Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 28 of 187
Found at i:8064366 original size:33 final size:32
Alignment explanation
Indices: 8064328--8064442 Score: 85
Period size: 33 Copynumber: 3.6 Consensus size: 32
8064318 AAAAACATAG
*
8064328 ATATATACATATATATAATATTCATTAGAAAAA
1 ATATATACATATATATAATATACATTA-AAAAA
* *
8064361 ATATATTA-ATATATTTACATGTACATATATAAAAA
1 ATATA-TACATATATATA-ATATACAT-TA-AAAAA
* * * * *
8064396 ATAAATATATACATAT-ATATAAATTATAAAA
1 ATATATACATATATATAATATACATTAAAAAA
8064427 AT-T-TACATATATATAA
1 ATATATACATATATATAA
8064443 AAAATAATAA
Statistics
Matches: 64, Mismatches: 13, Indels: 13
0.71 0.14 0.14
Matches are distributed among these distances:
29 9 0.14
30 1 0.02
31 6 0.09
32 2 0.03
33 19 0.30
34 10 0.16
35 17 0.27
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (32 bp):
ATATATACATATATATAATATACATTAAAAAA
Found at i:8064424 original size:25 final size:24
Alignment explanation
Indices: 8064382--8064458 Score: 86
Period size: 25 Copynumber: 3.2 Consensus size: 24
8064372 TATTTACATG
*
8064382 TACATATATA-AAAAATAAATATA
1 TACATATATATAAAAATAAAAATA
* *
8064405 TACATATATATAAATTATAAAAATT
1 TACATATATATAAA-AATAAAAATA
*
8064430 TACATATATATAAAAAATAATAAT-
1 TACATATATAT-AAAAATAAAAATA
8064454 TACAT
1 TACAT
8064459 TATTAAGATT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
23 10 0.22
24 8 0.17
25 25 0.54
26 3 0.07
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (24 bp):
TACATATATATAAAAATAAAAATA
Found at i:8066190 original size:44 final size:44
Alignment explanation
Indices: 8066134--8066432 Score: 199
Period size: 44 Copynumber: 6.9 Consensus size: 44
8066124 TAAGATCTGT
* *
8066134 TTTAATCCGCTCCACTGCAACTTCAGGGAGATATGATTATTGGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTGGC
* * *
8066178 TTTAATCTGCTCCACTGTAATTTCAGGGAGATAAGA-T-TTGCC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTGGC
* * * *
8066220 ATCTTCAGTATGCCCCACTGCAACTTCA-GGAGGATAAGA--CTT-GC
1 -T-TT-AATCTGCTCCACTGCAACTTCAGGGA-GATAAGATTATTGGC
* * * *
8066264 TTACTCAGTCTGCTCCCCTGCAACTTCAGGGAGATAAGACTAGAT-GC
1 TT--T-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA-TTGGC
* * * * **
8066311 ---GATCTACT-CTCTGCAACTTCAGAGAGATAAGATCTA-TCAC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATTGGC
* * * * *
8066351 TATAATCCGCTCCACTGTAACTTCAGGGAAATAGGATTATTGGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTGGC
* *
8066395 TTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
8066433 CGCCATCTTC
Statistics
Matches: 197, Mismatches: 40, Indels: 36
0.72 0.15 0.13
Matches are distributed among these distances:
39 1 0.01
40 23 0.12
41 7 0.04
42 5 0.03
43 10 0.05
44 119 0.60
45 29 0.15
47 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTGGC
Found at i:8066568 original size:100 final size:100
Alignment explanation
Indices: 8066439--8066945 Score: 750
Period size: 99 Copynumber: 5.1 Consensus size: 100
8066429 GATTCGCCAT
* * * * * *
8066439 CTTCAATCTGTTTAACTAG-AATGTCGGGGAAATAAGATTTGCCGTCGTAGCTTCAATCTGTTCC
1 CTTCAATCTTTTTAA-TTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCC
* * * *
8066503 ACTATACCGCAAGGGAAGTAAGATTCGCCATTGTGG
65 ACTACACCGCCAGGGAAGTAAGATTCGCCGTTGCGG
8066539 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCCA
** *
8066604 CTACAATGCCAGGGAAGTAAGATTCGCTGTTGCGG
66 CTACACCGCCAGGGAAGTAAGATTCGCCGTTGCGG
* * *
8066639 CTTCAATCTTTTTAATTGTAATGTT-GGGAAACAAGATTCGCCATTGTAGCTTCAACCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCCA
*
8066703 CTACACCGCCAGGGAAGTAAGATTCGCCGTTGTGG
66 CTACACCGCCAGGGAAGTAAGATTCGCCGTTGCGG
* *
8066738 CTTCAATCTTTTTAATTGCAATGTT-GGGAAACAAGATTCGTCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCCA
* *
8066802 CTACACCGCCAGGAAAGTAAGATTCGCCGTTGCGA
66 CTACACCGCCAGGGAAGTAAGATTCGCCGTTGCGG
* * *
8066837 CCTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTTGCCATCGTAGCTTCAATCTGTTCTA
1 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCCA
* *
8066902 CTACACCGCTAGGGGAGTAAGATTCGCCGTTGCGG
66 CTACACCGCCAGGGAAGTAAGATTCGCCGTTGCGG
8066937 CTTCAATCT
1 CTTCAATCT
8066946 GCTCCACTGT
Statistics
Matches: 367, Mismatches: 38, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
99 185 0.50
100 182 0.50
