Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 26 of 187
Found at i:7571874 original size:54 final size:54
Alignment explanation
Indices: 7571785--7571911 Score: 166
Period size: 54 Copynumber: 2.3 Consensus size: 54
7571775 ATATTCCACC
* * * * *
7571785 ATAACAATTGATTCAAAAGAAACAGTATTCTAACATAATAATCGATTTAAACAT
1 ATAACAATCGATTCAAAAGAAACAATAATCCAACATAACAATCGATTTAAACAT
* *
7571839 ATAACAATCGATTCAATAGAAGA-AATAATCCAACATAACAATCGATTTAAATAT
1 ATAACAATCGATTCAAAAGAA-ACAATAATCCAACATAACAATCGATTTAAACAT
7571893 ATAAACAATCGATTCAAAA
1 AT-AACAATCGATTCAAAA
7571912 TAAGAAGAAG
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
54 47 0.75
55 16 0.25
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (54 bp):
ATAACAATCGATTCAAAAGAAACAATAATCCAACATAACAATCGATTTAAACAT
Found at i:7571947 original size:95 final size:95
Alignment explanation
Indices: 7571839--7572045 Score: 333
Period size: 95 Copynumber: 2.2 Consensus size: 95
7571829 ATTTAAACAT
* * *
7571839 ATAACAATCGATTCAATAGAAGAAATAATCCAACATAACAATCGATTTAAATATATAAACAATCG
1 ATAACAATCGATTCAAAAGAAGAAATAATCCAACATAACAATCGATTTAAACATACAAACAATCG
*
7571904 ATTCAAAATAAGAAGAAGCAATATTCCACA
66 ATTCAAAAGAAGAAGAAGCAATATTCCACA
* * *
7571934 ATAACAATCGATTCAAAAGAAGAAGTATTCCAACATAACAATCGATTTAAACATACAAACAGTCG
1 ATAACAATCGATTCAAAAGAAGAAATAATCCAACATAACAATCGATTTAAACATACAAACAATCG
*
7571999 ATTCAAAAGAAGAAGAAGCAATATTCCACC
66 ATTCAAAAGAAGAAGAAGCAATATTCCACA
*
7572029 ATAACAATCAATTCAAA
1 ATAACAATCGATTCAAA
7572046 CATATAAACA
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
95 103 1.00
ACGTcount: A:0.52, C:0.17, G:0.09, T:0.22
Consensus pattern (95 bp):
ATAACAATCGATTCAAAAGAAGAAATAATCCAACATAACAATCGATTTAAACATACAAACAATCG
ATTCAAAAGAAGAAGAAGCAATATTCCACA
Found at i:7571954 original size:34 final size:34
Alignment explanation
Indices: 7571896--7571980 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 34
7571886 TAAATATATA
7571896 AACAATCGATTCAAAATAAGAAGAAGCAATATTCC-ACAAT
1 AACAATCGATTC--AA-AAGAAGAAG---TATTCCAAC-AT
7571936 AACAATCGATTCAAAAGAAGAAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGAAGTATTCCAACAT
7571970 AACAATCGATT
1 AACAATCGATT
7571981 TAAACATACA
Statistics
Matches: 44, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
34 19 0.43
35 2 0.05
37 9 0.20
38 2 0.05
40 12 0.27
ACGTcount: A:0.51, C:0.18, G:0.11, T:0.21
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGAAGTATTCCAACAT
Found at i:7572047 original size:61 final size:60
Alignment explanation
Indices: 7571950--7572106 Score: 190
Period size: 61 Copynumber: 2.6 Consensus size: 60
7571940 ATCGATTCAA
* * * *
7571950 AAGAAGAAGTATTCCAACATAACAATCGATTTAAACATACAAACAGTCGATTCAAAAGAAG
1 AAGAAGAA-TATTCCACCATAACAATCGATTCAAACATACAAACAATCAATTCAAAAGAAG
* *
7572011 AAGAAGCAATATTCCACCATAACAATCAATTCAAACATATAAACAATCAATTCAAAAGAAG
1 AAGAAG-AATATTCCACCATAACAATCGATTCAAACATACAAACAATCAATTCAAAAGAAG
* * *
7572072 GAGAAGTAGTATT-CATCCATAACAATTGATTCAAA
1 AAGAAG-AATATTCCA-CCATAACAATCGATTCAAA
7572107 ATAAGTAGTA
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
60 2 0.02
61 79 0.95
62 2 0.02
ACGTcount: A:0.50, C:0.17, G:0.11, T:0.22
Consensus pattern (60 bp):
AAGAAGAATATTCCACCATAACAATCGATTCAAACATACAAACAATCAATTCAAAAGAAG
Found at i:7572176 original size:55 final size:54
Alignment explanation
Indices: 7572092--7572227 Score: 148
Period size: 55 Copynumber: 2.5 Consensus size: 54
7572082 ATTCATCCAT
* * * * *
7572092 AACAATTGATTCAAAATAAGTAGTATTCCAACATGATAA-TCGATTTAAACATATA
1 AACAATAGATTCAAAAGAAGCAATATTCCAACAAGA-AAGTCGATTTAAACATA-A
* * *
7572147 AACAATCGATTCAAAAGAAGCAATATTCCAATAAGAAAGTCGATTTAAATATAA
1 AACAATAGATTCAAAAGAAGCAATATTCCAACAAGAAAGTCGATTTAAACATAA
* * *
7572201 AAAAATAAATCCAAAAGAAGCAATATT
1 AACAATAGATTCAAAAGAAGCAATATT
7572228 TTTGGGAAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
54 26 0.38
55 43 0.62
ACGTcount: A:0.52, C:0.12, G:0.10, T:0.26
Consensus pattern (54 bp):
AACAATAGATTCAAAAGAAGCAATATTCCAACAAGAAAGTCGATTTAAACATAA
Found at i:7572209 original size:156 final size:149
Alignment explanation
Indices: 7571665--7572199 Score: 657
Period size: 156 Copynumber: 3.5 Consensus size: 149
7571655 TAGACGTGCT
* * **
7571665 ACATAACAATCGATTTGAACATATAAACAATAAATTCAAAAGAAGCAATATTCCAACATAACAAT
1 ACATAATAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACATAACAAT
* *
7571730 CGATTTAAATATATAAACAATCGATTCAAAAGAAAAAAAAGAGCAATATTCCACCATAACAATTG
66 CGATTTAAATATATAAACAATCGATTCAAAAGAAGAAGAAGAG---TATTCCACCATAACAATTG
*
7571795 ATTCAAAAGAA-ACAGTATTCTA
128 ATTCAAAAGAAGA-AGTATTCCA
* * *
7571817 ACATAATAATCGATTTAAACATAT-AACAATCGATTCAATAGAAGAAATAATCCAACATAACAAT
1 ACATAATAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACATAACAAT
* * * *
7571881 CGATTTAAATATATAAACAATCGATTCAAAATAAGAAGAAGCAATATTCCACAATAACAATCGAT
66 CGATTTAAATATATAAACAATCGATTCAAAAGAAGAAGAAG-AGTATTCCACCATAACAATTGAT
7571946 TCAAAAGAAGAAGTATTCCA
130 TCAAAAGAAGAAGTATTCCA
* * * *
7571966 ACATAACAATCGATTTAAACATACAAACAGTCGATTCAAAAGAAGAAGAAGCAATATTCCACCAT
1 ACATAATAATCGATTTAAACATATAAACAATCGATTC-----AA-AAGAAGCAATATTCCAACAT
* * * * *
7572031 AACAATCAATTCAAACATATAAACAATCAATTCAAAAGAAGGAGAAGTAGTATT-CATCCATAAC
60 AACAATCGATTTAAATATATAAACAATCGATTCAAAAGAAGAAGAAG-AGTATTCCA-CCATAAC
* *
7572095 AATTGATTCAAAATAAGTAGTATTCCA
123 AATTGATTCAAAAGAAGAAGTATTCCA
* *
7572122 ACATGATAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCC-A-ATAAGAAA
1 ACATAATAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACATAA-CAA
7572185 GTCGATTTAAATATA
65 -TCGATTTAAATATA
7572200 AAAAAATAAA
Statistics
Matches: 329, Mismatches: 42, Indels: 26
0.83 0.11 0.07
Matches are distributed among these distances:
148 4 0.01
149 60 0.18
150 38 0.12
151 75 0.23
152 23 0.07
155 4 0.01
156 125 0.38
ACGTcount: A:0.51, C:0.16, G:0.09, T:0.24
Consensus pattern (149 bp):
ACATAATAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACATAACAAT
CGATTTAAATATATAAACAATCGATTCAAAAGAAGAAGAAGAGTATTCCACCATAACAATTGATT
CAAAAGAAGAAGTATTCCA
Found at i:7575053 original size:22 final size:21
Alignment explanation
Indices: 7575013--7575053 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
7575003 ATTGATGATT
*
7575013 TTGTAAAATTTAGAGATTAAA
1 TTGTAAAATTTAGAAATTAAA
*
7575034 TTGTATAAATTTTGAAATTA
1 TTGTA-AAATTTAGAAATTA
7575054 GGGGTAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (21 bp):
TTGTAAAATTTAGAAATTAAA
Found at i:7577392 original size:39 final size:39
Alignment explanation
Indices: 7577349--7577447 Score: 153
Period size: 39 Copynumber: 2.5 Consensus size: 39
7577339 CATATTCACT
* *
7577349 TTTAAGCATATATCACATTACACTTATAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* *
7577388 TTTAAGCATATATCACAATACTCATATAATCACATAATA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
*
7577427 TTCAAGCATATATCACAATAC
1 TTTAAGCATATATCACAATAC
7577448 TAAAAAAAAC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.32
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACACATATAATCACATAACA
Found at i:7577402 original size:22 final size:22
Alignment explanation
Indices: 7577349--7577404 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 22
7577339 CATATTCACT
*
7577349 TTTAAGCATATATCACATTACA
1 TTTAAGCATATATCACATAACA
*
7577371 CTT----ATA-ATCACATAACA
1 TTTAAGCATATATCACATAACA
7577388 TTTAAGCATATATCACA
1 TTTAAGCATATATCACA
7577405 ATACTCATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 10
0.67 0.08 0.26
Matches are distributed among these distances:
17 12 0.46
18 3 0.12
21 3 0.12
22 8 0.31
ACGTcount: A:0.43, C:0.20, G:0.04, T:0.34
Consensus pattern (22 bp):
TTTAAGCATATATCACATAACA
Found at i:7577443 original size:22 final size:22
Alignment explanation
Indices: 7577377--7577443 Score: 63
Period size: 22 Copynumber: 3.3 Consensus size: 22
7577367 TACACTTATA
* *
7577377 ATCACATAACATTTAAGCATAT
1 ATCACATAATATTCAAGCATAT
* *
7577399 ATCAC--AATACTC-A-TATA-
1 ATCACATAATATTCAAGCATAT
7577416 ATCACATAATATTCAAGCATAT
1 ATCACATAATATTCAAGCATAT
7577438 ATCACA
1 ATCACA
7577444 ATACTAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 10
0.68 0.12 0.20
Matches are distributed among these distances:
17 5 0.15
18 3 0.09
19 7 0.21
20 5 0.15
21 3 0.09
22 11 0.32
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.30
Consensus pattern (22 bp):
ATCACATAATATTCAAGCATAT
Found at i:7579143 original size:25 final size:23
Alignment explanation
Indices: 7579115--7579185 Score: 88
Period size: 25 Copynumber: 3.0 Consensus size: 23
7579105 CTATGTAATT
*
7579115 GGAAGCTCATGCGAGCCAAATATCG
1 GGAAGCTCATGAGAGCCAAA-AT-G
*
7579140 GGAAGCTCATAAGAGCCATAAATG
1 GGAAGCTCATGAGAGCCA-AAATG
*
7579164 GGAAGCTCAAGAGAGCCAAAAT
1 GGAAGCTCATGAGAGCCAAAAT
7579186 TAGAAAGCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.10
24 17 0.41
25 18 0.44
26 2 0.05
ACGTcount: A:0.39, C:0.20, G:0.27, T:0.14
Consensus pattern (23 bp):
GGAAGCTCATGAGAGCCAAAATG
Found at i:7582943 original size:15 final size:15
Alignment explanation
Indices: 7582923--7582958 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
7582913 GTTTTTTATC
*
7582923 ATTATTATTATTGCT
1 ATTATTATTATTCCT
7582938 ATTATTATTATTCCT
1 ATTATTATTATTCCT
7582953 ATTATT
1 ATTATT
7582959 TCATGTTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (15 bp):
ATTATTATTATTCCT
Found at i:7583718 original size:46 final size:46
Alignment explanation
Indices: 7583644--7583798 Score: 260
Period size: 46 Copynumber: 3.4 Consensus size: 46
7583634 TACGTATGAT
* *
7583644 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
7583688 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
7583734 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCTAAAGCTAA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
7583780 CACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACT
7583799 AATGAGAAGT
Statistics
Matches: 105, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
44 10 0.10
45 5 0.05
46 90 0.86
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:7585047 original size:21 final size:21
Alignment explanation
Indices: 7585023--7585064 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7585013 CTTTTTGTTC
*
7585023 AATTAATTATCGAAACTTTAA
1 AATTAATTAACGAAACTTTAA
**
7585044 AATTTCTTAACGAAACTTTAA
