Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 187 of 187
Found at i:57545468 original size:21 final size:22
Alignment explanation
Indices: 57545422--57545473 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
57545412 CTTCTTTAGT
*
57545422 TTTTCCTTTTCTTCTTTGTTAC
1 TTTTCGTTTTCTTCTTTGTTAC
57545444 TTTT-GTTTTCTTCTTTGTT-C
1 TTTTCGTTTTCTTCTTTGTTAC
57545464 TTTTTCGTTT
1 -TTTTCGTTT
57545474 ATTTTATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 1 0.04
21 18 0.67
22 8 0.30
ACGTcount: A:0.02, C:0.17, G:0.08, T:0.73
Consensus pattern (22 bp):
TTTTCGTTTTCTTCTTTGTTAC
Found at i:57549827 original size:22 final size:21
Alignment explanation
Indices: 57549784--57549827 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
57549774 GTAAAGTAAA
*
57549784 TTTTATTGTTTTGCCATTATT
1 TTTTATTGTTTTGCCATCATT
*
57549805 TTTTCATTGTTTTGCTATCATT
1 TTTT-ATTGTTTTGCCATCATT
57549827 T
1 T
57549828 CGCTATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.14, C:0.11, G:0.09, T:0.66
Consensus pattern (21 bp):
TTTTATTGTTTTGCCATCATT
Found at i:57555101 original size:12 final size:13
Alignment explanation
Indices: 57555084--57555120 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
57555074 GAACCGGACA
57555084 CGAACCGAA-CTC
1 CGAACCGAAGCTC
57555096 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
57555108 CGAACCGTAGCTC
1 CGAACCGAAGCTC
57555121 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:57565053 original size:66 final size:66
Alignment explanation
Indices: 57564947--57565072 Score: 216
Period size: 66 Copynumber: 1.9 Consensus size: 66
57564937 GTTTATATTA
* * *
57564947 CAGGGGATTTAGCCTGGACTAGTAATCCCGCTGTAAGGATGAGGTTTGCGGGAGTGTGCTATCTT
1 CAGGGGATTTAGCCTGGAATAGTAATCCCACTGTAAGGATGAGGTTCGCGGGAGTGTGCTATCTT
57565012 G
66 G
*
57565013 CAGGGGATTTAGCCTGGAATGGTAATCCCACTGTAAGGATGAGGTTCGCGGGAGTGTGCT
1 CAGGGGATTTAGCCTGGAATAGTAATCCCACTGTAAGGATGAGGTTCGCGGGAGTGTGCT
57565073 CTCTGAAATG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.21, C:0.17, G:0.36, T:0.27
Consensus pattern (66 bp):
CAGGGGATTTAGCCTGGAATAGTAATCCCACTGTAAGGATGAGGTTCGCGGGAGTGTGCTATCTT
G
Found at i:57571242 original size:106 final size:106
Alignment explanation
Indices: 57571057--57571264 Score: 362
Period size: 106 Copynumber: 2.0 Consensus size: 106
57571047 GGATTTGCTA
*
57571057 TTTGGGAGAGGAAGAACTTAAACCCTACGCTTGACGACCCTAGAAAGTCATTTAGGTGGGAATTA
1 TTTGGGAGAGGAAGAACTTAAACCCTACGCTTGACGACCCTAGAAAGCCATTTAGGTGGGAATTA
*
57571122 ACCCAAAATTGGTATGGCTTATCTGTGAACACCTTAAGCTG
66 ACCCAAAATTGGTATGGCTTACCTGTGAACACCTTAAGCTG
* * * *
57571163 TTTGGGAGAGGAAGAACTTAAACCTTAGGCTTGACGACCTTAGGAAGCCATTTAGGTGGGAATTA
1 TTTGGGAGAGGAAGAACTTAAACCCTACGCTTGACGACCCTAGAAAGCCATTTAGGTGGGAATTA
57571228 ACCCAAAATTGGTATGGCTTACCTGTGAACACCTTAA
66 ACCCAAAATTGGTATGGCTTACCTGTGAACACCTTAA
57571265 CCCCGGACTA
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
106 96 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (106 bp):
TTTGGGAGAGGAAGAACTTAAACCCTACGCTTGACGACCCTAGAAAGCCATTTAGGTGGGAATTA
ACCCAAAATTGGTATGGCTTACCTGTGAACACCTTAAGCTG
Found at i:57576441 original size:48 final size:48
Alignment explanation
Indices: 57576381--57576483 Score: 147
Period size: 48 Copynumber: 2.1 Consensus size: 48
57576371 TTATCATATG
* *
57576381 GGTTTAACCCTAACAGGTAA-CAAGACACTATTATTCACTATTCAG-GTA
1 GGTTTATCCCTAACAAGTAACCAA-ACACTATTATTCACTATTC-GTGTA
*
57576429 GGTTTATCCCTAACAAGTAACCAAACACTATTATTCATTATTCGTGTA
1 GGTTTATCCCTAACAAGTAACCAAACACTATTATTCACTATTCGTGTA
57576477 GGTTTAT
1 GGTTTAT
57576484 GTAAACTCAA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
47 1 0.02
48 46 0.92
49 3 0.06
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (48 bp):
GGTTTATCCCTAACAAGTAACCAAACACTATTATTCACTATTCGTGTA
Found at i:57578847 original size:21 final size:21
Alignment explanation
Indices: 57578818--57578858 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
57578808 AATCTTGTTA
*
57578818 TTCTTCAGCAACAACTTCCTC
1 TTCTGCAGCAACAACTTCCTC
*
57578839 TTCTGCAGCAGCAACTTCCT
1 TTCTGCAGCAACAACTTCCT
57578859 TCCATCAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.37, G:0.10, T:0.32
Consensus pattern (21 bp):
TTCTGCAGCAACAACTTCCTC
Found at i:57596360 original size:48 final size:48
Alignment explanation
Indices: 57596287--57596381 Score: 163
Period size: 48 Copynumber: 2.0 Consensus size: 48
57596277 GAAGATAGGG
* *
57596287 TTTTAATTAGAAAAAGATTTTAATTAATCAACCTAGAGTTAGTTGCTC
1 TTTTAATAAGAAAAAGATTTCAATTAATCAACCTAGAGTTAGTTGCTC
*
57596335 TTTTAATAAGAAAGAGATTTCAATTAATCAACCTAGAGTTAGTTGCT
1 TTTTAATAAGAAAAAGATTTCAATTAATCAACCTAGAGTTAGTTGCT
57596382 TCTACTCTTG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (48 bp):
TTTTAATAAGAAAAAGATTTCAATTAATCAACCTAGAGTTAGTTGCTC
Found at i:57599210 original size:30 final size:30
Alignment explanation
Indices: 57599139--57599235 Score: 87
Period size: 30 Copynumber: 3.3 Consensus size: 30
57599129 ATAGCTTCGG
* *
57599139 CTATCGAT-TATGAAAAGGGATGGTGACGAC
1 CTATCAATATATGAAAAGGGATGGT-TCGAC
57599169 C-ATCGAA-ATATGAAAAGGGATGGATTC-AC
1 CTATC-AATATATGAAAAGGGATGG-TTCGAC
* *
57599198 CTATCAATATATGAAAAAGGATGGCTTCTA-
1 CTATCAATATATGAAAAGGGATGG-TTCGAC
57599228 CTATCAAT
1 CTATCAAT
57599236 CTCTAAAAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
29 8 0.14
30 47 0.82
31 2 0.04
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (30 bp):
CTATCAATATATGAAAAGGGATGGTTCGAC
Found at i:57599310 original size:60 final size:59
Alignment explanation
Indices: 57599123--57599317 Score: 189
Period size: 60 Copynumber: 3.3 Consensus size: 59
57599113 TCGGATACGG
*
57599123 AAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCGAAA-TATGA
1 AAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGACGACCATC-AAATTATGA
* * ** * * * * * *
57599182 AAAGGGATGGATTCACCTATCAATATATGAAAAAGGATGGCT-TCTACTATC-AATCTCTAA