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (100 bp):
CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCCA
CTACACCGCCAGGGAAGTAAGATTCGCCGTTGCGG
Found at i:8066940 original size:50 final size:50
Alignment explanation
Indices: 8066439--8066946 Score: 258
Period size: 50 Copynumber: 10.2 Consensus size: 50
8066429 GATTCGCCAT
* * * * * *
8066439 CTTCAATCTGTT-TAACTAGAATG-TCGGGGAAATAAGATTTGCCGTCGTAG
1 CTTCAATCTGTTCT-ACTACAATGCT-AGGGAAGTAAGATTCGCCGTTGTGG
* * ** * *
8066489 CTTCAATCTGTTCCACTATACCGCAAGGGAAGTAAGATTCGCCATTGTGG
1 CTTCAATCTGTTCTACTACAATGCTAGGGAAGTAAGATTCGCCGTTGTGG
* * * * * ** * * *
8066539 CTTCAATCT-TTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAG
1 CTTCAATCTGTTCT-ACTACAATGCTAGGGAAGTAAGATTCGCCGTTGTGG
* * * *
8066589 CTTCAATCTGTTCCACTACAATGCCAGGGAAGTAAGATTCGCTGTTGCGG
1 CTTCAATCTGTTCTACTACAATGCTAGGGAAGTAAGATTCGCCGTTGTGG
* * ** * ** * *
8066639 CTTCAATCT-TTTTAATTGTAATG-TTGGGAAACAAGATTCGCCATTGTAG
1 CTTCAATCTGTTCT-ACTACAATGCTAGGGAAGTAAGATTCGCCGTTGTGG
* * ** *
8066688 CTTCAACCTGTTCCACTACACCGCCAGGGAAGTAAGATTCGCCGTTGTGG
1 CTTCAATCTGTTCTACTACAATGCTAGGGAAGTAAGATTCGCCGTTGTGG
* * * * ** * * *
8066738 CTTCAATCT-TTTTAATTGCAATG-TTGGGAAACAAGATTCGTCGTCGTAG
1 CTTCAATCTGTTCT-ACTACAATGCTAGGGAAGTAAGATTCGCCGTTGTGG
* ** * * * *
8066787 CTTCAATCTGTTCCACTACACCGCCAGGAAAGTAAGATTCGCCGTTGCGA
1 CTTCAATCTGTTCTACTACAATGCTAGGGAAGTAAGATTCGCCGTTGTGG
* * * * * * ** * * * *
8066837 CCTCAATCT-TTTTAATTGCAATGTTGGGGAAACAAGATTTGCCATCGTAG
1 CTTCAATCTGTTCT-ACTACAATGCTAGGGAAGTAAGATTCGCCGTTGTGG
** * *
8066887 CTTCAATCTGTTCTACTACACCGCTAGGGGAGTAAGATTCGCCGTTGCGG
1 CTTCAATCTGTTCTACTACAATGCTAGGGAAGTAAGATTCGCCGTTGTGG
8066937 CTTCAATCTG
1 CTTCAATCTG
8066947 CTCCACTGTA
Statistics
Matches: 315, Mismatches: 131, Indels: 24
0.67 0.28 0.05
Matches are distributed among these distances:
49 71 0.23
50 239 0.76
51 5 0.02
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (50 bp):
CTTCAATCTGTTCTACTACAATGCTAGGGAAGTAAGATTCGCCGTTGTGG
Found at i:8068213 original size:31 final size:30
Alignment explanation
Indices: 8068178--8068237 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
8068168 GGAGGTGGGA
*
8068178 TGGGAAGAGAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AGAGAATAAAAATTTTAGGGGAAAAG
* * *
8068209 TGGGAGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAGAGAATAAAAATTTTAGGGGAAAA
8068238 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (30 bp):
TGGGAGAGAATAAAAATTTTAGGGGAAAAG
Found at i:8068472 original size:9 final size:9
Alignment explanation
Indices: 8068458--8068512 Score: 92
Period size: 9 Copynumber: 6.1 Consensus size: 9
8068448 TATAGCTTGA
8068458 TATTCGAAT
1 TATTCGAAT
8068467 TATTCGAAT
1 TATTCGAAT
*
8068476 TATTCGACT
1 TATTCGAAT
8068485 TATTCGAAT
1 TATTCGAAT
*
8068494 TATTCGAGT
1 TATTCGAAT
8068503 TATTCGAAT
1 TATTCGAAT
8068512 T
1 T
8068513 CAAAAACTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (9 bp):
TATTCGAAT
Found at i:8068582 original size:9 final size:9
Alignment explanation
Indices: 8068565--8068595 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8068555 TCGAGTTGAT
8068565 TCGAATAAC
1 TCGAATAAC
*
8068574 TCGATTAAC
1 TCGAATAAC
8068583 TCGAATAAC
1 TCGAATAAC
8068592 TCGA
1 TCGA
8068596 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:8070605 original size:25 final size:25
Alignment explanation
Indices: 8070552--8070617 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
8070542 AAGAAAATCC
* * *
8070552 AAAAGAATGAAAGAATAATTATTCG
1 AAAATAATGAAAGAATAATTACTCA
8070577 AAAATAATGAAAGAAT-ATTGACTCA
1 AAAATAATGAAAGAATAATT-ACTCA
8070602 AAAATGAATGCAAAGA
1 AAAAT-AATG-AAAGA
8070618 TGTATTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.09
25 23 0.66
26 4 0.11
27 5 0.14
ACGTcount: A:0.58, C:0.06, G:0.15, T:0.21
Consensus pattern (25 bp):
AAAATAATGAAAGAATAATTACTCA
Found at i:8075989 original size:25 final size:24
Alignment explanation
Indices: 8075947--8076023 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 24
8075937 TATTTGCATG
*
8075947 TACATATATA-AAAAAT-AAATAT
1 TACATATATATAAAAATAAAAAAT
*
8075969 ATACATATATATAAATTATAAAAAAT
1 -TACATATATATAAA-AATAAAAAAT
*
8075995 TACATATATATAAAAA-ATAATAAT
1 TACATATATATAAAAATA-AAAAAT
8076019 TACAT