1 AATTAATTAACGAAACTTTAA
7585065 TACTAACTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (21 bp):
AATTAATTAACGAAACTTTAA
Found at i:7587403 original size:495 final size:495
Alignment explanation
Indices: 7586472--7587711 Score: 2336
Period size: 495 Copynumber: 2.5 Consensus size: 495
7586462 CTCGTGCGTA
*
7586472 ACCGACTCCCGCACCTATTTTCTCAAATTTCGCAGACCAAAATCATTTTCAAGGTGATCCGATCA
1 ACCGACTCCCGAACCTATTTTCTCAAATTTCGCAGACCAAAATCATTTTCAAGGTGATCCGATCA
*
7586537 CATCTCAATAAAAGATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGTTCCCTTTTTTTTTCA
66 CATCTCAATAAAAGATCGGTGGCGATTTCCATATTATTTTCAAAGTCGG-TCCCCTTTTTTTTCA
7586602 ATAAAAAATGGTTTCAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCT
130 ATAAAAAATGGTTTCAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCT
7586667 TGACAATAGAGGAATCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATT
195 TGACAATAGAGGAATCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATT
* * *
7586732 TGGAAAATGATAGGAATCAAATGAATTTAAGTTTGGCAAAGAAAATTGAATGGAAGAATTGGGAG
260 TGGAAAATAATAGGAATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAAAGGAAGAATTGGGAG
7586797 AACAAAGGGATGGCAAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGG
325 AACAAAGGGATGGCAAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGG
*
7586862 GTTTTTAGTTTAGATTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTTTGAGTTTGGACTATTT
390 GTTTTTAGTTTAGATTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTATTT
*
7586927 TATAAATTAGTCCTATTTTTAAAATTATAGGTTTCTACAAC
455 TATAAATTAGTCCTATTTTTAAAATTATAGGTTTCTAAAAC
7586968 ACCGACTCCCGAACCTATTTTCTCAAATTTCGCAGACCAAAATCATTTTCAAGGTGATCCGATCA
1 ACCGACTCCCGAACCTATTTTCTCAAATTTCGCAGACCAAAATCATTTTCAAGGTGATCCGATCA
7587033 CATCTCAATAAAAGATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGTCCCCTTTTTTTTCAA
66 CATCTCAATAAAAGATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGTCCCCTTTTTTTTCAA
7587098 TAAAAAATGGTTTCAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTT
131 TAAAAAATGGTTTCAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTT
*
7587163 GACAATAGAGGAATCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGGGGTTTAATTATTT
196 GACAATAGAGGAATCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTT
*
7587228 GGAAAATAATAGGAATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAAAGGAATAATTGGGAGA
261 GGAAAATAATAGGAATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAAAGGAAGAATTGGGAGA
7587293 ACAAAGGGATGGCAAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGG
326 ACAAAGGGATGGCAAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGG
*
7587358 TTTTTAGTTTAGATTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTCTTTT
391 TTTTTAGTTTAGATTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTATTTT
7587423 ATAAATTAGTCCTATTTTTAAAATTATAGGTTTCTAAAAC
456 ATAAATTAGTCCTATTTTTAAAATTATAGGTTTCTAAAAC
*
7587463 ACCGACTCCAGAACCTATTTTCTCAAATTTCGCAGACCAAAATCATTTTCAAGGTGATCCGATCA
1 ACCGACTCCCGAACCTATTTTCTCAAATTTCGCAGACCAAAATCATTTTCAAGGTGATCCGATCA
*
7587528 CATCTCAATAAAAGATCGGTGGCGATTTCCATTTTATTTTCAAAGTCGGTCCCCTTTTTTTTCAA
66 CATCTCAATAAAAGATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGTCCCCTTTTTTTTCAA
* *
7587593 TAAAAAATGGTTTCTACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACTAACAAGCTT
131 TAAAAAATGGTTTCAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTT
*
7587658 GACAATAGAGGAATCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAGG
196 GACAATAGAGGAATCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGG
7587712 ATCGGTGGCG
Statistics
Matches: 728, Mismatches: 16, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
495 615 0.84
496 113 0.16
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32
Consensus pattern (495 bp):
ACCGACTCCCGAACCTATTTTCTCAAATTTCGCAGACCAAAATCATTTTCAAGGTGATCCGATCA
CATCTCAATAAAAGATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGTCCCCTTTTTTTTCAA
TAAAAAATGGTTTCAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTT
GACAATAGAGGAATCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTT
GGAAAATAATAGGAATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAAAGGAAGAATTGGGAGA
ACAAAGGGATGGCAAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGG
TTTTTAGTTTAGATTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTATTTT
ATAAATTAGTCCTATTTTTAAAATTATAGGTTTCTAAAAC
Found at i:7587825 original size:170 final size:170
Alignment explanation
Indices: 7587541--7590431 Score: 5633
Period size: 170 Copynumber: 17.0 Consensus size: 170
7587531 CTCAATAAAA
* * *
7587541 GATCGGTGGCGATTTCCATTTTATTTTCAAAGTCGGTCCCCTTTTTTTTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
* * * * *
7587606 CTACAAATGAAAACCAAACGTTTGATCGAA-AACCCAAAAAACTAACAAGCTTGACAATAGAGGA
66 CAACAAATGAAAAGCAAACGGTTGATC-AATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGA
7587670 ATCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
130 ATCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7587711 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7587776 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7587841 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7587881 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7587946 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7588011 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7588051 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7588116 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7588181 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7588221 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7588286 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7588351 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7588391 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7588456 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7588521 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7588561 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7588626 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7588691 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7588731 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7588796 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7588861 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7588901 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7588966 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7589031 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7589071 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7589136 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7589201 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7589241 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7589306 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7589371 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7589411 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7589476 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7589541 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7589581 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7589646 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7589711 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7589751 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7589816 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7589881 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7589921 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7589986 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7590051 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7590091 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
7590156 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
66 CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
7590221 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
131 TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7590261 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
* * * *
7590326 CAACAAATGACAACCAAACGTTTGATCGAA-AACCCAAAAAACCAACAAGCTTGACAATAGAGGA
66 CAACAAATGAAAAGCAAACGGTTGATC-AATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGA
*
7590390 ATCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAG
130 ATCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
7590431 G
1 G
7590432 TTTAATTATT
Statistics
Matches: 2706, Mismatches: 13, Indels: 4
0.99 0.00 0.00
Matches are distributed among these distances:
169 2 0.00
170 2702 1.00
171 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (170 bp):
GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
CAACAAATGAAAAGCAAACGGTTGATCAATAACCCAAAAAACCAACAAGCTTGAGAATAGAGGAA
TCTATGGTGTTTTTGGGTGTTTTTCCTGGATTTTATGGAG
Found at i:7590845 original size:495 final size:495
Alignment explanation
Indices: 7590261--7593155 Score: 5551
Period size: 495 Copynumber: 5.8 Consensus size: 495
7590251 TTTTATGGAG
* *
7590261 GATCGGTGGCGATTCCCATATTATTTTCAAAGTCGGTCCCCTTTTTTGTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGTCCCCTTTTTTTTCAATAAAAAATGGTTT
*
7590326 CAACAAATGACAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTTGACAATAGAGGAA
66 CAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTTGACAATAGAGGAA
7590391 TCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTTGGAAAATGATAGG
131 TCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTTGGAAAATGATAGG
7590456 AATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAATGGAAGAATTGGGAGAACAAAGGGATGGC
196 AATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAATGGAAGAATTGGGAGAACAAAGGGATGGC
7590521 AAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGGTTTTTAGTTTAGA
261 AAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGGTTTTTAGTTTAGA
7590586 TTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTCTTTTATAAATTAGTCCT
326 TTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTCTTTTATAAATTAGTCCT
7590651 ATTTTTAAAATTATAGGTTTCTAAAACACCGACTCCCGAACCTATTTTCTCAAATTTCGCAGACC
391 ATTTTTAAAATTATAGGTTTCTAAAACACCGACTCCCGAACCTATTTTCTCAAATTTCGCAGACC
7590716 AAAATCATTTTCAAGGTGATCCGATCACATCTCAATAAAA
456 AAAATCATTTTCAAGGTGATCCGATCACATCTCAATAAAA
