Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 25 of 187
Found at i:7287703 original size:27 final size:27
Alignment explanation
Indices: 7287545--7287687 Score: 268
Period size: 27 Copynumber: 5.3 Consensus size: 27
7287535 TTATGACATT
7287545 TAAATTAAATATCTTACATAACTTACA
1 TAAATTAAATATCTTACATAACTTACA
7287572 TAAATTAAATATCTTACATAACTTACA
1 TAAATTAAATATCTTACATAACTTACA
*
7287599 TAAATTAAATAACTTACATAACTTACA
1 TAAATTAAATATCTTACATAACTTACA
*
7287626 TAACTTAAATATCTTACATAACTTACA
1 TAAATTAAATATCTTACATAACTTACA
7287653 TAAATTAAATATCTTACATAACTTACA
1 TAAATTAAATATCTTACATAACTTACA
7287680 TAAATTAA
1 TAAATTAA
7287688 GTAAATTAAA
Statistics
Matches: 112, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (27 bp):
TAAATTAAATATCTTACATAACTTACA
Found at i:7293211 original size:21 final size:21
Alignment explanation
Indices: 7293186--7293274 Score: 115
Period size: 21 Copynumber: 4.2 Consensus size: 21
7293176 CAGCAACTTA
**
7293186 AAGCAGAGGCGGCAGCGAGAG
1 AAGCAGAGGCCACAGCGAGAG
* * *
7293207 AAGCAGCGGCTACAACGAGAG
1 AAGCAGAGGCCACAGCGAGAG
* *
7293228 AAGCAGAGGCCGCAGCAAGAG
1 AAGCAGAGGCCACAGCGAGAG
7293249 AAGCAGAGGCCACAGCGAGAG
1 AAGCAGAGGCCACAGCGAGAG
7293270 AAGCA
1 AAGCA
7293275 ACGAGAGAAG
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 57 1.00
ACGTcount: A:0.38, C:0.22, G:0.38, T:0.01
Consensus pattern (21 bp):
AAGCAGAGGCCACAGCGAGAG
Found at i:7293249 original size:42 final size:42
Alignment explanation
Indices: 7293186--7293274 Score: 133
Period size: 42 Copynumber: 2.1 Consensus size: 42
7293176 CAGCAACTTA
* * * *
7293186 AAGCAGAGGCGGCAGCGAGAGAAGCAGCGGCTACAACGAGAG
1 AAGCAGAGGCCGCAGCAAGAGAAGCAGAGGCCACAACGAGAG
*
7293228 AAGCAGAGGCCGCAGCAAGAGAAGCAGAGGCCACAGCGAGAG
1 AAGCAGAGGCCGCAGCAAGAGAAGCAGAGGCCACAACGAGAG
7293270 AAGCA
1 AAGCA
7293275 ACGAGAGAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.38, C:0.22, G:0.38, T:0.01
Consensus pattern (42 bp):
AAGCAGAGGCCGCAGCAAGAGAAGCAGAGGCCACAACGAGAG
Found at i:7293282 original size:33 final size:33
Alignment explanation
Indices: 7293245--7293320 Score: 116
Period size: 33 Copynumber: 2.3 Consensus size: 33
7293235 GGCCGCAGCA
7293245 AGAGAAGCAGAGGCCACAGCGAGAGAAGCAACG
1 AGAGAAGCAGAGGCCACAGCGAGAGAAGCAACG
*** *
7293278 AGAGAAGCAGAGGTTGCAGCGAGAGAAGCAGCG
1 AGAGAAGCAGAGGCCACAGCGAGAGAAGCAACG
7293311 AGAGAAGCAG
1 AGAGAAGCAG
7293321 CAATAGAAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.41, C:0.17, G:0.39, T:0.03
Consensus pattern (33 bp):
AGAGAAGCAGAGGCCACAGCGAGAGAAGCAACG
Found at i:7293320 original size:12 final size:12
Alignment explanation
Indices: 7293261--7293321 Score: 74
Period size: 12 Copynumber: 5.3 Consensus size: 12
7293251 GCAGAGGCCA
7293261 CAGCGAGAGAAG
1 CAGCGAGAGAAG
*
7293273 CAACGAGAGAAG
1 CAGCGAGAGAAG
**
7293285 CA--GAG-GTTG
1 CAGCGAGAGAAG
7293294 CAGCGAGAGAAG
1 CAGCGAGAGAAG
7293306 CAGCGAGAGAAG
1 CAGCGAGAGAAG
7293318 CAGC
1 CAGC
7293322 AATAGAAGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
9 4 0.10
10 3 0.07
11 3 0.07
12 31 0.76
ACGTcount: A:0.39, C:0.18, G:0.39, T:0.03
Consensus pattern (12 bp):
CAGCGAGAGAAG
Found at i:7293891 original size:42 final size:42
Alignment explanation
Indices: 7293753--7294085 Score: 376
Period size: 42 Copynumber: 7.9 Consensus size: 42
7293743 TTTGTGAAAT
*
7293753 AAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCATTTTTT--A
1 AAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTTTCCA
* * * * *
7293793 ATTAGCCCCGCTATAGAACATTA-CTTTTAGAGGCGCTTTCTTCCA
1 A--AGCGCCGCTAAAGAACATGATC-TTTAGCGGCG-TTTTTTCCA
*
7293838 AAGCGTCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCA
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCA
* * *
7293880 AAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTCCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCA
*
7293922 AAGCGCCGCTAAAGAACATGATCTTTAGCAGCGGTTTTTT--A
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGC-GTTTTTTCCA
* *
7293963 TAAGCGCCGCTAAAGAACATGATCTTTAGGGGCGTTTCTTTCTA
1 -AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTCCA
* * * *
7294007 AA-CGCCGCTAAAGAGCATGGTCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCA
7294048 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
7294086 GTATGTAAGC
Statistics
Matches: 251, Mismatches: 29, Indels: 24
0.83 0.10 0.08
Matches are distributed among these distances:
40 1 0.00
41 10 0.04
42 197 0.78
43 39 0.16
44 2 0.01
45 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCA
Found at i:7294017 original size:126 final size:127
Alignment explanation
Indices: 7293838--7294105 Score: 416
Period size: 126 Copynumber: 2.1 Consensus size: 127
7293828 CTTTCTTCCA
* * *
7293838 AAGCGTCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCAAAGCGCCGCTAAAGATCATGTTC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCAAAGCGCCGCTAAAGAGCATGGTC
7293903 TTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGATCTTTAGCAGCGGTTTTT-TA-T
66 TTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGATCTTTAGCAGC-GTTTTTGTAGT
* *
7293964 AAGCGCCGCTAAAGAACATGATCTTTAGGGGCGTTTCTTTCTAAA-CGCCGCTAAAGAGCATGGT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTCCAAAGCGCCGCTAAAGAGCATGGT
* *
7294028 CTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTGTATGT
65 CTTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGATCTTTAGCAGCGTTTTTGTA-GT
*
7294092 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
7294106 TTAGTGACGT
Statistics
Matches: 130, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
125 6 0.05
126 103 0.79
127 7 0.05
128 14 0.11
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (127 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCAAAGCGCCGCTAAAGAGCATGGTC
TTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGATCTTTAGCAGCGTTTTTGTAGT
Found at i:7297845 original size:68 final size:68
Alignment explanation
Indices: 7297736--7297874 Score: 269
Period size: 68 Copynumber: 2.0 Consensus size: 68
7297726 GTGATCAGCC
*
7297736 ACTTGATTTTTCGTTCATTTTCTATCCAAAATTTTCAAATCAAACTCATGTAGCAAGAGTATCCA
1 ACTTGATTTTTAGTTCATTTTCTATCCAAAATTTTCAAATCAAACTCATGTAGCAAGAGTATCCA
7297801 CCA
66 CCA
7297804 ACTTGATTTTTAGTTCATTTTCTATCCAAAATTTTCAAATCAAACTCATGTAGCAAGAGTATCCA
1 ACTTGATTTTTAGTTCATTTTCTATCCAAAATTTTCAAATCAAACTCATGTAGCAAGAGTATCCA
7297869 CCA
66 CCA
7297872 ACT
1 ACT
7297875 CAATTTTGAC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 70 1.00
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.37
Consensus pattern (68 bp):
ACTTGATTTTTAGTTCATTTTCTATCCAAAATTTTCAAATCAAACTCATGTAGCAAGAGTATCCA
CCA
Found at i:7300369 original size:62 final size:61
Alignment explanation
Indices: 7300249--7300371 Score: 174
Period size: 62 Copynumber: 2.0 Consensus size: 61
7300239 TTGCTATAGC
7300249 ATTTCTATTAGCAAAATGATCTGATTCTACTGCAACAATATTCTATATAGCCTTTCCAGTT
1 ATTTCTATTAGCAAAATGATCTGATTCTACTGCAACAATATTCTATATAGCCTTTCCAGTT
* * ** * * *
7300310 ATTTCTATTAGCAAATTGATCTGATTTTTTTTGCAATAGTATTCTGTATAGCCTTTCCAGTT
1 ATTTCTATTAGCAAAATGATCTGA-TTCTACTGCAACAATATTCTATATAGCCTTTCCAGTT
7300372 GCAGTGTGCT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
61 23 0.43
62 31 0.57
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (61 bp):
ATTTCTATTAGCAAAATGATCTGATTCTACTGCAACAATATTCTATATAGCCTTTCCAGTT
Found at i:7317767 original size:33 final size:32
Alignment explanation
Indices: 7317730--7317803 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 32
7317720 CTTTATTCAG
7317730 TAACAGTATAGTGTGGGCCTTAGCCCAATACAA
1 TAACAGTA-AGTGTGGGCCTTAGCCCAATACAA
7317763 TAAC----AGTGTGGGCCTTAGCCCAATACAA
1 TAACAGTAAGTGTGGGCCTTAGCCCAATACAA
*
7317791 TAATAGTACAGTG
1 TAACAGTA-AGTG
7317804 CAATAATGCA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
28 27 0.77
33 8 0.23
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (32 bp):
TAACAGTAAGTGTGGGCCTTAGCCCAATACAA
Found at i:7317779 original size:28 final size:28
Alignment explanation
Indices: 7317739--7317793 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
7317729 GTAACAGTAT
7317739 AGTGTGGGCCTTAGCCCAATACAATAAC
1 AGTGTGGGCCTTAGCCCAATACAATAAC
7317767 AGTGTGGGCCTTAGCCCAATACAATAA
1 AGTGTGGGCCTTAGCCCAATACAATAA
7317794 TAGTACAGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.22
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAATAAC
Found at i:7317931 original size:26 final size:27
Alignment explanation
Indices: 7317897--7317980 Score: 93
Period size: 26 Copynumber: 3.2 Consensus size: 27
7317887 GCTAACACAC
*
7317897 CAATATCGCAGCAAAGTTGCCAGTAAT
1 CAATATCGCAGCAAAGCTGCCAGTAAT
* ** *
7317924 -AGTATCGCAGTGAAGCTGCTAGT-AT
1 CAATATCGCAGCAAAGCTGCCAGTAAT
*
7317949 CAATATCGCAGCAAAGCTACCAGTAA-
1 CAATATCGCAGCAAAGCTGCCAGTAAT
7317975 CAATAT
1 CAATAT
7317981 ATGTGGCAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
25 2 0.04
26 42 0.93
27 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (27 bp):
CAATATCGCAGCAAAGCTGCCAGTAAT