1 AAAGGGATAGCTTCGGCTATCAAT-TATGAAAAGGGATGG-TGACGACCATCAAAT-TATGA
* * *
57599242 AAATGGATAGCTTTGGGTATCACATTATGAAAAGGGATGGTGACGACCATCAAATTATGA
1 AAAGGGATAGCTTCGGCTATCA-ATTATGAAAAGGGATGGTGACGACCATCAAATTATGA
*
57599302 AACGGGATAGCTTCGG
1 AAAGGGATAGCTTCGG
57599318 TTGTCGAACT
Statistics
Matches: 102, Mismatches: 27, Indels: 13
0.72 0.19 0.09
Matches are distributed among these distances:
58 2 0.02
59 20 0.20
60 74 0.73
61 6 0.06
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (59 bp):
AAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGACGACCATCAAATTATGA
Found at i:57606773 original size:29 final size:29
Alignment explanation
Indices: 57606724--57606911 Score: 130
Period size: 30 Copynumber: 6.3 Consensus size: 29
57606714 ATCGATGAAT
*
57606724 AAAAGGGAATAGGTTCAGCTATCGGA-TATG
1 AAAAGGG-ATAGCTTCAGCTATC-GATTATG
* *
57606754 GAAAGGGATAGCTTCGGCTATCGATTATG
1 AAAAGGGATAGCTTCAGCTATCGATTATG
* * * *
57606783 AAAAGGGAT-G-GTGATGACCATCGAACTATG
1 AAAAGGGATAGCTTCA-G-CTATCG-ATTATG
* * *
57606813 AAAAGGGATGGCTTTAGCTATCAATCTATG
1 AAAAGGGATAGCTTCAGCTATCGAT-TATG
* * *
57606843 AAAAGGGATGGCTTCAGCTATCAATCTCTG
1 AAAAGGGATAGCTTCAGCTATCGAT-TATG
* * * *
57606873 AAAATGGTTAGCTTCGGCTATCAATATATG
1 AAAAGGGATAGCTTCAGCTATCGAT-TATG
57606903 AAAAGGGAT
1 AAAAGGGAT
57606912 GGTGACGACC
Statistics
Matches: 127, Mismatches: 24, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
27 1 0.01
28 4 0.03
29 31 0.24
30 87 0.69
31 2 0.02
32 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (29 bp):
AAAAGGGATAGCTTCAGCTATCGATTATG
Found at i:57606842 original size:30 final size:30
Alignment explanation
Indices: 57606750--57606913 Score: 156
Period size: 30 Copynumber: 5.5 Consensus size: 30
57606740 AGCTATCGGA
* * * *
57606750 TATGGAAAGGGATAGCTTCGGCTATCGAT-
1 TATGAAAAGGGATGGCTTCAGCTATCAATC
* *
57606779 TATGAAAAGGGATGG--TGATGACCATCGAA-C
1 TATGAAAAGGGATGGCTTCA-G-CTATC-AATC
*
57606809 TATGAAAAGGGATGGCTTTAGCTATCAATC
1 TATGAAAAGGGATGGCTTCAGCTATCAATC
57606839 TATGAAAAGGGATGGCTTCAGCTATCAATC
1 TATGAAAAGGGATGGCTTCAGCTATCAATC
* * * * * *
57606869 TCTGAAAATGGTTAGCTTCGGCTATCAATA
1 TATGAAAAGGGATGGCTTCAGCTATCAATC
57606899 TATGAAAAGGGATGG
1 TATGAAAAGGGATGG
57606914 TGACGACCAT
Statistics
Matches: 109, Mismatches: 19, Indels: 13
0.77 0.13 0.09
Matches are distributed among these distances:
27 1 0.01
28 1 0.01
29 19 0.17
30 85 0.78
31 1 0.01
32 2 0.02
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (30 bp):
TATGAAAAGGGATGGCTTCAGCTATCAATC
Found at i:57606852 original size:60 final size:59
Alignment explanation
Indices: 57606750--57606941 Score: 219
Period size: 60 Copynumber: 3.2 Consensus size: 59
57606740 AGCTATCGGA
* *
57606750 TATGGAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGATGACCATCGAAC
1 TATGAAAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGATGACCATCGAAC
* ** * *
57606809 TATGAAAAGGGATGGCTTTAGCTATCAATCTATGAAAAGGGATGGCT--TCAGCTATC-AATC
1 TATGAAAAGGGATAGCTTCGGCTATCAAT-TATGAAAAGGGATGG-TGATGA-CCATCGAA-C
* * * *
57606869 TCTGAAAATGGTTAGCTTCGGCTATCAATATATGAAAAGGGATGGTGACGACCATCGAAC
1 TATGAAAAGGGATAGCTTCGGCTATCAAT-TATGAAAAGGGATGGTGATGACCATCGAAC
57606929 TATGAAAAGGGAT
1 TATGAAAAGGGAT
57606942 GGTGACGACC
Statistics
Matches: 106, Mismatches: 20, Indels: 13
0.76 0.14 0.09
Matches are distributed among these distances:
59 29 0.27
60 73 0.69
61 4 0.04
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.26
Consensus pattern (59 bp):
TATGAAAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGATGACCATCGAAC
Found at i:57606933 original size:30 final size:30
Alignment explanation
Indices: 57606899--57606971 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
57606889 GCTATCAATA
*
57606899 TATGAAAAGGGATGGTGACGACCATCGAAC
1 TATGAAAAGGGATGGTGACGACCATCAAAC
*
57606929 TATGAAAAGGGATGGTGACGACCATCAAAT
1 TATGAAAAGGGATGGTGACGACCATCAAAC
*
57606959 TATGAAACGGGAT
1 TATGAAAAGGGAT
57606972 AGCTTCGAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.38, C:0.14, G:0.29, T:0.19
Consensus pattern (30 bp):
TATGAAAAGGGATGGTGACGACCATCAAAC
Found at i:57606956 original size:60 final size:58
Alignment explanation
Indices: 57606770--57606971 Score: 155
Period size: 60 Copynumber: 3.4 Consensus size: 58
57606760 GATAGCTTCG
* *
57606770 GCTATCGAT-TATGAAAAGGGATGGTGATGACCATCGAACTATGAAAAGGGATGGCTTTA-
1 GCTATCAATATATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAGGGATGG---TAC
* * * * * * * *
57606829 GCTATCAATCTATGAAAAGGGATGGCT-TC-AGCTATC-AATCTCTGAAAATGGTTAGCTTC
1 GCTATCAATATATGAAAAGGGATGG-TGACGA-CCATCGAA-CTATGAAAAGGGAT-GGTAC
57606888 GGCTATCAATATATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAGGGATGGTGAC
1 -GCTATCAATATATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAGGGATGGT-AC
* *
57606948 GACCATCAA-ATTATGAAACGGGAT
1 G-CTATCAATA-TATGAAAAGGGAT
57606972 AGCTTCGAAT
Statistics
Matches: 111, Mismatches: 19, Indels: 25
0.72 0.12 0.16
Matches are distributed among these distances:
58 1 0.01
59 16 0.14
60 89 0.80
61 5 0.05
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.25
Consensus pattern (58 bp):
GCTATCAATATATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAGGGATGGTAC
Found at i:57606956 original size:120 final size:118
Alignment explanation
Indices: 57606762--57606977 Score: 319
Period size: 120 Copynumber: 1.8 Consensus size: 118
57606752 TGGAAAGGGA
* *
57606762 TAGCTTCGGCTATCGATTATGAAAAGGGATGGTGATGACCATCGAACTATGAAAAGGGATGGCTT
1 TAGCTTCGGCTATCAATTATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAGGGATGGC-T
* * *
57606827 TAGCTATC-AATCTATGAAAAGGGATGGCTTCAGCTATCAATCTCTGAAAATGGT
65 GAGCCATCAAAT-TATGAAAAGGGATAGCTTCAGCTATCAATCTCTGAAAATGGT
57606881 TAGCTTCGGCTATCAATATATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAGGGATGG-T
1 TAGCTTCGGCTATCAAT-TATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAGGGATGGCT
*
57606945 GACGACCATCAAATTATGAAACGGGATAGCTTC
