Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 185 of 187
Found at i:56841078 original size:46 final size:46
Alignment explanation
Indices: 56841026--56841115 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 46
56841016 GAAGGAAATA
* *
56841026 AAAACCTAATATAATAGAGAAAATAAGTAAAACTAAAACTCTTAAT
1 AAAACCTAATATAATAAAGAAAATAAATAAAACTAAAACTCTTAAT
* *
56841072 AAAACCTGATATAGTAAAGAAAATAAATAAAACTAAAACTCTTA
1 AAAACCTAATATAATAAAGAAAATAAATAAAACTAAAACTCTTA
56841116 TTGCAATAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.23
Consensus pattern (46 bp):
AAAACCTAATATAATAAAGAAAATAAATAAAACTAAAACTCTTAAT
Found at i:56853342 original size:74 final size:75
Alignment explanation
Indices: 56853193--56853361 Score: 259
Period size: 74 Copynumber: 2.3 Consensus size: 75
56853183 AAGGAAAACC
* * * *
56853193 ATGATTATTCTCTTATTAATAGAGAAGGCAAATGGAAATTTAGAAAAATGAAGTATATTCTTTCC
1 ATGATTATTCCCTTATTAATAGAGAAGGAAAATGGAAAGTTAGAAAAATAAAGTATATTCTTTCC
56853258 AAAAGAATAT
66 AAAAGAATAT
* *
56853268 ATGATTATTCCCTTTTTAATAGAGAAGGAAAAT-GAAAGTTAGAAAAATAAATTATATTCTTTCC
1 ATGATTATTCCCTTATTAATAGAGAAGGAAAATGGAAAGTTAGAAAAATAAAGTATATTCTTTCC
*
56853332 AAAAGGATAT
66 AAAAGAATAT
*
56853342 AGGATTATTCCCTTATTAAT
1 ATGATTATTCCCTTATTAAT
56853362 TTTGTAAAAT
Statistics
Matches: 85, Mismatches: 9, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
74 55 0.65
75 30 0.35
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.35
Consensus pattern (75 bp):
ATGATTATTCCCTTATTAATAGAGAAGGAAAATGGAAAGTTAGAAAAATAAAGTATATTCTTTCC
AAAAGAATAT
Found at i:56860051 original size:43 final size:43
Alignment explanation
Indices: 56859990--56860076 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
56859980 AGAAAAAGAT
56859990 AGAATTTTTCACACTACAGGGGTCACAGAGCCGTGTGACTCAC
1 AGAATTTTTCACACTACAGGGGTCACAGAGCCGTGTGACTCAC
56860033 AGAATTTTTCACACTACAGGGGTCACAGAGCCGTGTGACTCAC
1 AGAATTTTTCACACTACAGGGGTCACAGAGCCGTGTGACTCAC
56860076 A
1 A
56860077 CGGCTGAGAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (43 bp):
AGAATTTTTCACACTACAGGGGTCACAGAGCCGTGTGACTCAC
Found at i:56862503 original size:12 final size:12
Alignment explanation
Indices: 56862480--56862513 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
56862470 TATATATTTT
56862480 AAAATT-ATATA
1 AAAATTAATATA
56862491 AAAATTAATATA
1 AAAATTAATATA
56862503 AAAATTAATAT
1 AAAATTAATAT
56862514 GGGTAGGTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 6 0.27
12 16 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:56865059 original size:50 final size:50
Alignment explanation
Indices: 56864951--56865197 Score: 210
Period size: 50 Copynumber: 4.8 Consensus size: 50
56864941 ATTTGGGTAA
* * *
56864951 AGAGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGAGGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-G--ATG
* *
56865007 AGAGGTCCCATGTAAGCCCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
56865057 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * * * *
56865107 AGAACTCCCATGTAAGACCATATCTGGGATATGTCATTGG-A-AGTACAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** * *
56865156 AAACATCCTATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
56865198 TGTTATTATC
Statistics
Matches: 157, Mismatches: 32, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
49 36 0.23
50 79 0.50
52 1 0.01
53 2 0.01
55 1 0.01
56 38 0.24
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:56866799 original size:69 final size:69
Alignment explanation
Indices: 56866683--56866818 Score: 209
Period size: 69 Copynumber: 2.0 Consensus size: 69
56866673 ACTAAAATAG
*
56866683 AATCCATTAATTTTCACTTTGTTTCTCTAGATAACAATGTATCAGCTCTTCTAGATCCTTGTACC
1 AATCCATTAATTATCACTTTGTTTCTCTAGATAACAATGTATCAGCTCTTCTAGATCCTTGTACC
56866748 ACAT
66 ACAT
* * * * * *
56866752 AATCCATTAATTATCACTTTGTTTCTTTGGATAATAATGTATTAGCTCTTTTGGATCCTTGTACC
1 AATCCATTAATTATCACTTTGTTTCTCTAGATAACAATGTATCAGCTCTTCTAGATCCTTGTACC
56866817 AC
66 AC
56866819 GAAAGATTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 60 1.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (69 bp):
AATCCATTAATTATCACTTTGTTTCTCTAGATAACAATGTATCAGCTCTTCTAGATCCTTGTACC
ACAT
Found at i:56870722 original size:44 final size:44
Alignment explanation
Indices: 56870661--56870914 Score: 126
Period size: 44 Copynumber: 5.5 Consensus size: 44
56870651 ATCTACTCTG
* * *
56870661 CTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTTAATCCGCTCCA
1 CTGTAATC-TCAGAGAGATAAGAT--TATTAGCTTCAATCAGCTCCA
* * *
56870705 CTGTAATCTCAGTGAGATAGGATTATTAGCTTCAATCAGCTCCG
1 CTGTAATCTCAGAGAGATAAGATTATTAGCTTCAATCAGCTCCA
*
56870749 CTGTAATCTCAGGGAGATAAGATT-TCT-GACTTCAATCTGATGCGATCTACTCTA
1 CTGTAATCTCAGAGAGATAAGATTAT-TAG-CTTCAATC--A---G--CT-C-C-A
* ** * ** *
56870803 CTGTAA-CTTCAAAGAGATAAGATCCTCCATTTTC-ATCCGCTCCA
1 CTGTAATC-TCAGAGAGATAAGATTAT-TAGCTTCAATCAGCTCCA
* * * * *
56870847 CTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCG
1 CTGTAATCTCAGAGAGATAAGATTATTAGCTTCAATCAGCTCCA
*
56870891 CTGTAATCTCAGGGAGATAAGATT
1 CTGTAATCTCAGAGAGATAAGATT
56870915 TCTGGCGTCC
Statistics
Matches: 162, Mismatches: 28, Indels: 40
0.70 0.12 0.17
Matches are distributed among these distances:
42 1 0.01
43 9 0.06
44 111 0.69
45 3 0.02
46 2 0.01
47 2 0.01
49 2 0.01
51 2 0.01
52 1 0.01
53 2 0.01
54 22 0.14
55 5 0.03
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (44 bp):
CTGTAATCTCAGAGAGATAAGATTATTAGCTTCAATCAGCTCCA
Found at i:56870899 original size:142 final size:142
Alignment explanation
Indices: 56870643--56871349 Score: 1155
Period size: 142 Copynumber: 5.0 Consensus size: 142
56870633 GAGATAAGAC
** **
56870643 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTATTGTAACTTCAGAGAGATAAGATCCTCCATTTTAATCCGCTCCACTG
* * *
56870708 TAATCTCAGTGAGATAGGATTATTAGCTTCAATCAGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
* *
56870773 TCTGACTTCAAT
131 TCTGGCTTCCAT
* * *
56870785 CTGATGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTCCATTTTCATCCGCTCCACTG
1 CTGATGCGATCTACTCTATTGTAACTTCAGAGAGATAAGATCCTCCATTTTAATCCGCTCCACTG
56870850 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
*
56870915 TCTGGCGTCCAT
131 TCTGGCTTCCAT
56870927 CTGATGCGATCTACTCTATTGTAACTTCAGAGAGATAAGATCCTCCATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTATTGTAACTTCAGAGAGATAAGATCCTCCATTTTAATCCGCTCCACTG
* * *
56870992 TAATCTCAGGGGGGATAGGATTACTAGCTTCAATTTGCTCTGCTGTAATCTCAGGGA-ATTAAGA
66 TAATCTCA-GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA-TAAGA
56871056 TTTCTGGCTTCCAT
129 TTTCTGGCTTCCAT
56871070 CTGATGCGATCTACTCTATTGTAACTTCAGAGAGATAAGATCCTCCATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTATTGTAACTTCAGAGAGATAAGATCCTCCATTTTAATCCGCTCCACTG
* *
56871135 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATATGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
56871200 TCTGGCTTCCAT
131 TCTGGCTTCCAT
* * * *
56871212 CTAATGCGATCTACTCTGTTGTAACTTCAGAGAGATAAAATCCTCTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTATTGTAACTTCAGAGAGATAAGATCCTCCATTTTAATCCGCTCCACTG
* * *
56871277 TAATCTCAGGGAGATAAGATTGCTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATC
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
*
56871342 TGTGGCTT
131 TCTGGCTT
56871350 AAATCTGTTT
Statistics
Matches: 529, Mismatches: 33, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
142 392 0.74
143 137 0.26
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (142 bp):
CTGATGCGATCTACTCTATTGTAACTTCAGAGAGATAAGATCCTCCATTTTAATCCGCTCCACTG
TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
TCTGGCTTCCAT
Found at i:56870929 original size:44 final size:44
Alignment explanation
Indices: 56870836--56870929 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
56870826 CCTCCATTTT
* * *
56870836 CATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 CATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCGTC
* * * *
56870880 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCGTC
1 CATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCGTC
56870924 CATCTG
1 CATCTG
56870930 ATGCGATCTA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (44 bp):
CATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCGTC
Found at i:56871149 original size:44 final size:44
Alignment explanation
Indices: 56871096--56871341 Score: 142
Period size: 44 Copynumber: 5.4 Consensus size: 44
56871086 TATTGTAACT
* * * *
56871096 TCAGAGAGATAAGATCCTCCATTTTAATCCGCTCCACTGTAATC
1 TCAGGGAGATAAGATCCTCTACTTTAATCCGCTCCGCTGTAATC
* * * *
56871140 TCAGGGAGATAGGAT--TACTAGCTTCAATCTGCTCCGCTATAATC
1 TCAGGGAGATAAGATCCT-CTA-CTTTAATCCGCTCCGCTGTAATC
* * * * * *
56871184 TCAGGGAGATATGATTTCTGGCTTCCATCTAATGCGATCTACTCTGTTGTAA-C
1 TCAGGGAGATAAGA-TCCT--C-TAC-TTTAATCCG--CT-C-C-GCTGTAATC
* * * *
56871237 TTCAGAGAGATAAAATCCTCTATTTTAATCCGCTCCACTGTAATC
1 -TCAGGGAGATAAGATCCTCTACTTTAATCCGCTCCGCTGTAATC
* *
56871282 TCAGGGAGATAAGAT--TGCTAGCTTCAATCTGCTCCGCTGTAATC
1 TCAGGGAGATAAGATCCT-CTA-CTTTAATCCGCTCCGCTGTAATC
56871326 TCAGGGAGATAAGATC
1 TCAGGGAGATAAGATC
56871342 TGTGGCTTAA
Statistics
Matches: 151, Mismatches: 33, Indels: 35
0.69 0.15 0.16
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
44 96 0.64
45 3 0.02
46 1 0.01
47 3 0.02
48 2 0.01
49 13 0.09
50 1 0.01
51 3 0.02
52 1 0.01
53 5 0.03
54 16 0.11
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
TCAGGGAGATAAGATCCTCTACTTTAATCCGCTCCGCTGTAATC
Found at i:56871152 original size:285 final size:284
Alignment explanation
Indices: 56870643--56871356 Score: 1178
Period size: 285 Copynumber: 2.5 Consensus size: 284
56870633 GAGATAAGAC
* *
56870643 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTGTTGTAACTTCAGAGAGATAAGATCCTCTATTTTAATCCGCTCCACTG
* * *
56870708 TAATCTCAGTGAGATAGGATTATTAGCTTCAATCAGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
* *
56870773 TCTGACTTCAATCTGATGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTCCATTTTCA
131 TCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTCCATTTTAA
*
56870838 TCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAG
196 TCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAG
56870903 GGAGATAAGATTTCTGGCGTCCAT
261 GGAGATAAGATTTCTGGCGTCCAT
* *
56870927 CTGATGCGATCTACTCTATTGTAACTTCAGAGAGATAAGATCCTCCATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTGTTGTAACTTCAGAGAGATAAGATCCTCTATTTTAATCCGCTCCACTG
* * *
56870992 TAATCTCAGGGGGGATAGGATTACTAGCTTCAATTTGCTCTGCTGTAATCTCAGGGA-ATTAAGA
66 TAATCTCA-GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA-TAAGA
* * *
56871056 TTTCTGGCTTCCATCTGATGCGATCTACTCTATTGTAACTTCAGAGAGATAAGATCCTCCATTTT
129 TTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTCCATTTT
56871121 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTC
194 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTC
* *
56871186 AGGGAGATATGATTTCTGGCTTCCAT
259 AGGGAGATAAGATTTCTGGCGTCCAT
* *
56871212 CTAATGCGATCTACTCTGTTGTAACTTCAGAGAGATAAAATCCTCTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTGTTGTAACTTCAGAGAGATAAGATCCTCTATTTTAATCCGCTCCACTG
* * *
56871277 TAATCTCAGGGAGATAAGATTGCTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATC
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
* *
56871342 TGTGGCTTAAATCTG
131 TCTGGCTTCAATCTG
56871357 TTTCCTTACA
Statistics
Matches: 396, Mismatches: 31, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
284 131 0.33
285 265 0.67
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (284 bp):
CTGATGCGATCTACTCTGTTGTAACTTCAGAGAGATAAGATCCTCTATTTTAATCCGCTCCACTG
TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
TCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTCCATTTTAA
TCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAG
GGAGATAAGATTTCTGGCGTCCAT
Found at i:56871355 original size:44 final size:44
Alignment explanation
Indices: 56871263--56871356 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 44
56871253 CCTCTATTTT
* *
56871263 AATCCGCTCCACTGTAATCTCAGGGAGATAAGATTGCTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTGCTAGCTTA
* *
56871307 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTG-TGGCTTA
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TGCTAGCTTA
56871351 AATCTG
1 AATCTG
56871357 TTTCCTTACA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 43 0.96
45 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTGCTAGCTTA
Found at i:56884623 original size:662 final size:662
Alignment explanation
Indices: 56883360--56884683 Score: 2630
Period size: 662 Copynumber: 2.0 Consensus size: 662
56883350 GCGAGTTTTA
56883360 TGTATATTGATTAAAGAAAACTTTCGATTATTTGGATTCAACGAGGAAAATTGGAACCCAATACA
1 TGTATATTGATTAAAGAAAACTTTCGATTATTTGGATTCAACGAGGAAAATTGGAACCCAATACA
56883425 TTAGGGCTCAATTTTCTTGAAAATCATAAATACTAGGCTTTTTTTATATGAAATAGCATGACAAA
66 TTAGGGCTCAATTTTCTTGAAAATCATAAATACTAGGCTTTTTTTATATGAAATAGCATGACAAA
56883490 GGTGCAAAGTTTGATAACGTAATGTAAAACGATGAATGATAATTCAAACATAAACTAAGATGTAG
131 GGTGCAAAGTTTGATAACGTAATGTAAAACGATGAATGATAATTCAAACATAAACTAAGATGTAG
56883555 TCAAATGAGCAACAAATAAATACAAATGCAATGGCAACAATAATTTACTCACATTATACAATATC
196 TCAAATGAGCAACAAATAAATACAAATGCAATGGCAACAATAATTTACTCACATTATACAATATC
56883620 TAAATATATAATTATGTCTAATCTACCACAATGCGTATTAATAAATGATAAAATTTACAACCATA
261 TAAATATATAATTATGTCTAATCTACCACAATGCGTATTAATAAATGATAAAATTTACAACCATA
*
56883685 TGGAAAATTAAAAAGGGTATATATATATGTAAAAAAATGATATAATATTTAATGAGTTTAGGATG
326 TGGAAAATTAAAAAGGGTATATATATATGTAAAAAAATGAAATAATATTTAATGAGTTTAGGATG
56883750 TATTTAAATATAATAATTTGAAGGGATTTAGGTATCATTTTTAAAATATATATGCATTAAAAGCA
391 TATTTAAATATAATAATTTGAAGGGATTTAGGTATCATTTTTAAAATATATATGCATTAAAAGCA
56883815 AATTTGAAAGTAGTATTAAGCTAAAAATTTAAAATAATACTAGAAATAATGAATATAAAGTTGAT
456 AATTTGAAAGTAGTATTAAGCTAAAAATTTAAAATAATACTAGAAATAATGAATATAAAGTTGAT
56883880 TCATAAAAACTTTTGAAATCGAATTTTATTATGTAAAGAACCCCTTTTTTTATAATTGAAAACAA
521 TCATAAAAACTTTTGAAATCGAATTTTATTATGTAAAGAACCCCTTTTTTTATAATTGAAAACAA
56883945 TAATTAATGGATTTTAAATCAAAATTTAATTAAAATTAAAAAAAAAGAAAAGAAAATAATAAACC
586 TAATTAATGGATTTTAAATCAAAATTTAATTAAAATTAAAAAAAAAGAAAAGAAAATAATAAACC
56884010 CCAAATATTAGT
651 CCAAATATTAGT
56884022 TGTATATTGATTAAAGAAAACTTTCGATTATTTGGATTCAACGAGGAAAATTGGAACCCAATACA
1 TGTATATTGATTAAAGAAAACTTTCGATTATTTGGATTCAACGAGGAAAATTGGAACCCAATACA
56884087 TTAGGGCTCAATTTTCTTGAAAATCATAAATACTAGGCTTTTTTTATATGAAATAGCATGACAAA
66 TTAGGGCTCAATTTTCTTGAAAATCATAAATACTAGGCTTTTTTTATATGAAATAGCATGACAAA
56884152 GGTGCAAAGTTTGATAACGTAATGTAAAACGATGAATGATAATTCAAACATAAACTAAGATGTAG
131 GGTGCAAAGTTTGATAACGTAATGTAAAACGATGAATGATAATTCAAACATAAACTAAGATGTAG
56884217 TCAAATGAGCAACAAATAAATACAAATGCAATGGCAACAATAATTTACTCACATTATACAATATC
196 TCAAATGAGCAACAAATAAATACAAATGCAATGGCAACAATAATTTACTCACATTATACAATATC
56884282 TAAATATATAATTATGTCTAATCTACCACAATGCGTATTAATAAATGATAAAATTTACAACCATA
261 TAAATATATAATTATGTCTAATCTACCACAATGCGTATTAATAAATGATAAAATTTACAACCATA
*
56884347 TGGCAAATTAAAAAGGGTATATATATATGTAAAAAAATGAAATAATATTTAATGAGTTTAGGATG
326 TGGAAAATTAAAAAGGGTATATATATATGTAAAAAAATGAAATAATATTTAATGAGTTTAGGATG
56884412 TATTTAAATATAATAATTTGAAGGGATTTAGGTATCATTTTTAAAATATATATGCATTAAAAGCA
391 TATTTAAATATAATAATTTGAAGGGATTTAGGTATCATTTTTAAAATATATATGCATTAAAAGCA
56884477 AATTTGAAAGTAGTATTAAGCTAAAAATTTAAAATAATACTAGAAATAATGAATATAAAGTTGAT
456 AATTTGAAAGTAGTATTAAGCTAAAAATTTAAAATAATACTAGAAATAATGAATATAAAGTTGAT
56884542 TCATAAAAACTTTTGAAATCGAATTTTATTATGTAAAGAACCCCTTTTTTTATAATTGAAAACAA
521 TCATAAAAACTTTTGAAATCGAATTTTATTATGTAAAGAACCCCTTTTTTTATAATTGAAAACAA
56884607 TAATTAATGGATTTTAAATCAAAATTTAATTAAAATTAAAAAAAAAGAAAAGAAAATAATAAACC
586 TAATTAATGGATTTTAAATCAAAATTTAATTAAAATTAAAAAAAAAGAAAAGAAAATAATAAACC
56884672 CCAAATATTAGT
651 CCAAATATTAGT
56884684 GCAAAAACGA
Statistics
Matches: 660, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
662 660 1.00
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.32
Consensus pattern (662 bp):
TGTATATTGATTAAAGAAAACTTTCGATTATTTGGATTCAACGAGGAAAATTGGAACCCAATACA
TTAGGGCTCAATTTTCTTGAAAATCATAAATACTAGGCTTTTTTTATATGAAATAGCATGACAAA
GGTGCAAAGTTTGATAACGTAATGTAAAACGATGAATGATAATTCAAACATAAACTAAGATGTAG
TCAAATGAGCAACAAATAAATACAAATGCAATGGCAACAATAATTTACTCACATTATACAATATC
TAAATATATAATTATGTCTAATCTACCACAATGCGTATTAATAAATGATAAAATTTACAACCATA
TGGAAAATTAAAAAGGGTATATATATATGTAAAAAAATGAAATAATATTTAATGAGTTTAGGATG
TATTTAAATATAATAATTTGAAGGGATTTAGGTATCATTTTTAAAATATATATGCATTAAAAGCA
AATTTGAAAGTAGTATTAAGCTAAAAATTTAAAATAATACTAGAAATAATGAATATAAAGTTGAT
TCATAAAAACTTTTGAAATCGAATTTTATTATGTAAAGAACCCCTTTTTTTATAATTGAAAACAA
TAATTAATGGATTTTAAATCAAAATTTAATTAAAATTAAAAAAAAAGAAAAGAAAATAATAAACC
CCAAATATTAGT
Found at i:56891726 original size:3 final size:3
Alignment explanation
Indices: 56891718--56891752 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
56891708 AACCGAAATC
56891718 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
56891753 GCATTCCACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:56894549 original size:50 final size:50
Alignment explanation
Indices: 56894437--56894823 Score: 331
Period size: 51 Copynumber: 7.7 Consensus size: 50
56894427 TCATTCGATA
* * *
56894437 CACGTAGTAGCCTTCACATAGTACTACACACGTGAT-TAGTTTTACAGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGCT
* *
56894486 CACGTAGTAGCCTTCACATAGTACTATACACATGATCAAGTTTTACGGCT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGCT
* * *
56894536 CCCGTAGTAGCCTTCACATGGTACTACACACGTGATCAAGTTTTACGACT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGCT
* * * *
56894586 CACGTAGTAACCTTCACATAGTACTACATACGTGACCAAAGCTTTT-TGG-T
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTTTACGGCT
* * * * * * * * *
56894636 ACCCATTGTAGCCTTCACTTAGTACTACACATGTAACCATAG-TTTACTGAT
1 -CACGTAGTAGCCTTCACATAGTACTACACACGTGATCA-AGTTTTACGGCT
* * *
56894687 ACACGTAGTAGCATTCACACAGTACTACACACGTGCTCAAAGCTTTT-CGG-T
1 -CACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTTTACGGCT
* * * * * *
56894738 ACACATAGTAGCCTTCACTTAGTACTACACATGTGA-CCATTATTTATC-GAT
1 -CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGT-TTTA-CGGCT
* *
56894789 ACACGTAGTAGCCTCCACACAGTACTACACACGTG
1 -CACGTAGTAGCCTTCACATAGTACTACACACGTG
56894824 TTCATCGACA
Statistics
Matches: 273, Mismatches: 51, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
48 1 0.00
49 41 0.15
50 92 0.34
51 129 0.47
52 7 0.03
53 3 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (50 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGCT
Found at i:56894721 original size:102 final size:103
Alignment explanation
Indices: 56894441--56894823 Score: 407
Period size: 102 Copynumber: 3.8 Consensus size: 103
56894431 TCGATACACG
* * *
56894441 TAGTAGCCTTCACATAGTACTACACACGTGA--TTAGTTTTACAG-TTCACGTAGTAGCCTTCAC
1 TAGTAGCCTTCACATAGTACTACACACGTGACCATAGTTTTACTGATACACGTAGTAGCCTTCAC
* * * * *
56894503 ATAGTACTATACACATGATC-AAG-TTTTACGGCT-CCCG
66 ACAGTACTACACACGTGACCAAAGCTTTT-CGG-TACCCA
* * *
56894540 TAGTAGCCTTCACATGGTACTACACACGTGATCA-AGTTTTAC-GACT-CACGTAGTAACCTTCA
1 TAGTAGCCTTCACATAGTACTACACACGTGACCATAGTTTTACTGA-TACACGTAGTAGCCTTCA
* * *
56894602 CATAGTACTACATACGTGACCAAAGCTTTTTGGTACCCA
65 CACAGTACTACACACGTGACCAAAGCTTTTCGGTACCCA
* * * * *
56894641 TTGTAGCCTTCACTTAGTACTACACATGTAACCATAG-TTTACTGATACACGTAGTAGCATTCAC
1 TAGTAGCCTTCACATAGTACTACACACGTGACCATAGTTTTACTGATACACGTAGTAGCCTTCAC
*
56894705 ACAGTACTACACACGTG-CTCAAAGCTTTTCGGTACACA
66 ACAGTACTACACACGTGAC-CAAAGCTTTTCGGTACCCA
* * *
56894743 TAGTAGCCTTCACTTAGTACTACACATGTGACCAT--TATTTA-TCGATACACGTAGTAGCCTCC
1 TAGTAGCCTTCACATAGTACTACACACGTGACCATAGT-TTTACT-GATACACGTAGTAGCCTTC
56894805 ACACAGTACTACACACGTG
64 ACACAGTACTACACACGTG
56894824 TTCATCGACA
Statistics
Matches: 245, Mismatches: 25, Indels: 25
0.83 0.08 0.08
Matches are distributed among these distances:
99 31 0.13
100 41 0.17
101 45 0.18
102 128 0.52
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (103 bp):
TAGTAGCCTTCACATAGTACTACACACGTGACCATAGTTTTACTGATACACGTAGTAGCCTTCAC
ACAGTACTACACACGTGACCAAAGCTTTTCGGTACCCA
Found at i:56901746 original size:23 final size:23
Alignment explanation
Indices: 56901720--56901765 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
56901710 TTGCGTCATT
56901720 TTCTTTTTAAGGAATTGTGCCTA
1 TTCTTTTTAAGGAATTGTGCCTA
56901743 TTCTTTTTAAGGAATTGTGCCTA
1 TTCTTTTTAAGGAATTGTGCCTA
56901766 ACCCTGAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.13, G:0.17, T:0.48
Consensus pattern (23 bp):
TTCTTTTTAAGGAATTGTGCCTA
Found at i:56914739 original size:20 final size:20
Alignment explanation
Indices: 56914716--56914770 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
56914706 CCCCTATTAG
56914716 CACTTCGATGCCCCTGTATA
1 CACTTCGATGCCCCTGTATA
* * * *
56914736 CACTTTGGTGTCCCTGTTTA
1 CACTTCGATGCCCCTGTATA
* *
56914756 CACATCTATGCCCCT
1 CACTTCGATGCCCCT
56914771 ATTCACACTT
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.16, C:0.35, G:0.15, T:0.35
Consensus pattern (20 bp):
CACTTCGATGCCCCTGTATA
Found at i:56924870 original size:27 final size:26
Alignment explanation
Indices: 56924820--56925343 Score: 449
Period size: 27 Copynumber: 19.6 Consensus size: 26
56924810 AAGACCATAA
* **
56924820 CAGTCATTTCATCTCCTA-GGGGTATAA
1 CAGTCATTTTA-C-CCTATGGGGTATTT
56924847 CAGTCATTTTACCCTATGGAGGTATTT
1 CAGTCATTTTACCCTATGG-GGTATTT
**
56924874 TTGTCATTTTACCCTATGGGGATATTT
1 CAGTCATTTTACCCTATGGGG-TATTT
*
56924901 TAGTCATTTTACCCTATGGAGGTATTT
1 CAGTCATTTTACCCTATGG-GGTATTT
* *
56924928 -TGATTATTTTACCCTATAGGGGTATTT
1 CAG-TCATTTTACCCTAT-GGGGTATTT
** *
56924955 TGGTCATTTTACCCTATGGGGATCTTT
1 CAGTCATTTTACCCTATGGGG-TATTT
*
56924982 CAGTCATTTTATCCTATGGGGGTATTT
1 CAGTCATTTTACCCTAT-GGGGTATTT
* *
56925009 C-GATCA-TTTACCTTATGGGAGTAGTT
1 CAG-TCATTTTACCCTATGGG-GTATTT
* * *
56925035 CAATCATTTTACCTTGTGGGAGTATTT
1 CAGTCATTTTACCCTATGGG-GTATTT
*
56925062 CAGTTATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTAT-GGGGTATTT
*
56925089 C-GATCA-TTT-CTCTATGGGGGTATTT
1 CAG-TCATTTTACCCTAT-GGGGTATTT
*
56925114 CGGTCATTTTACCCTATGGGGATATTT
1 CAGTCATTTTACCCTATGGGG-TATTT
* *
56925141 CGGTCATTTTACCCTAAGGGGGTATTT
1 CAGTCATTTTACCCT-ATGGGGTATTT
* *
56925168 CGGTTATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTAT-GGGGTATTT
** *
56925195 TTGTCATTTTACCCTATGAGGATATTT
1 CAGTCATTTTACCCTATG-GGGTATTT
*
56925222 CAGTCATTATACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTAT-GGGGTATTT
* *
56925249 CGGTCA-TTTACCCTATGGGAGAATTT
1 CAGTCATTTTACCCTATGGG-GTATTT
* *
56925275 CAGTCATTTTACCCTGTGGGGGTATTG
1 CAGTCATTTTACCCTAT-GGGGTATTT
*
56925302 C-GATTA-TTTACCCTATGCGGGTATTT
1 CAG-TCATTTTACCCTATG-GGGTATTT
56925328 C-GATCATTTTACCCTA
1 CAG-TCATTTTACCCTA
56925344 AATGGTCATA
Statistics
Matches: 418, Mismatches: 50, Indels: 58
0.79 0.10 0.11
Matches are distributed among these distances:
25 30 0.07
26 83 0.20
27 284 0.68
28 21 0.05
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (26 bp):
CAGTCATTTTACCCTATGGGGTATTT
Found at i:56935392 original size:6 final size:6
Alignment explanation
Indices: 56935381--56935462 Score: 65
Period size: 6 Copynumber: 13.3 Consensus size: 6
56935371 CTTTTCTTTG
* * * * *
56935381 TTTTAT TTTTAT TTTTAAT TTTTAT CTTTGT CTTTAAT TTTAAT TTTAAT