7590756 GATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGTCCCCTTTTTTTTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGTCCCCTTTTTTTTCAATAAAAAATGGTTT
7590821 CAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTTGACAATAGAGGAA
66 CAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTTGACAATAGAGGAA
7590886 TCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTTGGAAAATGATAGG
131 TCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTTGGAAAATGATAGG
7590951 AATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAATGGAAGAATTGGGAGAACAAAGGGATGGC
196 AATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAATGGAAGAATTGGGAGAACAAAGGGATGGC
7591016 AAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGGTTTTTAGTTTAGA
261 AAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGGTTTTTAGTTTAGA
7591081 TTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTCTTTTATAAATTAGTCCT
326 TTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTCTTTTATAAATTAGTCCT
* *
7591146 ATTTTTAAAATTATAGGTTTCTCAAACACCGACTCTCGAACCTATTTTCTCAAATTTCGCAGACC
391 ATTTTTAAAATTATAGGTTTCTAAAACACCGACTCCCGAACCTATTTTCTCAAATTTCGCAGACC
7591211 AAAATCATTTTCAAGGTGATCCGATCACATCTCAATAAAA
456 AAAATCATTTTCAAGGTGATCCGATCACATCTCAATAAAA
7591251 GATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGTCCCCTTTTTTTTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGTCCCCTTTTTTTTCAATAAAAAATGGTTT
7591316 CAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTTGACAATAGAGGAA
66 CAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTTGACAATAGAGGAA
7591381 TCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTTGGAAAATGATAGG
131 TCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTTGGAAAATGATAGG
*
7591446 AATCAAATGAATTTAAGTTTGGCAAAGAAAATTGAATGGAAGAATTGGGAGAACAAAGGGATGGC
196 AATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAATGGAAGAATTGGGAGAACAAAGGGATGGC
7591511 AAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGGTTTTTAGTTTAGA
261 AAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGGTTTTTAGTTTAGA
7591576 TTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTCTTTTATAAATTAGTCCT
326 TTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTCTTTTATAAATTAGTCCT
7591641 ATTTTTAAAATTATAGGTTTCTAAAACACCGACTCCCGAACCTATTTTCTCAAATTTCGCAGACC
391 ATTTTTAAAATTATAGGTTTCTAAAACACCGACTCCCGAACCTATTTTCTCAAATTTCGCAGACC
7591706 AAAATCATTTTCAAGGTGATCCGATCACATCTCAATAAAA
456 AAAATCATTTTCAAGGTGATCCGATCACATCTCAATAAAA
7591746 GATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGTCCCCTTTTTTTTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGTCCCCTTTTTTTTCAATAAAAAATGGTTT
7591811 CAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTTGACAATAGAGGAA
66 CAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTTGACAATAGAGGAA
7591876 TCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTTGGAAAATGATAGG
131 TCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTTGGAAAATGATAGG
*
7591941 AATCAAATGAATTTAAGTTTGGCAAAGAAAATTGAATGGAAGAATTGGGAGAACAAAGGGATGGC
196 AATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAATGGAAGAATTGGGAGAACAAAGGGATGGC
7592006 AAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGGTTTTTAGTTTAGA
261 AAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGGTTTTTAGTTTAGA
7592071 TTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTCTTTTATAAATTAGTCCT
326 TTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTCTTTTATAAATTAGTCCT
*
7592136 ATTTTTAAAATTATAGGTTTCTAAAACACCGACTCCCGAACCTATTTTCTCAAATTTCGTAGACC
391 ATTTTTAAAATTATAGGTTTCTAAAACACCGACTCCCGAACCTATTTTCTCAAATTTCGCAGACC
*
7592201 AAAATCATTTGCAAGGTGATCCGATCACATCTCAATAAAA
456 AAAATCATTTTCAAGGTGATCCGATCACATCTCAATAAAA
* *
7592241 GATCGGTGGCGATTTCTATTTTATTTTCAAAGTCGGTCCCCCTTTTTTTTTCAATAAAAAATGGT
1 GATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGT-CCCC-TTTTTTTTCAATAAAAAATGGT
*
7592306 TTCAACAAATGAAAACCAAACGTTTGATCGAAAACCCAACAAACCAACAAGCTTGACAATAGAGG
64 TTCAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTTGACAATAGAGG
7592371 AATCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTTGGAAAATGATA
129 AATCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTTGGAAAATGATA
*
7592436 GGAATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAATGGAAGAATTAGGAGAACAAAGGGATG
194 GGAATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAATGGAAGAATTGGGAGAACAAAGGGATG
*
7592501 GCAAGAACAAATTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGGTTTTTAGTTTA
259 GCAAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGGTTTTTAGTTTA
7592566 GATTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTCTTTTATAAATTAGTC
324 GATTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTCTTTTATAAATTAGTC
*
7592631 CTATTTTTAAAATTATAGGTTTCTAAAACACCGACTCCCGAACCTATTTTCTCAAATTTCGCAAA
389 CTATTTTTAAAATTATAGGTTTCTAAAACACCGACTCCCGAACCTATTTTCTCAAATTTCGCAGA
*
7592696 CCAAAATCATTTTAAAGGTGATCCGATCACATCTCAATAAAA
454 CCAAAATCATTTTCAAGGTGATCCGATCACATCTCAATAAAA
* *
7592738 GATCGGTGACGATTTCCATTTTATTTTCAAAGTCGGTCCCC-TTTTTTTCAATAAAAAATGGTTT
1 GATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGTCCCCTTTTTTTTCAATAAAAAATGGTTT
* *
7592802 CTACAAATGAAAACCAAACGTTTGATCGAAAACCCAACAAACCAACAAGCTTGACAATAGAGGAA
66 CAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTTGACAATAGAGGAA
7592867 TCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTTGGAAAATGATAGG
131 TCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTTGGAAAATGATAGG
*
7592932 AATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAATGGAAGAATTAGGAGAACAAAGGGATGGC
196 AATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAATGGAAGAATTGGGAGAACAAAGGGATGGC
*
7592997 AAGAACAAGTTATCAAGAAGAACAAACGTGAAAATAAAACTATAAATGGGGGTTTTTAGTTTAGA
261 AAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGGTTTTTAGTTTAGA
7593062 TTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTCTTTTACT-AATTAGTCC
326 TTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTCTTTTA-TAAATTAGTCC
7593126 TATTTTTAAAATTATAGGTTTCTAAAACAC
390 TATTTTTAAAATTATAGGTTTCTAAAACAC
7593156 TTTTTCAAAA
Statistics
Matches: 2372, Mismatches: 25, Indels: 7
0.99 0.01 0.00
Matches are distributed among these distances:
494 372 0.16
495 1511 0.64
496 8 0.00
497 481 0.20
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (495 bp):
GATCGGTGGCGATTTCCATATTATTTTCAAAGTCGGTCCCCTTTTTTTTCAATAAAAAATGGTTT
CAACAAATGAAAACCAAACGTTTGATCGAAAACCCAAAAAACCAACAAGCTTGACAATAGAGGAA
TCTATGGTGTTTTTGGGTGTTTTTCTTGGATTTTATGGAGGTTTAATTATTTGGAAAATGATAGG
AATCAAAGGAATTTAAGTTTGGCAAAGAAAATTGAATGGAAGAATTGGGAGAACAAAGGGATGGC
AAGAACAAGTTATCAAGAAGAACTAACGTGAAAATAAAACTATAAATGGGGGTTTTTAGTTTAGA
TTTTAAAATCTGGTCTAATTGCCTCTTAAAAACTCTGAGTTTGGACTCTTTTATAAATTAGTCCT
ATTTTTAAAATTATAGGTTTCTAAAACACCGACTCCCGAACCTATTTTCTCAAATTTCGCAGACC
AAAATCATTTTCAAGGTGATCCGATCACATCTCAATAAAA
Found at i:7593952 original size:39 final size:39
Alignment explanation
Indices: 7593883--7594023 Score: 176
Period size: 39 Copynumber: 3.6 Consensus size: 39
7593873 AACATGTTTT
*
7593883 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTACA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTACA
* * * *
7593922 TTAGTGTTGAT-ATATATGCTTAAATATTATGTGATTATA
1 TGAGTATTG-TGATATATGCTTAAATGTTATGTGATTACA
* *
7593961 TGAGTATTGTGATATATGCTTAAATGTTATATGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTACA
* **
7594000 TGTGTAACGTGATATATGCTTAAA
1 TGAGTATTGTGATATATGCTTAAA
7594024 AGTGAATATG
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 86 0.98
40 1 0.01
ACGTcount: A:0.32, C:0.04, G:0.19, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTACA
Found at i:7596746 original size:161 final size:161
Alignment explanation
Indices: 7596481--7596795 Score: 603
Period size: 161 Copynumber: 2.0 Consensus size: 161
7596471 AATTAGTAGA
7596481 TAATTATAATGACTCATTCATGGAAATTCAAGAAAAGAAAATGATGAAATTGGAAAGTTGAAAAA
1 TAATTATAATGACTCATTCATGGAAATTCAAGAAAAGAAAATGATGAAATTGGAAAGTTGAAAAA
7596546 TTAAAAGATGATAAGTTAATTAATTGAATAAAATAATTTTATTTCATCATCTTCCCCAAATTTTC
66 TTAAAAGATGATAAGTTAATTAATTGAATAAAATAATTTTATTTCATCATCTTCCCCAAATTTTC
*
7596611 TATGAAAAACCTAGCTAAGAGAAACCCTAGC
131 TATGAAAAACCTAACTAAGAGAAACCCTAGC
7596642 TAATTATAATGACTCATTCATGGAAATTCAAGAAAAGAAAATGATGAAATTGGAAAGTTGAAAAA
1 TAATTATAATGACTCATTCATGGAAATTCAAGAAAAGAAAATGATGAAATTGGAAAGTTGAAAAA
7596707 TTAAAAGATGATAAGTTAATTAATTGAATAAAATAATTTTATTTCATCATCTTCCCCAAATTTTC
66 TTAAAAGATGATAAGTTAATTAATTGAATAAAATAATTTTATTTCATCATCTTCCCCAAATTTTC
* *
7596772 TATGAAAATCGTAACTAAGAGAAA
131 TATGAAAAACCTAACTAAGAGAAA
7596796 GAAATTCAAG
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
161 151 1.00
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.31
Consensus pattern (161 bp):
TAATTATAATGACTCATTCATGGAAATTCAAGAAAAGAAAATGATGAAATTGGAAAGTTGAAAAA
TTAAAAGATGATAAGTTAATTAATTGAATAAAATAATTTTATTTCATCATCTTCCCCAAATTTTC
TATGAAAAACCTAACTAAGAGAAACCCTAGC
Found at i:7597048 original size:12 final size:12
Alignment explanation
Indices: 7597031--7597056 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7597021 ATTAAATTGA
7597031 ATGTGTATATTT
1 ATGTGTATATTT
7597043 ATGTGTATATTT
1 ATGTGTATATTT
7597055 AT
1 AT
7597057 ATGATTGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (12 bp):
ATGTGTATATTT
Found at i:7597498 original size:24 final size:25
Alignment explanation
Indices: 7597458--7597506 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
7597448 CTCGCTTAAA
*
7597458 CTTCCTGATATATAGCTATTCGGAG
1 CTTCCTAATATATAGCTATTCGGAG
*
7597483 CTTCCTAATA-ATAGCTCTTCGGAG
1 CTTCCTAATATATAGCTATTCGGAG
7597507 TTACCCGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.35
Consensus pattern (25 bp):
CTTCCTAATATATAGCTATTCGGAG
Found at i:7597652 original size:27 final size:27
Alignment explanation
Indices: 7597575--7597653 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 27
7597565 GCCTGGATAA
* *
7597575 GCTTCCTGTTACATGGCTC-ACATGA--
1 GCTTCCTGTTATATGGCTCGA-AAGAGT
*
7597600 GCTTCCTGTTATATGGCTCGAGAGAGT
1 GCTTCCTGTTATATGGCTCGAAAGAGT
* *
7597627 GCTTCCTGAT-TATGTGCTCTAAAGAGT
1 GCTTCCTGTTATATG-GCTCGAAAGAGT
7597654 ACCCTTGAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
25 20 0.45
26 5 0.11
27 19 0.43
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (27 bp):
