Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 23 of 187
Found at i:6650431 original size:17 final size:18
Alignment explanation
Indices: 6650406--6650439 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6650396 GTAAACTTAG
*
6650406 TAATGGTGTAT-AATGTA
1 TAATAGTGTATGAATGTA
6650423 TAATAGTGTATGAATGT
1 TAATAGTGTATGAATGT
6650440 TTGGTAAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (18 bp):
TAATAGTGTATGAATGTA
Found at i:6651259 original size:23 final size:23
Alignment explanation
Indices: 6651230--6651277 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
6651220 TTCTTGATTA
* *
6651230 ATGGCTCTCCCGAGCTTCCCAAT
1 ATGGCTCGCCCGAACTTCCCAAT
**
6651253 ATGGCTCGCTTGAACTTCCCAAT
1 ATGGCTCGCCCGAACTTCCCAAT
6651276 AT
1 AT
6651278 ATAGCTATCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.21, C:0.33, G:0.17, T:0.29
Consensus pattern (23 bp):
ATGGCTCGCCCGAACTTCCCAAT
Found at i:6651416 original size:25 final size:25
Alignment explanation
Indices: 6651388--6651457 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
6651378 AGTATGGATA
6651388 AGCTTCTAGTTACATGGCTCACATG
1 AGCTTCTAGTTACATGGCTCACATG
6651413 AGCTTCCTA-TTACATGGCTCACATG
1 AGCTT-CTAGTTACATGGCTCACATG
* ** *
6651438 ATCTTCCCGTTATATGGCTC
1 AGCTTCTAGTTACATGGCTC
6651458 GAGAGGGGGC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 1 0.03
25 35 0.90
26 3 0.08
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.34
Consensus pattern (25 bp):
AGCTTCTAGTTACATGGCTCACATG
Found at i:6659200 original size:25 final size:25
Alignment explanation
Indices: 6659110--6659212 Score: 65
Period size: 25 Copynumber: 4.2 Consensus size: 25
6659100 GACCCTTCGT
* *
6659110 GAGCTTCTTGATTAATGGCTCTCCG
1 GAGCTTCTCGATTAATGGCTATCCG
**
6659135 GAGCTTCTCGATATAA---CTCA-CTT
1 GAGCTTCTCGAT-TAATGGCT-ATCCG
*
6659158 GAACTT-TCTGA-TATATGGCTATCCG
1 GAGCTTCTC-GATTA-ATGGCTATCCG
* *
6659183 GAGCTTCTCGATTAATGGCTCTTCG
1 GAGCTTCTCGATTAATGGCTATCCG
6659208 GAGCT
1 GAGCT
6659213 ACCCGTTATT
Statistics
Matches: 58, Mismatches: 10, Indels: 20
0.66 0.11 0.23
Matches are distributed among these distances:
21 2 0.03
22 3 0.05
23 10 0.17
24 1 0.02
25 35 0.60
26 7 0.12
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.35
Consensus pattern (25 bp):
GAGCTTCTCGATTAATGGCTATCCG
Found at i:6659260 original size:25 final size:25
Alignment explanation
Indices: 6659229--6659276 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
6659219 TATTAGCTCG
*
6659229 CATGAGCTTCCCATTATATGGCTTA
1 CATGAGCTTCCCATCATATGGCTTA
*
6659254 CATGAGCTTCTCATCATATGGCT
1 CATGAGCTTCCCATCATATGGCT
6659277 CAAGAGAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (25 bp):
CATGAGCTTCCCATCATATGGCTTA
Found at i:6660796 original size:130 final size:130
Alignment explanation
Indices: 6660588--6660837 Score: 346
Period size: 130 Copynumber: 1.9 Consensus size: 130
6660578 ATGTAGCGTA
* *
6660588 ATTCACAATAGTGGTATTCATAACCTAAAACACGGCTAAATGATATTCTCCCATTAGCATTGCAT
1 ATTCACAATAGTAGAATTCATAACCTAAAACACGGCTAAATGATATTCTCCCATTAGCATTGCAT
* * * * *
6660653 GGTTGATGAAAAGTAAATGTGGTCATGGGTCGTTCTTCTTTATGATGAATGACTTTTGTATTGAC
66 GGTTAAGGAAAAGTAAATGTGGTAACGGGTCGTTCGTCTTTATGATGAATGACTTTTGTATTGAC
* *
6660718 ATTCACAATAGTAGAATTCATAGCCTAAAATACAGG-TAAATGATA-TC-CCC-TTATTGCCATT
1 ATTCACAATAGTAGAATTCATAACCTAAAACAC-GGCTAAATGATATTCTCCCATTA--G-CATT
*
6660779 GCATGGTTAAGGAAAAGTAAATGTGGTAACGGGTCGTTCGTCTTTGTGATGAATGACTT
62 GCATGGTTAAGGAAAAGTAAATGTGGTAACGGGTCGTTCGTCTTTATGATGAATGACTT
6660838 GATTACTATT
Statistics
Matches: 106, Mismatches: 10, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
127 3 0.03
128 3 0.03
129 3 0.03
130 95 0.90
131 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (130 bp):
ATTCACAATAGTAGAATTCATAACCTAAAACACGGCTAAATGATATTCTCCCATTAGCATTGCAT
GGTTAAGGAAAAGTAAATGTGGTAACGGGTCGTTCGTCTTTATGATGAATGACTTTTGTATTGAC
Found at i:6661244 original size:6 final size:6
Alignment explanation
Indices: 6661233--6661281 Score: 62
Period size: 6 Copynumber: 8.0 Consensus size: 6
6661223 AGTTTCTCAA
* * *
6661233 AAATGG AAATGG AAATGG AAATGA AAATGA AAATGA AAATGAG AAATGG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATG-G AAATGG
6661282 TTCTTTGGCA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
6 35 0.88
7 5 0.12
ACGTcount: A:0.57, C:0.00, G:0.27, T:0.16
Consensus pattern (6 bp):
AAATGG
Found at i:6661250 original size:12 final size:12
Alignment explanation
Indices: 6661232--6661280 Score: 71
Period size: 12 Copynumber: 4.0 Consensus size: 12
6661222 GAGTTTCTCA
6661232 AAAATGGAAATG
1 AAAATGGAAATG
*
6661244 GAAATGGAAATG
1 AAAATGGAAATG
*
6661256 AAAATGAAAATG
1 AAAATGGAAATG
6661268 AAAATGAGAAATG
1 AAAATG-GAAATG
6661281 GTTCTTTGGC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
12 27 0.84
13 5 0.16
ACGTcount: A:0.59, C:0.00, G:0.24, T:0.16
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:6662943 original size:21 final size:21
Alignment explanation
Indices: 6662899--6662943 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
6662889 AACAGAAGGA
* *
6662899 GGCTGCCGGTGGTCCTACGGT
1 GGCTGACGGTGGTCCTACGAT
6662920 GGCTGACGGTGGT-CTGACGAT
1 GGCTGACGGTGGTCCT-ACGAT
6662941 GGC
1 GGC
6662944 CAACGATAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.09, C:0.24, G:0.44, T:0.22
Consensus pattern (21 bp):
GGCTGACGGTGGTCCTACGAT
Found at i:6667023 original size:22 final size:23
Alignment explanation
Indices: 6666970--6667036 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
6666960 TTAGTCCCTC
*
6666970 CGCCTTTTTTAATGTTTTATAATT
1 CGCCTTTTTTTAT-TTTTATAATT
* **
6666994 AGGTTTTTTTTATTTTT-TAATT
1 CGCCTTTTTTTATTTTTATAATT
6667016 CGCCTTTTAATTTATTTTTAT
1 CGCCTTTT--TTTATTTTTAT
6667037 TTTCAATTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
22 10 0.30
23 4 0.12
24 18 0.55
25 1 0.03
ACGTcount: A:0.19, C:0.09, G:0.07, T:0.64
Consensus pattern (23 bp):
CGCCTTTTTTTATTTTTATAATT
Found at i:6667409 original size:24 final size:24
Alignment explanation
Indices: 6667341--6667424 Score: 71
Period size: 24 Copynumber: 3.3 Consensus size: 24
6667331 TATTTTTCTC
*
6667341 ATATTTATATATATACACATATTTTAT
1 ATATTT-TATATATA-A-ATATTATAT
*
6667368 TTATTTTGATAATATAAATATTATAT
1 ATATTTT-AT-ATATAAATATTATAT
* *
6667394 ATATTTTATATGTAAATCA-TATGT
1 ATATTTTATATATAAAT-ATTATAT
6667418 ATATTTT
1 ATATTTT
6667425 TTAAGCTTCA
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
24 18 0.37
25 3 0.06
26 15 0.31
27 8 0.16
28 5 0.10
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (24 bp):
ATATTTTATATATAAATATTATAT
Found at i:6667638 original size:15 final size:15
Alignment explanation
Indices: 6667618--6667656 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
6667608 ATCGTTAAAA
6667618 TTATTATCATTGTAT
1 TTATTATCATTGTAT
6667633 TTATTA-CTATTGTAT
1 TTATTATC-ATTGTAT
*
6667648 TTGTTATCA
1 TTATTATCA
6667657 CGATATTTGC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 1 0.05
15 19 0.90
16 1 0.05
ACGTcount: A:0.26, C:0.08, G:0.08, T:0.59
Consensus pattern (15 bp):
TTATTATCATTGTAT
Found at i:6679631 original size:44 final size:45
Alignment explanation
Indices: 6679568--6679687 Score: 147
Period size: 44 Copynumber: 2.7 Consensus size: 45
6679558 GATCGCATCT
6679568 AGTCTTATCTCTCTGAAGTTGCAGTGGAGCAAACT-AAGTACG-CA
1 AGTCTTATCTCTCTGAAGTTGCAGTGGAGCAAACTGAAG-ACGCCA
* * *
6679612 AGTCTTATC-CTTCTGAAGTTGCAGTGGGGCAGACTGAAGATGCCA
1 AGTCTTATCTC-TCTGAAGTTGCAGTGGAGCAAACTGAAGACGCCA
** *
6679657 AACCTTATCTCCCTGAAGTTGCAGTGGAGCA
1 AGTCTTATCTCTCTGAAGTTGCAGTGGAGCA
6679688 GGTTAAAGCC
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
43 1 0.02
44 33 0.51
45 30 0.46
46 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (45 bp):
AGTCTTATCTCTCTGAAGTTGCAGTGGAGCAAACTGAAGACGCCA
Found at i:6679678 original size:45 final size:44
Alignment explanation
Indices: 6679571--6679688 Score: 141
Period size: 45 Copynumber: 2.7 Consensus size: 44
6679561 CGCATCTAGT
* **
6679571 CTTATCTCTCTGAAGTTGCAGTGGAGCAAACTAAGTACGCAAGT
1 CTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGTACGCAAAC
* *
6679615 CTTATC-CTTCTGAAGTTGCAGTGGGGCAGACTGAAG-ATGCCAAAC
1 CTTATCTC-TCTGAAGTTGCAGTGGAGCAGACT-AAGTACG-CAAAC
*
6679660 CTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 CTTATCTCTCTGAAGTTGCAGTGGAGCAG
6679689 GTTAAAGCCG
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
43 1 0.02
44 30 0.48
45 31 0.49
46 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (44 bp):
CTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGTACGCAAAC
Found at i:6681561 original size:15 final size:15
Alignment explanation
Indices: 6681541--6681580 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
6681531 ATCGTTAAAA
6681541 TTATTATCATTGTAT
1 TTATTATCATTGTAT
6681556 TTATTA-CTATTGTAT
1 TTATTATC-ATTGTAT
*
6681571 TTGTTATCAT
1 TTATTATCAT
6681581 GATATTTGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 1 0.05
15 20 0.91
16 1 0.05
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.60
Consensus pattern (15 bp):
TTATTATCATTGTAT
Found at i:6682679 original size:53 final size:49
Alignment explanation
Indices: 6682598--6682759 Score: 143
Period size: 53 Copynumber: 3.2 Consensus size: 49
6682588 CATGTGAAAA
* * *
6682598 TGTGATTATGTGA-TTCCGTATAATACCATAGCTAGGCTATGGCATCGATGTG
1 TGTGA-TATGTGATTTCCATGTAAGACCATAGCT-GGCTATGGCATCG--GTG
* * *
6682650 ATGTGATATGTGATTTTCATGTAAGACCATATCTGGCATATGGTATC-G-G
1 -TGTGATATGTGATTTCCATGTAAGACCATAGCTGGC-TATGGCATCGGTG
* * * *
6682699 TGTGATATGTG-TTTCCGTGTAAGACCATAGGTGGGTTATGGCTTCGGTG
1 TGTGATATGTGATTTCCATGTAAGACCATAGCT-GGCTATGGCATCGGTG
6682748 TGTGATATGTGA
1 TGTGATATGTGA
6682760 CGATGTGCAA
Statistics
Matches: 90, Mismatches: 13, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
47 24 0.27
48 14 0.16
49 13 0.14
50 1 0.01
52 10 0.11
53 28 0.31
ACGTcount: A:0.23, C:0.12, G:0.28, T:0.36
Consensus pattern (49 bp):
TGTGATATGTGATTTCCATGTAAGACCATAGCTGGCTATGGCATCGGTG
Found at i:6686549 original size:45 final size:45
Alignment explanation
Indices: 6686482--6686653 Score: 204
Period size: 45 Copynumber: 3.8 Consensus size: 45
6686472 ACGGTAGCAG
* *
6686482 TAACAGTAAAAGTATTCAACACATAAAGTGTCGAATC-GATAACAA
1 TAACAGTAACAGTATTCAACACACAAAGTGTCGAATCAG-TAACAA
* *
6686527 TAACAGTAACAGTATTCGACACACAAAGTG-CGGAATCAGTAACAG
1 TAACAGTAACAGTATTCAACACACAAAGTGTC-GAATCAGTAACAA
* * * * *
6686572 TAACGGTAACAATATTCAACACACAAAGTGCCAAATCAGTAATAA
1 TAACAGTAACAGTATTCAACACACAAAGTGTCGAATCAGTAACAA
** *
6686617 TAATGGTAACAGTATTCGACACACAAAGTGTCGAATC
1 TAACAGTAACAGTATTCAACACACAAAGTGTCGAATC
6686654 GATAACAGTA
