTAATTCAACTAGAAGATTGATTTTTCTATTAAATAAGTATTATTTGTATTCTC
Found at i:5087230 original size:2 final size:2
Alignment explanation
Indices: 5087223--5087251 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
5087213 AGTTTCTATA
5087223 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
5087252 TTTACTTTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:5093897 original size:20 final size:20
Alignment explanation
Indices: 5093874--5093936 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
5093864 TATTGAAGTA
*
5093874 CAATCAGGGGCACGTATGTG
1 CAATCAGGGGCACATATGTG
* * * *
5093894 CAATTAGGGGTACCA-AAGTA
1 CAATCAGGGGCA-CATATGTG
*
5093914 CAATCAGGGGCATATATGTG
1 CAATCAGGGGCACATATGTG
5093934 CAA
1 CAA
5093937 ACATTCAATA
Statistics
Matches: 31, Mismatches: 10, Indels: 4
0.69 0.22 0.09
Matches are distributed among these distances:
19 1 0.03
20 29 0.94
21 1 0.03
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (20 bp):
CAATCAGGGGCACATATGTG
Found at i:5098239 original size:37 final size:37
Alignment explanation
Indices: 5098163--5098241 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
5098153 TTATTACGAA
* * * *
5098163 GTCTTACCCGGACATAATCTCCACACGAAGTTATAGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCACAGG
* *
5098200 GTCTTACCCGGACAAAATCCCCACACGTAGTCACCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCACAGG
5098237 GTCTT
1 GTCTT
5098242 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCACAGG
Found at i:5105638 original size:20 final size:19
Alignment explanation
Indices: 5105615--5105750 Score: 74
Period size: 20 Copynumber: 6.8 Consensus size: 19
5105605 GGGTATCGAA
5105615 GTACAAACAGGGGCACACAT
1 GTACAAACAGGGGCAC-CAT
* * *
5105635 GTACAAACAAGGGTACCGAA
1 GTACAAACAGGGGCACC-AT
* *
5105655 GAACAAACAGGGGCACTTAT
1 GTACAAACAGGGGCAC-CAT
* * * * *
5105675 GTGCGAACAGGGGTACTGAA
1 GTACAAACAGGGGCAC-CAT
*
5105695 GTACAAACAGGGGCACGTAT
1 GTACAAACAGGGGCAC-CAT
* * * *
5105715 GTGCAATCAGGGGTACCGAA
1 GTACAAACAGGGGCACC-AT
*
5105735 GTACAATCAGGGGCAC
1 GTACAAACAGGGGCAC
5105751 ATATGTGCAA
Statistics
Matches: 86, Mismatches: 27, Indels: 6
0.72 0.23 0.05
Matches are distributed among these distances:
19 1 0.01
20 85 0.99
ACGTcount: A:0.36, C:0.21, G:0.30, T:0.13
Consensus pattern (19 bp):
GTACAAACAGGGGCACCAT
Found at i:5105655 original size:40 final size:40
Alignment explanation
Indices: 5105603--5105763 Score: 223
Period size: 40 Copynumber: 4.0 Consensus size: 40
5105593 AAATGCGTTT
* * *
5105603 AGGGGTATCGAAGTACAAACAGGGGCACACATGTACAAAC
1 AGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAAAC
* * * *
5105643 AAGGGTACCGAAGAACAAACAGGGGCACTTATGTGCGAAC
1 AGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAAAC
* * *
5105683 AGGGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATC
1 AGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAAAC
*
5105723 AGGGGTACCGAAGTACAATCAGGGGCACATATGTGCAAAC
1 AGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAAAC
5105763 A
1 A
5105764 TTCAATAATT
Statistics
Matches: 104, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.37, C:0.19, G:0.30, T:0.14
Consensus pattern (40 bp):
AGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAAAC
Found at i:5108848 original size:16 final size:16
Alignment explanation
Indices: 5108827--5108873 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 16
5108817 TCTATGATGT
*
5108827 TTGATTGTGTTAATGC
1 TTGATTGTGTTAACGC
5108843 TTGATTGTGTTAACGC
1 TTGATTGTGTTAACGC
5108859 TTGATTGTGTTAACG
1 TTGATTGTGTTAACG
5108874 TGAGTGACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.19, C:0.09, G:0.26, T:0.47
Consensus pattern (16 bp):
TTGATTGTGTTAACGC
Found at i:5114678 original size:40 final size:40
Alignment explanation
Indices: 5114589--5114697 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
5114579 CGTGATTCAG
* **
5114589 GTGGATCAGCTCTTATGATCTTCTG-TTGGCGTGTTTCTA
1 GTGGATCAGCTCTTATGAGCTTCTGTTTGGCGCATTTCTA
* *
5114628 GTGAACCAGCTCTTATGAGCTTCTGTTTGGCGCATTTCTA
1 GTGGATCAGCTCTTATGAGCTTCTGTTTGGCGCATTTCTA
* *
5114668 TTGGATCAGCTCTTATGAGCTTCTATTTGG
1 GTGGATCAGCTCTTATGAGCTTCTGTTTGG
5114698 TGTGTTCGAT
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 22 0.37
40 38 0.63
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.41
Consensus pattern (40 bp):
GTGGATCAGCTCTTATGAGCTTCTGTTTGGCGCATTTCTA
Found at i:5115576 original size:103 final size:103
Alignment explanation
Indices: 5115397--5115709 Score: 599
Period size: 103 Copynumber: 3.0 Consensus size: 103
5115387 GTATAATGTT
* *
5115397 TATAAAATACTATTAAGTTAGGAATGAAAAATATATATAATGTTGATAGACTTACTCATTTATGA
1 TATAAAATACTATTAAGTTAGGAATGAAAAATATATATGATGTTAATAGACTTACTCATTTATGA
5115462 GTTGATGGTTATGTAGTTGATAAATCTTGAGGTATTGG
66 GTTGATGGTTATGTAGTTGATAAATCTTGAGGTATTGG
5115500 TATAAAATACTATTAAGTTAGGAATGAAAAATATATATGATGTTAATAGACTTACTCATTTATGA
1 TATAAAATACTATTAAGTTAGGAATGAAAAATATATATGATGTTAATAGACTTACTCATTTATGA
5115565 GTTGATGGTTATGTAGTTGATAAATCTTGAGGTATTGG
66 GTTGATGGTTATGTAGTTGATAAATCTTGAGGTATTGG
5115603 TATAAAATACTATTAAGTTAGGAATGAAAAATATATATGATGTTAATAGACTTACTCATTTATGA
1 TATAAAATACTATTAAGTTAGGAATGAAAAATATATATGATGTTAATAGACTTACTCATTTATGA
*
5115668 GTTGATGGTTATGTAGTTGATAAATCTTGAGGTATTAG
66 GTTGATGGTTATGTAGTTGATAAATCTTGAGGTATTGG
5115706 TATA
1 TATA
5115710 GGTTTATATT
Statistics
Matches: 207, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 207 1.00
ACGTcount: A:0.37, C:0.05, G:0.19, T:0.39
Consensus pattern (103 bp):
TATAAAATACTATTAAGTTAGGAATGAAAAATATATATGATGTTAATAGACTTACTCATTTATGA
GTTGATGGTTATGTAGTTGATAAATCTTGAGGTATTGG
Found at i:5118676 original size:25 final size:25
Alignment explanation
Indices: 5118648--5118708 Score: 113
Period size: 25 Copynumber: 2.4 Consensus size: 25
5118638 TTGTACACTC
*
5118648 TACTGAGAACACTGTAGATAGTGTA
1 TACTGAAAACACTGTAGATAGTGTA
5118673 TACTGAAAACACTGTAGATAGTGTA
1 TACTGAAAACACTGTAGATAGTGTA
5118698 TACTGAAAACA
1 TACTGAAAACA