GCTTCCTGTTATATGGCTCGAAAGAGT
Found at i:7602010 original size:18 final size:18
Alignment explanation
Indices: 7601983--7602023 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
7601973 AATTGGCTTA
7601983 AAAAAGTA-TTATGAAAACT
1 AAAAAGTATTTAT-AAAA-T
7602002 AAAAA-TATTTATAAAAT
1 AAAAAGTATTTATAAAAT
7602019 AAAAA
1 AAAAA
7602024 ATAAAAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.29
18 6 0.29
19 9 0.43
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (18 bp):
AAAAAGTATTTATAAAAT
Found at i:7602024 original size:18 final size:19
Alignment explanation
Indices: 7601981--7602026 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
7601971 ATAATTGGCT
7601981 TAAAAAAGTATTATGAAAAC
1 TAAAAAA-TATTATGAAAAC
7602001 T-AAAAATATTTAT-AAAA-
1 TAAAAAATA-TTATGAAAAC
7602018 TAAAAAATA
1 TAAAAAATA
7602027 AAAAAAGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
17 1 0.04
18 13 0.54
19 9 0.38
20 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.28
Consensus pattern (19 bp):
TAAAAAATATTATGAAAAC
Found at i:7602048 original size:20 final size:20
Alignment explanation
Indices: 7602020--7602057 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7602010 TTATAAAATA
7602020 AAAAATAAAAAAAGTAAACC
1 AAAAATAAAAAAAGTAAACC
* *
7602040 AAAAGTAAAAAAATTAAA
1 AAAAATAAAAAAAGTAAA
7602058 GAAAGAAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.13
Consensus pattern (20 bp):
AAAAATAAAAAAAGTAAACC
Found at i:7602355 original size:2 final size:2
Alignment explanation
Indices: 7602350--7602375 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7602340 TTTTTGTTTA
7602350 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7602376 GATAACATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7607787 original size:21 final size:21
Alignment explanation
Indices: 7607763--7607812 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
7607753 TTTATAAATA
7607763 TATTAATTTAATCAAAA-ATTT
1 TATTAATTT-ATCAAAATATTT
* *
7607784 TATTAAATTATTAAAATATTT
1 TATTAATTTATCAAAATATTT
7607805 TATTAATT
1 TATTAATT
7607813 ATACAAGTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
TATTAATTTATCAAAATATTT
Found at i:7607799 original size:20 final size:20
Alignment explanation
Indices: 7607776--7607814 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
7607766 TAATTTAATC
7607776 AAAA-ATTTTATTAAATTATT
1 AAAATATTTTATT-AATTATT
7607796 AAAATATTTTATTAATTAT
1 AAAATATTTTATTAATTAT
7607815 ACAAGTGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AAAATATTTTATTAATTATT
Found at i:7608364 original size:18 final size:18
Alignment explanation
Indices: 7608341--7608376 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7608331 AATCACTTTT
7608341 CCAAATACCTCACTTACA
1 CCAAATACCTCACTTACA
7608359 CCAAATACCTCACTTACA
1 CCAAATACCTCACTTACA
7608377 ATCAATGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.22
Consensus pattern (18 bp):
CCAAATACCTCACTTACA
Found at i:7614583 original size:13 final size:13
Alignment explanation
Indices: 7614567--7614600 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
7614557 ATTTAAAGAC
* *
7614567 TAAAAATATTAAA
1 TAAAAAAATAAAA
7614580 TAAAAAAATAAAA
1 TAAAAAAATAAAA
7614593 TAAAAAAA
1 TAAAAAAA
7614601 CTTTTTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
TAAAAAAATAAAA
Found at i:7618471 original size:16 final size:15
Alignment explanation
Indices: 7618452--7618486 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
7618442 ATAATTTTTA
7618452 ATATATGTAATTGATT
1 ATATATGTAATT-ATT
*
7618468 ATATATGTTATTATT
1 ATATATGTAATTATT
7618483 ATAT
1 ATAT
7618487 TTATTTACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (15 bp):
ATATATGTAATTATT
Found at i:7619706 original size:59 final size:60
Alignment explanation
Indices: 7619602--7619727 Score: 182
Period size: 59 Copynumber: 2.1 Consensus size: 60
7619592 ATATTTATCC
* * *
7619602 ATTTTCATTTTCGTTTTAGAGAAAAACCACATTTCATTTCTAAATGTTTCTCATTTTTCA
1 ATTTTCATTTTCATTTTAGAGAAAAACCACATTTCATTTCCAAATGTTTCTCATTTCTCA
* * * *
7619662 ATTTTTATTTTCATTTTGGAG-AAAACCACATTTTATTTCCAAATGTTTCTCATTTCTCT
1 ATTTTCATTTTCATTTTAGAGAAAAACCACATTTCATTTCCAAATGTTTCTCATTTCTCA
7619721 ATTTTCA
1 ATTTTCA
7619728 CAATTTCTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
59 40 0.69
60 18 0.31
ACGTcount: A:0.27, C:0.17, G:0.06, T:0.50
Consensus pattern (60 bp):
ATTTTCATTTTCATTTTAGAGAAAAACCACATTTCATTTCCAAATGTTTCTCATTTCTCA
Found at i:7622420 original size:25 final size:23
Alignment explanation
Indices: 7622385--7622446 Score: 63
Period size: 26 Copynumber: 2.5 Consensus size: 23
7622375 TTAGAGGAAG
7622385 TAAAACTGAAAATTAAGCT-TCTTTT
1 TAAAA-TGAAAATTAA-CTAT-TTTT
7622410 ATAAAATGAAAAAATTAACTATTTTT
1 -TAAAATG--AAAATTAACTATTTTT
7622436 TAAAATGAAAA
1 TAAAATGAAAA
7622447 AAAAGGAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
23 4 0.12
25 9 0.27
26 11 0.33
27 9 0.27
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (23 bp):
TAAAATGAAAATTAACTATTTTT
Found at i:7622450 original size:27 final size:27
Alignment explanation
Indices: 7622393--7622448 Score: 82
Period size: 25 Copynumber: 2.1 Consensus size: 27
7622383 AGTAAAACTG
7622393 AAAATTAAGCTTCTTTTATAAAATGAA
1 AAAATTAAGCTTCTTTTATAAAATGAA
7622420 AAAATTAA-CTAT-TTTT-TAAAATGAA
1 AAAATTAAGCT-TCTTTTATAAAATGAA
7622445 AAAA
1 AAAA
7622449 AAGGAAGAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 13 0.46
26 6 0.21
27 9 0.32
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (27 bp):
AAAATTAAGCTTCTTTTATAAAATGAA
Found at i:7627412 original size:24 final size:24
Alignment explanation
Indices: 7627367--7627421 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
7627357 AAGATTTAGT
**
7627367 ATTTATTAGCATAGTATATTTGAC
1 ATTTATTAGCATAAAATATTTGAC
* **
7627391 ATTTATTAGCATAAAATCTTTGTT
1 ATTTATTAGCATAAAATATTTGAC
7627415 ATTTATT
1 ATTTATT
7627422 TCTATATTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.51
Consensus pattern (24 bp):
ATTTATTAGCATAAAATATTTGAC
Found at i:7632692 original size:24 final size:24
Alignment explanation
Indices: 7632665--7632712 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
7632655 TCCACATCGA
7632665 ATAAATCGACTCAATTAAATTATT
1 ATAAATCGACTCAATTAAATTATT
7632689 ATAAATCGACTCAATTAAATTATT
1 ATAAATCGACTCAATTAAATTATT
7632713 TTCAAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (24 bp):
ATAAATCGACTCAATTAAATTATT
Found at i:7635101 original size:21 final size:20
Alignment explanation
Indices: 7635076--7635130 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
7635066 TATCTTTAAA
*
7635076 TTGTTAGAGATTGTTATCCTT
1 TTGTTAGAGATTGTT-TCATT
* *
7635097 TTGTTTGAGATTGTTTTATT
1 TTGTTAGAGATTGTTTCATT
*
7635117 TTGTTAGAGTTTGT
1 TTGTTAGAGATTGT
7635131 ACAAAGTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.52
21 14 0.48
ACGTcount: A:0.16, C:0.04, G:0.22, T:0.58
Consensus pattern (20 bp):
TTGTTAGAGATTGTTTCATT
Found at i:7641618 original size:29 final size:29
Alignment explanation
Indices: 7641568--7641666 Score: 128
Period size: 29 Copynumber: 3.4 Consensus size: 29
7641558 TTCGTAGTTA
7641568 GACTGT-TCGCCACTTTGGCTTGTACTTTG
1 GACTGTCT-GCCACTTTGGCTTGTACTTTG
* *
7641597 GATTGTCTGCCACTTTGGCTTGCACTTTG
1 GACTGTCTGCCACTTTGGCTTGTACTTTG
* * *
7641626 AACTGCCTGCCACTTTGGCTTGTATTTTG
1 GACTGTCTGCCACTTTGGCTTGTACTTTG
*
7641655 GACTGTCCGCCA
1 GACTGTCTGCCA
7641667 AATAGTTCAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
29 58 0.98
30 1 0.02
ACGTcount: A:0.12, C:0.26, G:0.23, T:0.38
Consensus pattern (29 bp):
GACTGTCTGCCACTTTGGCTTGTACTTTG
Found at i:7646563 original size:11 final size:11
Alignment explanation
Indices: 7646549--7646583 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7646539 TAAATAAAGA
7646549 AATAATAAAAT
1 AATAATAAAAT
*
7646560 AATAAGAAAAT
1 AATAATAAAAT
*
7646571 AATAATATAAT
1 AATAATAAAAT
7646582 AA
1 AA
7646584 CGATAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:7646847 original size:21 final size:19
Alignment explanation
Indices: 7646816--7646854 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
7646806 AATTACAAGC
*
7646816 ATAAATTATAATAAAACAA
1 ATAAATTATAAGAAAACAA
7646835 ATAAATTAAATAAGAAAACA
1 ATAAATT--ATAAGAAAACA
7646855 TAAATAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
21 10 0.59
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (19 bp):
ATAAATTATAAGAAAACAA
Found at i:7646857 original size:19 final size:20
Alignment explanation
Indices: 7646810--7646859 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 20
7646800 AAACAAAATT
7646810 ACAAGCATAAATTATAATAAA
1 ACAA-CATAAATTATAATAAA
7646831 ACAA-ATAAATTA-AATAAGA
1 ACAACATAAATTATAATAA-A
7646850 A-AACATAAAT
1 ACAACATAAAT
7646860 AAGGACCCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 7 0.26
19 16 0.59
21 4 0.15
ACGTcount: A:0.66, C:0.08, G:0.04, T:0.22
Consensus pattern (20 bp):
ACAACATAAATTATAATAAA
Found at i:7651362 original size:29 final size:29
Alignment explanation
Indices: 7651301--7651435 Score: 101
Period size: 29 Copynumber: 4.7 Consensus size: 29
7651291 TAGACTGTCT
* * * *
7651301 ACCACTTTGGCTTATAC-TTGGATTGTTC
1 ACCACTTTGGCTTGTACTTTGGACTATCC
*
7651329 GCCACTTTGGCTTGTACTTTGGACTATCC
1 ACCACTTTGGCTTGTACTTTGGACTATCC
* * ** *
7651358 ACCACTTTGGCTTGCACTTTGGAATGGCT
1 ACCACTTTGGCTTGTACTTTGGACTATCC
* * ** *
7651387 ATCACTTTGACTTACACTTTGGACTACCC
1 ACCACTTTGGCTTGTACTTTGGACTATCC
* * *
7651416 ACCACTCTAGATTGTACTTT
1 ACCACTTTGGCTTGTACTTT
7651436 AGATTTTCCG
Statistics
Matches: 81, Mismatches: 25, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
28 15 0.19
29 66 0.81
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (29 bp):
ACCACTTTGGCTTGTACTTTGGACTATCC
Found at i:7652086 original size:222 final size:222
Alignment explanation
Indices: 7651700--7652147 Score: 824
Period size: 222 Copynumber: 2.0 Consensus size: 222
7651690 GAAAATTTTT
7651700 ACTCCATTCTATTTAGGATTTCTCACTAAAAATAGTTCATCATATACCAATCCTTACTTTTATTG
1 ACTCCATTCTATTTAGGATTTCTCACTAAAAATAGTTCATCATATACCAATCCTTACTTTTATTG
*
7651765 ACGATCCAATTCTGTAAGTATAAGTAGGTTTCTATCAACGGATTACTTATCCATTAGTAAATGAT
66 ACAATCCAATTCTGTAAGTATAAGTAGGTTTCTATCAACGGATTACTTATCCATTAGTAAATGAT
* *
7651830 GAACCTATCCCAACACATCCTATTTGTGACGCCCCACACCTGATTTAGTCATTGGCTCTAAATGT