1 TTTTAT TTTTAT TTTT-AT TTTTAT TTTTAT -TTTTAT TTTTAT TTTTAT
* * * *
56935431 CTTTAT TTTTAA TTTTAA TGTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
56935463 ATTTTAATAA
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
6 53 0.85
7 9 0.15
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (6 bp):
TTTTAT
Found at i:56935405 original size:19 final size:18
Alignment explanation
Indices: 56935360--56935462 Score: 68
Period size: 19 Copynumber: 5.7 Consensus size: 18
56935350 AAATTTCAAA
* *
56935360 TTTATTTTAATCTTT-TC
1 TTTATTTTTATTTTTATC
* *
56935377 TTT-GTTTTATTTTTATT
1 TTTATTTTTATTTTTATC
* *
56935394 TTTAATTTTTATCTTTGTC
1 TTT-ATTTTTATTTTTATC
* *
56935413 TTTAATTTTAATTTTAATC
1 TTT-ATTTTTATTTTTATC
*
56935432 TTTATTTTTAATTTTAAT-
1 TTTATTTTT-ATTTTTATC
*
56935450 GTTATTTTTATTT
1 TTTATTTTTATTT
56935463 ATTTTAATAA
Statistics
Matches: 68, Mismatches: 14, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
16 8 0.12
17 11 0.16
18 13 0.19
19 36 0.53
ACGTcount: A:0.20, C:0.05, G:0.03, T:0.72
Consensus pattern (18 bp):
TTTATTTTTATTTTTATC
Found at i:56935422 original size:25 final size:25
Alignment explanation
Indices: 56935382--56935449 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
56935372 TTTTCTTTGT
* * *
56935382 TTTATTTTTATTTTTAATTTTTATC
1 TTTATCTTTAATTTTAATTTTAATC
*
56935407 TTTGTCTTTAATTTTAATTTTAATC
1 TTTATCTTTAATTTTAATTTTAATC
*
56935432 TTTATTTTTAATTTTAAT
1 TTTATCTTTAATTTTAAT
56935450 GTTATTTTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.71
Consensus pattern (25 bp):
TTTATCTTTAATTTTAATTTTAATC
Found at i:56949617 original size:16 final size:17
Alignment explanation
Indices: 56949596--56949631 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
56949586 TCAATCATCC
56949596 CTCATCCCTCATCC-CT
1 CTCATCCCTCATCCTCT
*
56949612 CTCATCTCTCATCCTCT
1 CTCATCCCTCATCCTCT
56949629 CTC
1 CTC
56949632 TCAACTCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.11, C:0.53, G:0.00, T:0.36
Consensus pattern (17 bp):
CTCATCCCTCATCCTCT
Found at i:56959105 original size:6 final size:6
Alignment explanation
Indices: 56959090--56959127 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
56959080 GCTTTGGTCC
56959090 TTTA-T TTTATT TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTT
56959128 TCTTTCTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 4 0.12
6 28 0.88
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:56959367 original size:20 final size:20
Alignment explanation
Indices: 56959320--56959393 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 20
56959310 TATCATACAT
56959320 TATTATTTTAAGTTTT--TG
1 TATTATTTTAAGTTTTCATG
56959338 TTCATATATTTTAAGTTTTCATG
1 -T-AT-TATTTTAAGTTTTCATG
*
56959361 TATTATTATTCAAGTTCATCATG
1 TATTATT-TT-AAGTT-TTCATG
*
56959384 CATTATTTTA
1 TATTATTTTA
56959394 TATATTTTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
19 1 0.02
20 6 0.13
21 18 0.39
22 8 0.17
23 13 0.28
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.57
Consensus pattern (20 bp):
TATTATTTTAAGTTTTCATG
Found at i:56959601 original size:27 final size:25
Alignment explanation
Indices: 56959548--56959602 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 25
56959538 AAAACCTTAT
56959548 TTTATTATATTTTACTTATTTCAAA
1 TTTATTATATTTTACTTATTTCAAA
*
56959573 TTTATATATATTATTA-TCTATTTCGAA
1 TTTAT-TATATT-TTACT-TATTTCAAA
56959600 TTT
1 TTT
56959603 TTCATTCCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 5 0.19
26 7 0.27
27 14 0.54
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (25 bp):
TTTATTATATTTTACTTATTTCAAA
Found at i:56959660 original size:23 final size:24
Alignment explanation
Indices: 56959610--56959660 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
56959600 TTTTTCATTC
* *
56959610 CATATGTATTATTTATTTAGATTA
1 CATATATATTATTTATGTAGATTA
*
56959634 -ATATATATTATTT-TGTATATTA
1 CATATATATTATTTATGTAGATTA
56959656 CATAT
1 CATAT
56959661 TTTGATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.55
Consensus pattern (24 bp):
CATATATATTATTTATGTAGATTA
Found at i:56961156 original size:16 final size:16
Alignment explanation
Indices: 56961135--56961168 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
56961125 TGTGTTTTGC
*
56961135 TTTGATTGCATGGCAT
1 TTTGATTGCATGACAT
56961151 TTTGATTGCATGACAT
1 TTTGATTGCATGACAT
56961167 TT
1 TT
56961169 CATCTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.47
Consensus pattern (16 bp):
TTTGATTGCATGACAT
Found at i:56965604 original size:8 final size:7
Alignment explanation
Indices: 56965579--56965679 Score: 70
Period size: 7 Copynumber: 14.6 Consensus size: 7
56965569 GGCAGTAGAG
*
56965579 AAAAAAT
1 AAAAAAC
*
56965586 AAATAAC
1 AAAAAAC
56965593 AAAAAGAC
1 AAAAA-AC
56965601 AAAATAAC
1 AAAA-AAC
56965609 --AAAA-
1 AAAAAAC
*
56965613 AAATAAC
1 AAAAAAC
56965620 AAAATAAC
1 AAAA-AAC
56965628 AAAATAAC
1 AAAA-AAC
56965636 AAAATAAC
1 AAAA-AAC
*
56965644 AAATAAC
1 AAAAAAC
56965651 --AAAAC
1 AAAAAAC
*
56965656 AAACAAC
1 AAAAAAC
56965663 AAAAAAC
1 AAAAAAC
56965670 AAAAAA-
1 AAAAAAC
56965676 AAAA
1 AAAA
56965680 CAAAAACCTC
Statistics
Matches: 77, Mismatches: 9, Indels: 17
0.75 0.09 0.17
Matches are distributed among these distances:
5 6 0.08
6 9 0.12
7 31 0.40
8 30 0.39
9 1 0.01
ACGTcount: A:0.79, C:0.12, G:0.01, T:0.08
Consensus pattern (7 bp):
AAAAAAC
Found at i:56965607 original size:16 final size:15
Alignment explanation
Indices: 56965586--56965673 Score: 84
Period size: 16 Copynumber: 6.2 Consensus size: 15
56965576 GAGAAAAAAT
56965586 AAATAACAAAAAGACA
1 AAATAACAAAAA-ACA
56965602 AAATAAC---AAA-A
1 AAATAACAAAAAACA
56965613 AAATAACAAAATAACA
1 AAATAACAAAA-AACA
56965629 AAATAACAAAATAAC-
1 AAATAACAAAA-AACA
56965644 AAATAAC--AAAAC-
1 AAATAACAAAAAACA
*
56965656 AAACAACAAAAAACA
1 AAATAACAAAAAACA
56965671 AAA
1 AAA
56965674 AAAAAACAAA
Statistics
Matches: 63, Mismatches: 1, Indels: 17
0.78 0.01 0.21
Matches are distributed among these distances:
11 8 0.13
12 10 0.16
13 4 0.06
14 6 0.10
15 12 0.19
16 23 0.37
ACGTcount: A:0.77, C:0.14, G:0.01, T:0.08
Consensus pattern (15 bp):
AAATAACAAAAAACA
Found at i:56965621 original size:19 final size:19
Alignment explanation
Indices: 56965599--56965684 Score: 86
Period size: 19 Copynumber: 4.3 Consensus size: 19
56965589 TAACAAAAAG
56965599 ACAAAATAACAAAAAAATA
1 ACAAAATAACAAAAAAATA
56965618 ACAAAATAACAAAATAACAAAATA
1 ACAAAATAAC---A-AA-AAAATA
*
56965642 AC-AAATAACAAAACAAACA
1 ACAAAATAACAAAA-AAATA
*
56965661 ACAAAA-AACAAAAAAAAA
1 ACAAAATAACAAAAAAATA
56965679 ACAAAA
1 ACAAAA
56965685 ACCTCTATCG
Statistics
Matches: 58, Mismatches: 2, Indels: 15
0.77 0.03 0.20
Matches are distributed among these distances:
18 11 0.19
19 25 0.43
20 4 0.07
22 1 0.02
23 9 0.16
24 8 0.14
ACGTcount: A:0.79, C:0.14, G:0.00, T:0.07
Consensus pattern (19 bp):
ACAAAATAACAAAAAAATA
Found at i:56965621 original size:27 final size:28
Alignment explanation
Indices: 56965581--56965642 Score: 101
Period size: 27 Copynumber: 2.2 Consensus size: 28
56965571 CAGTAGAGAA
56965581 AAAATAAATAACAAAA-AGACAAAATAAC
1 AAAATAAATAACAAAATA-ACAAAATAAC
56965609 AAAA-AAATAACAAAATAACAAAATAAC
1 AAAATAAATAACAAAATAACAAAATAAC
56965636 AAAATAA
1 AAAATAA
56965643 CAAATAACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
27 25 0.78
28 7 0.22
ACGTcount: A:0.77, C:0.10, G:0.02, T:0.11
Consensus pattern (28 bp):
AAAATAAATAACAAAATAACAAAATAAC
Found at i:56965684 original size:8 final size:8
Alignment explanation
Indices: 56965590--56965686 Score: 61
Period size: 8 Copynumber: 11.4 Consensus size: 8
56965580 AAAAATAAAT
56965590 AACAAAAA
1 AACAAAAA
*
56965598 GACAAAATA
1 AACAAAA-A
*
56965607 ACAAAAAAA
1 A-ACAAAAA
*
56965616 TAACAAAAT
1 -AACAAAAA
*
56965625 AACAAAAT
1 AACAAAAA
*
56965633 AACAAAAT
1 AACAAAAA
*
56965641 AAC-AAAT
1 AACAAAAA
56965648 AACAAAACA
1 AACAAAA-A
56965657 AACAACAAAA
1 AAC-A-AAAA
56965667 AACAAAAA
1 AACAAAAA
*
56965675 AAAAACAAA
1 AACAA-AAA
56965684 AAC
1 AAC
56965687 CTCTATCGGG
Statistics
Matches: 73, Mismatches: 8, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
7 7 0.10
8 36 0.49
9 16 0.22
10 11 0.15
11 3 0.04
ACGTcount: A:0.78, C:0.14, G:0.01, T:0.06
Consensus pattern (8 bp):
AACAAAAA
Found at i:56966243 original size:47 final size:47
Alignment explanation
Indices: 56966111--56966249 Score: 154
Period size: 48 Copynumber: 2.9 Consensus size: 47
56966101 AAAGAAGGAG
* * * *
56966111 AAGAGACCAAGGTGAAAACGCGCAAAAGGCGCTTTAAGTCCTAAAAAA
1 AAGAGACCAAGGTGAAAACCCGC-AAAGGCACTTTGAGTCCAAAAAAA
* **
56966159 AAGAGACCAAGGCGAAAACCAACAAATGGCACTTTGAGTCCAAAAAAA
1 AAGAGACCAAGGTGAAAACCCGCAAA-GGCACTTTGAGTCCAAAAAAA
* * *
56966207 AAGAG-CCAATGTGAAAACCCGCAAAGGACACCTTGAGACCAAA
1 AAGAGACCAAGGTGAAAACCCGCAAAGG-CACTTTGAGTCCAAA
56966250 GGGGATTTGA
Statistics
Matches: 76, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
46 2 0.03
47 32 0.42
48 42 0.55
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.11
Consensus pattern (47 bp):
AAGAGACCAAGGTGAAAACCCGCAAAGGCACTTTGAGTCCAAAAAAA
Found at i:56967593 original size:51 final size:51
Alignment explanation
Indices: 56967452--56968258 Score: 863
Period size: 51 Copynumber: 15.9 Consensus size: 51
56967442 AAGTCATTAT
* * * *
56967452 AGCGAATATTATTCCCCTGGTGTTGCAGTGGAACAAATTAAAGCTGAAGGC
1 AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
* * * *
56967503 AGCAAATCTTTTTTTCCCTGGTGTTGCAGTGGAATAGATTAAAGCTGAAGGC
1 AGCGAATC-TTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
* * * * * *
56967555 AGCGGATCTTATTTCCTTGGCATTACAGTGGAACAGATTAAAGTTGAAGCC
1 AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
*
56967606 AGCGAATCTTATTTCCCTGGCGTTGCAATGGAACAGATTAAAGCTGAAGGC
1 AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
* * * * * *
56967657 AGTGAATCTTTTTTCCCTGGCATTGCAATGGAACAAATTAAAGCTAAAGGC
1 AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
* * *
56967708 AGCGAATCTTTTTTCCCCGGCGTTACAGTGGAACAGATTAAAGCTGAAGGC
1 AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
* * * *
56967759 AGCAAATCTTGTTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAAGGC
1 AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
* * * *
56967810 AGCGACTCTTGTTTCCTTGGCGCTGCAGTGGAACAGATTAAAGCTGAAGGC
1 AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
*** * * *
56967861 AGCGAATCTTATTTCCCTATTGTTGCAGTGGAACAGATTAAAGCTAAAAGT
1 AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
* * * *
56967912 AGTGAATCTTATTTCCCTGGCATTGCAGTGGAGCAGATTAAAGCTAAAGGC
1 AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
* **
56967963 AACGAATCTTATTTTTCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
1 AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
* ** *
56968014 AACGAATCTTATTTCCCTGGCGTTGCAGTGGAATGGATTAAAGCTGAAGGT
1 AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
* * * * ** * * ***
56968065 AGCGAATCTTATTTTCCTAGCATTGGAGCAGAATAGATTAAAGCTACAAAAT
1 AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCT-GAAGGC
* ** * *
56968117 ATGGCGGATCTTATCTT-CCTGAAGTTGCAGTGGAGCAGACTAAA---G-A--C
1 A--GCGAATCTTAT-TTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
* * *
56968164 AGCGAATCTTATTTCCCTAGCCTTGTAGTGGAACAGATTAAAGCTGAAGGC
1 AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
* * * * *
56968215 AGCAAACCTTATTTCCCTAGCGTTGCAATGGAATAGATTAAAGC
1 AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGC
56968259 GAAAAAGTAT
Statistics
Matches: 629, Mismatches: 115, Indels: 24
0.82 0.15 0.03