65 GA-G-CCATCAAATTATGAAAAGGGATAGCTTC
57606978 GAATGTCGAA
Statistics
Matches: 87, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
118 2 0.02
119 17 0.20
120 65 0.75
121 3 0.03
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (118 bp):
TAGCTTCGGCTATCAATTATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAGGGATGGCTG
AGCCATCAAATTATGAAAAGGGATAGCTTCAGCTATCAATCTCTGAAAATGGT
Found at i:57607017 original size:30 final size:30
Alignment explanation
Indices: 57606959--57607017 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
57606949 ACCATCAAAT
* * *
57606959 TATGAAACGGGATAGCTTCGAATGTCGAAC
1 TATGAAAAGGGATAACTTCGAATATCGAAC
* *
57606989 TATGAAAAGGGATAACTTTGATTATCGAA
1 TATGAAAAGGGATAACTTCGAATATCGAA
57607018 TAACGAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (30 bp):
TATGAAAAGGGATAACTTCGAATATCGAAC
Found at i:57607026 original size:120 final size:119
Alignment explanation
Indices: 57606750--57607032 Score: 272
Period size: 120 Copynumber: 2.4 Consensus size: 119
57606740 AGCTATCGGA
* * * * * *
57606750 TATGGAAAGGGATAGCTTCGGCTATCGAT-TATGAAAAGGGATGGTGATGACCATCGAACTATGA
1 TATGAAAAGGGATAACTTCGACTATCAATATACGAAAAGGGATGGTGACGACCATCGAACTATGA
* * * *
57606814 AAAGGGATGGCTTTAGCTATCAATCTATGAAAAGGGATGGCTTCAGCTATCAATC
66 AAAGGGATGGC-TGAGCCATCAATCTATGAAAAGGGATAGCTTCAGATATCAATC
* * * * * *
57606869 TCTGAAAATGGTTAGCTTCGGCTATCAATATATGAAAAGGGATGGTGACGACCATCGAACTATGA
1 TATGAAAAGGGATAACTTCGACTATCAATATACGAAAAGGGATGGTGACGACCATCGAACTATGA
* *
57606934 AAAGGGATGG-TGACGACCATCAAAT-TATGAAACGGGATAGCTTC-GAATGTCGAA-C
66 AAAGGGATGGCTGA-G-CCATC-AATCTATGAAAAGGGATAGCTTCAG-ATATC-AATC
* * *
57606989 TATGAAAAGGGATAACTTTGATTATCGAATA-ACGAAAAAGGATG
1 TATGAAAAGGGATAACTTCGACTATC-AATATACGAAAAGGGATG
57607033 TGTCAACCAT
Statistics
Matches: 136, Mismatches: 21, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
118 2 0.01
119 26 0.19
120 99 0.73
121 9 0.07
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.25
Consensus pattern (119 bp):
TATGAAAAGGGATAACTTCGACTATCAATATACGAAAAGGGATGGTGACGACCATCGAACTATGA
AAAGGGATGGCTGAGCCATCAATCTATGAAAAGGGATAGCTTCAGATATCAATC
Found at i:57609361 original size:3 final size:3
Alignment explanation
Indices: 57609347--57609378 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
57609337 AATCTTTTAA
*
57609347 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
57609379 AAGATCGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:57621596 original size:20 final size:20
Alignment explanation
Indices: 57621571--57621609 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
57621561 GTGTGACCCC
57621571 TGCAGTCCAATTTTTCTATT
1 TGCAGTCCAATTTTTCTATT
57621591 TGCAGTCCAATTTTTCTAT
1 TGCAGTCCAATTTTTCTAT
57621610 CTTTTTCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.49
Consensus pattern (20 bp):
TGCAGTCCAATTTTTCTATT
Found at i:57625770 original size:27 final size:27
Alignment explanation
Indices: 57625732--57625785 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
57625722 ATTACATCCT
* *
57625732 TAGACTGATGGTCAGTCCGAGTGGCTA
1 TAGACCGATGGTCAGTCCGAGCGGCTA
57625759 TAGACCGATGGTCAGTCCGAGCGGCTA
1 TAGACCGATGGTCAGTCCGAGCGGCTA
57625786 ATTCAGATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.22
Consensus pattern (27 bp):
TAGACCGATGGTCAGTCCGAGCGGCTA
Found at i:57629686 original size:19 final size:20
Alignment explanation
Indices: 57629650--57629692 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
57629640 GTAAGAAAAG
*
57629650 ATTATTTTTAAATGTTTTTT
1 ATTATTTTTAAATGTTTTTA
* *
57629670 ATTA-TTTTATATTTTTTTA
1 ATTATTTTTAAATGTTTTTA
57629689 ATTA
1 ATTA
57629693 AGAAATTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (20 bp):
ATTATTTTTAAATGTTTTTA
Found at i:57639650 original size:27 final size:27
Alignment explanation
Indices: 57639612--57639682 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
57639602 AAGCTAGAAA
*
57639612 ATGGAAGTCTTTGTAGCAACCTATGAG
1 ATGGAAGCCTTTGTAGCAACCTATGAG
* *
57639639 ATGGAAGCCTTTGTGGCAATCTATGAG
1 ATGGAAGCCTTTGTAGCAACCTATGAG
*
57639666 ATAGAAGCCTTTGTAGC
1 ATGGAAGCCTTTGTAGC
57639683 GATCTAAGGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
ATGGAAGCCTTTGTAGCAACCTATGAG
Found at i:57644436 original size:15 final size:14
Alignment explanation
Indices: 57644417--57644459 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
57644407 AATTTAGTAA
*
57644417 TTTTTTATTTTATT
1 TTTTTTATTTTAAT
*
57644431 TGTTTTTAATTTAAT
1 T-TTTTTATTTTAAT
*
57644446 TTTTATATTTTAAT
1 TTTTTTATTTTAAT
57644460 ATATTCATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (14 bp):
TTTTTTATTTTAAT
Found at i:57654340 original size:26 final size:26
Alignment explanation
Indices: 57654285--57654346 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 26
57654275 TACATAATGG
* * *
57654285 AATAAAATAATGTATATAAAGAGTTA
1 AATAAAATAATATATATAAAGAATAA
*
57654311 AATAAATTAATATATATAAA-AATAA
1 AATAAAATAATATATATAAAGAATAA
57654336 TAATAATAATA
1 -AATAA-AATA
57654347 GTATTAATAG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
25 3 0.10
26 23 0.79
27 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (26 bp):
AATAAAATAATATATATAAAGAATAA
Found at i:57656685 original size:29 final size:28
Alignment explanation
Indices: 57656649--57656726 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
57656639 TCATGAGATT
57656649 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
57656679 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
57656706 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
57656727 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:57656944 original size:174 final size:174
Alignment explanation
Indices: 57656679--57664314 Score: 15092
Period size: 174 Copynumber: 43.9 Consensus size: 174
57656669 AAATTGTACA
*
