Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 186 of 187
Found at i:57203017 original size:80 final size:79
Alignment explanation
Indices: 57202833--57203057 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
57202823 GCTCCTCGTT
* * * * *
57202833 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
57202897 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * *
57202912 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
** *
57202977 AATTT-GTATCTCGCA
64 AATTTAACAACTCGCA
* * * * *
57202992 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
57203056 GA
63 GA
57203058 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 68 0.56
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAACAACTCGCA
Found at i:57203066 original size:41 final size:41
Alignment explanation
Indices: 57202989--57203066 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
57202979 TTTGTATCTC
* * *
57202989 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
57203030 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
57203067 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:57218608 original size:26 final size:27
Alignment explanation
Indices: 57218577--57218640 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
57218567 TATAACAGTC
57218577 ATTTTACCCTAT-GAGGGTA-TTCGATT
1 ATTTTACCCT-TCGAGGGTATTTCGATT
* *
57218603 ATTTTACCCTTCGGGGGTATTTCGGTT
1 ATTTTACCCTTCGAGGGTATTTCGATT
57218630 ATTTTACCCTT
1 ATTTTACCCTT
57218641 TAGGGCTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 1 0.03
26 16 0.47
27 17 0.50
ACGTcount: A:0.17, C:0.19, G:0.19, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATT
Found at i:57218634 original size:27 final size:25
Alignment explanation
Indices: 57218577--57218650 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 25
57218567 TATAACAGTC
57218577 ATTTTACCCTATGAGGGTATTCGATT
1 ATTTTACCCT-TGAGGGTATTCGATT
* *
57218603 ATTTTACCCTTCGGGGGTATTTCGGTT
1 ATTTTACCCTT-GAGGGTA-TTCGATT
*
57218630 ATTTTACCCTTTAGGGCTATT
1 ATTTTACCCTTGAGGG-TATT
57218651 TAGGTCATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
25 1 0.02
26 21 0.51
27 19 0.46
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.45
Consensus pattern (25 bp):
ATTTTACCCTTGAGGGTATTCGATT
Found at i:57218651 original size:27 final size:26
Alignment explanation
Indices: 57218577--57218660 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 26
57218567 TATAACAGTC
* *
57218577 ATTTTACCCTATGAGGGTA-TTCGATT
1 ATTTTACCCT-TCAGGGTATTTCGGTT
*
57218603 ATTTTACCCTTCGGGGGTATTTCGGTT
1 ATTTTACCCTTC-AGGGTATTTCGGTT
* * *
57218630 ATTTTACCCTTTAGGGCTATTTAGGTC
1 ATTTTACCCTTCAGGG-TATTTCGGTT
57218657 ATTT
1 ATTT
57218661 ATTGACCACT
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
25 1 0.02
26 18 0.38
27 29 0.60
ACGTcount: A:0.18, C:0.17, G:0.20, T:0.45
Consensus pattern (26 bp):
ATTTTACCCTTCAGGGTATTTCGGTT
Found at i:57225092 original size:28 final size:28
Alignment explanation
Indices: 57225060--57225151 Score: 130
Period size: 28 Copynumber: 3.3 Consensus size: 28
57225050 CAGTAACAGT
57225060 ACAGTGTGGGCCTTAGCCCAATACAATA
1 ACAGTGTGGGCCTTAGCCCAATACAATA
* **
57225088 ACAGTGTGGGCCTTAGCCTAATTTAATA
1 ACAGTGTGGGCCTTAGCCCAATACAATA
* *
57225116 ATAGTGTGGGCCTTAGCCCGATACAATA
1 ACAGTGTGGGCCTTAGCCCAATACAATA
*
57225144 ATAGTGTG
1 ACAGTGTG
57225152 ATAATGTAAC
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATACAATA
Found at i:57225508 original size:27 final size:27
Alignment explanation
Indices: 57225486--57225647 Score: 182
Period size: 27 Copynumber: 6.0 Consensus size: 27
57225476 AAGGGTATAA
*
57225486 CAGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTTTGGGGGTATTT
* *
57225513 C-GATTATTTTACCCTTTGGGTGTATTT
1 CAG-TCATTTTACCCTTTGGGGGTATTT
*
57225540 CGGTCATTTTACCCTTTGGGGGTATTT
1 CAGTCATTTTACCCTTTGGGGGTATTT
* * * *
57225567 AAGTTATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTTGGGGGTATTT
*
57225594 CAGTCATTTTACCTTTTGGGGGTATTT
1 CAGTCATTTTACCCTTTGGGGGTATTT
** * **
57225621 TGGTCATTTTATCCTTCAGGGGTATTT
1 CAGTCATTTTACCCTTTGGGGGTATTT
57225648 TGATCATTTA
Statistics
Matches: 112, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 110 0.98
28 1 0.01
ACGTcount: A:0.16, C:0.16, G:0.22, T:0.46
Consensus pattern (27 bp):
CAGTCATTTTACCCTTTGGGGGTATTT
Found at i:57225603 original size:81 final size:81
Alignment explanation
Indices: 57225491--57225647 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 81
57225481 TATAACAGTC
* * *
57225491 ATTTTACCCTATGGGGGTATTTCGATTATTTTACCCTTTGGGTGTATTTCGGTCATTTTACCCTT
1 ATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCCTT
**
57225556 TGGGGGTATTTAAGTT
66 CAGGGGTATTTAAGTT
* * *
57225572 ATTTTACCCT-TCGAGGGTATTTC-AGTCATTTTACCTTTTGGGGGTATTTTGGTCATTTTATCC
1 ATTTTACCCTAT-GAGGGTATTTCGA-TCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCC
57225635 TTCAGGGGTATTT
64 TTCAGGGGTATTT
57225648 TGATCATTTA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 2 0.03
81 64 0.97
ACGTcount: A:0.16, C:0.15, G:0.22, T:0.47
Consensus pattern (81 bp):
ATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCCTT
CAGGGGTATTTAAGTT
Found at i:57229788 original size:19 final size:19
Alignment explanation
Indices: 57229766--57229803 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
57229756 TTGTATGAGA
* *
57229766 TTTGCATTTTGGTGCCTCT
1 TTTGCACTTCGGTGCCTCT
57229785 TTTGCACTTCGGTGCCTCT
1 TTTGCACTTCGGTGCCTCT
57229804 GTATACATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.05, C:0.26, G:0.21, T:0.47
Consensus pattern (19 bp):
TTTGCACTTCGGTGCCTCT
Found at i:57251548 original size:39 final size:40
Alignment explanation
Indices: 57251453--57251714 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
57251443 TTGAATGATG
*
57251453 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
57251491 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
57251532 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
57251571 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
57251610 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
57251649 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
57251688 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
57251715 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:57259672 original size:20 final size:21
Alignment explanation
Indices: 57259637--57259675 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
57259627 TACAGCTTTG
57259637 AAAATTTTAAATGTTTTCGAA
1 AAAATTTTAAATGTTTTCGAA
*
57259658 AAAATTTTTAA-GTTTTCG
1 AAAATTTTAAATGTTTTCG
57259676 GTTTAGTCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.46
Consensus pattern (21 bp):
AAAATTTTAAATGTTTTCGAA
Found at i:57262372 original size:12 final size:12
Alignment explanation
Indices: 57262355--57262379 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57262345 AAAAATAGAA
57262355 AAAGACCACCCC
1 AAAGACCACCCC
57262367 AAAGACCACCCC
1 AAAGACCACCCC
57262379 A
1 A
57262380 CACCTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.48, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAGACCACCCC
Found at i:57265569 original size:13 final size:13
Alignment explanation
Indices: 57265553--57265593 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
57265543 TTTTAAATTG
57265553 TTTAGTGATAATA
1 TTTAGTGATAATA
*
57265566 TTTA--GA-ATTA
1 TTTAGTGATAATA
57265576 TTTAGTGATAATA
1 TTTAGTGATAATA
57265589 TTTAG
1 TTTAG
57265594 AAAAAATCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
10 7 0.30
11 2 0.09
12 2 0.09
13 12 0.52
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.49
Consensus pattern (13 bp):
TTTAGTGATAATA
Found at i:57265579 original size:23 final size:23
Alignment explanation
Indices: 57265544--57265595 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
57265534 AAATTTGATT
*
57265544 TTTA-AATTGTTTAGTGATAATA
1 TTTAGAATTATTTAGTGATAATA
57265566 TTTAGAATTATTTAGTGATAATA
1 TTTAGAATTATTTAGTGATAATA
57265589 TTTAGAA
1 TTTAGAA
57265596 AAAATCTAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 4 0.14
23 24 0.86
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.48
Consensus pattern (23 bp):
TTTAGAATTATTTAGTGATAATA
Found at i:57274885 original size:15 final size:16
Alignment explanation
Indices: 57274867--57274896 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57274857 AAAATGAAGG
57274867 TGGGG-AAAGAAACAA
1 TGGGGAAAAGAAACAA
57274882 TGGGGAAAAGAAACA
1 TGGGGAAAAGAAACA
57274897 CTATAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.07, G:0.33, T:0.07
Consensus pattern (16 bp):
TGGGGAAAAGAAACAA
Found at i:57278695 original size:137 final size:137
Alignment explanation
Indices: 57278518--57278791 Score: 503
Period size: 137 Copynumber: 2.0 Consensus size: 137
57278508 TTTTCATCCC
* *
57278518 TTTGGATGAAAATGTTTTGTTTTAAACAATGACAAAGATAATCTTGGTAAATTTGATGTAAAAAA
1 TTTGGATGAAAATATTTTGTTGTAAACAATGACAAAGATAATCTTGGTAAATTTGATGTAAAAAA
*
57278583 TGATAAAGAAAATTTTCTTGGTTATTTTTTAAATTCTAAAGCTTATCGAGTTTTTAACAAAAGAA
66 TGATAAAGAAAATTTTCTTGGTTATTTTTTAAATTCTAAAGCTTATCAAGTTTTTAACAAAAGAA
57278648 CTTTAGT
131 CTTTAGT
*
57278655 TTTGGATGAAAATATTTTGTTGTAAACAATGACAAAGATAATCTTGGTAAATTTGATGTAAAAAG
1 TTTGGATGAAAATATTTTGTTGTAAACAATGACAAAGATAATCTTGGTAAATTTGATGTAAAAAA
*
57278720 TTATAAAGAAAATTTTCTTGGTTATTTTTTAAATTCTAAAGCTTATCAAGTTTTTAACAAAAGAA
66 TGATAAAGAAAATTTTCTTGGTTATTTTTTAAATTCTAAAGCTTATCAAGTTTTTAACAAAAGAA
57278785 CTTTAGT
131 CTTTAGT
57278792 AGTAGAAGAA
Statistics
Matches: 132, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 132 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (137 bp):
TTTGGATGAAAATATTTTGTTGTAAACAATGACAAAGATAATCTTGGTAAATTTGATGTAAAAAA
TGATAAAGAAAATTTTCTTGGTTATTTTTTAAATTCTAAAGCTTATCAAGTTTTTAACAAAAGAA
CTTTAGT
Found at i:57284679 original size:45 final size:44
Alignment explanation
Indices: 57284606--57284692 Score: 147
Period size: 45 Copynumber: 2.0 Consensus size: 44
57284596 CTAGACTCAG
* *
57284606 ACCCCTTTTTCAACCTGCGCACGGAAACAACCGTACGCTGAGNAA
1 ACCCATTTTTCAACCTGCGCACGAAAACAACCGTACGCTGAG-AA
57284651 ACCCATTTTTCAACCTGCGCACGAAAACAACCGTACGCTGAG
1 ACCCATTTTTCAACCTGCGCACGAAAACAACCGTACGCTGAG
57284693 TATTTTATAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.18
Consensus pattern (44 bp):
ACCCATTTTTCAACCTGCGCACGAAAACAACCGTACGCTGAGAA
Found at i:57285165 original size:21 final size:21
Alignment explanation
Indices: 57285107--57285213 Score: 99
Period size: 23 Copynumber: 5.0 Consensus size: 21
57285097 CCTGATCAGC
57285107 ATACGACACAT-AAGTGCCTG
1 ATACGACACATAAAGTGCCTG
* * ** *
57285127 AAACAACACACGAGGTGCCTG
1 ATACGACACATAAAGTGCCTG