1 TACAT
8076024 TATTGAAATT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
23 11 0.24
24 14 0.30
25 16 0.35
26 5 0.11
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (24 bp):
TACATATATATAAAAATAAAAAAT
Found at i:8079475 original size:13 final size:13
Alignment explanation
Indices: 8079439--8079489 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
8079429 CTTAAACCAA
8079439 ACTTTTCAAAAGT
1 ACTTTTCAAAAGT
*
8079452 ACTTCTCAAAAGT
1 ACTTTTCAAAAGT
* **
8079465 ACTTTTTAAAAAC
1 ACTTTTCAAAAGT
*
8079478 ACTTTGCAAAAG
1 ACTTTTCAAAAG
8079490 AACGCTAAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (13 bp):
ACTTTTCAAAAGT
Found at i:8093120 original size:58 final size:58
Alignment explanation
Indices: 8093011--8093124 Score: 144
Period size: 58 Copynumber: 2.0 Consensus size: 58
8093001 TAATCATATT
* *
8093011 TTAACATAATTATTATTAAATACAATTTAATAAAATAATATATTATTTAATATCATTC
1 TTAACATAATTATTATTAAATACAATTTAATAAAATAATATAATATATAATATCATTC
* *
8093069 TTAATATAATTATTATTAAAATATGAA-TTAAT-AAA-AATCATAATATATAATATCAT
1 TTAACATAATTATTATT-AAATA-CAATTTAATAAAATAAT-ATAATATATAATATCAT
8093125 AAAATAATAT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
57 3 0.06
58 34 0.69
59 10 0.20
60 2 0.04
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (58 bp):
TTAACATAATTATTATTAAATACAATTTAATAAAATAATATAATATATAATATCATTC
Found at i:8094658 original size:45 final size:45
Alignment explanation
Indices: 8094605--8094710 Score: 131
Period size: 45 Copynumber: 2.4 Consensus size: 45
8094595 AAGACTATAG
*
8094605 TTGAAAGACACTATGGCACCATACCAGAATCGAGTAAGACCATGA
1 TTGAAAGACACTATGGCACCATACCACAATCGAGTAAGACCATGA
** * *** * *
8094650 TTGAAAGACGTTATGGCATCATAGTTCTATCGAGTAAGACCATGG
1 TTGAAAGACACTATGGCACCATACCACAATCGAGTAAGACCATGA
8094695 TTGAAAGACACTATGG
1 TTGAAAGACACTATGG
8094711 AAACACGATG
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.24
Consensus pattern (45 bp):
TTGAAAGACACTATGGCACCATACCACAATCGAGTAAGACCATGA
Found at i:8094802 original size:45 final size:46
Alignment explanation
Indices: 8094684--8094803 Score: 154
Period size: 45 Copynumber: 2.6 Consensus size: 46
8094674 TTCTATCGAG
* * * *
8094684 TAAGACCATGGTTGAAAGACACTATGGAAACACGATGAAAAATGAA
1 TAAGACCATGGTTGAAAGACACTATGGCAACAAGACGAAAAATAAA
* *
8094730 TAAGACTATGGTTGAAATG-CACTATGGCATCAAGACG-AAAATAAA
1 TAAGACCATGGTTGAAA-GACACTATGGCAACAAGACGAAAAATAAA
*
8094775 TAAGACCATGGTTGAAAGACACCATGGCA
1 TAAGACCATGGTTGAAAGACACTATGGCA
8094804 CACTACGATC
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
44 1 0.02
45 32 0.50
46 30 0.47
47 1 0.02
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGACACTATGGCAACAAGACGAAAAATAAA
Found at i:8101092 original size:45 final size:45
Alignment explanation
Indices: 8101032--8101126 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
8101022 TACTATGTGA
*
8101032 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGTTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGTTGATTCC
* * * * *
8101077 ACCGGACATTATTGATTAATAATGTGGTTGCTATGTGTTGAATCT
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGTTGATTCC
8101122 ACCGA
1 ACCGA
8101127 GTATCTGTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGTTGATTCC
Found at i:8105490 original size:23 final size:23
Alignment explanation
Indices: 8105462--8105586 Score: 94
Period size: 23 Copynumber: 5.4 Consensus size: 23
8105452 TCCAAACAGA
* *
8105462 GCCTTTGTGGTGCATTCTGGTTG
1 GCCTTTGTGGTGAATTCTGTTTG
* *
8105485 CCCTTTGTGGCGTAA-TCTGTTTG
1 GCCTTTGTGGTG-AATTCTGTTTG
* *
8105508 GCCTTTGCGGTGAATTATGTTTG
1 GCCTTTGTGGTGAATTCTGTTTG
* *
8105531 GCCTTTGTGG-CATATTCTATTTG
1 GCCTTTGTGGTGA-ATTCTGTTTG
* * **
8105554 GCCTTTGCGGCGTAA-TCCATTTG
1 GCCTTTGTGGTG-AATTCTGTTTG
8105577 GCCTTTGTGG
1 GCCTTTGTGG
8105587 CATATTCTAT
Statistics
Matches: 81, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
22 3 0.04
23 75 0.93
24 2 0.02
25 1 0.01
ACGTcount: A:0.10, C:0.19, G:0.29, T:0.42
Consensus pattern (23 bp):
GCCTTTGTGGTGAATTCTGTTTG
Found at i:8105513 original size:46 final size:46
Alignment explanation
Indices: 8105462--8105602 Score: 142
Period size: 46 Copynumber: 3.1 Consensus size: 46
8105452 TCCAAACAGA
* * * * *
8105462 GCCTTTGTGGTGCATTCTGGTTGCCCTTTGTGGCGTAATCTGTTTG