57656679 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57656744 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57656809 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
57656853 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
57656918 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57656983 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
57657027 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57657092 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57657157 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57657201 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57657266 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57657331 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57657375 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57657440 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57657505 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57657549 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57657614 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57657679 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57657723 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57657788 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57657853 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57657897 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57657962 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57658027 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
57658071 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57658136 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57658201 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57658245 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57658310 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57658375 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57658419 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57658484 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57658549 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57658593 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57658658 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57658723 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57658767 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57658832 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57658897 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57658941 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57659006 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57659071 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57659115 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57659180 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57659245 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
57659289 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57659354 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57659419 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57659463 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57659528 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57659593 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
57659637 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57659702 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57659767 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57659811 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57659876 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57659941 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
57659985 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57660050 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57660115 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57660159 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57660224 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57660289 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
57660333 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57660398 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57660463 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57660507 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57660572 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57660637 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57660681 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57660746 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57660811 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
57660855 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57660920 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57660985 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57661029 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57661094 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57661159 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
57661203 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57661268 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57661333 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57661377 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57661442 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57661507 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
57661551 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57661616 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57661681 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57661725 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57661790 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57661855 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57661899 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57661964 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57662029 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57662073 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57662138 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57662203 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57662247 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57662312 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57662377 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57662421 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57662486 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57662551 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57662595 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57662660 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57662725 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
57662769 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57662834 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57662899 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57662943 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57663008 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57663073 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57663117 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57663182 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57663247 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57663291 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57663356 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57663421 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
57663465 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57663530 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57663595 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57663639 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57663704 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57663769 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
57663813 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57663878 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57663943 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
57663987 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
57664052 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57664117 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
57664161 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
57664226 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
57664291 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
57664315 ACCTTGAGTT
Statistics
Matches: 7430, Mismatches: 32, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
174 7430 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:57667117 original size:89 final size:88
Alignment explanation
Indices: 57667021--57667188 Score: 246
Period size: 89 Copynumber: 1.9 Consensus size: 88
57667011 CTCCAAATTC
*
57667021 TTTTTTTTCCTCGAGAAATGATGTAATAGTGACATCATATAAAGTCACTATTATTAATTATTATT
1 TTTTTTTTCCTCGAGAAATGATGTAATAGTGACAACATATAAAGTCACTATTATTAATTATTATT
* *
57667086 GTGGCCATACGAATTGCCTTCAAG
66 GCGACCATAC-AATTGCCTTCAAG
* * * * * *
57667110 TTTTTTTTTCTTGAGAACTGATGTAATAGTGATAACATATCATGTCACTATTATTAATTATTATT
1 TTTTTTTTCCTCGAGAAATGATGTAATAGTGACAACATATAAAGTCACTATTATTAATTATTATT
57667175 GCGACCATACAATT
66 GCGACCATACAATT
57667189 TTTTTCACTA
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
88 4 0.06
89 66 0.94
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.42
Consensus pattern (88 bp):
TTTTTTTTCCTCGAGAAATGATGTAATAGTGACAACATATAAAGTCACTATTATTAATTATTATT
GCGACCATACAATTGCCTTCAAG
Found at i:57670143 original size:24 final size:24
Alignment explanation
Indices: 57670106--57670153 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
57670096 TTTTACTATC
*
57670106 ATTTAACATTAATATAAATTTAAT
1 ATTTAACATAAATATAAATTTAAT
* * *
57670130 ATTTAATATAAATATGATTTTAAT
1 ATTTAACATAAATATAAATTTAAT
57670154 TGTTTTTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (24 bp):
ATTTAACATAAATATAAATTTAAT
Found at i:57676287 original size:30 final size:30
Alignment explanation
Indices: 57676253--57676309 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
57676243 TCACATGGTC
*
57676253 GTGTAACATTCGAACTAGGGACACATGACT
1 GTGTAACATTCGAACTAAGGACACATGACT
*
57676283 GTGTAACCTTCGAACTAAGGACACATG
1 GTGTAACATTCGAACTAAGGACACATG
57676310 GTCGTGTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (30 bp):
GTGTAACATTCGAACTAAGGACACATGACT
Found at i:57679184 original size:18 final size:19
Alignment explanation
Indices: 57679158--57679197 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
57679148 TCTCCATTCC
57679158 ACATCCTTA-ATGTATATA
1 ACATCCTTATATGTATATA
*
57679176 ACATGCTTATATGTATATA
1 ACATCCTTATATGTATATA
57679195 ACA
1 ACA
57679198 AGCTGTCCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (19 bp):
ACATCCTTATATGTATATA
Found at i:57680260 original size:8 final size:8
Alignment explanation
Indices: 57680247--57680271 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
57680237 TATACTAAAC
57680247 AATAAAAT
1 AATAAAAT
57680255 AATAAAAT
1 AATAAAAT
57680263 AATAAAAT
1 AATAAAAT
57680271 A
1 A
57680272 TTATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:57682714 original size:51 final size:51
Alignment explanation
Indices: 57682638--57682828 Score: 246
Period size: 51 Copynumber: 3.8 Consensus size: 51
57682628 CCGGTTCACA
* * *
57682638 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGGTACACG
* * * *
57682689 TAGTAGCCTGCTCATAGTACTACACACGTGATCGA--AGCTATCTGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTATCTGGTACACG
* *
57682740 TAGTAGCCTGCATATAGTACTACACATGTGACCTATCA-T-TCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCTGGTACACG
57682790 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
57682829 TTCACTTTTA
Statistics
Matches: 119, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
