Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 182 of 187
Found at i:55636514 original size:15 final size:16
Alignment explanation
Indices: 55636494--55636527 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
55636484 TTAAATTAAA
*
55636494 ATTTTAAAT-TTATTT
1 ATTTTAAATATTATAT
55636509 ATTTTAAATATTATAT
1 ATTTTAAATATTATAT
55636525 ATT
1 ATT
55636528 AATTATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTTTAAATATTATAT
Found at i:55639140 original size:24 final size:24
Alignment explanation
Indices: 55639112--55639159 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
55639102 AGCTTATGTA
55639112 ATAAAATAAAAATTTCTGAGAATT
1 ATAAAATAAAAATTTCTGAGAATT
55639136 ATAAAATAAAAATTTCTGAGAATT
1 ATAAAATAAAAATTTCTGAGAATT
55639160 TAGCGTCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.33
Consensus pattern (24 bp):
ATAAAATAAAAATTTCTGAGAATT
Found at i:55640373 original size:12 final size:12
Alignment explanation
Indices: 55640356--55640380 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
55640346 GATCAAACTG
55640356 ATAAAAATGTAA
1 ATAAAAATGTAA
55640368 ATAAAAATGTAA
1 ATAAAAATGTAA
55640380 A
1 A
55640381 CGTTAAAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (12 bp):
ATAAAAATGTAA
Found at i:55642677 original size:17 final size:17
Alignment explanation
Indices: 55642660--55642692 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
55642650 ATAATATTAT
55642660 TTTAA-TAAATTTAATA
1 TTTAATTAAATTTAATA
*
55642676 TTTAATTTAATTTAATA
1 TTTAATTAAATTTAATA
55642693 CTTATCTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTAATTAAATTTAATA
Found at i:55642721 original size:57 final size:57
Alignment explanation
Indices: 55642654--55642852 Score: 141
Period size: 68 Copynumber: 3.2 Consensus size: 57
55642644 CCCAAAATAA
* *
55642654 TATTATTTTAATAAATTTAATATTTAATTTAATTTAATACTTATCTTGATAGTATTT
1 TATTAATTTAATAAATTTAATATTAAATTTAATTTAATACTTATCTTGATAGTATTT
* *
55642711 TATTAATTTAATATCAAAGTGATTATCTTAATATTAAATTAAATTTAATATTTATCTT-ATAGAT
1 TATTAATTT-A-AT---A---A--AT-TTAATATTAAATTTAATTTAATACTTATCTTGATAG-T
55642775 AAATATT
54 --AT-TT
* * * * * *
55642782 CTATTACTTTAATAGA-TTAATATTAAATTTAATCTAATACTTTTCTTGATAAGAATTA
1 -TATTAATTTAATAAATTTAATATTAAATTTAATTTAATACTTATCTTGAT-AGTATTT
55642840 TATTAATTTAATA
1 TATTAATTTAATA
55642853 TTAAAGTGAT
Statistics
Matches: 111, Mismatches: 13, Indels: 36
0.69 0.08 0.22
Matches are distributed among these distances:
57 20 0.18
58 2 0.02
59 4 0.04
60 27 0.24
61 2 0.02
62 4 0.04
65 1 0.01
67 7 0.06
68 29 0.26
70 4 0.04
71 3 0.03
72 8 0.07
ACGTcount: A:0.41, C:0.05, G:0.04, T:0.50
Consensus pattern (57 bp):
TATTAATTTAATAAATTTAATATTAAATTTAATTTAATACTTATCTTGATAGTATTT
Found at i:55653400 original size:29 final size:29
Alignment explanation
Indices: 55653358--55653420 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
55653348 ATCAACAATT
55653358 GAAAAGGGATAGCTTCGGCTATCGAATAC
1 GAAAAGGGATAGCTTCGGCTATCGAATAC
* * *
55653387 GAAAAGGGATAGCTTCGGTTATCGATTAT
1 GAAAAGGGATAGCTTCGGCTATCGAATAC
55653416 GAAAA
1 GAAAA
55653421 TTGATGGTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.24
Consensus pattern (29 bp):
GAAAAGGGATAGCTTCGGCTATCGAATAC
Found at i:55653458 original size:30 final size:30
Alignment explanation
Indices: 55653424--55653482 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
55653414 ATGAAAATTG
* *
55653424 ATGGTGAAGGCCATCGAACTATGAAAAGGA
1 ATGGTGAAGACCATCAAACTATGAAAAGGA
* *
55653454 ATGGTGACGACCATCAAATTATGAAAAGG
1 ATGGTGAAGACCATCAAACTATGAAAAGG
55653483 GATAGCTTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.19
Consensus pattern (30 bp):
ATGGTGAAGACCATCAAACTATGAAAAGGA
Found at i:55654944 original size:23 final size:23
Alignment explanation
Indices: 55654909--55654952 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
55654899 AATGGACAAT
55654909 ATGTGTGTTTTGA-ATTGATTTTA
1 ATGTGTGTTTTGATA-TGATTTTA
55654932 ATGTGT-TTATTGATATGATTT
1 ATGTGTGTT-TTGATATGATTT
55654953 GAAAAGTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 2 0.11
23 16 0.84
24 1 0.05
ACGTcount: A:0.23, C:0.00, G:0.20, T:0.57
Consensus pattern (23 bp):
ATGTGTGTTTTGATATGATTTTA
Found at i:55656835 original size:8 final size:8
Alignment explanation
Indices: 55656822--55656861 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
55656812 TAGAATAAAT
55656822 TAAAAAAA
1 TAAAAAAA
55656830 TAAAAAAA
1 TAAAAAAA
*
55656838 TAAAAAAC
1 TAAAAAAA
*
55656846 TAATAAAA
1 TAAAAAAA
55656854 TAATAAAA
1 TAA-AAAA
55656862 GTTTCCTATG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
8 24 0.89
9 3 0.11
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (8 bp):
TAAAAAAA
Found at i:55660660 original size:21 final size:21
Alignment explanation
Indices: 55660635--55660677 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
55660625 TGGGACTTAA
55660635 AAGTTAAAA-GTAAAGTAAATC
1 AAGTTAAAATGTAAA-TAAATC
*
55660656 AAGTTAAAATTTAAATAAATC
1 AAGTTAAAATGTAAATAAATC
55660677 A
1 A
55660678 TGCAATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.58, C:0.05, G:0.09, T:0.28
Consensus pattern (21 bp):
AAGTTAAAATGTAAATAAATC
Found at i:55661390 original size:10 final size:10
Alignment explanation
Indices: 55661377--55661415 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
55661367 AGGTTAAAAG
55661377 ACTAAAATTA
1 ACTAAAATTA
55661387 ACTAAAATTA
1 ACTAAAATTA
*
55661397 ACTAAAA-AA
1 ACTAAAATTA
55661406 ACTAAAATTA
1 ACTAAAATTA
55661416 TAAAATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 8 0.31
10 18 0.69
ACGTcount: A:0.64, C:0.10, G:0.00, T:0.26
Consensus pattern (10 bp):
ACTAAAATTA
Found at i:55664883 original size:79 final size:79
Alignment explanation
Indices: 55664748--55664906 Score: 300
Period size: 79 Copynumber: 2.0 Consensus size: 79
55664738 TGAAAAGATC
*
55664748 GTCCTATTTTTATGATGCTTTTATTGGTCTTGCATTGTATCTTTTACACTTCACATTCAAGCTAA
1 GTCCTATTTTTATGATGCTTTTATTGCTCTTGCATTGTATCTTTTACACTTCACATTCAAGCTAA
55664813 AAATGAATATGAAA
66 AAATGAATATGAAA
*
55664827 GTCCTATTTTTATGATGCTTTTATTGCTCTTGCATTGTATCTTTTACACTTTACATTCAAGCTAA
1 GTCCTATTTTTATGATGCTTTTATTGCTCTTGCATTGTATCTTTTACACTTCACATTCAAGCTAA
55664892 AAATGAATATGAAA
66 AAATGAATATGAAA
55664906 G
1 G
55664907 AGACATCAAT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.43
Consensus pattern (79 bp):
GTCCTATTTTTATGATGCTTTTATTGCTCTTGCATTGTATCTTTTACACTTCACATTCAAGCTAA
AAATGAATATGAAA
Found at i:55666940 original size:19 final size:19
Alignment explanation
Indices: 55666904--55666945 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
55666894 CTAAAATATG
*
55666904 TTAAGTAATTAAGATTT-A
1 TTAAGTAATTAACATTTAA
*
55666922 TTAAGTTAATTAACCTTTAA
1 TTAAG-TAATTAACATTTAA
55666942 TTAA
1 TTAA
55666946 CATATAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 5 0.25
19 10 0.50
20 5 0.25
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (19 bp):
TTAAGTAATTAACATTTAA
Found at i:55671866 original size:12 final size:12
Alignment explanation
Indices: 55671847--55671878 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
55671837 GGACACATAG
55671847 CCGTGTCCCATC
1 CCGTGTCCCATC
*
55671859 CTGTGTCCCATC
1 CCGTGTCCCATC
55671871 CCGTGTCC
1 CCGTGTCC
55671879 TCACACATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.47, G:0.19, T:0.28
Consensus pattern (12 bp):
CCGTGTCCCATC
Found at i:55685402 original size:23 final size:23
Alignment explanation
Indices: 55685376--55685433 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
55685366 AAACATTGTT
* *
55685376 AATTGATA-TGTTAAAGTGCTGCA
1 AATTGA-AGTGTTAAAGTACTACA
55685399 AATTGAAGTGTTAAAGTACTACA
1 AATTGAAGTGTTAAAGTACTACA
*
55685422 AATAGAAGTGTT
1 AATTGAAGTGTT
55685434 TAGTTGCTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 1 0.03
23 30 0.97
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.33
Consensus pattern (23 bp):
AATTGAAGTGTTAAAGTACTACA
Found at i:55685509 original size:23 final size:22
Alignment explanation
Indices: 55685463--55685606 Score: 141
Period size: 23 Copynumber: 6.4 Consensus size: 22
55685453 TGTTTTATCA
*
55685463 TTGT-AATTGAGGTGTATAAATG
1 TTGTAAATTGAAGTGT-TAAATG
*
55685485 TTGTTAATT-AAGATGTTAAAGTG
1 TTGTAAATTGAAG-TGTTAAA-TG
* *
55685508 TTGCAAATTGAAGTGTTTAAATA
1 TTGTAAATTGAAGTG-TTAAATG
55685531 TTGTAAATTGAAGTGTTAAAGTG
1 TTGTAAATTGAAGTGTTAAA-TG
55685554 TTGTAAATTGAAGTGTTTAAATG
1 TTGTAAATTGAAGTG-TTAAATG
* * *
55685577 TTGTGAATTAAAGTATTAAAGTG
1 TTGTAAATTGAAGTGTTAAA-TG
55685600 TT-TAAAT
1 TTGTAAAT
55685607 GTTGTATATT
Statistics
Matches: 104, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
22 24 0.23
23 67 0.64
24 13 0.12
ACGTcount: A:0.36, C:0.01, G:0.22, T:0.42
Consensus pattern (22 bp):
TTGTAAATTGAAGTGTTAAATG
Found at i:55685517 original size:114 final size:115
Alignment explanation
Indices: 55685297--55685524 Score: 334
Period size: 114 Copynumber: 2.0 Consensus size: 115
55685287 AGCCCTATTT
* * * * *
55685297 AAGTACTGCAATTTGAAGTGTTTAGTTGTTGGAAATTAAGATGTTTTATTTCTGTAAATTGAGGT
1 AAGTACTACAAATAGAAGTGTTTAGTTGCTGGAAATTAAGATGTTTTATATCTGTAAATTGAGGT
* *
55685362 GTATAAACATTGTTAATTGATATGTTAAAGTGCTGCAAATTGAAGTGTTA
66 GTATAAACATTGTTAATTAAGATGTTAAAGTGCTGCAAATTGAAGTGTTA
*
55685412 AAGTACTACAAATAGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCAT-TGT-AATTGAGG
1 AAGTACTACAAATAGAAGTGTTTAGTTGCTGGAAATTAAGATGTTTTAT-ATCTGTAAATTGAGG
** *
55685475 TGTATAAATGTTGTTAATTAAGATGTTAAAGTGTTGCAAATTGAAGTGTT
65 TGTATAAACATTGTTAATTAAGATGTTAAAGTGCTGCAAATTGAAGTGTT
55685525 TAAATATTGT
Statistics
Matches: 101, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
114 53 0.52
115 47 0.47
116 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.22, T:0.40
Consensus pattern (115 bp):
AAGTACTACAAATAGAAGTGTTTAGTTGCTGGAAATTAAGATGTTTTATATCTGTAAATTGAGGT
GTATAAACATTGTTAATTAAGATGTTAAAGTGCTGCAAATTGAAGTGTTA
Found at i:55685529 original size:46 final size:46
Alignment explanation
Indices: 55685467--55685601 Score: 175
Period size: 46 Copynumber: 2.9 Consensus size: 46
55685457 TTATCATTGT
* * *
55685467 AATTGAGGTGTATAAATGTTGTTAATTAAGATGTTAAAGTGTTGCA