57285148 ATACGACACATAAAGTGCCTGAG
1 ATACGACACATAAAGTGCCT--G
* *
57285171 ATACGTCACATAAAGTGCCTA
1 ATACGACACATAAAGTGCCTG
*
57285192 ATGTACGACACGTAAAGTGCCT
1 A--TACGACACATAAAGTGCCT
57285214 AATCGGCAAA
Statistics
Matches: 69, Mismatches: 13, Indels: 7
0.78 0.15 0.08
Matches are distributed among these distances:
20 8 0.12
21 24 0.35
23 37 0.54
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (21 bp):
ATACGACACATAAAGTGCCTG
Found at i:57285180 original size:23 final size:24
Alignment explanation
Indices: 57285146--57285216 Score: 101
Period size: 23 Copynumber: 3.0 Consensus size: 24
57285136 ACGAGGTGCC
*
57285146 TGATACGACACATAAAGTGCCTGA
1 TGATACGACACATAAAGTGCCTAA
*
57285170 -GATACGTCACATAAAGTGCCTAA
1 TGATACGACACATAAAGTGCCTAA
*
57285193 TG-TACGACACGTAAAGTGCCTAA
1 TGATACGACACATAAAGTGCCTAA
57285216 T
1 T
57285217 CGGCAAAGCC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
23 41 0.98
24 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.23
Consensus pattern (24 bp):
TGATACGACACATAAAGTGCCTAA
Found at i:57286688 original size:30 final size:30
Alignment explanation
Indices: 57286622--57286679 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
57286612 CATATGAAAT
*
57286622 AAAAG-AATAGAAAAAGAGAAGAAGAACAG
1 AAAAGAAATAGAGAAAGAGAAGAAGAACAG
*
57286651 AAAAGAAATAGAGAAAGAGATGAA-AACAG
1 AAAAGAAATAGAGAAAGAGAAGAAGAACAG
57286680 GGGAAGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.67, C:0.03, G:0.24, T:0.05
Consensus pattern (30 bp):
AAAAGAAATAGAGAAAGAGAAGAAGAACAG
Found at i:57287783 original size:23 final size:23
Alignment explanation
Indices: 57287756--57287801 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
57287746 GCTTTGCCGA
*
57287756 TCAGGTACTTTATGTGTCGTATC
1 TCAGGCACTTTATGTGTCGTATC
*
57287779 TCAGGCACTTTATTTGTCGTATC
1 TCAGGCACTTTATGTGTCGTATC
57287802 AGGCACCTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.17, C:0.20, G:0.20, T:0.43
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATC
Found at i:57287805 original size:21 final size:21
Alignment explanation
Indices: 57287755--57287830 Score: 80
Period size: 21 Copynumber: 3.5 Consensus size: 21
57287745 GGCTTTGCCG
* *
57287755 ATCAGGTACTTTATGTGTCGT
1 ATCAGGCACTTTATTTGTCGT
57287776 ATCTCAGGCACTTTATTTGTCGT
1 A--TCAGGCACTTTATTTGTCGT
* **
57287799 ATCAGGCACCTCGTTTGTCGT
1 ATCAGGCACTTTATTTGTCGT
*
57287820 TTCAGGCACTT
1 ATCAGGCACTT
57287831 ATGTTCCGTA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
21 27 0.59
23 19 0.41
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.39
Consensus pattern (21 bp):
ATCAGGCACTTTATTTGTCGT
Found at i:57291357 original size:19 final size:20
Alignment explanation
Indices: 57291300--57291369 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
57291290 ACAATTTTAA
*
57291300 AATCAAGTGAAAATGATTTT
1 AATCAAGTCAAAATGATTTT
* *
57291320 AATCAAGTTAAAATCATTTT
1 AATCAAGTCAAAATGATTTT
57291340 AA-CACA-TCAAAATGATTTT
1 AATCA-AGTCAAAATGATTTT
*
57291359 CAAACAAGTCA
1 -AATCAAGTCA
57291370 GAATTACTCC
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
19 13 0.31
20 24 0.57
21 5 0.12
ACGTcount: A:0.47, C:0.13, G:0.09, T:0.31
Consensus pattern (20 bp):
AATCAAGTCAAAATGATTTT
Found at i:57294314 original size:43 final size:43
Alignment explanation
Indices: 57294251--57294518 Score: 303
Period size: 43 Copynumber: 6.3 Consensus size: 43
57294241 GCGTCGCTAA
* *
57294251 CTTTAGCGGCGCTTT-CCCCACAAACACCGCTAAAGACCAAGAC
1 CTTTAGCGGCG-TTTATCCCACAAACGCCGCTAAAGACCAAGAC
* * *
57294294 CTTTAGCGGCGTTTATCCCACAAAAGCCACTAAAGACTAAGAC
1 CTTTAGCGGCGTTTATCCCACAAACGCCGCTAAAGACCAAGAC
* * * *
57294337 CTTTAGTGGCGCTTATCGCACAAACGCTGCTAAAGACCAAGAC
1 CTTTAGCGGCGTTTATCCCACAAACGCCGCTAAAGACCAAGAC
* *
57294380 CTTTAGCGACATTT-TCCCCACAAACGCCGCTAAAGACCAAGAC
1 CTTTAGCGGCGTTTAT-CCCACAAACGCCGCTAAAGACCAAGAC
* * * *
57294423 CTTTAGCGGCGCTTATCCCACAAACGCCGCTATAGACTATGAC
1 CTTTAGCGGCGTTTATCCCACAAACGCCGCTAAAGACCAAGAC
* * *
57294466 ATTTAGCGGCGCTTTTAT-CGA-AAACGCCGCTAAAGAACAA-AC
1 CTTTAGCGGCG--TTTATCCCACAAACGCCGCTAAAGACCAAGAC
57294508 CTTTAGCGGCG
1 CTTTAGCGGCG
57294519 CTTCTAGCAA
Statistics
Matches: 188, Mismatches: 32, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
42 16 0.09
43 165 0.88
44 3 0.02
45 4 0.02
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.21
Consensus pattern (43 bp):
CTTTAGCGGCGTTTATCCCACAAACGCCGCTAAAGACCAAGAC
Found at i:57294410 original size:129 final size:127
Alignment explanation
Indices: 57294263--57294515 Score: 373
Period size: 129 Copynumber: 2.0 Consensus size: 127
57294253 TTAGCGGCGC
*
57294263 TTTCCCCACAAACACCGCTAAAGACCAAGACCTTTAGCGGCGTTTATCCCACAAAAGCCACTAAA
1 TTTCCCCACAAACACCGCTAAAGACCAAGACCTTTAGCGGCGCTTATCCCACAAAAGCCACTAAA
* * * *
57294328 GACTAAGACCTTTAGTGGCGC-TTATCGCACAAACGCTGCTAAAGACCAAGACCTTTAGCGACAT
66 GACTAAGACATTTAGCGGCGCTTTATCG-A-AAACGCCGCTAAAGAACAA-ACCTTTAGCGACAT
* * * *
57294392 TTTCCCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTATCCCACAAACGCCGCTATA
1 TTTCCCCACAAACACCGCTAAAGACCAAGACCTTTAGCGGCGCTTATCCCACAAAAGCCACTAAA
*
57294457 GACTATGACATTTAGCGGCGCTTTTATCGAAAACGCCGCTAAAGAACAAACCTTTAGCG
66 GACTAAGACATTTAGCGGCGC-TTTATCGAAAACGCCGCTAAAGAACAAACCTTTAGCG
57294516 GCGCTTCTAG
Statistics
Matches: 112, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
128 10 0.09
129 95 0.85
130 1 0.01
131 6 0.05
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (127 bp):
TTTCCCCACAAACACCGCTAAAGACCAAGACCTTTAGCGGCGCTTATCCCACAAAAGCCACTAAA
GACTAAGACATTTAGCGGCGCTTTATCGAAAACGCCGCTAAAGAACAAACCTTTAGCGACAT
Found at i:57294538 original size:42 final size:42
Alignment explanation
Indices: 57294421--57294554 Score: 108
Period size: 42 Copynumber: 3.2 Consensus size: 42
57294411 AAAGACCAAG
* ** * * * * *
57294421 ACCTTTAGCGGCGCTTATCCCACAAACGCCGCTATAGACTATG
1 ACCTTTAGCGGCGCTTCTAGCAAAAACACCGCTAAAAAC-ATA
* * * * *
57294464 ACATTTAGCGGCGCTTTTATCGAAAACGCCGCTAAAGAACA-A
1 ACCTTTAGCGGCGCTTCTAGCAAAAACACCGCTAAA-AACATA
*
57294506 ACCTTTAGCGGCGCTTCTAGCAAAAATACCGCTAAAAACATA
1 ACCTTTAGCGGCGCTTCTAGCAAAAACACCGCTAAAAACATA
*
57294548 ATCTTTA
1 ACCTTTA
57294555 AAAAAATTAT
Statistics
Matches: 73, Mismatches: 16, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
41 4 0.05
42 37 0.51
43 30 0.41
44 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (42 bp):
ACCTTTAGCGGCGCTTCTAGCAAAAACACCGCTAAAAACATA
Found at i:57295306 original size:23 final size:23
Alignment explanation
Indices: 57295256--57295307 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
57295246 GTTAGGTGTC
* *
57295256 AGTATAAAGACATGTCAGATATG
1 AGTATGAAGACATGTCAGAGATG
* * *
57295279 GGTATGAAGGCATGTCTGAGATG
1 AGTATGAAGACATGTCAGAGATG
57295302 AGTATG
1 AGTATG
57295308 TTCAATTTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.27
Consensus pattern (23 bp):
AGTATGAAGACATGTCAGAGATG
Found at i:57297704 original size:57 final size:59
Alignment explanation
Indices: 57297642--57297759 Score: 213
Period size: 59 Copynumber: 2.0 Consensus size: 59
57297632 TAATCTAAAA
*
57297642 AGTGCCAATTATAGTAG-T-TATAAAAAAAAGCACAACTAATGATGAGAAAAAGCTATG
1 AGTGCCAATTATAGTAGTTATATAAAAAAAAGCACAACTAATGAGGAGAAAAAGCTATG
57297699 AGTGCCAATTATAGTAGTTATATAAAAAAAAGCACAACTAATGAGGAGAAAAAGCTATG
1 AGTGCCAATTATAGTAGTTATATAAAAAAAAGCACAACTAATGAGGAGAAAAAGCTATG
57297758 AG
1 AG
57297760 ACATTCAAAA
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
57 17 0.29
58 1 0.02
59 40 0.69
ACGTcount: A:0.49, C:0.10, G:0.19, T:0.22
Consensus pattern (59 bp):
AGTGCCAATTATAGTAGTTATATAAAAAAAAGCACAACTAATGAGGAGAAAAAGCTATG
Found at i:57299370 original size:10 final size:10
Alignment explanation
Indices: 57299322--57299382 Score: 61
Period size: 10 Copynumber: 5.8 Consensus size: 10
57299312 AAAATAAAAG
57299322 TTTAAAATCTT
1 TTTAAAATC-T
* *
57299333 TTTTAAATTT
1 TTTAAAATCT
57299343 TTTAAAAAT-T
1 TTT-AAAATCT
57299353 TTTAAAATCT
1 TTTAAAATCT
57299363 TTTAAAATTCAT
1 TTTAAAA-TC-T
57299375 TTTAAAAT
1 TTTAAAAT
57299383 TTTAAATCAC
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
9 5 0.12
10 16 0.37
11 14 0.33
12 8 0.19
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (10 bp):
TTTAAAATCT
Found at i:57300186 original size:21 final size:21
Alignment explanation
Indices: 57300136--57300197 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 21
57300126 CTAACTTGAC
57300136 CCCAAATCTCTAAACCCTAAAT
1 CCCAAA-CTCTAAACCCTAAAT
* *
57300158 CTCTAACTCTAAACCTCT-AAT
1 CCCAAACTCTAAACC-CTAAAT
57300179 CCCAAACTC-ATAACCCTAA
1 CCCAAACTCTA-AACCCTAA
57300198 TTACACCAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
20 3 0.09
21 24 0.73
22 6 0.18
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.24
Consensus pattern (21 bp):
CCCAAACTCTAAACCCTAAAT
Found at i:57300320 original size:7 final size:7
Alignment explanation
Indices: 57300298--57300350 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
57300288 GACCCTTAAC
57300298 CCCTAAA
1 CCCTAAA
*
57300305 TCCTAAA
1 CCCTAAA
*
57300312 CCCTGAA
1 CCCTAAA
*
57300319 CCCTTAA
1 CCCTAAA
57300326 CCCTAAA
1 CCCTAAA
*
57300333 CCTTAAAA
1 CCCT-AAA
*
57300341 CCTTAAA
1 CCCTAAA
57300348 CCC
1 CCC
57300351 ATAACCCCCA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
7 31 0.82
8 7 0.18
ACGTcount: A:0.38, C:0.40, G:0.02, T:0.21
Consensus pattern (7 bp):
CCCTAAA
Found at i:57300322 original size:29 final size:30
Alignment explanation
Indices: 57300289--57300358 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 30
57300279 CTCTAACCCG
*
57300289 ACCCTTAACCCCTAAATCC-T-AAACCCTGA
1 ACCCTTAACCCCTAAA-CCTTAAAACCCTAA
*
57300318 ACCCTTAA-CCCTAAACCTTAAAACCTTAA
1 ACCCTTAACCCCTAAACCTTAAAACCCTAA
*
57300347 ACCCATAACCCC
1 ACCCTTAACCCC
57300359 CAGTCCCTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
27 2 0.06
28 8 0.23
29 22 0.63
30 3 0.09
ACGTcount: A:0.37, C:0.41, G:0.01, T:0.20
Consensus pattern (30 bp):
ACCCTTAACCCCTAAACCTTAAAACCCTAA
Found at i:57301071 original size:42 final size:41
Alignment explanation
Indices: 57301020--57301159 Score: 235
Period size: 41 Copynumber: 3.4 Consensus size: 41
57301010 ACGCTTTACC
*
57301020 AAAAACGCCGCTAAAGGTTTGCGCATTAGCGGCGCTTCTTG
1 AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTG
* *
57301061 AAAAAACGCCGTTAAAGGTCTGCACATTAGCGGCGCTTCTTG
1 -AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTG
57301103 AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTG
1 AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTG
*
57301144 AAAAACGCTGCTAAAG
1 AAAAACGCCGCTAAAG
57301160 ACCCACAAGG
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
41 54 0.59
42 38 0.41
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTG
Found at i:57306253 original size:111 final size:104
Alignment explanation
Indices: 57306088--57306649 Score: 496
Period size: 98 Copynumber: 5.5 Consensus size: 104
57306078 TATATTATAA
* * *
57306088 AAAATTTACATTAATAAAAAATCACAAAACACTAAACTAAACACTAACAGTTTATATAACTTAAT
1 AAAA-TTACATTACTAAAAAATCACAAAACCCTAAACTAAACACTAACAATTTATA-AAC-TAAT
57306153 CATAAATTACTAACAAAATAACTATAAAATTATATATATATATATTT
63 CATAAATTACTAACAAAATAACTAT-AAATTAT-T-T-T-TATATTT
*
57306200 AAAATTACATTACTAAAAAATCACAAAACCCTAAACTAAACACTAATAATTTATAAACTAATCAT
1 AAAATTACATTACTAAAAAATCACAAAACCCTAAACTAAACACTAACAATTTATAAACTAATCAT
* * * *
57306265 AAATTAGTAAAAAAATAATTATAACATT-TTTTTA-A--A
66 AAATTACTAACAAAATAACTATAA-ATTATTTTTATATTT
* *
57306301 AAGAATTACATTACTAATAAATCACAAAA--C---ACAAAACACTAACAATTTATATAACCTAAT
1 AA-AATTACATTACTAAAAAATCACAAAACCCTAAACTAAACACTAACAATTTATA-AA-CTAAT
* *
57306361 CATAAATTACTAACAAAACAACTAT--A--ATTTTTCT-TTT
63 CATAAATTACTAACAAAATAACTATAAATTATTTTTATATTT
* * * *
57306398 -AAATTACATTACTAAAAATTCACAAAATCTTAAACTAAACACTAACAATTTATAAACTAATTAT
1 AAAATTACATTACTAAAAAATCACAAAACCCTAAACTAAACACTAACAATTTATAAACTAATCAT
*
57306462 AAATTACTAACAAAATAACTATAACATT-TTTTTA-A--A
66 AAATTACTAACAAAATAACTATAA-ATTATTTTTATATTT
** * * * *
57306498 AAGAATTTACATTACTAAAACTTCATAAAA--C---ACAAAACACTGACAATTTATAAGCTAATC
1 AA-AA-TTACATTACTAAAAAATCACAAAACCCTAAACTAAACACTAACAATTTATAAACTAATC
**
57306558 ATAAATTACTAACAAAATAACTAT-AA-TATTTTTA-A-AA
64 ATAAATTACTAACAAAATAACTATAAATTATTTTTATATTT
* ** *
57306595 AAGAATTTACATTACTAATAAATCACAAAACACAAAACACAAAACACTAACAATT
1 AA-AA-TTACATTACTAAAAAATCACAAAAC-CCTAA-ACTAAACACTAACAATT
57306650 ACTAACAACA
Statistics
Matches: 381, Mismatches: 38, Indels: 70
0.78 0.08 0.14
Matches are distributed among these distances:
95 30 0.08
96 10 0.03
97 47 0.12
98 79 0.21
99 28 0.07
100 21 0.06
101 4 0.01
102 32 0.08
103 23 0.06
104 18 0.05
105 1 0.00
106 1 0.00
107 1 0.00
108 3 0.01
109 29 0.08
110 3 0.01
111 47 0.12
112 4 0.01
ACGTcount: A:0.54, C:0.15, G:0.01, T:0.30
Consensus pattern (104 bp):
AAAATTACATTACTAAAAAATCACAAAACCCTAAACTAAACACTAACAATTTATAAACTAATCAT
AAATTACTAACAAAATAACTATAAATTATTTTTATATTT
Found at i:57306337 original size:109 final size:111
Alignment explanation
Indices: 57306088--57306387 Score: 313
Period size: 111 Copynumber: 2.8 Consensus size: 111
57306078 TATATTATAA
* *
57306088 AAAATTTACATTAATAAAAAATCACAAAACACTAAACTAAACACTAACAGTTTATATAACTTAAT
1 AAAA-TTACATAAATAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACTTAAT
* * * * *
57306153 CATAAATTACTAACAAAATAACTATAAAATTATATATATATATATTT
65 CATAAATTACTAAAAAAATAACTATAAAATTATATATAAAAAGAATT
* * * *
57306200 AAAATTACATTACTAAAAAATCACAAAACCCTAAACTAAACACTAATAATTTATA-AAC-TAATC
1 AAAATTACATAAATAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACTTAATC
* * * * *
57306263 ATAAATTAGTAAAAAAATAATTATAACATT-TTTTTAAAAAGAATT
66 ATAAATTACTAAAAAAATAACTATAAAATTATATATAAAAAGAATT
* *
57306308 -ACATTAC-T-AAT---AAATCACAAAACAC---A--AAACACTAACAATTTATATAACCTAATC
1 AAAATTACATAAATAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACTTAATC
* *
57306362 ATAAATTACTAACAAAACAACTATAA
66 ATAAATTACTAAAAAAATAACTATAA
57306388 TTTTTCTTTT
Statistics
Matches: 164, Mismatches: 22, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
97 17 0.10
98 3 0.02
99 28 0.17
102 13 0.08
105 2 0.01
106 1 0.01
107 6 0.04
108 9 0.05
109 31 0.19
110 3 0.02
111 47 0.29
112 4 0.02
ACGTcount: A:0.55, C:0.14, G:0.01, T:0.29
Consensus pattern (111 bp):
AAAATTACATAAATAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACTTAATC
ATAAATTACTAAAAAAATAACTATAAAATTATATATAAAAAGAATT
Found at i:57306482 original size:98 final size:96
Alignment explanation
Indices: 57306202--57306945 Score: 559
Period size: 98 Copynumber: 7.8 Consensus size: 96
57306192 ATATATTTAA
* * *
57306202 AATTACATTACTAAAAAATCACAAAACCCTAAACTAAACACTAATAATTTATAAACTAATCATAA
1 AATTACATTACTAAAAATTCACAAAA--C---ACAAAACACTAACAATTTATAAACTAATCATAA
* * *
57306267 ATTAGTAAAAAAATAATTATAACATTTTTTTAAAAAG
61 ATTACTAACAAAATAACTATAACATTTTTTT-AAAAG
57306304 AATTACATTACTAATAAA-TCACAAAACACAAAACACTAACAATTTATATAACCTAATCATAAAT
1 AATTACATTACTAA-AAATTCACAAAACACAAAACACTAACAATTTATA-AA-CTAATCATAAAT
* **
57306368 TACTAACAAAACAACTAT-A-ATTTTTCTT-TTA-
63 TACTAACAAAATAACTATAACATTTTT-TTAAAAG
* *
57306399 AATTACATTACTAAAAATTCACAAAATCTTAAACTAAACACTAACAATTTATAAACTAATTATAA
1 AATTACATTACTAAAAATTCACAAAA-C----ACAAAACACTAACAATTTATAAACTAATCATAA
57306464 ATTACTAACAAAATAACTATAACATTTTTTTAAAAAG
61 ATTACTAACAAAATAACTATAACATTTTTTT-AAAAG
* * * *
57306501 AATTTACATTACTAAAACTTCATAAAACACAAAACACTGACAATTTATAAGCTAATCATAAATTA
1 AA-TTACATTACTAAAAATTCACAAAACACAAAACACTAACAATTTATAAACTAATCATAAATTA
* **
57306566 CTAACAAAATAACTATAATATTTTTAAAAAAG
65 CTAACAAAATAACTATAACATTTTTTTAAAAG
* *
57306598 AATTTACATTACTAATAAA-TCACAAAACACAAAACAC-AA-AA--CACT-AAC-AAT--T-ACT
1 AA-TTACATTACTAA-AAATTCACAAAACACAAAACACTAACAATTTA-TAAACTAATCATAAAT
* * * * * * *
57306653 AAC-AACATAATTA-TACAATTA-TTTTTAAAAAA
63 TACTAACAAAATAACTATAA-CATTTTTTTAAAAG
* * * * * * *
57306685 AATTAAATTACTAAAAAATCACAAAACCCTAAACTAATCATA-AATTACTAACAAAATAA-CTAT
1 AATTACATTACTAAAAATTCACAAAACACAAAAC-ACT-A-ACAATT--T-ATAAACTAATC-AT
** * * ** *
57306748 AATATTTTTAA-AAAAGAA-T-TTACA--TTACTAATA-
59 AA-ATTACTAACAAAATAACTATAACATTTTTTTAAAAG
57306781 AA-T-C---AC--AAAA--CACAAAACACAAAACACTAACAATTTATAAACTAATCATAAATTAC
1 AATTACATTACTAAAAATTCACAAAACACAAAACACTAACAATTTATAAACTAATCATAAATTAC
57306837 TAACAAAATAACTATAACATTTTTTTAAAAAG
66 TAACAAAATAACTATAACATTTTTTT-AAAAG
* * * *
57306869 AATTTACATTACTAAAACTTCATAAAACACAAAACACTGACAATTTATAAGCTAATCATAAATTA
1 AA-TTACATTACTAAAAATTCACAAAACACAAAACACTAACAATTTATAAACTAATCATAAATTA
57306934 CTAACAAAATAA
65 CTAACAAAATAA
57306946 TTTTACATTA
Statistics
Matches: 514, Mismatches: 72, Indels: 116
0.73 0.10 0.17
Matches are distributed among these distances:
81 6 0.01
82 17 0.03
83 3 0.01
84 5 0.01
85 8 0.02
86 30 0.06
87 32 0.06
88 12 0.02
89 9 0.02
90 5 0.01
91 3 0.01
92 3 0.01
93 3 0.01
94 6 0.01
95 28 0.05
96 10 0.02
97 67 0.13
98 148 0.29
99 33 0.06
100 33 0.06
101 3 0.01
102 25 0.05
103 25 0.05
ACGTcount: A:0.54, C:0.15, G:0.01, T:0.29
Consensus pattern (96 bp):
AATTACATTACTAAAAATTCACAAAACACAAAACACTAACAATTTATAAACTAATCATAAATTAC
TAACAAAATAACTATAACATTTTTTTAAAAG
Found at i:57307090 original size:15 final size:16
Alignment explanation
Indices: 57307070--57307099 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
57307060 TATATATATA
57307070 TATATTTT-TAAAAAT
1 TATATTTTATAAAAAT
57307085 TATATTTTATAAAAA
1 TATATTTTATAAAAA
57307100 CAAAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TATATTTTATAAAAAT
Found at i:57309297 original size:21 final size:21
Alignment explanation
Indices: 57309273--57309313 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
57309263 AATAAACACC
*
57309273 AAAAATTTATTTTAAAAATAA
1 AAAAATATATTTTAAAAATAA
57309294 AAAAATATATTTTAAAAATA
1 AAAAATATATTTTAAAAATA
57309314 TTTTAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
AAAAATATATTTTAAAAATAA
Found at i:57309532 original size:12 final size:12
Alignment explanation
Indices: 57309515--57309542 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
57309505 GCACCACATC
57309515 AAGTCATTCATT
1 AAGTCATTCATT
57309527 AAGTCATTCATT
1 AAGTCATTCATT
57309539 AAGT
1 AAGT
57309543 GTTTTTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (12 bp):
AAGTCATTCATT
Found at i:57309552 original size:16 final size:16
Alignment explanation
Indices: 57309533--57309612 Score: 63
Period size: 12 Copynumber: 5.6 Consensus size: 16
57309523 CATTAAGTCA
*
57309533 TTCATTAAGTGTTTTT
1 TTCATCAAGTGTTTTT
*
57309549 TTCATCAA--G--TCT
1 TTCATCAAGTGTTTTT
57309561 TTCATCAAGTGTTTTT
1 TTCATCAAGTGTTTTT
*
57309577 TTCATCAA--G--TCT
1 TTCATCAAGTGTTTTT
57309589 TTCATCAAGTG--TTT
1 TTCATCAAGTGTTTTT
57309603 TTCATCAAGT
1 TTCATCAAGT
57309613 CATTAATCAA
Statistics
Matches: 53, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
12 20 0.38
14 16 0.30
16 17 0.32
ACGTcount: A:0.23, C:0.16, G:0.11, T:0.50
Consensus pattern (16 bp):
TTCATCAAGTGTTTTT
Found at i:57309564 original size:28 final size:28
Alignment explanation
Indices: 57309521--57309624 Score: 149
Period size: 28 Copynumber: 3.8 Consensus size: 28
57309511 CATCAAGTCA
* * *
57309521 TTCATTAAGTCATTCATTAAGTGTTTTT
1 TTCATCAAGTCTTTCATCAAGTGTTTTT
57309549 TTCATCAAGTCTTTCATCAAGTGTTTTT
1 TTCATCAAGTCTTTCATCAAGTGTTTTT
57309577 TTCATCAAGTCTTTCATCAAGTG--TTT
1 TTCATCAAGTCTTTCATCAAGTGTTTTT
* *
57309603 TTCATCAAGTCATTAATCAAGT
1 TTCATCAAGTCTTTCATCAAGT
57309625 TTTCCATCAA
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
26 23 0.32
28 48 0.68
ACGTcount: A:0.26, C:0.16, G:0.11, T:0.47
Consensus pattern (28 bp):
TTCATCAAGTCTTTCATCAAGTGTTTTT
Found at i:57309632 original size:24 final size:25
Alignment explanation
Indices: 57309546--57309645 Score: 112
Period size: 28 Copynumber: 3.9 Consensus size: 25
57309536 ATTAAGTGTT
*
57309546 TTTTTCATCAAGTCTTTCATCAAGTG
1 TTTTTCATCAAGTCTTTAATCAAG-G
*
57309572 TTTTTTTCATCAAGTCTTTCATCAAGTG
1 --TTTTTCATCAAGTCTTTAATCAAG-G
*
57309600 TTTTTCATCAAGTCATTAATCAA-G
1 TTTTTCATCAAGTCTTTAATCAAGG
* *
57309624 TTTTCCATCAAGTTTTTAATCA
1 TTTTTCATCAAGTCTTTAATCA
57309646 TTAAGTTTTT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
24 20 0.30
26 21 0.31
28 26 0.39
ACGTcount: A:0.26, C:0.18, G:0.09, T:0.47
Consensus pattern (25 bp):
TTTTTCATCAAGTCTTTAATCAAGG
Found at i:57309645 original size:12 final size:12
Alignment explanation
Indices: 57309546--57309645 Score: 83
Period size: 12 Copynumber: 7.8 Consensus size: 12
57309536 ATTAAGTGTT
57309546 TTTTTCATCAAG
1 TTTTTCATCAAG
*
57309558 TCTTTCATCAAGTG
1 TTTTTCATCAA--G
57309572 TTTTTTTCATCAAG
1 --TTTTTCATCAAG
*
57309586 TCTTTCATCAAGTG
1 TTTTTCATCAA--G
57309600 TTTTTCATCAAG
1 TTTTTCATCAAG
** *
57309612 TCATTAATCAAG
1 TTTTTCATCAAG
*
57309624 TTTTCCATCAAG
1 TTTTTCATCAAG
*
57309636 TTTTTAATCA
1 TTTTTCATCA
57309646 TTAAGTTTTT
Statistics
Matches: 69, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
12 46 0.67
14 13 0.19
16 10 0.14
ACGTcount: A:0.26, C:0.18, G:0.09, T:0.47
Consensus pattern (12 bp):
TTTTTCATCAAG
Found at i:57312057 original size:40 final size:40
Alignment explanation
Indices: 57311999--57312088 Score: 126
Period size: 40 Copynumber: 2.2 Consensus size: 40
57311989 GGCTTTTGGA
* *
57311999 TAAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCATTT
1 TAAAAAATGCAGCTATAGATCGAGCATTAGCGGCGCATTT
* * * *
57312039 TGAGAAATGCAGCTATAGATCGAGTATTAGCGGCGCTTTT
1 TAAAAAATGCAGCTATAGATCGAGCATTAGCGGCGCATTT
57312079 TAAAAAATGC
1 TAAAAAATGC