1 GCCTTTGCGGTGAATTATGGTTGCCCTTTGTGGCATAATCTATTTG
* * *
8105508 GCCTTTGCGGTGAATTATGTTTGGCCTTTGTGGCATATTCTATTTG
1 GCCTTTGCGGTGAATTATGGTTGCCCTTTGTGGCATAATCTATTTG
* * * *
8105554 GCCTTTGCGGCGTAATCCAT--TTGGCCTTTGTGGCATATTCTATTTG
1 GCCTTTGCGGTG-AAT-TATGGTTGCCCTTTGTGGCATAATCTATTTG
8105600 GCC
1 GCC
8105603 AGTGTGGCAT
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
46 78 0.94
47 3 0.04
48 2 0.02
ACGTcount: A:0.11, C:0.20, G:0.27, T:0.43
Consensus pattern (46 bp):
GCCTTTGCGGTGAATTATGGTTGCCCTTTGTGGCATAATCTATTTG
Found at i:8105598 original size:23 final size:23
Alignment explanation
Indices: 8105486--8105617 Score: 131
Period size: 23 Copynumber: 5.7 Consensus size: 23
8105476 TTCTGGTTGC
* * *
8105486 CCTTTGTGGCGTAATCTGTTTGG
1 CCTTTGTGGCATATTCTATTTGG
* * * *
8105509 CCTTTGCGGTGA-ATTATGTTTGG
1 CCTTTGTGG-CATATTCTATTTGG
8105532 CCTTTGTGGCATATTCTATTTGG
1 CCTTTGTGGCATATTCTATTTGG
* * * *
8105555 CCTTTGCGGCGTAATCCATTTGG
1 CCTTTGTGGCATATTCTATTTGG
8105578 CCTTTGTGGCATATTCTATTTGG
1 CCTTTGTGGCATATTCTATTTGG
**
8105601 CCAGTGTGGCATATTCT
1 CCTTTGTGGCATATTCT
8105618 GTAAAGCCTG
Statistics
Matches: 88, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
22 1 0.01
23 87 0.99
ACGTcount: A:0.13, C:0.19, G:0.26, T:0.42
Consensus pattern (23 bp):
CCTTTGTGGCATATTCTATTTGG
Found at i:8105600 original size:69 final size:69
Alignment explanation
Indices: 8105486--8105617 Score: 167
Period size: 69 Copynumber: 1.9 Consensus size: 69
8105476 TTCTGGTTGC
* ** * * **
8105486 CCTTTGTGGCGTAATCTGTTTGGCCTTTGCGGTGAATTATGTTTGGCCTTTGTGGCATATTCTAT
1 CCTTTGCGGCGTAATCCATTTGGCCTTTGCGGTCAATTATATTTGGCCAGTGTGGCATATTCTAT
8105551 TTGG
66 TTGG
* *
8105555 CCTTTGCGGCGTAATCCATTTGGCCTTTGTGG-CATATTCTATTTGGCCAGTGTGGCATATTCT
1 CCTTTGCGGCGTAATCCATTTGGCCTTTGCGGTCA-ATTATATTTGGCCAGTGTGGCATATTCT
8105618 GTAAAGCCTG
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
68 1 0.02
69 52 0.98
ACGTcount: A:0.13, C:0.19, G:0.26, T:0.42
Consensus pattern (69 bp):
CCTTTGCGGCGTAATCCATTTGGCCTTTGCGGTCAATTATATTTGGCCAGTGTGGCATATTCTAT
TTGG
Found at i:8105630 original size:23 final size:23
Alignment explanation
Indices: 8105577--8105631 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 23
8105567 AATCCATTTG
* ***
8105577 GCCTTTGTGGCATATTCTATTTG
1 GCCTGTGTGGCATATTCTATAAA
* *
8105600 GCCAGTGTGGCATATTCTGTAAA
1 GCCTGTGTGGCATATTCTATAAA
8105623 GCCTGTGTG
1 GCCTGTGTG
8105632 ACATGATCTG
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.16, C:0.18, G:0.27, T:0.38
Consensus pattern (23 bp):
GCCTGTGTGGCATATTCTATAAA
Found at i:8107833 original size:47 final size:47
Alignment explanation
Indices: 8107775--8107872 Score: 189
Period size: 47 Copynumber: 2.1 Consensus size: 47
8107765 AAGAAAAAGG
8107775 TTAA-GGGTTATTTAGACTTATTAGCCTAATGTTTACTAAATTGTAA
1 TTAAGGGGTTATTTAGACTTATTAGCCTAATGTTTACTAAATTGTAA
8107821 TTAAGGGGTTATTTAGACTTATTAGCCTAATGTTTACTAAATTGTAA
1 TTAAGGGGTTATTTAGACTTATTAGCCTAATGTTTACTAAATTGTAA
8107868 TTAAG
1 TTAAG
8107873 TATATAGTGT
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 4 0.08
47 47 0.92
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (47 bp):
TTAAGGGGTTATTTAGACTTATTAGCCTAATGTTTACTAAATTGTAA
Found at i:8111298 original size:28 final size:29
Alignment explanation
Indices: 8111253--8111321 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 29
8111243 TTTTTTTTAT
* *
8111253 TTATGAAAACAATATAAAATA-AAATTAA
1 TTATCAAAATAATATAAAATATAAATTAA
* *
8111281 TT-TCAGAAATAATATAAATTATAAATTAT
1 TTATCA-AAATAATATAAAATATAAATTAA
8111310 TTATCAAAATAA
1 TTATCAAAATAA
8111322 CATGAAACCT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
27 2 0.06
28 15 0.44
29 14 0.41
30 3 0.09
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (29 bp):
TTATCAAAATAATATAAAATATAAATTAA
Found at i:8113699 original size:72 final size:72
Alignment explanation
Indices: 8113609--8113764 Score: 190
Period size: 72 Copynumber: 2.2 Consensus size: 72
8113599 AAAATCACAT
* * * *
8113609 ATAAACAACTATTGATAAAACTA-ATTTAGTA-AAAAATAAATAGAATATAAATTCAATATCTAA
1 ATAAACAACTATTAATAAAACTAGA-TTA-CACAAAAATAAATAGAACATAAATTCAATATCCAA
*
8113672 AGACCAAAC
64 AAACCAAAC
* * * *
8113681 ATAAACAGCTTTTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTAATAAAACTAGATTACACAAAAATAAATAGAACATAAATTCAATATCCAAAA