1 AATTGAAGTGTTTAAATGTTGTAAATTAAGATGTTAAAGTGTTGCA
* *
55685513 AATTGAAGTGTTTAAATATTGTAAATTGAAG-TGTTAAAGTGTTGTA
1 AATTGAAGTGTTTAAATGTTGTAAATT-AAGATGTTAAAGTGTTGCA
* *
55685559 AATTGAAGTGTTTAAATGTTGTGAATTAA-AGTATTAAAGTGTT
1 AATTGAAGTGTTTAAATGTTGTAAATTAAGA-TGTTAAAGTGTT
55685602 TAAATGTTGT
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
45 2 0.03
46 73 0.94
47 3 0.04
ACGTcount: A:0.36, C:0.01, G:0.22, T:0.41
Consensus pattern (46 bp):
AATTGAAGTGTTTAAATGTTGTAAATTAAGATGTTAAAGTGTTGCA
Found at i:55685760 original size:23 final size:23
Alignment explanation
Indices: 55685705--55685761 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
55685695 AAATGTTGTT
* *
55685705 AATTGGGATGTTAAAGTGTTGTA
1 AATTGGGGTGTTAAAGTGTTGCA
** * *
55685728 TGTTGAGGTGTTTAAGTGTTGCA
1 AATTGGGGTGTTAAAGTGTTGCA
55685751 AATTGGGGTGT
1 AATTGGGGTGT
55685762 ACAAACGAGT
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.23, C:0.02, G:0.35, T:0.40
Consensus pattern (23 bp):
AATTGGGGTGTTAAAGTGTTGCA
Found at i:55686655 original size:5 final size:5
Alignment explanation
Indices: 55686645--55686675 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
55686635 TGAACCTTTG
55686645 TTTAT TTTAT TTTAT TTTAT TTTA- TTTAT TT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TT
55686676 CCTTTTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:55689897 original size:15 final size:16
Alignment explanation
Indices: 55689877--55689909 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
55689867 TAAGTAAATG
55689877 AAATGGAAAG-TAAGT
1 AAATGGAAAGATAAGT
*
55689892 AAATGGAATGATAAGT
1 AAATGGAAAGATAAGT
55689908 AA
1 AA
55689910 GTAAATGGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (16 bp):
AAATGGAAAGATAAGT
Found at i:55689917 original size:20 final size:20
Alignment explanation
Indices: 55689867--55689918 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
55689857 AAGCTTGTGC
*
55689867 TAAGTAAATGAAATGGAAAG
1 TAAGTAAATGGAATGGAAAG
55689887 TAAGTAAATGGAAT-GATAAG
1 TAAGTAAATGGAATGGA-AAG
55689907 TAAGTAAATGGA
1 TAAGTAAATGGA
55689919 GTGGTTCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 2 0.07
20 28 0.93
ACGTcount: A:0.52, C:0.00, G:0.25, T:0.23
Consensus pattern (20 bp):
TAAGTAAATGGAATGGAAAG
Found at i:55691639 original size:40 final size:39
Alignment explanation
Indices: 55691608--55691817 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
55691598 GGACTAAGAT
* *
55691608 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
55691648 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
55691688 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
55691728 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
55691768 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
55691807 CCGAAGGCATT
1 CCGAAGGCATT
55691818 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:55691771 original size:120 final size:120
Alignment explanation
Indices: 55691555--55691817 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
55691545 TTGAATGCTG
* *
55691555 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
55691619 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
55691675 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
55691738 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
55691794 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
55691818 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:55691837 original size:79 final size:80
Alignment explanation
Indices: 55691608--55691852 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
55691598 GGACTAAGAT
* * * * * * * ** *
55691608 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
55691671 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
55691688 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
55691753 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
55691768 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
55691832 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
55691846 CCGAAGG
1 CCGAAGG
55691853 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:55695453 original size:20 final size:20
Alignment explanation
Indices: 55695430--55695535 Score: 90
Period size: 20 Copynumber: 5.3 Consensus size: 20
55695420 GGGCGCTAAA
*
55695430 GTGCAATCAGGGGCACGAGT
1 GTGCAATCAGGGGCACGAAT
* * *
55695450 GTGCAAACAGGGGTACCAGA-
1 GTGCAATCAGGGGCACGA-AT
* *
55695470 GTGTATTCAGGGGCACGAAT
1 GTGCAATCAGGGGCACGAAT
* *
55695490 GTGCTATCAGGGGCATC-AAA
1 GTGCAATCAGGGGCA-CGAAT
* *
55695510 GTGCATTCAGGGGCATGAAT
1 GTGCAATCAGGGGCACGAAT
55695530 GTGCAA
1 GTGCAA
55695536 ATAGGGACAC
Statistics
Matches: 64, Mismatches: 18, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
19 1 0.02
20 62 0.97
21 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.35, T:0.19
Consensus pattern (20 bp):
GTGCAATCAGGGGCACGAAT
Found at i:55695480 original size:40 final size:40
Alignment explanation
Indices: 55695427--55695552 Score: 153
Period size: 40 Copynumber: 3.1 Consensus size: 40
55695417 TAAGGGCGCT
* * *
55695427 AAAGTGCAATCAGGGGCACGAGTGTGCAAACAGGGGTACC
1 AAAGTGCATTCAGGGGCACGAATGTGCAAACAGGGGCACC
* * * * *
55695467 AGAGTGTATTCAGGGGCACGAATGTGCTATCAGGGGCATC
1 AAAGTGCATTCAGGGGCACGAATGTGCAAACAGGGGCACC
* * *
55695507 AAAGTGCATTCAGGGGCATGAATGTGCAAATAGGGACACC
1 AAAGTGCATTCAGGGGCACGAATGTGCAAACAGGGGCACC
55695547 AAAGTG
1 AAAGTG
55695553 TTTATAGGGG
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.32, C:0.17, G:0.33, T:0.17
Consensus pattern (40 bp):
AAAGTGCATTCAGGGGCACGAATGTGCAAACAGGGGCACC
Found at i:55695562 original size:40 final size:40
Alignment explanation
Indices: 55695518--55695596 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
55695508 AAGTGCATTC
* *
55695518 AGGGGCAT-GAATGTGCAAATAGGGACACCAAAGTGTTTAT
1 AGGGGCATAG-ATGTGCAAACAAGGACACCAAAGTGTTTAT
* * *
55695558 AGGGGTATAGTTGTGCAAACAAGGACACCGAAGTGTTTA
1 AGGGGCATAGATGTGCAAACAAGGACACCAAAGTGTTTA
55695597 CAAGGGCACC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
40 32 0.97
41 1 0.03
ACGTcount: A:0.34, C:0.13, G:0.30, T:0.23
Consensus pattern (40 bp):
AGGGGCATAGATGTGCAAACAAGGACACCAAAGTGTTTAT
Found at i:55710395 original size:51 final size:51
Alignment explanation
Indices: 55710273--55710452 Score: 159
Period size: 51 Copynumber: 3.5 Consensus size: 51
55710263 AAAGTGATGG
* * * * * * * *
55710273 TCACGTGTGTAGTACTTTGTGCAGGCTACTACGTGTACCAGA-A-TGATAGG
1 TCACATGTGTAGTACTATGTGTAGGCTACTACGCGTATCGGATAGTGA-CGA
* * *
55710323 TCGCATCTGTAGTACTATGTGTAGGCTACTACGCGTA-CTGGATAGTTACGA
1 TCACATGTGTAGTACTATGTGTAGGCTACTACGCGTATC-GGATAGTGACGA
* * * * * *
55710374 TCACGTGTGTGGTACTATGTGTAGGCTACTACGTGTATCGGATGGTGATGG
1 TCACATGTGTAGTACTATGTGTAGGCTACTACGCGTATCGGATAGTGACGA
*
55710425 TCACATGTGTAGTACTATGTGCAGGCTA
1 TCACATGTGTAGTACTATGTGTAGGCTA
55710453 TTATGTGAAC
Statistics
Matches: 104, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
49 1 0.01
50 33 0.32
51 67 0.64
52 3 0.03
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGTAGGCTACTACGCGTATCGGATAGTGACGA
Found at i:55713552 original size:41 final size:41
Alignment explanation
Indices: 55713504--55713813 Score: 350
Period size: 41 Copynumber: 7.5 Consensus size: 41
55713494 GAGTGTAAAC
* * * *
55713504 AGGGGCACGTATGTGCTATTCAAGGGTATCGAAGTACAAAT
1 AGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAAT
* * * * *
55713545 AGTGGCACATATGTGGAATTTAGGGGTACCAAAGTACAAAA
1 AGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAAT
* *
55713586 AGGGGCACATATGTGCAATTTAGGGGTACCAAAGTACAAAT
1 AGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAAT
* * *
55713627 AGTGGCACGTATGTTCAATTTAGGGGTACCAAAGTACAAAT
1 AGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAAT
* * * * * *
55713668 AGTGGCACGTATGTTCAATTTAGGGATACTAAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAAT
* * * *
55713709 ATGGGGCATGTATGTGTAATTCAGGGGTACCGAAGTGCAAAT
1 A-GGGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAAT
* * *
55713751 AGGGGCACGTGTGTGCAATTCAGGGGTACCGAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAAT
55713792 AGGGGCACACGTATGTGCAATT
1 AGGGG--CACGTATGTGCAATT
55713814 TAGTGGTTAA
Statistics
Matches: 232, Mismatches: 34, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
41 187 0.81
42 31 0.13
43 14 0.06
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (41 bp):
AGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAAT
Found at i:55713829 original size:21 final size:21
Alignment explanation
Indices: 55713803--55713845 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
55713793 GGGGCACACG
55713803 TATGTGCAATTTAGTGGTTAA
1 TATGTGCAATTTAGTGGTTAA
55713824 TATGTGCAATTTAGTGGTTAA
1 TATGTGCAATTTAGTGGTTAA
55713845 T
1 T
55713846 TAACTATAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.44
Consensus pattern (21 bp):
TATGTGCAATTTAGTGGTTAA
Found at i:55715143 original size:27 final size:27
Alignment explanation
Indices: 55715070--55715150 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
55715060 ACCGAATGCA
* ** *
55715070 CCTCGATAGGTAAAATTACCAAAATAC
1 CCTCGATGGGTAAAATTACTGAAACAC
* *
55715097 CCTCAATGGGTAATATTACTGAAACAC
1 CCTCGATGGGTAAAATTACTGAAACAC
55715124 CCTCGATGGGTAAAATTACTGAAACAC
1 CCTCGATGGGTAAAATTACTGAAACAC
55715151 AAAATTACCG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.23
Consensus pattern (27 bp):
CCTCGATGGGTAAAATTACTGAAACAC
Found at i:55715412 original size:26 final size:26
Alignment explanation
Indices: 55715376--55715470 Score: 93
Period size: 26 Copynumber: 3.7 Consensus size: 26
55715366 TTGCCACAAA
* *
55715376 TACTGTTACTGGTAGCTTTGTTATGT
1 TACTGATACTGGTAGCTTTGTTGTGT
* * **
55715402 TACTGATACTGGTAGCTCTGCTGCAT
1 TACTGATACTGGTAGCTTTGTTGTGT
**
55715428 TACTTTTACTGGTAGCTTTGTTGTGT
1 TACTGATACTGGTAGCTTTGTTGTGT
*
55715454 TACT-ATTACTGGCAGCT
1 TACTGA-TACTGGTAGCT
55715471 CTGCTGCATT
Statistics
Matches: 54, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.17, C:0.17, G:0.22, T:0.44
Consensus pattern (26 bp):
TACTGATACTGGTAGCTTTGTTGTGT
Found at i:55715440 original size:52 final size:52