Matches are distributed among these distances:
44 2 0.00
45 30 0.05
47 1 0.00
48 1 0.00
49 2 0.00
51 515 0.82
52 49 0.08
54 27 0.04
55 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (51 bp):
AGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC
Found at i:56975754 original size:80 final size:79
Alignment explanation
Indices: 56975551--56975774 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 79
56975541 TTGAATGATG
* * * *
56975551 TCCGGGCTAAGTCCCGAAGGC-TTGGT-CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGCTAAG-TCCCGAAGGCA
*
56975612 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAA
*
56975630 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
*
56975695 TGCGAGTTACTAAA
66 TGCGAGATACTAAA
* *
56975709 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
56975773 TG
64 TG
56975775 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
78 10 0.08
79 65 0.50
80 52 0.40
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:56975781 original size:80 final size:79
Alignment explanation
Indices: 56975551--56975807 Score: 276
Period size: 79 Copynumber: 3.3 Consensus size: 79
56975541 TTGAATGATG
* * * * *
56975551 TCCGGGCTAAGTCCCGAAGGC-TTGGT-CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGCTAAG-TCCCGAAGGCA
*
56975612 TTTGTGCGAGATACTAAT
63 TTTGTGCGAG-TACTAAA
* *
56975630 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
56975694 GTGCGAGTTACTAAA
66 GTGCGAG-TACTAAA
*
56975709 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
** *
56975773 TGAACGAGTAGCTATA
65 TGTGCGAGTA-CTAAA
* *
56975789 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
56975808 TACGTGATTT
Statistics
Matches: 156, Mismatches: 15, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
78 10 0.06
79 81 0.52
80 63 0.40
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTACTAAA
Found at i:56975788 original size:40 final size:40
Alignment explanation
Indices: 56975551--56975774 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
56975541 TTGAATGATG
* * *
56975551 TCCGGGCTAAGTCCCGAAGGC-TTGGT-CTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
56975590 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
56975630 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
56975669 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
56975709 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
56975750 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
56975775 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 53 0.32
40 108 0.65
41 5 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:56978237 original size:16 final size:17
Alignment explanation
Indices: 56978212--56978246 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
56978202 ACTTTTTCAA
56978212 TCATCCCTCATCC-CTC
1 TCATCCCTCATCCTCTC
*
56978228 TCATCTCTCATCCTCTC
1 TCATCCCTCATCCTCTC
56978245 TC
1 TC
56978247 TCAACTCTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.11, C:0.51, G:0.00, T:0.37
Consensus pattern (17 bp):
TCATCCCTCATCCTCTC
Found at i:56982392 original size:25 final size:25
Alignment explanation
Indices: 56982338--56982392 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
56982328 ACATACTAAA
*
56982338 ATAT-GTCAAAACACAAGCCAAATC
1 ATATGGTCAAAACACAAGCCAAAAC
* *
56982362 AAATGGTCATAACAACAA-CCAAAAC
1 ATATGGTCAAAAC-ACAAGCCAAAAC
56982387 ATATGG
1 ATATGG
56982393 CCAACATTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 3 0.12
25 18 0.72
26 4 0.16
ACGTcount: A:0.51, C:0.22, G:0.11, T:0.16
Consensus pattern (25 bp):
ATATGGTCAAAACACAAGCCAAAAC
Found at i:56982957 original size:25 final size:25
Alignment explanation
Indices: 56982937--56983000 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
56982927 TTGTATCCTT
56982937 ACACGAGCTGTGAATCGGTATGCTC
1 ACACGAGCTGTGAATCGGTATGCTC
* * * *
56982962 CCACCAGTTGTAAATCGGTATGCTC
1 ACACGAGCTGTGAATCGGTATGCTC
56982987 ACACGAGCTGTGAA
1 ACACGAGCTGTGAA
56983001 AATGGGCCTA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (25 bp):
ACACGAGCTGTGAATCGGTATGCTC
Found at i:56984347 original size:24 final size:24
Alignment explanation
Indices: 56984311--56984356 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
56984301 GGGTGAGCCA
*
56984311 ACGTGAAATTTGATACACATCGAC
1 ACGTGAAAATTGATACACATCGAC
56984335 ACGTGAAAATTGATACACATCG
1 ACGTGAAAATTGATACACATCG
56984357 GTACCATCGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ACGTGAAAATTGATACACATCGAC
Found at i:56989903 original size:25 final size:25
Alignment explanation
Indices: 56989870--56989924 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
56989860 ACCAAAATAT
*
56989870 GCCAAAAC-ACAAGCCAAATCAAATG
1 GCCAAAACAACAA-CCAAAACAAATG
* *
56989895 GCCATAACAACAACCAAAACATATG
1 GCCAAAACAACAACCAAAACAAATG
56989920 GCCAA
1 GCCAA
56989925 CATTAGCCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.51, C:0.29, G:0.11, T:0.09
Consensus pattern (25 bp):
GCCAAAACAACAACCAAAACAAATG
Found at i:56998557 original size:19 final size:22
Alignment explanation
Indices: 56998533--56998576 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
56998523 TCATAAAAAT
56998533 AAAAAAT-A-TTAAAAATAATA
1 AAAAAATCATTTAAAAATAATA
*
56998553 GAAAAATCATTTAAAAATAA-A
1 AAAAAATCATTTAAAAATAATA
56998574 AAA
1 AAA
56998577 TAGAATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
20 6 0.30
21 4 0.20
22 10 0.50
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (22 bp):
AAAAAATCATTTAAAAATAATA
Found at i:56999439 original size:22 final size:22
Alignment explanation
Indices: 56999411--56999460 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
56999401 AATTGATTGT
56999411 TTAAATTCAATT-AGAGACTCAA
1 TTAAATTCAATTGA-AGACTCAA
*
56999433 TTAAATTCGATTGAAGACTCAA
1 TTAAATTCAATTGAAGACTCAA
56999455 TTAAAT
1 TTAAAT
56999461 ATTTTTTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 25 0.96
23 1 0.04
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (22 bp):
TTAAATTCAATTGAAGACTCAA
Found at i:57004371 original size:91 final size:91
Alignment explanation
Indices: 57004233--57004440 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
57004223 TTGATTTTAG
* *
57004233 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
57004298 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
57004325 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
57004390 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
57004416 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
57004441 GTTATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 92 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:57004409 original size:26 final size:28
Alignment explanation
Indices: 57004355--57004415 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
57004345 TATTATCAAG
* *
57004355 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
57004383 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
57004409 AATTATA
1 AATTATA
57004416 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:57004415 original size:44 final size:43
Alignment explanation
Indices: 57004273--57004415 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
57004263 GAATTTTATG
* *
57004273 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
57004317 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
57004364 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
57004408 AAATTATA
1 AAATTATA
57004416 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:57004533 original size:59 final size:57
Alignment explanation
Indices: 57004467--57004655 Score: 152
Period size: 59 Copynumber: 3.2 Consensus size: 57
57004457 ATTTTATTAA
57004467 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTAT-TTTTATAGT
* * ** * *
57004526 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT-TTATTA-A--
1 ATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATTTTTATAGT
* * * *
57004587 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGT
57004646 ATCATATATT
1 ATCATATATT
57004656 ATGATTTGAG
Statistics
Matches: 99, Mismatches: 17, Indels: 28
0.69 0.12 0.19
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
59 20 0.20
60 8 0.08
61 10 0.10
63 4 0.04
64 5 0.05
65 6 0.06
66 17 0.17
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (57 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATTTTTATAGT
Found at i:57004564 original size:66 final size:64
Alignment explanation
Indices: 57004494--57004692 Score: 186
Period size: 66 Copynumber: 3.2 Consensus size: 64
57004484 AAATATATTT
57004494 AATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
57004559 G
64 G
* * * * * **
57004560 AATATTAATTATTAAGAATT-TTATTA-A--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
* *
57004614 AATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
57004679 G
64 G
*
57004680 AATATTGATTATT
1 AATATTAATTATT
57004693 AAGAATTTTA
Statistics
Matches: 101, Mismatches: 18, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
58 1 0.01
59 10 0.10
60 8 0.08
61 10 0.10
62 1 0.01
63 3 0.03
64 5 0.05
65 7 0.07
66 27 0.27
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (64 bp):
AATATTAATTATTTAAATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:57004580 original size:120 final size:120
Alignment explanation
Indices: 57004456--57004720 Score: 460
Period size: 120 Copynumber: 2.2 Consensus size: 120
57004446 AATTATTTTA
* * *
57004456 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
57004520 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
57004576 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
*
57004641 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
57004696 AATTTTATTAAATTATATATTTTAA
1 AATTTTATTAAATTATATATTTTAA
57004721 GAATTCTGGG
Statistics
Matches: 138, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 136 0.99
121 2 0.01
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:57004596 original size:61 final size:61
Alignment explanation
Indices: 57004529--57004716 Score: 192
Period size: 61 Copynumber: 3.1 Consensus size: 61
57004519 TTATAGTATC
57004529 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * *
57004590 ATATATT-TTAATT-A-T-AATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTA-TAGTAT
1 ATATATTATGATTTGAGTAAAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
*
57004648 C
61 T
*
57004649 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
57004710 ATATATT
1 ATATATT
57004717 TTAAGAATTC
Statistics
Matches: 96, Mismatches: 19, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
57 11 0.11
58 8 0.08
59 18 0.19
60 16 0.17
61 25 0.26
62 7 0.07
63 11 0.11
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:57004616 original size:15 final size:15
Alignment explanation
Indices: 57004581--57004632 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
57004571 TTAAGAATTT
*
57004581 TATTAAATTAT-ATA
1 TATTTAATTATAATA
57004595 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
57004609 TATTTAATAATAAT-
1 TATTTAATTATAATA
57004623 TATGTTAATT
1 TAT-TTAATT
57004633 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:57007628 original size:91 final size:91
Alignment explanation
Indices: 57007490--57007697 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
57007480 TTGATTTTAG
* *
57007490 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
57007555 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
57007582 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