8113746 ACCAAAC
66 ACCAAAC
*
8113753 ATAAATAACTAT
1 ATAAACAACTAT
8113765 GGATAAAGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
71 1 0.01
72 68 0.97
73 1 0.01
ACGTcount: A:0.56, C:0.13, G:0.05, T:0.26
Consensus pattern (72 bp):
ATAAACAACTATTAATAAAACTAGATTACACAAAAATAAATAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:8114230 original size:18 final size:18
Alignment explanation
Indices: 8114205--8114270 Score: 114
Period size: 18 Copynumber: 3.7 Consensus size: 18
8114195 TCCATCAATT
8114205 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
*
8114223 TAAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
*
8114241 TGAACATCATTTAAAATG
1 TGAACATCATTTGAAATG
8114259 TGAACATCATTT
1 TGAACATCATTT
8114271 CTTATATTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTGAAATG
Found at i:8116911 original size:19 final size:19
Alignment explanation
Indices: 8116887--8116968 Score: 83
Period size: 19 Copynumber: 4.0 Consensus size: 19
8116877 GTGGTGGAGA
8116887 AGAGGAACAAAGAAGCAGC
1 AGAGGAACAAAGAAGCAGC
8116906 AGAGGAACAAAGAACCAGCACCAGC
1 AGAGGAACAAAG-A--AG---CAGC
* *
8116931 AGAAGAACAAAGAATCAGC
1 AGAGGAACAAAGAAGCAGC
*
8116950 AGAGGAACAAAGAACCAGC
1 AGAGGAACAAAGAAGCAGC
8116969 GATGGGAGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
19 33 0.62
20 1 0.02
22 3 0.06
24 1 0.02
25 15 0.28
ACGTcount: A:0.52, C:0.21, G:0.26, T:0.01
Consensus pattern (19 bp):
AGAGGAACAAAGAAGCAGC
Found at i:8116930 original size:25 final size:25
Alignment explanation
Indices: 8116902--8116950 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
8116892 AACAAAGAAG
*
8116902 CAGCAGAGGAACAAAGAACCAGCAC
1 CAGCAGAAGAACAAAGAACCAGCAC
*
8116927 CAGCAGAAGAACAAAGAATCAGCA
1 CAGCAGAAGAACAAAGAACCAGCA
8116951 GAGGAACAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.51, C:0.24, G:0.22, T:0.02
Consensus pattern (25 bp):
CAGCAGAAGAACAAAGAACCAGCAC
Found at i:8117276 original size:28 final size:27
Alignment explanation
Indices: 8117245--8117313 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 27
8117235 TTGATTTAAT
8117245 TTTAATGTTTTTTAATTTAG-TTCTTAC
1 TTTAATGTTTTTTAATTTAGCTT-TTAC
*
8117272 ATTTAATATTTTTTAATTTAGCTTTTAC
1 -TTTAATGTTTTTTAATTTAGCTTTTAC
*
8117300 CTTACATGTTTTTT
1 TTTA-ATGTTTTTT
8117314 TTTAATTTAC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 3 0.08
28 31 0.86
29 2 0.06
ACGTcount: A:0.23, C:0.09, G:0.06, T:0.62
Consensus pattern (27 bp):
TTTAATGTTTTTTAATTTAGCTTTTAC
Found at i:8119388 original size:80 final size:80
Alignment explanation
Indices: 8119295--8119452 Score: 244
Period size: 80 Copynumber: 2.0 Consensus size: 80
8119285 AGGCTGTATG
* * * *
8119295 ACTCACTGACTTGAACCCTAAGAAATTTTTAGATAACACACGGTCGTGTCGCCAGGCCGTGTGCC
1 ACTCACTGACTTGAACCCTAAGAAATTTTCAGATAACACACGGTAGGGTCGCCAAGCCGTGTGCC
8119360 TCACACGACCGTGCA
66 TCACACGACCGTGCA
**
8119375 ACTCACTGACTTGAACCCTAAGAAATTTTCAGATGGCACACGGTAGGGTCGCCAAGCCGTGTGCC
1 ACTCACTGACTTGAACCCTAAGAAATTTTCAGATAACACACGGTAGGGTCGCCAAGCCGTGTGCC
* *
8119440 TTATACGACCGTG
66 TCACACGACCGTG
8119453 TGACAGACCT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 70 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
ACTCACTGACTTGAACCCTAAGAAATTTTCAGATAACACACGGTAGGGTCGCCAAGCCGTGTGCC
TCACACGACCGTGCA
Found at i:8120124 original size:40 final size:40
Alignment explanation
Indices: 8120071--8120216 Score: 195
Period size: 40 Copynumber: 3.6 Consensus size: 40
8120061 GAGTTACCGG
* *
8120071 AGTATAAACAGGGGCACATATGTGCATTTAGGGGTACCAA
1 AGTACAAACAGGGGCACGTATGTGCATTTAGGGGTACCAA
* * *
8120111 AGTACAAATAGGGGCACGTATGTGCATTTAGGGATATCGAA
1 AGTACAAACAGGGGCACGTATGTGCATTTAGGGGTA-CCAA
* * *
8120152 A-CACAAACAGGGGCACGTATGTGCATTCAGGGGTACCGA
1 AGTACAAACAGGGGCACGTATGTGCATTTAGGGGTACCAA
*
8120191 AGTACAAACAGAGGCACGTATGTGCA
1 AGTACAAACAGGGGCACGTATGTGCA
8120217 ATTATACACT
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.03
40 84 0.92
41 4 0.04
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (40 bp):
AGTACAAACAGGGGCACGTATGTGCATTTAGGGGTACCAA
Found at i:8120142 original size:20 final size:20
Alignment explanation
Indices: 8120080--8120143 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