Found at i:7335130 original size:22 final size:22
Alignment explanation
Indices: 7335100--7335157 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
7335090 ATGTCATGAC
*
7335100 ACACAAGGTCCTGTTTCGCAAT
1 ACACCAGGTCCTGTTTCGCAAT
* * *
7335122 ACACCAGGTCCTATTTTGCGAT
1 ACACCAGGTCCTGTTTCGCAAT
7335144 ACACCAGGTCCTGT
1 ACACCAGGTCCTGT
7335158 GTCACAACAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (22 bp):
ACACCAGGTCCTGTTTCGCAAT
Found at i:7338824 original size:45 final size:46
Alignment explanation
Indices: 7338760--7338864 Score: 110
Period size: 45 Copynumber: 2.4 Consensus size: 46
7338750 ACATTTTCAT
* * * *
7338760 TTCCATTTC-C-ATTT-TAAGAAAACCGCATTCATTTTTAAATG-A
1 TTCCATTTCTCTATTTCGAAGAAAACCACAATCATTTCTAAATGTA
* * * *
7338802 TTCTATTTCTCTATTTCGAAGAAAACCATAATCATTTCTGAATGTT
1 TTCCATTTCTCTATTTCGAAGAAAACCACAATCATTTCTAAATGTA
7338848 TTCCATTTCTCTATTTC
1 TTCCATTTCTCTATTTC
7338865 TATTCATTTT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
42 8 0.16
43 1 0.02
44 4 0.08
45 21 0.42
46 16 0.32
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.45
Consensus pattern (46 bp):
TTCCATTTCTCTATTTCGAAGAAAACCACAATCATTTCTAAATGTA
Found at i:7342091 original size:21 final size:21
Alignment explanation
Indices: 7342067--7342113 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
7342057 GGATATTGCA
*
7342067 ATACCCTAGGGGGATCTAGCG
1 ATACCCTAGAGGGATCTAGCG
* *
7342088 ATACCTTAGAGGGATCTCGCG
1 ATACCCTAGAGGGATCTAGCG
7342109 ATACC
1 ATACC
7342114 ACTGCTTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.21
Consensus pattern (21 bp):
ATACCCTAGAGGGATCTAGCG
Found at i:7347766 original size:19 final size:18
Alignment explanation
Indices: 7347739--7347774 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
7347729 TGTAAATTAA
*
7347739 TAAATATAATCATAAAATT
1 TAAACATAAT-ATAAAATT
7347758 TAAACATAATATAAAAT
1 TAAACATAATATAAAAT
7347775 AACATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAACATAATATAAAATT
Found at i:7350169 original size:8 final size:8
Alignment explanation
Indices: 7350158--7350189 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
7350148 TAAGTTATTA
7350158 TATTATAT
1 TATTATAT
7350166 TATTATAT
1 TATTATAT
7350174 TATTATAT
1 TATTATAT
7350182 TATTATAT
1 TATTATAT
7350190 ATATAAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATTATAT
Found at i:7350184 original size:13 final size:13
Alignment explanation
Indices: 7350152--7350176 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7350142 AATAAGTAAG
7350152 TTATTATATTATA
1 TTATTATATTATA
7350165 TTATTATATTAT
1 TTATTATATTAT
7350177 TATATTATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATTATATTATA
Found at i:7350899 original size:25 final size:24
Alignment explanation
Indices: 7350871--7351004 Score: 134
Period size: 22 Copynumber: 5.6 Consensus size: 24
7350861 ACTTTAGCGC
7350871 GCTCTCTGATTATTAGCACGTTAGT
1 GCTCTCTG-TTATTAGCACGTTAGT
* *
7350896 GCTCTCTGACTATTAGCACGTTGGT
1 GCTCTCTG-TTATTAGCACGTTAGT
* *
7350921 GCTCTCTGATT-TTAGCATGTCAGT
1 GCTCTCTG-TTATTAGCACGTTAGT
* *
7350945 GCTCTCTG-T-TTAGCACATCAGT
1 GCTCTCTGTTATTAGCACGTTAGT
*
7350967 GCTCTCTG-TA-TAGCACTTTAGT
1 GCTCTCTGTTATTAGCACGTTAGT
7350989 GCTCTCTGTTCATTAG
1 GCTCTCTGTT-ATTAG
7351005 TGCATACCAA
Statistics
Matches: 95, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
22 39 0.41
23 1 0.01
24 19 0.20
25 36 0.38
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.40
Consensus pattern (24 bp):
GCTCTCTGTTATTAGCACGTTAGT
Found at i:7351045 original size:50 final size:49
Alignment explanation
Indices: 7350981--7351123 Score: 156
Period size: 44 Copynumber: 3.0 Consensus size: 49
7350971 TCTGTATAGC
7350981 ACTTTAGTGCTCTCTGTTCATTAGTGCATACCAATGCACCTCTGTATTT
1 ACTTTAGTGCTCTCTGTTCATTAGTGCATACCAATGCACCTCTGTATTT
* * * * **
7351030 A-TTCTGAGTGCTCTCTG-T--TTA--GCACATCAGTGC-TCTCTGTATAGC
1 ACTT-T-AGTGCTCTCTGTTCATTAGTGCATACCAATGCACCTCTGTAT-TT
7351075 ACTTTAGTGCTCTCTGTTCATTAGTGCATACCAATGCACCTCTGTATTT
1 ACTTTAGTGCTCTCTGTTCATTAGTGCATACCAATGCACCTCTGTATTT
7351124 GTTCCGTATA
Statistics
Matches: 72, Mismatches: 12, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
44 19 0.26
45 12 0.17
46 2 0.03
47 6 0.08
48 2 0.03
49 12 0.17
50 19 0.26
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (49 bp):
ACTTTAGTGCTCTCTGTTCATTAGTGCATACCAATGCACCTCTGTATTT
Found at i:7351059 original size:94 final size:94
Alignment explanation
Indices: 7350942--7351123 Score: 364
Period size: 94 Copynumber: 1.9 Consensus size: 94
7350932 TTAGCATGTC
7350942 AGTGCTCTCTGTTTAGCACATCAGTGCTCTCTGTATAGCACTTTAGTGCTCTCTGTTCATTAGTG
1 AGTGCTCTCTGTTTAGCACATCAGTGCTCTCTGTATAGCACTTTAGTGCTCTCTGTTCATTAGTG
7351007 CATACCAATGCACCTCTGTATTTATTCTG
66 CATACCAATGCACCTCTGTATTTATTCTG
7351036 AGTGCTCTCTGTTTAGCACATCAGTGCTCTCTGTATAGCACTTTAGTGCTCTCTGTTCATTAGTG
1 AGTGCTCTCTGTTTAGCACATCAGTGCTCTCTGTATAGCACTTTAGTGCTCTCTGTTCATTAGTG
7351101 CATACCAATGCACCTCTGTATTT
66 CATACCAATGCACCTCTGTATTT
7351124 GTTCCGTATA
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 88 1.00
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.39
Consensus pattern (94 bp):
AGTGCTCTCTGTTTAGCACATCAGTGCTCTCTGTATAGCACTTTAGTGCTCTCTGTTCATTAGTG
CATACCAATGCACCTCTGTATTTATTCTG
Found at i:7351061 original size:22 final size:22
Alignment explanation
Indices: 7351036--7351092 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
7351026 ATTTATTCTG
7351036 AGTGCTCTCTGTTTAGCACATC
1 AGTGCTCTCTGTTTAGCACATC
* * *
7351058 AGTGCTCTCTGTATAGCACTTT
1 AGTGCTCTCTGTTTAGCACATC
7351080 AGTGCTCTCTGTT
1 AGTGCTCTCTGTT
7351093 CATTAGTGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.16, C:0.25, G:0.19, T:0.40
Consensus pattern (22 bp):
AGTGCTCTCTGTTTAGCACATC
Found at i:7357085 original size:5 final size:5
Alignment explanation
Indices: 7357075--7357114 Score: 53
Period size: 5 Copynumber: 7.6 Consensus size: 5
7357065 ATAAGTAAGT
*
7357075 TATTA TATTA TATTA TTATAA TATTA TATTA TTATTA TAT
1 TATTA TATTA TATTA -TATTA TATTA TATTA -TATTA TAT
7357115 ACATAAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 22 0.71
6 9 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:7357091 original size:8 final size:8
Alignment explanation
Indices: 7357080--7357109 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
7357070 TAAGTTATTA
7357080 TATTATAT
1 TATTATAT
*
7357088 TATTATAA
1 TATTATAT
7357096 TATTATAT
1 TATTATAT
7357104 TATTAT
1 TATTAT
7357110 TATATACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
TATTATAT
Found at i:7357098 original size:16 final size:16
Alignment explanation
Indices: 7357074--7357114 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
7357064 AATAAGTAAG
7357074 TTATTATATTATATTA
1 TTATTATATTATATTA
*
7357090 TTATAATATTATATTA
1 TTATTATATTATATTA
7357106 TTATTATAT
1 TTATTATAT
7357115 ACATAAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATTATATTATATTA
Found at i:7358242 original size:25 final size:24
Alignment explanation
Indices: 7358214--7358347 Score: 134
Period size: 22 Copynumber: 5.6 Consensus size: 24
7358204 ACTTTAGCGC
7358214 GCTCTCTGATTATTAGCACGTTAGT
1 GCTCTCTG-TTATTAGCACGTTAGT
* *
7358239 GCTCTCTGACTATTAGCACGTTGGT
1 GCTCTCTG-TTATTAGCACGTTAGT
* *
7358264 GCTCTCTGATT-TTAGCATGTCAGT
1 GCTCTCTG-TTATTAGCACGTTAGT
* *
7358288 GCTCTCTG-T-TTAGCACATCAGT
1 GCTCTCTGTTATTAGCACGTTAGT
*
7358310 GCTCTCTG-TA-TAGCACTTTAGT
1 GCTCTCTGTTATTAGCACGTTAGT
7358332 GCTCTCTGTTCATTAG
1 GCTCTCTGTT-ATTAG
7358348 TGCATACCAA
Statistics
Matches: 95, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
22 39 0.41
23 1 0.01
24 19 0.20
25 36 0.38
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.40
Consensus pattern (24 bp):
GCTCTCTGTTATTAGCACGTTAGT
Found at i:7362925 original size:13 final size:13
Alignment explanation
Indices: 7362907--7362936 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7362897 TTCCCATAAT
*
7362907 ATTAATTAATTTA
1 ATTAATTAATTCA
7362920 ATTAATTAATTCA
1 ATTAATTAATTCA
7362933 ATTA
1 ATTA
7362937 TTTTCTTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTAATTAATTCA
Found at i:7364782 original size:4 final size:4
Alignment explanation
Indices: 7364769--7364832 Score: 73
Period size: 4 Copynumber: 16.5 Consensus size: 4
7364759 TAAATATTTT
*
7364769 TTAA TCAA TTAA TTTAA TTAA TTAA TT-- TTAA TTAA TTTAA TTAA TTAA
1 TTAA TTAA TTAA -TTAA TTAA TTAA TTAA TTAA TTAA -TTAA TTAA TTAA
7364817 TT-- TTAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TT
7364833 TCTTAATTTA
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
2 4 0.08
4 40 0.77
5 8 0.15
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (4 bp):
TTAA
Found at i:7364801 original size:10 final size:10
Alignment explanation
Indices: 7364786--7364828 Score: 59
Period size: 10 Copynumber: 4.0 Consensus size: 10
7364776 ATTAATTTAA
7364786 TTAATTAATT
1 TTAATTAATT
7364796 TTAATTAATTT
1 TTAATTAA-TT
7364807 AATTAATTAATT
1 --TTAATTAATT
7364819 TTAATTAATT
1 TTAATTAATT