131 GAACCTATCCCAACACATCCTATTTGTGACGCCCCACACATGAGTTAGTCATTGGCTCTAAATGT
7651895 GTAACATCACATTATGTTTTCGAAACA
196 GTAACATCACATTATGTTTTCGAAACA
* * *
7651922 ACTCCATTCTATTTAGGATTTCTTACTACAAATAGTTCATCATATACCAATGCTTACTTTTATTG
1 ACTCCATTCTATTTAGGATTTCTCACTAAAAATAGTTCATCATATACCAATCCTTACTTTTATTG
* *
7651987 ACAATCCAATTCTGTAAGTATAAGTAGGTTTCTATCAACGGATTACTTATCCGTTAGTATATGAT
66 ACAATCCAATTCTGTAAGTATAAGTAGGTTTCTATCAACGGATTACTTATCCATTAGTAAATGAT
7652052 GAACCTATCCCAACACATCCTATTTGTGACGCCCCACACATGAGTTAGTCATTGGCTCTAAATGT
131 GAACCTATCCCAACACATCCTATTTGTGACGCCCCACACATGAGTTAGTCATTGGCTCTAAATGT
7652117 GTAACATCACATTATGTTTTCGAAACA
196 GTAACATCACATTATGTTTTCGAAACA
7652144 ACTC
1 ACTC
7652148 AGAATATTTC
Statistics
Matches: 218, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
222 218 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (222 bp):
ACTCCATTCTATTTAGGATTTCTCACTAAAAATAGTTCATCATATACCAATCCTTACTTTTATTG
ACAATCCAATTCTGTAAGTATAAGTAGGTTTCTATCAACGGATTACTTATCCATTAGTAAATGAT
GAACCTATCCCAACACATCCTATTTGTGACGCCCCACACATGAGTTAGTCATTGGCTCTAAATGT
GTAACATCACATTATGTTTTCGAAACA
Found at i:7652566 original size:21 final size:21
Alignment explanation
Indices: 7652521--7652566 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
7652511 TGTTTGAATG
* * *
7652521 TCTCGAGACAAGGGGTTCATT
1 TCTCAAGAAAAGGGGTTCATA
*
7652542 TCTCAAGAAAAGGGGTTCCTA
1 TCTCAAGAAAAGGGGTTCATA
7652563 TCTC
1 TCTC
7652567 GAGGCCTGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (21 bp):
TCTCAAGAAAAGGGGTTCATA
Found at i:7654284 original size:27 final size:27
Alignment explanation
Indices: 7654254--7654305 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
7654244 AAAAATTGTT
*
7654254 AAAACTCTTCTAAAAGAA-AACTCAAGA
1 AAAACTCTT-GAAAAGAACAACTCAAGA
*
7654281 AAAATTCTTGAAAAGAACAACTCAA
1 AAAACTCTTGAAAAGAACAACTCAA
7654306 AGAGAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.56, C:0.17, G:0.08, T:0.19
Consensus pattern (27 bp):
AAAACTCTTGAAAAGAACAACTCAAGA
Found at i:7668756 original size:17 final size:17
Alignment explanation
Indices: 7668734--7668767 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7668724 TATCACTTGC
*
7668734 TATTTCAATAGCATTTT
1 TATTTCAATAACATTTT
7668751 TATTTCAATAACATTTT
1 TATTTCAATAACATTTT
7668768 CCATTTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.12, G:0.03, T:0.53
Consensus pattern (17 bp):
TATTTCAATAACATTTT
Found at i:7668775 original size:18 final size:17
Alignment explanation
Indices: 7668735--7668776 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
7668725 ATCACTTGCT
* *
7668735 ATTTCAATAGCATTTTT
1 ATTTCAATAACATTTTC
7668752 ATTTCAATAACATTTTCC
1 ATTTCAATAACATTTT-C
7668770 ATTTCAA
1 ATTTCAA
7668777 AATCAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.33, C:0.17, G:0.02, T:0.48
Consensus pattern (17 bp):
ATTTCAATAACATTTTC
Found at i:7670072 original size:11 final size:11
Alignment explanation
Indices: 7670052--7670086 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7670042 AATAAGTCCC
*
7670052 TTTACCTATAA
1 TTTACTTATAA
7670063 TTTACTTATAA
1 TTTACTTATAA
*
7670074 TTTAATTATAA
1 TTTACTTATAA
7670085 TT
1 TT
7670087 AAGCTTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTACTTATAA
Found at i:7673608 original size:30 final size:30
Alignment explanation
Indices: 7673570--7673647 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 30
7673560 ATGGGTGAAT
7673570 AAGTTGCTCACACAAGCTGACATTATATCA
1 AAGTTGCTCACACAAGCTGACATTATATCA
** * * * *
7673600 GGGTTGCTCATACAAGCTGTCTTTTTATCA
1 AAGTTGCTCACACAAGCTGACATTATATCA
*
7673630 AAGTTTCTCACACAAGCT
1 AAGTTGCTCACACAAGCT
7673648 AACTTATGTT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.32
Consensus pattern (30 bp):
AAGTTGCTCACACAAGCTGACATTATATCA
Found at i:7675936 original size:5 final size:5
Alignment explanation
Indices: 7675926--7675973 Score: 87
Period size: 5 Copynumber: 9.6 Consensus size: 5
7675916 TTTTTATGCT
*
7675926 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTGTA TTATA TTA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTA
7675974 AAAAAAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:7676794 original size:3 final size:3
Alignment explanation
Indices: 7676786--7676820 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
7676776 AATAAAAATT
* *
7676786 TTA TTA TTA TTG TTA TTA TAA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7676821 TTAATGATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:7676811 original size:18 final size:18
Alignment explanation
Indices: 7676788--7676836 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
7676778 TAAAAATTTT
*
7676788 ATTATTATTGTTATTATA
1 ATTATTATTATTATTATA
*
7676806 ATTATTATTATTATTTTA
1 ATTATTATTATTATTATA
* *
7676824 ATGATTATAATTA
1 ATTATTATTATTA
7676837 AAAGTGAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (18 bp):
ATTATTATTATTATTATA
Found at i:7676834 original size:9 final size:9
Alignment explanation
Indices: 7676788--7676836 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
7676778 TAAAAATTTT
*
7676788 ATTATTATT
1 ATTATTATA
*
7676797 GTTATTATA
1 ATTATTATA
*
7676806 ATTATTATT
1 ATTATTATA
*
7676815 ATTATTTTA
1 ATTATTATA
*
7676824 ATGATTATA
1 ATTATTATA
7676833 ATTA
1 ATTA
7676837 AAAGTGAAAA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (9 bp):
ATTATTATA
Found at i:7683384 original size:5 final size:5
Alignment explanation
Indices: 7683374--7683416 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
7683364 TTTTTATGCT
7683374 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTA
7683417 AAAAAAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:7684253 original size:18 final size:18
Alignment explanation
Indices: 7684230--7684279 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
7684220 TAAAAATTTT
*
7684230 ATTATTATTGTTAATATA
1 ATTATTATTATTAATATA
*
7684248 ATTATTATTATTATTATA
1 ATTATTATTATTAATATA
* *
7684266 ATGATTATAATTAA
1 ATTATTATTATTAA
7684280 AAGTGAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (18 bp):
ATTATTATTATTAATATA
Found at i:7684262 original size:9 final size:9
Alignment explanation
Indices: 7684230--7684278 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
7684220 TAAAAATTTT
*
7684230 ATTATTATT
1 ATTATTATA
* *
7684239 GTTAATATA
1 ATTATTATA
*
7684248 ATTATTATT
1 ATTATTATA
7684257 ATTATTATA
1 ATTATTATA
*
7684266 ATGATTATA
1 ATTATTATA
7684275 ATTA
1 ATTA
7684279 AAAGTGAAAA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (9 bp):
ATTATTATA
Found at i:7691331 original size:36 final size:35
Alignment explanation
Indices: 7691288--7691358 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 35
7691278 GGGTGGCAGC
7691288 AATGAAGTTGCGATTTGATGATGTATGAATG-TAATG
1 AATGAAGTTGCGATTTGATGATG-ATG-ATGTTAATG
*
7691324 AATGAAGTTGTGATTTGATGATGATGATGTTAATG
1 AATGAAGTTGCGATTTGATGATGATGATGTTAATG
7691359 TAATCAATGG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
34 3 0.09
35 8 0.24
36 22 0.67
ACGTcount: A:0.32, C:0.01, G:0.28, T:0.38
Consensus pattern (35 bp):
AATGAAGTTGCGATTTGATGATGATGATGTTAATG
Found at i:7692230 original size:13 final size:13
Alignment explanation
Indices: 7692212--7692238 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7692202 GTCACATTAC
7692212 GAATAACATTGTA
1 GAATAACATTGTA
7692225 GAATAACATTGTA
1 GAATAACATTGTA
7692238 G
1 G
7692239 TGGCTTAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (13 bp):
GAATAACATTGTA
Found at i:7696375 original size:7 final size:7
Alignment explanation
Indices: 7696365--7696422 Score: 80
Period size: 7 Copynumber: 7.9 Consensus size: 7
7696355 CAATAATATG
7696365 TATAATA
1 TATAATA
7696372 TATAATA
1 TATAATA
7696379 TATAATA
1 TATAATA
7696386 TATAATA
1 TATAATA
7696393 TATAATA
1 TATAATA
7696400 TTATGTAATA
1 -TA--TAATA
7696410 TATAATA
1 TATAATA
*
7696417 GATAAT
1 TATAAT
7696423 GTACTGTTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
7 38 0.81
8 2 0.04
9 2 0.04
10 5 0.11
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (7 bp):
TATAATA
Found at i:7697044 original size:30 final size:30
Alignment explanation
Indices: 7697005--7697078 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
7696995 GAAAAACCTT
* *
7697005 GAGGGAATCAAGGGAACG-ACACTTATAGGG
1 GAGGAAATCAAGGGAACGAAAAC-TATAGGG
7697035 GAGGAAATCAAGGG-ACGAAAACTATAGGG
1 GAGGAAATCAAGGGAACGAAAACTATAGGG
* *
7697064 GAGAAAATTAAGGGA
1 GAGGAAATCAAGGGA
7697079 TTTCAATGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
29 22 0.58
30 16 0.42
ACGTcount: A:0.43, C:0.09, G:0.35, T:0.12
Consensus pattern (30 bp):
GAGGAAATCAAGGGAACGAAAACTATAGGG
Found at i:7701662 original size:16 final size:16
Alignment explanation
Indices: 7701641--7701674 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7701631 TTTAATTTGT
7701641 TTTATCCTTTTTCGAA
1 TTTATCCTTTTTCGAA
* *
7701657 TTTATCTTTTTTCTAA
1 TTTATCCTTTTTCGAA
7701673 TT
1 TT
7701675 GTTCAGTCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.15, G:0.03, T:0.65
Consensus pattern (16 bp):
TTTATCCTTTTTCGAA
Found at i:7714963 original size:17 final size:16
Alignment explanation
Indices: 7714941--7715011 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
7714931 TTAAAAACTT
7714941 AAATTTTTGAAAGCTA
1 AAATTTTTGAAAGCTA
*
7714957 GAAATTTTTTAAAGCTA
1 -AAATTTTTGAAAGCTA
** *
7714974 AAATTTTTGAAATTTT
1 AAATTTTTGAAAGCTA
*
7714990 AAATTTTTGAAAGCTC
1 AAATTTTTGAAAGCTA
7715006 AAATTT
1 AAATTT
7715012 GATTTGTTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
16 31 0.67
17 15 0.33
ACGTcount: A:0.41, C:0.06, G:0.10, T:0.44
Consensus pattern (16 bp):
AAATTTTTGAAAGCTA
Found at i:7716737 original size:11 final size:11
Alignment explanation
Indices: 7716721--7716751 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
7716711 ACCATTTAAA
7716721 GAATTTTATAT
1 GAATTTTATAT
7716732 GAATTTTATAT
1 GAATTTTATAT
7716743 GAATTTTAT
1 GAATTTTAT
7716752 GAGTATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (11 bp):
GAATTTTATAT
Found at i:7718506 original size:16 final size:16
Alignment explanation
Indices: 7718487--7718583 Score: 92
Period size: 16 Copynumber: 6.1 Consensus size: 16
7718477 ACTTGATTTG
*
7718487 TTTTAAAAACTTAAAT
1 TTTTGAAAACTTAAAT
* *