8120070 GAGTATAAAC
8120080 AGGGGCACATATGTGCATTT
1 AGGGGCACATATGTGCATTT
* * * **
8120100 AGGGGTACCA-AAGTACAAAT
1 AGGGGCA-CATATGTGCATTT
*
8120120 AGGGGCACGTATGTGCATTT
1 AGGGGCACATATGTGCATTT
8120140 AGGG
1 AGGG
8120144 ATATCGAAAC
Statistics
Matches: 31, Mismatches: 11, Indels: 4
0.67 0.24 0.09
Matches are distributed among these distances:
19 1 0.03
20 28 0.90
21 2 0.06
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.23
Consensus pattern (20 bp):
AGGGGCACATATGTGCATTT
Found at i:8124460 original size:11 final size:11
Alignment explanation
Indices: 8124443--8124472 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8124433 GTTTTTCTTC
8124443 CTTTAATTTTG
1 CTTTAATTTTG
*
8124454 TTTTAATTTTG
1 CTTTAATTTTG
8124465 CTTTAATT
1 CTTTAATT
8124473 ACAATTTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (11 bp):
CTTTAATTTTG
Found at i:8128001 original size:27 final size:26
Alignment explanation
Indices: 8127945--8128003 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
8127935 TGGTAATTTT
* *
8127945 TTTTAAAAAAAATGGCCTACTTAATTA
1 TTTT-AAAAAAATAGCATACTTAATTA
* *
8127972 TTTTAAAAAAATAGCATATTTACTTAA
1 TTTTAAAAAAATAGCATACTTAATT-A
8127999 TTTTA
1 TTTTA
8128004 CCATCAGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.42
Consensus pattern (26 bp):
TTTTAAAAAAATAGCATACTTAATTA
Found at i:8128766 original size:17 final size:17
Alignment explanation
Indices: 8128744--8128778 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
8128734 TGGTGACCTA
*
8128744 ATTTTTAGGGTATTTTT
1 ATTTTTAGGATATTTTT
8128761 ATTTTTAGGATATTTTT
1 ATTTTTAGGATATTTTT
8128778 A
1 A
8128779 GTTTAGTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.14, T:0.63
Consensus pattern (17 bp):
ATTTTTAGGATATTTTT
Found at i:8128783 original size:16 final size:17
Alignment explanation
Indices: 8128747--8128784 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
8128737 TGACCTAATT
* *
8128747 TTTAGGGTATTTTTATT
1 TTTAGGATATTTTTATG
8128764 TTTAGGATATTTTTA-G
1 TTTAGGATATTTTTATG
8128780 TTTAG
1 TTTAG
8128785 TTACTCATGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.61
Consensus pattern (17 bp):
TTTAGGATATTTTTATG
Found at i:8130551 original size:20 final size:21
Alignment explanation
Indices: 8130522--8130563 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
8130512 TTTTGAGTAA
*
8130522 TTTAATTTTTTCT-TTTATTT
1 TTTAACTTTTTCTCTTTATTT
*
8130542 TTTAACTTTTTTTCTTTATTT
1 TTTAACTTTTTCTCTTTATTT
8130563 T
1 T
8130564 CCATTCTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTAACTTTTTCTCTTTATTT
Found at i:8130553 original size:21 final size:20
Alignment explanation
Indices: 8130522--8130563 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
8130512 TTTTGAGTAA
8130522 TTTAA-TTTTTTCTTTTATTT
1 TTTAATTTTTTTC-TTTATTT
8130542 TTTAACTTTTTTTCTTTATTT
1 TTTAA-TTTTTTTCTTTATTT
8130563 T
1 T
8130564 CCATTCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 8 0.40
22 7 0.35
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTAATTTTTTTCTTTATTT
Found at i:8132474 original size:172 final size:173
Alignment explanation
Indices: 8132175--8132518 Score: 582
Period size: 172 Copynumber: 2.0 Consensus size: 173
8132165 CAAAGATATC
* *
8132175 CACATGTAAGTTATCAACACGCAACCTATAGTTTATGAGATTATTTTTTTAATGATTTGTTTAAG
1 CACATGTAAGTTATCAACAAGCAACCTATAGTTTACGAGATTATTTTTTTAATGATTTGTTTAAG
* * * * *
8132240 AATAAAACTTTTTAGATCATGCAATCGAGACAATTCTTGCTAATGTTTATGAGTTTATTTATTAG
66 AATAAAACTATTTAGATCATGCAATCGAGACAATTCTTGCTAATATTTATAAGTTAATTTATTAA
*
8132305 ACTTTCAATTATTATTGAATGTTAGATTGTCAGTGCGAATAAT
131 ACTTTCAATTATTATTGAATGCTAGATTGTCAGTGCGAATAAT
*
8132348 CACATGTAAGTTATCAACAAGCAACCTGTAGTTTACGAGATTA-TTTTTTAATGATTTGTTTAAG
1 CACATGTAAGTTATCAACAAGCAACCTATAGTTTACGAGATTATTTTTTTAATGATTTGTTTAAG
* *
8132412 AATAAAACTATTTAGATTATGCAATTGAGACAATTCTTGCTAATATTTATAAGTTAATTTATTAA
66 AATAAAACTATTTAGATCATGCAATCGAGACAATTCTTGCTAATATTTATAAGTTAATTTATTAA
8132477 ACTTTCAATTATTATTGAATGCTAGATTGTCAGTGCGAATAA
131 ACTTTCAATTATTATTGAATGCTAGATTGTCAGTGCGAATAA
8132519 CTATCGCAAA
Statistics
Matches: 160, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
172 120 0.75
173 40 0.25
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.41