7364829 AATTTCTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 18 0.60
11 2 0.07
12 2 0.07
13 8 0.27
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TTAATTAATT
Found at i:7364802 original size:23 final size:23
Alignment explanation
Indices: 7364775--7364849 Score: 111
Period size: 23 Copynumber: 3.4 Consensus size: 23
7364765 TTTTTTAATC
7364775 AATTAATTTAATTAATTAATTTT
1 AATTAATTTAATTAATTAATTTT
7364798 AATTAATTTAATTAATTAATTTT
1 AATTAATTTAATTAATTAATTTT
**
7364821 AATTAA-TTAATTTCTTAA-TTT
1 AATTAATTTAATTAATTAATTTT
7364842 AA-TAATTT
1 AATTAATTT
7364850 TCTCAATTCG
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
20 3 0.06
21 7 0.14
22 10 0.20
23 29 0.59
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (23 bp):
AATTAATTTAATTAATTAATTTT
Found at i:7364805 original size:27 final size:27
Alignment explanation
Indices: 7364767--7364833 Score: 97
Period size: 23 Copynumber: 2.6 Consensus size: 27
7364757 AATAAATATT
*
7364767 TTTTAATCAATTAATTTAATTAATTAA
1 TTTTAATTAATTAATTTAATTAATTAA
7364794 --TT--TTAATTAATTTAATTAATTAA
1 TTTTAATTAATTAATTTAATTAATTAA
7364817 TTTTAATTAATTAATTT
1 TTTTAATTAATTAATTT
7364834 CTTAATTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
23 20 0.57
25 4 0.11
27 11 0.31
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (27 bp):
TTTTAATTAATTAATTTAATTAATTAA
Found at i:7375999 original size:41 final size:41
Alignment explanation
Indices: 7375951--7376033 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
7375941 TTTGATAATG
7375951 AGAAGGATTATTTCACATCTTATTCCTAATTCATTTTTTAT
1 AGAAGGATTATTTCACATCTTATTCCTAATTCATTTTTTAT
7375992 AGAAGGATTATTTCACATCTTATTCCTAATTCATTTTTTAT
1 AGAAGGATTATTTCACATCTTATTCCTAATTCATTTTTTAT
7376033 A
1 A
7376034 TTATCTTATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.30, C:0.14, G:0.07, T:0.48
Consensus pattern (41 bp):
AGAAGGATTATTTCACATCTTATTCCTAATTCATTTTTTAT
Found at i:7386846 original size:17 final size:17
Alignment explanation
Indices: 7386821--7386854 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7386811 GATAAGTATA
*
7386821 TATTGTCATTGCATTTT
1 TATTGTCATTACATTTT
*
7386838 TATTTTCATTACATTTT
1 TATTGTCATTACATTTT
7386855 AATGTCAGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.06, T:0.62
Consensus pattern (17 bp):
TATTGTCATTACATTTT
Found at i:7405309 original size:2 final size:2
Alignment explanation
Indices: 7405302--7405328 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7405292 AGCTGGTGGA
7405302 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7405329 AATTAGAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7407359 original size:34 final size:37
Alignment explanation
Indices: 7407295--7407362 Score: 97
Period size: 34 Copynumber: 1.9 Consensus size: 37
7407285 TTTTAAATAT
*
7407295 TTATAAACATAGAGAATTAATTAAAAATTATTAAGAA
1 TTATAAACATAGAGAATAAATTAAAAATTATTAAGAA
*
7407332 TTATAAA-ATA-ATAATAAATT-AAAATTATTAA
1 TTATAAACATAGAGAATAAATTAAAAATTATTAA
7407363 AAACAACATC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 11 0.38
35 8 0.28
36 3 0.10
37 7 0.24
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.35
Consensus pattern (37 bp):
TTATAAACATAGAGAATAAATTAAAAATTATTAAGAA
Found at i:7408550 original size:14 final size:14
Alignment explanation
Indices: 7408533--7408559 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7408523 CCAAATTAGA
7408533 TTTCCCCAATTTCT
1 TTTCCCCAATTTCT
7408547 TTTCCCCAATTTC
1 TTTCCCCAATTTC
7408560 CCAACTTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.37, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTCCCCAATTTCT
Found at i:7410211 original size:34 final size:35
Alignment explanation
Indices: 7410167--7410233 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
7410157 CAATAAAATG
* *
7410167 TTTTCCGTAAAATGATTT-TTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
7410201 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
7410234 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.31, C:0.07, G:0.13, T:0.48
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:7410237 original size:14 final size:15
Alignment explanation
Indices: 7410161--7410237 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
7410151 GTTTGCCAAT
* *
7410161 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
7410175 AAAATGATTTT-TGG
1 AAAATGATTTTCTGG
*
7410189 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
7410209 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
7410224 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
7410238 TGTTTGGCAG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 4 0.08
20 8 0.16
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:7412930 original size:16 final size:16
Alignment explanation
Indices: 7412909--7412939 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7412899 AATTTTAATA
7412909 TTGGTGATATGAATGG
1 TTGGTGATATGAATGG
7412925 TTGGTGATATGAATG
1 TTGGTGATATGAATG
7412940 CATTTTAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.39
Consensus pattern (16 bp):
TTGGTGATATGAATGG
Found at i:7412987 original size:8 final size:8
Alignment explanation
Indices: 7412974--7412999 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7412964 TTCTATGAAT
7412974 TTTTTATA
1 TTTTTATA
7412982 TTTTTATA
1 TTTTTATA
7412990 TTTTTATA
1 TTTTTATA
7412998 TT
1 TT
7413000 ATTTGCTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTATA
Found at i:7413049 original size:15 final size:15
Alignment explanation
Indices: 7413029--7413067 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
7413019 AATACTATGT
7413029 TAAATTTTATTTTTA
1 TAAATTTTATTTTTA
*
7413044 TAAATTTAAATTTTTA
1 TAAATTT-TATTTTTA
7413060 T-AATTTTA
1 TAAATTTTA
7413068 AATTTAGCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 1 0.05
15 12 0.57
16 8 0.38
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TAAATTTTATTTTTA
Found at i:7413058 original size:16 final size:16
Alignment explanation
Indices: 7413037--7413072 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
7413027 GTTAAATTTT
7413037 ATTTTTATAAATTTAA
1 ATTTTTATAAATTTAA
*
7413053 ATTTTTATAATTTTAA
1 ATTTTTATAAATTTAA
7413069 ATTT
1 ATTT
7413073 AGCTAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTTTTATAAATTTAA
Found at i:7421910 original size:10 final size:10
Alignment explanation
Indices: 7421897--7421971 Score: 66
Period size: 10 Copynumber: 7.6 Consensus size: 10
7421887 TTTTTAAAAT
7421897 TTAAAAATTA
1 TTAAAAATTA
*
7421907 TTAAAAATCA
1 TTAAAAATTA
*
7421917 TAAAAAATTA
1 TTAAAAATTA
7421927 -TAAAAATT-
1 TTAAAAATTA
*
7421935 TATAAAAA-AA
1 T-TAAAAATTA
7421945 TTAAAAATTA
1 TTAAAAATTA
**
7421955 TATAAATTTTA
1 T-TAAAAATTA
7421966 TTAAAA
1 TTAAAA
7421972 GATAACGATA
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
9 13 0.25
10 30 0.59
11 8 0.16
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:7421924 original size:20 final size:20
Alignment explanation
Indices: 7421899--7421971 Score: 80
Period size: 20 Copynumber: 3.7 Consensus size: 20
7421889 TTTAAAATTT
*
7421899 AAAAATTATTAAAAATCATA
1 AAAAATTATTAAAAATTATA
7421919 AAAAATTA-TAAAAATTTATA
1 AAAAATTATTAAAAA-TTATA
7421939 AAAAA--ATTAAAAATTATA
1 AAAAATTATTAAAAATTATA
**
7421957 TAAATTTTATTAAAA
1 -AAAAATTATTAAAA
7421972 GATAACGATA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
18 6 0.13
19 15 0.33
20 17 0.38
21 7 0.16
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAAATTATTAAAAATTATA
Found at i:7421930 original size:29 final size:28
Alignment explanation
Indices: 7421892--7421971 Score: 83
Period size: 28 Copynumber: 2.8 Consensus size: 28
7421882 AAGTCTTTTT
*
7421892 AAAATT-TAAAAATTATTAAAAATCATAA
1 AAAATTATAAAAATTATTAAAAA-AATAA
*
7421920 AAAATTATAAAAATT-TATAAAAAAATTA
1 AAAATTATAAAAATTAT-TAAAAAAATAA
*
7421948 AAAATTATATAAATTTTATTAAAA
1 AAAATTATA-AAA-ATTATTAAAA
7421972 GATAACGATA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
28 19 0.43
29 17 0.39
30 7 0.16
31 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (28 bp):
AAAATTATAAAAATTATTAAAAAAATAA
Found at i:7421950 original size:28 final size:30
Alignment explanation
Indices: 7421892--7421976 Score: 97
Period size: 29 Copynumber: 2.9 Consensus size: 30
7421882 AAGTCTTTTT
*
7421892 AAAATT-TAAAAA-TTATTAAAAATCATAA
1 AAAATTATAAAAATTTATTAAAAATAATAA
*
7421920 AAAATTATAAAAATTTA-TAAAAA-AATTA
1 AAAATTATAAAAATTTATTAAAAATAATAA
*
7421948 AAAATTATATAAATTTTATTAAAAGATAA
1 AAAATTATA-AAAATTTATTAAAA-ATAA
7421977 CGATACCGTT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
28 18 0.38
29 19 0.40
30 8 0.17
31 1 0.02
32 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (30 bp):
AAAATTATAAAAATTTATTAAAAATAATAA
Found at i:7422208 original size:16 final size:17
Alignment explanation
Indices: 7422169--7422232 Score: 67
Period size: 16 Copynumber: 3.8 Consensus size: 17
7422159 AAAAATAATA
* *
7422169 TATAAATCTAAAACAAAT
1 TATAAATTTATAA-AAAT
7422187 TATAAATTTATAAAAA-
1 TATAAATTTATAAAAAT