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
44 1 0.01
45 106 0.97
46 2 0.02
ACGTcount: A:0.45, C:0.19, G:0.16, T:0.21
Consensus pattern (45 bp):
TAACAGTAACAGTATTCAACACACAAAGTGTCGAATCAGTAACAA
Found at i:6686626 original size:90 final size:90
Alignment explanation
Indices: 6686479--6686664 Score: 245
Period size: 90 Copynumber: 2.1 Consensus size: 90
6686469 GTAACGGTAG
* * *
6686479 CAGTAACAGTAAAAGTATTCAACACATAAAGTGTCGAATCGATAACAATAACAGTAACAGTATTC
1 CAGTAACAGTAAAAGTATTCAACACACAAAGTGCCAAATCGATAACAATAACAGTAACAGTATTC
6686544 GACACACAAAGTG-CGGAATC-AGTAA
66 GACACACAAAGTGTC-GAATCGA-TAA
* * **
6686569 CAGTAACGGTAACAA-TATTCAACACACAAAGTGCCAAATC-AGTAATAATAATGGTAACAGTAT
1 CAGTAACAGTAA-AAGTATTCAACACACAAAGTGCCAAATCGA-TAACAATAACAGTAACAGTAT
6686632 TCGACACACAAAGTGTCGAATCGATAA
64 TCGACACACAAAGTGTCGAATCGATAA
6686659 CAGTAA
1 CAGTAA
6686665 TATTCGACAC
Statistics
Matches: 85, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
89 1 0.01
90 80 0.94
91 4 0.05
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.20
Consensus pattern (90 bp):
CAGTAACAGTAAAAGTATTCAACACACAAAGTGCCAAATCGATAACAATAACAGTAACAGTATTC
GACACACAAAGTGTCGAATCGATAA
Found at i:6686672 original size:36 final size:36
Alignment explanation
Indices: 6686629--6686700 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
6686619 ATGGTAACAG
6686629 TATTCGACACACAAAGTG-TCGAATCGATAACAGTAA
1 TATTCGACACACAAAGTGCT-GAATCGATAACAGTAA
*
6686665 TATTCGACACACAAAGTGCTGAATCGGTAACAGTAA
1 TATTCGACACACAAAGTGCTGAATCGATAACAGTAA
6686701 CGGCAATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 33 0.97
37 1 0.03
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.22
Consensus pattern (36 bp):
TATTCGACACACAAAGTGCTGAATCGATAACAGTAA
Found at i:6686710 original size:42 final size:43
Alignment explanation
Indices: 6686494--6686743 Score: 201
Period size: 45 Copynumber: 5.9 Consensus size: 43
6686484 ACAGTAAAAG
* * * * * * *
6686494 TATTCAACACATAAAGTGTCGAATCGATAACAATAACAGTAACAG
1 TATTCGACACACAAAGTGCCGAATCGGTAACAGTAAC-G-GACAA
* *
6686539 TATTCGACACACAAAGTGCGGAATCAGTAACAGTAACGGTAACAA
1 TATTCGACACACAAAGTGCCGAATCGGTAACAGTAACGG--ACAA
* * * * * * *
6686584 TATTCAACACACAAAGTGCCAAATCAGTAATAATAATGGTAACAG
1 TATTCGACACACAAAGTGCCGAATCGGTAACAGTAACGG--ACAA
* *
6686629 TATTCGACACACAAAGTGTCGAATCGATAACAGT-------AA
1 TATTCGACACACAAAGTGCCGAATCGGTAACAGTAACGGACAA
*
6686665 TATTCGACACACAAAGTGCTGAATCGGTAACAGTAACGG-CAA
1 TATTCGACACACAAAGTGCCGAATCGGTAACAGTAACGGACAA
* *
6686707 TATTCGACACATAAAGTGCCAAATCGGTAACAGTAAC
1 TATTCGACACACAAAGTGCCGAATCGGTAACAGTAAC
6686744 AGTAGTCGGC
Statistics
Matches: 167, Mismatches: 30, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
36 32 0.19
42 36 0.22
44 1 0.01
45 98 0.59
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.21
Consensus pattern (43 bp):
TATTCGACACACAAAGTGCCGAATCGGTAACAGTAACGGACAA
Found at i:6686737 original size:36 final size:36
Alignment explanation
Indices: 6686629--6686739 Score: 114
Period size: 42 Copynumber: 2.9 Consensus size: 36
6686619 ATGGTAACAG
* * *
6686629 TATTCGACACACAAAGTGTCGAATCGATAACAGTAA
1 TATTCGACACACAAAGTGCCGAATCGGTAACAGCAA
*
6686665 TATTCGACACACAAAGTGCTGAATCGGTAACAGTAACGGCAA
1 TATTCGACACACAAAGTGCCGAATCGGTAAC----A--GCAA
* *
6686707 TATTCGACACATAAAGTGCCAAATCGGTAACAG
1 TATTCGACACACAAAGTGCCGAATCGGTAACAG
6686740 TAACAGTAGT
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
36 29 0.47
38 1 0.02
40 1 0.02
42 31 0.50
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.21
Consensus pattern (36 bp):
TATTCGACACACAAAGTGCCGAATCGGTAACAGCAA
Found at i:6693097 original size:10 final size:10
Alignment explanation
Indices: 6693079--6693110 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
6693069 TACCGTCCCC
6693079 ATCATTATAT
1 ATCATTATAT
*
6693089 ATTATTATAT
1 ATCATTATAT
6693099 ATCATTATAT
1 ATCATTATAT
6693109 AT
1 AT
6693111 AATTTTAGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (10 bp):
ATCATTATAT
Found at i:6694209 original size:66 final size:65
Alignment explanation
Indices: 6694130--6694268 Score: 219
Period size: 66 Copynumber: 2.1 Consensus size: 65
6694120 GTTAGTATGA
*
6694130 ATTTTATT-AAAAAATATTTAATAACAAATTATATATTTATAAATTTTAAAAGATTAAATTAATT
1 ATTTTATTAAAAAAAT-TTTAATAACAAATTATATATTTATAAATTTTAAAAGACTAAATT-ATT
6694194 TT
64 TT
*
6694196 ATTTTATTAAAAAAATTTTAATAACAAATTATATATTTATAAATTTTGAAAGACTAAATTATTTT
1 ATTTTATTAAAAAAATTTTAATAACAAATTATATATTTATAAATTTTAAAAGACTAAATTATTTT
6694261 -TTATTATT
1 ATT-TTATT
6694269 TTAAATAGTT
Statistics
Matches: 69, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
64 2 0.03
65 10 0.14
66 50 0.72
67 7 0.10
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.48
Consensus pattern (65 bp):
ATTTTATTAAAAAAATTTTAATAACAAATTATATATTTATAAATTTTAAAAGACTAAATTATTTT
Found at i:6697581 original size:16 final size:16
Alignment explanation
Indices: 6697561--6697601 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
6697551 AATTTGATAC
6697561 AATTTTAATAACAATT
1 AATTTTAATAACAATT
* *
6697577 TATTTTGATAACAATT
1 AATTTTAATAACAATT
6697593 AATTTTAAT
1 AATTTTAAT
6697602 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (16 bp):
AATTTTAATAACAATT
Found at i:6697621 original size:23 final size:24
Alignment explanation
Indices: 6697592--6697636 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
6697582 TGATAACAAT
6697592 TAATTTTAATTTT-ATTAAAAATA
1 TAATTTTAATTTTAATTAAAAATA
6697615 TAATTTTAATTTTAATTAAAAA
1 TAATTTTAATTTTAATTAAAAA
6697637 ATGGGCTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TAATTTTAATTTTAATTAAAAATA
Found at i:6701267 original size:21 final size:20
Alignment explanation
Indices: 6701225--6701269 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
6701215 TTACAGATTG
**
6701225 TTGAATATTTATAATTGCAT
1 TTGAATATTTATAATAACAT
*
6701245 TTGAGATATTTATAATAATAT
1 TTGA-ATATTTATAATAACAT
6701266 TTGA
1 TTGA
6701270 CGTTTAGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (20 bp):
TTGAATATTTATAATAACAT
Found at i:6701687 original size:47 final size:49
Alignment explanation
Indices: 6701629--6701723 Score: 131
Period size: 47 Copynumber: 2.0 Consensus size: 49
6701619 CTATAAATGA
* *
6701629 TTTAGGCGTTACAAGATAATGAATTT-A-GGGGTTATGGACATTCATTC
1 TTTAGGCGTTACAAGAGAATAAATTTGAGGGGGTTATGGACATTCATTC
* * *
6701676 TTTAGGGGTTACAATAGGATAAATTTGAGGGGGTTATGGACATTCATT
1 TTTAGGCGTTACAAGAGAATAAATTTGAGGGGGTTATGGACATTCATT
6701724 TATCAATAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
47 21 0.51
48 1 0.02
49 19 0.46
ACGTcount: A:0.29, C:0.08, G:0.26, T:0.36
Consensus pattern (49 bp):
TTTAGGCGTTACAAGAGAATAAATTTGAGGGGGTTATGGACATTCATTC
Found at i:6705139 original size:27 final size:27
Alignment explanation
Indices: 6705109--6705178 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
6705099 ATTCATTTAG
6705109 AGTACGCCACAAAGGCATTCCTTTCAC
1 AGTACGCCACAAAGGCATTCCTTTCAC
* *
6705136 AGTACGACACAAAGGCATTCCTTTCAT
1 AGTACGCCACAAAGGCATTCCTTTCAC
*
6705163 AGTACACCACAAAGGC
1 AGTACGCCACAAAGGC
6705179 TAACAGGATG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (27 bp):
AGTACGCCACAAAGGCATTCCTTTCAC
Found at i:6708864 original size:21 final size:20
Alignment explanation
Indices: 6708840--6708895 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
6708830 CGTCTTTACT
6708840 TTCTGTTTAGCTCTTACGAG
1 TTCTGTTTAGCTCTTACGAG
* * *
6708860 CTTCTGTTTAACTCATATGAG
1 -TTCTGTTTAGCTCTTACGAG
*
6708881 TGTCCGTTTAGCTCT
1 T-TCTGTTTAGCTCT
6708896 ATTGACCTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
20 1 0.04
21 27 0.96
ACGTcount: A:0.16, C:0.21, G:0.18, T:0.45
Consensus pattern (20 bp):
TTCTGTTTAGCTCTTACGAG
Found at i:6708929 original size:42 final size:42
Alignment explanation
Indices: 6708860--6708966 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
6708850 CTCTTACGAG
* * * * *
6708860 CTTCTGTTTAACTCATATGAGTGTCCGTTTAGCTCTAT-TGAC
1 CTTCTGTTTAACCCTTATGGGTTTCCGTTCAGCT-TATATGAC
* *
6708902 CTTTTGTTTAACCCTTATGGGTTTCCGTTCAGCTTATATGAG
1 CTTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTTATATGAC
**
6708944 CTTCCATTTAACCCTTATGGGTT
1 CTTCTGTTTAACCCTTATGGGTT
6708967 CTATTTAGCA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 3 0.06
42 51 0.94
ACGTcount: A:0.18, C:0.21, G:0.17, T:0.44
Consensus pattern (42 bp):
CTTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTTATATGAC
Found at i:6708991 original size:21 final size:20
Alignment explanation
Indices: 6708938--6708992 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
6708928 GTTCAGCTTA
* *
6708938 TATGAGCTTCCATTTAACCCT
1 TATG-GCTTCTATTTAACACT
* *
6708959 TATGGGTTCTATTTAGCACT
1 TATGGCTTCTATTTAACACT
6708979 TATGTGCTTCTATT
1 TATG-GCTTCTATT
6708993 CAGTCTTCGA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.45
Consensus pattern (20 bp):
TATGGCTTCTATTTAACACT
Found at i:6715916 original size:42 final size:42
Alignment explanation
Indices: 6715861--6715996 Score: 116
Period size: 42 Copynumber: 3.2 Consensus size: 42
6715851 CTTAGCTCCC
* * *
6715861 ATGAGCTTTTGTTTAACTCATAT-GAGTTTCCGTTCAGCTC-T
1 ATGAGCTTCTGTTTAACCCATATAG-GTTTCAGTTCAGCTCTT
*
6715902 ATTGAGCTTCTGTTTAACCCTTATAGGTTTCAGTTCAGCTCTT
1 A-TGAGCTTCTGTTTAACCCATATAGGTTTCAGTTCAGCTCTT
* ** * * * *
6715945 ATGAGCTACCATTTAACCCTTATGGGTTTCTGTTTAGCAT-TT
1 ATGAGCTTCTGTTTAACCCATATAGGTTTCAGTTCAGC-TCTT
*
6715987 ATGTGCTTCT
1 ATGAGCTTCT
6715997 ATTCAGTCTT
Statistics
Matches: 78, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
41 1 0.01
42 73 0.94
43 4 0.05
ACGTcount: A:0.19, C:0.20, G:0.17, T:0.44
Consensus pattern (42 bp):
ATGAGCTTCTGTTTAACCCATATAGGTTTCAGTTCAGCTCTT
Found at i:6715980 original size:21 final size:21
Alignment explanation
Indices: 6715909--6715980 Score: 54
Period size: 21 Copynumber: 3.4 Consensus size: 21
6715899 TCTATTGAGC
*
6715909 TTCTGTTTAACCCTTATAGGT
1 TTCTGTTTAACCCTTATGGGT
* * * * * *
6715930 TTCAGTTCAGCTCTTATGAGC
1 TTCTGTTTAACCCTTATGGGT
* **
6715951 TACCATTTAACCCTTATGGGT
1 TTCTGTTTAACCCTTATGGGT
6715972 TTCTGTTTA
1 TTCTGTTTA
6715981 GCATTTATGT
Statistics
Matches: 33, Mismatches: 18, Indels: 0
0.65 0.35 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.44
Consensus pattern (21 bp):
TTCTGTTTAACCCTTATGGGT
Found at i:6719986 original size:42 final size:42
Alignment explanation
Indices: 6719931--6720066 Score: 116
Period size: 42 Copynumber: 3.2 Consensus size: 42
6719921 CTTAGCTCCC
* * *
6719931 ATGAGCTTTTGTTTAACTCATAT-GAGTTTCCGTTCAGCTC-T
1 ATGAGCTTCTGTTTAACCCATATAG-GTTTCAGTTCAGCTCTT
*
6719972 ATTGAGCTTCTGTTTAACCCTTATAGGTTTCAGTTCAGCTCTT
1 A-TGAGCTTCTGTTTAACCCATATAGGTTTCAGTTCAGCTCTT