57007647 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
57007673 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
57007698 GTTATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 92 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:57007666 original size:26 final size:28
Alignment explanation
Indices: 57007612--57007672 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
57007602 TATTATCAAG
* *
57007612 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
57007640 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
57007666 AATTATA
1 AATTATA
57007673 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:57007672 original size:44 final size:43
Alignment explanation
Indices: 57007530--57007672 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
57007520 GAATTTTATG
* *
57007530 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
57007574 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
57007621 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
57007665 AAATTATA
1 AAATTATA
57007673 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:57007862 original size:18 final size:17
Alignment explanation
Indices: 57007834--57007868 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
57007824 ATTATTAAGA
*
57007834 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
57007851 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
57007869 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:57008098 original size:44 final size:45
Alignment explanation
Indices: 57008033--57008123 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
57008023 ACCTCTATTC
* * *
57008033 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
57008077 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
57008122 CA
1 CA
57008124 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:57008125 original size:16 final size:16
Alignment explanation
Indices: 57008104--57008172 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
57008094 GATTAGCTAT
57008104 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
57008120 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
57008137 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
57008153 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
57008169 TACA
1 TACA
57008173 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:57008146 original size:33 final size:32
Alignment explanation
Indices: 57008104--57008172 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
57008094 GATTAGCTAT
57008104 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
57008137 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
57008169 TACA
1 TACA
57008173 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:57009708 original size:16 final size:16
Alignment explanation
Indices: 57009672--57009702 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57009662 ATATTTTTAT
*
57009672 TTTTTATATAAAAATG
1 TTTTTATAAAAAAATG
57009688 TTTTTATAAAAAAAT
1 TTTTTATAAAAAAAT
57009703 TATTTTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
TTTTTATAAAAAAATG
Found at i:57011037 original size:13 final size:14
Alignment explanation
Indices: 57010991--57011037 Score: 51
Period size: 16 Copynumber: 3.3 Consensus size: 14
57010981 ATATTTTAAA
*
57010991 TATTTTAATATAATT
1 TATTTTAAAATAA-T
*
57011006 TAATATTAAAATAAT
1 T-ATTTTAAAATAAT
57011021 TATTTTAAAAT-AT
1 TATTTTAAAATAAT
57011034 TATT
1 TATT
57011038 AAATCATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 6 0.21
14 9 0.32
15 3 0.11
16 10 0.36
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TATTTTAAAATAAT
Found at i:57011061 original size:32 final size:31
Alignment explanation
Indices: 57011025--57011125 Score: 88
Period size: 29 Copynumber: 3.3 Consensus size: 31
57011015 AATAATTATT
57011025 TTAAAATATTATTAAATCATATATTATTTTTA
1 TTAAAATATTATTAAAT-ATATATTATTTTTA
* *
57011057 TTAAATTA-TATTTAATA-ATATTA---TTA
1 TTAAAATATTATTAAATATATATTATTTTTA
*
57011083 TTAAAAT-TTGATTAAATTATTTATTATTTATTA
1 TTAAAATATT-ATTAAA-TATATATTATTT-TTA
*
57011116 TTAAATTATT
1 TTAAAATATT
57011126 TTTTAATAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
26 10 0.19
27 5 0.09
28 2 0.04
29 11 0.20
30 1 0.02
31 7 0.13
32 7 0.13
33 9 0.17
34 2 0.04
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (31 bp):
TTAAAATATTATTAAATATATATTATTTTTA
Found at i:57015197 original size:16 final size:16
Alignment explanation
Indices: 57015176--57015224 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
57015166 TGAATTATTG
*
57015176 ATTACAACTCTATTCC
1 ATTACAACTCTATTAC
*
57015192 ATTACAGCTCTATTAC
1 ATTACAACTCTATTAC
* *
57015208 TTTACAACTCTAGTAC
1 ATTACAACTCTATTAC
57015224 A
1 A
57015225 GCTATATTCC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.37
Consensus pattern (16 bp):
ATTACAACTCTATTAC
Found at i:57019393 original size:38 final size:38
Alignment explanation
Indices: 57019339--57019415 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
57019329 CTCGGTAACC
57019339 ATCATGGCATTATTGGATATTCATCATTCAATTAAATA
1 ATCATGGCATTATTGGATATTCATCATTCAATTAAATA
* *
57019377 ATCATGGCATTGTTGGATATTCATCATTCAATTATATA
1 ATCATGGCATTATTGGATATTCATCATTCAATTAAATA
57019415 A
1 A
57019416 CAACTAACAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (38 bp):
ATCATGGCATTATTGGATATTCATCATTCAATTAAATA
Found at i:57035061 original size:190 final size:190
Alignment explanation
Indices: 57034738--57035121 Score: 768
Period size: 190 Copynumber: 2.0 Consensus size: 190
57034728 AGTTTCTCAT
57034738 AGAAGAAACGATGTAAGTAATGGAATTGTAAATCATGAGATATAATAAATTATGTGAGACAAGTT
1 AGAAGAAACGATGTAAGTAATGGAATTGTAAATCATGAGATATAATAAATTATGTGAGACAAGTT
57034803 CATAATGAATTTGGGTTCCCTTGTTCTGACTTTGGAAAATTATAAAAAAATTTTTAAAAAATAAT
66 CATAATGAATTTGGGTTCCCTTGTTCTGACTTTGGAAAATTATAAAAAAATTTTTAAAAAATAAT
57034868 TATGGGCTTAAATTTATATGTTTAAAATCTTGAATGAGTTTATTTTCAATAGAAACAAAC
131 TATGGGCTTAAATTTATATGTTTAAAATCTTGAATGAGTTTATTTTCAATAGAAACAAAC
57034928 AGAAGAAACGATGTAAGTAATGGAATTGTAAATCATGAGATATAATAAATTATGTGAGACAAGTT
1 AGAAGAAACGATGTAAGTAATGGAATTGTAAATCATGAGATATAATAAATTATGTGAGACAAGTT
57034993 CATAATGAATTTGGGTTCCCTTGTTCTGACTTTGGAAAATTATAAAAAAATTTTTAAAAAATAAT
66 CATAATGAATTTGGGTTCCCTTGTTCTGACTTTGGAAAATTATAAAAAAATTTTTAAAAAATAAT
57035058 TATGGGCTTAAATTTATATGTTTAAAATCTTGAATGAGTTTATTTTCAATAGAAACAAAC
131 TATGGGCTTAAATTTATATGTTTAAAATCTTGAATGAGTTTATTTTCAATAGAAACAAAC
57035118 AGAA
1 AGAA
57035122 ACATCATCTG
Statistics
Matches: 194, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
190 194 1.00
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.35
Consensus pattern (190 bp):
AGAAGAAACGATGTAAGTAATGGAATTGTAAATCATGAGATATAATAAATTATGTGAGACAAGTT
CATAATGAATTTGGGTTCCCTTGTTCTGACTTTGGAAAATTATAAAAAAATTTTTAAAAAATAAT
TATGGGCTTAAATTTATATGTTTAAAATCTTGAATGAGTTTATTTTCAATAGAAACAAAC
Found at i:57037061 original size:50 final size:51
Alignment explanation
Indices: 57036868--57037101 Score: 192
Period size: 50 Copynumber: 4.6 Consensus size: 51
57036858 CGATCTCGTA
* * * *
57036868 TAAGACCATGTTTGGAACATGGCATCGACATC-GATATGTGA-G--CCAGTG
1 TAAGACCATGTTTGGGACATGGCATTGGCATCTGATATGAGAGGTCCCA-TG
* *
57036916 TAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCCATA
1 TAAGACCATGTTTGGGACATGGCATTGGCATC--T--GA-TATGAGAGGTCCCATG
* * * * **
57036972 TAAGACCATGTTTGGGATATGGCGTTGGCACCTG-GATGAGAGGTCCCCCG
1 TAAGACCATGTTTGGGACATGGCATTGGCATCTGATATGAGAGGTCCCATG
* ** *
57037022 TAAGACCATGTTTGGGACATGGCATGGGCATC-GATATGAGAACTGCCATG
1 TAAGACCATGTTTGGGACATGGCATTGGCATCTGATATGAGAGGTCCCATG
* * * *
57037072 TAAGACCATATCTAGGATATGGCATTGGCA
1 TAAGACCATGTTTGGGACATGGCATTGGCA
57037102 GTACAGGAAA
Statistics
Matches: 147, Mismatches: 29, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
48 28 0.19
49 1 0.01
50 75 0.51
52 1 0.01
53 2 0.01
54 7 0.05
55 1 0.01
56 29 0.20
57 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (51 bp):
TAAGACCATGTTTGGGACATGGCATTGGCATCTGATATGAGAGGTCCCATG
Found at i:57037094 original size:100 final size:102
Alignment explanation
Indices: 57036915--57037101 Score: 234
Period size: 100 Copynumber: 1.8 Consensus size: 102
57036905 GTGAGCCAGT
* **
57036915 GTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCCATATAAGACCA
1 GTAAGACCATGTCTGGGACATGGCATGGGCATC----AGATTATGAGAACTCCCATATAAGACCA
* * * *
57036980 TGTTTGGGATATGGCGTTGGCACCTGGATGAGAGGTCCCCC
62 TATCTAGGATATGGCATTGGCACCTGGATGAGAGGTCCCCC
* * *
57037021 GTAAGACCATGTTTGGGACATGGCATGGGCATC-GA-TATGAGAACTGCCATGTAAGACCATATC
1 GTAAGACCATGTCTGGGACATGGCATGGGCATCAGATTATGAGAACTCCCATATAAGACCATATC
57037084 TAGGATATGGCATTGGCA
66 TAGGATATGGCATTGGCA
57037102 GTACAGGAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
100 38 0.54
101 2 0.03
106 31 0.44
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (102 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCATCAGATTATGAGAACTCCCATATAAGACCATATC
TAGGATATGGCATTGGCACCTGGATGAGAGGTCCCCC
Found at i:57038673 original size:23 final size:23
Alignment explanation
Indices: 57038636--57038686 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
57038626 GGGAGAGAAA
* *
57038636 TGTAATATCCTGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
57038659 TGTAATACCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
*
57038682 AGTAA
1 TGTAA
57038687 GAATGTAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAC
Found at i:57045287 original size:27 final size:27
Alignment explanation
Indices: 57045195--57045417 Score: 124
Period size: 27 Copynumber: 8.3 Consensus size: 27
57045185 ACACGCTAGA
* *
57045195 AAATGGAGGCCTTTGTGACAATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
* * * *
57045222 AAATTGAAGCCCTTGTGGAAATCAATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
*
57045249 AAATGGAAGCCTTTGTGGCAATTTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
* * *
57045276 AAGTGGAAGCCTTCGTGG-GATCTATGG
1 AAATGGAAGCCTTTGTGGCAATCTAT-G
* *
57045303 AAA-GGAA-CACGTTCGTGGCACAT-TCT-
1 AAATGGAAGC-C-TTTGTGGCA-ATCTATG
*
57045329 AAA-GGAAGGGCC-TTGTGGCAATCATCTG
1 AAATGGAA--GCCTTTGTGGCAATC-TATG
* * *
57045357 AAA-GAAATGCCTTTGTGGTAATTTATG
1 AAATGGAA-GCCTTTGTGGCAATCTATG
* * *
57045384 AAGTGGAAGCCTTCGTGG-GATCTATGG
1 AAATGGAAGCCTTTGTGGCAATCTAT-G
57045411 AAA-GGAA
1 AAATGGAA
57045418 CACGTTCGTG
Statistics
Matches: 152, Mismatches: 30, Indels: 29
0.72 0.14 0.14
Matches are distributed among these distances:
25 3 0.02
26 33 0.22
27 92 0.61
28 21 0.14
29 3 0.02
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.27
Consensus pattern (27 bp):
AAATGGAAGCCTTTGTGGCAATCTATG
Found at i:57045321 original size:54 final size:54
Alignment explanation
Indices: 57045263--57045430 Score: 168
Period size: 54 Copynumber: 3.1 Consensus size: 54
57045253 GGAAGCCTTT
57045263 GTGGCAATTTATGAAGTGGAAGCCTTCGTGGGATCTATGGAAAGGAACACGTTC
1 GTGGCAATTTATGAAGTGGAAGCCTTCGTGGGATCTATGGAAAGGAACACGTTC
* * * ** * *
57045317 GTGGCACATTCTA--AA--GGAAGGGCCTT-GTGGCAATC-ATCTGAAAGAAATGCCTTT
1 GTGGCA-ATT-TATGAAGTGGAA--GCCTTCGTGG-GATCTAT-GGAAAGGAACACGTTC
*
57045371 GTGGTAATTTATGAAGTGGAAGCCTTCGTGGGATCTATGGAAAGGAACACGTTC
1 GTGGCAATTTATGAAGTGGAAGCCTTCGTGGGATCTATGGAAAGGAACACGTTC
57045425 GTGGCA
1 GTGGCA
57045431 CATTCTAAAG
Statistics
Matches: 86, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
52 6 0.07
53 9 0.10
54 56 0.65
55 9 0.10
56 6 0.07
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.26
Consensus pattern (54 bp):
GTGGCAATTTATGAAGTGGAAGCCTTCGTGGGATCTATGGAAAGGAACACGTTC
Found at i:57045436 original size:108 final size:108
Alignment explanation