**
7422203 TATAAAAATATAAAAAT
1 TATAAATTTATAAAAAT
*
7422220 TAGAAATTTATAA
1 TATAAATTTATAA
7422233 TATATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
16 14 0.37
17 13 0.34
18 11 0.29
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (17 bp):
TATAAATTTATAAAAAT
Found at i:7422209 original size:7 final size:8
Alignment explanation
Indices: 7422195--7422219 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7422185 ATTATAAATT
7422195 TATAAAAA
1 TATAAAAA
7422203 TATAAAAA
1 TATAAAAA
7422211 TATAAAAA
1 TATAAAAA
7422219 T
1 T
7422220 TAGAAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
TATAAAAA
Found at i:7422892 original size:26 final size:27
Alignment explanation
Indices: 7422841--7422893 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
7422831 AAATAAAAAA
* *
7422841 TTACCAAAATGTTATAACTTTTTTTAT
1 TTACCAAAATATTATAACTTTATTTAT
7422868 TTACCAAAATA-TATATA-TTTATTTAT
1 TTACCAAAATATTATA-ACTTTATTTAT
7422894 CAAAATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (27 bp):
TTACCAAAATATTATAACTTTATTTAT
Found at i:7423123 original size:18 final size:19
Alignment explanation
Indices: 7423102--7423253 Score: 105
Period size: 18 Copynumber: 7.6 Consensus size: 19
7423092 GAGAGGGAAA
7423102 GAAAGAAAGAAAGGAG-AG
1 GAAAGAAAGAAAGGAGAAG
*
7423120 GAAAGAAAGAAA-AAGAAG
1 GAAAGAAAGAAAGGAGAAG
7423138 GAAAGAAAAGGAAAGGAGAAG
1 GAAAG-AAA-GAAAGGAGAAG
* *
7423159 AGAAAAAAAGAAAGAAAGAAAG
1 -GAAAGAAAGAAAG-GAG-AAG
*
7423181 AAGAAGAAAAGGAAAGGAGAA-
1 GA-AAG-AAA-GAAAGGAGAAG
*
7423202 GAAA-AAAGAAAGAAAGAAG
1 GAAAGAAAGAAAG-GAGAAG
*
7423221 GAAATAAAAAGAAAGGAGAAG
1 G-AA-AGAAAGAAAGGAGAAG
*
7423242 AGAAAAAAAGAA
1 -GAAAGAAAGAA
7423254 GAAGAAGAGG
Statistics
Matches: 108, Mismatches: 10, Indels: 30
0.73 0.07 0.20
Matches are distributed among these distances:
17 7 0.06
18 26 0.24
19 4 0.04
20 21 0.19
21 20 0.19
22 20 0.19
23 5 0.05
24 5 0.05
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.01
Consensus pattern (19 bp):
GAAAGAAAGAAAGGAGAAG
Found at i:7423259 original size:44 final size:45
Alignment explanation
Indices: 7423121--7423259 Score: 181
Period size: 44 Copynumber: 3.3 Consensus size: 45
7423111 AAAGGAGAGG
7423121 AAAGAAAGAA-AAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAA
1 AAAGAAAGAAGAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAA
7423165 AAAGAAAGAAAGAAAGAA-G-AAGAAAAGGAAAGGAG-A-AG-AAA
1 AAAGAAAG-AAGAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAA
* *
7423206 AAAG--A-AAGAAAGAAGGAAATAAAAAGAAAGGAGAAGAGAAAA
1 AAAGAAAGAAGAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAA
7423248 AAAG-AAGAAGAA
1 AAAGAAAGAAGAA
7423260 GAGGGAAGGA
Statistics
Matches: 84, Mismatches: 2, Indels: 18
0.81 0.02 0.17
Matches are distributed among these distances:
37 9 0.11
38 1 0.01
39 15 0.18
40 1 0.01
41 9 0.11
42 9 0.11
43 2 0.02
44 29 0.35
45 3 0.04
46 6 0.07
ACGTcount: A:0.71, C:0.00, G:0.28, T:0.01
Consensus pattern (45 bp):
AAAGAAAGAAGAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAA
Found at i:7428759 original size:18 final size:18
Alignment explanation
Indices: 7428736--7428780 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
7428726 ATCCCAATGA
7428736 TCGCCACCACCTTCTTCT
1 TCGCCACCACCTTCTTCT
*
7428754 TCGCCAGCACCTTCTTCT
1 TCGCCACCACCTTCTTCT
*
7428772 TCACCACCA
1 TCGCCACCA
7428781 ACCATGTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.16, C:0.49, G:0.07, T:0.29
Consensus pattern (18 bp):
TCGCCACCACCTTCTTCT
Found at i:7429562 original size:17 final size:18
Alignment explanation
Indices: 7429526--7429564 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
7429516 TTACTAAGTT
7429526 ACATCTTAATACATTAATA
1 ACATCTTAATACA-TAATA
7429545 ACATCTTAATAC-TAATA
1 ACATCTTAATACATAATA
7429562 ACA
1 ACA
7429565 ACAACAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.40
19 12 0.60
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (18 bp):
ACATCTTAATACATAATA
Found at i:7429569 original size:3 final size:3
Alignment explanation
Indices: 7429561--7429589 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7429551 TAATACTAAT
7429561 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
7429590 TAATAATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:7429594 original size:3 final size:3
Alignment explanation
Indices: 7429588--7429618 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
7429578 CAACAACAAC
*
7429588 AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7429619 CTAACTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7429766 original size:10 final size:11
Alignment explanation
Indices: 7429726--7429765 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
7429716 TAAAAAATAC
7429726 CTTCTTTTTCT
1 CTTCTTTTTCT
*
7429737 CCTCTTTTTCT
1 CTTCTTTTTCT
7429748 C-TCTTTTTCT
1 CTTCTTTTTCT
7429758 CTTCTTTT
1 CTTCTTTT
7429766 CCGCAGCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 10 0.37
11 17 0.63
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (11 bp):
CTTCTTTTTCT
Found at i:7429895 original size:27 final size:26
Alignment explanation
Indices: 7429865--7429939 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 26
7429855 CAATCAATAC
*
7429865 GGCACCATTGGTGCCGCCAATGGTATT
1 GGCACCATTGGTGCCGCCAATGCT-TT
7429892 GGCACCATTGGTGCCGCCAATTGCTTT
1 GGCACCATTGGTGCCGCCAA-TGCTTT
7429919 GGCA-CATTTGGTGCCGCCAAT
1 GGCACCA-TTGGTGCCGCCAAT
7429940 CCCATTGGTG
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
26 3 0.07
27 39 0.87
28 3 0.07
ACGTcount: A:0.17, C:0.28, G:0.28, T:0.27
Consensus pattern (26 bp):
GGCACCATTGGTGCCGCCAATGCTTT
Found at i:7429999 original size:13 final size:12
Alignment explanation
Indices: 7429976--7430000 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7429966 GTCACATCAG
7429976 TCAGATTTTTTT
1 TCAGATTTTTTT
7429988 TCAGATTTTTTT
1 TCAGATTTTTTT
7430000 T
1 T
7430001 GATATATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.68
Consensus pattern (12 bp):
TCAGATTTTTTT
Found at i:7430028 original size:23 final size:23
Alignment explanation
Indices: 7430002--7430046 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
7429992 ATTTTTTTTG
7430002 ATATATTTTGGTAAATAAAAAAT
1 ATATATTTTGGTAAATAAAAAAT
7430025 ATATATTTTGGTAAATAAAAAA
1 ATATATTTTGGTAAATAAAAAA
7430047 AAGTTATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (23 bp):
ATATATTTTGGTAAATAAAAAAT
Found at i:7431519 original size:41 final size:40
Alignment explanation
Indices: 7431444--7431528 Score: 98
Period size: 41 Copynumber: 2.1 Consensus size: 40
7431434 TAAAAACATA
*
7431444 AAAACAAATATTAAAACAAGAAACAAATAAAAAATGATACT
1 AAAACAAATATTAAAACAAGAAACAAATAAAAAAT-ATAAT
* * * * **
7431485 AAAACAATTCTTAAAACAATACACAAATTGAAAATATAAT
1 AAAACAAATATTAAAACAAGAAACAAATAAAAAATATAAT
7431525 AAAA
1 AAAA
7431529 AGTGATTATA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
40 8 0.22
41 29 0.78
ACGTcount: A:0.66, C:0.11, G:0.04, T:0.20
Consensus pattern (40 bp):
AAAACAAATATTAAAACAAGAAACAAATAAAAAATATAAT
Found at i:7431678 original size:11 final size:11
Alignment explanation
Indices: 7431664--7431739 Score: 57
Period size: 11 Copynumber: 6.8 Consensus size: 11
7431654 AAAGAACAAT
*
7431664 AAAACACCACA
1 AAAACAGCACA
*
7431675 AAAAGTAGCACA
1 AAAA-CAGCACA
* *
7431687 AAAACAACACC
1 AAAACAGCACA
7431698 AAAACAGCATC-
1 AAAACAGCA-CA
*
7431709 AAAACAACAC-
1 AAAACAGCACA
*
7431719 CAAACAGCACAA
1 AAAACAGCAC-A
7431731 AAAACAGCA
1 AAAACAGCA
7431740 TCACCAACGA
Statistics
Matches: 51, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
10 9 0.18
11 24 0.47
12 18 0.35
ACGTcount: A:0.62, C:0.29, G:0.07, T:0.03
Consensus pattern (11 bp):
AAAACAGCACA
Found at i:7431736 original size:22 final size:22
Alignment explanation
Indices: 7431681--7431733 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
7431671 CACAAAAAGT
7431681 AGCACAAAAACAACACCAAAAC
1 AGCACAAAAACAACACCAAAAC
7431703 AGCATC-AAAACAACACC-AAAC
1 AGCA-CAAAAACAACACCAAAAC
7431724 AGCACAAAAA
1 AGCACAAAAA
7431734 ACAGCATCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 1 0.03
21 12 0.41
22 15 0.52
23 1 0.03
ACGTcount: A:0.62, C:0.30, G:0.06, T:0.02
Consensus pattern (22 bp):
AGCACAAAAACAACACCAAAAC
Found at i:7434566 original size:35 final size:35
Alignment explanation
Indices: 7434520--7434592 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
7434510 TTTGAATTCA
7434520 TTACGTAGATTTTTTGAAGTAAACATATAATGTCG
1 TTACGTAGATTTTTTGAAGTAAACATATAATGTCG
7434555 TTACGTAGATTTTTTGAAGTAAACATATAATGTCG
1 TTACGTAGATTTTTTGAAGTAAACATATAATGTCG
7434590 TTA
1 TTA
7434593 GGCCAAGAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.34, C:0.08, G:0.16, T:0.41
Consensus pattern (35 bp):
TTACGTAGATTTTTTGAAGTAAACATATAATGTCG
Found at i:7437607 original size:28 final size:28
Alignment explanation
Indices: 7437576--7437653 Score: 133
Period size: 28 Copynumber: 2.9 Consensus size: 28
7437566 ATTTATTTAT
7437576 TTAGGGTTTAGGGATTTTAAAAAATAAA