* ** * * * *
6720015 ATGAGCTACCATTTAACCCTTATGGGTTTCTGTTTAGCAT-TT
1 ATGAGCTTCTGTTTAACCCATATAGGTTTCAGTTCAGC-TCTT
*
6720057 ATGTGCTTCT
1 ATGAGCTTCT
6720067 ATTCAGTCTT
Statistics
Matches: 78, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
41 1 0.01
42 73 0.94
43 4 0.05
ACGTcount: A:0.19, C:0.20, G:0.17, T:0.44
Consensus pattern (42 bp):
ATGAGCTTCTGTTTAACCCATATAGGTTTCAGTTCAGCTCTT
Found at i:6720050 original size:21 final size:21
Alignment explanation
Indices: 6719979--6720050 Score: 54
Period size: 21 Copynumber: 3.4 Consensus size: 21
6719969 TCTATTGAGC
*
6719979 TTCTGTTTAACCCTTATAGGT
1 TTCTGTTTAACCCTTATGGGT
* * * * * *
6720000 TTCAGTTCAGCTCTTATGAGC
1 TTCTGTTTAACCCTTATGGGT
* **
6720021 TACCATTTAACCCTTATGGGT
1 TTCTGTTTAACCCTTATGGGT
6720042 TTCTGTTTA
1 TTCTGTTTA
6720051 GCATTTATGT
Statistics
Matches: 33, Mismatches: 18, Indels: 0
0.65 0.35 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.44
Consensus pattern (21 bp):
TTCTGTTTAACCCTTATGGGT
Found at i:6729366 original size:42 final size:41
Alignment explanation
Indices: 6729305--6729441 Score: 132
Period size: 42 Copynumber: 3.5 Consensus size: 41
6729295 ATTCATTGGT
6729305 GGTTGCTAAGTGCTGATTCCACCATATCTTAAATGTGAAAG
1 GGTTGCTAAGTGCTGATTCCACCATATCTTAAATGTGAAAG
6729346 GGATTGCTAAGTGCTGATTCC-CCGAT-TC----AT-TG---G
1 GG-TTGCTAAGTGCTGATTCCACC-ATATCTTAAATGTGAAAG
* * *
6729379 TGGTTGCTAAGTGTTGATTCCACCGTATTTTAAATGTGAAAGG
1 -GGTTGCTAAGTGCTGATTCCACCATATCTTAAATGTGAAA-G
*
6729422 GGTTGCTAAGTGTTGATTCC
1 GGTTGCTAAGTGCTGATTCC
6729442 CTTACTCATT
Statistics
Matches: 79, Mismatches: 3, Indels: 27
0.72 0.03 0.25
Matches are distributed among these distances:
33 19 0.24
34 5 0.06
36 2 0.03
37 2 0.03
38 2 0.03
39 2 0.03
41 6 0.08
42 40 0.51
43 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (41 bp):
GGTTGCTAAGTGCTGATTCCACCATATCTTAAATGTGAAAG
Found at i:6729390 original size:75 final size:75
Alignment explanation
Indices: 6729267--6729518 Score: 380
Period size: 75 Copynumber: 3.4 Consensus size: 75
6729257 CTGATTCCCC
*
6729267 AAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCATAT
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
6729332 CTTAAATGTG
66 CTTAAATGTG
* *
6729342 AAAGGGATTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGTTGATTCCACCGTAT
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
*
6729407 TTTAAATGTG
66 CTTAAATGTG
* ** * * *
6729417 AAAGGGGTTGCTAAGTGTTGATTCCCTTACTCATTGGTTGTTGCTAAATGCTGATTCCACCGTAT
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
6729482 CTTAAATGTG
66 CTTAAATGTG
* *
6729492 -AAGTTGGTTGCTAAGTGTTGATTCCCC
1 AAAG-GGGTTGCTAAGTGCTGATTCCCC
6729519 CGAGGGGTAG
Statistics
Matches: 161, Mismatches: 15, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
74 3 0.02
75 158 0.98
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (75 bp):
AAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
CTTAAATGTG
Found at i:6729553 original size:102 final size:102
Alignment explanation
Indices: 6729419--6729620 Score: 280
Period size: 102 Copynumber: 2.0 Consensus size: 102
6729409 TAAATGTGAA
* ** ** * * * *
6729419 AGGGGTTGCTAAGTGTTGATTCCCTTACTCATTGGTTGTTGCTAAATGCTGATTCCACCGTATCT
1 AGGGGTAGCTAAGTACTGATTCCCCGAATCATTGGTGGTTGCTAAATGCTGATCCCACCATATCT
* *
6729484 TAAATGTG-AAGTTGGTTGCTAAGTGTTGATTCCCCCG
66 TAAATGTGAAAG-GGGTTGCTAAGTGCTGATTCCCCCG
*
6729521 AGGGGTAGCTAAGTACTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCATATCT
1 AGGGGTAGCTAAGTACTGATTCCCCGAATCATTGGTGGTTGCTAAATGCTGATCCCACCATATCT
6729586 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCC
66 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCC
6729621 GACTCATTGG
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
102 84 0.97
103 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (102 bp):
AGGGGTAGCTAAGTACTGATTCCCCGAATCATTGGTGGTTGCTAAATGCTGATCCCACCATATCT
TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:6739148 original size:25 final size:25
Alignment explanation
Indices: 6739110--6739179 Score: 72
Period size: 24 Copynumber: 2.8 Consensus size: 25
6739100 GTAGCTCTTA
* *
6739110 TGAACGTCCTGATATATGGCTC-CT
1 TGAACTTCCAGATATATGGCTCGCT
* *
6739134 TGGAGCTTCTAGATAT-TGGCTCGCT
1 T-GAACTTCCAGATATATGGCTCGCT
*
6739159 TGAACTTCCCGATATATGGCT
1 TGAACTTCCAGATATATGGCT
6739180 ATCCAGAGCT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
24 18 0.50
25 18 0.50
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (25 bp):
TGAACTTCCAGATATATGGCTCGCT
Found at i:6740736 original size:4 final size:4
Alignment explanation
Indices: 6740727--6740760 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
6740717 TGATTTCTTA
6740727 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
6740761 CCTTTCTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:6746720 original size:9 final size:9
Alignment explanation
Indices: 6746706--6746738 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
6746696 GTTTTTTATT
6746706 TAATTTCGA
1 TAATTTCGA
6746715 TAATTTCGA
1 TAATTTCGA
*
6746724 TAATTTCAA
1 TAATTTCGA
6746733 TAATTT
1 TAATTT
6746739 TTCTATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (9 bp):
TAATTTCGA
Found at i:6751662 original size:18 final size:18
Alignment explanation
Indices: 6751639--6751675 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
6751629 TATAGTTTGA
*
6751639 TATTCAATTTATTCGAAT
1 TATTCAAATTATTCGAAT
6751657 TATTCAAATTATTCGAAT
1 TATTCAAATTATTCGAAT
6751675 T
1 T
6751676 CGAAAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.11, G:0.05, T:0.49
Consensus pattern (18 bp):
TATTCAAATTATTCGAAT
Found at i:6754224 original size:816 final size:816
Alignment explanation
Indices: 6752653--6754285 Score: 3095
Period size: 816 Copynumber: 2.0 Consensus size: 816
6752643 TTTATGCGAC
*
6752653 TAAGTCTCTAGCTAACCGTTTAGTGTTAAAACAACGTCTATTTACGTTTCGCATGAAAGAATGTG
1 TAAGTCTCTAGCTAACCGTTTAGTGTTAAAACAACGTCTATTTACGTTTCGCATGAAAGAAGGTG
*
6752718 AGCTTCTTAGAGATCACATCAGTCAATTCATTACTCTTTTAAATGATTTAAAGAACGCTGAGGTT
66 AGCTTCTTAAAGATCACATCAGTCAATTCATTACTCTTTTAAATGATTTAAAGAACGCTGAGGTT
* *
6752783 CATATTGATGATGAAGATCAAGCTATGCTATTATTGTGCTCTTTACCCCCTTTATACAAGCCTTT
131 CATATTGACGATGAAGATCAAGCTATGCTATTATTGTGCTCTTTACCCCCTTCATACAAGCCTTT
*
6752848 TAGGGAGACCCTGATTTATGGCAGAGACAAACTCTCGTTCGAAGATGTGAAGGGTCATTTGTTGA
196 CAGGGAGACCCTGATTTATGGCAGAGACAAACTCTCGTTCGAAGATGTGAAGGGTCATTTGTTGA
* *
6752913 GTAGAGACAAACTCGACAATGAGCTTCATTTGGATAGCAAGGCAGATAGACAAGCTTCCGTTTTG
261 GTAGAGACAAACTCGACAATGAGCTTCATTTGAATAGCAAAGCAGATAGACAAGCTTCCGTTTTG
* *
6752978 ATAGCATCAAAGAAACGAGACAAAATGTGTCGCTATTGTAAAAAGTTAGGTCAAGTCAAAGCAGA
326 ATAGCATCAAAGAAACGAGACAAAAGGTGTCGCTATTGCAAAAAGTTAGGTCAAGTCAAAGCAGA
6753043 TTGTTATAAACTGCGAAATAAAAGAGCTGCTGAGAGTAACGAGGAAGATGTAGCTGGTGCTAATT
391 TTGTTATAAACTGCGAAATAAAAGAGCTGCTGAGAGTAACGAGGAAGATGTAGCTGGTGCTAATT
6753108 TGATCGATGAAAGCGGTGATGATTTCTTGTTAGTGTCAACGAGCGATAACTCCAAGCTTACGTCT
456 TGATCGATGAAAGCGGTGATGATTTCTTGTTAGTGTCAACGAGCGATAACTCCAAGCTTACGTCT
6753173 GAGTGGATCCTAGATTCAGGATGTTCTTTCCACATGTGTCCCAATAGAGAATGGTTCTCCACATA
521 GAGTGGATCCTAGATTCAGGATGTTCTTTCCACATGTGTCCCAATAGAGAATGGTTCTCCACATA
6753238 CAGTTCAGTTGAAGGTGGAGTTGTGCACATGGGAAACGATTCATCTAGTAAAATAATCGGTATTG
586 CAGTTCAGTTGAAGGTGGAGTTGTGCACATGGGAAACGATTCATCTAGTAAAATAATCGGTATTG
6753303 GTACTGTTAAAATTAGGATACACGATGGGACGATTAGGACACTCTCAAATGTCAAGTATGTACTT
651 GTACTGTTAAAATTAGGATACACGATGGGACGATTAGGACACTCTCAAATGTCAAGTATGTACTT
6753368 GATTTACGAAAGAACCTCATCTCCTTGAGTATTTTAGACTTGAAAAAATGCAGAATCAACATCGA
716 GATTTACGAAAGAACCTCATCTCCTTGAGTATTTTAGACTTGAAAAAATGCAGAATCAACATCGA
6753433 GTCAAGCGGCATTAAAGTATCTCACGGAGCTCTCGT
781 GTCAAGCGGCATTAAAGTATCTCACGGAGCTCTCGT
*
6753469 TAAGTCTCTAGCTAACCGTTTAGTGTTAAAACAACGTCTATTTACGTTTCGCATGAACGAAGGTG
1 TAAGTCTCTAGCTAACCGTTTAGTGTTAAAACAACGTCTATTTACGTTTCGCATGAAAGAAGGTG
*
6753534 AGCTTCTTAAAGATCACATCAGTCAATTCATTACTCTTTTAAATGATTTAAAGAACGTTGAGGTT
66 AGCTTCTTAAAGATCACATCAGTCAATTCATTACTCTTTTAAATGATTTAAAGAACGCTGAGGTT
* *
6753599 CATATTGACGATGAAGATCAAGCTATGCTATTATTGTGCTCTTTACCCTCTTCATACAAGTCTTT
131 CATATTGACGATGAAGATCAAGCTATGCTATTATTGTGCTCTTTACCCCCTTCATACAAGCCTTT
6753664 CAGGGAGACCCTGATTTATGGCAGAGACAAACTCTCGTTCGAAGATGTGAAGGGTCATTTGTTGA
196 CAGGGAGACCCTGATTTATGGCAGAGACAAACTCTCGTTCGAAGATGTGAAGGGTCATTTGTTGA
* *
6753729 GTAGAGACAAACTCGACAATGAGTTTGATTTGAATAGCAAAGCAGATAGACAAGCTTCCGTTTTG
261 GTAGAGACAAACTCGACAATGAGCTTCATTTGAATAGCAAAGCAGATAGACAAGCTTCCGTTTTG
* *
6753794 GTAGCATCAAAGAAACGAGACAAAAGGTGTCGCTATTGCAAAAAGTTAGGTCACGTCAAAGCAGA
326 ATAGCATCAAAGAAACGAGACAAAAGGTGTCGCTATTGCAAAAAGTTAGGTCAAGTCAAAGCAGA
6753859 TTGTTATAAACTGCGAAATAAAAGAGCTGCTGAGAGTAACGAGGAAGATGTAGCTGGTGCTAATT
391 TTGTTATAAACTGCGAAATAAAAGAGCTGCTGAGAGTAACGAGGAAGATGTAGCTGGTGCTAATT
* *
6753924 TGGTCGATGAAGGCGGTGATGATTTCTTGTTAGTGTCAACGAGCGATAACTCCAAGCTTACGTCT
456 TGATCGATGAAAGCGGTGATGATTTCTTGTTAGTGTCAACGAGCGATAACTCCAAGCTTACGTCT
6753989 GAGTGGATCCTAGATTCAGGATGTTCTTTCCACATGTGTCCCAATAGAGAATGGTTCTCCACATA
521 GAGTGGATCCTAGATTCAGGATGTTCTTTCCACATGTGTCCCAATAGAGAATGGTTCTCCACATA
6754054 CAGTTCAGTTGAAGGTGGAGTTGTGCACATGGGAAACGATTCATCTAGTAAAATAATCGGTATTG
586 CAGTTCAGTTGAAGGTGGAGTTGTGCACATGGGAAACGATTCATCTAGTAAAATAATCGGTATTG
6754119 GTACTGTTAAAATTAGGATACACGATGGGACGATTAGGACACTCTCAAATGTCAAGTATGTACTT
651 GTACTGTTAAAATTAGGATACACGATGGGACGATTAGGACACTCTCAAATGTCAAGTATGTACTT
6754184 GATTTACGAAAGAACCTCATCTCCTTGAGTATTTTAGACTTGAAAAAATGCAGAATCAACATCGA
716 GATTTACGAAAGAACCTCATCTCCTTGAGTATTTTAGACTTGAAAAAATGCAGAATCAACATCGA
6754249 GTCAAGCGGCATTAAAGTATCTCACGGAGCTCTCGT
781 GTCAAGCGGCATTAAAGTATCTCACGGAGCTCTCGT
6754285 T
1 T
6754286 TTGTTAAAAT
Statistics
Matches: 798, Mismatches: 19, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
816 798 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (816 bp):
TAAGTCTCTAGCTAACCGTTTAGTGTTAAAACAACGTCTATTTACGTTTCGCATGAAAGAAGGTG
AGCTTCTTAAAGATCACATCAGTCAATTCATTACTCTTTTAAATGATTTAAAGAACGCTGAGGTT
CATATTGACGATGAAGATCAAGCTATGCTATTATTGTGCTCTTTACCCCCTTCATACAAGCCTTT
CAGGGAGACCCTGATTTATGGCAGAGACAAACTCTCGTTCGAAGATGTGAAGGGTCATTTGTTGA
GTAGAGACAAACTCGACAATGAGCTTCATTTGAATAGCAAAGCAGATAGACAAGCTTCCGTTTTG
ATAGCATCAAAGAAACGAGACAAAAGGTGTCGCTATTGCAAAAAGTTAGGTCAAGTCAAAGCAGA
TTGTTATAAACTGCGAAATAAAAGAGCTGCTGAGAGTAACGAGGAAGATGTAGCTGGTGCTAATT
TGATCGATGAAAGCGGTGATGATTTCTTGTTAGTGTCAACGAGCGATAACTCCAAGCTTACGTCT
GAGTGGATCCTAGATTCAGGATGTTCTTTCCACATGTGTCCCAATAGAGAATGGTTCTCCACATA
CAGTTCAGTTGAAGGTGGAGTTGTGCACATGGGAAACGATTCATCTAGTAAAATAATCGGTATTG
GTACTGTTAAAATTAGGATACACGATGGGACGATTAGGACACTCTCAAATGTCAAGTATGTACTT