Indices: 57045232--57045481 Score: 423
Period size: 108 Copynumber: 2.3 Consensus size: 108
57045222 AAATTGAAGC
* * *
57045232 CCTTGTGGAAATCA-ATGAAATGGAA-GCCTTTGTGGCAATTTATGAAGTGGAAGCCTTCGTGGG
1 CCTTGTGGCAATCATCTGAAA-GAAATGCCTTTGTGGCAATTTATGAAGTGGAAGCCTTCGTGGG
57045295 ATCTATGGAAAGGAACACGTTCGTGGCACATTCTAAAGGAAGGG
65 ATCTATGGAAAGGAACACGTTCGTGGCACATTCTAAAGGAAGGG
*
57045339 CCTTGTGGCAATCATCTGAAAGAAATGCCTTTGTGGTAATTTATGAAGTGGAAGCCTTCGTGGGA
1 CCTTGTGGCAATCATCTGAAAGAAATGCCTTTGTGGCAATTTATGAAGTGGAAGCCTTCGTGGGA
57045404 TCTATGGAAAGGAACACGTTCGTGGCACATTCTAAAGGAAGGG
66 TCTATGGAAAGGAACACGTTCGTGGCACATTCTAAAGGAAGGG
* *
57045447 CCTTGTGGCAATCATCTGAAGGAAATACCTTTGTG
1 CCTTGTGGCAATCATCTGAAAGAAATGCCTTTGTG
57045482 ACAGACCCTG
Statistics
Matches: 135, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
107 16 0.12
108 119 0.88
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (108 bp):
CCTTGTGGCAATCATCTGAAAGAAATGCCTTTGTGGCAATTTATGAAGTGGAAGCCTTCGTGGGA
TCTATGGAAAGGAACACGTTCGTGGCACATTCTAAAGGAAGGG
Found at i:57045611 original size:53 final size:53
Alignment explanation
Indices: 57045516--57045699 Score: 215
Period size: 53 Copynumber: 3.5 Consensus size: 53
57045506 TAAATACAGA
* * * * *
57045516 AAACACTAAAAGAAGGATATGTATGGCTAATTCTAAAGAATGGCAAGTATAGT
1 AAACTCTAAGAGAATGATATGTATGGCTAACTCTAAAGAATGGTAAGTATAGT
* * * *
57045569 GAACTCTGAGAGAATGATATGCATGGCTAACTCTAAAGAATGGTAAGTACAGT
1 AAACTCTAAGAGAATGATATGTATGGCTAACTCTAAAGAATGGTAAGTATAGT
* * * * * *
57045622 AAACTCTAAAAGAATTATATGTGTGGCTAACTCTAAAAGACTGGTAAGTATGGC
1 AAACTCTAAGAGAATGATATGTATGGCTAACTCT-AAAGAATGGTAAGTATAGT
*
57045676 AAACTCTAAGAGAATGATGTGTAT
1 AAACTCTAAGAGAATGATATGTAT
57045700 AGTGAAATTT
Statistics
Matches: 107, Mismatches: 23, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
53 72 0.67
54 35 0.33
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (53 bp):
AAACTCTAAGAGAATGATATGTATGGCTAACTCTAAAGAATGGTAAGTATAGT
Found at i:57045675 original size:27 final size:27
Alignment explanation
Indices: 57045521--57045691 Score: 118
Period size: 27 Copynumber: 6.4 Consensus size: 27
57045511 ACAGAAAACA
* *
57045521 CTAAAAGAA-GGATATGTATGGCTAATT
1 CTAAAAGAATGG-TAAGTATGGCTAACT
* *
57045548 CT-AAAGAATGGCAAGTATAG-TGAACT
1 CTAAAAGAATGGTAAGTATGGCT-AACT
* * * * *
57045574 CTGAGAGAATGATATGCATGGCTAACT
1 CTAAAAGAATGGTAAGTATGGCTAACT
**
57045601 CT-AAAGAATGGTAAGTACAG-TAAACT
1 CTAAAAGAATGGTAAGTATGGCT-AACT
** * *
57045627 CTAAAAGAATTATATGTGTGGCTAACT
1 CTAAAAGAATGGTAAGTATGGCTAACT
* *
57045654 CTAAAAGACTGGTAAGTATGGCAAACT
1 CTAAAAGAATGGTAAGTATGGCTAACT
*
57045681 CTAAGAGAATG
1 CTAAAAGAATG
57045692 ATGTGTATAG
Statistics
Matches: 107, Mismatches: 30, Indels: 14
0.71 0.20 0.09
Matches are distributed among these distances:
25 2 0.02
26 35 0.33
27 68 0.64
28 2 0.02
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (27 bp):
CTAAAAGAATGGTAAGTATGGCTAACT
Found at i:57057503 original size:40 final size:40
Alignment explanation
Indices: 57057459--57057585 Score: 191
Period size: 40 Copynumber: 3.2 Consensus size: 40
57057449 ATAATTATTG
57057459 CCTGAATGCACATACGTGCCTCTGTTTGTACTTCGGTACC
1 CCTGAATGCACATACGTGCCTCTGTTTGTACTTCGGTACC
* *
57057499 CCTGAATGCACATACGTGCCCCTGTTTGTACTCCGGTACC
1 CCTGAATGCACATACGTGCCTCTGTTTGTACTTCGGTACC
* * * * *
57057539 CCTAAATGCACATATGTGCCTCTGTTTATACTTTGGTAAC
1 CCTGAATGCACATACGTGCCTCTGTTTGTACTTCGGTACC
57057579 CCTGAAT
1 CCTGAAT
57057586 CAAATAGTAT
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.32
Consensus pattern (40 bp):
CCTGAATGCACATACGTGCCTCTGTTTGTACTTCGGTACC
Found at i:57057522 original size:20 final size:20
Alignment explanation
Indices: 57057459--57057522 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
57057449 ATAATTATTG
57057459 CCTGAATGCACATACGTGCC
1 CCTGAATGCACATACGTGCC
* ** * * *
57057479 TCTGTTTGTAC-TTCGGTACC
1 CCTGAATGCACATAC-GTGCC
57057499 CCTGAATGCACATACGTGCC
1 CCTGAATGCACATACGTGCC
57057519 CCTG
1 CCTG
57057523 TTTGTACTCC
Statistics
Matches: 30, Mismatches: 12, Indels: 4
0.65 0.26 0.09
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.19, C:0.33, G:0.20, T:0.28
Consensus pattern (20 bp):
CCTGAATGCACATACGTGCC
Found at i:57057540 original size:20 final size:20
Alignment explanation
Indices: 57057480--57057541 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
57057470 ATACGTGCCT
*
57057480 CTGTTTGTACTTCGGTACCC
1 CTGTTTGTACTACGGTACCC
** * *
57057500 CTGAATGCACATAC-GTGCCC
1 CTGTTTGTAC-TACGGTACCC
*
57057520 CTGTTTGTACTCCGGTACCC
1 CTGTTTGTACTACGGTACCC
57057540 CT
1 CT
57057542 AAATGCACAT
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.15, C:0.34, G:0.19, T:0.32
Consensus pattern (20 bp):
CTGTTTGTACTACGGTACCC
Found at i:57061212 original size:32 final size:32
Alignment explanation
Indices: 57061155--57061215 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
57061145 TCGTGTGAGC
*
57061155 ATACCGATTTATAGCTCGTGAGAGCATACCAT
1 ATACCGATTCATAGCTCGTGAGAGCATACCAT
*
57061187 ATACTGATTCATAGCTCGT-ATGAGCATAC
1 ATACCGATTCATAGCTCGTGA-GAGCATAC
57061216 ATGTACATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 1 0.04
32 25 0.96
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (32 bp):
ATACCGATTCATAGCTCGTGAGAGCATACCAT
Found at i:57066675 original size:27 final size:27
Alignment explanation
Indices: 57066645--57066822 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
57066635 ATATTGAGTC
* * * *
57066645 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
57066672 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
57066699 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
57066727 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
57066754 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
57066781 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
57066808 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57066823 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:57066784 original size:82 final size:81
Alignment explanation
Indices: 57066666--57066821 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
57066656 TGCTATATAA
* *
57066666 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
57066731 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
57066748 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
57066812 CACTTAGTGC
65 CACTTAGTGC
57066822 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:57087514 original size:21 final size:21
Alignment explanation
Indices: 57087483--57087538 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
57087473 ACTGTTGTTG
*
57087483 AGAAGGAAGTTGCTGCTGCAGA
1 AGAA-GAAGTTGCTGCTGAAGA
*
57087505 AG-AGAAAGTTGTTGCTGAAGA
1 AGAAG-AAGTTGCTGCTGAAGA
57087526 AGAAGAAGTTGCT
1 AGAAGAAGTTGCT
57087539 AAAAATGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 1 0.03
21 24 0.83
22 4 0.14
ACGTcount: A:0.36, C:0.09, G:0.34, T:0.21
Consensus pattern (21 bp):
AGAAGAAGTTGCTGCTGAAGA
Found at i:57096764 original size:24 final size:24
Alignment explanation
Indices: 57096735--57096803 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
57096725 AAATATAAAA
57096735 AATAATAATACACTATAACTTTTA-
1 AATAATAATACACTATAA-TTTTAG
*
57096759 AGTAATAATACA-TAATAATTTTAG
1 AATAATAATACACT-ATAATTTTAG
* *
57096783 AATAATAATGCACAATAATTT
1 AATAATAATACACTATAATTT
57096804 CAAAAATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
23 6 0.16
24 32 0.84
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (24 bp):
AATAATAATACACTATAATTTTAG
Found at i:57101252 original size:39 final size:40
Alignment explanation
Indices: 57101157--57101379 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
57101147 TTGAATGATG
*
57101157 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
57101195 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
57101236 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
57101275 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
57101314 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
57101353 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
57101380 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:57101343 original size:79 final size:81
Alignment explanation
Indices: 57101157--57101379 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
57101147 TTGAATGATG
* * *
57101157 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
57101218 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
57101236 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
57101298 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
57101314 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
57101378 TG
66 TG
57101380 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:57101401 original size:79 final size:79
Alignment explanation
Indices: 57101157--57101412 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
57101147 TTGAATGATG
* * * *
57101157 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
57101218 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
57101236 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
57101300 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
57101314 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
57101378 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
57101394 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
57101413 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:57109281 original size:79 final size:81
Alignment explanation
Indices: 57109145--57109329 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
57109135 TTGAATGATG
*
57109145 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
57109209 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
57109224 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
57109286 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
57109304 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57109330 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:57109343 original size:40 final size:40
Alignment explanation
Indices: 57109146--57109329 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
57109136 TGAATGATGT
* * * *
57109146 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
57109186 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
57109226 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
57109264 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
57109305 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
57109330 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:57109351 original size:79 final size:79
Alignment explanation
Indices: 57109198--57109362 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
57109188 GGACTAAGAT
* **
57109198 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
57109263 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
57109277 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
57109340 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
57109356 CCGAAGG
1 CCGAAGG
57109363 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:57111807 original size:18 final size:19
Alignment explanation
Indices: 57111786--57111835 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
57111776 CCGCAAGGAC
*
57111786 AAGGACAAAGG-AAAGGCT
1 AAGGACAAAGGCAAAGCCT
*
57111804 AAGG-CTAAGGCAAAGCCT
1 AAGGACAAAGGCAAAGCCT
57111822 AAGGA-AAATGGCAA
1 AAGGACAAA-GGCAA
57111836 GGCCAAGCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
17 5 0.19
18 16 0.62
19 5 0.19
ACGTcount: A:0.48, C:0.14, G:0.30, T:0.08