Consensus pattern (173 bp):
CACATGTAAGTTATCAACAAGCAACCTATAGTTTACGAGATTATTTTTTTAATGATTTGTTTAAG
AATAAAACTATTTAGATCATGCAATCGAGACAATTCTTGCTAATATTTATAAGTTAATTTATTAA
ACTTTCAATTATTATTGAATGCTAGATTGTCAGTGCGAATAAT
Found at i:8143450 original size:16 final size:16
Alignment explanation
Indices: 8143417--8143450 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8143407 AGCTAATGTT
* *
8143417 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
8143433 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
8143449 AA
1 AA
8143451 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:8146278 original size:21 final size:21
Alignment explanation
Indices: 8146252--8146292 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8146242 AGACGAGCAA
* *
8146252 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
8146273 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
8146293 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:8148231 original size:16 final size:16
Alignment explanation
Indices: 8148198--8148231 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8148188 GGAGATTGTT
* *
8148198 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
8148214 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
8148230 AA
1 AA
8148232 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:8152602 original size:22 final size:22
Alignment explanation
Indices: 8152577--8152631 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
8152567 TATATTCTAC
*
8152577 ATTTTAAACTATTTTATTT-TCT
1 ATTTTAAACTACTTTATTTAT-T
* *
8152599 ATTTTACAGTACTTTATTTAGTT
1 ATTTTAAACTACTTTATTTA-TT
8152622 ATTTTAAACT
1 ATTTTAAACT
8152632 TTGGTATATA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
22 16 0.62
23 9 0.35
24 1 0.04
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.58
Consensus pattern (22 bp):
ATTTTAAACTACTTTATTTATT
Found at i:8152742 original size:16 final size:16
Alignment explanation
Indices: 8152701--8152743 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
8152691 TATATATGAT
* *
8152701 ATTTTAAAATTTATTT
1 ATTTTAAAATTAATTA
8152717 ATCTTT-AAATTAATTA
1 AT-TTTAAAATTAATTA
8152733 ATTTTAAAATT
1 ATTTTAAAATT
8152744 TCTCTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 3 0.13
16 17 0.74
17 3 0.13
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTTTAAAATTAATTA
Found at i:8152809 original size:26 final size:27
Alignment explanation
Indices: 8152780--8152839 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
8152770 ATTGTGTGTT
* *
8152780 TTTTAACTTATTTTGTAAATTA-TTTA
1 TTTTAAATTATTCTGTAAATTATTTTA
*
8152806 TTTTAAATTATTCTGTATATTATTTTA
1 TTTTAAATTATTCTGTAAATTATTTTA
8152833 TTATTAA
1 TT-TTAA
8152840 TTTGCTCTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 19 0.66
27 6 0.21
28 4 0.14
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (27 bp):
TTTTAAATTATTCTGTAAATTATTTTA
Found at i:8153449 original size:3 final size:3
Alignment explanation
Indices: 8153443--8153474 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8153433 TATGGTTTTA
8153443 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8153475 AATAAACCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8162019 original size:6 final size:6
Alignment explanation
Indices: 8162008--8162046 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
8161998 TAGGTAAATA
*
8162008 AATTTG AATTTG AATTTA AATTTG AATTTG AATTTG AAT
1 AATTTG AATTTG AATTTG AATTTG AATTTG AATTTG AAT
8162047 CAAATAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (6 bp):
AATTTG
Found at i:8163069 original size:15 final size:15
Alignment explanation
Indices: 8163049--8163079 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8163039 ATTATTAAAG
8163049 TTAGTGGGTGGCATT
1 TTAGTGGGTGGCATT
8163064 TTAGTGGGTGGCATT
1 TTAGTGGGTGGCATT
8163079 T
1 T
8163080 GACAAAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.06, G:0.39, T:0.42
Consensus pattern (15 bp):
TTAGTGGGTGGCATT
Found at i:8163581 original size:42 final size:44
Alignment explanation
Indices: 8163511--8163596 Score: 131
Period size: 42 Copynumber: 2.0 Consensus size: 44
8163501 ATTAACGTTT
* *
8163511 GCGGCGTTTTTAGAAATAAACGCTGCTAAAGGCCATGACCTTTA
1 GCGGCGCTTTTAGAAATAAACGCCGCTAAAGGCCATGACCTTTA