57312089 CGCAAAAATT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (40 bp):
TAAAAAATGCAGCTATAGATCGAGCATTAGCGGCGCATTT
Found at i:57312197 original size:40 final size:40
Alignment explanation
Indices: 57312136--57312245 Score: 157
Period size: 40 Copynumber: 2.7 Consensus size: 40
57312126 AGCTTTAGTG
* *
57312136 GCATTAGTTGGCGCTTCATAAAAAACGCCGCTATATATCGA
1 GCATTAG-CGGCGCTTTATAAAAAACGCCGCTATATATCGA
* *
57312177 GTATTAGCGGCGCTTTATAAAAAATGCCGCTATATATCGA
1 GCATTAGCGGCGCTTTATAAAAAACGCCGCTATATATCGA
* *
57312217 GCATTAGCGGCGCTTTGTCAAAAACGCCG
1 GCATTAGCGGCGCTTTATAAAAAACGCCG
57312246 TAAAAACATT
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
40 55 0.90
41 6 0.10
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTATAAAAAACGCCGCTATATATCGA
Found at i:57312635 original size:14 final size:15
Alignment explanation
Indices: 57312618--57312659 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
57312608 GAGTTACTAT
*
57312618 TTTAAGGTTTATGG-
1 TTTAAGGTTTAGGGA
*
57312632 TTTAAGGGTT-GGGA
1 TTTAAGGTTTAGGGA
57312646 TTTAAGGTTTAGGG
1 TTTAAGGTTTAGGG
57312660 GTTAGGGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 2 0.09
14 18 0.78
15 3 0.13
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.43
Consensus pattern (15 bp):
TTTAAGGTTTAGGGA
Found at i:57312671 original size:21 final size:22
Alignment explanation
Indices: 57312630--57312680 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
57312620 TAAGGTTTAT
* *
57312630 GGTTTAAGGGTTGGGATTTAA-
1 GGTTTAGGGGTTGGGAGTTAAG
57312651 GGTTTAGGGGTTAGGG-GTTAAG
1 GGTTTAGGGGTT-GGGAGTTAAG
57312673 GGTTTAGG
1 GGTTTAGG
57312681 ATTCAGGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.20, C:0.00, G:0.45, T:0.35
Consensus pattern (22 bp):
GGTTTAGGGGTTGGGAGTTAAG
Found at i:57312688 original size:22 final size:21
Alignment explanation
Indices: 57312647--57312688 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
57312637 GGGTTGGGAT
*
57312647 TTAAGGTTTAGGGGTTAGGGG
1 TTAAGGTTTAGGGATTAGGGG
57312668 TTAAGGGTTTA-GGATTCAGGG
1 TTAA-GGTTTAGGGATT-AGGG
57312689 TTTAGGGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.21, C:0.02, G:0.43, T:0.33
Consensus pattern (21 bp):
TTAAGGTTTAGGGATTAGGGG
Found at i:57313359 original size:83 final size:83
Alignment explanation
Indices: 57313253--57313752 Score: 423
Period size: 84 Copynumber: 6.0 Consensus size: 83
57313243 GTTTTCAGAA
* * * ** *
57313253 AAAAACGCCGCAACTATGTATTAAAATTCCCCAAAACAGCGCTATTTCGCTATAAGAATTTAATT
1 AAAAACGCCGCAACTATGTATTAAAATTTCTCAAAACGGCGCCGTTTCACTATAAGAATTTAATT
57313318 TCTTAGTGGCGTTTTT-TT
66 T-TTAGTGGCGTTTTTATT
* * *
57313336 AAAAACGCCGCAACTATGTATTAAAATTTCTCAAAACGGCGCCGTTTCACCACAAGAATTAAATT
1 AAAAACGCCGCAACTATGTATTAAAATTTCTCAAAACGGCGCCGTTTCACTATAAGAATTTAA-T
*
57313401 TTTTAGTGGCGTTTTTACT
65 TTTTAGTGGCGTTTTTATT
* * * * * * * ** * *
57313420 GAAAATGCCGGAACTATGTATTCAAGTTTTTCTAAACGGCGCCGTTTCTGTTTAGGAATTTAAAT
1 AAAAACGCCGCAACTATGTATTAAAATTTCTCAAAACGGCGCCGTTTCACTATAAGAATTT-AAT
*
57313485 TTTTAGTGGCGTTTTT-TCG
65 TTTTAGTGGCGTTTTTAT-T
* * * * * * * * *
57313504 GAAAACGACGTAAATATGTATTAAAATTTATCAAAACGGCTCCGTTTCACTACAGGAATGTAATC
1 AAAAACGCCGCAACTATGTATTAAAATTTCTCAAAACGGCGCCGTTTCACTATAAGAATTTAAT-
* *
57313569 TTTTAGTGGGGTTTTTTGTT
65 TTTTAGTGGCG-TTTTTATT
* * ** ** * * * *
57313589 GAAAACGCTGCAAAAATGTATTAATGTTTCTCAAAACGTCGCTGTTTCTCT-TCAGAAATTTAAT
1 AAAAACGCCGCAACTATGTATTAAAATTTCTCAAAACGGCGCCGTTTCACTATAAG-AATTTAAT
**
57313653 TTTTAGTGGCGTTTTTACG
65 TTTTAGTGGCGTTTTTATT
* * * * *
57313672 AAAAACGCCGCAACTATATATTAAAGTTTCTTC-AAACGGCGTCGTTTCAGTATAGGAATTTAAT
1 AAAAACGCCGCAACTATGTATTAAAATTTC-TCAAAACGGCGCCGTTTCACTATAAGAATTTAAT
* *
57313736 TTTGTACTAGCGTTTTT
65 TTT-TAGTGGCGTTTTT
57313753 TGCGGAAAAC
Statistics
Matches: 330, Mismatches: 76, Indels: 21
0.77 0.18 0.05
Matches are distributed among these distances:
83 124 0.38
84 151 0.46
85 54 0.16
86 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (83 bp):
AAAAACGCCGCAACTATGTATTAAAATTTCTCAAAACGGCGCCGTTTCACTATAAGAATTTAATT
TTTAGTGGCGTTTTTATT
Found at i:57313551 original size:168 final size:168
Alignment explanation
Indices: 57313308--57313720 Score: 476
Period size: 168 Copynumber: 2.5 Consensus size: 168
57313298 TTCGCTATAA
* *
57313308 GAATTTAATTTCTTAGTGGCGTTTTTT-TAAAAACGCCGCAACTATGTATTAAAATTTCTCAAAA
1 GAATTTAATTT-TTAGTGGCGTTTTTTCGAAAAACGCCGCAACTATGTATTAAAATTTATCAAAA
* * * **
57313372 CGGCGCCGTTTCACCACAAGAAT-TAAATTTTTTAGTGGCG-TTTTTACTGAAAATGCCGGAACT
65 CGGCGCCGTTTCACCACAAGAATGT-AATCTTTTAGTGGCGTTTTTTACTGAAAACGCCGCAAAA
* * * *
57313435 ATGTATTCAA-GTTTTTCTAAACGGCGCCGTTTCTGTTTAG
129 ATGTATT-AATGTTTCTCAAAACGGCGCCGTTTCTCTTCAG
* * * *
57313475 GAATTTAAATTTTTAGTGGCGTTTTTTCGGAAAACGACGTAAATATGTATTAAAATTTATCAAAA
1 GAATTT-AATTTTTAGTGGCGTTTTTTCGAAAAACGCCGCAACTATGTATTAAAATTTATCAAAA
* * * * ** *
57313540 CGGCTCCGTTTCACTACAGGAATGTAATCTTTTAGTGGGGTTTTTTGTTGAAAACGCTGCAAAAA
65 CGGCGCCGTTTCACCACAAGAATGTAATCTTTTAGTGGCGTTTTTTACTGAAAACGCCGCAAAAA
* *
57313605 TGTATTAATGTTTCTCAAAACGTCGCTGTTTCTCTTCAG
130 TGTATTAATGTTTCTCAAAACGGCGCCGTTTCTCTTCAG
* * * * *
57313644 AAATTTAATTTTTAGTGGCGTTTTTACGAAAAACGCCGCAACTATATATTAAAGTTTCTTC-AAA
1 GAATTTAATTTTTAGTGGCGTTTTTTCGAAAAACGCCGCAACTATGTATTAAAATTT-ATCAAAA
*
57313708 CGGCGTCGTTTCA
65 CGGCGCCGTTTCA
57313721 GTATAGGAAT
Statistics
Matches: 205, Mismatches: 35, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
167 21 0.10
168 129 0.63
169 55 0.27
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.37
Consensus pattern (168 bp):
GAATTTAATTTTTAGTGGCGTTTTTTCGAAAAACGCCGCAACTATGTATTAAAATTTATCAAAAC
GGCGCCGTTTCACCACAAGAATGTAATCTTTTAGTGGCGTTTTTTACTGAAAACGCCGCAAAAAT
GTATTAATGTTTCTCAAAACGGCGCCGTTTCTCTTCAG
Found at i:57318910 original size:22 final size:21
Alignment explanation
Indices: 57318881--57318938 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 21
57318871 GAAAGGTATC
57318881 TACAAATCAAATCTCTAAGAT
1 TACAAATCAAATCTCTAAGAT
* **
57318902 TGCAAAATCGTATCTTCTAAGAT
1 TAC-AAATCAAATC-TCTAAGAT
*
57318925 TACATATCAAATCT
1 TACAAATCAAATCT
57318939 ATGATACATA
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
21 3 0.11
22 15 0.54
23 10 0.36
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.33
Consensus pattern (21 bp):
TACAAATCAAATCTCTAAGAT
Found at i:57326489 original size:21 final size:21
Alignment explanation
Indices: 57326465--57326517 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
57326455 AACTTAAAGT
57326465 AGAGGCAGCAGTAAGGGAAGC
1 AGAGGCAGCAGTAAGGGAAGC
* **
57326486 AGAGGTAGCAGCGAGGGAAGC
1 AGAGGCAGCAGTAAGGGAAGC
57326507 AGA-GCAG-AGTA
1 AGAGGCAGCAGTA
57326518 GAAAGTACGA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 2 0.08
20 3 0.12
21 21 0.81
ACGTcount: A:0.38, C:0.13, G:0.43, T:0.06
Consensus pattern (21 bp):
AGAGGCAGCAGTAAGGGAAGC
Found at i:57326924 original size:43 final size:43
Alignment explanation
Indices: 57326873--57327152 Score: 425
Period size: 43 Copynumber: 6.5 Consensus size: 43
57326863 AAAAGTGCCA
* * *
57326873 CTAAAGAACGTGACCTTTAACGGCGTTTGCTATAGAATCGCCG
1 CTAAAGAACATGACCTTTAGCGGCGTTTGCTATAGAAGCGCCG
* * * *
57326916 CTAAAGAACATGACCTTTAGCGGCATTTTCTATAGAAGCACCA
1 CTAAAGAACATGACCTTTAGCGGCGTTTGCTATAGAAGCGCCG
*
57326959 CTAAAGAACATGACCTTTAGCGGTGTTTGCTATAGAAGCGCCG
1 CTAAAGAACATGACCTTTAGCGGCGTTTGCTATAGAAGCGCCG
57327002 CTAAAGAACATGACCTTTAGCGGCGTTTGCTATAGAAGCGCCG
1 CTAAAGAACATGACCTTTAGCGGCGTTTGCTATAGAAGCGCCG
* * *
57327045 CTAAAGAACATGACATTTAACGGCGTTTGCTATAGAAGCGCCA
1 CTAAAGAACATGACCTTTAGCGGCGTTTGCTATAGAAGCGCCG
* * * *
57327088 CTAAAGAACATGACCTTTAGTGGCATTTTCTATAGAAGCACCG
1 CTAAAGAACATGACCTTTAGCGGCGTTTGCTATAGAAGCGCCG
57327131 CTAAAGAACATGACCTTTAGCG
1 CTAAAGAACATGACCTTTAGCG
57327153 ATGCTTATCT
Statistics
Matches: 213, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 213 1.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (43 bp):
CTAAAGAACATGACCTTTAGCGGCGTTTGCTATAGAAGCGCCG
Found at i:57332797 original size:27 final size:27
Alignment explanation
Indices: 57332721--57332825 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 27
57332711 AGCATGGTTT
* * *
57332721 GCCAAAACACATCTACGAGCATAGCTC
1 GCCAAAACATATCTACGAGCACAACTC
* * * * * *
57332748 G-CACATCAAACCTATGAACACAACTC
1 GCCAAAACATATCTACGAGCACAACTC
57332774 GCCAAAACATATCTACGAGCACAACTC
1 GCCAAAACATATCTACGAGCACAACTC
*
57332801 GCCAAAACATATCTACAAGCACAAC
1 GCCAAAACATATCTACGAGCACAAC
57332826 CACTAAGAAT
Statistics
Matches: 62, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
26 18 0.29
27 44 0.71
ACGTcount: A:0.42, C:0.33, G:0.10, T:0.14
Consensus pattern (27 bp):
GCCAAAACATATCTACGAGCACAACTC
Found at i:57342203 original size:39 final size:39
Alignment explanation
Indices: 57342160--57342280 Score: 197
Period size: 39 Copynumber: 3.1 Consensus size: 39
57342150 ATAGAAATCT
* *
57342160 GGTGATTATTTGGGCTATGTGCCTAGTAGGCTGTGTGCC
1 GGTGATTATTCGGGCTATGTGCCTAGTAGGCTATGTGCC
*
57342199 GGTGATTATTCGGGCTATGTGCCTAGTAGGCTTTGTGCC
1 GGTGATTATTCGGGCTATGTGCCTAGTAGGCTATGTGCC
* *
57342238 GGTGATTATTCAGGCTATGTGCCTAGCAGGCTATGTGCC
1 GGTGATTATTCGGGCTATGTGCCTAGTAGGCTATGTGCC
57342277 GGTG
1 GGTG
57342281 TATTGAAAAT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.14, C:0.17, G:0.35, T:0.34
Consensus pattern (39 bp):
GGTGATTATTCGGGCTATGTGCCTAGTAGGCTATGTGCC
Found at i:57342219 original size:23 final size:22
Alignment explanation
Indices: 57342188--57342260 Score: 59
Period size: 23 Copynumber: 3.5 Consensus size: 22
57342178 GTGCCTAGTA
*
57342188 GGCTGTGTGCCGGTGATTATTC
1 GGCTATGTGCCGGTGATTATTC
*
57342210 GGGCTATGTGCC--T-AGTA---
1 -GGCTATGTGCCGGTGATTATTC
*
57342227 GGCTTTGTGCCGGTGATTATTC
1 GGCTATGTGCCGGTGATTATTC
57342249 AGGCTATGTGCC
1 -GGCTATGTGCC
57342261 TAGCAGGCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
16 10 0.26
18 1 0.03
19 3 0.08
20 3 0.08
21 1 0.03
23 20 0.53
ACGTcount: A:0.12, C:0.19, G:0.34, T:0.34
Consensus pattern (22 bp):
GGCTATGTGCCGGTGATTATTC
Found at i:57346094 original size:14 final size:14
Alignment explanation
Indices: 57346075--57346102 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
57346065 TTTTTCTAAA
57346075 TCAAAACTCATTAG
1 TCAAAACTCATTAG
57346089 TCAAAACTCATTAG
1 TCAAAACTCATTAG
57346103 CGATTGGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (14 bp):
TCAAAACTCATTAG
Found at i:57349245 original size:17 final size:17
Alignment explanation
Indices: 57349225--57349258 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
57349215 AATATTAAGA
57349225 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
57349242 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
57349259 TTAATTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:57349264 original size:27 final size:27