1 TTAGGGTTTAGGGATTTTAAAAAATAAA
*
7437604 TTAGGGTTTGGGGATTTTAAAAAATAAA
1 TTAGGGTTTAGGGATTTTAAAAAATAAA
7437632 TTAGGGTTTA-GGA-TTTAAAAAA
1 TTAGGGTTTAGGGATTTTAAAAAA
7437654 CATTAATTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 9 0.19
27 3 0.06
28 36 0.75
ACGTcount: A:0.41, C:0.00, G:0.23, T:0.36
Consensus pattern (28 bp):
TTAGGGTTTAGGGATTTTAAAAAATAAA
Found at i:7437707 original size:33 final size:33
Alignment explanation
Indices: 7437628--7437714 Score: 106
Period size: 33 Copynumber: 2.6 Consensus size: 33
7437618 TTTTAAAAAA
*
7437628 TAAATTAGGGTTT-AGGATTTAAAAAACATTAAT
1 TAAATTA-GGTTTAAGGTTTTAAAAAACATTAAT
*
7437661 TAAATTAGGTTTAAGGTTTTAAGAAA-ATTAAT
1 TAAATTAGGTTTAAGGTTTTAAAAAACATTAAT
*
7437693 TAACTTAGGCTTTAAGGGTTTT
1 TAAATTAGG-TTTAA-GGTTTT
7437715 TTAAAATAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
32 19 0.40
33 23 0.48
34 6 0.12
ACGTcount: A:0.39, C:0.03, G:0.17, T:0.40
Consensus pattern (33 bp):
TAAATTAGGTTTAAGGTTTTAAAAAACATTAAT
Found at i:7438218 original size:127 final size:126
Alignment explanation
Indices: 7437811--7438329 Score: 688
Period size: 125 Copynumber: 4.1 Consensus size: 126
7437801 TTTGTATTTT
* * *
7437811 TTTTTCTACAGTAGTTTCTGAAAAATTAATTTTGAGAAGACGATTATGAAAAAATAGTGACAAAA
1 TTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGATTCTGAAAAAATAGTGTCAAAA
* * * * *
7437876 ACGCTTCAAGCAAGATGCACTATTAGCAAAAGTACTGAAAAAA-CTCCCACT-TGGACGTTA
66 ACGCTTCAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCA-TGTGGACGCTC
* * * * *
7437936 TTTTTCTATAGTAGTTTCTGAAAAAATAATTTTAAGAAGACAATTCTAAAAAAATAATGTCAAAA
1 TTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGATTCTGAAAAAATAGTGTCAAAA
* *
7438001 ACGCTTCAAACAGGATGCACTGTCAGCAAAATTACT-AAAAAAGCTCCCATGTGGACGCTC
66 ACGCTTCAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCATGTGGACGCTC
* * * *
7438061 TTTTTCTACAATAGTTTCCGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTTAAAA
1 TTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGATTCTGAAAAAATAGTGTCAAAA
* *
7438126 ACGCTTCAAGC-AGAATGCACTGTCAACAAAAATTACTGAAAAAAGCTCCCATGTAGACGCTC
66 ACGCTTCAAGCAAG-ATGCACTGTCAGC-AAAATTACTGAAAAAAGCTCCCATGTGGACGCTC
* * ** *
7438188 TTTTTATACAGTAG-TTCTTGAAAAAATAATTTTCAGAAGGTGATTTTGAAAAAATAGTGTCAAA
1 TTTTTCTACAGTAGTTTC-TGAAAAAATAATTTTGAGAAGACGATTCTGAAAAAATAGTGTCAAA
* * * * *
7438252 AACGCTTTAAGCAAGATGCATTGTTAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
65 AACGCTTCAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCATGTGGACGCTC
7438314 TTTTTCTACAGTAGTT
1 TTTTTCTACAGTAGTT
7438330 CCTGCTTGGC
Statistics
Matches: 341, Mismatches: 45, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
124 8 0.02
125 179 0.52
126 56 0.16
127 96 0.28
128 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGATTCTGAAAAAATAGTGTCAAAA
ACGCTTCAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCATGTGGACGCTC
Found at i:7443168 original size:21 final size:21
Alignment explanation
Indices: 7443144--7443187 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
7443134 TTCTATTTAA
*
7443144 CTCTTATAAGTTTCTGTTCAG
1 CTCTTACAAGTTTCTGTTCAG
* *
7443165 CTCTTACGAGTTTTTGTTCAG
1 CTCTTACAAGTTTCTGTTCAG
7443186 CT
1 CT
7443188 TTTCAGCTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (21 bp):
CTCTTACAAGTTTCTGTTCAG
Found at i:7443308 original size:12 final size:12
Alignment explanation
Indices: 7443291--7443325 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
7443281 CAGTAAGAGA
7443291 ATGATATGTATC
1 ATGATATGTATC
7443303 ATGATATGTATC
1 ATGATATGTATC
7443315 ATGATATGTAT
1 ATGATATGTAT
7443326 ATATATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.34, C:0.06, G:0.17, T:0.43
Consensus pattern (12 bp):
ATGATATGTATC
Found at i:7445145 original size:42 final size:42
Alignment explanation
Indices: 7445098--7445194 Score: 149
Period size: 42 Copynumber: 2.3 Consensus size: 42
7445088 TTTCGAAAGC
* *
7445098 CCACACGACCTGAGATACAGGTGTGTCTCTTGACCGTGTGAA
1 CCACACGGCCTGAGACACAGGTGTGTCTCTTGACCGTGTGAA
** *
7445140 CCACACGGTTTGAGACACAGGTGTGTCTCTTGACCGTGTGAG
1 CCACACGGCCTGAGACACAGGTGTGTCTCTTGACCGTGTGAA
7445182 CCACACGGCCTGA
1 CCACACGGCCTGA
7445195 TCACACGGGC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (42 bp):
CCACACGGCCTGAGACACAGGTGTGTCTCTTGACCGTGTGAA
Found at i:7455417 original size:13 final size:12
Alignment explanation
Indices: 7455385--7455419 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
7455375 GTTTCAACTA
7455385 CATA-TTCCAAG
1 CATACTTCCAAG
7455396 CATACTTCCAAG
1 CATACTTCCAAG
7455408 CATCACTTCCAA
1 CAT-ACTTCCAA
7455420 ATATACCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 4 0.18
12 10 0.45
13 8 0.36
ACGTcount: A:0.34, C:0.34, G:0.06, T:0.26
Consensus pattern (12 bp):
CATACTTCCAAG
Found at i:7456880 original size:50 final size:50
Alignment explanation
Indices: 7456753--7457050 Score: 269
Period size: 50 Copynumber: 5.9 Consensus size: 50
7456743 TGATAATAAC
* * * * ** * *
7456753 ATGCCAAAGTCATGTCCCAAACATGGTCTTACATGGAATGTTTCATGT--
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
* * **
7456801 ACTGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCG
1 A-TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
* * * *** *
7456852 GTGCCCATGCCATGTCCTAGACATGGTCTTATGGGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
* * *
7456902 GTGCCAACT-CCATGTCCCAGACATGGCCTTACATGGGACCTCTCATCTCG
1 ATGCCAA-TGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
* *
7456952 ATGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATAATCTCAATG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---G
* *
7457008 ATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7457051 TTACCCAAAT
Statistics
Matches: 203, Mismatches: 36, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
48 1 0.00
49 37 0.18
50 122 0.60
51 1 0.00
53 2 0.01
56 40 0.20
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
Found at i:7463752 original size:17 final size:17
Alignment explanation
Indices: 7463730--7463765 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
7463720 TTACTGTTTC
7463730 TTCATTT-ACATATATCA
1 TTCATTTCA-ATATATCA
7463747 TTCATTTCAATATATCA
1 TTCATTTCAATATATCA
7463764 TT
1 TT
7463766 ATATATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.94
18 1 0.06
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (17 bp):
TTCATTTCAATATATCA
Found at i:7464040 original size:21 final size:21
Alignment explanation
Indices: 7464014--7464140 Score: 128
Period size: 21 Copynumber: 6.0 Consensus size: 21
7464004 CGAACACTCC
*
7464014 AACAGAAGCTCATGAGAGCTG
1 AACAGAAGCTCGTGAGAGCTG
** * * * *
7464035 AACAGAAAATCATAAAAGCTA
1 AACAGAAGCTCGTGAGAGCTG
* * * *
7464056 AACAAAAACTCGTAAGAGCTT
1 AACAGAAGCTCGTGAGAGCTG
7464077 AACAGAAGCTCGTGAGAGCTG
1 AACAGAAGCTCGTGAGAGCTG
*
7464098 AACAGAAGCTCGTGAAAGCTG
1 AACAGAAGCTCGTGAGAGCTG
* *
7464119 AACAGAAGCTTGTGAAAGCTG
1 AACAGAAGCTCGTGAGAGCTG
7464140 A
1 A
7464141 TCCACCCAAA
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 90 1.00
ACGTcount: A:0.43, C:0.17, G:0.24, T:0.16
Consensus pattern (21 bp):
AACAGAAGCTCGTGAGAGCTG
Found at i:7467782 original size:20 final size:20
Alignment explanation
Indices: 7467757--7467794 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7467747 AAAAAGAATC
7467757 AAAATAATTTTCAAAATTTT
1 AAAATAATTTTCAAAATTTT
*
7467777 AAAATAATTTTTAAAATT
1 AAAATAATTTTCAAAATT
7467795 CAAAATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
AAAATAATTTTCAAAATTTT
Found at i:7468773 original size:20 final size:19
Alignment explanation
Indices: 7468721--7468764 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
7468711 TAAAATTTTT
*
7468721 AATTTT-ATAATAATTAAA
1 AATTTTAATCATAATTAAA
7468739 AATTTTAATCATAATTAAA
1 AATTTTAATCATAATTAAA
7468758 ACATTTT
1 A-ATTTT
7468765 TAACTTAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.26
19 12 0.52
20 5 0.22
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (19 bp):
AATTTTAATCATAATTAAA
Found at i:7474085 original size:13 final size:13
Alignment explanation
Indices: 7474063--7474094 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7474053 AGTGTGTTTG
*
7474063 GTAGAGTGGAAAA
1 GTAGAATGGAAAA
7474076 GTAGAATGGAAAA
1 GTAGAATGGAAAA
7474089 GTAGAA
1 GTAGAA
7474095 GGCTAGAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.34, T:0.16
Consensus pattern (13 bp):
GTAGAATGGAAAA
Found at i:7474438 original size:22 final size:21
Alignment explanation
Indices: 7474407--7474447 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
7474397 TCTCTTTCTG
*
7474407 TTTTTCTTTTATTTCAATTTT
1 TTTTTCTTTTATATCAATTTT
*
7474428 TTTTTCATTTTCTATCAATT
1 TTTTTC-TTTTATATCAATT
7474448 GGGGGGGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTTTCTTTTATATCAATTTT
Found at i:7474805 original size:23 final size:23
Alignment explanation
Indices: 7474757--7474803 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
7474747 TTTCACTCTC
*
7474757 TTTAAAAAAATCTATTTTTCTAAA