GATTTACGAAAGAACCTCATCTCCTTGAGTATTTTAGACTTGAAAAAATGCAGAATCAACATCGA
GTCAAGCGGCATTAAAGTATCTCACGGAGCTCTCGT
Found at i:6755343 original size:730 final size:733
Alignment explanation
Indices: 6753890--6755353 Score: 2772
Period size: 730 Copynumber: 2.0 Consensus size: 733
6753880 AAGAGCTGCT
* **
6753890 GAGAGTAACGAGGAAGATGTAGCTGGTGCTAATTTGGTCGATGAAGGCGGTGATGATTTCTTGTT
1 GAGAGTAACGAGGAAGATGTAGCTGGTGCTAATTTGATCGATGAAAACGGTGATGATTTCTTGTT
* * * *
6753955 AGTGTCAACGAGCGATAACTCCAAGCTTACGTCTGAGTGGATCCTAGATTCAGGATGTTCTTTCC
66 AGTGTCAACAAGCAATAACTCCAAGCTCACGTCCGAGTGGATCCTAGATTCAGGATGTTCTTTCC
6754020 ACATGTGTCCCAATAGAGAATGGTTCTCCACATACAGTTCAGTTGAAGGTGGAGTTGTGCACATG
131 ACATGTGTCCCAATAGAGAATGGTTCTCCACATACAGTTCAGTTGAAGGTGGAGTTGTGCACATG
*
6754085 GGAAACGATTCATCTAGTAAAATAATCGGTATTGGTACTGTTAAAATTAGGATACACGATGGGAC
196 GGAAACGATTCATCTAGTAAAATAATCGGTATTGGTACTGTTAAAATTAAGATACACGATGGGAC
6754150 GATTAGGACACTCTCAAATGTCAAGTATGTACTTGATTTACGAAAGAACCTCATCTCCTTGAGTA
261 GATTAGGACACTCTCAAATGTCAAGTATGTACTTGATTTACGAAAGAACCTCATCTCCTTGAGTA
6754215 TTTTAGACTTGAAAAAATGCAGAATCAACATCGAGTCAAGCGGCATTAAAGTATCTCACGGAGCT
326 TTTTAGACTTGAAAAAATGCAGAATCAACATCGAGTCAAGCGGCATTAAAGTATCTCACGGAGCT
6754280 CTCGTTTTGTTAAAATGTAAAAGAACTGGCAGTCTTTATATTCTGGAAGGTTCTACAGTCACCGG
391 CTCGTTTTGTTAAAATGTAAAAGAACTGGCAGTCTTTATATTCTGGAAGGTTCTACAGTCACCGG
6754345 TGAAATCGGATGTCCCTTGTCCGTTACAGAGTCGAAGTCAACTTGTTTGGAGCAGAGGCAACTTG
456 TGAAATCGGATGTCCCTTGTCCGTTACAGAGTCGAAGTCAACTTGTTTGGAGCAGAGGCAACTTG
6754410 GTCATAGGAGGGAAAAATGTATGACCATTTTGTTAAAGAGAGGTTCTGTTTTGGATGCAGGTTTT
521 GTCATAGGAGGGAAAAATGTATGACCATTTTGTTAAAGAGAGGTTCTGTTTTGGATGCAGGTTTT
6754475 GAAAAGTTAGGGCACTGTGTTCGTGAAAATCAGACCCGGGTTAGTTTTGATTTGGCAGTGTACAA
586 GAAAAGTTAGGGCACTGTGTTCGTGAAAATCAGACCCGGGTTAGTTTTGATTTGGCAGTGTACAA
6754540 GTCAAAGGCTAGAAGTCTTCCAGTTTCTGAGCACAGATTCGACTCAGTTAATTCCCTGTATGGTT
651 GTCAAAGGCTAGAAGTCTTCCAGTTTCTGAGCACAGATTCGACTCAGTTAATTCCCTGTATGGTT
6754605 CAAGATAGGCTCGTGGTG
716 CAAGATAGGCTCGTGGTG
6754623 GAGAGTAACGAGGAAGATGTAGCTGGTGCTAATTTGATCGATGAAAAC-G-G-TGATTTCTTGTT
1 GAGAGTAACGAGGAAGATGTAGCTGGTGCTAATTTGATCGATGAAAACGGTGATGATTTCTTGTT
*
6754685 AGTGTCAACAAGCAATAACTCCAAGCTCACGTCCGAGTGGATCCTAGATTCGGGATGTTCTTTCC
66 AGTGTCAACAAGCAATAACTCCAAGCTCACGTCCGAGTGGATCCTAGATTCAGGATGTTCTTTCC
* * *
6754750 ACATGTGTCTCAATAGAGAATGGTTCTCCACATACAGTTCGGTTGAAGGTGGAGTTGTGCGCATG
131 ACATGTGTCCCAATAGAGAATGGTTCTCCACATACAGTTCAGTTGAAGGTGGAGTTGTGCACATG
** *
6754815 GGAAACGATTCATCTAGTAAGGTAATTGGTATTGGTACTGTTAAAATTAAGATACACGATGGGAC
196 GGAAACGATTCATCTAGTAAAATAATCGGTATTGGTACTGTTAAAATTAAGATACACGATGGGAC
6754880 GATTAGGACACTCTCAAATGTCAAGTATGTACTTGATTTACGAAAGAACCTCATCTCCTTGAGTA
261 GATTAGGACACTCTCAAATGTCAAGTATGTACTTGATTTACGAAAGAACCTCATCTCCTTGAGTA
6754945 TTTTAGACTTGAAAAAATGCAGAATCAACATCGAGTCAAGCGGCATTAAAGTATCTCACGGAGCT
326 TTTTAGACTTGAAAAAATGCAGAATCAACATCGAGTCAAGCGGCATTAAAGTATCTCACGGAGCT
6755010 CTCGTTTTGTTAAAATGTAAAAGAACTGGCAGTCTTTATATTCTGGAAGGTTCTACAGTCACCGG
391 CTCGTTTTGTTAAAATGTAAAAGAACTGGCAGTCTTTATATTCTGGAAGGTTCTACAGTCACCGG
6755075 TGAAATCGGATGTCCCTTGTCCGTTACAGAGTCGAAGTCAACTTGTTTGGAGCAGAGGCAACTTG
456 TGAAATCGGATGTCCCTTGTCCGTTACAGAGTCGAAGTCAACTTGTTTGGAGCAGAGGCAACTTG
6755140 GTCATAGGAGGGAAAAATGTATGACCATTTTGTTAAAGAGAGGTTCTGTTTTGGATGCAGGTTTT
521 GTCATAGGAGGGAAAAATGTATGACCATTTTGTTAAAGAGAGGTTCTGTTTTGGATGCAGGTTTT
6755205 GAAAAGTTAGGGCACTGTGTTCGTGAAAATCAGACCCGGGTTAGTTTTGATTTGGCAGTGTACAA
586 GAAAAGTTAGGGCACTGTGTTCGTGAAAATCAGACCCGGGTTAGTTTTGATTTGGCAGTGTACAA
6755270 GTCAAAGGCTAGAAGTCTTCCAGTTTCTGAGCACAGATTCGACTCAGTTAATTCCCTGTATGGTT
651 GTCAAAGGCTAGAAGTCTTCCAGTTTCTGAGCACAGATTCGACTCAGTTAATTCCCTGTATGGTT
6755335 CAAGATAGGCTCGTGGTG
716 CAAGATAGGCTCGTGGTG
6755353 G
1 G
6755354 GCTTTGGCAA
Statistics
Matches: 716, Mismatches: 15, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
730 669 0.93
731 1 0.00
732 1 0.00
733 45 0.06
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (733 bp):
GAGAGTAACGAGGAAGATGTAGCTGGTGCTAATTTGATCGATGAAAACGGTGATGATTTCTTGTT
AGTGTCAACAAGCAATAACTCCAAGCTCACGTCCGAGTGGATCCTAGATTCAGGATGTTCTTTCC
ACATGTGTCCCAATAGAGAATGGTTCTCCACATACAGTTCAGTTGAAGGTGGAGTTGTGCACATG
GGAAACGATTCATCTAGTAAAATAATCGGTATTGGTACTGTTAAAATTAAGATACACGATGGGAC
GATTAGGACACTCTCAAATGTCAAGTATGTACTTGATTTACGAAAGAACCTCATCTCCTTGAGTA
TTTTAGACTTGAAAAAATGCAGAATCAACATCGAGTCAAGCGGCATTAAAGTATCTCACGGAGCT
CTCGTTTTGTTAAAATGTAAAAGAACTGGCAGTCTTTATATTCTGGAAGGTTCTACAGTCACCGG
TGAAATCGGATGTCCCTTGTCCGTTACAGAGTCGAAGTCAACTTGTTTGGAGCAGAGGCAACTTG
GTCATAGGAGGGAAAAATGTATGACCATTTTGTTAAAGAGAGGTTCTGTTTTGGATGCAGGTTTT
GAAAAGTTAGGGCACTGTGTTCGTGAAAATCAGACCCGGGTTAGTTTTGATTTGGCAGTGTACAA
GTCAAAGGCTAGAAGTCTTCCAGTTTCTGAGCACAGATTCGACTCAGTTAATTCCCTGTATGGTT
CAAGATAGGCTCGTGGTG
Found at i:6756792 original size:96 final size:96
Alignment explanation
Indices: 6756630--6756808 Score: 211
Period size: 96 Copynumber: 1.8 Consensus size: 96
6756620 GCTCATACTC
***
6756630 TTTTTTTGCACTCGATTAAGTACTTGAACTTTCAAAATGCATCTTCAAACCTTTTCAAAAAG-AA
1 TTTTTTTGCACTCGATTAAGTACTTGAACTTTCAAAATGCATCAAAAAACC-TTTCAAAAAGAAA
*
6756694 AAAGCAATTAAGCCCCTACTCTTTTCTTTTCT
65 AAAACAATTAAGCCCCTACTCTTTTCTTTTCT
* ** * *
6756726 TTTTTTTTCACTCGATTGGGTATTTGAACTTTCAAAATGCATCAAAAAGACC-TTCAAACTTTA-
1 TTTTTTTGCACTCGATTAAGTACTTGAACTTTCAAAATGCATCAAAAA-ACCTTTCAAA---AAG
6756789 AAAAAAACAATTAAGCCCCT
62 AAAAAAACAATTAAGCCCCT
6756809 GCTTTTATTA
Statistics
Matches: 69, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
95 6 0.09
96 41 0.59
97 3 0.04
98 19 0.28
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (96 bp):
TTTTTTTGCACTCGATTAAGTACTTGAACTTTCAAAATGCATCAAAAAACCTTTCAAAAAGAAAA
AAACAATTAAGCCCCTACTCTTTTCTTTTCT
Found at i:6757384 original size:88 final size:89
Alignment explanation
Indices: 6757274--6757461 Score: 256
Period size: 88 Copynumber: 2.1 Consensus size: 89
6757264 ATAATTTTCT
* ** * *
6757274 AATAAAAACAGGGGCTTAATTGC-TTTTTTGAAAAATTTTAAAGGTCTTTTTTATGCATTTTGAA
1 AATAAAAAAAGGGGCTTAATTGCTTTTTTTGAAAAAGCTT-AAGGGCTTTTTGATGCATTTTGAA
6757338 AGTTCAAGTAC-CCATTGAGTG-AA
65 AGTTCAAGTACTCCATTGAGTGCAA
*
6757361 AATAAAAAGAAGGGGCTTAATTGCTTTTTTTGAAGAAGCTTAAGGGCTTTTTGATGCATTTTGAA
1 AATAAAAA-AAGGGGCTTAATTGCTTTTTTTGAAAAAGCTTAAGGGCTTTTTGATGCATTTTGAA
*
6757426 AGTTCAAGTGCTCCATTGAGTGCAA
65 AGTTCAAGTACTCCATTGAGTGCAA
*
6757451 AAAAGAAAAAA
1 AATA-AAAAAA
6757462 AGAGGAAGGG
Statistics
Matches: 88, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
87 8 0.09
88 46 0.52
89 23 0.26
90 7 0.08
91 4 0.05
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (89 bp):
AATAAAAAAAGGGGCTTAATTGCTTTTTTTGAAAAAGCTTAAGGGCTTTTTGATGCATTTTGAAA
GTTCAAGTACTCCATTGAGTGCAA
Found at i:6763647 original size:29 final size:29
Alignment explanation
Indices: 6763566--6763637 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
6763556 TAATAAAACA
* *
6763566 AAGAGCTT-TTATAAGTAAAAATCATAGATT
1 AAGAGCTTATT-TAACTAAAAA-AATAGATT
*
6763596 AAGAGCTTATTTAACTACAAAAATAGATT
1 AAGAGCTTATTTAACTAAAAAAATAGATT
*
6763625 GAGAGCTTATTTA
1 AAGAGCTTATTTA
6763638 TTAAATAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 19 0.51
30 16 0.43
31 2 0.05
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.33
Consensus pattern (29 bp):
AAGAGCTTATTTAACTAAAAAAATAGATT
Found at i:6767687 original size:21 final size:21
Alignment explanation
Indices: 6767663--6767707 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
6767653 AAATTAATTA
6767663 ATTTCACATTAAT-ATATTATT
1 ATTTCA-ATTAATCATATTATT
* *
6767684 ATTTTAATTAATCTTATTATT
1 ATTTCAATTAATCATATTATT
6767705 ATT
1 ATT
6767708 ATTATATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTTCAATTAATCATATTATT
Found at i:6768569 original size:20 final size:20
Alignment explanation
Indices: 6768541--6768580 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
6768531 AAAATATTAA
6768541 TATTATTTTG-ATATATTTTT
1 TATTATTTTGTA-ATATTTTT
*
6768561 TATTTTTTTGTAATATTTTT
1 TATTATTTTGTAATATTTTT
6768581 GTAAAAAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (20 bp):
TATTATTTTGTAATATTTTT
Found at i:6773673 original size:11 final size:11
Alignment explanation
Indices: 6773634--6773675 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
6773624 GGGTCTTTTA
* *
6773634 CAAAAATATTT
1 CAAAAAAATAT
6773645 CAAAAAAATA-
1 CAAAAAAATAT
6773655 -AAAAAAATAT
1 CAAAAAAATAT
6773665 CAAAAAAATAT
1 CAAAAAAATAT
6773676 TAAATTGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 9 0.33
11 18 0.67
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (11 bp):
CAAAAAAATAT
Found at i:6776120 original size:69 final size:69
Alignment explanation
Indices: 6776039--6776176 Score: 276
Period size: 69 Copynumber: 2.0 Consensus size: 69
6776029 TACAATCTGG
6776039 TTTTTAGTACAAGAACTCTCATGTTACTTTTACTCCTTTTTATTGATTCTAATGATGCATGCAAA
1 TTTTTAGTACAAGAACTCTCATGTTACTTTTACTCCTTTTTATTGATTCTAATGATGCATGCAAA
6776104 GTAA
66 GTAA
6776108 TTTTTAGTACAAGAACTCTCATGTTACTTTTACTCCTTTTTATTGATTCTAATGATGCATGCAAA
1 TTTTTAGTACAAGAACTCTCATGTTACTTTTACTCCTTTTTATTGATTCTAATGATGCATGCAAA
6776173 GTAA
66 GTAA
6776177 ATAAAAAATT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (69 bp):
TTTTTAGTACAAGAACTCTCATGTTACTTTTACTCCTTTTTATTGATTCTAATGATGCATGCAAA
GTAA
Found at i:6777292 original size:3 final size:3
Alignment explanation
Indices: 6777284--6777318 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
6777274 TGATGACAAT
*
6777284 GAA GAA GAA GAA GAA GAA GAA GAA GAG GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
6777319 GGAGAATGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:6792487 original size:28 final size:27
Alignment explanation
Indices: 6792454--6792536 Score: 89
Period size: 27 Copynumber: 3.0 Consensus size: 27
6792444 TAAAAATAGT
*
6792454 TTTAAAATTTTAAAATATTTATAAAAA
1 TTTAAAATTTTAAAATATTTAAAAAAA
*
6792481 TTCTAAAA-TTT-ATATATTTTAAAAAAA
1 TT-TAAAATTTTAAAATA-TTTAAAAAAA
* *
6792508 ATTAAAATTTTAAAAAATTCTAAAAAAA
1 TTTAAAATTTTAAAATATT-TAAAAAAA
6792536 T
1 T
6792537 AAAAAAGTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
26 9 0.20
27 20 0.44
28 16 0.36
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (27 bp):
TTTAAAATTTTAAAATATTTAAAAAAA
Found at i:6792496 original size:20 final size:20
Alignment explanation
Indices: 6792428--6792489 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
6792418 CTCTCTCAAC
* *
6792428 AAAA-ATTTAAAAAAATT-A
1 AAAATATTTATAAAAATTCT
*
6792446 AAAATAGTTT-T-AAAATTTT
1 AAAATA-TTTATAAAAATTCT
6792465 AAAATATTTATAAAAATTCT
1 AAAATATTTATAAAAATTCT
6792485 AAAAT
1 AAAAT
6792490 TTATATATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
18 13 0.36
19 8 0.22
20 15 0.42