7718503 TTTTGAAAGCTAGAAACT
1 TTTTGAAAACT-TAAA-T
* **
7718521 TTTT-AAAGCAAAAAT
1 TTTTGAAAACTTAAAT
7718536 TTTTGAAAACTTAAA-
1 TTTTGAAAACTTAAAT
*
7718551 TTTTGAAAA-ATAAAT
1 TTTTGAAAACTTAAAT
7718566 TTTTGAAAACTTAAAT
1 TTTTGAAAACTTAAAT
7718582 TT
1 TT
7718584 GATTTGTTTT
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
14 4 0.06
15 23 0.35
16 26 0.39
17 8 0.12
18 5 0.08
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.40
Consensus pattern (16 bp):
TTTTGAAAACTTAAAT
Found at i:7718585 original size:14 final size:15
Alignment explanation
Indices: 7718536--7718583 Score: 71
Period size: 15 Copynumber: 3.2 Consensus size: 15
7718526 AAGCAAAAAT
7718536 TTTTGAAAACTTAAA
1 TTTTGAAAACTTAAA
*
7718551 TTTTGAAAA-ATAAA
1 TTTTGAAAACTTAAA
7718565 TTTTTGAAAACTTAAA
1 -TTTTGAAAACTTAAA
7718581 TTT
1 TTT
7718584 GATTTGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 4 0.14
15 21 0.72
16 4 0.14
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (15 bp):
TTTTGAAAACTTAAA
Found at i:7718914 original size:23 final size:23
Alignment explanation
Indices: 7718880--7718961 Score: 94
Period size: 23 Copynumber: 3.6 Consensus size: 23
7718870 TTGTATTTTT
* *
7718880 TAGAGAACCTTCAATGTTAATCG
1 TAGAGAATCTTCAATGTTCATCG
* *
7718903 TAGAGAATCTTCATTGTTCATTG
1 TAGAGAATCTTCAATGTTCATCG
* *
7718926 TAGAAAATTTTCACA-GTTCATCG
1 TAGAGAATCTTCA-ATGTTCATCG
7718949 TAGAGAATCTTCA
1 TAGAGAATCTTCA
7718962 TTATTCACTG
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (23 bp):
TAGAGAATCTTCAATGTTCATCG
Found at i:7726122 original size:16 final size:16
Alignment explanation
Indices: 7726079--7726139 Score: 70
Period size: 16 Copynumber: 3.9 Consensus size: 16
7726069 ATACCAAGTT
* *
7726079 CATAGGTGTTTGCATT
1 CATAAGTGTTTGCATA
*
7726095 CCTAAG-GTTTGCATA
1 CATAAGTGTTTGCATA
7726110 CATAAGTGTTTGCATA
1 CATAAGTGTTTGCATA
* *
7726126 CATTAGGGTTTGCA
1 CATAAGTGTTTGCA
7726140 CATATATAGT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
15 13 0.34
16 25 0.66
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (16 bp):
CATAAGTGTTTGCATA
Found at i:7726213 original size:22 final size:23
Alignment explanation
Indices: 7726167--7726270 Score: 90
Period size: 22 Copynumber: 4.6 Consensus size: 23
7726157 TATAAACAAT
*
7726167 TAGGGTTTGCATATTACCACATA
1 TAGGGTTTGCATATAACCACATA
* *
7726190 TAGGGTTCGCATA-AACGACATA
1 TAGGGTTTGCATATAACCACATA
* * *
7726212 TAAGG-CT-CATATATTACCACATG
1 TAGGGTTTGCATATA--ACCACATA
**
7726235 TAGGGTTTGCATA-AATAACATA
1 TAGGGTTTGCATATAACCACATA
7726257 TAGGGTTTGCATAT
1 TAGGGTTTGCATAT
7726271 TTCAATAGAT
Statistics
Matches: 62, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
20 4 0.06
21 1 0.02
22 29 0.47
23 22 0.35
24 2 0.03
25 4 0.06
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (23 bp):
TAGGGTTTGCATATAACCACATA
Found at i:7726271 original size:45 final size:45
Alignment explanation
Indices: 7726167--7726271 Score: 129
Period size: 45 Copynumber: 2.3 Consensus size: 45
7726157 TATAAACAAT
*
7726167 TAGGGTTTGCATATTACCACATATAGGGTTCGCATAAACGACATA
1 TAGGGTTTGCATATTACCACATATAGGGTTCGCATAAACAACATA
* * *** * * *
7726212 TAAGGCTCATATATTACCACATGTAGGGTTTGCATAAATAACATA
1 TAGGGTTTGCATATTACCACATATAGGGTTCGCATAAACAACATA
7726257 TAGGGTTTGCATATT
1 TAGGGTTTGCATATT
7726272 TCAATAGATA
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.32
Consensus pattern (45 bp):
TAGGGTTTGCATATTACCACATATAGGGTTCGCATAAACAACATA
Found at i:7726282 original size:23 final size:23
Alignment explanation
Indices: 7726235--7726309 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 23
7726225 TTACCACATG
* *
7726235 TAGGGTTTGCATA--AATAACATA
1 TAGGGTTTGCATAGTAA-AATAGA
* **
7726257 TAGGGTTTGCATATTTCAATAGA
1 TAGGGTTTGCATAGTAAAATAGA
* *
7726280 TAGAGTTTGCATGGTAAAATAGA
1 TAGGGTTTGCATAGTAAAATAGA
7726303 TAGGGTT
1 TAGGGTT
7726310 CGTATGGATA
Statistics
Matches: 41, Mismatches: 10, Indels: 3
0.76 0.19 0.06
Matches are distributed among these distances:
22 13 0.32
23 28 0.68
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.35
Consensus pattern (23 bp):
TAGGGTTTGCATAGTAAAATAGA
Found at i:7726375 original size:14 final size:14
Alignment explanation
Indices: 7726356--7726488 Score: 79
Period size: 14 Copynumber: 9.3 Consensus size: 14
7726346 AGGGTTCTGC
7726356 ATATGGGTTCGCAT
1 ATATGGGTTCGCAT
7726370 ATATGGGGGGTTCGCAT
1 ATAT---GGGTTCGCAT
*
7726387 ATAGGGGTTCGCAT
1 ATATGGGTTCGCAT
* *
7726401 ATAGGGGTTCACAT
1 ATATGGGTTCGCAT
* * * *
7726415 ACAAGTGTTCGCTT
1 ATATGGGTTCGCAT
* *
7726429 ATAGGGGTTTGCAT
1 ATATGGGTTCGCAT
*
7726443 ACA-GGGCTTCGCAT
1 ATATGGG-TTCGCAT
* * * *
7726457 ACATGGGCTCACCT
1 ATATGGGTTCGCAT
* *
7726471 ATAAGGGTTCGCAC
1 ATATGGGTTCGCAT
7726485 ATAT
1 ATAT
7726489 ATGCTATAGC
Statistics
Matches: 90, Mismatches: 24, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
13 3 0.03
14 71 0.79
15 3 0.03
17 13 0.14
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.29
Consensus pattern (14 bp):
ATATGGGTTCGCAT
Found at i:7726388 original size:29 final size:30
Alignment explanation
Indices: 7726347--7726407 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 30
7726337 AAATCCTATA
7726347 GGGTTCTGCATAT-GGGTTCGCATATATGGG
1 GGGTTCTGCATATAGGGTTCGCATATA-GGG
7726377 GGGTTC-GCATATAGGGGTTCGCATATAGGG
1 GGGTTCTGCATATA-GGGTTCGCATATAGGG
7726407 G
1 G
7726408 TTCACATACA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
29 6 0.21
30 10 0.34
31 13 0.45
ACGTcount: A:0.18, C:0.13, G:0.39, T:0.30
Consensus pattern (30 bp):
GGGTTCTGCATATAGGGTTCGCATATAGGG
Found at i:7726434 original size:42 final size:42
Alignment explanation
Indices: 7726379--7726459 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
7726369 TATATGGGGG
* *
7726379 GTTCGCATATAGGGGTTCGCATATAGGGGTTCACATACAAGT
1 GTTCGCATATAGGGGTTCGCATACAGGGCTTCACATACAAGT
* * *
7726421 GTTCGCTTATAGGGGTTTGCATACAGGGCTTCGCATACA
1 GTTCGCATATAGGGGTTCGCATACAGGGCTTCACATACA
7726460 TGGGCTCACC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (42 bp):
GTTCGCATATAGGGGTTCGCATACAGGGCTTCACATACAAGT
Found at i:7726453 original size:28 final size:27
Alignment explanation
Indices: 7726343--7726457 Score: 99
Period size: 28 Copynumber: 4.1 Consensus size: 27
7726333 TACTAAATCC
*
7726343 TATA-GGGTTCTGCATA-TGGGTTCGCA
1 TATAGGGGTTC-GCATACAGGGTTCGCA
*
7726369 TATATGGGGGGTTCGCATATAGGGGTTCGCA
1 TATA---GGGGTTCGCATACA-GGGTTCGCA
* * *
7726400 TATAGGGGTTCACATACAAGTGTTCGCT
1 TATAGGGGTTCGCATAC-AGGGTTCGCA
*
7726428 TATAGGGGTTTGCATACAGGGCTTCGCA
1 TATAGGGGTTCGCATACAGGG-TTCGCA
7726456 TA
1 TA
7726458 CATGGGCTCA
Statistics
Matches: 72, Mismatches: 9, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
26 4 0.06
27 3 0.04
28 40 0.56
29 6 0.08
30 6 0.08
31 13 0.18
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (27 bp):
TATAGGGGTTCGCATACAGGGTTCGCA
Found at i:7730687 original size:42 final size:40
Alignment explanation
Indices: 7730589--7730788 Score: 219
Period size: 40 Copynumber: 4.9 Consensus size: 40
7730579 AATAAATATA
* * *
7730589 TTTATTTTTTTTAATTTTAAAATATTTTTTACATAC--TT
1 TTTAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTT
7730627 TTTAATTTTTTTAAAATTTTAAAATATTTTTAAAATACTTTTTT
1 TTTAATTTTTTT--AATTTTAAAATATTTTTAAAATAC--TTTT
7730671 TTTAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTT
1 TTTAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTT
* *
7730711 TTTAATTTTTTAAAATTTTAAAATATTTTAAAAATA-TTTT
1 TTTAATTTTTT-TAATTTTAAAATATTTTTAAAATACTTTT
* * *
7730751 TAAAATACTTTTTTTAATTTTTTAAA-ATTTTTAAAATA
1 T---TTAATTTTTTTAA-TTTTAAAATATTTTTAAAATA
7730789 AAAATGGGCC
Statistics
Matches: 141, Mismatches: 10, Indels: 18
0.83 0.06 0.11
Matches are distributed among these distances:
38 11 0.08
40 42 0.30
41 22 0.16
42 37 0.26
43 15 0.11
44 14 0.10
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (40 bp):
TTTAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTT
Found at i:7730697 original size:10 final size:10
Alignment explanation
Indices: 7730684--7730788 Score: 72
Period size: 9 Copynumber: 10.1 Consensus size: 10
7730674 AATTTTTTTA
7730684 ATTTTAAAAT
1 ATTTTAAAAT
7730694 ATTTTTAAAAT
1 A-TTTTAAAAT
**
7730705 ACTTTTTTTAAT
1 A--TTTTAAAAT
*
7730717 -TTTTTAAA-
1 ATTTTAAAAT
7730725 ATTTTAAAAT
1 ATTTTAAAAT
7730735 ATTTTAAAAAT
1 ATTTT-AAAAT
7730746 ATTTTTAAAAT
1 A-TTTTAAAAT
**
7730757 ACTTTTTTTAAT
1 A--TTTTAAAAT
*
7730769 TTTTTAAAAT
1 ATTTTAAAAT
7730779 -TTTTAAAAT
1 ATTTTAAAAT
7730788 A
1 A
7730789 AAAATGGGCC
Statistics
Matches: 78, Mismatches: 9, Indels: 16
0.76 0.09 0.16
Matches are distributed among these distances:
9 23 0.29
10 13 0.17
11 22 0.28
12 20 0.26
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (10 bp):
ATTTTAAAAT
Found at i:7730711 original size:31 final size:29
Alignment explanation
Indices: 7730675--7730739 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 29
7730665 TTTTTTTTTA
7730675 ATTTTTTTAA-TTTTAAAATATTTTTAAAAT
1 ATTTTTTTAATTTTTAAAA-A-TTTTAAAAT
*
7730705 ACTTTTTTTAATTTTTTAAAATTTTAAAAT
1 A-TTTTTTTAATTTTTAAAAATTTTAAAAT
7730735 ATTTT
1 ATTTT
7730740 AAAAATATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
29 4 0.12
30 11 0.34
31 10 0.31
32 7 0.22
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (29 bp):
ATTTTTTTAATTTTTAAAAATTTTAAAAT
Found at i:7730763 original size:83 final size:82
Alignment explanation
Indices: 7730594--7730788 Score: 261
Period size: 83 Copynumber: 2.4 Consensus size: 82
7730584 ATATATTTAT
* * *
7730594 TTTTTTTAATTTTAAAATATTTTTTACATACTTTTTAATTTTTTTAAAATTTTAAAATATTTTTA
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAATTTTTTTAAAATTTTAAAATATTTTAA
***
7730659 AAATACTTTTTTTTTAA
66 AAATACTTTTTAAATAA
7730676 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAA-TTTTTTAAAATTTTAAAATATTTT
1 TTTTTTTAATTTTAAAATATTTTTAAAATAC--TTTTTAATTTTTTTAAAATTTTAAAATATTTT
*
7730740 AAAAATA-TTTTTAAAATAC
64 AAAAATACTTTTT-AAATAA
*
7730759 TTTTTTTAATTTTTTAAA-ATTTTTAAAATA
1 TTTTTTTAA-TTTTAAAATATTTTTAAAATA
7730789 AAAATGGGCC
Statistics
Matches: 101, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
82 34 0.34
83 53 0.52
84 14 0.14
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (82 bp):
TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAATTTTTTTAAAATTTTAAAATATTTTAA