49 4 0.03
50 43 0.36
51 69 0.58
52 2 0.02
53 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGGTACACG
Found at i:57682818 original size:101 final size:102
Alignment explanation
Indices: 57682636--57682820 Score: 311
Period size: 101 Copynumber: 1.8 Consensus size: 102
57682626 TACCGGTTCA
*
57682636 CATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTGCT
1 CATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTGCA
57682701 CATAGTACTACACACGTGATCGAAGCTATCTGGTACG
66 CATAGTACTACACACGTGATCGAAGCTATCTGGTACG
* * *
57682738 CATAGTAGCCTGCATATAGTACTACACATGTGACCTATCA-T-TCTGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTATCCGATACACGTAGTAGCCTGC
57682801 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
57682821 CCATCACTTT
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
101 39 0.50
102 35 0.45
103 4 0.05
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAGCTATCTGGTACG
Found at i:57684534 original size:139 final size:139
Alignment explanation
Indices: 57684284--57684556 Score: 501
Period size: 139 Copynumber: 2.0 Consensus size: 139
57684274 ATTTAATTTA
57684284 ATATTTTATTCATCCTATAATTAGATTTCCACAATTTATGGTGAATTTTCAAAATTAACCTACTG
1 ATATTTTATTCATCCTATAATTAGATTTCCACAATTTATGGTGAATTTTCAAAATTAACCTACTG
57684349 CTACTATCCAAAACTGTTTTAGTGCAAAATATTGATTACTAAGTTTATAACACTCTTATTTTCCT
66 CTACTATCCAAAACTGTTTTAGTGCAAAATATTGATTACTAAGTTTATAACACTCTTATTTTCCT
57684414 TCTCGATAC
131 TCTCGATAC
* * * *
57684423 ATATTTTATTCATCCTCTAATTATATTTCCACAATTTATGGTGATTTTTCAAAGTTAACCTACTG
1 ATATTTTATTCATCCTATAATTAGATTTCCACAATTTATGGTGAATTTTCAAAATTAACCTACTG
*
57684488 CTACTGTCCAAAACTGTTTTAGTGCAAAATATTGATTACTAAGTTTATAACACTCTTATTTTCCT
66 CTACTATCCAAAACTGTTTTAGTGCAAAATATTGATTACTAAGTTTATAACACTCTTATTTTCCT
57684553 TCTC
131 TCTC
57684557 TACACTATTT
Statistics
Matches: 129, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
139 129 1.00
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.43
Consensus pattern (139 bp):
ATATTTTATTCATCCTATAATTAGATTTCCACAATTTATGGTGAATTTTCAAAATTAACCTACTG
CTACTATCCAAAACTGTTTTAGTGCAAAATATTGATTACTAAGTTTATAACACTCTTATTTTCCT
TCTCGATAC
Found at i:57685015 original size:8 final size:8
Alignment explanation
Indices: 57685002--57685026 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
57684992 TATACTAAAC
57685002 AATAAAAT
1 AATAAAAT
57685010 AATAAAAT
1 AATAAAAT
57685018 AATAAAAT
1 AATAAAAT
57685026 A
1 A
57685027 TTATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:57690071 original size:18 final size:18
Alignment explanation
Indices: 57690048--57690085 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
57690038 GCATAGCTTT
*
57690048 CCAACAAAGCTTTTCAAA
1 CCAACAAAGCTTTCCAAA
*
57690066 CCAACATAGCTTTCCAAA
1 CCAACAAAGCTTTCCAAA
57690084 CC
1 CC
57690086 TTACACATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.34, G:0.05, T:0.21
Consensus pattern (18 bp):
CCAACAAAGCTTTCCAAA
Found at i:57694450 original size:13 final size:13
Alignment explanation
Indices: 57694434--57694458 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57694424 TAAAATGTGC
57694434 AAATAAAACAAGT
1 AAATAAAACAAGT
57694447 AAATAAAACAAG
1 AAATAAAACAAG
57694459 AATGTTACGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.08, T:0.12
Consensus pattern (13 bp):
AAATAAAACAAGT
Found at i:57701137 original size:8 final size:8
Alignment explanation
Indices: 57701126--57701150 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
57701116 AATTTTAAAC
57701126 ATTTAACA
1 ATTTAACA
57701134 ATTTAACA
1 ATTTAACA
57701142 ATTTAACA
1 ATTTAACA
57701150 A
1 A
57701151 ATTGATCCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (8 bp):
ATTTAACA
Found at i:57702548 original size:6 final size:6
Alignment explanation
Indices: 57702537--57702568 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
57702527 TCAATCCTGG
57702537 ATGAAA ATGAAA ATGAAA ATGAAA ATGAAA AT
1 ATGAAA ATGAAA ATGAAA ATGAAA ATGAAA AT
57702569 AAAGACTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.16, T:0.19
Consensus pattern (6 bp):
ATGAAA
Found at i:57706439 original size:50 final size:50
Alignment explanation
Indices: 57706379--57706665 Score: 348
Period size: 50 Copynumber: 5.8 Consensus size: 50
57706369 TCGCATATCG
* * * * *
57706379 GTGCCGATGCCATGTCCCAAACATGGTCTTACAATAACTCTCCTCTGTCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCGGTCC
* * *
57706429 GTGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACTACTCGGTCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCGGTCC
* * *
57706479 GTGCCGATGCCATTTCCCAGACATGGTCTTACACTGGCACTCATC--T-C
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCGGTCC
* * * * *
57706526 GAGCCGATGTCATGTCCCAAACATGGTCTTACACT-GACTCTCCTCTGTCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CACTCCTCGGTCC
* * *
57706576 GTGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTTCTCGGTCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCGGTCC
* *
57706626 GTGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCAC
57706666 ACTCACTACC
Statistics
Matches: 201, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
46 1 0.00
47 37 0.18
48 1 0.00
49 1 0.00
50 160 0.80
51 1 0.00
ACGTcount: A:0.20, C:0.32, G:0.20, T:0.28
Consensus pattern (50 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCGGTCC
Found at i:57706584 original size:97 final size:100
Alignment explanation
Indices: 57706379--57706669 Score: 335
Period size: 97 Copynumber: 3.0 Consensus size: 100
57706369 TCGCATATCG
* * * * * * *
57706379 GTGCCGATGCCATGTCCCAAACATGGTCTTACAATAACTCTCCTCTGTCCGTGCCGATGCCATGT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTTCTC-GTCTGAGCCGATGCCATGT
* *
57706444 CCTAGACATGGTCTTACACT-AGCACTACTCGGTCT
65 CCCAGACATGGTCTTACACTGAGCACTACTCGGTCC
* * *
57706479 GTGCCGATGCCATTTCCCAGACATGGTCTTACACTGGCAC-TCATC-TC-GAGCCGATGTCATGT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTTC-TCGTCTGAGCCGATGCCATGT