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (20 bp):
AAAATATTTATAAAAATTCT
Found at i:6792506 original size:18 final size:18
Alignment explanation
Indices: 6792485--6792524 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
6792475 TAAAAATTCT
*
6792485 AAAATTTATATATTTTAAA
1 AAAATTTA-AAATTTTAAA
*
6792504 AAAAATTAAAATTTTAAA
1 AAAATTTAAAATTTTAAA
6792522 AAA
1 AAA
6792525 TTCTAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATTTAAAATTTTAAA
Found at i:6792541 original size:35 final size:36
Alignment explanation
Indices: 6792502--6792575 Score: 98
Period size: 37 Copynumber: 2.1 Consensus size: 36
6792492 ATATATTTTA
6792502 AAAAAAATTAAAATTTT-AAAA-AATTCTAAAAAAAT
1 AAAAAAATT-AAATTTTAAAAATAATTCTAAAAAAAT
* *
6792537 AAAAAAGTTAAATTTTCAAAAATAATTCTAAAATAAT
1 AAAAAAATTAAATTTT-AAAAATAATTCTAAAAAAAT
6792574 AA
1 AA
6792576 TTTTGAAGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 7 0.21
35 8 0.24
36 4 0.12
37 15 0.44
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.30
Consensus pattern (36 bp):
AAAAAAATTAAATTTTAAAAATAATTCTAAAAAAAT
Found at i:6795216 original size:7 final size:7
Alignment explanation
Indices: 6795206--6795232 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
6795196 TTTTTTGGCT
6795206 TTTAGGG
1 TTTAGGG
6795213 TTTAGGG
1 TTTAGGG
6795220 TTTAGGG
1 TTTAGGG
6795227 TTTAGG
1 TTTAGG
6795233 CTTTTTAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:6796001 original size:31 final size:32
Alignment explanation
Indices: 6795965--6796029 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
6795955 CTTAGATAAT
*
6795965 TTTAAAGAG-TTTTATTATGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
6795996 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
6796028 TT
1 TT
6796030 GTAATTTGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 9 0.28
32 23 0.72
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.49
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:6802202 original size:31 final size:32
Alignment explanation
Indices: 6802166--6802230 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
6802156 CTTATATAAT
6802166 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
6802197 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
6802229 TT
1 TT
6802231 GTAATTTGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 9 0.27
32 24 0.73
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:6804003 original size:7 final size:7
Alignment explanation
Indices: 6803993--6804024 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
6803983 TTATATACAT
6803993 AATACTA
1 AATACTA
6804000 AATACTA
1 AATACTA
6804007 AATACTA
1 AATACTA
*
6804014 AATACAA
1 AATACTA
6804021 AATA
1 AATA
6804025 TCTATTTGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25
Consensus pattern (7 bp):
AATACTA
Found at i:6804010 original size:14 final size:14
Alignment explanation
Indices: 6803987--6804024 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
6803977 TATTAGTTAT
*
6803987 ATACATAATACTAA
1 ATACAAAATACTAA
*
6804001 ATACTAAATACTAA
1 ATACAAAATACTAA
6804015 ATACAAAATA
1 ATACAAAATA
6804025 TCTATTTGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (14 bp):
ATACAAAATACTAA
Found at i:6813211 original size:21 final size:22
Alignment explanation
Indices: 6813181--6813222 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
6813171 CACTTCACAA
*
6813181 TCATAAGTCATACATCATCATC
1 TCATAAGTCAAACATCATCATC
*
6813203 TCAT-AGTCAAATATCATCAT
1 TCATAAGTCAAACATCATCAT
6813223 AAAGTCCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (22 bp):
TCATAAGTCAAACATCATCATC
Found at i:6818620 original size:33 final size:33
Alignment explanation
Indices: 6818474--6818609 Score: 227
Period size: 33 Copynumber: 4.1 Consensus size: 33
6818464 CTCTGTTTGT
* * *
6818474 TGTGATGGTTGGTTTAACTTTTATGAGCATTGG
1 TGTGATGGTTGGATTAGCTCTTATGAGCATTGG
* *
6818507 TGTGATGGTTTGTTTAGCTCTTATGAGCATTGG
1 TGTGATGGTTGGATTAGCTCTTATGAGCATTGG
6818540 TGTGATGGTTGGATTAGCTCTTATGAGCATTGG
1 TGTGATGGTTGGATTAGCTCTTATGAGCATTGG
6818573 TGTGATGGTTGGATTAGCTCTTATGAGCATTGG
1 TGTGATGGTTGGATTAGCTCTTATGAGCATTGG
6818606 TGTG
1 TGTG
6818610 TTGGAGGGAT
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 98 1.00
ACGTcount: A:0.17, C:0.08, G:0.32, T:0.43
Consensus pattern (33 bp):
TGTGATGGTTGGATTAGCTCTTATGAGCATTGG
Found at i:6820987 original size:41 final size:41
Alignment explanation
Indices: 6820942--6821021 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
6820932 TGAGTCCAAA
*
6820942 TCATGCAAATTAACCATTTTTAATACAAACACATGCTAGAC
1 TCATGCAAATTAACCATTTCTAATACAAACACATGCTAGAC
*
6820983 TCATGCAAATTAACCATTTCTAATACAAACCCATGCTAG
1 TCATGCAAATTAACCATTTCTAATACAAACACATGCTAG
6821022 CAAAATATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.40, C:0.24, G:0.07, T:0.29
Consensus pattern (41 bp):
TCATGCAAATTAACCATTTCTAATACAAACACATGCTAGAC
Found at i:6829945 original size:21 final size:20
Alignment explanation
Indices: 6829919--6829964 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
6829909 ACAAATTTTT
* *
6829919 TTTTAAATAACTTTAAGATGA
1 TTTTAAAT-ACTTCAAAATGA
*
6829940 TTTTAAATCCTTCAAAATGA
1 TTTTAAATACTTCAAAATGA
6829960 TTTTA
1 TTTTA
6829965 TATCGTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.46
Consensus pattern (20 bp):
TTTTAAATACTTCAAAATGA
Found at i:6830820 original size:9 final size:9
Alignment explanation
Indices: 6830806--6830845 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
6830796 TATATTATAA
6830806 ATTAAAATT
1 ATTAAAATT
6830815 ATTAAAATT
1 ATTAAAATT
6830824 ATTAAAAAATT
1 ATT--AAAATT
*
6830835 ATAAAAATT
1 ATTAAAATT
6830844 AT
1 AT
6830846 AATTTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 20 0.71
11 8 0.29
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
ATTAAAATT
Found at i:6830824 original size:15 final size:17
Alignment explanation
Indices: 6830792--6830824 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
6830782 AAAAAATTAA
6830792 AAAATATATTATAAATT
1 AAAATATATTATAAATT
6830809 AAAAT-TATTA-AAATT
1 AAAATATATTATAAATT
6830824 A
1 A
6830825 TTAAAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 5 0.31
17 5 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATATATTATAAATT
Found at i:6838155 original size:7 final size:7
Alignment explanation
Indices: 6838145--6838170 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
6838135 TTTTATATTT
6838145 TTTAAAA
1 TTTAAAA
6838152 TTTAAAA
1 TTTAAAA
6838159 TTTAAAA
1 TTTAAAA
6838166 TTTAA
1 TTTAA
6838171 CCCTTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
TTTAAAA
Found at i:6838356 original size:31 final size:31
Alignment explanation
Indices: 6838321--6838382 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
6838311 AAACACAAAT
6838321 TTAACAAAACAA-TACATACTAACAGTTAAAC
1 TTAACAAAACAATTA-ATACTAACAGTTAAAC
*
6838352 TTAACAAAACAATTAATGCTAACAGTTAAAC
1 TTAACAAAACAATTAATACTAACAGTTAAAC
6838383 CTAAATGTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 27 0.93
32 2 0.07
ACGTcount: A:0.53, C:0.18, G:0.05, T:0.24
Consensus pattern (31 bp):
TTAACAAAACAATTAATACTAACAGTTAAAC
Found at i:6862420 original size:43 final size:43
Alignment explanation
Indices: 6862371--6862501 Score: 174
Period size: 43 Copynumber: 3.0 Consensus size: 43
6862361 AAAACGCAAT
* * *
6862371 AGAACATGACCTTTAGTGGCACTTTTCCCACAAACGCCGTTAA
1 AGAACATGACCTTTAGTGACGCTTTTCCCACAAACGCCGCTAA
*
6862414 AGAACATGACCTTTAGTGACGC-TTTCCCTACAAACGCCACTAA
1 AGAACATGACCTTTAGTGACGCTTTTCCC-ACAAACGCCGCTAA
* * * *
6862457 AGTACATGACCTTTAGCGATGCTTTTCCCAAAAACGCCGCTAA
1 AGAACATGACCTTTAGTGACGCTTTTCCCACAAACGCCGCTAA
6862500 AG
1 AG
6862502 GTCATGTTCT
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
42 6 0.08
43 65 0.84
44 6 0.08
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (43 bp):
AGAACATGACCTTTAGTGACGCTTTTCCCACAAACGCCGCTAA
Found at i:6862976 original size:66 final size:65
Alignment explanation
Indices: 6862858--6862988 Score: 167
Period size: 66 Copynumber: 2.0 Consensus size: 65
6862848 TCTGAAGCTG
*
6862858 TAGCTAGAGTTCGTCATATTTTCTGCTTACCTCTACTTCCCTCACTATTGCCTCCGCTTTAAGTT
1 TAGCTAGAGTTCGTCATATTTTCT-CTTACCTCTACTTCCCTCACTACTGCCTCCGCTTTAAGTT
6862923 A
65 A
* * * *
6862924 TAGCTAGAGTTCTTCATATTTTCT-TTGAGCCTCTACTTCTCTCGA-TGCTGCCTGCGCTTTAAG
1 TAGCTAGAGTTCGTCATATTTTCTCTT-A-CCTCTACTTCCCTC-ACTACTGCCTCCGCTTTAAG
6862987 TT
63 TT
6862989 GAGCAATTTG
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
64 2 0.04
65 1 0.02
66 53 0.93
67 1 0.02
ACGTcount: A:0.17, C:0.27, G:0.15, T:0.42
Consensus pattern (65 bp):
TAGCTAGAGTTCGTCATATTTTCTCTTACCTCTACTTCCCTCACTACTGCCTCCGCTTTAAGTTA
Found at i:6867765 original size:9 final size:9
Alignment explanation
Indices: 6867717--6867816 Score: 59
Period size: 9 Copynumber: 11.6 Consensus size: 9
6867707 TTTTATATAT
6867717 TTATGTAAG
1 TTATGTAAG
*
6867726 TTATGATATG
1 TTATG-TAAG
* * *
6867736 ATATAT-AT
1 TTATGTAAG
6867744 TTATGT-A-
1 TTATGTAAG
6867751 TTATGTAAG
1 TTATGTAAG
6867760 TTATGTAAG
1 TTATGTAAG
*
6867769 TTACGTAAG
1 TTATGTAAG
*
6867778 TTATGATATG
1 TTATG-TAAG
* * *
6867788 ATATAT-AT
1 TTATGTAAG
6867796 TTATGT-A-
1 TTATGTAAG
6867803 TTATGTAAG
1 TTATGTAAG
6867812 TTATG
1 TTATG
6867817 ATCCAAAGTT
Statistics
Matches: 69, Mismatches: 16, Indels: 12
0.71 0.16 0.12
Matches are distributed among these distances:
7 12 0.17
8 12 0.17
9 33 0.48
10 12 0.17
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:6870993 original size:23 final size:24
Alignment explanation
Indices: 6870949--6871000 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
6870939 AGATTTGAAT
*
6870949 GAAGAGAACGAGAGAAATTTGAGC
1 GAAGAGAACGAAAGAAATTTGAGC
*
6870973 GAAGAGAAC-AAATAAATTTGAGC
1 GAAGAGAACGAAAGAAATTTGAGC
6870996 GAAGA
1 GAAGA
6871001 TTTGAAAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.50, C:0.08, G:0.29, T:0.13
Consensus pattern (24 bp):
GAAGAGAACGAAAGAAATTTGAGC
Found at i:6871315 original size:40 final size:40
Alignment explanation
Indices: 6871207--6871332 Score: 153
Period size: 41 Copynumber: 3.1 Consensus size: 40
6871197 TATTTGCGGC
* **
6871207 GTTTATGGGAAAAACGCCGCTATTGTTTTACCTTTTACGAC
1 GTTTAT-GGAAAAACGCCGCTATTGCTTTACCTTTTACGGT
* *
6871248 GTTTATGAGAAAAACACCACTATTGCTTTACCTTTTACGGT
1 GTTTATG-GAAAAACGCCGCTATTGCTTTACCTTTTACGGT
* * * *
6871289 GTTTATGCAAAAACGCCGTTAATGCTTTACCTTTTGCGGT
1 GTTTATGGAAAAACGCCGCTATTGCTTTACCTTTTACGGT
6871329 GTTT
1 GTTT
6871333 TTCGGTTAGC
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
40 32 0.44
41 41 0.56
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (40 bp):