AAATACTTTTTAAATAA
Found at i:7730774 original size:52 final size:52
Alignment explanation
Indices: 7730684--7730788 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 52
7730674 AATTTTTTTA
7730684 ATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTAAAA-TTTTAAAAT
1 ATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTAAAATTTTTAAAAT
7730735 ATTTTAAAAATATTTTTAAAATACTTTTTTTAATTTTTTAAAATTTTTAAAAT
1 ATTTT-AAAATATTTTTAAAATACTTTTTTTAATTTTTTAAAATTTTTAAAAT
7730788 A
1 A
7730789 AAAATGGGCC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
51 5 0.10
52 37 0.71
53 10 0.19
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (52 bp):
ATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTAAAATTTTTAAAAT
Found at i:7741631 original size:2 final size:2
Alignment explanation
Indices: 7741624--7741657 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7741614 ACCTCCCTCC
7741624 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7741658 AGAACCAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7749662 original size:23 final size:23
Alignment explanation
Indices: 7749589--7749685 Score: 78
Period size: 21 Copynumber: 4.4 Consensus size: 23
7749579 CCTAATCAGT
* *
7749589 ATACGACACA-TAAGTGCCT-AA
1 ATACGACACACGAGGTGCCTGAA
7749610 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACGAGGTGCCTGAA
*
7749630 ATACGACACAGGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
* ** * * *
7749653 ATACGGCACATAAAGTGTCTGAT
1 ATACGACACACGAGGTGCCTGAA
7749676 ATACGACACA
1 ATACGACACA
7749686 TAAAGTGCTT
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
20 9 0.15
21 26 0.43
23 26 0.43
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.16
Consensus pattern (23 bp):
ATACGACACACGAGGTGCCTGAA
Found at i:7749686 original size:23 final size:23
Alignment explanation
Indices: 7749589--7749693 Score: 94
Period size: 23 Copynumber: 4.8 Consensus size: 23
7749579 CCTAATCAGT
7749589 ATACGACACAT-AAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
** *
7749610 A-ACGACACACGAGGTGCCTG--
1 ATACGACACATAAAGTGCCTGAA
** *
7749630 ATACGACACAGGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
* * *
7749653 ATACGGCACATAAAGTGTCTGAT
1 ATACGACACATAAAGTGCCTGAA
7749676 ATACGACACATAAAGTGC
1 ATACGACACATAAAGTGC
7749694 TTGATCGGTA
Statistics
Matches: 68, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
20 9 0.13
21 26 0.38
23 33 0.49
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:7750618 original size:9 final size:9
Alignment explanation
Indices: 7750606--7750667 Score: 65
Period size: 9 Copynumber: 6.9 Consensus size: 9
7750596 CTGCTGTTCT
*
7750606 TTTTGTTTC
1 TTTTATTTC
*
7750615 TTTTACTTC
1 TTTTATTTC
*
7750624 TTTTCTTTC
1 TTTTATTTC
7750633 TTTTATTTC
1 TTTTATTTC
7750642 -TTTAGTTTC
1 TTTTA-TTTC
7750651 TTTTATTTAC
1 TTTTATTT-C
7750661 -TTTATTT
1 TTTTATTT
7750668 TATTTACTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
8 4 0.09
9 36 0.80
10 5 0.11
ACGTcount: A:0.10, C:0.13, G:0.03, T:0.74
Consensus pattern (9 bp):
TTTTATTTC
Found at i:7750656 original size:18 final size:18
Alignment explanation
Indices: 7750610--7750664 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
7750600 TGTTCTTTTT
* *
7750610 GTTTCTTTTACTTCTTTT
1 GTTTCTTTTATTTCTTTA
*
7750628 CTTTCTTTTATTTCTTTA
1 GTTTCTTTTATTTCTTTA
7750646 GTTTCTTTTATTTACTTTA
1 GTTTCTTTTATTT-CTTTA
7750665 TTTTATTTAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 27 0.84
19 5 0.16
ACGTcount: A:0.11, C:0.15, G:0.04, T:0.71
Consensus pattern (18 bp):
GTTTCTTTTATTTCTTTA
Found at i:7750668 original size:14 final size:14
Alignment explanation
Indices: 7750651--7750680 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7750641 CTTTAGTTTC
7750651 TTTTATTTACTTTA
1 TTTTATTTACTTTA
7750665 TTTTATTTACTTTA
1 TTTTATTTACTTTA
7750679 TT
1 TT
7750681 GTTTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTATTTACTTTA
Found at i:7750736 original size:21 final size:18
Alignment explanation
Indices: 7750692--7750737 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
7750682 TTTTAATTAC
7750692 TTAATAATTAATATAATT
1 TTAATAATTAATATAATT
*
7750710 TAAATAATTAATACTAAGATT
1 TTAATAATTAATA-T-A-ATT
7750731 TTAATAA
1 TTAATAA
7750738 AAAATCATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 12 0.52
19 1 0.04
20 1 0.04
21 9 0.39
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (18 bp):
TTAATAATTAATATAATT
Found at i:7758658 original size:22 final size:23
Alignment explanation
Indices: 7758633--7758692 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
7758623 TGGACTGAAT
7758633 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
7758655 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
7758677 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
7758693 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:7758660 original size:4 final size:4
Alignment explanation
Indices: 7758642--7758675 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
7758632 TATAAAAATT
7758642 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
7758676 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:7760081 original size:23 final size:22
Alignment explanation
Indices: 7760029--7760081 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
7760019 TCCACGTCTT
*
7760029 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
7760051 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
7760074 TTTCTTTT
1 TTTCTTTT
7760082 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:7762454 original size:22 final size:23
Alignment explanation
Indices: 7762429--7762488 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
7762419 TGGACTGAAT
7762429 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
7762451 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
7762473 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
7762489 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:7762456 original size:4 final size:4
Alignment explanation
Indices: 7762438--7762471 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
7762428 TATAAAAATT
7762438 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
7762472 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:7762902 original size:12 final size:12
Alignment explanation
Indices: 7762885--7762914 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7762875 TTTGATTTGG
7762885 ATCTAGAATAAA
1 ATCTAGAATAAA
*
7762897 ATCTAGAATATA
1 ATCTAGAATAAA
7762909 ATCTAG
1 ATCTAG
7762915 GGTTAATGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (12 bp):
ATCTAGAATAAA
Found at i:7763517 original size:13 final size:13
Alignment explanation
Indices: 7763499--7763549 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
7763489 ACACCCAAAT
7763499 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
*
7763512 TTCTCAAAAGCAT
1 TTCTCAAAAGCAC
* **
7763525 TTCTGAAAATTAC
1 TTCTCAAAAGCAC
7763538 TTCTCAAAAGCA
1 TTCTCAAAAGCA
7763550 ATAAAAAACT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:7763533 original size:26 final size:26
Alignment explanation
Indices: 7763497--7763549 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
7763487 AAACACCCAA
7763497 ATTTCTCAAAAGCACTTCTCAAAAGC
1 ATTTCTCAAAAGCACTTCTCAAAAGC
* **
7763523 ATTTCTGAAAATTACTTCTCAAAAGC
1 ATTTCTCAAAAGCACTTCTCAAAAGC
7763549 A
1 A
7763550 ATAAAAAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.30
Consensus pattern (26 bp):
ATTTCTCAAAAGCACTTCTCAAAAGC
Found at i:7765639 original size:9 final size:9
Alignment explanation
Indices: 7765585--7765640 Score: 58
Period size: 10 Copynumber: 5.9 Consensus size: 9
7765575 TATTTCCCAC
7765585 AAAAAATTA
1 AAAAAATTA
*
7765594 ACAAAAATCA
1 A-AAAAATTA
*
7765604 AGAAAATTCA
1 AAAAAATT-A
*
7765614 AAAAAGATAA
1 AAAAA-ATTA
7765624 AAAAAATTA
1 AAAAAATTA
7765633 AAAAAATT
1 AAAAAATT
7765641 GTGGGTTGAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 17 0.45
10 19 0.50
11 2 0.05
ACGTcount: A:0.73, C:0.05, G:0.04, T:0.18
Consensus pattern (9 bp):
AAAAAATTA
Found at i:7773877 original size:6 final size:6
Alignment explanation
Indices: 7773830--7773858 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
7773820 TAAAGATAAA
7773830 ATTTTT ATTTTT ATTTTT ATTTTT ATTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTT
7773859 GAGCAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:7777874 original size:23 final size:24
Alignment explanation
Indices: 7777828--7777881 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
7777818 ATAAAAATAC
*
7777828 ATAATATTTTTATAAAAATATATAA
1 ATAA-ATTATTATAAAAATATATAA
* *
7777853 A-AAATTATTATAAATATTTATAA
1 ATAAATTATTATAAAAATATATAA
7777876 ATAAAT
1 ATAAAT
7777882 GGATATCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 18 0.72
24 6 0.24
25 1 0.04
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
ATAAATTATTATAAAAATATATAA
Found at i:7777969 original size:20 final size:20
Alignment explanation
Indices: 7777932--7777969 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7777922 TATTATAATG
* *
7777932 ATAATTTTATAAATAAAATA
1 ATAATCTTATAAAAAAAATA
7777952 ATAATCTTATAAAAAAAA
1 ATAATCTTATAAAAAAAA
7777970 GGAAAACCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (20 bp):
ATAATCTTATAAAAAAAATA
Found at i:7778608 original size:13 final size:12
Alignment explanation
Indices: 7778582--7778606 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7778572 TATTTTATCA
7778582 TAAATGATTTTT
1 TAAATGATTTTT
7778594 TAAATGATTTTT
1 TAAATGATTTTT
7778606 T
1 T
7778607 TATAAAGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (12 bp):
TAAATGATTTTT
Found at i:7780042 original size:25 final size:26
Alignment explanation
Indices: 7780013--7780071 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
7780003 AAATTATAGT
7780013 TTTAAAAATAGAAAAAT-AAAAAATC
1 TTTAAAAATAGAAAAATAAAAAAATC
* **
7780038 TTTAAAATTCTAAAAATAAAAAAATC
1 TTTAAAAATAGAAAAATAAAAAAATC
7780064 TTTAAAAA
1 TTTAAAAA
7780072 ATTTAAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 14 0.48
26 15 0.52
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (26 bp):
TTTAAAAATAGAAAAATAAAAAAATC