1 TTTAAAAAAATCTATTTATC-AAA
*
7474781 TTTAAAAAGATCTATTTGATCAA
1 TTTAAAAAAATCTATTT-ATCAA
7474804 TTAACCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.45, C:0.09, G:0.04, T:0.43
Consensus pattern (23 bp):
TTTAAAAAAATCTATTTATCAAA
Found at i:7476818 original size:20 final size:21
Alignment explanation
Indices: 7476793--7476832 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
7476783 TATTTTAAAA
7476793 TATTTTTAAAATAC-TTTTTT
1 TATTTTTAAAATACATTTTTT
7476813 TATTTTTAAAATACATTTTT
1 TATTTTTAAAATACATTTTT
7476833 GGTGTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
TATTTTTAAAATACATTTTTT
Found at i:7476840 original size:20 final size:20
Alignment explanation
Indices: 7476797--7476840 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
7476787 TTAAAATATT
* * *
7476797 TTTAAAATACTTTTTTTATT
1 TTTAAAATACATTTTTGATG
*
7476817 TTTAAAATACATTTTTGGTG
1 TTTAAAATACATTTTTGATG
7476837 TTTA
1 TTTA
7476841 TTAAAAAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.59
Consensus pattern (20 bp):
TTTAAAATACATTTTTGATG
Found at i:7482302 original size:54 final size:53
Alignment explanation
Indices: 7482212--7482629 Score: 236
Period size: 54 Copynumber: 8.0 Consensus size: 53
7482202 GGTTGTCATG
* * * * * *
7482212 CTGATTTACAATCATGACCTTCTACATTAGAAATTTTATGAATCTTACGGTTCA
1 CTGATTTACAATCACGACCTTCTA-TTTTGAGATTTTACGAATCTCACGGTTCA
* * * **
7482266 CTGATTTACAATCACAACCTTCTATTTTCGAGATTTTACAAAGCTCATAG-TCTA
1 CTGATTTACAATCACGACCTTCTATTTT-GAGATTTTACGAATCTCACGGTTC-A
* * * * * **
7482320 TTGATTTACAATCATTG-CCTTCTACTTTCGAGATTTTACGAATCTAACCGTTTG
1 CTGATTTACAATCA-CGACCTTCTA-TTTTGAGATTTTACGAATCTCACGGTTCA
* * * * * * * *
7482374 CTGGTTTACGATTATGACCTAC--TTTTGAGATTTTAGGAATCTTACGGTCCA
1 CTGATTTACAATCACGACCTTCTATTTTGAGATTTTACGAATCTCACGGTTCA
* * * *
7482425 TTGATTTACGATCACGACCTTCAACTTTTGAGATTTTACGAATCTCACGG-TCTG
1 CTGATTTACAATCACGACCTTCTA-TTTTGAGATTTTACGAATCTCACGGTTC-A
* * * * *
7482479 CTAATTTACAATCACGA-C--C--TTTCGAGATTTCACGAATGTCACGGTTCG
1 CTGATTTACAATCACGACCTTCTATTTTGAGATTTTACGAATCTCACGGTTCA
* * * * *
7482527 CTGATTTA-AGATCATGTCCTTCTACTTTCT-AGATTTTACGAATCTC-CTTGTCCG
1 CTGATTTACA-ATCACGACCTTCTA-TTT-TGAGATTTTACGAATCTCAC-GGTTCA
* * * *
7482581 TTGATATACAATCACGACCTAC--TTTTGAGATTTTACGAATCTTACGGTT
1 CTGATTTACAATCACGACCTTCTATTTTGAGATTTTACGAATCTCACGGTT
7482630 TGTTGGTTCA
Statistics
Matches: 276, Mismatches: 65, Indels: 49
0.71 0.17 0.13
Matches are distributed among these distances:
47 1 0.00
48 35 0.13
49 3 0.01
50 1 0.00
51 61 0.22
52 1 0.00
53 9 0.03
54 160 0.58
55 5 0.02
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (53 bp):
CTGATTTACAATCACGACCTTCTATTTTGAGATTTTACGAATCTCACGGTTCA
Found at i:7482487 original size:105 final size:104
Alignment explanation
Indices: 7482213--7482628 Score: 331
Period size: 105 Copynumber: 4.0 Consensus size: 104
7482203 GTTGTCATGC
* * * * * * * *
7482213 TGATTTACAATCATGACCTTCTACATTAGAAATTTTATGAATCTTACGGT-TCACTGATTTACAA
1 TGATTTACGATCATG-CCTTCTACTTTTGAGATTTTACGAATCTCACCGTCT-GCTGATTTACAA
* * * * * ** *
7482277 TCACAACCTTCTATTTTCGAGATTTTACAAAGCTCATAGTCTAT
64 TCACGACCTAC--TTTT-GAGATTTTACGAATCTTACGGTCCAT
* * * * * *
7482321 TGATTTACAATCATTGCCTTCTACTTTCGAGATTTTACGAATCTAACCGTTTGCTGGTTTACGAT
1 TGATTTACGATCA-TGCCTTCTACTTTTGAGATTTTACGAATCTCACCGTCTGCTGATTTACAAT
* * *
7482386 TATGACCTACTTTTGAGATTTTAGGAATCTTACGGTCCAT
65 CACGACCTACTTTTGAGATTTTACGAATCTTACGGTCCAT
* * * *
7482426 TGATTTACGATCACGACCTTCAACTTTTGAGATTTTACGAATCTCACGGTCTGCTAATTTACAAT
1 TGATTTACGATCATG-CCTTCTACTTTTGAGATTTTACGAATCTCACCGTCTGCTGATTTACAAT
* * * * * **
7482491 CACGA-C--CTTTCGAGATTTCACGAATGTCACGGTTCGC
65 CACGACCTACTTTTGAGATTTTACGAATCTTACGGTCCAT
* * * * *
7482528 TGATTTAAGATCATGTCCTTCTACTTTCT-AGATTTTACGAATCTC-CTTGTCCGTTGATATACA
1 TGATTTACGATCATG-CCTTCTACTTT-TGAGATTTTACGAATCTCAC-CGTCTGCTGATTTACA
7482591 ATCACGACCTACTTTTGAGATTTTACGAATCTTACGGT
63 ATCACGACCTACTTTTGAGATTTTACGAATCTTACGGT
7482629 TTGTTGGTTC
Statistics
Matches: 247, Mismatches: 53, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
101 1 0.00
102 80 0.32
103 2 0.01
104 2 0.01
105 98 0.40
106 4 0.02
108 57 0.23
109 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.38
Consensus pattern (104 bp):
TGATTTACGATCATGCCTTCTACTTTTGAGATTTTACGAATCTCACCGTCTGCTGATTTACAATC
ACGACCTACTTTTGAGATTTTACGAATCTTACGGTCCAT
Found at i:7482722 original size:54 final size:54
Alignment explanation
Indices: 7482641--7482786 Score: 143
Period size: 54 Copynumber: 2.7 Consensus size: 54
7482631 GTTGGTTCAT
* * * * *
7482641 GATTTTACGAATCTCACGGTCCGTTGATTTACAAGT-ATAACATTTTACTTTTGA
1 GATTTTACGAATCTCACGCTCCATTGATTTACAA-TCACAACATTCTACTTTCGA
* * *
7482695 GATTTTACGAATCTCATTGCT-CATTGATTTACGATCACAACCTTCTACTTTCGA
1 GATTTTACGAATCTCA-CGCTCCATTGATTTACAATCACAACATTCTACTTTCGA
* * * * *
7482749 GATTTTACAAATCTCACGATCTAATGATTTACGATCAC
1 GATTTTACGAATCTCACGCTCCATTGATTTACAATCAC
7482787 GATCTTCTAT
Statistics
Matches: 76, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
53 3 0.04
54 71 0.93
55 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (54 bp):
GATTTTACGAATCTCACGCTCCATTGATTTACAATCACAACATTCTACTTTCGA
Found at i:7483055 original size:92 final size:93
Alignment explanation
Indices: 7482886--7483063 Score: 227
Period size: 92 Copynumber: 1.9 Consensus size: 93
7482876 ATTCGCAATA
* * * *
7482886 TTCTACGATACAATTCGTAGCATTTATGCAAATATAGTTCTCAATAATTCTACAAAACAGTTCAC
1 TTCTACGATACAATTCGTAGCATTTATGCAAATACAATTCACAATAATTCTACAAAACAATTCAC
* * *
7482951 GATGTTTTTGTAAATATAGTTTGTAATG
66 GATATTTGTGTAAATACAGTTTGTAATG
* * *
7482979 TTCTACGATACAATTTGT-GACA-TTATGCAAATACAATTCACAGTAATTCTACATAACAATTCA
1 TTCTACGATACAATTCGTAG-CATTTATGCAAATACAATTCACAATAATTCTACAAAACAATTCA
7483042 CGGA-ATTTGTGTAAATACAGTT
65 C-GATATTTGTGTAAATACAGTT
7483064 CATTACATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
92 52 0.71
93 21 0.29
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (93 bp):
TTCTACGATACAATTCGTAGCATTTATGCAAATACAATTCACAATAATTCTACAAAACAATTCAC
GATATTTGTGTAAATACAGTTTGTAATG
Found at i:7483065 original size:24 final size:24
Alignment explanation
Indices: 7483038--7483087 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
7483028 TACATAACAA
*
7483038 TTCACGGA-ATTTGTGTAAATACAG
1 TTCA-GGACATTTCTGTAAATACAG
**
7483062 TTCATTACATTTCTGTAAATACAG
1 TTCAGGACATTTCTGTAAATACAG
7483086 TT
1 TT
7483088 AAAATAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 1 0.05
24 21 0.95
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (24 bp):
TTCAGGACATTTCTGTAAATACAG
Found at i:7485339 original size:3 final size:3
Alignment explanation
Indices: 7485331--7485381 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
7485321 ATAAATTAAA
* *
7485331 TAT TAT TA- TAT TA- TAT TA- TAT TAT TAT AAT GTAT TAT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
7485374 TAT TAT TA
1 TAT TAT TA
7485382 ACTAATATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
2 6 0.15
3 32 0.80
4 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:7485348 original size:13 final size:13
Alignment explanation
Indices: 7485330--7485381 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
7485320 TATAAATTAA
7485330 ATATTAT-TATATT
1 ATATTATAT-TATT
7485343 ATATTATATTATT
1 ATATTATATTATT
* *
7485356 ATAATGTATTATT
1 ATATTATATTATT
*
7485369 AT-TAATATTATT
1 ATATTATATTATT
7485381 A
1 A
7485382 ACTAATATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
12 8 0.24
13 24 0.73
14 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (13 bp):
ATATTATATTATT
Found at i:7485873 original size:17 final size:18
Alignment explanation
Indices: 7485851--7485884 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7485841 TAAATGAGTT
7485851 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
7485868 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
7485885 AAAAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:7486391 original size:21 final size:21
Alignment explanation
Indices: 7486358--7486421 Score: 58
Period size: 21 Copynumber: 3.1 Consensus size: 21
7486348 TTATCGGCTT
*
7486358 TGCCG-ATCAGGCACTATATG
1 TGCCGTATTAGGCACTATATG
* *
7486378 TGCCGTATTAGGCACCACATG
1 TGCCGTATTAGGCACTATATG
* * * *
7486399 TGTCTTTTTAGGCACTTTATG
1 TGCCGTATTAGGCACTATATG
7486420 TG
1 TG
7486422 TTATATACTG
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
20 5 0.15
21 29 0.85
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.34
Consensus pattern (21 bp):
TGCCGTATTAGGCACTATATG
Found at i:7494529 original size:19 final size:19
Alignment explanation
Indices: 7494493--7494531 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7494483 AAGTAAAACT
* * *
7494493 ACAAAACATAACAGAAGAA
1 ACAAAACACAAAACAAGAA
7494512 ACAAAACACAAAACAAGAA
1 ACAAAACACAAAACAAGAA
7494531 A
1 A
7494532 GAAATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.18, G:0.08, T:0.03
Consensus pattern (19 bp):
ACAAAACACAAAACAAGAA
Found at i:7495211 original size:16 final size:16