GTTTATGGAAAAACGCCGCTATTGCTTTACCTTTTACGGT
Found at i:6876179 original size:12 final size:12
Alignment explanation
Indices: 6876159--6876191 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
6876149 CATGAACAAG
6876159 CTCGTTTATTGA
1 CTCGTTTATTGA
*
6876171 CTTGTTTA-TGA
1 CTCGTTTATTGA
6876182 CTCGTTTATT
1 CTCGTTTATT
6876192 TATTAATGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.55
Consensus pattern (12 bp):
CTCGTTTATTGA
Found at i:6884665 original size:29 final size:30
Alignment explanation
Indices: 6884553--6884668 Score: 94
Period size: 29 Copynumber: 3.9 Consensus size: 30
6884543 TATGTGTAGG
* * *
6884553 TGTTTATATTTATCAGGTACTATGTACCGG
1 TGTTTATAGTTATCAAGTACTATGTACCGA
** *
6884583 TGACTATA-TTATCAAGTACTTTGTACCGA
1 TGTTTATAGTTATCAAGTACTATGTACCGA
** *
6884612 T-TTTCATAGTATATCAAACACTATGTGCCGA
1 TGTTT-ATAGT-TATCAAGTACTATGTACCGA
* *
6884643 TGTTTATA-TTATCAGGTAGTATGTAC
1 TGTTTATAGTTATCAAGTACTATGTAC
6884669 TGGTGGTGGA
Statistics
Matches: 66, Mismatches: 16, Indels: 9
0.73 0.18 0.10
Matches are distributed among these distances:
28 1 0.02
29 34 0.52
30 8 0.12
31 20 0.30
32 3 0.05
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (30 bp):
TGTTTATAGTTATCAAGTACTATGTACCGA
Found at i:6889519 original size:19 final size:19
Alignment explanation
Indices: 6889495--6889534 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
6889485 CTTTTCGTTT
6889495 GCTACTTTCATTAGTTCAG
1 GCTACTTTCATTAGTTCAG
*
6889514 GCTACTTTCTTTAGTTCAG
1 GCTACTTTCATTAGTTCAG
6889533 GC
1 GC
6889535 ACCATTCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.42
Consensus pattern (19 bp):
GCTACTTTCATTAGTTCAG
Found at i:6892942 original size:51 final size:51
Alignment explanation
Indices: 6892858--6893117 Score: 342
Period size: 51 Copynumber: 5.3 Consensus size: 51
6892848 ACTTCTGATC
*
6892858 AGTGACAAGTGATAAGT-AGTAGCTTCAGATACACTTATCTGATCAGTGA-A
1 AGTGACAAGTGATAAGTGA-TAGCTTCAGCTACACTTATCTGATCAGTGACA
*
6892908 TAGTGGCAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
1 -AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
* *
6892960 AGTGACAAGTGGTAAGTGGTAGCTTCAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
* *
6893011 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
* * *
6893062 AGT-----G-G-TAAGTGGTAGCTT-AGCTACACTTATCTGATTAGGGACA
1 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
*
6893105 AGTGATAAGTGAT
1 AGTGACAAGTGAT
6893118 TATACGTAAG
Statistics
Matches: 191, Mismatches: 9, Indels: 19
0.87 0.04 0.09
Matches are distributed among these distances:
43 26 0.14
44 13 0.07
45 1 0.01
46 1 0.01
48 1 0.01
49 1 0.01
50 1 0.01
51 145 0.76
52 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.29
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
Found at i:6893096 original size:43 final size:44
Alignment explanation
Indices: 6893011--6893115 Score: 176
Period size: 43 Copynumber: 2.4 Consensus size: 44
6893001 ATCAGTGACA
6893011 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
* *
6893055 AGTGACAAGTGGTAAGTGGTAGC-TTAGCTACACTTATCTGATT
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
*
6893098 AGGGACAAGTGATAAGTG
1 AGTGACAAGTGATAAGTG
6893116 ATTATACGTA
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
43 35 0.61
44 22 0.39
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (44 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
Found at i:6906118 original size:17 final size:17
Alignment explanation
Indices: 6906096--6906139 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
6906086 ATTAGAAAGT
6906096 AATAAAAAATTGTTTTC
1 AATAAAAAATTGTTTTC
* *
6906113 AATAAAATA-TGTTTTG
1 AATAAAAAATTGTTTTC
6906129 AACTAAAAAAT
1 AA-TAAAAAAT
6906140 ATTAAAAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.36
Consensus pattern (17 bp):
AATAAAAAATTGTTTTC
Found at i:6907451 original size:27 final size:29
Alignment explanation
Indices: 6907412--6907465 Score: 67
Period size: 27 Copynumber: 1.9 Consensus size: 29
6907402 AGACTTCTCT
*
6907412 TTTAATTAAATT-ATAAT-TTTTTTAAAA
1 TTTAATTAAATTAAAAATATTTTTTAAAA
* *
6907439 TTTATTTATATTAAAAATATTTTTTAA
1 TTTAATTAAATTAAAAATATTTTTTAA
6907466 TAGGTGGTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 10 0.45
28 4 0.18
29 8 0.36
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (29 bp):
TTTAATTAAATTAAAAATATTTTTTAAAA
Found at i:6907864 original size:29 final size:28
Alignment explanation
Indices: 6907832--6907889 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
6907822 AGCAAAGAGT
6907832 CTAAATTTCTAAA-AATAAAAATATAAAAA
1 CTAAA-TTCTAAATAATAAAAA-ATAAAAA
*
6907861 CTAAATTCTAAATTTATAAAAAATAAAAA
1 CTAAATTCTAAA-TAATAAAAAATAAAAA
6907890 GATTCATAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 7 0.27
29 12 0.46
30 7 0.27
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (28 bp):
CTAAATTCTAAATAATAAAAAATAAAAA
Found at i:6911518 original size:2 final size:2
Alignment explanation
Indices: 6911511--6911550 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
6911501 AATTCTTGTT
* *
6911511 TC TC TC TC TC TC TC TC TC TC TC TC CC TC TC TC TC GC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
6911551 CCTCCCTCCT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.53, G:0.03, T:0.45
Consensus pattern (2 bp):
TC
Found at i:6911669 original size:6 final size:6
Alignment explanation
Indices: 6911654--6911690 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
6911644 CAAGACCCCA
6911654 ACCA-C ACCAGC ACCAGC ACCAGC ACCAGC ACCAGC AC
1 ACCAGC ACCAGC ACCAGC ACCAGC ACCAGC ACCAGC AC
6911691 TATCCACCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.35, C:0.51, G:0.14, T:0.00
Consensus pattern (6 bp):
ACCAGC
Found at i:6916444 original size:26 final size:26
Alignment explanation
Indices: 6916415--6916467 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6916405 TTTAAATCAA
*
6916415 ACTTTTCAGAAAT-ACTTCTCAAAAGC
1 ACTTTTC-CAAATCACTTCTCAAAAGC
*
6916441 ACTTTTCCACATCACTTCTCAAAAGC
1 ACTTTTCCAAATCACTTCTCAAAAGC
6916467 A
1 A
6916468 ATGAAGAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.36, C:0.28, G:0.06, T:0.30
Consensus pattern (26 bp):
ACTTTTCCAAATCACTTCTCAAAAGC
Found at i:6919491 original size:202 final size:202
Alignment explanation
Indices: 6919136--6919549 Score: 693
Period size: 202 Copynumber: 2.0 Consensus size: 202
6919126 AGTGATGAAC
* *
6919136 TCAGGATTTAGATAAATCACACCATGAACATCACAAGTGAATTAATTCACAAATGGATTCAGAAT
1 TCAGTATTTAGATAAATCACACCATGAACATCACAAGTGAATTAATTCACAAACGGATTCAGAAT
*
6919201 TAATTCATTGTGAGTCCAATCCAATGTATCATTCTACCAATGAATACATCTATGTCTCTACTCGT
66 TAATTCATCGTGAGTCCAATCCAATGTATCATTCTACCAATGAATACATCTATGTCTCTACTCGT
* * *
6919266 GGAAACAACTGCTCTGGTAGCCAAGACTAGCCATCTCCCCAATTGGGTTTGTAAACGACATAATA
131 GGAAACAACTGCTCCGATAGCCAAGACTAGCCATCTCCCCAATTGGATTTGTAAACGACATAATA
6919331 ATTCTTA
196 ATTCTTA
*
6919338 TCAGTATTTAGATAAATCATACCATGAACATCACAAGTGAATTAATTCACAAACGGATTCAGAAT
1 TCAGTATTTAGATAAATCACACCATGAACATCACAAGTGAATTAATTCACAAACGGATTCAGAAT
*
6919403 TAATTCATCGTGAGTCCAGTCCAATGTATCATTCTACCAATGAATACATCTATGTCTCTACTCGT
66 TAATTCATCGTGAGTCCAATCCAATGTATCATTCTACCAATGAATACATCTATGTCTCTACTCGT
* * * * * *
6919468 TGAAACAACTGCTCCGATAGCCAAGACTAGTCATCTCCTCAATTGGATTTGTAGATGACATTATA
131 GGAAACAACTGCTCCGATAGCCAAGACTAGCCATCTCCCCAATTGGATTTGTAAACGACATAATA
6919533 ATTCTTA
196 ATTCTTA
*
6919540 TTAGTATTTA
1 TCAGTATTTA
6919550 AATCAAATGC
Statistics
Matches: 197, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
202 197 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (202 bp):
TCAGTATTTAGATAAATCACACCATGAACATCACAAGTGAATTAATTCACAAACGGATTCAGAAT
TAATTCATCGTGAGTCCAATCCAATGTATCATTCTACCAATGAATACATCTATGTCTCTACTCGT
GGAAACAACTGCTCCGATAGCCAAGACTAGCCATCTCCCCAATTGGATTTGTAAACGACATAATA
ATTCTTA
Found at i:6919749 original size:15 final size:15
Alignment explanation
Indices: 6919725--6919756 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6919715 TATACATGCA
*
6919725 AAATATAAAAGGCAT
1 AAATACAAAAGGCAT
6919740 AAATACAAAAGGCAT
1 AAATACAAAAGGCAT
6919755 AA
1 AA
6919757 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.62, C:0.09, G:0.12, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGGCAT
Found at i:6921372 original size:18 final size:19
Alignment explanation
Indices: 6921349--6921389 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
6921339 GCCACATTAG
6921349 AAAAAATAAA-AAAATTTT
1 AAAAAATAAAGAAAATTTT
*
6921367 AAAAAATAAAGAATATTTT
1 AAAAAATAAAGAAAATTTT
6921386 AAAA
1 AAAA
6921390 TTATTTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAAATAAAGAAAATTTT
Found at i:6921526 original size:25 final size:28
Alignment explanation
Indices: 6921498--6921553 Score: 73
Period size: 29 Copynumber: 2.1 Consensus size: 28
6921488 AAAAATTAAA
6921498 AAAAACTTA-TA-AAATTAA-AAAAAAT
1 AAAAACTTATTAGAAATTAATAAAAAAT
*
6921523 AAAATCTTATTAGAAATTAATTAAAAAAT
1 AAAAACTTATTAGAAATTAA-TAAAAAAT
6921552 AA
1 AA
6921554 TTTTTTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 8 0.31
26 2 0.08
27 7 0.27
29 9 0.35
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.29
Consensus pattern (28 bp):
AAAAACTTATTAGAAATTAATAAAAAAT
Found at i:6922970 original size:2 final size:2
Alignment explanation
Indices: 6922963--6922995 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6922953 TATTCTACCA
6922963 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
6922996 ACTTGCCCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:6923722 original size:5 final size:5
Alignment explanation
Indices: 6923712--6923740 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
6923702 AAAGCAGACA
6923712 ATTTG ATTTG ATTTG ATTTG ATTTG ATTT
1 ATTTG ATTTG ATTTG ATTTG ATTTG ATTT
6923741 CTATTGCTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.17, T:0.62
Consensus pattern (5 bp):
ATTTG
Found at i:6924961 original size:15 final size:15
Alignment explanation
Indices: 6924950--6924979 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6924940 GAGAAGAAGT
6924950 CAAAGAAGAAGAAAA
1 CAAAGAAGAAGAAAA
*
6924965 CCAAGAAGAAGAAAA
1 CAAAGAAGAAGAAAA
6924980 GGCGGAATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.10, G:0.20, T:0.00
Consensus pattern (15 bp):
CAAAGAAGAAGAAAA
Found at i:6926982 original size:21 final size:21
Alignment explanation
Indices: 6926938--6926982 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
6926928 GTAAAAATAT
*
6926938 ATTAATTTAATTTTTTTATTA
1 ATTAATTTAATTTTTTTATAA
*
6926959 ATTAATTTACTTATTTTTA-AA
1 ATTAATTTAATT-TTTTTATAA
6926980 ATT
1 ATT