Alignment explanation
Indices: 57349224--57349308 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 27
57349214 TAATATTAAG
* *
57349224 AATTTTATTAAATTATATATTTTATTA
1 AATTATATTAAATTATATATTATATTA
* *
57349251 AATTATATTTAATTATA-ATTATGTTA
1 AATTATATTAAATTATATATTATATTA
* *
57349277 AAATATGATTAAATTATTTATTAT-TTA
1 AATTAT-ATTAAATTATATATTATATTA
*
57349304 TATTA
1 AATTA
57349309 ATAATCTTAT
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
26 12 0.26
27 30 0.64
28 5 0.11
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.55
Consensus pattern (27 bp):
AATTATATTAAATTATATATTATATTA
Found at i:57355785 original size:26 final size:26
Alignment explanation
Indices: 57355756--57355814 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
57355746 TTTCCCCAGA
*
57355756 AAAATTTTGACGATTTTAACCCTAGT
1 AAAATTTTGACGATTTTAACCCTAAT
* **
57355782 AAAAATTTGACGATTTTTCCCCTAAT
1 AAAATTTTGACGATTTTAACCCTAAT
57355808 AAAATTT
1 AAAATTT
57355815 CGAGAAAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.39
Consensus pattern (26 bp):
AAAATTTTGACGATTTTAACCCTAAT
Found at i:57365508 original size:46 final size:44
Alignment explanation
Indices: 57365404--57365511 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
57365394 TGTCTTTGAC
** * * *
57365404 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
57365448 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
57365494 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
57365512 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:57372896 original size:46 final size:44
Alignment explanation
Indices: 57372792--57372899 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
57372782 TGTCTTTGAC
** * * *
57372792 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
57372836 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
57372882 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
57372900 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:57378985 original size:40 final size:39
Alignment explanation
Indices: 57378903--57379017 Score: 117
Period size: 40 Copynumber: 2.9 Consensus size: 39
57378893 GTGTTTGGAC
* * * *
57378903 AAAACGCCGCT-AAAATATAGCATTTGCGGCATATTTAT-A
1 AAAACACCGCTAAAAATAGAGCATTAGCGGCGT-TTT-TGA
* * *
57378942 AAAACGCTGCTAAAAATAGAGCATTAGTGGCGCTTTTTGA
1 AAAACACCGCTAAAAATAGAGCATTAGCGGCG-TTTTTGA
*
57378982 AAAATACCGCTAAAAATAGAGCATTAGCGGCGTTTT
1 AAAACACCGCTAAAAATAGAGCATTAGCGGCGTTTT
57379018 CCAAGAAGCG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
39 15 0.23
40 48 0.75
41 1 0.02
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (39 bp):
AAAACACCGCTAAAAATAGAGCATTAGCGGCGTTTTTGA
Found at i:57379037 original size:40 final size:40
Alignment explanation
Indices: 57378953--57379037 Score: 91
Period size: 40 Copynumber: 2.1 Consensus size: 40
57378943 AAACGCTGCT
* ** * *
57378953 AAAAATAGAGCATTAGTGGCGCTTTTTGAAAAATACCGCT
1 AAAAATAGAGCATTAGCGGCGCTTTTCCAAAAACACCGCA
* *
57378993 AAAAATAGAGCATTAGCGGCG-TTTTCCAAGAAGCGCCGCA
1 AAAAATAGAGCATTAGCGGCGCTTTTCCAA-AAACACCGCA
57379033 AAAAA
1 AAAAA
57379038 CCTAAGCCCT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
39 6 0.16
40 31 0.84
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.21
Consensus pattern (40 bp):
AAAAATAGAGCATTAGCGGCGCTTTTCCAAAAACACCGCA
Found at i:57379182 original size:41 final size:41
Alignment explanation
Indices: 57379061--57379293 Score: 191
Period size: 41 Copynumber: 5.7 Consensus size: 41
57379051 GAGCTTTCGA
* **
57379061 GGCTTTAGCGGCGTTTTTAAAAAAGCGTTGCTAATGCTCAA
1 GGCTTTAGCGGCGTTTTTAAAAAAGCGCTGCTAATGCTCGG
* * * *
57379102 GGCTTTAACTGTGTTTTTAAAAAAGC-ATCGCTAATGCTCGG
1 GGCTTTAGCGGCGTTTTTAAAAAAGCGCT-GCTAATGCTCGG
* * *
57379143 GGCTTTAGCGGCGTTTTTCAGAAAGCACTGCTAATGCTCGG
1 GGCTTTAGCGGCGTTTTTAAAAAAGCGCTGCTAATGCTCGG
** * ** * *
57379184 GATTTTAGCGGTGTTTTTAGGAAAGCGCCGCTAATGCTC-T
1 GGCTTTAGCGGCGTTTTTAAAAAAGCGCTGCTAATGCTCGG
*** *** * *
57379224 ATTTTTAGCGGCGTTTGCCAATAAGCGCAGCTAATGCTCGTG
1 GGCTTTAGCGGCGTTTTTAAAAAAGCGCTGCTAATGCTCG-G
* *
57379266 AGCTTTAGCGGCGTTTTTGAAAAAGCGC
1 GGCTTTAGCGGCGTTTTTAAAAAAGCGC
57379294 CGCAAAAGCC
Statistics
Matches: 151, Mismatches: 37, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
40 30 0.20
41 98 0.65
42 23 0.15
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (41 bp):
GGCTTTAGCGGCGTTTTTAAAAAAGCGCTGCTAATGCTCGG
Found at i:57379609 original size:14 final size:14
Alignment explanation
Indices: 57379590--57379623 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
57379580 TATCACTATA
* *
57379590 GTTTAGGGTTTTTG
1 GTTTAGGGTATATG
57379604 GTTTAGGGTATATG
1 GTTTAGGGTATATG
57379618 GTTTAG
1 GTTTAG
57379624 AATTTAAGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (14 bp):
GTTTAGGGTATATG
Found at i:57379843 original size:7 final size:7
Alignment explanation
Indices: 57379822--57380009 Score: 94
Period size: 7 Copynumber: 26.4 Consensus size: 7
57379812 TTAATTATCA
*
57379822 TTATAGT
1 TTATGGT
*
57379829 TTAGGGT
1 TTATGGT
57379836 TTATGGT
1 TTATGGT
*
57379843 TTAAGGT
1 TTATGGT
*
57379850 ATATGGT
1 TTATGGT
57379857 TTATGGT
1 TTATGGT
**
57379864 TTAAAGT
1 TTATGGT
*
57379871 TTAGGAGT
1 TTATG-GT
*
57379879 TACTAT--C
1 T--TATGGT
*
57379886 TTAAGGT
1 TTATGGT
*
57379893 TTATGGA
1 TTATGGT
*
57379900 TTATGGA
1 TTATGGT
57379907 TTATGGGT
1 TTAT-GGT
* *
57379915 TTAGGGA
1 TTATGGT
57379922 TTATGGT
1 TTATGGT
57379929 TTATGGT
1 TTATGGT
*
57379936 TTATAGT
1 TTATGGT
57379943 TTATGGT
1 TTATGGT
*
57379950 TTAAGGGT
1 TT-ATGGT
*
57379958 TGA-GGT
1 TTATGGT
*
57379964 TTAAGGT
1 TTATGGT
*
57379971 TTAGGGGT
1 TTA-TGGT
* *
57379979 TAAGGGT
1 TTATGGT
*
57379986 TTATGCT
1 TTATGGT
*
57379993 TTATGAT
1 TTATGGT
*
57380000 TTAGGGT
1 TTATGGT
57380007 TTA
1 TTA
57380010 GGAGTTAGGG
Statistics
Matches: 137, Mismatches: 35, Indels: 18
0.72 0.18 0.09
Matches are distributed among these distances:
5 2 0.01
6 5 0.04
7 110 0.80
8 18 0.13
10 2 0.01
ACGTcount: A:0.23, C:0.02, G:0.29, T:0.46
Consensus pattern (7 bp):
TTATGGT
Found at i:57379844 original size:14 final size:14
Alignment explanation
Indices: 57379822--57380038 Score: 100
Period size: 14 Copynumber: 15.2 Consensus size: 14
57379812 TTAATTATCA
*
57379822 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
*
57379836 TTATGGTTTAAGGT
1 TTATGGTTTAGGGT
* *
57379850 ATATGGTTTATGGT
1 TTATGGTTTAGGGT
**
57379864 TTAAAGTTTAGGAGT
1 TTATGGTTTAGG-GT
* *
57379879 TACTAT--CTTAAGGT
1 T--TATGGTTTAGGGT
* * *
57379893 TTATGGATTATGGA
1 TTATGGTTTAGGGT
*
57379907 TTATGGGTTTAGGGA
1 TTAT-GGTTTAGGGT
*
57379922 TTATGGTTTATGGT
1 TTATGGTTTAGGGT
* *
57379936 TTATAGTTTATGGT
1 TTATGGTTTAGGGT
* *
57379950 TTAAGGGTT-GAGGT
1 TTATGGTTTAG-GGT
*
57379964 TTAAGGTTTAGGGGT
1 TTATGGTTTA-GGGT
* * * *
57379979 TAAGGGTTTATGCT
1 TTATGGTTTAGGGT
*
57379993 TTATGATTTAGGGT
1 TTATGGTTTAGGGT
*
57380007 TTA-GGAGTTAGGGGT
1 TTATGG-TTTA-GGGT
* *
57380022 TAAAGGTTTAGGGT
1 TTATGGTTTAGGGT
57380036 TTA
1 TTA
57380039 GATTAATTAG
Statistics
Matches: 153, Mismatches: 38, Indels: 24
0.71 0.18 0.11
Matches are distributed among these distances:
12 3 0.02
13 1 0.01
14 105 0.69
15 39 0.25
16 3 0.02
17 2 0.01
ACGTcount: A:0.23, C:0.01, G:0.31, T:0.45
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:57379915 original size:22 final size:22
Alignment explanation
Indices: 57379890--57379958 Score: 86
Period size: 22 Copynumber: 3.2 Consensus size: 22
57379880 ACTATCTTAA
*
57379890 GGTTTATGGATTATGGATTATG
1 GGTTTATGGATTATGGTTTATG
*
57379912 GGTTTAGGGATTATGGTTTAT-
1 GGTTTATGGATTATGGTTTATG
* * *
57379933 GGTTTATAGTTTATGGTTTAAG
1 GGTTTATGGATTATGGTTTATG
57379955 GGTT
1 GGTT
57379959 GAGGTTTAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
21 17 0.43
22 23 0.57
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.48
Consensus pattern (22 bp):
GGTTTATGGATTATGGTTTATG
Found at i:57379988 original size:43 final size:44
Alignment explanation
Indices: 57379941--57380038 Score: 103
Period size: 43 Copynumber: 2.3 Consensus size: 44
57379931 ATGGTTTATA
* * *
57379941 GTTTATGGTTTAAGGGTTGA-GGTTTAAGG-TTTAGGGGTTAAGG
1 GTTTATGGTTTAAGGATTGAGGGTTT-AGGAGTTAGGGGTTAAAG
* * *
57379984 GTTTATGCTTT-ATGATTTAGGGTTTAGGAGTTAGGGGTTAAAG
1 GTTTATGGTTTAAGGATTGAGGGTTTAGGAGTTAGGGGTTAAAG
*
57380027 GTTTAGGGTTTA
1 GTTTATGGTTTA
57380039 GATTAATTAG
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
42 8 0.18
43 36 0.82
ACGTcount: A:0.21, C:0.01, G:0.36, T:0.42
Consensus pattern (44 bp):
GTTTATGGTTTAAGGATTGAGGGTTTAGGAGTTAGGGGTTAAAG
Found at i:57380010 original size:7 final size:7
Alignment explanation
Indices: 57379911--57380039 Score: 73
Period size: 7 Copynumber: 18.1 Consensus size: 7
57379901 TATGGATTAT
57379911 GGGTTTA
1 GGGTTTA
*
57379918 GGGATTA
1 GGGTTTA
*
57379925 TGGTTTA
1 GGGTTTA
*
57379932 TGGTTTA
1 GGGTTTA
**
57379939 TAGTTTA
1 GGGTTTA
*
57379946 TGGTTTAA
1 GGGTTT-A
*
57379954 GGGTTGA
1 GGGTTTA
57379961 -GGTTTA
1 GGGTTTA
*
57379967 AGGTTTA
1 GGGTTTA
*
57379974 GGGGTTAA
1 -GGGTTTA
57379982 GGGTTTA
1 GGGTTTA
* *
57379989 TGCTTTA
1 GGGTTTA
* *
57379996 TGATTTA
1 GGGTTTA
57380003 GGGTTTA
1 GGGTTTA
57380010 GGAG-TTA
1 GG-GTTTA
*
57380017 GGGGTTAA
1 -GGGTTTA
*
57380025 AGGTTTA
1 GGGTTTA
57380032 GGGTTTA
1 GGGTTTA
57380039 G
1 G
57380040 ATTAATTAGT
Statistics
Matches: 96, Mismatches: 20, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
6 5 0.05
7 76 0.79
8 15 0.16
ACGTcount: A:0.21, C:0.01, G:0.36, T:0.43
Consensus pattern (7 bp):
GGGTTTA
Found at i:57380876 original size:20 final size:20
Alignment explanation
Indices: 57380851--57380896 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
57380841 CTTCATCCCA
*
57380851 AAATTTCCGCCTGAGACCCT
1 AAATTTCCGCCTGAAACCCT
*
57380871 AAATTTCCGCCTGAAACCGT
1 AAATTTCCGCCTGAAACCCT
57380891 AAATTT
1 AAATTT
57380897 TTTCCCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.28
Consensus pattern (20 bp):
AAATTTCCGCCTGAAACCCT
Found at i:57380984 original size:13 final size:13
Alignment explanation
Indices: 57380968--57380996 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
57380958 CTATCTTATC
57380968 TTTCTTTCTTTTT
1 TTTCTTTCTTTTT
57380981 TTTCTTTCTTTTT
1 TTTCTTTCTTTTT
57380994 TTT
1 TTT
57380997 TTTTAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTCTTTCTTTTT
Found at i:57381000 original size:17 final size:17
Alignment explanation
Indices: 57380966--57380999 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
57380956 GTCTATCTTA
57380966 TCTTTCTTTCTTTTTTT
1 TCTTTCTTTCTTTTTTT
57380983 TCTTTCTTT-TTTTTTT
1 TCTTTCTTTCTTTTTTT
57380999 T
1 T