Alignment explanation
Indices: 55715376--55715491 Score: 189
Period size: 52 Copynumber: 2.2 Consensus size: 52
55715366 TTGCCACAAA
*
55715376 TACTGTTACTGGTAGCTTTGTTATGTTACTGA-TACTGGTAGCTCTGCTGCAT
1 TACTGTTACTGGTAGCTTTGTTATGTTACT-ATTACTGGCAGCTCTGCTGCAT
* *
55715428 TACTTTTACTGGTAGCTTTGTTGTGTTACTATTACTGGCAGCTCTGCTGCAT
1 TACTGTTACTGGTAGCTTTGTTATGTTACTATTACTGGCAGCTCTGCTGCAT
55715480 TACTGTTACTGG
1 TACTGTTACTGG
55715492 CATATTGCTG
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
51 1 0.02
52 58 0.98
ACGTcount: A:0.16, C:0.18, G:0.22, T:0.43
Consensus pattern (52 bp):
TACTGTTACTGGTAGCTTTGTTATGTTACTATTACTGGCAGCTCTGCTGCAT
Found at i:55715482 original size:26 final size:26
Alignment explanation
Indices: 55715408--55715493 Score: 100
Period size: 26 Copynumber: 3.3 Consensus size: 26
55715398 ATGTTACTGA
* *
55715408 TACTGGTAGCTCTGCTGCATTACTTT
1 TACTGGCAGCTCTGCTGCATTACTAT
* * * **
55715434 TACTGGTAGCTTTGTTGTGTTACTAT
1 TACTGGCAGCTCTGCTGCATTACTAT
*
55715460 TACTGGCAGCTCTGCTGCATTACTGT
1 TACTGGCAGCTCTGCTGCATTACTAT
55715486 TACTGGCA
1 TACTGGCA
55715494 TATTGCTGCG
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.16, C:0.21, G:0.22, T:0.41
Consensus pattern (26 bp):
TACTGGCAGCTCTGCTGCATTACTAT
Found at i:55715645 original size:30 final size:29
Alignment explanation
Indices: 55715609--55715695 Score: 111
Period size: 30 Copynumber: 2.9 Consensus size: 29
55715599 ACTGCATTTG
55715609 CACTGTTACTGTATTGGGCTAAGGCCCACA
1 CACTGTTACTGTATTGGGCT-AGGCCCACA
* * *
55715639 CTCTGTTACTGTATTGGGCTTGGCCTACA
1 CACTGTTACTGTATTGGGCTAGGCCCACA
* *
55715668 CACTGCTACTGTATAGGGCTTAGGCCCA
1 CACTGTTACTGTATTGGGC-TAGGCCCA
55715696 GACTGATTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
29 23 0.48
30 25 0.52
ACGTcount: A:0.20, C:0.26, G:0.24, T:0.30
Consensus pattern (29 bp):
CACTGTTACTGTATTGGGCTAGGCCCACA
Found at i:55715677 original size:29 final size:29
Alignment explanation
Indices: 55715609--55715695 Score: 111
Period size: 29 Copynumber: 2.9 Consensus size: 29
55715599 ACTGCATTTG
*
55715609 CACTGTTACTGTATTGGGCTAAGGCCCACA
1 CACTGTTACTGTATTGGGCT-TGGCCCACA
* *
55715639 CTCTGTTACTGTATTGGGCTTGGCCTACA
1 CACTGTTACTGTATTGGGCTTGGCCCACA
* *
55715668 CACTGCTACTGTATAGGGCTTAGGCCCA
1 CACTGTTACTGTATTGGGCTT-GGCCCA
55715696 GACTGATTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
29 25 0.51
30 24 0.49
ACGTcount: A:0.20, C:0.26, G:0.24, T:0.30
Consensus pattern (29 bp):
CACTGTTACTGTATTGGGCTTGGCCCACA
Found at i:55722310 original size:20 final size:20
Alignment explanation
Indices: 55722250--55722345 Score: 63
Period size: 21 Copynumber: 4.7 Consensus size: 20
55722240 AATTTAGCAA
55722250 TACTGAAGTACAAGCAGGGG
1 TACTGAAGTACAAGCAGGGG
* * *
55722270 CACAT-ATGTGA-AATTCAGGGG
1 TAC-TGAAGT-ACAA-GCAGGGG
55722291 TACTGAAGTACAAGCAGGGG
1 TACTGAAGTACAAGCAGGGG
* * *
55722311 CAC-GTATGTTCAATGCAGGGG
1 TACTG-AAGTACAA-GCAGGGG
*
55722332 TACCGAAGTACAAG
1 TACTGAAGTACAAG
55722346 TAAAGGTATG
Statistics
Matches: 56, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
19 1 0.02
20 24 0.43
21 30 0.54
22 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.31, T:0.19
Consensus pattern (20 bp):
TACTGAAGTACAAGCAGGGG
Found at i:55722330 original size:41 final size:41
Alignment explanation
Indices: 55722144--55722345 Score: 233
Period size: 41 Copynumber: 4.9 Consensus size: 41
55722134 GTGTAAAAAA
* * *
55722144 GGGCACGTATGTACAATTTAGGGGTACTGAAGTACAAACAG
1 GGGCACGTATGTGCAATTCAGGGGTACTGAAGTACAAGCAG
* * * * * *
55722185 GGGAACGCATGTGCATTTCAAGGCTACTGAAGTACAAACAG
1 GGGCACGTATGTGCAATTCAGGGGTACTGAAGTACAAGCAG
* * ***
55722226 GGGCACGTATGTGAAATTTAGCAATACTGAAGTACAAGCAG
1 GGGCACGTATGTGCAATTCAGGGGTACTGAAGTACAAGCAG
* *
55722267 GGGCACATATGTGAAATTCAGGGGTACTGAAGTACAAGCAG
1 GGGCACGTATGTGCAATTCAGGGGTACTGAAGTACAAGCAG
* * *
55722308 GGGCACGTATGTTCAATGCAGGGGTACCGAAGTACAAG
1 GGGCACGTATGTGCAATTCAGGGGTACTGAAGTACAAG
55722346 TAAAGGTATG
Statistics
Matches: 134, Mismatches: 27, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 134 1.00
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (41 bp):
GGGCACGTATGTGCAATTCAGGGGTACTGAAGTACAAGCAG
Found at i:55727009 original size:8 final size:8
Alignment explanation
Indices: 55726996--55727032 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
55726986 GTGAATCGGC
*
55726996 AAAAGCCG
1 AAAAGCCA
55727004 AAAAGCCA
1 AAAAGCCA
55727012 AAAAGCCA
1 AAAAGCCA
55727020 AAAAGCCA
1 AAAAGCCA
55727028 AAAAG
1 AAAAG
55727033 TAATAAATAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.62, C:0.22, G:0.16, T:0.00
Consensus pattern (8 bp):
AAAAGCCA
Found at i:55730693 original size:16 final size:16
Alignment explanation
Indices: 55730672--55730732 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
55730662 GTGAATCGAA
55730672 AAAAGCCGAAAAGATG
1 AAAAGCCGAAAAGATG
* *
55730688 AAAAGCCGAAAAGTTA
1 AAAAGCCGAAAAGATG
* *
55730704 AAAAGTC-AAAAAATTG
1 AAAAGCCGAAAAGA-TG
*
55730720 AAAAGCCAAAAAG
1 AAAAGCCGAAAAG
55730733 TAAAAAATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
15 4 0.11
16 27 0.77
17 4 0.11
ACGTcount: A:0.61, C:0.11, G:0.18, T:0.10
Consensus pattern (16 bp):
AAAAGCCGAAAAGATG
Found at i:55730739 original size:16 final size:16
Alignment explanation
Indices: 55730670--55730739 Score: 52
Period size: 16 Copynumber: 4.4 Consensus size: 16
55730660 CTGTGAATCG
*
55730670 AAAAAAGCCGAAAAG-
1 AAAAAAGCCAAAAAGT
* *
55730685 ATGAAAAGCCGAAAAGT
1 A-AAAAAGCCAAAAAGT
* * *
55730702 TAAAAAGTCAAAAAAT
1 AAAAAAGCCAAAAAGT
**
55730718 TGAAAAGCCAAAAAGT
1 AAAAAAGCCAAAAAGT
55730734 AAAAAA
1 AAAAAA
55730740 TATGGAAATT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
15 1 0.02
16 41 0.98
ACGTcount: A:0.64, C:0.10, G:0.16, T:0.10
Consensus pattern (16 bp):
AAAAAAGCCAAAAAGT
Found at i:55735842 original size:21 final size:21
Alignment explanation
Indices: 55735794--55735836 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
55735784 GGTAATTTTG
**
55735794 AAATTAATTTGAAATTAAAAC
1 AAATTAAAGTGAAATTAAAAC
55735815 AAATTAAAGTGAAATTAAAAC
1 AAATTAAAGTGAAATTAAAAC
55735836 A
1 A
55735837 TTTTAACTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.28
Consensus pattern (21 bp):
AAATTAAAGTGAAATTAAAAC
Found at i:55736828 original size:40 final size:40
Alignment explanation
Indices: 55736773--55737050 Score: 317
Period size: 40 Copynumber: 7.0 Consensus size: 40
55736763 ACGCGTTTTG
* * *
55736773 GTTGGATCAGCTCTTATGAGCTTCTGCTTGGCATGTTTCA
1 GTTGGATAAGCTCTTATGAGCTTCTGTTTGGCGTGTTTCA
55736813 GTTGGATAAGCTCTTATGAGCTTCTGTTTGGCGTGTTTCA
1 GTTGGATAAGCTCTTATGAGCTTCTGTTTGGCGTGTTTCA
* * *
55736853 GTTGGATAAACTCTTATGAGCTTCTGTTTGTCGTGTTTTA
1 GTTGGATAAGCTCTTATGAGCTTCTGTTTGGCGTGTTTCA
* * * * * *
55736893 GTTGGATCAGCTATTATGAGATTTTATTTGGTGTGTTTCA
1 GTTGGATAAGCTCTTATGAGCTTCTGTTTGGCGTGTTTCA
* * * * * * *
55736933 ATTTGATTAGCTCTTATGAGCTTTTGTTTGGTGTTTTTCG
1 GTTGGATAAGCTCTTATGAGCTTCTGTTTGGCGTGTTTCA
* *
55736973 GTTGGATTAGCTCTTATGAGCTTTTGTTTGGCGTGTTTC-
1 GTTGGATAAGCTCTTATGAGCTTCTGTTTGGCGTGTTTCA
* *
55737012 GATTGGATGAA-CTCTTATGAGCTTCTATTTGGTGTGTTT
1 G-TTGGAT-AAGCTCTTATGAGCTTCTGTTTGGCGTGTTT
55737051 GGTTGATCTG
Statistics
Matches: 205, Mismatches: 31, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 1 0.00
40 203 0.99
41 1 0.00
ACGTcount: A:0.15, C:0.13, G:0.25, T:0.47
Consensus pattern (40 bp):
GTTGGATAAGCTCTTATGAGCTTCTGTTTGGCGTGTTTCA
Found at i:55736987 original size:120 final size:120
Alignment explanation
Indices: 55736767--55737050 Score: 354
Period size: 120 Copynumber: 2.4 Consensus size: 120
55736757 TATTCGACGC
* ** ** *
55736767 GTTTTGGTTGGATCAGCTCTTATGAGCTTCTGCTTGGCATGTTTCAGTTGGATAAGCTCTTATGA
1 GTTTTAGTTGGATCAGCTCTTATGAGCTTCTATTTGGTGTGTTTCAATTGGATAAGCTCTTATGA
*
55736832 GCTTCTGTTTGGCGTGTTTCAGTTGGATAAACTCTTATGAGCTTCTGTTTGTCGT
66 GCTTCTGTTTGGCGTGTTTCAGTTGGATAAACTCTTATGAGCTTCTGTTTGGCGT
* * * * *
55736887 GTTTTAGTTGGATCAGCTATTATGAGATTTTATTTGGTGTGTTTCAATTTGATTAGCTCTTATGA
1 GTTTTAGTTGGATCAGCTCTTATGAGCTTCTATTTGGTGTGTTTCAATTGGATAAGCTCTTATGA
* * * * * * *
55736952 GCTTTTGTTTGGTGTTTTTCGGTTGGATTAGCTCTTATGAGCTTTTGTTTGGCGT
66 GCTTCTGTTTGGCGTGTTTCAGTTGGATAAACTCTTATGAGCTTCTGTTTGGCGT
* * *
55737007 G-TTTCGATTGGATGAACTCTTATGAGCTTCTATTTGGTGTGTTT
1 GTTTTAG-TTGGATCAGCTCTTATGAGCTTCTATTTGGTGTGTTT
55737051 GGTTGATCTG
Statistics
Matches: 138, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
119 4 0.03
120 134 0.97
ACGTcount: A:0.15, C:0.12, G:0.25, T:0.47
Consensus pattern (120 bp):
GTTTTAGTTGGATCAGCTCTTATGAGCTTCTATTTGGTGTGTTTCAATTGGATAAGCTCTTATGA
GCTTCTGTTTGGCGTGTTTCAGTTGGATAAACTCTTATGAGCTTCTGTTTGGCGT
Found at i:55737615 original size:16 final size:16
Alignment explanation
Indices: 55737594--55737630 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
55737584 AGCTTATGCT
55737594 AAGTAAATGGAACAAA
1 AAGTAAATGGAACAAA
55737610 AAGTAAATGGAACAAA
1 AAGTAAATGGAACAAA
55737626 AAGTA
1 AAGTA
55737631 GGTACGTGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.62, C:0.05, G:0.19, T:0.14
Consensus pattern (16 bp):
AAGTAAATGGAACAAA
Found at i:55745256 original size:50 final size:50
Alignment explanation
Indices: 55745136--55745374 Score: 253
Period size: 50 Copynumber: 4.6 Consensus size: 50
55745126 ATTTGGGTAA
* * * *
55745136 AGAGATCCCATGTAAGACCATGTCTTGGACATGGCATTGACATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAG---ATG
* * *
55745192 ATAGGTCCCCTGTAAGACCATGTTTGGGACATGGCATGGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* * * *
55745242 AGAGGTCCCATGTAAGACCATGACTGAGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* * * *
55745292 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCAACATT
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
** *
55745342 AGAACATCCCATGTAAGACCATGTGTGGGACAT
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACAT
55745375 AGCTTTGGCA
Statistics
Matches: 156, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
50 90 0.58
51 26 0.17
53 3 0.02
55 2 0.01
56 35 0.22
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