5118709 GTAGCGAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (25 bp):
TACTGAAAACACTGTAGATAGTGTA
Found at i:5138533 original size:34 final size:34
Alignment explanation
Indices: 5138490--5138567 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
5138480 AAATGATCCG
* *
5138490 TGTAAATCATGTATTTTATGTAGCTTATAAACCA
1 TGTAAATCATGTATTTCATGTAACTTATAAACCA
* * *
5138524 TGTAAATCATGTATTTCATGTAATTTATAATCCT
1 TGTAAATCATGTATTTCATGTAACTTATAAACCA
5138558 TGTAAATCAT
1 TGTAAATCAT
5138568 ATAACTCTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.44
Consensus pattern (34 bp):
TGTAAATCATGTATTTCATGTAACTTATAAACCA
Found at i:5138795 original size:23 final size:23
Alignment explanation
Indices: 5138742--5138822 Score: 119
Period size: 23 Copynumber: 3.6 Consensus size: 23
5138732 CTCAGCTGGT
** *
5138742 AAACGGTAAGCTCTATCGAGCT-
1 AAACGGTAAGCTCCGTAGAGCTA
*
5138764 GAACGGTAAGCTCCGTAGAGCTA
1 AAACGGTAAGCTCCGTAGAGCTA
5138787 AAACGGTAAGCTCCGTAGAGCTA
1 AAACGGTAAGCTCCGTAGAGCTA
5138810 AAACGGTAAGCTC
1 AAACGGTAAGCTC
5138823 ATAAGAACTG
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
22 18 0.34
23 35 0.66
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (23 bp):
AAACGGTAAGCTCCGTAGAGCTA
Found at i:5140504 original size:27 final size:27
Alignment explanation
Indices: 5140459--5140561 Score: 136
Period size: 27 Copynumber: 3.8 Consensus size: 27
5140449 AGTACATTCA
* * *
5140459 CCACAAAGGCATTTC-TTTCAGAGTTAA
1 CCACAAAGGC-TTCCTTTTCAAAGTTAG
*
5140486 CCACAAGGGCTTCCTTTTCAAAGTTAG
1 CCACAAAGGCTTCCTTTTCAAAGTTAG
*
5140513 CCACAAAGGCTTCCTTTTCATAGTTAG
1 CCACAAAGGCTTCCTTTTCAAAGTTAG
*
5140540 CCACAAAGGCTTCCTCTTCAAA
1 CCACAAAGGCTTCCTTTTCAAA
5140562 CGCTTTTATG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 3 0.04
27 64 0.96
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (27 bp):
CCACAAAGGCTTCCTTTTCAAAGTTAG
Found at i:5143659 original size:12 final size:12
Alignment explanation
Indices: 5143642--5143667 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
5143632 TCAGGCATAC
5143642 CCTGATTCTATA
1 CCTGATTCTATA
5143654 CCTGATTCTATA
1 CCTGATTCTATA
5143666 CC
1 CC
5143668 ATACATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38
Consensus pattern (12 bp):
CCTGATTCTATA
Found at i:5150454 original size:27 final size:28
Alignment explanation
Indices: 5150415--5150505 Score: 98
Period size: 27 Copynumber: 3.4 Consensus size: 28
5150405 CATGCAGTAT
* *
5150415 CAGT-ACAGTGTGGGCC-TAGCCCGATA
1 CAGTAACAATGTGGGCCTTAGCCCAATA
*
5150441 CAGTAACAATGTGGGCCTTAGCCTAATA
1 CAGTAACAATGTGGGCCTTAGCCCAATA
* * *
5150469 CAGTAATAGTGT-GGCCTTAGCTCAATA
1 CAGTAACAATGTGGGCCTTAGCCCAATA
*
5150496 TAGTAACAAT
1 CAGTAACAAT
5150506 ATAGTGCCAT
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
26 4 0.08
27 31 0.58
28 18 0.34
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (28 bp):
CAGTAACAATGTGGGCCTTAGCCCAATA
Found at i:5150637 original size:26 final size:26
Alignment explanation