6926983 TAAAAACAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
ATTAATTTAATTTTTTTATAA
Found at i:6936393 original size:131 final size:131
Alignment explanation
Indices: 6936159--6936817 Score: 746
Period size: 131 Copynumber: 5.0 Consensus size: 131
6936149 AGTGATTGGA
* * * * * *
6936159 AAATAAGCTAACACAAATGAGATTGTTCATGATATTAAATGGAATGAAATTAGGTTGTAATCTTA
1 AAATAAGCTAACTCAGATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCAATCTT-
* * * * * * *
6936224 AAAT-AGCGAACCTTAACGATATCAACTGCAATATTAAATTAGCAAGTTGGTTAGAATAGTGATA
65 AAATCAGCGAACCTTAACAATATCAACTGCGATATTAAATCAACAAGTTGTTTAGAGTAGCGATA
*
6936288 CT
130 TT
* * *
6936290 AAATAAGATAACTCAAATAAGATTGTTCATGATATTAAATTGAATGAACTTAGGTTGCAATCTTA
1 AAATAAGCTAACTCAGATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCAATCTTA
* * ** * * *** *
6936355 AATCAGTGAACCTTAACGATATCAGTTGCGATCTTAAATTAGTGAGTCGTTTAGAGTAGCGATAT
66 AATCAGCGAACCTTAACAATATCAACTGCGATATTAAATCAACAAGTTGTTTAGAGTAGCGATAT
6936420 T
131 T
* * * *
6936421 AAATCAGCTAACTCAGATAAGATTGTTCATGATATTAAATCAAATGAACTTATGTTGCGATCTTA
1 AAATAAGCTAACTCAGATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCAATCTTA
* *** * *** **
6936486 AATAAAAAAACCCTAACAATATCAACAATGATATTAAATCAACAAAATGTTTAGAGTAGCGATAT
66 AATCAGCGAACCTTAACAATATCAACTGCGATATTAAATCAACAAGTTGTTTAGAGTAGCGATAT
*
6936551 A
131 T
* * * * *
6936552 AAATTAGCTAACTTAGATAAGATTGTTCATGATATTAAATCAAATGAACTTATGTTGCGATCTTA
1 AAATAAGCTAACTCAGATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCAATCTTA
* * * *** * *
6936617 AATCAACAAACCCTAACAATATCAACAATGATATTAAATCAACGAA-ATGTTTAGAGTAGTGATA
66 AATCAGCGAACCTTAACAATATCAACTGCGATATTAAATCAAC-AAGTTGTTTAGAGTAGCGATA
6936681 TT
130 TT
* *
6936683 AAATTAGCTAACTTAGATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCAATCTTA
1 AAATAAGCTAACTCAGATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCAATCTTA
* * *
6936748 AATCAGCGAACCTTAACAATATCAGCTGCGATCTTAAATCAACAAGTTGTTTAGAATAGCGATAT
66 AATCAGCGAACCTTAACAATATCAACTGCGATATTAAATCAACAAGTTGTTTAGAGTAGCGATAT
6936813 T
131 T
6936814 AAAT
1 AAAT
6936818 CAAATTAACT
Statistics
Matches: 460, Mismatches: 65, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
130 6 0.01
131 452 0.98
132 2 0.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (131 bp):
AAATAAGCTAACTCAGATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCAATCTTA
AATCAGCGAACCTTAACAATATCAACTGCGATATTAAATCAACAAGTTGTTTAGAGTAGCGATAT
T
Found at i:6936517 original size:64 final size:64
Alignment explanation
Indices: 6936449--6936658 Score: 192
Period size: 64 Copynumber: 3.2 Consensus size: 64
6936439 AAGATTGTTC
*
6936449 ATGATATTAAATCAAATGAACTTATGTTGCGATCTTAAATAAAAAAACCCTAACAATATCAACA
1 ATGATATTAAATCAAATGAACTTATGTTGCGATCTTAAATAAACAAACCCTAACAATATCAACA
* * * * * * * * * * * *
6936513 ATGATATTAAATCAACA-AAATGTTTAGAGTAGCGATATAAAATTAGCTAA-CTTAGATAAGATT
1 ATGATATTAAATCAA-ATGAA--CTTA-TGTTGCGATCTTAAATAAACAAACCCTA-ACAATA-T
***
6936576 GTTC-
60 CAACA
*
6936580 ATGATATTAAATCAAATGAACTTATGTTGCGATCTTAAATCAACAAACCCTAACAATATCAACA
1 ATGATATTAAATCAAATGAACTTATGTTGCGATCTTAAATAAACAAACCCTAACAATATCAACA
6936644 ATGATATTAAATCAA
1 ATGATATTAAATCAA
6936659 CGAAATGTTT
Statistics
Matches: 106, Mismatches: 31, Indels: 18
0.68 0.20 0.12
Matches are distributed among these distances:
63 2 0.02
64 52 0.49
65 7 0.07
66 7 0.07
67 36 0.34
68 2 0.02
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.30
Consensus pattern (64 bp):
ATGATATTAAATCAAATGAACTTATGTTGCGATCTTAAATAAACAAACCCTAACAATATCAACA
Found at i:6936589 original size:67 final size:67
Alignment explanation
Indices: 6936513--6936723 Score: 200
Period size: 67 Copynumber: 3.2 Consensus size: 67
6936503 AATATCAACA
*
6936513 ATGATATTAAATCAACAAAATGTTTAGAGTAGCGATATAAAATTAGCTAACTTAGATAAGATTGT
1 ATGATATTAAATCAACAAAATGTTTAGAGTAGCGATATTAAATTAGCTAACTTAGATAAGATTGT
6936578 TC
66 TC
* * * * * * * * * * *
6936580 ATGATATTAAATCAA-ATGAA--CTTA-TGTTGCGATCTTAAATCAACAAACCCTA-ACAATA-T
1 ATGATATTAAATCAACA-AAATGTTTAGAGTAGCGATATTAAATTAGCTAA-CTTAGATAAGATT
***
6936639 CAAC
64 GTTC
* *
6936643 AATGATATTAAATCAACGAAATGTTTAGAGTAGTGATATTAAATTAGCTAACTTAGATAAGATTG
1 -ATGATATTAAATCAACAAAATGTTTAGAGTAGCGATATTAAATTAGCTAACTTAGATAAGATTG
6936708 TTC
65 TTC
6936711 ATGATATTAAATC
1 ATGATATTAAATC
6936724 GAATGAACTT
Statistics
Matches: 104, Mismatches: 31, Indels: 18
0.68 0.20 0.12
Matches are distributed among these distances:
63 2 0.02
64 37 0.36
65 6 0.06
66 7 0.07
67 50 0.48
68 2 0.02
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (67 bp):
ATGATATTAAATCAACAAAATGTTTAGAGTAGCGATATTAAATTAGCTAACTTAGATAAGATTGT
TC
Found at i:6936821 original size:226 final size:226
Alignment explanation
Indices: 6936582--6937014 Score: 614
Period size: 226 Copynumber: 1.9 Consensus size: 226
6936572 GATTGTTCAT
*
6936582 GATATTAAATCAAATGAACTTATGTTGCGATCTTAAATCAACAAACCCTAACAATATCAACAATG
1 GATATTAAATCAAATGAACTTATGTTGCGATCTTAAATCAACAAACCCTAACAATATCAACAACG
* * * *
6936647 ATATTAAATCAACGAAATGTTTAGAGTAGTGATATTAAATTAGCTAACTTAGATAAGATTGTTCA
66 ATATTAAATCAACGAAATGTTTAGAGTAGCGATATTAAATCAACTAACTCAGATAAGATTGTTCA
* *
6936712 TGATATTAAATCGAATGAACTTAGGTTGCAATCTTAAATCAGCGAACCTTAACAATATCAGCTGC
131 TGATATTAAATCGAATGAACTTAGGTTGCAATCTTAAATCAACAAACCTTAACAATATCAGCTGC
*
6936777 GATCTTAAATCAACAAGTTGTTTAGAATAGC
196 GATATTAAATCAACAAGTTGTTTAGAATAGC
* * * * * * * * * **
6936808 GATATTAAATCAAATTAACTTATGTTGTGATCTTAAATCAGCGAATCTTAACGATATTAGCTGCG
1 GATATTAAATCAAATGAACTTATGTTGCGATCTTAAATCAACAAACCCTAACAATATCAACAACG
* **
6936873 ATATTAAATCAGCGAGTTGTTTAGAGTAGCGATATTAAATCAACTAACTCAGATAAGATTGTTCA
66 ATATTAAATCAACGAAATGTTTAGAGTAGCGATATTAAATCAACTAACTCAGATAAGATTGTTCA
* * * ** *
6936938 TGATATTAGATTGAATGAACTTAGGTTGTAATCTTAAATCAACAAACCTTAATGATATCAGCTGT
131 TGATATTAAATCGAATGAACTTAGGTTGCAATCTTAAATCAACAAACCTTAACAATATCAGCTGC
6937003 GATATTAAATCA
196 GATATTAAATCA
6937015 GCAAACCTTA
Statistics
Matches: 179, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
226 179 1.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.33
Consensus pattern (226 bp):
GATATTAAATCAAATGAACTTATGTTGCGATCTTAAATCAACAAACCCTAACAATATCAACAACG
ATATTAAATCAACGAAATGTTTAGAGTAGCGATATTAAATCAACTAACTCAGATAAGATTGTTCA
TGATATTAAATCGAATGAACTTAGGTTGCAATCTTAAATCAACAAACCTTAACAATATCAGCTGC
GATATTAAATCAACAAGTTGTTTAGAATAGC
Found at i:6936841 original size:95 final size:95
Alignment explanation
Indices: 6936713--6936915 Score: 298
Period size: 95 Copynumber: 2.1 Consensus size: 95
6936703 GATTGTTCAT
*
6936713 GATATTAAATCGAATGAACTTAGGTTGCAATCTTAAATCAGCGAACCTTAACAATATCAGCTGCG
1 GATATTAAATCAAATGAACTTAGGTTGCAATCTTAAATCAGCGAACCTTAACAATATCAGCTGCG
*
6936778 ATCTTAAATCAACAAGTTGTTTAGAATAGC
66 ATATTAAATCAACAAGTTGTTTAGAATAGC
* * ** * * *
6936808 GATATTAAATCAAATTAACTTATGTTGTGATCTTAAATCAGCGAATCTTAACGATATTAGCTGCG
1 GATATTAAATCAAATGAACTTAGGTTGCAATCTTAAATCAGCGAACCTTAACAATATCAGCTGCG
* * *
6936873 ATATTAAATCAGCGAGTTGTTTAGAGTAGC
66 ATATTAAATCAACAAGTTGTTTAGAATAGC
6936903 GATATTAAATCAA
1 GATATTAAATCAA
6936916 CTAACTCAGA
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
95 96 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.32
Consensus pattern (95 bp):
GATATTAAATCAAATGAACTTAGGTTGCAATCTTAAATCAGCGAACCTTAACAATATCAGCTGCG
ATATTAAATCAACAAGTTGTTTAGAATAGC
Found at i:6937051 original size:36 final size:36
Alignment explanation
Indices: 6936971--6937052 Score: 137
Period size: 36 Copynumber: 2.3 Consensus size: 36
6936961 GGTTGTAATC
* * *
6936971 TTAAATCAACAAACCTTAATGATATCAGCTGTGATA
1 TTAAATCAGCAAACCTTAACGATATCAACTGTGATA
6937007 TTAAATCAGCAAACCTTAACGATATCAACTGTGATA
1 TTAAATCAGCAAACCTTAACGATATCAACTGTGATA
6937043 TTAAATCAGC
1 TTAAATCAGC
6937053 TAGCTATTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.29
Consensus pattern (36 bp):
TTAAATCAGCAAACCTTAACGATATCAACTGTGATA
Found at i:6943879 original size:21 final size:21
Alignment explanation
Indices: 6943851--6943910 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 21
6943841 GCTTCACCTT
6943851 AACCCTTATGAGTTTCTGCTC
1 AACCCTTATGAGTTTCTGCTC
* * * * *
6943872 AGCTCTTATGAGCTTCCGTTC
1 AACCCTTATGAGTTTCTGCTC
*
6943893 AACCCTTATCAGTTTCTG
1 AACCCTTATGAGTTTCTG
6943911 TTTAGCACTT
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.18, C:0.28, G:0.15, T:0.38
Consensus pattern (21 bp):
AACCCTTATGAGTTTCTGCTC
Found at i:6943922 original size:42 final size:42
Alignment explanation
Indices: 6943838--6943938 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
6943828 TCAACTCTTT
* * *
6943838 TGAGCTTCACCTT-AACCCTTATGAGTTTCTGCTCAGCTCTTA
1 TGAGCTTC-CGTTCAACCCTTATCAGTTTCTGCTCAGCACTTA
* *
6943880 TGAGCTTCCGTTCAACCCTTATCAGTTTCTGTTTAGCACTTA
1 TGAGCTTCCGTTCAACCCTTATCAGTTTCTGCTCAGCACTTA
* * *
6943922 TGTGCTTCTGTGCAACC
1 TGAGCTTCCGTTCAACC
6943939 TCTGCAGTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
41 3 0.06
42 47 0.94
ACGTcount: A:0.18, C:0.28, G:0.16, T:0.39
Consensus pattern (42 bp):
TGAGCTTCCGTTCAACCCTTATCAGTTTCTGCTCAGCACTTA
Found at i:6946670 original size:50 final size:51
Alignment explanation
Indices: 6946607--6946739 Score: 187
Period size: 50 Copynumber: 2.6 Consensus size: 51
6946597 TATCATTCGA
* * * * *
6946607 TACACGTACTAGCCTTCACATAGTACTACACACGTGATCAAA-CTTTCCAG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTAACCAAAGCCTTCCAG
* *
6946657 TTCACGTAGTAGCCTACACATAGTACTACACACGTAACCAAAGCCTTCCGG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTAACCAAAGCCTTCCAG
*
6946708 TACACATAGTAGCCTACACATAGTACTACACA
1 TACACGTAGTAGCCTACACATAGTACTACACA
6946740 TATGACCATT
Statistics
Matches: 73, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
50 37 0.51
51 36 0.49
ACGTcount: A:0.34, C:0.30, G:0.13, T:0.23
Consensus pattern (51 bp):
TACACGTAGTAGCCTACACATAGTACTACACACGTAACCAAAGCCTTCCAG
Found at i:6946732 original size:51 final size:50
Alignment explanation
Indices: 6946607--6946793 Score: 187
Period size: 51 Copynumber: 3.7 Consensus size: 50
6946597 TATCATTCGA
* * * * *
6946607 TACACGTACTAGCCTTCACATAGTACTACACACGTGATCAAACTTTCCAG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTAACCAAACCTTCCAG
* *
6946657 TTCACGTAGTAGCCTACACATAGTACTACACACGTAACCAAAGCCTTCCGG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTAACCAAA-CCTTCCAG
* ** * * * **
6946708 TACACATAGTAGCCTACACATAGTACTACACATATGACCATTATCTATTGA-
1 TACACGTAGTAGCCTACACATAGTACTACACACGTAACCA-AACCT-TCCAG
* *
6946759 TACACGTAGTAGCCTGCACTTAGTACTACACACGT
1 TACACGTAGTAGCCTACACATAGTACTACACACGT
6946794 GTTTATAGGC
Statistics
Matches: 112, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
50 37 0.33
51 73 0.65
52 2 0.02
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (50 bp):