* * * *
57706541 CCCAAACATGGTCTTACACTGA-CTCTCCTCTGTCC
65 CCCAGACATGGTCTTACACTGAGCACTACTCGGTCC
* * *
57706576 GTGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTTCTCGGTCTGTGCCAATGCCATGT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTTCTC-GTCTGAGCCGATGCCATGT
57706641 CCCAGACATGGTCTTACACTG-GCAC-ACTC
65 CCCAGACATGGTCTTACACTGAGCACTACTC
57706670 ACTACCATGG
Statistics
Matches: 160, Mismatches: 24, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
97 79 0.49
98 5 0.03
99 6 0.04
100 70 0.44
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.27
Consensus pattern (100 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTTCTCGTCTGAGCCGATGCCATGTC
CCAGACATGGTCTTACACTGAGCACTACTCGGTCC
Found at i:57706648 original size:147 final size:148
Alignment explanation
Indices: 57706333--57706665 Score: 508
Period size: 147 Copynumber: 2.3 Consensus size: 148
57706323 CTGGTAGGAC
* * * *
57706333 GCCAATGCCATATCCTAGATATGGTCTTACA-TGGGATCGCATATCGGTGCCGATGCCATGTCCC
1 GCCAATGCCATATCCCAGACATGGTCTTACACTGGCA-CGCATATCGGAGCCGATGCCATGTCCC
*
57706397 AAACATGGTCTTACAATAACTCTCCTCTGTCCGTGCCGATGCCATGTCCTAGACATGGTCTTACA
65 AAACATGGTCTTACAATAACTCTCCTCTGTCCGTGCCGATGCCATGTCCCAGACATGGTCTTACA
57706462 CTAGCACTACTCGGTCTGT
130 CTAGCACTACTCGGTCTGT
* * * * *
57706481 GCCGATGCCATTTCCCAGACATGGTCTTACACTGGCACTCATCTC-GAGCCGATGTCATGTCCCA
1 GCCAATGCCATATCCCAGACATGGTCTTACACTGGCACGCATATCGGAGCCGATGCCATGTCCCA
* * *
57706545 AACATGGTCTTACACTGACTCTCCTCTGTCCGTGTCGATGCCATGTCCCAGACATGGTCTTACAC
66 AACATGGTCTTACAATAACTCTCCTCTGTCCGTGCCGATGCCATGTCCCAGACATGGTCTTACAC
*
57706610 TAGCACTTCTCGGTCTGT
131 TAGCACTACTCGGTCTGT
*
57706628 GCCAATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 GCCAATGCCATATCCCAGACATGGTCTTACACTGGCAC
57706666 ACTCACTACC
Statistics
Matches: 168, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
147 131 0.78
148 33 0.20
149 4 0.02
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (148 bp):
GCCAATGCCATATCCCAGACATGGTCTTACACTGGCACGCATATCGGAGCCGATGCCATGTCCCA
AACATGGTCTTACAATAACTCTCCTCTGTCCGTGCCGATGCCATGTCCCAGACATGGTCTTACAC
TAGCACTACTCGGTCTGT
Found at i:57709316 original size:18 final size:18
Alignment explanation
Indices: 57709288--57709329 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
57709278 CTTTTTTAAG
57709288 AGTGC-TTTTGTCCCAAA
1 AGTGCTTTTTGTCCCAAA
*
57709305 AGTGCTTTTTGTCCTAAA
1 AGTGCTTTTTGTCCCAAA
57709323 AGTGCTT
1 AGTGCTT
57709330 CTTAGAAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (18 bp):
AGTGCTTTTTGTCCCAAA
Found at i:57711127 original size:21 final size:22
Alignment explanation
Indices: 57711080--57711127 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
57711070 AAGTTTCAGC
57711080 TCAAAATTATATAAAAAGTAAT
1 TCAAAATTATATAAAAAGTAAT
* * * *
57711102 CCAAAATTTTAT-ATAAGTTAT
1 TCAAAATTATATAAAAAGTAAT
57711123 TCAAA
1 TCAAA
57711128 CTCTTTTATA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.35
Consensus pattern (22 bp):
TCAAAATTATATAAAAAGTAAT
Found at i:57717369 original size:3 final size:3
Alignment explanation
Indices: 57717361--57717403 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
57717351 AACGTATGTG
57717361 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
57717404 ATAAAAAGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:57735773 original size:20 final size:21
Alignment explanation
Indices: 57735748--57735797 Score: 86
Period size: 20 Copynumber: 2.5 Consensus size: 21
57735738 TATAGAATAC
57735748 GCCACAAAGGT-TAACAGAAT
1 GCCACAAAGGTCTAACAGAAT
57735768 GCCAC-AAGGTCTAACAGAAT
1 GCCACAAAGGTCTAACAGAAT
57735788 GCCACAAAGG
1 GCCACAAAGG
57735798 CCAAACCAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.18
20 19 0.68
21 4 0.14
ACGTcount: A:0.42, C:0.24, G:0.22, T:0.12
Consensus pattern (21 bp):
GCCACAAAGGTCTAACAGAAT
Found at i:57735810 original size:22 final size:21
Alignment explanation
Indices: 57735760--57735859 Score: 69
Period size: 22 Copynumber: 4.6 Consensus size: 21
57735750 CACAAAGGTT
* *
57735760 AACAGAATGCCAC-AAGGTCT
1 AACAGAATGCCACAAAGGCCA
57735780 AACAGAATGCCACAAAGGCCA
1 AACAGAATGCCACAAAGGCCA
* * *
57735801 AACCAGAATGTCATAAACGCCA
1 AA-CAGAATGCCACAAAGGCCA
* *
57735823 AATTTAGAATGCGCCACAAAGG-CT
1 AA--CAGAAT--GCCACAAAGGCCA
*
57735847 AACAAAATGCCAC
1 AACAGAATGCCAC
57735860 CCAAGCACCT
Statistics
Matches: 62, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
20 18 0.29
21 7 0.11
22 22 0.35
23 5 0.08
24 3 0.05
25 7 0.11
ACGTcount: A:0.44, C:0.26, G:0.17, T:0.13
Consensus pattern (21 bp):
AACAGAATGCCACAAAGGCCA
Found at i:57745357 original size:15 final size:16
Alignment explanation
Indices: 57745333--57745376 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
57745323 GCATAATGGT
*
57745333 CACATGTCACAA-AAA
1 CACATATCACAATAAA
*
57745348 CACATATCACAATATA
1 CACATATCACAATAAA
57745364 CACATATTCACAA
1 CACATA-TCACAA
57745377 GTTAAGATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 11 0.44
16 8 0.32
17 6 0.24
ACGTcount: A:0.50, C:0.27, G:0.02, T:0.20
Consensus pattern (16 bp):
CACATATCACAATAAA
Found at i:57746252 original size:190 final size:190
Alignment explanation
Indices: 57745928--57746309 Score: 629
Period size: 190 Copynumber: 2.0 Consensus size: 190
57745918 GGCTACTACT
* * *
57745928 AAATTCCCAAATAACGCATTGAAGCATGTCCACAAGTAATTATTCCATACAGCCACTAATTATGC
1 AAATTCCCAAATAACGCATTGAAGCATGTCCACAAGCAATTATTCCATACAGCCACCAATTACGC
* *
57745993 TTTTGCCTAAAAGCTGAAAGCTCAAACTAGCTTTTCCTTGCCTTTATCTCTACTCATAAAAGGTT
66 TTTTGCCTAAAAGCCGAAAGCTCAAACTAGCTTTTCCTTGCCTTTATCTCTACTCATAAAAGATT
* *
57746058 CTATCGAATCTGGAACTTCAACACAATAAATTCACACAACAATACATCCAAAAATTATCC
131 CTATCGAATCTAGAACTTCAACACAATAAATTCACACAACAATACATCCAAAAATTAGCC
* *
57746118 AAATTCCCAAATAATGCATTGAAGCATGTCCACAAGCAATTATTCCATACAGTCACCAATTACGC