Indices: 5150608--5150662 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
5150598 AAGACACCAA
* * *
5150608 TATCGCAGCAAAGTTTCCAATAATAG
1 TATCGCAGCAAAGCTGCCAATAACAG
5150634 TATCGCAGCAAAGCTGCCAATAACAG
1 TATCGCAGCAAAGCTGCCAATAACAG
5150660 TAT
1 TAT
5150663 ATGTGGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAATAACAG
Found at i:5150935 original size:27 final size:26
Alignment explanation
Indices: 5150859--5150944 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 26
5150849 TATAATAGTT
* *
5150859 ATTTTACCCTATGGGGGTATTTTTGTC
1 ATTTTACCTTATGGGGGTA-TTTCGTC
*
5150886 ATTTTACCTTATGGAGGTATTTCGATC
1 ATTTTACCTTATGGGGGTATTTCG-TC
5150913 ATTTTACCTTATGGGGGTATTTCGGTC
1 ATTTTACCTTATGGGGGTATTTC-GTC
5150940 -TTTTA
1 ATTTTA
5150945 TTGACCCCTC
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
26 9 0.17
27 43 0.81
28 1 0.02
ACGTcount: A:0.17, C:0.14, G:0.21, T:0.48
Consensus pattern (26 bp):
ATTTTACCTTATGGGGGTATTTCGTC
Found at i:5158233 original size:27 final size:27
Alignment explanation
Indices: 5158203--5158315 Score: 79
Period size: 27 Copynumber: 4.2 Consensus size: 27
5158193 ATCTCCTAGA
*
5158203 GGTATAAT-AGTCATTTTACCCTATGTG
1 GGTAT-ATCAGTCATTTTACCCTATGGG
* *
5158230 GGTATTTCGGTCATTTTACCCTATGGG
1 GGTATATCAGTCATTTTACCCTATGGG
** * *
5158257 GGTAT-TTTGATAATTTTACCCTGTGGG
1 GGTATATCAG-TCATTTTACCCTATGGG
** * *
5158284 GGTAT-TTTGATAATTTTACCCTATGAG
1 GGTATATCAG-TCATTTTACCCTATGGG
5158311 GGTAT
1 GGTAT
5158316 TTTGGTCTTT
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 3 0.04
27 72 0.96
ACGTcount: A:0.21, C:0.13, G:0.23, T:0.42
Consensus pattern (27 bp):
GGTATATCAGTCATTTTACCCTATGGG
Found at i:5158316 original size:27 final size:27
Alignment explanation
Indices: 5158215--5158319 Score: 156
Period size: 27 Copynumber: 3.9 Consensus size: 27
5158205 TATAATAGTC
* * * *
5158215 ATTTTACCCTATGTGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTTGATA
5158242 ATTTTACCCTATGGGGGTATTTTGATA
1 ATTTTACCCTATGGGGGTATTTTGATA
*
5158269 ATTTTACCCTGTGGGGGTATTTTGATA
1 ATTTTACCCTATGGGGGTATTTTGATA
*
5158296 ATTTTACCCTATGAGGGTATTTTG
1 ATTTTACCCTATGGGGGTATTTTG
5158320 GTCTTTTAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.19, C:0.13, G:0.23, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTTGATA
Found at i:5169697 original size:7 final size:7
Alignment explanation
Indices: 5169671--5169741 Score: 51
Period size: 7 Copynumber: 10.4 Consensus size: 7
5169661 TGAGAGCTAA
*
5169671 GAGAGTT
1 GAGAGAT
5169678 GAGAGA-
1 GAGAGAT
5169684 GAG-GAT
1 GAGAGAT
5169690 GAGAGAT
1 GAGAGAT
5169697 GAGAGGGAT
1 GAGA--GAT
*
5169706 GAGGGAT
1 GAGAGAT
*
5169713 GAGGGAT
1 GAGAGAT
*
5169720 GAGGGAT
1 GAGAGAT
5169727 GA-AG-T
1 GAGAGAT
*
5169732 GAGAAAT
1 GAGAGAT
5169739 GAG
1 GAG
5169742 CTCTTATTTA
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
5 5 0.09
6 8 0.15
7 35 0.65
9 6 0.11
ACGTcount: A:0.37, C:0.00, G:0.49, T:0.14
Consensus pattern (7 bp):
GAGAGAT
Done.