57381000 TAATTTTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (17 bp):
TCTTTCTTTCTTTTTTT
Found at i:57389704 original size:47 final size:48
Alignment explanation
Indices: 57389646--57389817 Score: 118
Period size: 47 Copynumber: 3.4 Consensus size: 48
57389636 AATAAAGTAG
57389646 ATTATAAATTAT-ATTTAATAATCATTATTTAAATTATATTTTATTGT
1 ATTATAAATTATGATTTAATAATCATTATTTAAATTATATTTTATTGT
* * * * *
57389693 ATTATATATTATGATTTTAATAAATTCATATAAGAATAAGAATTTTATTAAATTATATATT
1 ATTATAAATTATGA-TTTAAT-AA-TCAT-T---ATTTA-AATTATATT---TTAT-T-GT
*
57389754 ATTATTAAATTAT-ATTTAATAATAATTATTTTAAATTATATTTTA--GT
1 ATTA-TAAATTATGATTTAATAATCATTA-TTTAAATTATATTTTATTGT
*
57389801 ATTATATATTATGATTT
1 ATTATAAATTATGATTT
57389818 TATTAGTAAA
Statistics
Matches: 96, Mismatches: 12, Indels: 34
0.68 0.08 0.24
Matches are distributed among these distances:
46 7 0.07
47 20 0.21
48 1 0.01
49 6 0.06
50 2 0.02
51 7 0.07
52 1 0.01
54 9 0.09
55 5 0.05
56 8 0.08
57 1 0.01
58 3 0.03
59 6 0.06
60 7 0.07
61 6 0.06
62 7 0.07
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.53
Consensus pattern (48 bp):
ATTATAAATTATGATTTAATAATCATTATTTAAATTATATTTTATTGT
Found at i:57389748 original size:44 final size:41
Alignment explanation
Indices: 57389700--57389798 Score: 92
Period size: 44 Copynumber: 2.3 Consensus size: 41
57389690 TGTATTATAT
57389700 ATTATGATTTTAATAAATTCATATAAGAATAAGAATT-TTATTAA
1 ATTAT-ATTTTAATAAATT-ATAT-AGAATAAGAATTATT-TTAA
* ** *
57389744 ATTATATATTATTATTAAATTATATTTAATAATAATTATTTTAA
1 A-T-TATATT-TTAATAAATTATATAGAATAAGAATTATTTTAA
57389788 ATTATATTTTA
1 ATTATATTTTA
57389799 GTATTATATA
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
41 3 0.06
42 6 0.13
43 1 0.02
44 15 0.32
45 10 0.21
46 12 0.26
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (41 bp):
ATTATATTTTAATAAATTATATAGAATAAGAATTATTTTAA
Found at i:57389787 original size:26 final size:28
Alignment explanation
Indices: 57389733--57389796 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
57389723 TAAGAATAAG
* * *
57389733 AATTTTATTAAATTATATATTATTATTA
1 AATTATATTTAATAATATATTATTATTA
57389761 AATTATATTTAATAATA-ATTATT-TTA
1 AATTATATTTAATAATATATTATTATTA
57389787 AATTATATTT
1 AATTATATTT
57389797 TAGTATTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 13 0.39
27 6 0.18
28 14 0.42
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (28 bp):
AATTATATTTAATAATATATTATTATTA
Found at i:57389866 original size:108 final size:105
Alignment explanation
Indices: 57389646--57389905 Score: 301
Period size: 117 Copynumber: 2.3 Consensus size: 105
57389636 AATAAAGTAG
*
57389646 ATTA-TAAATTATATTTAATAATCATTATTTAAATTATATTTTATTGTATTATATATTATGATTT
1 ATTATTAAATTATATTTAATAATAATTATTTAAATTATATTTTA-TGTATTATATATTATGATTT
57389710 TAATAAATTCATATAAGAATAAGAATTTTATTAAATTATATATT
65 TAATAAATTCATATAAGAAT---AATTTTATTAAATTATATATT
57389754 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA-GTATTATATATTATGATTT
1 ATTATTAAATTATATTTAATAATAATTA-TTTAAATTATATTTTATGTATTATATATTATGATTT
57389818 TATTAGTAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATT
65 TA--A-TAAATTCATATAAG---A---A-T---AATTTTATTAAATTATATATT
* *
57389872 -TTATTAAATTATATTTTATAACAATTATGTTAAA
1 ATTATTAAATTATATTTAATAATAATTAT-TTAAA
57389906 ATATGATTAA
Statistics
Matches: 135, Mismatches: 4, Indels: 17
0.87 0.03 0.11
Matches are distributed among these distances:
108 25 0.19
109 22 0.16
110 17 0.13
111 14 0.10
114 1 0.01
116 1 0.01
117 31 0.23
118 24 0.18
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (105 bp):
ATTATTAAATTATATTTAATAATAATTATTTAAATTATATTTTATGTATTATATATTATGATTTT
AATAAATTCATATAAGAATAATTTTATTAAATTATATATT
Found at i:57389890 original size:15 final size:17
Alignment explanation
Indices: 57389852--57389885 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
57389842 TTTATTAACA
57389852 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
57389869 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
57389886 TTTATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:57389899 original size:16 final size:15
Alignment explanation
Indices: 57389852--57389899 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
57389842 TTTATTAACA
*
57389852 ATTTTATTAAATTATAT
1 ATTTTA-TAAAAT-TAT
*
57389869 ATTTTATTAAATTAT
1 ATTTTATAAAATTAT
57389884 ATTTTATAACAATTAT
1 ATTTTATAA-AATTAT
57389900 GTTAAAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.41
16 10 0.37
17 6 0.22
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTATAAAATTAT
Found at i:57390822 original size:42 final size:42
Alignment explanation
Indices: 57390672--57390923 Score: 184
Period size: 42 Copynumber: 6.0 Consensus size: 42
57390662 AAGATATATT
* * *
57390672 TTTAGCGGCGTTTGTGTGATAAGCGCCGCTAAAAGTCATGA-C
1 TTTAGTGGCGTTTTTGT-AAAAGCGCCGCTAAAAGTCATGACC
* ** * * * ** *
57390714 TATAGCAGCGTTGTGGGAAAAATGCCGCTAAAAGTCATGATC
1 TTTAGTGGCGTTTTTGTAAAAGCGCCGCTAAAAGTCATGACC
* ** * * * * *
57390756 TATAACGTCGTTTGTGGAAAAAGTGCCGCT-AAAGTCATAACC
1 TTTAGTGGCGTTT-TTGTAAAAGCGCCGCTAAAAGTCATGACC
* * * * * *
57390798 TATAGTGGTGTTTGTTGTATAAGTGTCGTTAAAAGTCATGACC
1 TTTAGTGGCGTTT-TTGTAAAAGCGCCGCTAAAAGTCATGACC
* * *
57390841 TTTAGTAGCGTTTTTGTAAAAGCACCGCTAAAAGTCATGGCC
1 TTTAGTGGCGTTTTTGTAAAAGCGCCGCTAAAAGTCATGACC
* *
57390883 TTTAGCGGCGTTTTTGTAAAAGCGCCGCTAAAGGTCATGAC
1 TTTAGTGGCGTTTTTGTAAAAGCGCCGCTAAAAGTCATGAC
57390924 TTTGAGTTTA
Statistics
Matches: 166, Mismatches: 41, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
41 20 0.12
42 111 0.67
43 35 0.21
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
TTTAGTGGCGTTTTTGTAAAAGCGCCGCTAAAAGTCATGACC
Found at i:57392680 original size:23 final size:22
Alignment explanation
Indices: 57392654--57392713 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
57392644 ATAAGTGCCA
57392654 CACTAATATGTAGCCGAAGCTAC
1 CACTAA-ATGTAGCCGAAGCTAC
* * *
57392677 CACTGACACGTAGCCGTAGCTAC
1 CACT-AAATGTAGCCGAAGCTAC
57392700 CACTGAAATGTAGC
1 CACT-AAATGTAGC
57392714 ACTGATATGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 30 0.97
24 1 0.03
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (22 bp):
CACTAAATGTAGCCGAAGCTAC
Found at i:57392726 original size:36 final size:36
Alignment explanation
Indices: 57392677--57392749 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
57392667 CCGAAGCTAC
57392677 CACTGACACGTAGCCGTAGCTACCACTGAAATGTAG
1 CACTGACACGTAGCCGTAGCTACCACTGAAATGTAG
* *
57392713 CACTGATATGTAGCCGTAGCTACCACTGAAATGTAG
1 CACTGACACGTAGCCGTAGCTACCACTGAAATGTAG
57392749 C
1 C
57392750 CGAAGCTACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (36 bp):
CACTGACACGTAGCCGTAGCTACCACTGAAATGTAG
Found at i:57392746 original size:23 final size:23
Alignment explanation
Indices: 57392713--57392764 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
57392703 TGAAATGTAG
* *
57392713 CACTGATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
57392736 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
57392759 CACTGA
1 CACTGA
57392765 TCAATAATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:57400847 original size:13 final size:13
Alignment explanation
Indices: 57400829--57400853 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57400819 AAAAGAATAA
57400829 TAATTGATAGATT
1 TAATTGATAGATT
57400842 TAATTGATAGAT
1 TAATTGATAGAT
57400854 CTAGCAAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (13 bp):
TAATTGATAGATT
Found at i:57415941 original size:15 final size:15
Alignment explanation
Indices: 57415917--57415946 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
57415907 TATGTAATTT
57415917 ATTAAATAAAAGAAA
1 ATTAAATAAAAGAAA
*
57415932 ATTAAGTAAAAGAAA
1 ATTAAATAAAAGAAA
57415947 GGAAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.10, T:0.20
Consensus pattern (15 bp):
ATTAAATAAAAGAAA
Found at i:57417774 original size:547 final size:547
Alignment explanation
Indices: 57416740--57417833 Score: 1814
Period size: 547 Copynumber: 2.0 Consensus size: 547
57416730 CTTAGGAATT
* * *
57416740 GATAGGACACAAATGACATGTCATTAAGGGTTATTGAGTTTTGGGTGCTGGTCTTGTATGTCTTA
1 GATAGGACACAAATGACATGTCATTAAGGGTTATTCAGGTTTGGGTGCTGGTCTTGTATGTCCTA
* * * *
57416805 TCGGTGGCTGACTTTTTGGCATGTGTTGAGGTTACTCGACAGCTTTTGTCAGCAGCACCGTGTAG
66 TCGATGGCTGACTTTTTGGCATGTCTTGAGGTTAATCGACAGCTTGTGTCAGCAGCACCGTGTAG
*
57416870 CTACATTTTGACCGTCAGCTTTTGTGAGCAGACCCAGTGATGGCTCGAAAGTGAGCATCTATATG
131 CTACATTTTGACCGTCAGCTTGTGTGAGCAGACCCAGTGATGGCTCGAAAGTGAGCATCTATATG
* * * *
57416935 AGATACGAGATTGAGGTGGTTTGGACGATGTATTGGCACTTAGTGTGCAAGACACCCAAGTATCC
196 AGATACGAGATTGAGGTGGTTTCGACCATGTATTGGCACTTAGTATACAAGACACCCAAGTATCC
* * *
57417000 GATAGTATTCCAAACGGTTCAACGAGCACAGTGTTGTTACGAGAAAGTATAAGTTCGATATGAAC
261 GATAATATTCCAAACGGTTCAACGAGCACAGTGTTGTTACGAGAAAGCATAAGCTCGATATGAAC
* *
57417065 TAGTATAGGTATGTATGTGAATCATGTGGTAATTGAATCTATGAGACTTGTGATTTCATAGTTAA
326 TAGTACAGATATGTATGTGAATCATGTGGTAATTGAATCTATGAGACTTGTGATTTCATAGTTAA
* * * *
57417130 CTTCGCTGGTGATTGTGTGTTAGGCTAATGAGGCTAAATTGAGTTGCATTATGATTTAATTTACT
391 CTTCGCTAGTGATTATGTGTTAGGCTAATGAGGCCAAATTGAGGTGCATTATGATTTAATTTACT
* *
57417195 TTCCTAAATTATGGTTGATTGGTAAGTTATATTTCCAGTTATGCGAACTTACTAAACTTAATTGC
456 CTCCTAAATTATGGTTGATTGGTAAGTTATATTTCCAGTTATGCAAACTTACTAAACTTAATTGC
57417260 TTACTTTGTTAATTTTTCTGTGTTTTA
521 TTACTTTGTTAATTTTTCTGTGTTTTA
* *
57417287 GATAGGACACAAATGACATGTCATTAAGGGTTATTCTGGTTTGGGTGCTTGTCTTGTATGTCCTA
1 GATAGGACACAAATGACATGTCATTAAGGGTTATTCAGGTTTGGGTGCTGGTCTTGTATGTCCTA
*
57417352 TCGATGGCTGACTTTTTGGCATTTCTTGAGGTTAATCGACAGCTTGTG-CGAGCAGCACCGTGTA
66 TCGATGGCTGACTTTTTGGCATGTCTTGAGGTTAATCGACAGCTTGTGTC-AGCAGCACCGTGTA
* * *
57417416 GCTACGTTTTGACCGTCAGCTTGTGTGATCAGACCCAGTGATGGCTCGAGAGTGAGCATCTATAT
130 GCTACATTTTGACCGTCAGCTTGTGTGAGCAGACCCAGTGATGGCTCGAAAGTGAGCATCTATAT
* *
57417481 GAGATATGAGATTGAGGTGGTTTCGACCATGTATTGGCACTTAGTATACCAGACACCCAAGTATC
195 GAGATACGAGATTGAGGTGGTTTCGACCATGTATTGGCACTTAGTATACAAGACACCCAAGTATC
* * *
57417546 CGATAATATTCCTAACGGTTCAACGAGTACAGTG-TGCTTACGAGAGAGCATAAGCTCGATATGA
260 CGATAATATTCCAAACGGTTCAACGAGCACAGTGTTG-TTACGAGAAAGCATAAGCTCGATATGA
*
57417610 ACTAGTACATATATGTATGTGAATCATGTGGTAATTGAATCTATGAGACTTGTGATTTCATAGTT
324 ACTAGTACAGATATGTATGTGAATCATGTGGTAATTGAATCTATGAGACTTGTGATTTCATAGTT
*
57417675 AACTTTGCTAGTGATTATGTGTTAGGCTAATGAGGCCAAATTGAGGTGCATTATGATTTAATTTA
389 AACTTCGCTAGTGATTATGTGTTAGGCTAATGAGGCCAAATTGAGGTGCATTATGATTTAATTTA
* *
57417740 CTCTCCTAAATTGTGGTTGATTGGTAAGTTATATTTCCAGTTATGCAAACTTACTAAGCTTAATT
454 CTCTCCTAAATTATGGTTGATTGGTAAGTTATATTTCCAGTTATGCAAACTTACTAAACTTAATT
57417805 GCTTACTTTGTTAATTTTTCTGTGTTTTA
519 GCTTACTTTGTTAATTTTTCTGTGTTTTA
57417834 TAGTGATTCG
Statistics