Found at i:55745324 original size:100 final size:103
Alignment explanation
Indices: 55745136--55745364 Score: 295
Period size: 100 Copynumber: 2.2 Consensus size: 103
55745126 ATTTGGGTAA
* *
55745136 AGAGATCCCATGTAAGACCATGTCTTGGACATGGCATTGACATCCTTGAGATCATGATAGGTCCC
1 AGAGATCCCATGTAAGACCATGACTTGGACATGGCATTGACATCC-TGAGA--ATGAGAGGTCCC
* * *
55745201 CTGTAAGACCATGTTTGGGACATGGCATGGGCACCGAGATG
63 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCAACATG
* * *
55745242 AGAGGTCCCATGTAAGACCATGAC-TGAGACATGGCGTTGGCA-CC-GAG-ATGAGAGGTCCCCT
1 AGAGATCCCATGTAAGACCATGACTTG-GACATGGCATTGACATCCTGAGAATGAGAGGTCCCCT
*
55745303 GTAAGACCATGTCTGGGACATGGCATGGGCACCAACATT
65 GTAAGACCATGTCTGGGACATGGCATGGGCACCAACATG
*
55745342 AGAACATCCCATGTAAGACCATG
1 AG-AGATCCCATGTAAGACCATG
55745365 TGTGGGACAT
Statistics
Matches: 110, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
100 50 0.45
101 18 0.16
103 3 0.03
105 4 0.04
106 35 0.32
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGACTTGGACATGGCATTGACATCCTGAGAATGAGAGGTCCCCTG
TAAGACCATGTCTGGGACATGGCATGGGCACCAACATG
Found at i:55752019 original size:56 final size:50
Alignment explanation
Indices: 55751946--55752189 Score: 299
Period size: 50 Copynumber: 4.7 Consensus size: 50
55751936 GGTAAAAAGA
* *
55751946 TCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCCTTGAGATCATGATAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ATGAGAGG
* * *
55752002 TCCCTTATAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
*
55752052 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * * **
55752102 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCAACATGAGAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG-AGG
*
55752153 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
55752190 TGTTTTTACC
Statistics
Matches: 166, Mismatches: 21, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
50 94 0.57
51 34 0.20
53 3 0.02
55 2 0.01
56 33 0.20
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:55752131 original size:100 final size:104
Alignment explanation
Indices: 55751945--55752190 Score: 338
Period size: 100 Copynumber: 2.4 Consensus size: 104
55751935 GGGTAAAAAG
* * **
55751945 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCCTTGAGATCATGATAGGTCCCTTAT
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC-TGAGA--ATGAGAGGTCCCCCAT
* * *
55752010 AAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAG-AG
63 AAGACCATGTCTGGGACATGGCATGGGCACCAACATGAGAAC
* * *
55752051 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GAG-ATGAGAGGTCCCCCGTAAG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTGAGAATGAGAGGTCCCCCATAAG
55752113 ACCATGTCTGGGACATGGCATGGGCACCAACATGAGAAC
66 ACCATGTCTGGGACATGGCATGGGCACCAACATGAGAAC
*
55752152 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
55752191 GTTTTTACCA
Statistics
Matches: 126, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
100 49 0.39
101 37 0.29
103 3 0.02
105 2 0.02
106 35 0.28
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (104 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTGAGAATGAGAGGTCCCCCATAAG
ACCATGTCTGGGACATGGCATGGGCACCAACATGAGAAC
Found at i:55765561 original size:12 final size:12
Alignment explanation
Indices: 55765544--55765573 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
55765534 TCCCACACGC
55765544 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
55765556 CCGTGTGCTAGG
1 CCGTGTGCCAGG
55765568 CCGTGT
1 CCGTGT
55765574 AACAGCTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.30, G:0.40, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:55770457 original size:39 final size:40
Alignment explanation
Indices: 55770362--55770623 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
55770352 TTGAATGATG
*
55770362 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
55770400 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
55770441 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
55770480 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
55770519 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
55770558 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
55770597 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
55770624 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:55779574 original size:40 final size:40
Alignment explanation
Indices: 55779485--55779748 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
55779475 TTGAATGATG
* *
55779485 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
55779524 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
55779564 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
55779603 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
55779643 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
55779683 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
55779724 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
55779749 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:55779766 original size:120 final size:118
Alignment explanation
Indices: 55779485--55779781 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
55779475 TTGAATGATG
* *
55779485 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
55779545 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
55779603 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
55779668 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
55779724 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
55779782 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:55795084 original size:42 final size:42
Alignment explanation
Indices: 55795025--55795106 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
55795015 GAATTCTACC
55795025 CATCGGGCATGCCGTTTACTCAACTTACCTTGTCCCTTTACT
1 CATCGGGCATGCCGTTTACTCAACTTACCTTGTCCCTTTACT
**
55795067 CATCGGGCATGTTGTTTACTCAACTTACCTTGTCCCTTTA
1 CATCGGGCATGCCGTTTACTCAACTTACCTTGTCCCTTTA
55795107 ACCATTTAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.17, C:0.30, G:0.15, T:0.38
Consensus pattern (42 bp):
CATCGGGCATGCCGTTTACTCAACTTACCTTGTCCCTTTACT
Found at i:55801574 original size:13 final size:13
Alignment explanation
Indices: 55801556--55801583 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
55801546 TTGTTTGATG
55801556 CATCGATCCCTAT
1 CATCGATCCCTAT
55801569 CATCGATCCCTAT
1 CATCGATCCCTAT
55801582 CA
1 CA
55801584 CATGATCTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.39, G:0.07, T:0.29
Consensus pattern (13 bp):
CATCGATCCCTAT
Found at i:55801863 original size:13 final size:13
Alignment explanation
Indices: 55801845--55801872 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
55801835 TTGTTTGATG
55801845 CATCGATCCCTAT
1 CATCGATCCCTAT
55801858 CATCGATCCCTAT
1 CATCGATCCCTAT
55801871 CA
1 CA
55801873 CATGATCTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.39, G:0.07, T:0.29
Consensus pattern (13 bp):
CATCGATCCCTAT
Found at i:55801993 original size:289 final size:289
Alignment explanation
Indices: 55801474--55802052 Score: 1158
Period size: 289 Copynumber: 2.0 Consensus size: 289
55801464 CTGGTTTCAA
55801474 TTTAAACTGGGTTGCCTCAATATATGGCCTTTTAATTACTGAGTTTAACTCACTGAAAAGTGGCA
1 TTTAAACTGGGTTGCCTCAATATATGGCCTTTTAATTACTGAGTTTAACTCACTGAAAAGTGGCA
55801539 CAGCATATTGTTTGATGCATCGATCCCTATCATCGATCCCTATCACATGATCTGCTTCCTTACCT
66 CAGCATATTGTTTGATGCATCGATCCCTATCATCGATCCCTATCACATGATCTGCTTCCTTACCT
55801604 TGGTCTTGATTCTGATTTCCAAGGTCCATCTCGACTTGTCTTTGAGCTATTCGTTCACGTCTTCT
131 TGGTCTTGATTCTGATTTCCAAGGTCCATCTCGACTTGTCTTTGAGCTATTCGTTCACGTCTTCT
55801669 TTGTCTGAAAGTTTGCTCAATTTCAAGGTCTATAGGGAATAAATCGATAATTTGATCTATGCTCA
196 TTGTCTGAAAGTTTGCTCAATTTCAAGGTCTATAGGGAATAAATCGATAATTTGATCTATGCTCA
55801734 TAAACACCTGAAAAGAAAATCACAAAAAT
261 TAAACACCTGAAAAGAAAATCACAAAAAT
55801763 TTTAAACTGGGTTGCCTCAATATATGGCCTTTTAATTACTGAGTTTAACTCACTGAAAAGTGGCA
1 TTTAAACTGGGTTGCCTCAATATATGGCCTTTTAATTACTGAGTTTAACTCACTGAAAAGTGGCA
55801828 CAGCATATTGTTTGATGCATCGATCCCTATCATCGATCCCTATCACATGATCTGCTTCCTTACCT
66 CAGCATATTGTTTGATGCATCGATCCCTATCATCGATCCCTATCACATGATCTGCTTCCTTACCT
55801893 TGGTCTTGATTCTGATTTCCAAGGTCCATCTCGACTTGTCTTTGAGCTATTCGTTCACGTCTTCT
131 TGGTCTTGATTCTGATTTCCAAGGTCCATCTCGACTTGTCTTTGAGCTATTCGTTCACGTCTTCT
55801958 TTGTCTGAAAGTTTGCTCAATTTCAAGGTCTATAGGGAATAAATCGATAATTTGATCTATGCTCA
196 TTGTCTGAAAGTTTGCTCAATTTCAAGGTCTATAGGGAATAAATCGATAATTTGATCTATGCTCA
55802023 TAAACACCTGAAAAGAAAATCACAAAAAT
261 TAAACACCTGAAAAGAAAATCACAAAAAT
55802052 T
1 T
55802053 AAAAAGAATA
Statistics
Matches: 290, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
289 290 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (289 bp):
TTTAAACTGGGTTGCCTCAATATATGGCCTTTTAATTACTGAGTTTAACTCACTGAAAAGTGGCA
CAGCATATTGTTTGATGCATCGATCCCTATCATCGATCCCTATCACATGATCTGCTTCCTTACCT
TGGTCTTGATTCTGATTTCCAAGGTCCATCTCGACTTGTCTTTGAGCTATTCGTTCACGTCTTCT
TTGTCTGAAAGTTTGCTCAATTTCAAGGTCTATAGGGAATAAATCGATAATTTGATCTATGCTCA
TAAACACCTGAAAAGAAAATCACAAAAAT
Found at i:55818677 original size:13 final size:13
Alignment explanation
Indices: 55818659--55818684 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
55818649 ACTTGTCGTG
55818659 TGTGAATGTGTAA
1 TGTGAATGTGTAA
55818672 TGTGAATGTGTAA
1 TGTGAATGTGTAA
55818685 GTATACACGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.38
Consensus pattern (13 bp):
TGTGAATGTGTAA
Found at i:55832394 original size:22 final size:22
Alignment explanation
Indices: 55832369--55832413 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
55832359 ATTATGATGA
55832369 TTGATATGT-TGAGATTGATATT
1 TTGATATGTATGAGATT-ATATT
*
55832391 TTGATATGTATGCGATTATATT
1 TTGATATGTATGAGATTATATT
55832413 T
1 T
55832414 GTGTTGATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (22 bp):
TTGATATGTATGAGATTATATT
Found at i:55836366 original size:40 final size:41
Alignment explanation
Indices: 55836303--55836383 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 41
55836293 CAGACAGAAC
* * *
55836303 CTCATAAGAGTTAATCCAACCGAAATATGCCAAACA-AAAG
1 CTCATAAGAGCTAATCCAACCGAAACAGGCCAAACAGAAAG
* *