TACACGTAGTAGCCTACACATAGTACTACACACGTAACCAAACCTTCCAG
Found at i:6946738 original size:12 final size:13
Alignment explanation
Indices: 6946708--6946741 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
6946698 AGCCTTCCGG
6946708 TACACATAGTAGCC
1 TACACATAGTA-CC
6946722 TACACATAGTA-C
1 TACACATAGTACC
6946734 TACACATA
1 TACACATA
6946742 TGACCATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.45
14 11 0.55
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (13 bp):
TACACATAGTACC
Found at i:6953186 original size:22 final size:23
Alignment explanation
Indices: 6953157--6953213 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 23
6953147 TGCACTAATG
6953157 AACAGAGAGCACTAAA-GTGCTA
1 AACAGAGAGCACTAAATGTGCTA
*
6953179 TACAGAGAGCAC-AAATGTGCTA
1 AACAGAGAGCACTAAATGTGCTA
*
6953201 AACGGAGAGCACT
1 AACAGAGAGCACT
6953214 GACTTGCTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.10
22 27 0.90
ACGTcount: A:0.42, C:0.19, G:0.25, T:0.14
Consensus pattern (23 bp):
AACAGAGAGCACTAAATGTGCTA
Found at i:6954136 original size:26 final size:27
Alignment explanation
Indices: 6954091--6954141 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
6954081 AAATCCCAAA
*
6954091 TTTTCTTTCTTTCCTTCCCT-TTTTCT
1 TTTTCTTTCTTTCCTCCCCTATTTTCT
6954117 TTTTCTTTCATTT-CTCCCCTATTTT
1 TTTTCTTTC-TTTCCTCCCCTATTTT
6954142 TGTTTTGCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.04, C:0.29, G:0.00, T:0.67
Consensus pattern (27 bp):
TTTTCTTTCTTTCCTCCCCTATTTTCT
Found at i:6954204 original size:5 final size:5
Alignment explanation
Indices: 6954194--6954226 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
6954184 TTCTTTTATT
6954194 ATATA ATATA ATATA ATAT- ATATA ATAT- ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
6954227 CTTAACTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 8 0.31
5 18 0.69
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:6957584 original size:22 final size:22
Alignment explanation
Indices: 6957553--6957618 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
6957543 TGCACTAATG
*
6957553 AATAGAGAGCACTAAAGTGCTA
1 AATAGGGAGCACTAAAGTGCTA
*
6957575 TATAGGGAGCAC-AAATGTGCTA
1 AATAGGGAGCACTAAA-GTGCTA
*
6957597 AAT-GGAGAGCACTAACGTGCTA
1 AATAGG-GAGCACTAAAGTGCTA
6957619 GTAATCAGAG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
21 5 0.14
22 30 0.81
23 2 0.05
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.20
Consensus pattern (22 bp):
AATAGGGAGCACTAAAGTGCTA
Found at i:6958613 original size:7 final size:7
Alignment explanation
Indices: 6958603--6958628 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
6958593 ATATAATATA
6958603 ATATAAT
1 ATATAAT
6958610 ATATAAT
1 ATATAAT
6958617 ATATAAT
1 ATATAAT
6958624 ATATA
1 ATATA
6958629 TACTTAACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
ATATAAT
Found at i:6960520 original size:42 final size:42
Alignment explanation
Indices: 6960438--6960546 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
6960428 ACCCTATTCA
* *
6960438 GTTTCCGTTCAGCTCTTTTGAGC-TTCAGCTTAACCATTATGG
1 GTTTCCGTTAAGCTCTTATGAGCTTTCA-CTTAACCATTATGG
*
6960480 GTTTCCGTTAAGCTCTTATGAGCTTTCA-TTCAACCCTTATGG
1 GTTTCCGTTAAGCTCTTATGAGCTTTCACTT-AACCATTATGG
* * * *
6960522 GTTTCTGTTTAGCACTTATGTGCTT
1 GTTTCCGTTAAGCTCTTATGAGCTT
6960547 CTGTACAACC
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
41 2 0.03
42 52 0.90
43 4 0.07
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.43
Consensus pattern (42 bp):
GTTTCCGTTAAGCTCTTATGAGCTTTCACTTAACCATTATGG
Found at i:6967035 original size:22 final size:22
Alignment explanation
Indices: 6967010--6967055 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
6967000 ATAATAATGT
6967010 AAGAGAATAATATGAAGACATA
1 AAGAGAATAATATGAAGACATA
*
6967032 AAGAGAATAATATGAATACATA
1 AAGAGAATAATATGAAGACATA
6967054 AA
1 AA
6967056 TCTGCAGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.61, C:0.04, G:0.15, T:0.20
Consensus pattern (22 bp):
AAGAGAATAATATGAAGACATA
Found at i:6967262 original size:69 final size:69
Alignment explanation
Indices: 6967151--6967289 Score: 278
Period size: 69 Copynumber: 2.0 Consensus size: 69
6967141 TTTGATATTT
6967151 GGGGATGTCATTTAAGCGAGGGTAAATTGTCCCAATTGGTCACTCAACTTTTAAGTCGTTTTCAT
1 GGGGATGTCATTTAAGCGAGGGTAAATTGTCCCAATTGGTCACTCAACTTTTAAGTCGTTTTCAT
6967216 TTTA
66 TTTA
6967220 GGGGATGTCATTTAAGCGAGGGTAAATTGTCCCAATTGGTCACTCAACTTTTAAGTCGTTTTCAT
1 GGGGATGTCATTTAAGCGAGGGTAAATTGTCCCAATTGGTCACTCAACTTTTAAGTCGTTTTCAT
6967285 TTTA
66 TTTA
6967289 G
1 G
6967290 TTATCCAAGC
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.37
Consensus pattern (69 bp):
GGGGATGTCATTTAAGCGAGGGTAAATTGTCCCAATTGGTCACTCAACTTTTAAGTCGTTTTCAT
TTTA
Found at i:6967492 original size:55 final size:57
Alignment explanation
Indices: 6967425--6967540 Score: 173
Period size: 56 Copynumber: 2.1 Consensus size: 57
6967415 TTACACTTTC
*
6967425 ATTTCAGTCAT-CCAAGTGTTAGGTCACTTTCATTTTAATCATTAAAATCTCTTC-T
1 ATTTCAGTCATCCCAAGTGTTAGGTCACTTTCATTTTAATCATCAAAATCTCTTCTT
* * * *
6967480 ATTTCGGTCATCCCAAGTTTTAGGTCACTTTCGTTTTGATCATCAAAATCTCTTCTT
1 ATTTCAGTCATCCCAAGTGTTAGGTCACTTTCATTTTAATCATCAAAATCTCTTCTT
6967537 ATTT
1 ATTT
6967541 TTTTTAGTAA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
55 10 0.19
56 39 0.72
57 5 0.09
ACGTcount: A:0.24, C:0.21, G:0.10, T:0.45
Consensus pattern (57 bp):
ATTTCAGTCATCCCAAGTGTTAGGTCACTTTCATTTTAATCATCAAAATCTCTTCTT
Found at i:6970103 original size:30 final size:33
Alignment explanation
Indices: 6970045--6970106 Score: 85
Period size: 30 Copynumber: 2.0 Consensus size: 33
6970035 TCCTGGCGGA
*
6970045 TATCCACCGGCTGGAGCGTACCCCCCTCAAGGC
1 TATCCACCAGCTGGAGCGTACCCCCCTCAAGGC
*
6970078 TATCCACCAGCT-G-GC-TACCCTCCTCAAGG
1 TATCCACCAGCTGGAGCGTACCCCCCTCAAGG
6970107 AGGATACCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 13 0.48
31 2 0.07
32 1 0.04
33 11 0.41
ACGTcount: A:0.19, C:0.42, G:0.21, T:0.18
Consensus pattern (33 bp):
TATCCACCAGCTGGAGCGTACCCCCCTCAAGGC
Found at i:6970294 original size:9 final size:9
Alignment explanation
Indices: 6970280--6970318 Score: 69
Period size: 9 Copynumber: 4.3 Consensus size: 9
6970270 GGCATGGGAG
6970280 TGGTGCTCA
1 TGGTGCTCA
6970289 TGGTGCTCA
1 TGGTGCTCA
*
6970298 TGGTGCTTA
1 TGGTGCTCA
6970307 TGGTGCTCA
1 TGGTGCTCA
6970316 TGG
1 TGG
6970319 GTTTGGTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.10, C:0.18, G:0.36, T:0.36
Consensus pattern (9 bp):
TGGTGCTCA
Found at i:6970395 original size:21 final size:24
Alignment explanation
Indices: 6970337--6970396 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
6970327 ATGGTCATCA
*
6970337 TGGGAAGTTCAAACATCATGGTGG
1 TGGGAAGTTCAAGCATCATGGTGG
*
6970361 TGGGAAGTTTAAGCATCAT-G-GG
1 TGGGAAGTTCAAGCATCATGGTGG
*
6970383 -GGGAAATTCAAGCA
1 TGGGAAGTTCAAGCA
6970397 CGGGAAGCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 12 0.38
22 2 0.06
23 1 0.03
24 17 0.53
ACGTcount: A:0.32, C:0.12, G:0.33, T:0.23
Consensus pattern (24 bp):
TGGGAAGTTCAAGCATCATGGTGG
Found at i:6970412 original size:24 final size:24
Alignment explanation
Indices: 6970383--6970432 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
6970373 GCATCATGGG
*
6970383 GGGAAATTCAAGCACGGGAAGCAT
1 GGGAAATTCAAGCACGGAAAGCAT
*
6970407 GGGAAATTTAAGCACGGAAAGCAT
1 GGGAAATTCAAGCACGGAAAGCAT
6970431 GG
1 GG
6970433 AGGCGGCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.14, G:0.34, T:0.14
Consensus pattern (24 bp):
GGGAAATTCAAGCACGGAAAGCAT
Found at i:6971233 original size:69 final size:69
Alignment explanation
Indices: 6971148--6971289 Score: 248
Period size: 69 Copynumber: 2.1 Consensus size: 69
6971138 ACCTGATTAT
* * *
6971148 TAATCAAGTTGAATCTAAATTTAAGCACTCTTAACCCTTCTATTATAATATAATATCTTTTTGTA
1 TAATCAAGTTGAATCTAAATTTAAACACTCCTAACCCTTCAATTATAATATAATATCTTTTTGTA
6971213 AAAC
66 AAAC
*
6971217 TAATCAAGTTGAATCTAAATTTAAACACTCCTAACCCTTCAATTATAATATGATATCTTTTTGTA
1 TAATCAAGTTGAATCTAAATTTAAACACTCCTAACCCTTCAATTATAATATAATATCTTTTTGTA
6971282 AAAC
66 AAAC
6971286 TAAT
1 TAAT
6971290 GCATTGGATG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39
Consensus pattern (69 bp):
TAATCAAGTTGAATCTAAATTTAAACACTCCTAACCCTTCAATTATAATATAATATCTTTTTGTA
AAAC
Found at i:6971687 original size:22 final size:21
Alignment explanation
Indices: 6971644--6971687 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
6971634 CATGTATTAC
*
6971644 AATAGTTAGATATAAAATATG
1 AATAGTTAGATATAAAAGATG
6971665 AATAGTTAG-TACTGAAAAGATG
1 AATAGTTAGATA-T-AAAAGATG
6971687 A
1 A
6971688 GTAAATATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 2 0.10
21 10 0.50
22 8 0.40
ACGTcount: A:0.50, C:0.02, G:0.18, T:0.30
Consensus pattern (21 bp):
AATAGTTAGATATAAAAGATG
Found at i:6974024 original size:181 final size:181
Alignment explanation
Indices: 6973720--6974270 Score: 1066
Period size: 181 Copynumber: 3.0 Consensus size: 181
6973710 CACATATCTC
6973720 ATATAATGTTAAAGAAACAAGTTTAGAAAATACAAAATGGAGACAATAATGTGTCTCAGTGCAGC
1 ATATAATGTTAAAGAAACAAGTTTAGAAAATACAAAATGGAGACAATAATGTGTCTCAGTGCAGC
6973785 ATGTTTTCCACACCTTTACTTAGGAATACCACAACTTCGATATTAAGTTATTATGAACACCACAG
66 ATGTTTTCCACACCTTTACTTAGGAATACCACAACTTCGATATTAAGTTATTATGAACACCACAG
6973850 AGTTGAAAAGTCTATATCAGCTCTTCAGCACACCCAAGTAGCCTAAAAGGG
131 AGTTGAAAAGTCTATATCAGCTCTTCAGCACACCCAAGTAGCCTAAAAGGG
6973901 ATATAATGTTAAAGAAACAAGTTTAGAAAATACAAAATGGAGACAATAATGTGTCTCAGTGCAGC
1 ATATAATGTTAAAGAAACAAGTTTAGAAAATACAAAATGGAGACAATAATGTGTCTCAGTGCAGC
6973966 ATGTTTTCCACACCTTTACTTAGGAATACCACAACTTCGATATTAAGTTATTATGAACACCACAG
66 ATGTTTTCCACACCTTTACTTAGGAATACCACAACTTCGATATTAAGTTATTATGAACACCACAG
6974031 AGTTGAAAAGTCTATATCAGCTCTTCAGCACACCCAAGTAGCCTAAAAGGG
131 AGTTGAAAAGTCTATATCAGCTCTTCAGCACACCCAAGTAGCCTAAAAGGG
* *
6974082 ATATAATGTTAAAGAAACAAGTTTAGCAAATACAAAATGGAGACAATAATGTGTCTCAGTCCAGC
1 ATATAATGTTAAAGAAACAAGTTTAGAAAATACAAAATGGAGACAATAATGTGTCTCAGTGCAGC
* *
6974147 ATGTTTTCCACACCTTTACTTAGGAATACCACAACTTGGATATTCAGTTATTATGAACACCACAG
66 ATGTTTTCCACACCTTTACTTAGGAATACCACAACTTCGATATTAAGTTATTATGAACACCACAG
6974212 AGTTGAAAAGTCTATATCAGCTCTTCAGCACACCCAAGTAGCCTAAAAGGG
131 AGTTGAAAAGTCTATATCAGCTCTTCAGCACACCCAAGTAGCCTAAAAGGG
6974263 ATATAATG
1 ATATAATG
6974271 GAACACAAAT
Statistics
Matches: 366, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
181 366 1.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (181 bp):
ATATAATGTTAAAGAAACAAGTTTAGAAAATACAAAATGGAGACAATAATGTGTCTCAGTGCAGC
ATGTTTTCCACACCTTTACTTAGGAATACCACAACTTCGATATTAAGTTATTATGAACACCACAG
AGTTGAAAAGTCTATATCAGCTCTTCAGCACACCCAAGTAGCCTAAAAGGG
Done.