Consensus pattern (19 bp):
AAGGACAAAGGCAAAGCCT
Found at i:57124681 original size:25 final size:25
Alignment explanation
Indices: 57124603--57124682 Score: 106
Period size: 25 Copynumber: 3.2 Consensus size: 25
57124593 GCTCATCTCC
* *
57124603 GAGCTGAATAATGGTAAGCTCCTCT
1 GAGCTGAATAATGGTAAGCTCATAT
*
57124628 GAGATGAATAATGGTAAGCTCATAT
1 GAGCTGAATAATGGTAAGCTCATAT
* * *
57124653 GAGCTGAGTATTGGTAAGCTCATAA
1 GAGCTGAATAATGGTAAGCTCATAT
57124678 GAGCT
1 GAGCT
57124683 AAAATTGGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (25 bp):
GAGCTGAATAATGGTAAGCTCATAT
Found at i:57130924 original size:38 final size:37
Alignment explanation
Indices: 57130855--57130927 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
57130845 TTTTCATAAT
* *
57130855 TTCACTTTTTCACTTTTAATCACTATTCAATTCAAAA
1 TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
57130892 TTCACTTTTCCA-TTTTCAAGTCAATATTCAATTCAA
1 TTCACTTTTCCACTTTT-AA-TCAATATTCAATTCAA
57130928 TTCCACACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.45
Consensus pattern (37 bp):
TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
Found at i:57131083 original size:23 final size:23
Alignment explanation
Indices: 57131057--57131178 Score: 181
Period size: 23 Copynumber: 5.3 Consensus size: 23
57131047 ATAAGTGCCA
*
57131057 CACTGATATGTAGCCGAAGCTAG
1 CACTGATATGTAGCCGAAGCTAC
* *
57131080 CACTGAAATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
57131103 CACTGATATGTAGCTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
57131126 CACTCAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
57131149 GACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
57131172 CACTGAT
1 CACTGAT
57131179 CAATAACACT
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 86 1.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:57134047 original size:47 final size:49
Alignment explanation
Indices: 57133931--57134056 Score: 168
Period size: 49 Copynumber: 2.6 Consensus size: 49
57133921 GTTTTCACAT
* *
57133931 TGCCATAGTCCA-ACTATGGTCTTACATGTAATCACATATCACATACCGA
1 TGCCATAGTCCAGA-TATGGTCTTACACGGAATCACATATCACATACCGA
* * *
57133980 TGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACA-A-TGA
1 TGCCATAGTCCAGATATGGTCTTACACGGAATCACATATCACATACCGA
*
57134027 TGCCATATTCCAGATATGGTCTTACACGGA
1 TGCCATAGTCCAGATATGGTCTTACACGGA
57134057 GATTTCATAA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
47 29 0.43
48 1 0.01
49 38 0.56
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (49 bp):
TGCCATAGTCCAGATATGGTCTTACACGGAATCACATATCACATACCGA
Found at i:57136090 original size:38 final size:37
Alignment explanation
Indices: 57136021--57136093 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
57136011 TTTTCATAAT
* *
57136021 TTCACTTTTTCACTTTTAATCACTATTCAATTCAAAA
1 TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
57136058 TTCACTTTTCCA-TTTTCAAGTCAATATTCAATTCAA
1 TTCACTTTTCCACTTTT-AA-TCAATATTCAATTCAA
57136094 TTCCACACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.45
Consensus pattern (37 bp):
TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
Found at i:57136256 original size:23 final size:23
Alignment explanation
Indices: 57136223--57136341 Score: 202
Period size: 23 Copynumber: 5.2 Consensus size: 23
57136213 ATAAGTGCCA
*
57136223 CACTGATATGTAGTCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
57136246 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
57136269 CACTGAAAAGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
57136292 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
57136315 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
57136338 CACT
1 CACT
57136342 AATCAATAAC
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 91 1.00
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:57138920 original size:18 final size:18
Alignment explanation
Indices: 57138894--57138934 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
57138884 TGACAAAGAT
57138894 TTGTCATTGACATAAGGA
1 TTGTCATTGACATAAGGA
*
57138912 TTGTTATTGACATAAGGA
1 TTGTCATTGACATAAGGA
57138930 -TGTCA
1 TTGTCA
57138935 AAATCAATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.37
Consensus pattern (18 bp):
TTGTCATTGACATAAGGA
Found at i:57139880 original size:71 final size:71
Alignment explanation
Indices: 57139803--57140019 Score: 159
Period size: 71 Copynumber: 3.1 Consensus size: 71
57139793 TAATTTCGAT
57139803 CAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAGTTAATACATTAATTTGA
1 CAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAGTTAATACATTAATTTGA
57139868 TTCATA
66 TTCATA
** ** * * * * *
57139874 CAAAATATTAATTG-CAT-ATATTTTACCAAATT-TATT--AATATAA-ACAGGTATATTA-ATT
1 CAAAATA-TAAAAGACATGA-AAATTA--ATATTCTTTTGGAA-AGAATATA-GT-TAATACATT
**
57139932 AATTTG---GGT-
59 AATTTGATTCATA
* * * *
57139941 CAAAATATAAAAGACATGGAAATTAATATTCTTTTGGACAGAATATACTTAATACATGAATTTGA
1 CAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAGTTAATACATTAATTTGA
57140006 TTCATA
66 TTCATA
57140012 CAAAATAT
1 CAAAATAT
57140020 TAATTTTATA
Statistics
Matches: 102, Mismatches: 26, Indels: 36
0.62 0.16 0.22
Matches are distributed among these distances:
65 4 0.04
66 11 0.11
67 26 0.25
68 4 0.04
70 6 0.06
71 36 0.35
72 11 0.11
73 4 0.04
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.36
Consensus pattern (71 bp):
CAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAGTTAATACATTAATTTGA
TTCATA
Found at i:57139955 original size:138 final size:138
Alignment explanation
Indices: 57139707--57140128 Score: 666
Period size: 138 Copynumber: 3.1 Consensus size: 138
57139697 GAGAACATAG
*
57139707 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATT
1 ATATAATTAATACATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATT
* * * *
57139772 AATATACACAGTTATTTTAATTAATTTCGATCAAAATATAAAAGACATGAAAATTAATATTCTTT
66 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
57139837 TGGAAAGA
131 TGGAAAGA
* * * **
57139845 ATATAGTTAATACATTAATTTGATTCATACAAAATATTAATTGCATATATTTTACCAAATTTATT
1 ATATAATTAATACATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATT
* *
57139910 AATATAAACAGGTATATTAATTAATTTGGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
66 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
*
57139975 TGGACAGA
131 TGGAAAGA
* *
57139983 ATATACTTAATACATGAATTTGATTCATACAAAATATTAATTTTATATATTTTACTGAATTTATT
1 ATATAATTAATACATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATT
* * *
57140048 AATATAAATAGTTATATTAATTAATTCCGGTAAAAATATAAAAGACATGGAAATTAATAATT-TT
66 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAAT-ATTCTT
57140112 TTGGAAAGA
130 TTGGAAAGA
57140121 ATATAATT
1 ATATAATT
57140129 TTTTTTCTAA
Statistics
Matches: 257, Mismatches: 26, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
138 254 0.99
139 3 0.01
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (138 bp):
ATATAATTAATACATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATT
AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
TGGAAAGA
Found at i:57142278 original size:3 final size:3
Alignment explanation
Indices: 57142270--57142308 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
57142260 TATTCTAATT
57142270 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
57142309 TACCACCTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:57146994 original size:28 final size:29
Alignment explanation
Indices: 57146953--57147013 Score: 74
Period size: 28 Copynumber: 2.1 Consensus size: 29
57146943 AAAAAAAAGT
57146953 TATTAAAAATTATTTTAAAA-A-ATAAAAA
1 TATTAAAAATTA-TTTAAAATATATAAAAA
*
57146981 CTATT-AAAGTTATTTAAAATATATAAAAA
1 -TATTAAAAATTATTTAAAATATATAAAAA
57147010 TATT
1 TATT
57147014 TTTAAATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 7 0.24
28 11 0.38
29 11 0.38
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (29 bp):
TATTAAAAATTATTTAAAATATATAAAAA
Found at i:57150751 original size:17 final size:18
Alignment explanation
Indices: 57150704--57150754 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 18
57150694 ATGGATTTTT
*
57150704 GGATTATGCGTTGAGTTG
1 GGATTATGCGTTGAGTTC
*
57150722 GCGATTCA-ACGTTGA-TTC
1 G-GATT-ATGCGTTGAGTTC
57150740 GGATTATGCGTTGAG
1 GGATTATGCGTTGAG
57150755 CAAGTGATGC
Statistics
Matches: 26, Mismatches: 3, Indels: 8
0.70 0.08 0.22
Matches are distributed among these distances:
16 1 0.04
17 10 0.38
18 4 0.15
19 10 0.38
20 1 0.04
ACGTcount: A:0.20, C:0.12, G:0.33, T:0.35
Consensus pattern (18 bp):
GGATTATGCGTTGAGTTC
Found at i:57151638 original size:29 final size:29
Alignment explanation
Indices: 57151605--57151664 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
57151595 TATGCTACTA
57151605 ATTTTGTTTGTAAAACATTTCCTTACAAC
1 ATTTTGTTTGTAAAACATTTCCTTACAAC
57151634 ATTTTGTTTGTAAAACATTTCCTTACAAC
1 ATTTTGTTTGTAAAACATTTCCTTACAAC
57151663 AT
1 AT
57151665 GTTTTCTCGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.32, C:0.17, G:0.07, T:0.45
Consensus pattern (29 bp):
ATTTTGTTTGTAAAACATTTCCTTACAAC
Found at i:57151652 original size:16 final size:16
Alignment explanation
Indices: 57151605--57151653 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
57151595 TATGCTACTA
57151605 ATTTTGTTTGTAAAAC
1 ATTTTGTTTGTAAAAC
** *
57151621 A-TTT-CCT-TACAAC
1 ATTTTGTTTGTAAAAC
57151634 ATTTTGTTTGTAAAAC
1 ATTTTGTTTGTAAAAC
57151650 ATTT
1 ATTT
57151654 CCTTACAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 6
0.67 0.17 0.17
Matches are distributed among these distances:
13 6 0.25
14 4 0.17
15 4 0.17
16 10 0.42
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.49
Consensus pattern (16 bp):
ATTTTGTTTGTAAAAC
Found at i:57152551 original size:288 final size:285
Alignment explanation
Indices: 57152032--57152563 Score: 791
Period size: 288 Copynumber: 1.9 Consensus size: 285
57152022 GACATAAATG
* *
57152032 ATCGGAGCTGATTTCAAGGATCAAAATAATGTCTTTGATCCTGGAGATAGTTTCGATGCACAAGA
1 ATCGAAGCTGATTTCAAGGATCAAAATAATGTCTTTAATCCTGGAGATAGTTTCGA-GCACAAGA
* *
57152097 AAGCTTAAGTAAGTATTTTTTTTCATTTTATTGTTATTTATTCTAATCATTTTTCTTTTTGTGTA
65 AAGCTTAAGTAAGTATTTTTTTTCATTTTATTGTTATTTATTCTAATCATTATTCTTTTTGTGCA
* * * * *
57152162 GCTAAATATTTGAGGAAAATCTTCGTGAGGAAGGGGGAATGATGCGAGTCTCAAGGCCCAATTTC
130 ACTAAAGATTTGAGGAAAATCTTCATGAGGAAGGGCGAATGATGCAAGTCTCAAGGCCCAATTTC
* * *
57152227 AAACTCATGGATGTGATGGGCTCACACTACCTCAAGGCCCAACAGCAATGTCCAAGGCCAAGCAA
195 AAACCCATGGATGTGATGGGCTCACACCACCTCAAGGCCCAACAACAATGTCCAAGGCCAAGCAA
57152292 ATTAAATCAGGATTCAATCAAAGATA
260 ATTAAATCAGGATTCAATCAAAGATA
* ** *
57152318 ATCGAAGCTGATTTGAAGGAT-AAAATTAATGTCTTTAATTTTGGAGATAGTGTTGGCA-CACAA
1 ATCGAAGCTGATTTCAAGGATCAAAA-TAATGTCTTTAATCCTGGAGATAGT-TTCG-AGCACAA
* *
57152381 GAAAAG-TTAGGTAAGTATTTTTTTTTCATTTTATTGTTATTTATTCTAATCCTTATTCTTTTTG
63 G-AAAGCTTAAGTAAGTA-TTTTTTTTCATTTTATTGTTATTTATTCTAATCATTATTCTTTTTG
* *
57152445 TGCAACTAAAGATTTGAGGATTAATCTTCATGAGGAAGGGCGAATGATGCAAGTCTCAAGGCCTA
126 TGCAACTAAAGATTTGAGGA-AAATCTTCATGAGGAAGGGCGAATGATGCAAGTCTCAAGGCCCA
*
57152510 ATTTCATACCCATGGATGTGATGGGCTCACACCACCTCAAGGCCCAACAACAAT
190 ATTTCAAACCCATGGATGTGATGGGCTCACACCACCTCAAGGCCCAACAACAAT
57152564 TGTAACCCCT
Statistics
Matches: 219, Mismatches: 21, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
285 4 0.02
286 57 0.26
287 68 0.31
288 90 0.41
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (285 bp):
ATCGAAGCTGATTTCAAGGATCAAAATAATGTCTTTAATCCTGGAGATAGTTTCGAGCACAAGAA
AGCTTAAGTAAGTATTTTTTTTCATTTTATTGTTATTTATTCTAATCATTATTCTTTTTGTGCAA