55836343 CTCATAAGAGCTAGTCCACCCGAAACAGGCCAAACAGAAAG
1 CTCATAAGAGCTAATCCAACCGAAACAGGCCAAACAGAAAG
55836384 TATAACACGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
40 31 0.89
41 4 0.11
ACGTcount: A:0.44, C:0.26, G:0.16, T:0.14
Consensus pattern (41 bp):
CTCATAAGAGCTAATCCAACCGAAACAGGCCAAACAGAAAG
Found at i:55845185 original size:14 final size:14
Alignment explanation
Indices: 55845166--55845192 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
55845156 CTTTATTTAT
55845166 TTAAATAAAATATC
1 TTAAATAAAATATC
55845180 TTAAATAAAATAT
1 TTAAATAAAATAT
55845193 TAAAGAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (14 bp):
TTAAATAAAATATC
Found at i:55845379 original size:29 final size:29
Alignment explanation
Indices: 55845325--55845380 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
55845315 GCTTTTAAAG
* *
55845325 ATATTTACAAAAAGAGACAGCTAATTTCA
1 ATATTTACAAAAAGAGACACCAAATTTCA
55845354 ATATTTACAAAAAGA-ACAACCAAATTT
1 ATATTTACAAAAAGAGAC-ACCAAATTT
55845381 TGCACATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 22 0.92
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (29 bp):
ATATTTACAAAAAGAGACACCAAATTTCA
Found at i:55856151 original size:50 final size:50
Alignment explanation
Indices: 55856044--55856240 Score: 205
Period size: 50 Copynumber: 3.8 Consensus size: 50
55856034 TTAAGGGAAT
**
55856044 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCTTCATTGAGATTATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG---CACCGAG---ATGA
* *
55856100 GAGGTCCCATGTAAGACCATGTCTGCGACATGGCGTTGGCACCGAGATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
** * * *
55856150 GAGGTCCCCCGTAAGACCATGTCTGAGACATGGCATGGGCACCGATATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
** * * * *
55856200 GAACTCCCAGGTAAAACCATATCTGGGATATGGCATTGGCA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
55856241 GTACAGAAAA
Statistics
Matches: 122, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
50 80 0.66
53 5 0.04
56 37 0.30
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
Found at i:55859337 original size:36 final size:36
Alignment explanation
Indices: 55859296--55859371 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
55859286 CCATTAACTA
55859296 GTATTATTACAAGCACTAATTTCTTTGTTAACTCTT
1 GTATTATTACAAGCACTAATTTCTTTGTTAACTCTT
*
55859332 GTATTATTACAAGCACTAATTTCTTTTTTAACTCTT
1 GTATTATTACAAGCACTAATTTCTTTGTTAACTCTT
55859368 GTAT
1 GTAT
55859372 CATATTCAGC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.49
Consensus pattern (36 bp):
GTATTATTACAAGCACTAATTTCTTTGTTAACTCTT
Found at i:55859417 original size:59 final size:59
Alignment explanation
Indices: 55859332--55859547 Score: 432
Period size: 59 Copynumber: 3.7 Consensus size: 59
55859322 GTTAACTCTT
55859332 GTATTATTACAAGCACTAATTTCTTTTTTAACTCTTGTATCATATTCAGCCATTAACTA
1 GTATTATTACAAGCACTAATTTCTTTTTTAACTCTTGTATCATATTCAGCCATTAACTA
55859391 GTATTATTACAAGCACTAATTTCTTTTTTAACTCTTGTATCATATTCAGCCATTAACTA
1 GTATTATTACAAGCACTAATTTCTTTTTTAACTCTTGTATCATATTCAGCCATTAACTA
55859450 GTATTATTACAAGCACTAATTTCTTTTTTAACTCTTGTATCATATTCAGCCATTAACTA
1 GTATTATTACAAGCACTAATTTCTTTTTTAACTCTTGTATCATATTCAGCCATTAACTA
55859509 GTATTATTACAAGCACTAATTTCTTTTTTAACTCTTGTA
1 GTATTATTACAAGCACTAATTTCTTTTTTAACTCTTGTA
55859548 GGGAAGCCAA
Statistics
Matches: 157, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 157 1.00
ACGTcount: A:0.30, C:0.18, G:0.07, T:0.45
Consensus pattern (59 bp):
GTATTATTACAAGCACTAATTTCTTTTTTAACTCTTGTATCATATTCAGCCATTAACTA
Found at i:55859987 original size:53 final size:53
Alignment explanation
Indices: 55859929--55860090 Score: 315
Period size: 53 Copynumber: 3.1 Consensus size: 53
55859919 ACACTCATGC
*
55859929 ACATTAATTAATTGAACATGCAACTTAAATCTCCTTATTTAAAATGAAAATAA
1 ACATTAATTAATTGAACATGCAACTTAAATCACCTTATTTAAAATGAAAATAA
55859982 ACATTAATTAATTGAACATGCAACTTAAATCACCTTATTTAAAATGAAAATAA
1 ACATTAATTAATTGAACATGCAACTTAAATCACCTTATTTAAAATGAAAATAA
55860035 ACATTAATTAATTGAACATGCAACTTAAATCACCTTATTTAAAATGAAAATAA
1 ACATTAATTAATTGAACATGCAACTTAAATCACCTTATTTAAAATGAAAATAA
55860088 ACA
1 ACA
55860091 CACTTTAACT
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
53 108 1.00
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.32
Consensus pattern (53 bp):
ACATTAATTAATTGAACATGCAACTTAAATCACCTTATTTAAAATGAAAATAA
Found at i:55860283 original size:52 final size:50
Alignment explanation
Indices: 55860218--55860333 Score: 142
Period size: 50 Copynumber: 2.3 Consensus size: 50
55860208 ATGAACAAAT
* * * *
55860218 GAGTTACTTAATGCATAACTTAATTTAATGATGCCAACTTTAACTAACATGG
1 GAGTTACATAATGCATAACATAATTT-ATGATGCAAAC-TTAACTAACATGA
* ** *
55860270 GAGTTGCATAATGCATGTCATAGTTTATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATAACATAATTTATGATGCAAACTTAACTAACATGA
55860320 GAGTTACATAATGC
1 GAGTTACATAATGC
55860334 GTGACTTTAT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 25 0.45
51 10 0.18
52 20 0.36
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (50 bp):
GAGTTACATAATGCATAACATAATTTATGATGCAAACTTAACTAACATGA
Found at i:55872047 original size:74 final size:74
Alignment explanation
Indices: 55871919--55872066 Score: 251
Period size: 74 Copynumber: 2.0 Consensus size: 74
55871909 TAACTGATTC
*
55871919 CAACCAAATAGTCACCTGCAAGCATTTATTAACAAACACACTAAAACACATTTTAACACACTAAA
1 CAACCAAATAGTCACCTGCAAGCATGTATTAACAAACACACTAAAACACATTTTAACACACTAAA
55871984 CTTAATAAG
66 CTTAATAAG
* * * *
55871993 CAACTAAATAGTCATCTGCAAGCATGTATTAACAAACACATTAAAACACTTTTTAACACACTAAA
1 CAACCAAATAGTCACCTGCAAGCATGTATTAACAAACACACTAAAACACATTTTAACACACTAAA
55872058 CTTAATAAG
66 CTTAATAAG
55872067 TTTAATTAAT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.47, C:0.22, G:0.06, T:0.25
Consensus pattern (74 bp):
CAACCAAATAGTCACCTGCAAGCATGTATTAACAAACACACTAAAACACATTTTAACACACTAAA
CTTAATAAG
Found at i:55874809 original size:50 final size:50
Alignment explanation
Indices: 55874689--55874929 Score: 209
Period size: 50 Copynumber: 4.7 Consensus size: 50
55874679 GGTAAATAGA
*
55874689 TCCCATGTAAGACCATGTCT-GGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGG
*
55874744 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * ** * * **
55874794 TCCCCCGTAAGACCATGTCTAGGACATTACATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * * * * **
55874844 TCCCATGTAAGACCATATCTGGGATATGGCATTGGTA--GTACAAGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGG
* *
55874893 TCCCATGTAAGACCATGTTTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
55874930 TGTTATTATC
Statistics
Matches: 153, Mismatches: 31, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 37 0.24
50 76 0.50
53 3 0.02
55 21 0.14
56 15 0.10
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:55878037 original size:15 final size:15
Alignment explanation
Indices: 55878005--55878046 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
55877995 TCACCTTTTC
* *
55878005 CTTTTTTTT-TCATT
1 CTTTTTTTTCTTATA
55878019 CTTTTTTTTCTTATA
1 CTTTTTTTTCTTATA
55878034 CTTTTTCTTTCTT
1 CTTTTT-TTTCTT
55878047 TTCTTTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 9 0.38
15 9 0.38
16 6 0.25
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (15 bp):
CTTTTTTTTCTTATA
Found at i:55881135 original size:74 final size:74
Alignment explanation
Indices: 55881038--55881185 Score: 242
Period size: 74 Copynumber: 2.0 Consensus size: 74
55881028 TAACTGATTC
* * *
55881038 CAACCAAATAGTCACCTGGAAGCATTTATTAACAAACACATTAAAACACATTTAAACACACTAAA
1 CAACCAAATAGTCACCTGCAAGCAGTTATTAACAAACACATTAAAACACATTTAAACACACAAAA
55881103 CTTAATAAG
66 CTTAATAAG
* *
55881112 CAACTAAATAGTCACCTGCAAGCAGTTATTAACAAACACATTAAAACACATTTTAACACACAAAA
1 CAACCAAATAGTCACCTGCAAGCAGTTATTAACAAACACATTAAAACACATTTAAACACACAAAA
*
55881177 CTTATTAAG
66 CTTAATAAG
55881186 TTTAATTAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 68 1.00
ACGTcount: A:0.48, C:0.22, G:0.07, T:0.24
Consensus pattern (74 bp):
CAACCAAATAGTCACCTGCAAGCAGTTATTAACAAACACATTAAAACACATTTAAACACACAAAA
CTTAATAAG
Found at i:55890597 original size:27 final size:28
Alignment explanation
Indices: 55890546--55890607 Score: 92
Period size: 27 Copynumber: 2.2 Consensus size: 28
55890536 AAATTAAATT
*
55890546 TATAAAACCCTAAAATTAACAACATTAA
1 TATAAAACCCTAAAATCAACAACATTAA
55890574 TATAAAACCCT-AAATCATAC-ACATTAA
1 TATAAAACCCTAAAATCA-ACAACATTAA
55890601 TATAAAA
1 TATAAAA
55890608 TTATTATTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 19 0.59
28 13 0.41
ACGTcount: A:0.56, C:0.18, G:0.00, T:0.26
Consensus pattern (28 bp):
TATAAAACCCTAAAATCAACAACATTAA
Found at i:55890761 original size:51 final size:51
Alignment explanation
Indices: 55890655--55890757 Score: 120
Period size: 51 Copynumber: 2.0 Consensus size: 51
55890645 TATTTTTTTG
* * * **
55890655 AATTTTTTAGAATTAGGATTAAATTGAGACTACTTGTAAATTTTAAGGGTT
1 AATTTTTTAAAATTAGGACTAAATTGAGACTAATTGTAAAAGTTAAGGGTT
* *
55890706 AATTTTTTAAAATTATGACTAAATTGATA-TAATATGTAAAAGTTAA-GGTT
1 AATTTTTTAAAATTAGGACTAAATTGAGACTAAT-TGTAAAAGTTAAGGGTT
55890756 AA
1 AA
55890758 ATTTATTATT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
50 9 0.20
51 35 0.80
ACGTcount: A:0.41, C:0.03, G:0.15, T:0.42
Consensus pattern (51 bp):
AATTTTTTAAAATTAGGACTAAATTGAGACTAATTGTAAAAGTTAAGGGTT
Found at i:55891049 original size:18 final size:17
Alignment explanation
Indices: 55891009--55891050 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
55890999 TTAAAGAAAT
55891009 TATTTTTATCATATTAA
1 TATTTTTATCATATTAA
55891026 TAATTTTTAT-AGTAATTAA
1 T-ATTTTTATCA-T-ATTAA
55891045 TATTTT
1 TATTTT
55891051 AAAAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.09
18 14 0.64
19 6 0.27
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (17 bp):
TATTTTTATCATATTAA
Found at i:55912820 original size:26 final size:27
Alignment explanation
Indices: 55912771--55912827 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
55912761 AAATGTTGTT
55912771 AAATGACCAAAATACCCTCAAAGGGTA
1 AAATGACCAAAATACCCTCAAAGGGTA
*
55912798 AAATGACCAAAATACCC-CTAAGGGTA
1 AAATGACCAAAATACCCTCAAAGGGTA
55912824 AAAT
1 AAAT