Alignment explanation
Indices: 7495178--7495211 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7495168 TAAAAGTGTT
* *
7495178 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
7495194 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
7495210 AA
1 AA
7495212 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:7498038 original size:21 final size:21
Alignment explanation
Indices: 7498012--7498052 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7498002 AGACGAGCAA
* *
7498012 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
7498033 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
7498053 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:7499991 original size:16 final size:16
Alignment explanation
Indices: 7499958--7499991 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7499948 GGAGATTGTT
* *
7499958 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
7499974 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
7499990 AA
1 AA
7499992 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:7506488 original size:49 final size:49
Alignment explanation
Indices: 7506408--7506502 Score: 118
Period size: 49 Copynumber: 1.9 Consensus size: 49
7506398 ATTACAACTC
* * * *
7506408 GGGCTCCCAGTTCACGATGGTTATACGGTCACGGGTTGAAGTATAATTA
1 GGGCTCCCAGTTCACGATGGTTATACAGTCACAGATTCAAGTATAATTA
* ** *
7506457 GGGCTCCTAGTTTGCGATGGTTATGCAGTCACAGATTCAAGTATAA
1 GGGCTCCCAGTTCACGATGGTTATACAGTCACAGATTCAAGTATAA
7506503 CTCGGGCCTC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 38 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGGCTCCCAGTTCACGATGGTTATACAGTCACAGATTCAAGTATAATTA
Found at i:7507723 original size:74 final size:74
Alignment explanation
Indices: 7507579--7507727 Score: 226
Period size: 74 Copynumber: 2.0 Consensus size: 74
7507569 TTTTAGCGTA
* * * *
7507579 CTATTCCGGGTCCGTCAATTCATATTCACGTGCGCACATTTTCATTTCAGAAAGCACACTCCTGT
1 CTATTCCGGGTCCGTCAATTCATATTCACGTGCACACATTTCCATTTCAGAAAGCACACTCCCGC
7507644 AAACCTCAT
66 AAACCTCAT
* * *
7507653 CTATTCCGGGTCCGTCAATTCATATTCATGTGCACACATTTCCATTTTAGAGAGCACACTCCCGC
1 CTATTCCGGGTCCGTCAATTCATATTCACGTGCACACATTTCCATTTCAGAAAGCACACTCCCGC
*
7507718 GAACCTCAT
66 AAACCTCAT
7507727 C
1 C
7507728 CTTACAGCGG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
74 67 1.00
ACGTcount: A:0.25, C:0.31, G:0.14, T:0.30
Consensus pattern (74 bp):
CTATTCCGGGTCCGTCAATTCATATTCACGTGCACACATTTCCATTTCAGAAAGCACACTCCCGC
AAACCTCAT
Found at i:7509993 original size:49 final size:49
Alignment explanation
Indices: 7509911--7510034 Score: 122
Period size: 49 Copynumber: 2.5 Consensus size: 49
7509901 ATGGCATGAA
* * ** * ** *
7509911 ACTTGAACCCGCGACCGTATAATCATTGCCAACTTGGGGCCCAAGTTAT
1 ACTTCAACCCGTGACCACATAACCATTGCCAACTAAGAGCCCAAGTTAT
* * * * *
7509960 ACTTGAACTCGTGATCACATAACCATTGTCAACTAAGAGCCCTAGTTAT
1 ACTTCAACCCGTGACCACATAACCATTGCCAACTAAGAGCCCAAGTTAT
*
7510009 ACTTCAACCCGTGACCATATAACCAT
1 ACTTCAACCCGTGACCACATAACCAT
7510035 CGTGAACTGA
Statistics
Matches: 60, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
49 60 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (49 bp):
ACTTCAACCCGTGACCACATAACCATTGCCAACTAAGAGCCCAAGTTAT
Found at i:7512454 original size:9 final size:9
Alignment explanation
Indices: 7512440--7512464 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7512430 AAATTCAACA
7512440 ACGATTTTT
1 ACGATTTTT
7512449 ACGATTTTT
1 ACGATTTTT
7512458 ACGATTT
1 ACGATTT
7512465 AGTCATTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.52
Consensus pattern (9 bp):
ACGATTTTT
Found at i:7516318 original size:23 final size:23
Alignment explanation
Indices: 7516271--7516318 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
7516261 AAATAGCCAT
*
7516271 ATATCAGGAAGTTCAAGCGAGCC
1 ATATCAGGAAGTTCAAGAGAGCC
* * *
7516294 ATATCGGGAAGTTCCAGAGATCC
1 ATATCAGGAAGTTCAAGAGAGCC
7516317 AT
1 AT
7516319 TACTCAAGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (23 bp):
ATATCAGGAAGTTCAAGAGAGCC
Found at i:7521448 original size:16 final size:16
Alignment explanation
Indices: 7521416--7521465 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
7521406 AAGAAAATAA
*
7521416 ATAAAAGATAT-AAAT
1 ATAAAAAATATAAAAT
** *
7521431 ATAAGGATTATAAAAT
1 ATAAAAAATATAAAAT
7521447 ATAAAAAATATAAAAT
1 ATAAAAAATATAAAAT
7521463 ATA
1 ATA
7521466 GGTACGTACG
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
15 7 0.26
16 20 0.74
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (16 bp):
ATAAAAAATATAAAAT
Found at i:7521902 original size:3 final size:3
Alignment explanation
Indices: 7521867--7521953 Score: 52
Period size: 3 Copynumber: 28.3 Consensus size: 3
7521857 ATAAGAAAAC
* * * * * *
7521867 ATA ATA CTA ACA ATA GTA TTA ATA A-A TATA ATA ATA AAA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
* *
7521912 A-A GATA ATA ATG ACA ATA ATA ATA ATA ACTAA ATA ATA ATA A
1 ATA -ATA ATA ATA ATA ATA ATA ATA ATA A-T-A ATA ATA ATA A
7521954 AAAATGCTAA
Statistics
Matches: 63, Mismatches: 15, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
2 2 0.03
3 55 0.87
4 4 0.06
5 2 0.03
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:7522859 original size:20 final size:20
Alignment explanation
Indices: 7522834--7522872 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7522824 ACGGCGCAAA
**
7522834 GTGGTGGTGGTGACGTGACC
1 GTGGTGGTGACGACGTGACC
7522854 GTGGTGGTGACGACGTGAC
1 GTGGTGGTGACGACGTGAC
7522873 GTTGGCGGCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.15, G:0.49, T:0.23
Consensus pattern (20 bp):
GTGGTGGTGACGACGTGACC
Found at i:7527143 original size:20 final size:21
Alignment explanation
Indices: 7527103--7527144 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
7527093 TTTATGGTTT
*
7527103 TTTAAATATGAAATATTATAA
1 TTTAAATATGAAATATAATAA
*
7527124 TTTAAA-ATGAATTATAATAA
1 TTTAAATATGAAATATAATAA
7527144 T
1 T
7527145 CATTTAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (21 bp):
TTTAAATATGAAATATAATAA
Found at i:7537734 original size:22 final size:22
Alignment explanation
Indices: 7537706--7537750 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
7537696 TCTTACCAAG
7537706 GCCCTTTTGCTAAATGGTTTCT
1 GCCCTTTTGCTAAATGGTTTCT
7537728 GCCCTTTTGCTAAATGGTTTCT
1 GCCCTTTTGCTAAATGGTTTCT
7537750 G
1 G
7537751 TTCCCCTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.13, C:0.22, G:0.20, T:0.44
Consensus pattern (22 bp):
GCCCTTTTGCTAAATGGTTTCT
Found at i:7548914 original size:126 final size:125
Alignment explanation
Indices: 7548721--7548965 Score: 436
Period size: 126 Copynumber: 2.0 Consensus size: 125
7548711 TCGCCTCCAG
* *
7548721 CAGGATGCTATTTGAGAAGAAATTGTGAAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGG
1 CAGGATGCTATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGG
7548786 TCATGTAGGAAATAATTATTTTTTGACGTTTTCTGAGCAAATAGTATAAAATCGCTGATAC
66 TCATGTAGGAAATAATTATTTTTTGACG-TTTCTGAGCAAATAGTATAAAATCGCTGATAC
*
7548847 CAGGATGCTATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGATTTCTCTACAGTTGG
1 CAGGATGCTATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGG
* *
7548912 TCATGTAGGAAATAATTATTTTTTGACGTTTCTGAGCAAATAGTGTCAAATCGC
66 TCATGTAGGAAATAATTATTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGC
7548966 GCCCTCGTGG
Statistics
Matches: 114, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
125 24 0.21
126 90 0.79
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (125 bp):
CAGGATGCTATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGG
TCATGTAGGAAATAATTATTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTGATAC
Found at i:7554246 original size:56 final size:57
Alignment explanation
Indices: 7554169--7554278 Score: 161
Period size: 56 Copynumber: 1.9 Consensus size: 57
7554159 GTAAAACTAG
* ** *
7554169 GTAAAATTATTACATCCCAAAAACTTTTGTTAATGGTTAGTAA-ACTTATCAAATTAT
1 GTAAAATTATTACAGCCCAAAAAAGTGTGTTAATGGTTAGTAAGA-TTATCAAATTAT
7554226 GTAAAATTATTA-AGCCCAAAAAAGTGTGTTAATGGTTAGTAAGATTATCAAAT
1 GTAAAATTATTACAGCCCAAAAAAGTGTGTTAATGGTTAGTAAGATTATCAAAT
7554279 CCGCTGAGTT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
56 35 0.73
57 13 0.27
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (57 bp):
GTAAAATTATTACAGCCCAAAAAAGTGTGTTAATGGTTAGTAAGATTATCAAATTAT
Found at i:7554319 original size:28 final size:28
Alignment explanation
Indices: 7554291--7554585 Score: 267
Period size: 28 Copynumber: 11.0 Consensus size: 28
7554281 GCTGAGTTAT
*
7554291 GTTAGGGTTTTTACATT-AATTAAATTAT
1 GTTAGGGTTTTTA-ATTAAATTAAATTAG
* *
7554319 GTTAGGG--ATT--TT-AACTAAATTAG
1 GTTAGGGTTTTTAATTAAATTAAATTAG
*
7554342 GTTAGAGTTTTTAA-T----TAAATTAG
1 GTTAGGGTTTTTAATTAAATTAAATTAG
*
7554365 GTTAGGGTTTTAAATTAAATTAAATTAG
1 GTTAGGGTTTTTAATTAAATTAAATTAG
**
7554393 GTTAGGGTTTTTAATTAAATTAGGTTAGG
1 GTTAGGGTTTTTAATTAAATTAAATTA-G
7554422 GTT-GGGTTTTTAATTAAATTAGATTAGGTTAGGG
1 GTTAGGGTTTTTAATTAAATTA-A--A--TTA--G
7554456 GTTAGGGTTTTTAATTAAATTAAATTAG