Matches: 507, Mismatches: 38, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
546 3 0.01
547 504 0.99
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.36
Consensus pattern (547 bp):
GATAGGACACAAATGACATGTCATTAAGGGTTATTCAGGTTTGGGTGCTGGTCTTGTATGTCCTA
TCGATGGCTGACTTTTTGGCATGTCTTGAGGTTAATCGACAGCTTGTGTCAGCAGCACCGTGTAG
CTACATTTTGACCGTCAGCTTGTGTGAGCAGACCCAGTGATGGCTCGAAAGTGAGCATCTATATG
AGATACGAGATTGAGGTGGTTTCGACCATGTATTGGCACTTAGTATACAAGACACCCAAGTATCC
GATAATATTCCAAACGGTTCAACGAGCACAGTGTTGTTACGAGAAAGCATAAGCTCGATATGAAC
TAGTACAGATATGTATGTGAATCATGTGGTAATTGAATCTATGAGACTTGTGATTTCATAGTTAA
CTTCGCTAGTGATTATGTGTTAGGCTAATGAGGCCAAATTGAGGTGCATTATGATTTAATTTACT
CTCCTAAATTATGGTTGATTGGTAAGTTATATTTCCAGTTATGCAAACTTACTAAACTTAATTGC
TTACTTTGTTAATTTTTCTGTGTTTTA
Found at i:57418104 original size:18 final size:19
Alignment explanation
Indices: 57418083--57418125 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
57418073 TTGTTTATGT
*
57418083 AATTTATTAAATAAA-AAA
1 AATTTAGTAAATAAAGAAA
*
57418101 AATTAAGTAAATAAAGTAAA
1 AATTTAGTAAATAAAG-AAA
57418121 AATTT
1 AATTT
57418126 CTTCTTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 13 0.65
20 7 0.35
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (19 bp):
AATTTAGTAAATAAAGAAA
Found at i:57418421 original size:31 final size:31
Alignment explanation
Indices: 57418386--57418449 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
57418376 TTTGTTATTA
*
57418386 GATAAACAAGTTTTGTACAGTGGTTTTGGTT
1 GATAAACAAGTTTTGTAAAGTGGTTTTGGTT
57418417 GATAAACAAGTTTTGTAAAGTGGTTTTGGTT
1 GATAAACAAGTTTTGTAAAGTGGTTTTGGTT
57418448 GA
1 GA
57418450 AAATGTTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.28, C:0.05, G:0.27, T:0.41
Consensus pattern (31 bp):
GATAAACAAGTTTTGTAAAGTGGTTTTGGTT
Found at i:57423983 original size:50 final size:50
Alignment explanation
Indices: 57423908--57424004 Score: 185
Period size: 50 Copynumber: 1.9 Consensus size: 50
57423898 GAGAGAGTAT
*
57423908 TAAGTTCGATATGAACTAGTACAGGTATGTATGTGAATCATGTGGTACTA
1 TAAGTTCAATATGAACTAGTACAGGTATGTATGTGAATCATGTGGTACTA
57423958 TAAGTTCAATATGAACTAGTACAGGTATGTATGTGAATCATGTGGTA
1 TAAGTTCAATATGAACTAGTACAGGTATGTATGTGAATCATGTGGTA
57424005 ACTAATCTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.34
Consensus pattern (50 bp):
TAAGTTCAATATGAACTAGTACAGGTATGTATGTGAATCATGTGGTACTA
Found at i:57438085 original size:20 final size:20
Alignment explanation
Indices: 57438029--57438108 Score: 90
Period size: 20 Copynumber: 3.9 Consensus size: 20
57438019 TTGTACGGGA
* *
57438029 TTGCACTTTGGTGCCTATGA
1 TTGCACTTTGGTGCCTCTGT
57438049 TTGCACATTT-GTGCCTCTGT
1 TTGCAC-TTTGGTGCCTCTGT
57438069 TTGCACTTTGGTGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
* *
57438089 TACGCATCTTTGATGCCTCT
1 T-TGCA-CTTTGGTGCCTCT
57438109 CATGTGGTGT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
19 3 0.06
20 31 0.60
21 6 0.12
22 12 0.23
ACGTcount: A:0.11, C:0.25, G:0.21, T:0.42
Consensus pattern (20 bp):
TTGCACTTTGGTGCCTCTGT
Found at i:57438956 original size:36 final size:36
Alignment explanation
Indices: 57438909--57438979 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
57438899 AAACATTTTG
57438909 TCTCATATAATATTCAGGTCAGAAGTCAATTAAACA
1 TCTCATATAATATTCAGGTCAGAAGTCAATTAAACA
57438945 TCTCATATAATATTCAGGTCAGAAGTCAATTAAAC
1 TCTCATATAATATTCAGGTCAGAAGTCAATTAAAC
57438980 TCATACATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (36 bp):
TCTCATATAATATTCAGGTCAGAAGTCAATTAAACA
Found at i:57440400 original size:41 final size:40
Alignment explanation
Indices: 57440329--57440464 Score: 145
Period size: 41 Copynumber: 3.5 Consensus size: 40
57440319 ACCAGTTTAG
* *
57440329 CACCCAGTGCCTCATCGGAT-AATTCGAAGTAGTAGATTGA
1 CACCTAGTGCCTCATCGAATAAATTCGAAGTAGTA-ATTGA
* * *
57440369 TACCTAGTGTCTCATCGAATAAATTCAAAGTAGTAAATTGA
1 CACCTAGTGCCTCATCGAATAAATTCGAAGTAGT-AATTGA
* * * *
57440410 CACCCAGTGTCTCATCGATTAAA-CCGAAGTA--AATTGA
1 CACCTAGTGCCTCATCGAATAAATTCGAAGTAGTAATTGA
57440447 CACCTAGTGCCTCATCGA
1 CACCTAGTGCCTCATCGA
57440465 CTCGAAGTCG
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
37 22 0.27
40 22 0.27
41 37 0.45
42 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (40 bp):
CACCTAGTGCCTCATCGAATAAATTCGAAGTAGTAATTGA
Found at i:57441494 original size:19 final size:20
Alignment explanation
Indices: 57441462--57441500 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
57441452 AAACATGTTT
*
57441462 TATTAATATATACATATGTA
1 TATTAATATATACACATGTA
*
57441482 TATTAA-ATTTACACATGTA
1 TATTAATATATACACATGTA
57441501 ATCACTAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.44
Consensus pattern (20 bp):
TATTAATATATACACATGTA
Found at i:57442780 original size:20 final size:19
Alignment explanation
Indices: 57442755--57442824 Score: 68
Period size: 19 Copynumber: 3.4 Consensus size: 19
57442745 CTGGGAAGGG
57442755 AAAGAATAAGAAAAAGGAAA
1 AAAGAA-AAGAAAAAGGAAA
57442775 AAAGAAGAAGGGAAAATAGGAAA
1 AAAGAA-AA--GAAAA-AGGAAA
* * *
57442798 AAAGTAAATAAAAAAGAAA
1 AAAGAAAAGAAAAAGGAAA
57442817 AAAGAAAA
1 AAAGAAAA
57442825 TAAATATTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
19 12 0.29
20 12 0.29
22 7 0.17
23 11 0.26
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.06
Consensus pattern (19 bp):
AAAGAAAAGAAAAAGGAAA
Found at i:57443487 original size:20 final size:20
Alignment explanation
Indices: 57443462--57443510 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
57443452 TTGCTGCAGC
57443462 AACTAAATCAAGCAAACAAA
1 AACTAAATCAAGCAAACAAA
* *
57443482 AACTAAATCAATCAAACAAC
1 AACTAAATCAAGCAAACAAA
57443502 AAC-AAATCA
1 AACTAAATCA
57443511 TGTAGCAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 6 0.22
20 21 0.78
ACGTcount: A:0.63, C:0.22, G:0.02, T:0.12
Consensus pattern (20 bp):
AACTAAATCAAGCAAACAAA
Found at i:57454045 original size:87 final size:87
Alignment explanation
Indices: 57453893--57454438 Score: 878
Period size: 87 Copynumber: 6.3 Consensus size: 87
57453883 ACTAGTTCTT
*** * * * *
57453893 AGGAAGGCAAGATCTGCTATCTTTAGTTAGCTCTATTACAACCGATGGAGGCAAGGCTTCGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAATGCAACCGATGGAGGCAAGGCTTCATTTT
* * *
57453958 CGATCTACTTTGCTGTTAATAC
66 CGATCTGCTTCGCTGTTAATGC
* * *
57453980 AGAAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGTAACCGATGGAGGCAAGGCTTCATTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAATGCAACCGATGGAGGCAAGGCTTCATTTT
57454045 CGATCTGCTTCGCTGTTAATGC
66 CGATCTGCTTCGCTGTTAATGC
* * *
57454067 AGGAAGGCAAGATCTGCTATATTTAACCAGCTCCAATGCAACCGATGGATGCAAGGCTTCGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAATGCAACCGATGGAGGCAAGGCTTCATTTT
* * * *
57454132 TGATCTACTTCGTTGTTAATTC
66 CGATCTGCTTCGCTGTTAATGC
*
57454154 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAATGCAACCGATGGAGGCAAGGCTTCGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAATGCAACCGATGGAGGCAAGGCTTCATTTT
57454219 CGATCTGCTTCGCTGTTAATGC
66 CGATCTGCTTCGCTGTTAATGC
57454241 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAATGCAACCGATGGAGGCAAGGCTTCATTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAATGCAACCGATGGAGGCAAGGCTTCATTTT
57454306 CGATCTGCTTCGCTGTTAATGC
66 CGATCTGCTTCGCTGTTAATGC
*
57454328 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAATGCAACTGATGGAGGCAAGGCTTCATTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAATGCAACCGATGGAGGCAAGGCTTCATTTT
57454393 CGATCTGCTTCGCTGTTAATGC
66 CGATCTGCTTCGCTGTTAATGC
*
57454415 AGGAAGGCAAGATCTGAT-TCTTTA
1 AGGAAGGCAAGATCTGCTATCTTTA
57454439 CTAATCTGTT
Statistics
Matches: 428, Mismatches: 31, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
86 6 0.01
87 422 0.99
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (87 bp):
AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAATGCAACCGATGGAGGCAAGGCTTCATTTT
CGATCTGCTTCGCTGTTAATGC
Found at i:57460736 original size:18 final size:18
Alignment explanation
Indices: 57460715--57460761 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
57460705 TATTAAAATT
57460715 TAATGAATTATAAAATAA
1 TAATGAATTATAAAATAA
57460733 TAATGATATTA-AAAATAA
1 TAATGA-ATTATAAAATAA
*
57460751 T-ATAAATTATA
1 TAATGAATTATA
57460762 TGATATAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 4 0.15
17 4 0.15
18 14 0.54
19 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (18 bp):
TAATGAATTATAAAATAA
Found at i:57463447 original size:20 final size:20
Alignment explanation
Indices: 57463424--57463495 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
57463414 AAAAATTACA
*
57463424 AAATAATCAAAATAATTTTC
1 AAATATTCAAAATAATTTTC
*
57463444 AAATATTCAAAATAATTTTT
1 AAATATTCAAAATAATTTTC
*
57463464 AAA-ATTCAAAAT-ATTTATA
1 AAATATTCAAAATAATTT-TC
*
57463483 AAATTTTCAAAAT
1 AAATATTCAAAAT
57463496 TTATATTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
18 4 0.09
19 13 0.28
20 29 0.63
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (20 bp):
AAATATTCAAAATAATTTTC
Found at i:57466392 original size:26 final size:26
Alignment explanation
Indices: 57466359--57466409 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
57466349 TATAGAAGAA
57466359 AATTATGTTAAAATATTTATTTAAAG
1 AATTATGTTAAAATATTTATTTAAAG
* *
57466385 AATTATGTTTAAATCTTTATTTAAA
1 AATTATGTTAAAATATTTATTTAAA
57466410 TTTAAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (26 bp):
AATTATGTTAAAATATTTATTTAAAG
Found at i:57469553 original size:17 final size:17
Alignment explanation
Indices: 57469531--57469567 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
57469521 TCTAAGCGTG
*
57469531 GAAAGAAGGAATAAAAT
1 GAAAGAAGGAAAAAAAT
*
57469548 GAAAGAATGAAAAAAAT
1 GAAAGAAGGAAAAAAAT
57469565 GAA
1 GAA
57469568 TGGATACGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.22, T:0.11
Consensus pattern (17 bp):
GAAAGAAGGAAAAAAAT
Found at i:57473657 original size:16 final size:15
Alignment explanation
Indices: 57473632--57473661 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
57473622 ATTAAATTCA
57473632 TTAACTAAATACAAG
1 TTAACTAAATACAAG
57473647 TTAATCTAAATACAA
1 TTAA-CTAAATACAA
57473662 ATGAAGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.53, C:0.13, G:0.03, T:0.30
Consensus pattern (15 bp):
TTAACTAAATACAAG
Found at i:57490617 original size:27 final size:27
Alignment explanation
Indices: 57490586--57490763 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
57490576 TAAATTGTAC
57490586 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
57490613 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57490639 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
57490667 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