55912828 TACCGTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 12 0.41
27 17 0.59
ACGTcount: A:0.49, C:0.21, G:0.14, T:0.16
Consensus pattern (27 bp):
AAATGACCAAAATACCCTCAAAGGGTA
Found at i:55915868 original size:34 final size:34
Alignment explanation
Indices: 55915825--55915900 Score: 134
Period size: 34 Copynumber: 2.2 Consensus size: 34
55915815 AGATTTAAAC
55915825 AAATTAATTACTAACACTTATTTAAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
55915859 AAATTAATTACTAACACTTATTTGAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
55915893 AAGTTAAT
1 AAATTAAT
55915901 GAACTAACTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.36
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:55917840 original size:6 final size:6
Alignment explanation
Indices: 55917831--55917884 Score: 72
Period size: 6 Copynumber: 9.0 Consensus size: 6
55917821 TCGCTTGCAA
* * **
55917831 TTTCTT TTTCTT TTTCAT TTTCTA TTTCTT TTTCAC TTTCTT TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
55917879 TTTCTT
1 TTTCTT
55917885 CCTCTTTGTT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTCTT
Found at i:55917852 original size:18 final size:17
Alignment explanation
Indices: 55917804--55917882 Score: 86
Period size: 18 Copynumber: 4.4 Consensus size: 17
55917794 TTTTCTCTCA
55917804 CTTTTTCGATTTCTTTTT
1 CTTTTTC-ATTTCTTTTT
** *
55917822 CGCTTGCAATTTCTTTTT
1 CTTTTTC-ATTTCTTTTT
*
55917840 CTTTTTCATTTTCTATTT
1 CTTTTTCA-TTTCTTTTT
55917858 CTTTTTCACTTTCTTTTT
1 CTTTTTCA-TTTCTTTTT
55917876 CTTTTTC
1 CTTTTTC
55917883 TTCCTCTTTG
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
17 1 0.02
18 49 0.98
ACGTcount: A:0.08, C:0.20, G:0.04, T:0.68
Consensus pattern (17 bp):
CTTTTTCATTTCTTTTT
Found at i:55920597 original size:37 final size:33
Alignment explanation
Indices: 55920525--55920589 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
55920515 TTAAACAAAT
55920525 TAATTACTAACACTTATTTAAGCTGAACTAAAA
1 TAATTACTAACACTTATTTAAGCTGAACTAAAA
*
55920558 TAATTACTAACACTTATTTGAGCTGAACTAAA
1 TAATTACTAACACTTATTTAAGCTGAACTAAA
55920590 GTTAATAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (33 bp):
TAATTACTAACACTTATTTAAGCTGAACTAAAA
Found at i:55929983 original size:28 final size:27
Alignment explanation
Indices: 55929926--55930077 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
55929916 TAAATTGTGC
*
55929926 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
55929953 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
55929981 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
55930008 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
55930036 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
55930063 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
55930078 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:55929990 original size:55 final size:55
Alignment explanation
Indices: 55929926--55930077 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
55929916 TAAATTGTGC
*
55929926 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
55929981 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
55930036 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
55930078 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:55942283 original size:17 final size:17
Alignment explanation
Indices: 55942254--55942286 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
55942244 TAGAATTCGT
55942254 TTGAGTAAATTATTTAA
1 TTGAGTAAATTATTTAA
55942271 TTGAG-AAATTTATTTA
1 TTGAGTAAA-TTATTTA
55942287 TTTAAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (17 bp):
TTGAGTAAATTATTTAA
Found at i:55954576 original size:273 final size:273
Alignment explanation
Indices: 55954082--55954626 Score: 973
Period size: 273 Copynumber: 2.0 Consensus size: 273
55954072 AGAGATAAAT
* * *
55954082 GACTTAAGGATTATTGCATCAAAGTTTAATCATAAAAAGGTTATATTGAATCATGATTTCTTGTG
1 GACTTAAGGATTATTGCATAAAAGGTTAATCATAAAAAGGTTATATCGAATCATGATTTCTTGTG
*
55954147 ACTTAGGTAGCAATGATGCATTGCTAGATGCCACTCATTTTTTGTAACATTGAAATCGTTCTAGT
66 ACTTAGGTAGCAATGATGCATTGCTAGATGCCACTCATTGTTTGTAACATTGAAATCGTTCTAGT
55954212 ATTACTGCTAACGTTACAGGAACCTACAGAGTCACACCCTATAGTTGAAATGAACGGAATAAAAC
131 ATTACTGCTAACGTTACAGGAACCTACAGAGTCACACCCTATAGTTGAAATGAACGGAATAAAAC
*
55954277 ATAATTGGTATTGTGTTTGATTGTCGCTTGAATTGAATTAATTATAAAATTAATTTAATTGGGTA
196 ATAATTGGTATTGTGTTTGATTGTCGCTTGAATTAAATTAATTATAAAATTAATTTAATTGGGTA
55954342 ATCAAATATCGAG
261 ATCAAATATCGAG
55954355 GACTTAAGGATTATTGCATAAAAGGTTAATCATAAAAAGGTTATATCGAATCATGATTTCTTGTG
1 GACTTAAGGATTATTGCATAAAAGGTTAATCATAAAAAGGTTATATCGAATCATGATTTCTTGTG
* * *
55954420 ACTTAGGTAGCAGTGATGCATTGCTAGATGCCACTTATTGTTTGTAACATTGGAATCGTTCTAGT
66 ACTTAGGTAGCAATGATGCATTGCTAGATGCCACTCATTGTTTGTAACATTGAAATCGTTCTAGT
* *
55954485 ATTACTGCTAACGTTATAGGAACCTACAGGGTCACACCCTATAGTTGAAATGAACGGAATAAAAC
131 ATTACTGCTAACGTTACAGGAACCTACAGAGTCACACCCTATAGTTGAAATGAACGGAATAAAAC
* * *
55954550 ATAGTTGGTATTGTGTTTGGTTGTCGCTTGAATTAAATTAATTATAGAATTAATTTAATTGGGTA
196 ATAATTGGTATTGTGTTTGATTGTCGCTTGAATTAAATTAATTATAAAATTAATTTAATTGGGTA
55954615 ATCAAATATCGA
261 ATCAAATATCGA
55954627 ACACATTATG
Statistics
Matches: 259, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
273 259 1.00
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35
Consensus pattern (273 bp):
GACTTAAGGATTATTGCATAAAAGGTTAATCATAAAAAGGTTATATCGAATCATGATTTCTTGTG
ACTTAGGTAGCAATGATGCATTGCTAGATGCCACTCATTGTTTGTAACATTGAAATCGTTCTAGT
ATTACTGCTAACGTTACAGGAACCTACAGAGTCACACCCTATAGTTGAAATGAACGGAATAAAAC
ATAATTGGTATTGTGTTTGATTGTCGCTTGAATTAAATTAATTATAAAATTAATTTAATTGGGTA
ATCAAATATCGAG
Found at i:55957535 original size:22 final size:22
Alignment explanation
Indices: 55957490--55957535 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
55957480 CGTATGCTAA
* * * *
55957490 ATTTGTGATAAATATGTTTTTG
1 ATTTGTGATAAAAAAGATTATG
55957512 ATTTGTGATAAAAAAGATTATG
1 ATTTGTGATAAAAAAGATTATG
55957534 AT
1 AT
55957536 GTGATGAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (22 bp):
ATTTGTGATAAAAAAGATTATG
Found at i:55958847 original size:30 final size:30
Alignment explanation
Indices: 55958811--55958872 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
55958801 AATTGGTAAA
55958811 ATTAACAAAAGATAAATAAAAGAATAGAAG
1 ATTAACAAAAGATAAATAAAAGAATAGAAG
55958841 ATTAACAAAAGATAAATAAAAGAATAGAAG
1 ATTAACAAAAGATAAATAAAAGAATAGAAG
55958871 AT
1 AT
55958873 AAAGATAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.66, C:0.03, G:0.13, T:0.18
Consensus pattern (30 bp):
ATTAACAAAAGATAAATAAAAGAATAGAAG
Found at i:55959051 original size:29 final size:29
Alignment explanation
Indices: 55958996--55959051 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
55958986 ATTTTTATTT
*
55958996 ATTTGAAGTGACTAAATTGAGAAAAATAA
1 ATTTGAAGTGACTAAATTAAGAAAAATAA
*
55959025 ATTTGAAGTGACCTAAA-TAAGACAAAT
1 ATTTGAAGTGA-CTAAATTAAGAAAAAT
55959052 CATATTTTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.50, C:0.07, G:0.16, T:0.27
Consensus pattern (29 bp):
ATTTGAAGTGACTAAATTAAGAAAAATAA
Found at i:55968721 original size:15 final size:16
Alignment explanation
Indices: 55968703--55968732 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
55968693 TTTCGCCCTT
55968703 TTCATTTTCA-TTTTC
1 TTCATTTTCACTTTTC
55968718 TTCATTTTCACTTTT
1 TTCATTTTCACTTTT
55968733 ATTTTTCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.13, C:0.20, G:0.00, T:0.67
Consensus pattern (16 bp):
TTCATTTTCACTTTTC
Found at i:55971970 original size:23 final size:22
Alignment explanation
Indices: 55971940--55971997 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 22
55971930 ATATGAATCA
*
55971940 AAAT-TAATTATAATAATTAACC
1 AAATATAATAATAATAATT-ACC
*
55971962 AAATATAATAATTATAATTACC
1 AAATATAATAATAATAATTACC
55971984 ATAATTATAATAAT
1 A-AA-TATAATAAT
55971998 GTTTGACCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 8 0.26
23 14 0.45
24 9 0.29
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (22 bp):
AAATATAATAATAATAATTACC
Found at i:55977700 original size:40 final size:40
Alignment explanation
Indices: 55977602--55977864 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
55977592 TCCTCGTTCA
* * * * *
55977602 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
55977641 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
55977681 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
55977721 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
55977761 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
55977801 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
55977841 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
55977865 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:55985653 original size:40 final size:40
Alignment explanation
Indices: 55985555--55985817 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
55985545 TCCTCGTTCA
* * * * *
55985555 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
55985594 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
55985634 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
55985674 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
55985714 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
55985754 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
55985794 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
55985818 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:55988889 original size:20 final size:18
Alignment explanation
Indices: 55988864--55988906 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
55988854 TGATATGTTT
*
55988864 TTAATACTTTTTTATTAATA
1 TTAATA-TTTATTATTAA-A
55988884 TTAATATTTATTATTAAA
1 TTAATATTTATTATTAAA
55988902 TTAAT
1 TTAAT
55988907 CATATAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.27
19 10 0.45
20 6 0.27
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (18 bp):
TTAATATTTATTATTAAA
Found at i:56008892 original size:20 final size:20
Alignment explanation
Indices: 56008867--56008912 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
56008857 AATTAAACCG
56008867 AGCTCAAATGAGCTGAATTA