CTAAAGATTTGAGGAAAATCTTCATGAGGAAGGGCGAATGATGCAAGTCTCAAGGCCCAATTTCA
AACCCATGGATGTGATGGGCTCACACCACCTCAAGGCCCAACAACAATGTCCAAGGCCAAGCAAA
TTAAATCAGGATTCAATCAAAGATA
Found at i:57153392 original size:51 final size:49
Alignment explanation
Indices: 57153337--57153471 Score: 146
Period size: 49 Copynumber: 2.7 Consensus size: 49
57153327 CTAATAACAC
* * *
57153337 TTTGTAGACAAGCCACTACTGATATGCATTATATACTGCCACTGATATATT
1 TTTGT-GACAAGCCACCACTAATATGCA-GATATACTGCCACTGATATATT
* * *
57153388 TTTGTGGACAAACCACCACTAATTTGCAGATATACTGGCACTGATATATT
1 TTTGT-GACAAGCCACCACTAATATGCAGATATACTGCCACTGATATATT
* * *
57153438 TTATG-GACAAGCCACCATTGATTTGCAGATATAC
1 TT-TGTGACAAGCCACCACTAATATGCAGATATAC
57153472 AACCACTTCT
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
49 26 0.36
50 22 0.30
51 25 0.34
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (49 bp):
TTTGTGACAAGCCACCACTAATATGCAGATATACTGCCACTGATATATT
Found at i:57153430 original size:50 final size:49
Alignment explanation
Indices: 57153367--57153471 Score: 156
Period size: 49 Copynumber: 2.1 Consensus size: 49
57153357 GATATGCATT
*
57153367 ATATACTGCCACTGATATATTTTTGTGGACAAACCACCACTAATTTGCAG
1 ATATACTGCCACTGATATA-TTTTATGGACAAACCACCACTAATTTGCAG
* * * *
57153417 ATATACTGGCACTGATATATTTTATGGACAAGCCACCATTGATTTGCAG
1 ATATACTGCCACTGATATATTTTATGGACAAACCACCACTAATTTGCAG
57153466 ATATAC
1 ATATAC
57153472 AACCACTTCT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
49 32 0.64
50 18 0.36
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32
Consensus pattern (49 bp):
ATATACTGCCACTGATATATTTTATGGACAAACCACCACTAATTTGCAG
Found at i:57154527 original size:16 final size:15
Alignment explanation
Indices: 57154489--57154518 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
57154479 AAATGAGAGA
*
57154489 AAATGAAAAAAGAAT
1 AAATGAAAAAAAAAT
57154504 AAATGAAAAAAAAAT
1 AAATGAAAAAAAAAT
57154519 GAAGTGAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (15 bp):
AAATGAAAAAAAAAT
Found at i:57163763 original size:128 final size:130
Alignment explanation
Indices: 57163630--57164579 Score: 1193
Period size: 131 Copynumber: 7.3 Consensus size: 130
57163620 GGATTATCGA
* * * * * * * *
57163630 CTTCAATCTGCTCCGCTACTGCTTAAGGAGACAAGATCTGTAATTTTCAACCTACTCCACTGCTG
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTG
* * * * *
57163695 ACCAGGGACATAAGG-CTTGTGGCTTAAATCTGCTTCCTTAC-ACT-TGAAGATAAGATTCGCCG
66 ACCAGGGAAAT-AGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGAAGATAAGATTCGCCG
57163757 T
130 T
* * * * * * *
57163758 CTTCAATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTTCAACCTACTCCACTGCTG
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTG
* * * * * * *
57163823 ACCAGGGAGATAGGAGTTGTGGCTT-AATCTGCTTCCTTAC-ACT-TGAAGATAAGATTCGCCAT
66 ACCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGAAGATAAGATTCGCCGT
* * * * * * *
57163885 CTTCGATCTGCTCCGCTACTACTTAGGGAGACAAGATCTGTAATTTTCAACCTACTCCACTGCTG
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTG
* * * * * * *
57163950 ACCGGGGACATAGGGCTTGTGGCTTAAATCTGCTTCCTTACT-CT-TGAAGATAAGATTTGCCGT
66 ACCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGAAGATAAGATTCGCCGT
* * *
57164013 CTTCGATCTGCTCCACTATTGCTTAGAGAGAGAAGATCTATAGTTTCCAACCTATTCCACTGCT-
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTG
* * *
57164077 ATTCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTTCTGGGGAAGATAAGATTCTCC
66 A-CCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCT-GGGAAGATAAGATTCGCC
57164142 GT
129 GT
*
57164144 CTTCGATC-GCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTACTG
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTG
** * * *
57164208 TTCAGAGAAATAGGACTTGTGGCTTCAATCTGTTTCCCTACTCCTGGAGAAGATAAGATTCGCCA
66 ACCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGG-GAAGATAAGATTCGCCG
57164273 T
130 T
* * *
57164274 CTTCGATCTGCTCCACTATTGCTTAGGGATATAAGATCTATAGTTTCCAACCTATTCCACTACTG
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTG
*
57164339 -CTTAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCC
66 AC-CAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCT-GGGAAGATAAGATTCGCC
57164403 GT
129 GT
* *
57164405 CTTCGATCTGCTCCACTATTTCTTAGGGAGATAAGATCTGTAGTTTCCAACGTATTCCACTGCTG
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTG
** * *
57164470 TTCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTAGGGAAGATAAGATTCACCA
66 ACCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCT-GGGAAGATAAGATTCGCCG
57164535 T
130 T
57164536 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGT
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGT
57164580 ATTCACTGAT
Statistics
Matches: 751, Mismatches: 58, Indels: 23
0.90 0.07 0.03
Matches are distributed among these distances:
127 124 0.17
128 207 0.28
129 4 0.01
130 116 0.15
131 298 0.40
132 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (130 bp):
CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTG
ACCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGAAGATAAGATTCGCCGT
Found at i:57165834 original size:6 final size:7
Alignment explanation
Indices: 57165818--57165851 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
57165808 CCATCATTAC
57165818 TTTTCAT
1 TTTTCAT
57165825 TTTTCA-
1 TTTTCAT
57165831 TTTTCAT
1 TTTTCAT
57165838 TTTTCAT
1 TTTTCAT
57165845 TTTTCAT
1 TTTTCAT
57165852 CCCTCTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTTCAT
Found at i:57165836 original size:13 final size:13
Alignment explanation
Indices: 57165818--57165847 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
57165808 CCATCATTAC
57165818 TTTTCATTTTTCA
1 TTTTCATTTTTCA
57165831 TTTTCATTTTTCA
1 TTTTCATTTTTCA
57165844 TTTT
1 TTTT
57165848 TCATCCCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTCATTTTTCA
Found at i:57166826 original size:1 final size:1
Alignment explanation
Indices: 57166822--57166871 Score: 55
Period size: 1 Copynumber: 50.0 Consensus size: 1
57166812 CTTTTGCTTC
* * * * *
57166822 TTTTTGTTTTTTTTGTTTTTTTTTTGTTTTTTTTGTTTTTTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
57166872 ATTGGATCTG
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.02, C:0.00, G:0.08, T:0.90
Consensus pattern (1 bp):
T
Found at i:57166840 original size:29 final size:29
Alignment explanation
Indices: 57166801--57166863 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 29
57166791 TTGACCGTGA
57166801 TTTTGATTTTTCTTTTGCTTCTTTTTGTTTT
1 TTTTG-TTTTTCTTTTG-TTCTTTTTGTTTT
* *
57166832 TTTTGTTTTTTTTTTGTTTTTTTTGTTTT
1 TTTTGTTTTTCTTTTGTTCTTTTTGTTTT
57166861 TTT
1 TTT
57166864 ATTTTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 15 0.50
30 10 0.33
31 5 0.17
ACGTcount: A:0.02, C:0.05, G:0.10, T:0.84
Consensus pattern (29 bp):
TTTTGTTTTTCTTTTGTTCTTTTTGTTTT
Found at i:57166869 original size:29 final size:30
Alignment explanation
Indices: 57166801--57166871 Score: 92
Period size: 28 Copynumber: 2.4 Consensus size: 30
57166791 TTGACCGTGA
*
57166801 TTTTGATTTTTCTTTTGCTTCTTTTTGTTTT
1 TTTTG-TTTTTTTTTTGCTTCTTTTTGTTTT
*
57166832 TTTTGTTTTTTTTTTG-TTTTTTTTG-TTT
1 TTTTGTTTTTTTTTTGCTTCTTTTTGTTTT
*
57166860 TTTTATTTTTTT
1 TTTTGTTTTTTT
57166872 ATTGGATCTG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 14 0.38
29 8 0.22
30 10 0.27
31 5 0.14
ACGTcount: A:0.03, C:0.04, G:0.08, T:0.85
Consensus pattern (30 bp):
TTTTGTTTTTTTTTTGCTTCTTTTTGTTTT
Found at i:57166871 original size:9 final size:9
Alignment explanation
Indices: 57166808--57166863 Score: 67
Period size: 9 Copynumber: 5.8 Consensus size: 9
57166798 TGATTTTGAT
57166808 TTTTCTTTTG
1 TTTT-TTTTG
*
57166818 CTTCTTTTTG
1 -TTTTTTTTG
57166828 TTTTTTTTG
1 TTTTTTTTG
57166837 TTTTTTTTTTG
1 --TTTTTTTTG
57166848 TTTTTTTTG
1 TTTTTTTTG
57166857 TTTTTTT
1 TTTTTTT
57166864 ATTTTTTTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
9 24 0.59
10 5 0.12
11 12 0.29
ACGTcount: A:0.00, C:0.05, G:0.09, T:0.86
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:57166871 original size:20 final size:20
Alignment explanation
Indices: 57166822--57166863 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
57166812 CTTTTGCTTC
57166822 TTTTTGTTTTTTTTGTTTTT
1 TTTTTGTTTTTTTTGTTTTT
57166842 TTTTTGTTTTTTTTGTTTTT
1 TTTTTGTTTTTTTTGTTTTT
57166862 TT
1 TT
57166864 ATTTTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (20 bp):
TTTTTGTTTTTTTTGTTTTT
Found at i:57185959 original size:39 final size:39
Alignment explanation
Indices: 57185916--57186049 Score: 207
Period size: 39 Copynumber: 3.4 Consensus size: 39
57185906 ACCATGTTTT
57185916 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
57185955 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* * *
57185994 TGTA-TATTGTGATATATGATTAAATGTTATGTGATTATT
1 TG-AGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* *
57186033 TGTGTAATGTGATATAT
1 TGAGTATTGTGATATAT
57186050 ATTTAAAAGT
Statistics
Matches: 88, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
39 87 0.99
40 1 0.01
ACGTcount: A:0.29, C:0.01, G:0.22, T:0.48
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
Found at i:57192921 original size:18 final size:17
Alignment explanation
Indices: 57192888--57192922 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
57192878 CCCCATGCTA
*
57192888 AAGTGAAAATTGATTTT
1 AAGTGAAAAGTGATTTT
57192905 AAGTGAAAACGTGATTTT
1 AAGTGAAAA-GTGATTTT
57192923 GTGGCCTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.40, C:0.03, G:0.20, T:0.37
Consensus pattern (17 bp):
AAGTGAAAAGTGATTTT
Found at i:57193038 original size:48 final size:47
Alignment explanation
Indices: 57192967--57193067 Score: 148
Period size: 48 Copynumber: 2.1 Consensus size: 47
57192957 AGGTGGAAGA
* * * * *
57192967 ATGTGGCAGTTTATTTGCAAAAGTGGTGGCTTGTCCACAAATTTTATT
1 ATGTGGCAGTATATTTACAAAAGTGATGGCCTGTCCAC-AATTTGATT
57193015 ATGTGGCAGTATATTTACAAAAGTGATGGCCTGTCCACAATTTGATT
1 ATGTGGCAGTATATTTACAAAAGTGATGGCCTGTCCACAATTTGATT
57193062 ATGTGG
1 ATGTGG
57193068 TACATTACCT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 14 0.29
48 34 0.71
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.37
Consensus pattern (47 bp):
ATGTGGCAGTATATTTACAAAAGTGATGGCCTGTCCACAATTTGATT
Found at i:57194981 original size:40 final size:40
Alignment explanation
Indices: 57194883--57195145 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
57194873 TCCTCGTTCA
* * * * *
57194883 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
57194922 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
57194962 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
57195002 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
57195042 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
57195082 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
57195122 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
57195146 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:57202933 original size:40 final size:40
Alignment explanation
Indices: 57202833--57203004 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
57202823 GCTCCTCGTT
* * *
57202833 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
57202873 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
57202912 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
57202952 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
57202992 CAAATGCCTTCGG
1 CAAATGCCTTCGG
57203005 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 79 0.68
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Done.