57490695 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57490722 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
57490749 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
57490764 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:57490700 original size:82 final size:81
Alignment explanation
Indices: 57490587--57490742 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
57490577 AAATTGTACA
* *
57490587 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
57490651 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
57490668 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
57490733 TGCGAGTTGA
65 TGCGAATTGA
57490743 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:57490754 original size:82 final size:81
Alignment explanation
Indices: 57490583--57490763 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
57490573 GATTAAATTG
* *
57490583 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
57490648 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
57490664 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
57490728 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
57490746 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
57490764 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:57492872 original size:12 final size:12
Alignment explanation
Indices: 57492855--57492879 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57492845 AATTTAATAT
57492855 ATTTAATATTAA
1 ATTTAATATTAA
57492867 ATTTAATATTAA
1 ATTTAATATTAA
57492879 A
1 A
57492880 GTAGTTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:57493230 original size:39 final size:39
Alignment explanation
Indices: 57493176--57493253 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
57493166 AGTTGAAGCG
57493176 TTCATCCTGAATGAATCGAAAAATGAAAAGTTTTAATTA
1 TTCATCCTGAATGAATCGAAAAATGAAAAGTTTTAATTA
57493215 TTCATCCTGAATGAATCGAAAAATGAAAAGTTTTAATTA
1 TTCATCCTGAATGAATCGAAAAATGAAAAGTTTTAATTA
57493254 AGTGTTTATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.33
Consensus pattern (39 bp):
TTCATCCTGAATGAATCGAAAAATGAAAAGTTTTAATTA
Found at i:57501433 original size:56 final size:56
Alignment explanation
Indices: 57501373--57501482 Score: 143
Period size: 54 Copynumber: 2.0 Consensus size: 56
57501363 ATTTAGTTCG
*
57501373 TAGATTGTAAATAGATATATATTATTGATATGAAATAAAATACAA-AA-TTTTTTTCT
1 TAGATTGTAAATA-A-ATATATTATTGATATAAAATAAAATACAACAACTTTTTTTCT
* * * *
57501429 TAGATTGTAAATAAGTATATTATTGATGTAAAATACAATATAACAACTTTTTTT
1 TAGATTGTAAATAAATATATTATTGATATAAAATAAAATACAACAACTTTTTTT
57501483 TATATAGCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
54 24 0.51
55 3 0.06
56 20 0.43
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.43
Consensus pattern (56 bp):
TAGATTGTAAATAAATATATTATTGATATAAAATAAAATACAACAACTTTTTTTCT
Found at i:57501498 original size:56 final size:54
Alignment explanation
Indices: 57501390--57501518 Score: 127
Period size: 54 Copynumber: 2.4 Consensus size: 54
57501380 TAAATAGATA
* * * *
57501390 TATATTATTGATATGAAATAAAATACAAAATTTTTTTCTTAGATTGTAAATAAG
1 TATATTATTGATGTAAAATAAAATACAAAACTTTTTTCTTAGATAGTAAATAAG
* * *
57501444 TATATTATTGATGTAAAATACAATATAACAACTTTTTT-TTATATAGCTAGAATAAG
1 TATATTATTGATGTAAAATAAAATACAA-AACTTTTTTCTTAGATAG-TA-AATAAG
* *
57501500 TACT-TTATGGATGAAAAAT
1 TA-TATTATTGATGTAAAAT
57501519 TTTAATATAA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
54 30 0.48
55 10 0.16
56 21 0.34
57 1 0.02
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.41
Consensus pattern (54 bp):
TATATTATTGATGTAAAATAAAATACAAAACTTTTTTCTTAGATAGTAAATAAG
Found at i:57505424 original size:373 final size:375
Alignment explanation
Indices: 57505000--57505686 Score: 1216
Period size: 374 Copynumber: 1.8 Consensus size: 375
57504990 TATTAATAAA
*
57505000 AAAAACTTGAAGTAATATGAAATAAAAAATAGAAATGTGAGTAGTAGAAGAATCAAACTCAACCA
1 AAAAACTTGAAGCAATATGAAATAAAAAATAGAAATGTGAGTAGTAGAAGAATCAAACTCAACCA
* * *
57505065 GGGGCGAAGGCAGAACAATTTTTTAGCAGGGTCCGAATGAAATTTTAA-TTTTTTTATTGTCTAT
66 GGGGCAAAGCCAAAACAATTTTTTAGCAGGGTCCGAATGAAATTTTAATTTTTTTTATTGTCTAT
57505129 ATCTTTATCATTTTTAAAGGATTAAATCGAATTTTTATAATTTTAAGGAGGCCAAAGTGCAATTT
131 ATCTTTATCATTTTTAAAGGATTAAATCGAATTTTTATAATTTTAAGGAGGCCAAAGTGCAATTT
57505194 TACATTTACTAATTTAAAAATTTTAAAAAATTAAGGGCCTAAATAATAATTTTCTATTTTAAGGA
196 TACATTTACTAATTTAAAAATTTTAAAAAATTAAGGGCCTAAATAATAATTTTCTATTTTAAGGA
*
57505259 GTCTAGCACCCTGCCAACCCCTCTAGATTCACCTCTAAACTCAAGACTCAAAGATGTAATTACAA
261 GTCGAGCACCCTGCCAACCCCTCTAGATTCACCTCTAAACTCAAGACTCAAAGATGTAATTACAA
57505324 CTATCTAACAAAAGAACTAATATATTAAAAAAAATATTAATTAAAAATTT
326 CTATCTAACAAAAGAACTAATATATTAAAAAAAATATTAATTAAAAATTT
* *
57505374 AAAAGCTTGAAGCAAT-TGAAATAAAAAATAGAAATGTGAGTAGTAGAAGAATCGAACTCAACCA
1 AAAAACTTGAAGCAATATGAAATAAAAAATAGAAATGTGAGTAGTAGAAGAATCAAACTCAACCA
* *
57505438 GGGGCAAAGCCAAAATAATTTTTTAGCGGGGTCCGAATGAAATTTTAATTTTTTTTATTGTCTAT
66 GGGGCAAAGCCAAAACAATTTTTTAGCAGGGTCCGAATGAAATTTTAATTTTTTTTATTGTCTAT
* *
57505503 ATCTTTATCATTTTTAAAGGATTAAATCGAATTTTTATAATTTTAAGGAGGCTAAAGTGTAATTT
131 ATCTTTATCATTTTTAAAGGATTAAATCGAATTTTTATAATTTTAAGGAGGCCAAAGTGCAATTT
* * * *
57505568 TACATTTACTAATTTAAAATTTTTTAAAATTTAAGGGCCTAAATAGTAATTTTCTATTTTAAGGA
196 TACATTTACTAATTTAAAAATTTTAAAAAATTAAGGGCCTAAATAATAATTTTCTATTTTAAGGA
*
57505633 GTCGAGCACCTTGCCAACCCCTCTAGATTCACCTCTAAACTCAAGACTCAAAGA
261 GTCGAGCACCCTGCCAACCCCTCTAGATTCACCTCTAAACTCAAGACTCAAAGA
57505687 AAAAATACTA
Statistics
Matches: 296, Mismatches: 16, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
373 90 0.30
374 206 0.70
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (375 bp):
AAAAACTTGAAGCAATATGAAATAAAAAATAGAAATGTGAGTAGTAGAAGAATCAAACTCAACCA
GGGGCAAAGCCAAAACAATTTTTTAGCAGGGTCCGAATGAAATTTTAATTTTTTTTATTGTCTAT
ATCTTTATCATTTTTAAAGGATTAAATCGAATTTTTATAATTTTAAGGAGGCCAAAGTGCAATTT
TACATTTACTAATTTAAAAATTTTAAAAAATTAAGGGCCTAAATAATAATTTTCTATTTTAAGGA
GTCGAGCACCCTGCCAACCCCTCTAGATTCACCTCTAAACTCAAGACTCAAAGATGTAATTACAA
CTATCTAACAAAAGAACTAATATATTAAAAAAAATATTAATTAAAAATTT
Found at i:57509119 original size:3 final size:3
Alignment explanation
Indices: 57509111--57509144 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
57509101 ACAAGAACAA
57509111 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
57509145 GCCAAATTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:57520483 original size:56 final size:56
Alignment explanation
Indices: 57520423--57520544 Score: 142
Period size: 55 Copynumber: 2.2 Consensus size: 56
57520413 ATAAAATCGA
* * *
57520423 AAAAAAAGTTTT-TGAGGTTTAGGATGAATTAAAAGTTTT-GAGGGAAAGAAAAAGG
1 AAAAAAAGTTTTGGGAGGTTT-GGACGAAGTAAAAGTTTTGGAGGGAAAGAAAAAGG
* * * *
57520478 AAAAAAAGTTTTGGGGGGTTTGGGCGAAGTAAAAGTTTTGGGGGGAAAGTAAAAGG
1 AAAAAAAGTTTTGGGAGGTTTGGACGAAGTAAAAGTTTTGGAGGGAAAGAAAAAGG
*
57520534 -GAAAAAGTTTT
1 AAAAAAAGTTTT
57520545 AGGGTTTGGG
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
55 37 0.65
56 20 0.35
ACGTcount: A:0.41, C:0.01, G:0.32, T:0.26
Consensus pattern (56 bp):
AAAAAAAGTTTTGGGAGGTTTGGACGAAGTAAAAGTTTTGGAGGGAAAGAAAAAGG
Found at i:57521674 original size:10 final size:10
Alignment explanation
Indices: 57521659--57521683 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
57521649 TTTATAATAA
57521659 ATTTTGATTT
1 ATTTTGATTT
57521669 ATTTTGATTT
1 ATTTTGATTT
57521679 ATTTT
1 ATTTT
57521684 CAACAGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (10 bp):
ATTTTGATTT
Found at i:57523064 original size:5 final size:5
Alignment explanation
Indices: 57523054--57523078 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
57523044 GCATTTGAGC
57523054 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
57523079 CTTAGTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:57527829 original size:33 final size:33
Alignment explanation
Indices: 57527787--57527852 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
57527777 TCTTTGAAGT
57527787 AGATAAAGAGGTGTCAATCATCCTAGAAAGGCC
1 AGATAAAGAGGTGTCAATCATCCTAGAAAGGCC
* *
57527820 AGATAAAGAGTTGTCAATCATCCTAGGAAGGCC
1 AGATAAAGAGGTGTCAATCATCCTAGAAAGGCC
57527853 TTTCCTAGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (33 bp):
AGATAAAGAGGTGTCAATCATCCTAGAAAGGCC
Found at i:57531343 original size:21 final size:22
Alignment explanation
Indices: 57531319--57531365 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
57531309 AATTGAACTA
*
57531319 TTTTCA-AAATTTGAT-TGCTCT
1 TTTTCAGAAATTAGATGT-CTCT
*
57531340 TTTTTAGAAATTAGATGTCTCT
1 TTTTCAGAAATTAGATGTCTCT
57531362 TTTT
1 TTTT
57531366 GTAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 5 0.23
22 16 0.73
23 1 0.05
ACGTcount: A:0.23, C:0.11, G:0.11, T:0.55
Consensus pattern (22 bp):
TTTTCAGAAATTAGATGTCTCT
Found at i:57532181 original size:25 final size:25
Alignment explanation
Indices: 57532153--57532200 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
57532143 ATTTTTTCTC
*
57532153 TTAAATTTT-AATTTTATTTAATTAT
1 TTAAATTTTCAA-TTTATTGAATTAT
*
57532178 TTAATTTTTCAATTTATTGAATT
1 TTAAATTTTCAATTTATTGAATT
57532201 GTTAATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
TTAAATTTTCAATTTATTGAATTAT
Found at i:57538057 original size:22 final size:20
Alignment explanation
Indices: 57538013--57538058 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
57538003 TCGTTTTACG
*
57538013 TATTTAATTTTGGTTTTCTT
1 TATTTAATTTTGCTTTTCTT
*
57538033 TATTTACTTGTTGCTTTTCCTT
1 TATTTAATT-TTGCTTTT-CTT
57538055 TATT
1 TATT
57538059 CAATCAACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.36
21 7 0.32
22 7 0.32
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (20 bp):
TATTTAATTTTGCTTTTCTT
Found at i:57538935 original size:51 final size:51
Alignment explanation
Indices: 57538873--57538970 Score: 178
Period size: 51 Copynumber: 1.9 Consensus size: 51
57538863 TGGTAGGCTC
57538873 ACAGTTTTGTAGACCTTGCATATTTGGTGAGCTCGCAGGTTTAGTGAACAT
1 ACAGTTTTGTAGACCTTGCATATTTGGTGAGCTCGCAGGTTTAGTGAACAT
* *
57538924 ACAGTTTTGTAGAGCTTGCATATTTGGTTAGCTCGCAGGTTTAGTGA
1 ACAGTTTTGTAGACCTTGCATATTTGGTGAGCTCGCAGGTTTAGTGA
57538971 GCTCACAATT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.37
Consensus pattern (51 bp):
ACAGTTTTGTAGACCTTGCATATTTGGTGAGCTCGCAGGTTTAGTGAACAT
Found at i:57539647 original size:20 final size:19
Alignment explanation
Indices: 57539624--57539663 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
57539614 TAGTTTTTCC
*
57539624 TTTTCTTCTTTGTTACTTTT
1 TTTTCTTCTTCGTT-CTTTT
57539644 TTTTCTTCTTCGTTCTTTT
1 TTTTCTTCTTCGTTCTTTT
57539663 T
1 T
57539664 CGATTCATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.03, C:0.17, G:0.05, T:0.75
Consensus pattern (19 bp):
TTTTCTTCTTCGTTCTTTT
Done.