1 AGCTCAAATGAGCTGAATTA
** *
56008887 AGCTCATGTGAGTTGAATTA
1 AGCTCAAATGAGCTGAATTA
*
56008907 AACTCA
1 AGCTCA
56008913 TGTGAGCTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (20 bp):
AGCTCAAATGAGCTGAATTA
Found at i:56008913 original size:20 final size:20
Alignment explanation
Indices: 56008875--56008920 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
56008865 CGAGCTCAAA
*
56008875 TGAGCTGAATTAAGCTCATG
1 TGAGCTGAATTAAACTCATG
*
56008895 TGAGTTGAATTAAACTCATG
1 TGAGCTGAATTAAACTCATG
56008915 TGAGCT
1 TGAGCT
56008921 AAACCGAGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (20 bp):
TGAGCTGAATTAAACTCATG
Found at i:56016650 original size:41 final size:41
Alignment explanation
Indices: 56016591--56016739 Score: 244
Period size: 41 Copynumber: 3.6 Consensus size: 41
56016581 CATTGAATGT
* * * *
56016591 AAGGGGTTGCTAAATGCAGATTCCTTGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCTGAAACTCTGATCAAA
56016632 AAGGGGTTGCTAAGTGCAGATTCCCTGAAACTCTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCTGAAACTCTGATCAAA
*
56016673 AAGGGGTTGCTAAGTGCAGATTCCCCGAAACTCTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCTGAAACTCTGATCAAA
*
56016714 AAGGGGTAGCTAAGTGCAGATTCCCT
1 AAGGGGTTGCTAAGTGCAGATTCCCT
56016740 AAGGGGTTGC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 101 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCAGATTCCCTGAAACTCTGATCAAA
Found at i:56016751 original size:26 final size:26
Alignment explanation
Indices: 56016714--56016764 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
56016704 TCTGATCAAA
56016714 AAGGGGTAGCTAAGTGCAGATTCCCT
1 AAGGGGTAGCTAAGTGCAGATTCCCT
* *
56016740 AAGGGGTTGCTAAGTGCTGATTCCC
1 AAGGGGTAGCTAAGTGCAGATTCCC
56016765 CGAATTATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (26 bp):
AAGGGGTAGCTAAGTGCAGATTCCCT
Found at i:56021544 original size:56 final size:58
Alignment explanation
Indices: 56021410--56021545 Score: 154
Period size: 61 Copynumber: 2.3 Consensus size: 58
56021400 TATTCCAAAA
* * *
56021410 ATACTATTATTTTAATAGTTTTAATATTTAATTTAATTTAATAATTATCTTAGAGATAAGT
1 ATACTATTAATTTAATA-TTTTAATATTAAATTTAATTGAATAATTATCTT--AGATAAGT
**
56021471 ATACTATTAATTTAATATATTTAATATTAAATTTAATTGAATGTTTATCTT-GATAAGT
1 ATACTATTAATTTAATAT-TTTAATATTAAATTTAATTGAATAATTATCTTAGATAAGT
56021529 AT--TA-TATATTTAATATT
1 ATACTATTA-ATTTAATATT
56021546 AAAGTGATTA
Statistics
Matches: 68, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
55 3 0.04
56 11 0.16
58 9 0.13
60 1 0.01
61 44 0.65
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (58 bp):
ATACTATTAATTTAATATTTTAATATTAAATTTAATTGAATAATTATCTTAGATAAGT
Found at i:56023013 original size:9 final size:9
Alignment explanation
Indices: 56022999--56023084 Score: 84
Period size: 9 Copynumber: 9.4 Consensus size: 9
56022989 TTTGGTTAAA
56022999 AATTACCCG
1 AATTACCCG
*
56023008 AATTACCTG
1 AATTACCCG
56023017 AATTACCCG
1 AATTACCCG
*
56023026 AATTACCTG
1 AATTACCCG
* *
56023035 AATTAACCA
1 AATTACCCG
*
56023044 AATTAACCG
1 AATTACCCG
56023053 AATTA-CCG
1 AATTACCCG
*
56023061 AAAAATACCCG
1 --AATTACCCG
*
56023072 AATTACCCA
1 AATTACCCG
56023081 AATT
1 AATT
56023085 TTTTTTTACG
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
8 3 0.05
9 54 0.84
10 4 0.06
11 3 0.05
ACGTcount: A:0.42, C:0.26, G:0.08, T:0.24
Consensus pattern (9 bp):
AATTACCCG
Found at i:56035038 original size:18 final size:18
Alignment explanation
Indices: 56035011--56035050 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
56035001 ACTGTTGTTC
*
56035011 AGAA-TTGTTGCTGTAGA
1 AGAAGTTGTTGCTGAAGA
56035028 AGAAGTTGTTGCTGAAGA
1 AGAAGTTGTTGCTGAAGA
56035046 AGAAG
1 AGAAG
56035051 AAGTTGTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.35, C:0.05, G:0.33, T:0.28
Consensus pattern (18 bp):
AGAAGTTGTTGCTGAAGA
Found at i:56035056 original size:18 final size:18
Alignment explanation
Indices: 56035017--56035061 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
56035007 GTTCAGAATT
* **
56035017 GTTGCTGTAGAAGAAGTT
1 GTTGCTGAAGAAGAAGAA
56035035 GTTGCTGAAGAAGAAGAA
1 GTTGCTGAAGAAGAAGAA
*
56035053 GTTGTTGAA
1 GTTGCTGAA
56035062 AATGAAAATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.33, T:0.29
Consensus pattern (18 bp):
GTTGCTGAAGAAGAAGAA
Found at i:56046287 original size:20 final size:20
Alignment explanation
Indices: 56046262--56046315 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
56046252 TTAACCCTTC
56046262 CATTTACTTACTTTCCATTG
1 CATTTACTTACTTTCCATTG
56046282 CATTTACTTACTTTCCATTG
1 CATTTACTTACTTTCCATTG
*
56046302 TATTTACTTACTTT
1 CATTTACTTACTTT
56046316 AGCTTAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.20, C:0.22, G:0.04, T:0.54
Consensus pattern (20 bp):
CATTTACTTACTTTCCATTG
Found at i:56060123 original size:7 final size:7
Alignment explanation
Indices: 56060092--56060133 Score: 57
Period size: 7 Copynumber: 5.6 Consensus size: 7
56060082 GGAGGAAAAG
56060092 AAATGAAA
1 AAAT-AAA
56060100 AAATAATA
1 AAATAA-A
56060108 AAATGAAA
1 AAAT-AAA
56060116 AAATAAA
1 AAATAAA
56060123 AAATAAA
1 AAATAAA
56060130 AAAT
1 AAAT
56060134 GTAAAGCAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 16 0.50
8 14 0.44
9 2 0.06
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.17
Consensus pattern (7 bp):
AAATAAA
Found at i:56060138 original size:16 final size:16
Alignment explanation
Indices: 56060092--56060133 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
56060082 GGAGGAAAAG
56060092 AAATGAAAAAATAATA
1 AAATGAAAAAATAATA
56060108 AAATGAAAAAATAA-A
1 AAATGAAAAAATAATA
56060123 AAAT-AAAAAAT
1 AAATGAAAAAAT
56060134 GTAAAGCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.27
15 5 0.19
16 14 0.54
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.17
Consensus pattern (16 bp):
AAATGAAAAAATAATA
Found at i:56060676 original size:18 final size:18
Alignment explanation
Indices: 56060641--56060683 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
56060631 GTTGGGTTCT
*
56060641 GAAATAAAAATAAATTAA
1 GAAATAAAAACAAATTAA
*
56060659 -AAATTAAAACAAATTTAA
1 GAAATAAAAACAAA-TTAA
56060677 GAAATAA
1 GAAATAA
56060684 TTTCACAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
17 11 0.55
18 4 0.20
19 5 0.25
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (18 bp):
GAAATAAAAACAAATTAA
Found at i:56065548 original size:34 final size:34
Alignment explanation
Indices: 56065505--56065584 Score: 128
Period size: 34 Copynumber: 2.4 Consensus size: 34
56065495 ACTCTACATT
*
56065505 GCTTAATCAATCTTCCATGATCTCCAATTCGTCC
1 GCTTAATCAAGCTTCCATGATCTCCAATTCGTCC
56065539 GCTTAATCAAGCTTCCATGATCTCCAATTCGT-C
1 GCTTAATCAAGCTTCCATGATCTCCAATTCGTCC
*
56065572 -CTTGATCAAGCTT
1 GCTTAATCAAGCTT
56065585 GGAACTTCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
32 12 0.27
33 1 0.02
34 31 0.70
ACGTcount: A:0.24, C:0.30, G:0.11, T:0.35
Consensus pattern (34 bp):
GCTTAATCAAGCTTCCATGATCTCCAATTCGTCC
Found at i:56072861 original size:228 final size:228
Alignment explanation
Indices: 56072464--56072920 Score: 905
Period size: 228 Copynumber: 2.0 Consensus size: 228
56072454 TCTCGTTACA
56072464 TCTCATGGTCTAAATATAGTTGCTACACTAACTGCTAAAGACTATCACCTTCGCCAAAATTAACA
1 TCTCATGGTCTAAATATAGTTGCTACACTAACTGCTAAAGACTATCACCTTCGCCAAAATTAACA
56072529 GCAGTACGGAGTAAGTTCTCTTGTTCTTGAATTTTAGCAGCCTGCCCCTTGTCTAGAGTAGGAAG
66 GCAGTACGGAGTAAGTTCTCTTGTTCTTGAATTTTAGCAGCCTGCCCCTTGTCTAGAGTAGGAAG
*
56072594 AATGGCTGGCCCTTGGCGAGAGCAAAAACAATATGCTTTGCGGGTATCAGCTAATACTTTCTCAG
131 AATGGCTGGCCCTTGGCGAGAGAAAAAACAATATGCTTTGCGGGTATCAGCTAATACTTTCTCAG
56072659 CACTTTCACATGCAGCCGCAATCATATCAATTC
196 CACTTTCACATGCAGCCGCAATCATATCAATTC
56072692 TCTCATGGTCTAAATATAGTTGCTACACTAACTGCTAAAGACTATCACCTTCGCCAAAATTAACA
1 TCTCATGGTCTAAATATAGTTGCTACACTAACTGCTAAAGACTATCACCTTCGCCAAAATTAACA
56072757 GCAGTACGGAGTAAGTTCTCTTGTTCTTGAATTTTAGCAGCCTGCCCCTTGTCTAGAGTAGGAAG
66 GCAGTACGGAGTAAGTTCTCTTGTTCTTGAATTTTAGCAGCCTGCCCCTTGTCTAGAGTAGGAAG
56072822 AATGGCTGGCCCTTGGCGAGAGAAAAAACAATATGCTTTGCGGGTATCAGCTAATACTTTCTCAG
131 AATGGCTGGCCCTTGGCGAGAGAAAAAACAATATGCTTTGCGGGTATCAGCTAATACTTTCTCAG
56072887 CACTTTCACATGCAGCCGCAATCATATCAATTC
196 CACTTTCACATGCAGCCGCAATCATATCAATTC
56072920 T
1 T
56072921 AGCCTGTAAA
Statistics
Matches: 228, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
228 228 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (228 bp):
TCTCATGGTCTAAATATAGTTGCTACACTAACTGCTAAAGACTATCACCTTCGCCAAAATTAACA
GCAGTACGGAGTAAGTTCTCTTGTTCTTGAATTTTAGCAGCCTGCCCCTTGTCTAGAGTAGGAAG
AATGGCTGGCCCTTGGCGAGAGAAAAAACAATATGCTTTGCGGGTATCAGCTAATACTTTCTCAG
CACTTTCACATGCAGCCGCAATCATATCAATTC
Found at i:56074188 original size:21 final size:21
Alignment explanation
Indices: 56074131--56074195 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
56074121 ATATAATATT
*
56074131 AATTTAGTTATAATTTAAAAA
1 AATTTAATTATAATTTAAAAA
* * *
56074152 AATAATT-ATTAAAATTTACAAC
1 AAT--TTAATTATAATTTAAAAA
*
56074174 AATTTAATTATAATTTTAAAA
1 AATTTAATTATAATTTAAAAA
56074195 A
1 A
56074196 TTCAAAGAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
20 2 0.06
21 15 0.45
22 14 0.42
23 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.42
Consensus pattern (21 bp):
AATTTAATTATAATTTAAAAA
Found at i:56074248 original size:20 final size:19
Alignment explanation
Indices: 56074212--56074262 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
56074202 GAAATATATA
*
56074212 AAAATATCTA-AATATTTT
1 AAAATATATATAATATTTT
*
56074230 CAAATATATATAATAATTTT
1 AAAATATATATAAT-ATTTT
*
56074250 AAAAAATATATAA
1 AAAATATATATAA
56074263 AAATAAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 8 0.30
19 3 0.11
20 16 0.59
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAATATATATAATATTTT
Found at i:56074325 original size:50 final size:49
Alignment explanation
Indices: 56074203--56074305 Score: 143
Period size: 50 Copynumber: 2.0 Consensus size: 49
56074193 AAATTCAAAG
** *
56074203 AAATATATAAAAATATCTAAATATTTTCAAATATATATAATAATTTTAAA
1 AAATATATAAAAATAAATAAATATTTTCAAATATATATAATAAATTT-AA
56074253 AAATATATAAAAATAAATAAATATTTTCAAAATATTATAATAATAAATTTAA