Found at i:7780079 original size:8 final size:8
Alignment explanation
Indices: 7780013--7780112 Score: 85
Period size: 8 Copynumber: 11.9 Consensus size: 8
7780003 AAATTATAGT
7780013 TTTAAAAA
1 TTTAAAAA
**
7780021 TAGAAAAA
1 TTTAAAAA
*
7780029 -TAAAAAA
1 TTTAAAAA
*
7780036 TCTTTAAAA
1 T-TTAAAAA
7780045 TTCTAAAAA
1 TT-TAAAAA
**
7780054 TAAAAAAA
1 TTTAAAAA
7780062 TCTTTAAAAAA
1 --TTT-AAAAA
7780073 TTTAAAAA
1 TTTAAAAA
7780081 TTTAAAAA
1 TTTAAAAA
7780089 TTTAAAAA
1 TTTAAAAA
7780097 TTTAAAAA
1 TTTAAAAA
7780105 TTCTAAAA
1 TT-TAAAA
7780113 TTCATTGTTA
Statistics
Matches: 74, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
7 5 0.07
8 43 0.58
9 20 0.27
10 1 0.01
11 5 0.07
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (8 bp):
TTTAAAAA
Found at i:7780956 original size:16 final size:16
Alignment explanation
Indices: 7780935--7780968 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7780925 TTAAGCCAAA
7780935 AATATATAAAATTTAT
1 AATATATAAAATTTAT
*
7780951 AATATATAACATTTAT
1 AATATATAAAATTTAT
7780967 AA
1 AA
7780969 AAAATGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
AATATATAAAATTTAT
Found at i:7785854 original size:35 final size:35
Alignment explanation
Indices: 7785815--7785885 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
7785805 GAGGCTCTAC
7785815 TAATTATGTGATGTTTTATATTTTAATTATCATTG
1 TAATTATGTGATGTTTTATATTTTAATTATCATTG
7785850 TAATTATGTGATGTTTTATATTTTAATTATCATTG
1 TAATTATGTGATGTTTTATATTTTAATTATCATTG
7785885 T
1 T
7785886 TTTTTGCTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.28, C:0.03, G:0.11, T:0.58
Consensus pattern (35 bp):
TAATTATGTGATGTTTTATATTTTAATTATCATTG
Found at i:7786271 original size:19 final size:19
Alignment explanation
Indices: 7786222--7786277 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 19
7786212 AATCTTCAAG
7786222 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
7786241 GATATATACAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
7786262 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
7786278 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
21 18 0.55
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7786303 original size:22 final size:22
Alignment explanation
Indices: 7786222--7786300 Score: 71
Period size: 23 Copynumber: 3.7 Consensus size: 22
7786212 AATCTTCAAG
7786222 GATATGCAATCTTAGATATGATAT
1 GATATGCAATCTTAGA-A-GATAT
7786246 -ATA--CAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
7786262 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
7786284 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
7786301 GATTTAATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
16 5 0.11
17 4 0.09
19 7 0.15
21 7 0.15
22 8 0.17
23 15 0.33
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:7787031 original size:27 final size:25
Alignment explanation
Indices: 7786988--7787043 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
7786978 ATATTTTTTA
*
7786988 TTTTTTATAATTCACATACATATATAT
1 TTTTTTATAAGTCACAT--ATATATAT
7787015 TTTTCTTATAAGT-ACATATATATAT
1 TTTT-TTATAAGTCACATATATATAT
7787040 TTTT
1 TTTT
7787044 ATATTTTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 12 0.44
27 8 0.30
28 7 0.26
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (25 bp):
TTTTTTATAAGTCACATATATATAT
Found at i:7787033 original size:23 final size:22
Alignment explanation
Indices: 7787004--7787046 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
7786994 ATAATTCACA
*
7787004 TACATATATATTTTTCTTATAAG
1 TACATATATATATTT-TTATAAG
7787027 TACATATATATATTTTTATA
1 TACATATATATATTTTTATA
7787047 TTTTATAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.53
Consensus pattern (22 bp):
TACATATATATATTTTTATAAG
Found at i:7788705 original size:16 final size:16
Alignment explanation
Indices: 7788680--7788714 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7788670 TTGTGTTTTG
*
7788680 TTTTGGCTGCATGACA
1 TTTTGACTGCATGACA
7788696 TTTTGACTGCATGACA
1 TTTTGACTGCATGACA
7788712 TTT
1 TTT
7788715 CATCATAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (16 bp):
TTTTGACTGCATGACA
Found at i:7799873 original size:16 final size:16
Alignment explanation
Indices: 7799854--7799885 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7799844 ATAAAAAACT
7799854 TTATTATCTTTTTTAA
1 TTATTATCTTTTTTAA
7799870 TTATTATCTTTTTTAA
1 TTATTATCTTTTTTAA
7799886 AGAAATATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (16 bp):
TTATTATCTTTTTTAA
Found at i:7802167 original size:41 final size:41
Alignment explanation
Indices: 7802071--7802183 Score: 135
Period size: 41 Copynumber: 2.9 Consensus size: 41
7802061 GGATAATTCA
* * **
7802071 AAGTAATAAATTGACACCCAGTGTCTCATCG-GCTAAACCG
1 AAGTAGTAAATTGACACCTAGTGTCTCATCGAATTAAACCG
* *
7802111 -A--AGTAAATTGGCACCTAGTGCCTCATCGAATTAAACCG
1 AAGTAGTAAATTGACACCTAGTGTCTCATCGAATTAAACCG
*
7802149 AAGTAGTAAATTGACACCTAGTGTCTCATCAAATT
1 AAGTAGTAAATTGACACCTAGTGTCTCATCGAATT
7802184 GAAGTCGAAG
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
37 23 0.38
38 7 0.12
39 2 0.03
41 28 0.47
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (41 bp):
AAGTAGTAAATTGACACCTAGTGTCTCATCGAATTAAACCG
Found at i:7802317 original size:18 final size:19
Alignment explanation
Indices: 7802291--7802328 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
7802281 AAACACAACC
*
7802291 AATATTCAAT-TAAATTCA
1 AATAATCAATATAAATTCA
*
7802309 AATAATCAATATATATTCA
1 AATAATCAATATAAATTCA
7802328 A
1 A
7802329 TATATATACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.37
Consensus pattern (19 bp):
AATAATCAATATAAATTCA
Found at i:7802330 original size:11 final size:11
Alignment explanation
Indices: 7802292--7802335 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
7802282 AACACAACCA
7802292 ATATTCAAT-T
1 ATATTCAATAT
*
7802302 AAATTCAA-AT
1 ATATTCAATAT
7802312 A-A-TCAATAT
1 ATATTCAATAT
7802321 ATATTCAATAT
1 ATATTCAATAT
7802332 ATAT
1 ATAT
7802336 ACCGATTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
8 4 0.14
9 4 0.14
10 10 0.34
11 11 0.38
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (11 bp):
ATATTCAATAT
Found at i:7803155 original size:5 final size:5
Alignment explanation
Indices: 7803147--7803198 Score: 77
Period size: 5 Copynumber: 10.4 Consensus size: 5
7803137 TATTTTGTTT
* * *
7803147 TAATA TAATA TAATA TAATA TAGTA TAATG TAATA TAAGA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
7803197 TA
1 TA
7803199 CTTAATACTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (5 bp):
TAATA
Found at i:7803533 original size:40 final size:39
Alignment explanation
Indices: 7803478--7803558 Score: 153
Period size: 40 Copynumber: 2.1 Consensus size: 39
7803468 ACAAGTTTGA
7803478 TTTACGGGAATAGAGTCTCGGGAATGCACTTTTTTTTAAT
1 TTTACGGGAATAGAGTCTCGGGAATGCAC-TTTTTTTAAT
7803518 TTTACGGGAATAGAGTCTCGGGAATGCACTTTTTTTAAT
1 TTTACGGGAATAGAGTCTCGGGAATGCACTTTTTTTAAT
7803557 TT
1 TT
7803559 GGTCCTTTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 12 0.29
40 29 0.71
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (39 bp):
TTTACGGGAATAGAGTCTCGGGAATGCACTTTTTTTAAT
Found at i:7804031 original size:36 final size:36
Alignment explanation
Indices: 7803990--7804070 Score: 101
Period size: 36 Copynumber: 2.2 Consensus size: 36
7803980 AGTAACAAAT
*
7803990 GTCTTGCTCTCGCACATCGGG-AGAGGCTTGCAGGAG
1 GTCTTGCTCTCGCACAT-GGGTAGAGGCTTACAGGAG
* * *
7804026 GTCTTGCTCTCGCATATGGGTTGAGGCTTACGGGAG
1 GTCTTGCTCTCGCACATGGGTAGAGGCTTACAGGAG
*
7804062 GTCCTGCTC
1 GTCTTGCTC
7804071 CCACACGTGG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
35 3 0.08
36 36 0.92
ACGTcount: A:0.14, C:0.25, G:0.35, T:0.27
Consensus pattern (36 bp):
GTCTTGCTCTCGCACATGGGTAGAGGCTTACAGGAG
Found at i:7805059 original size:18 final size:19
Alignment explanation
Indices: 7805018--7805066 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 19
7805008 TAAATATTAG
*
7805018 ATTAAATTTAATATTAAATCT
1 ATTAAA-TTAATA-TAAATAT
7805039 ATTAAATTAATA-AAATAT
1 ATTAAATTAATATAAATAT
7805057 ATTAAATTAA
1 ATTAAATTAA
7805067 ATTTAATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 15 0.56
20 6 0.22
21 6 0.22
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
ATTAAATTAATATAAATAT
Found at i:7805077 original size:17 final size:16
Alignment explanation
Indices: 7804976--7805078 Score: 53
Period size: 17 Copynumber: 6.6 Consensus size: 16
7804966 CTTAATCACT
7804976 TTAATATTAAATT-AA
1 TTAATATTAAATTAAA
*
7804991 TATAATACTT--ATCAAGA
1 T-TAATA-TTAAATTAA-A
* *
7805008 TAAATATTAGATTAAA
1 TTAATATTAAATTAAA
7805024 TTTAATATTAAATCT--A
1 -TTAATATTAAAT-TAAA
7805040 TTAA-ATT-AA-TAAA
1 TTAATATTAAATTAAA
*
7805053 AT-ATATTAAATTAAA
1 TTAATATTAAATTAAA
7805068 TTTAATATTAA
1 -TTAATATTAA
7805079 GATAACCACT
Statistics
Matches: 66, Mismatches: 7, Indels: 28
0.65 0.07 0.28
Matches are distributed among these distances:
11 1 0.02
12 1 0.02
13 7 0.11
14 5 0.08
15 13 0.20
16 13 0.20
17 25 0.38
18 1 0.02
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (16 bp):
TTAATATTAAATTAAA
Found at i:7813103 original size:11 final size:11
Alignment explanation
Indices: 7813087--7813117 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7813077 TCATGCCTAA
7813087 AATCAAGCATG
1 AATCAAGCATG
7813098 AATCAAGCATG
1 AATCAAGCATG
*
7813109 AATGAAGCA
1 AATCAAGCA
7813118 ACCAACAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (11 bp):
AATCAAGCATG
Found at i:7815420 original size:17 final size:17
Alignment explanation
Indices: 7815385--7815422 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
7815375 TGCCAGGCCA
*
7815385 TGTGAGCCATACAGCCG
1 TGTGAGCCATACAACCG
*
7815402 TGTGAGCCATACAATCG
1 TGTGAGCCATACAACCG
7815419 TGTG
1 TGTG
7815423 CTAGGCCATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (17 bp):
TGTGAGCCATACAACCG
Found at i:7818520 original size:4 final size:4
Alignment explanation
Indices: 7818503--7818541 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
7818493 ACTCGCTTCT
* * *
7818503 TTAC TTAC TCAC TTAC TTAT TTAC TTAC TTGC TTAC TTA
1 TTAC TTAC TTAC TTAC TTAC TTAC TTAC TTAC TTAC TTA
7818542 AATAACTCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.03, T:0.51
Consensus pattern (4 bp):
TTAC
Done.