1 GTTAGGGTTTTTAATTAAATTAAATTAG
7554484 GTTAGGGTTTTTAATTAAATTAAATTAG
1 GTTAGGGTTTTTAATTAAATTAAATTAG
7554512 GTTAGGG--TTT--TT-AATTAAATTAG
1 GTTAGGGTTTTTAATTAAATTAAATTAG
*
7554535 GTTAGGGTTTTAAATTAAATT--A--A-
1 GTTAGGGTTTTTAATTAAATTAAATTAG
*
7554558 GTTAGGG-ATTTAATTAAATTAAATTAG
1 GTTAGGGTTTTTAATTAAATTAAATTAG
7554585 G
1 G
7554586 GTTTTTAATT
Statistics
Matches: 225, Mismatches: 15, Indels: 55
0.76 0.05 0.19
Matches are distributed among these distances:
22 11 0.05
23 62 0.28
24 5 0.02
25 4 0.02
26 8 0.04
27 3 0.01
28 97 0.43
29 4 0.02
30 3 0.01
32 1 0.00
33 3 0.01
34 6 0.03
35 18 0.08
ACGTcount: A:0.34, C:0.01, G:0.21, T:0.45
Consensus pattern (28 bp):
GTTAGGGTTTTTAATTAAATTAAATTAG
Found at i:7554443 original size:23 final size:23
Alignment explanation
Indices: 7554306--7554424 Score: 157
Period size: 23 Copynumber: 5.0 Consensus size: 23
7554296 GGTTTTTACA
* *
7554306 TTAATTAAATTATGTTAGGGATT
1 TTAATTAAATTAGGTTAGGGTTT
* *
7554329 TTAACTAAATTAGGTTAGAGTTT
1 TTAATTAAATTAGGTTAGGGTTT
7554352 TTAATTAAATTAGGTTAGGGTTTT
1 TTAATTAAATTAGGTTAGGG-TTT
7554376 AAATTAAATTAAATTAGGTTAGGGTTT
1 ---TT-AATTAAATTAGGTTAGGGTTT
7554403 TTAATTAAATTAGGTTAGGGTT
1 TTAATTAAATTAGGTTAGGGTT
7554425 GGGTTTTTAA
Statistics
Matches: 85, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
23 57 0.67
24 5 0.06
27 5 0.06
28 18 0.21
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.45
Consensus pattern (23 bp):
TTAATTAAATTAGGTTAGGGTTT
Found at i:7554489 original size:91 final size:91
Alignment explanation
Indices: 7554364--7554540 Score: 302
Period size: 91 Copynumber: 1.9 Consensus size: 91
7554354 AATTAAATTA
**
7554364 GGTTAGGGTTTTAAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT-GGG
1 GGTTAGGGTTTTAAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTA-GGTTAGGG
7554428 TTTTTAATTAAATTAGATTAGGTTAGG
65 TTTTTAATTAAATTAGATTAGGTTAGG
*
7554455 GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGT
1 GGTTAGGGTTTTAAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGT
*
7554520 TTTTAATTAAATTAGGTTAGG
66 TTTTAATTAAATTAGATTAGG
7554541 GTTTTAAATT
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
90 4 0.05
91 77 0.95
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.45
Consensus pattern (91 bp):
GGTTAGGGTTTTAAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGT
TTTTAATTAAATTAGATTAGGTTAGG
Found at i:7554547 original size:18 final size:20
Alignment explanation
Indices: 7554502--7554593 Score: 78
Period size: 23 Copynumber: 4.2 Consensus size: 20
7554492 TTTTAATTAA
7554502 ATTAAATTAGGTTAGGGTTTTT
1 ATTAAATTAGGTTAGGG--TTT
7554524 AATTAAATTAGGTTAGGGTTTT
1 -ATTAAATTAGGTTAGGG-TTT
*
7554546 AAATTAAATTAAGTTAGGGATTT
1 --ATTAAATTAGGTTAGGG-TTT
**
7554569 AATTAAATTAAATTAGGGTTT
1 -ATTAAATTAGGTTAGGGTTT
7554590 -TTAA
1 ATTAA
7554594 TTTTAATCAA
Statistics
Matches: 65, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.06
21 3 0.05
22 21 0.32
23 37 0.57
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (20 bp):
ATTAAATTAGGTTAGGGTTT
Found at i:7554585 original size:45 final size:46
Alignment explanation
Indices: 7554498--7554595 Score: 144
Period size: 45 Copynumber: 2.2 Consensus size: 46
7554488 GGGTTTTTAA
* * **
7554498 TTAAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT
1 TTAAATTAAATTAAGTTAGGGTATTTAATTAAATTAAATTAGGGTT
7554544 TTAAATTAAATTAAGTTAGGG-ATTTAATTAAATTAAATTAGGGTT
1 TTAAATTAAATTAAGTTAGGGTATTTAATTAAATTAAATTAGGGTT
*
7554589 TTTAATT
1 TTAAATT
7554596 TTAATCAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 27 0.57
46 20 0.43
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (46 bp):
TTAAATTAAATTAAGTTAGGGTATTTAATTAAATTAAATTAGGGTT
Found at i:7556248 original size:19 final size:19
Alignment explanation
Indices: 7556210--7556259 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
7556200 GCCATTGTTG
*
7556210 AAAATA-TTAAAAAATTTA
1 AAAATATTTAAAAAATATA
*
7556228 AAATTATTTTAAAAAA-ATA
1 AAAATA-TTTAAAAAATATA
7556247 AAAATATTTAAAA
1 AAAATATTTAAAA
7556260 TTTTCTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 12 0.44
19 7 0.26
20 8 0.30
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAATATTTAAAAAATATA
Found at i:7556255 original size:29 final size:29
Alignment explanation
Indices: 7556217--7556279 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
7556207 TTGAAAATAT
7556217 TAAAAAATTTAAAATTAT-TTTAAAAAAA
1 TAAAAAATTTAAAATTATCTTTAAAAAAA
*
7556245 TAAAAATATTTAAAATTTTCTTTAAAAAAA
1 TAAAAA-ATTTAAAATTATCTTTAAAAAAA
7556275 TAAAA
1 TAAAA
7556280 TTGAATGGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 6 0.19
29 11 0.34
30 15 0.47
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (29 bp):
TAAAAAATTTAAAATTATCTTTAAAAAAA
Found at i:7556280 original size:29 final size:28
Alignment explanation
Indices: 7556217--7556280 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 28
7556207 TTGAAAATAT
*
7556217 TAAAAAATTTAAAATTATTTTAAAAAAA
1 TAAAATATTTAAAATTATTTTAAAAAAA
*
7556245 TAAAAATATTTAAAATTTTCTTTAAAAAAA
1 T-AAAATATTTAAAATTAT-TTTAAAAAAA
7556275 TAAAAT
1 TAAAAT
7556281 TGAATGGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
28 1 0.03
29 20 0.62
30 11 0.34
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (28 bp):
TAAAATATTTAAAATTATTTTAAAAAAA
Found at i:7556364 original size:30 final size:30
Alignment explanation
Indices: 7556330--7556388 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
7556320 TTGAAGGAAA
*
7556330 TTGAGACG-ATTTTAGAAGGAATTTGAGAGT
1 TTGAGA-GAATTTTAGAAGGAAATTGAGAGT
*
7556360 TTGAGAGAATTTTGGAAGGAAATTGAGAG
1 TTGAGAGAATTTTAGAAGGAAATTGAGAG
7556389 AATTTTTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.36, C:0.02, G:0.32, T:0.31
Consensus pattern (30 bp):
TTGAGAGAATTTTAGAAGGAAATTGAGAGT
Found at i:7556380 original size:52 final size:51
Alignment explanation
Indices: 7556308--7556410 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 51
7556298 TTAATATGGA
* * *
7556308 TTTGGAGATTTTTTGAAGGAAATTGAGACG-ATTTTAGAAGGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGA-GAATTTTAGAAGGAAATTGAGAG
* *
7556359 TTTGAGAGAATTTTGGAAGGAAATTGAGAGAATTTTTGAAGTAAATTGAGAG
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAATTTTAGAAGGAAATTGAGAG
7556411 AATTTTTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 5 0.11
52 40 0.89
ACGTcount: A:0.36, C:0.01, G:0.29, T:0.34
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTAGAAGGAAATTGAGAG
Found at i:7556417 original size:22 final size:22
Alignment explanation
Indices: 7556360--7556422 Score: 99
Period size: 22 Copynumber: 2.9 Consensus size: 22
7556350 ATTTGAGAGT
*
7556360 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTTGAAGGAAA
*
7556382 TTGAGAGAATTTTTGAAGTAAA
1 TTGAGAGAATTTTTGAAGGAAA
*
7556404 TTGAGAGAATTTTTAAAGG
1 TTGAGAGAATTTTTGAAGG
7556423 GTATGAGATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.40, C:0.00, G:0.27, T:0.33
Consensus pattern (22 bp):
TTGAGAGAATTTTTGAAGGAAA
Found at i:7557937 original size:19 final size:19
Alignment explanation
Indices: 7557913--7557952 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7557903 AAGAAACCTC
*
7557913 TTTTCACCCGGATATGATA
1 TTTTCACCCAGATATGATA
*
7557932 TTTTCACCCAGATTTGATA
1 TTTTCACCCAGATATGATA
7557951 TT
1 TT
7557953 GCCACCCTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.42
Consensus pattern (19 bp):
TTTTCACCCAGATATGATA
Found at i:7557958 original size:19 final size:19
Alignment explanation
Indices: 7557917--7557959 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
7557907 AACCTCTTTT
* **
7557917 CACCCGGATATGATATTTT
1 CACCCAGATATGATATTGC
*
7557936 CACCCAGATTTGATATTGC
1 CACCCAGATATGATATTGC
7557955 CACCC
1 CACCC
7557960 TTCTCAATGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (19 bp):
CACCCAGATATGATATTGC
Found at i:7566708 original size:16 final size:16
Alignment explanation
Indices: 7566687--7566719 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7566677 TGGTTGAAAT
*
7566687 ATAAAGTTGTGGATTA
1 ATAAAGTTGTCGATTA
7566703 ATAAAGTTGTCGATTA
1 ATAAAGTTGTCGATTA
7566719 A
1 A
7566720 GTTTTAGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.03, G:0.21, T:0.36
Consensus pattern (16 bp):
ATAAAGTTGTCGATTA
Found at i:7569499 original size:39 final size:39
Alignment explanation
Indices: 7569440--7569564 Score: 153
Period size: 39 Copynumber: 3.2 Consensus size: 39
7569430 AATATTGAGA
* * *
7569440 ATATTCTTGAATGTTATGTGATTACATGATTGTTGAT-AT
1 ATATGCTTGAATGTTATGTGATTACATGAGTATT-ATGAT
*
7569479 ATATGCTTGAATGTTATGTGATTATATGAGTATTATGAT
1 ATATGCTTGAATGTTATGTGATTACATGAGTATTATGAT
* * * * *
7569518 ATATGCTTAAATGTTATGTGATTATATGTGTAATGTGAT
1 ATATGCTTGAATGTTATGTGATTACATGAGTATTATGAT
7569557 ATATGCTT
1 ATATGCTT
7569565 AAAAGTGAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
38 2 0.03
39 75 0.97
ACGTcount: A:0.30, C:0.04, G:0.19, T:0.47
Consensus pattern (39 bp):
ATATGCTTGAATGTTATGTGATTACATGAGTATTATGAT
Done.