1 AAATATATAAAAATAAATAAATATTTTC-AAATA-TAT-ATAATAAATTTAA
56074305 A
1 A
56074306 TTTTATATTA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
50 26 0.55
51 5 0.11
52 6 0.13
53 10 0.21
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (49 bp):
AAATATATAAAAATAAATAAATATTTTCAAATATATATAATAAATTTAA
Found at i:56074519 original size:15 final size:15
Alignment explanation
Indices: 56074501--56074531 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
56074491 TGCAAAACTT
56074501 GGGCTTGGAAAAAGA
1 GGGCTTGGAAAAAGA
56074516 GGGCTTGGAAAAAGA
1 GGGCTTGGAAAAAGA
56074531 G
1 G
56074532 ATGATTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.42, T:0.13
Consensus pattern (15 bp):
GGGCTTGGAAAAAGA
Found at i:56079024 original size:24 final size:23
Alignment explanation
Indices: 56078991--56079048 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
56078981 AGTTGAAAAG
56078991 TATAA-AATAAAATAAATAATGATA
1 TATAATAATAAAAT-AAT-ATGATA
*
56079015 -ATAATAATAAAATGATATGATA
1 TATAATAATAAAATAATATGATA
56079037 TATATATAATAA
1 TATA-ATAATAA
56079049 TGTTTGATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 6 0.20
23 9 0.30
24 15 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TATAATAATAAAATAATATGATA
Found at i:56079401 original size:49 final size:48
Alignment explanation
Indices: 56079319--56079476 Score: 273
Period size: 49 Copynumber: 3.2 Consensus size: 48
56079309 CTTACTTTGA
*
56079319 GAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
56079366 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
56079415 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
56079464 GAATGTGATAAGT
1 GAATGTGA-AAGT
56079477 CCCGAAGGGC
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 13 0.12
49 89 0.84
50 4 0.04
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (48 bp):
GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:56079650 original size:37 final size:37
Alignment explanation
Indices: 56079594--56079672 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
56079584 CCGAGCTCTA
* * *
56079594 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
56079631 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
56079668 AAGAC
1 AAGAC
56079673 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:56083198 original size:49 final size:49
Alignment explanation
Indices: 56083138--56083428 Score: 259
Period size: 49 Copynumber: 5.8 Consensus size: 49
56083128 AATAATAACA
* *
56083138 TGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATGTTTTCTGTAC
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATGTTATCTGTAC
*
56083187 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATGTTTTCTGTAC
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATGTTATCTGTAC
* * * * **
56083236 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGA-GTTCTCATATTGG
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATGTTATC-T-GTAC
* * ** * * *
56083286 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCG--G
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA--TGTTATCT-GTAC
* * *
56083336 TG-CAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAATCT-TAA
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA--TGT--T-ATCTGTAC
56083388 TGATTCCAATGCCATGTCCTAGACATGGTCTTACATGGGAT
1 TG---CCAATGCCATGTCCTAGACATGGTCTTACATGGGAT
56083429 CTCTTTACCC
Statistics
Matches: 202, Mismatches: 26, Indels: 23
0.80 0.10 0.09
Matches are distributed among these distances:
48 5 0.02
49 118 0.58
50 35 0.17
52 7 0.03
53 3 0.01
54 1 0.00
56 33 0.16
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (49 bp):
TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATGTTATCTGTAC
Found at i:56090671 original size:177 final size:177
Alignment explanation
Indices: 56090375--56090724 Score: 700
Period size: 177 Copynumber: 2.0 Consensus size: 177
56090365 ATAAAAAGAA
56090375 ATAAAAGAAGTAAGCATAAAGCTTAGTAAGTTTACAAGTAAATAAATAACAACATTTAACATAAA
1 ATAAAAGAAGTAAGCATAAAGCTTAGTAAGTTTACAAGTAAATAAATAACAACATTTAACATAAA
56090440 TAATGATATGCAAGTATCATGTTCTTAAGTTTCCTCTTTACTTACTCTTATTTACTTGTTTATTT
66 TAATGATATGCAAGTATCATGTTCTTAAGTTTCCTCTTTACTTACTCTTATTTACTTGTTTATTT
56090505 ACTTACCTATTTAGATTACAACTTACTCTTCTCTTGCTGAAATTTTG
131 ACTTACCTATTTAGATTACAACTTACTCTTCTCTTGCTGAAATTTTG
56090552 ATAAAAGAAGTAAGCATAAAGCTTAGTAAGTTTACAAGTAAATAAATAACAACATTTAACATAAA
1 ATAAAAGAAGTAAGCATAAAGCTTAGTAAGTTTACAAGTAAATAAATAACAACATTTAACATAAA
56090617 TAATGATATGCAAGTATCATGTTCTTAAGTTTCCTCTTTACTTACTCTTATTTACTTGTTTATTT
66 TAATGATATGCAAGTATCATGTTCTTAAGTTTCCTCTTTACTTACTCTTATTTACTTGTTTATTT
56090682 ACTTACCTATTTAGATTACAACTTACTCTTCTCTTGCTGAAAT
131 ACTTACCTATTTAGATTACAACTTACTCTTCTCTTGCTGAAAT
56090725 ATTGGTTCTC
Statistics
Matches: 173, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
177 173 1.00
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (177 bp):
ATAAAAGAAGTAAGCATAAAGCTTAGTAAGTTTACAAGTAAATAAATAACAACATTTAACATAAA
TAATGATATGCAAGTATCATGTTCTTAAGTTTCCTCTTTACTTACTCTTATTTACTTGTTTATTT
ACTTACCTATTTAGATTACAACTTACTCTTCTCTTGCTGAAATTTTG
Found at i:56091016 original size:50 final size:50
Alignment explanation
Indices: 56090888--56091175 Score: 294
Period size: 50 Copynumber: 5.8 Consensus size: 50
56090878 GATAATAACA
* * * ** * * *
56090888 TGCCAAAGCCATGTCCCGGACATGGTCTTACATAGGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * ** *
56090937 TGCCAATGCCATATCCCAGATATGATCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * ***
56090987 TGCCCATGCCATGTCCAAGACATGGTCTTATGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * * *
56091037 TGCTAACGCCATGT-CCAGACATGGTCTTACATGGGACCTGTTATCTAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
56091086 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTTATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
56091136 TGCCAACGCCATGTCCCAGACATGGTCTTACATAGGACCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCT
56091176 TTTTACCCAA
Statistics
Matches: 196, Mismatches: 40, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
48 1 0.01
49 76 0.39
50 119 0.61
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:56091066 original size:99 final size:100
Alignment explanation
Indices: 56090937--56091175 Score: 302
Period size: 99 Copynumber: 2.4 Consensus size: 100
56090927 TTTCTTGTAC
* * * * ** * *
56090937 TGCCAATGCCATATCCCAGATATGATCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGT-
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAATGCCATGTC
**
56091001 CCAAGACATGGTCTTATGGGGGACCTCTCATCTCGG
66 CCAA-ACATGGTCTTACAGGGGACCTCTCATCTCGG
* * * *
56091037 TGCTAACGCCATGT-CCAGACATGGTCTTACATGGGACCTGTTATCTAGGTGCCAATGCCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAATGCCATGTC
* *
56091101 CCAAACATGGTCTTACATGGGACCTCTTATCTCGG
66 CCAAACATGGTCTTACAGGGGACCTCTCATCTCGG
*
56091136 TGCCAACGCCATGTCCCAGACATGGTCTTACATAGGACCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCT
56091176 TTTTACCCAA
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
99 80 0.67
100 39 0.33
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (100 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAATGCCATGTC
CCAAACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:56091165 original size:149 final size:148
Alignment explanation
Indices: 56090895--56091165 Score: 357
Period size: 149 Copynumber: 1.8 Consensus size: 148
56090885 ACATGCCAAA
* * * *
56090895 GCCATGTCCCGGACATGGTCTTACATAGGATGTTTCTTGTACTGCCAATGCCATATCCCAGATAT
1 GCCATGTCCCAGACATGGTCTTACATAGGATGTTTCTAG-ACTGCCAATGCCATATCCCAAACAT
** * *
56090960 GATCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCAAGACATGGTCTTATGGGGGAC
65 GATCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCAAGACATGGTCTTATGGGGGAC
56091025 CTCTCATCTCGGTGCTAAC
130 CTCTCATCTCGGTGCTAAC
* * *
56091044 GCCATGT-CCAGACATGGTCTTACATGGGACCTGTTATCTAG-GTGCCAATGCCATGTCCCAAAC
1 GCCATGTCCCAGACATGGTCTTACATAGGA--TGTT-TCTAGACTGCCAATGCCATATCCCAAAC
* * * *
56091107 ATGGTCTTACATGGGACCTCTTATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTA
63 ATGATCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCAAGACATGGTCTTA
56091166 CATAGGACCT
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
148 20 0.19
149 76 0.73
150 4 0.04
151 4 0.04
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (148 bp):
GCCATGTCCCAGACATGGTCTTACATAGGATGTTTCTAGACTGCCAATGCCATATCCCAAACATG
ATCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCAAGACATGGTCTTATGGGGGACC
TCTCATCTCGGTGCTAAC
Found at i:56097496 original size:49 final size:50
Alignment explanation
Indices: 56097437--56097565 Score: 156
Period size: 49 Copynumber: 2.6 Consensus size: 50
56097427 ATAATAACAT
*
56097437 GCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TC-T-TGTACA
1 GCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-TACA
* * ***
56097486 GCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGGT
1 GCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATTACA
*
56097536 GCCCATGCCATGTCCCAGACATGGTCTTAC
1 GCCAATGCCATGTCCCAGACATGGTCTTAC
56097566 GGGGGACCTC
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
48 3 0.04
49 35 0.51
50 29 0.43
51 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (50 bp):
GCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATTACA
Found at i:56097560 original size:50 final size:49
Alignment explanation
Indices: 56097436--56097604 Score: 171
Period size: 50 Copynumber: 3.4 Consensus size: 49
56097426 GATAATAACA
* **
56097436 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TC-TTGTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATT-TGG
* * *
56097485 AGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCAT-TTGG
* ** ** *
56097535 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCAT-TTGG
*
56097585 TGCCAACGCCATGTCCCAGA
1 TGCCAATGCCATGTCCCAGA
56097605 NNNNNNNNNN
Statistics
Matches: 99, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
48 3 0.03
49 35 0.35
50 60 0.61
51 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATTTGG
Done.