1 AAATTCCCAAATAACGCATTGAAGCATGTCCACAAGCAATTATTCCATACAGCCACCAATTACGC
* * * *
57746183 TTTTGCTTAAAAGCCGAATGCTCAAACTAGCTTTTCCTTGCCTTTATCTCTACTCGTAGAAGATT
66 TTTTGCCTAAAAGCCGAAAGCTCAAACTAGCTTTTCCTTGCCTTTATCTCTACTCATAAAAGATT
* *
57746248 CTATCGAATCTAGAACTTCAACATAATAAATTCGCACAACAATACATCCAAAAATTAGCC
131 CTATCGAATCTAGAACTTCAACACAATAAATTCACACAACAATACATCCAAAAATTAGCC
57746308 AA
1 AA
57746310 GGATTCATTA
Statistics
Matches: 177, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
190 177 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.29
Consensus pattern (190 bp):
AAATTCCCAAATAACGCATTGAAGCATGTCCACAAGCAATTATTCCATACAGCCACCAATTACGC
TTTTGCCTAAAAGCCGAAAGCTCAAACTAGCTTTTCCTTGCCTTTATCTCTACTCATAAAAGATT
CTATCGAATCTAGAACTTCAACACAATAAATTCACACAACAATACATCCAAAAATTAGCC
Found at i:57746735 original size:21 final size:22
Alignment explanation
Indices: 57746700--57746750 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
57746690 ATTTTTATTT
57746700 AAAACATGTGATTTAATGG-CTA
1 AAAACATGTGATTTAA-GGACTA
*
57746722 AAAACATG-GTTTTAAGGACTA
1 AAAACATGTGATTTAAGGACTA
57746743 AATAACAT
1 AA-AACAT
57746751 CTAAAACTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 2 0.08
21 11 0.42
22 13 0.50
ACGTcount: A:0.45, C:0.10, G:0.16, T:0.29
Consensus pattern (22 bp):
AAAACATGTGATTTAAGGACTA
Found at i:57765675 original size:30 final size:30
Alignment explanation
Indices: 57765641--57765703 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
57765631 ACTTAACAAG
57765641 CAAATGCCTCTAAAATAATAACAAAAATAA
1 CAAATGCCTCTAAAATAATAACAAAAATAA
* * *
57765671 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAAATAA
57765701 CAA
1 CAA
57765704 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.59, C:0.14, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAAATAA
Found at i:57771463 original size:59 final size:58
Alignment explanation
Indices: 57771365--57771537 Score: 195
Period size: 59 Copynumber: 2.9 Consensus size: 58
57771355 AAACTTAAGT
** * * * **
57771365 TTCACTGATTTATGATCATAAACGTTTACTTTGCTTACAATATTTTTAGAATCTTGCGG
1 TTCACTGATTTACAATCA-CAACGTTTACTTCGCTTACAAGATTTTTAGAATCTTGCAA
* *
57771424 TTCACTGATTTACAATCACAATCGTTTACTTCGCATACAAGATTTTCAGAATCTTGCAA
1 TTCACTGATTTACAATCACAA-CGTTTACTTCGCTTACAAGATTTTTAGAATCTTGCAA
** *
57771483 TTCGTTGATTTACAATCACAACTGTTTAC-TCTGGTTACAAGATTTTTAGAATCTT
1 TTCACTGATTTACAATCACAAC-GTTTACTTC-GCTTACAAGATTTTTAGAATCTT
57771538 ATAGTTTGCT
Statistics
Matches: 97, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
58 5 0.05
59 92 0.95
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (58 bp):
TTCACTGATTTACAATCACAACGTTTACTTCGCTTACAAGATTTTTAGAATCTTGCAA
Found at i:57771551 original size:59 final size:58
Alignment explanation
Indices: 57771388--57771568 Score: 202
Period size: 59 Copynumber: 3.1 Consensus size: 58
57771378 GATCATAAAC
* * *
57771388 GTTTACTTTGCTTACAATATTTTTAGAATCTTGCGGTTCACTGATTTACAATCACAA-T
1 GTTTAC-TTGCTTACAAGATTTTTAGAATCTTGCAGTTCGCTGATTTACAATCACAACT
* * * *
57771446 CGTTTACTTCGCATACAAGATTTTCAGAATCTTGCAATTCGTTGATTTACAATCACAACT
1 -GTTTACTT-GCTTACAAGATTTTTAGAATCTTGCAGTTCGCTGATTTACAATCACAACT
* ** * * *
57771506 GTTTACTCTGGTTACAAGATTTTTAGAATCTTATAGTTTGCTGATTTAAAATCACAACC
1 GTTTACT-TGCTTACAAGATTTTTAGAATCTTGCAGTTCGCTGATTTACAATCACAACT
57771565 GTTT
1 GTTT
57771569 CCCACACTTA
Statistics
Matches: 102, Mismatches: 17, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
58 2 0.02
59 98 0.96
60 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.41
Consensus pattern (58 bp):
GTTTACTTGCTTACAAGATTTTTAGAATCTTGCAGTTCGCTGATTTACAATCACAACT
Found at i:57772109 original size:14 final size:13
Alignment explanation
Indices: 57772074--57772112 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
57772064 GTATTTTCAT
57772074 TTTTATTTTATTA
1 TTTTATTTTATTA
*
57772087 TTCCTATTTTATTA
1 TT-TTATTTTATTA
*
57772101 TTTTAATTTATT
1 TTTTATTTTATT
57772113 CTTGTCGAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTATTTTATTA
Found at i:57776817 original size:22 final size:22
Alignment explanation
Indices: 57776792--57776840 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
57776782 CTACCTTCAA
* *
57776792 TGTCATGACATAGACAATAGGG
1 TGTCATGACATAAACAATAAGG
* *
57776814 TGTCATTACATAAACACTAAGG
1 TGTCATGACATAAACAATAAGG
57776836 TGTCA
1 TGTCA
57776841 CAACACCAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (22 bp):
TGTCATGACATAAACAATAAGG
Found at i:57788418 original size:25 final size:26
Alignment explanation
Indices: 57788384--57788444 Score: 97
Period size: 25 Copynumber: 2.4 Consensus size: 26
57788374 ACATATTTTC
*
57788384 TCAAAATTTTACCAGGGG-AAAATCG
1 TCAAAATTTTACAAGGGGTAAAATCG
57788409 TCAAAATTTTACAAGGGGTAAAATCG
1 TCAAAATTTTACAAGGGGTAAAATCG
*
57788435 TTAAAATTTT
1 TCAAAATTTT
57788445 GTTGGGGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
25 17 0.52
26 16 0.48
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.31
Consensus pattern (26 bp):
TCAAAATTTTACAAGGGGTAAAATCG
Found at i:57789126 original size:9 final size:10
Alignment explanation
Indices: 57789104--57789136 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
57789094 ATTGTGTATT
57789104 TGAATAGAAA
1 TGAATAGAAA
57789114 TGAATAG-AA
1 TGAATAGAAA
57789123 TGAATAAGAAA
1 TGAAT-AGAAA
57789134 TGA
1 TGA
57789137 GAAATGAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.33
10 9 0.43
11 5 0.24
ACGTcount: A:0.58, C:0.00, G:0.21, T:0.21
Consensus pattern (10 bp):
TGAATAGAAA
Found at i:57789242 original size:18 final size:18
Alignment explanation
Indices: 57789219--57789255 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
57789209 TAGGTTTCCA
*
57789219 AAAATTGAAATGGAAATG
1 AAAATTAAAATGGAAATG
57789237 AAAATTAAAATGGAAATG
1 AAAATTAAAATGGAAATG
57789255 A
1 A
57789256 TCCATTTGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.19, T:0.22
Consensus pattern (18 bp):
AAAATTAAAATGGAAATG
Done.