*
8163555 GCGGCGCTTTTA-AAA-AAACGCCGCTAAAGGTCATGACCTTTA
1 GCGGCGCTTTTAGAAATAAACGCCGCTAAAGGCCATGACCTTTA
8163597 ACAGTGCTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
42 25 0.64
43 3 0.08
44 11 0.28
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (44 bp):
GCGGCGCTTTTAGAAATAAACGCCGCTAAAGGCCATGACCTTTA
Found at i:8163700 original size:43 final size:43
Alignment explanation
Indices: 8163620--8163855 Score: 237
Period size: 43 Copynumber: 5.5 Consensus size: 43
8163610 CACAAACATT
* * * * *
8163620 GCTATAGATCATGACTTTTAGCGGTGATCTTT-TTACAAATGTC
1 GCTATAGATCATGACTTTTAGCGG-CACCTTTCCTACAAACGCC
*
8163663 GCTATAGATCATGACTTTTCGCGGCACCTTTCCTACAAACGCC
1 GCTATAGATCATGACTTTTAGCGGCACCTTTCCTACAAACGCC
* * *
8163706 GCTATAGGTCATGACCTTTT-GCGGCACCTCTCCCACAAACGCC
1 GCTATAGATCATGA-CTTTTAGCGGCACCTTTCCTACAAACGCC
* *
8163749 GCTAAAGATCATGACTTTTAGCGGC-GCTTCTCCTAC-AACGCC
1 GCTATAGATCATGACTTTTAGCGGCACCTT-TCCTACAAACGCC
* * * ** *
8163791 GCTATAGATCATGACTTTTAGCGACGCTTTTTTTATAAACGCC
1 GCTATAGATCATGACTTTTAGCGGCACCTTTCCTACAAACGCC
* * *
8163834 GCTAAAGAACACGACTTTTAGC
1 GCTATAGATCATGACTTTTAGC
8163856 AGCATTTTTT
Statistics
Matches: 163, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
42 44 0.27
43 114 0.70
44 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (43 bp):
GCTATAGATCATGACTTTTAGCGGCACCTTTCCTACAAACGCC
Found at i:8163838 original size:85 final size:86
Alignment explanation
Indices: 8163544--8163855 Score: 290
Period size: 86 Copynumber: 3.7 Consensus size: 86
8163534 TGCTAAAGGC
* ** * * * * * *
8163544 CATGACCTTTAGCGGCGC-TTTTAAAAAAACGCCGCTAAAGGTCATGACCTTTAACAGTGCTTCT
1 CATGACTTTTAGCGGCGCTTTTTTTACAAACGCCGCTAAAGATCATGACTTTTAGCGGCGCTTCT
* ***
8163608 CCCACAAACATTGCTATAGAT
66 CCTACAAACGCCGCTATAGAT
* * * * * * * *
8163629 CATGACTTTTAGCGGTGATCTTTTTACAAATGTCGCTATAGATCATGACTTTTCGCGGCACCTT-
1 CATGACTTTTAGCGGCGCTTTTTTTACAAACGCCGCTAAAGATCATGACTTTTAGCGGC-GCTTC
*
8163693 TCCTACAAACGCCGCTATAGGT
65 TCCTACAAACGCCGCTATAGAT
* * * ***
8163715 CATGACCTTTT-GCGGCACCTCTCCCACAAACGCCGCTAAAGATCATGACTTTTAGCGGCGCTTC
1 CATGA-CTTTTAGCGGCGCTTTTTTTACAAACGCCGCTAAAGATCATGACTTTTAGCGGCGCTTC
8163779 TCCTAC-AACGCCGCTATAGAT
65 TCCTACAAACGCCGCTATAGAT
* * * *
8163800 CATGACTTTTAGCGACGCTTTTTTTATAAACGCCGCTAAAGAACACGACTTTTAGC
1 CATGACTTTTAGCGGCGCTTTTTTTACAAACGCCGCTAAAGATCATGACTTTTAGC
8163856 AGCATTTTTT
Statistics
Matches: 175, Mismatches: 47, Indels: 10
0.75 0.20 0.04
Matches are distributed among these distances:
84 5 0.03
85 72 0.41
86 90 0.51
87 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (86 bp):
CATGACTTTTAGCGGCGCTTTTTTTACAAACGCCGCTAAAGATCATGACTTTTAGCGGCGCTTCT
CCTACAAACGCCGCTATAGAT
Found at i:8163865 original size:43 final size:43
Alignment explanation
Indices: 8163742--8163870 Score: 131
Period size: 42 Copynumber: 3.1 Consensus size: 43
8163732 CCTCTCCCAC
* * * * **
8163742 AAACGCCGCTAAAGATCATGACTTTTAGCGGCGCTTCTCCTA-
1 AAACGCCGCTAAAGAACACGACTTTTAGCGACGCTTTTTTTAT
* * * *
8163784 CAACGCCGCTATAGATCATGACTTTTAGCGACGCTTTTTTTAT
1 AAACGCCGCTAAAGAACACGACTTTTAGCGACGCTTTTTTTAT
8163827 AAACGCCGCTAAAGAACACGACTTTTAGC-A-GCATTTTTTT-T
1 AAACGCCGCTAAAGAACACGACTTTTAGCGACGC-TTTTTTTAT
8163868 AAA
1 AAA
8163871 AATGCCACTA
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
41 6 0.08
42 44 0.59
43 25 0.33
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACACGACTTTTAGCGACGCTTTTTTTAT
Found at i:8164313 original size:21 final size:21
Alignment explanation
Indices: 8164278--8164323 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
8164268 TTGAACCTTA
* *
8164278 GCTTCTCTCGCTGCTGCCTCT
1 GCTTCTCTCACTGCTGCATCT
* *
8164299 GCTTCTCTCATTGCTGTATCT
1 GCTTCTCTCACTGCTGCATCT
8164320 GCTT
1 GCTT
8164324 TAAATTGTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.04, C:0.35, G:0.17, T:0.43
Consensus pattern (21 bp):
GCTTCTCTCACTGCTGCATCT
Found at i:8164339 original size:87 final size:87
Alignment explanation
Indices: 8164186--8164460 Score: 415
Period size: 87 Copynumber: 3.2 Consensus size: 87
8164176 CTCGTTGTAG
* * * *
8164186 CCTCTGCTTCTCTTGCTGTTGCCTTTGCTTCCCTCACTGCTGCATCTGATTTAAGTTGTAGCTGG
1 CCTCAGCTTCTCTCGCTGCTGCCTCTGCTTCCCTCACTGCTGCATCTGATTTAAGTTGTAGCTGG
8164251 AGTTCTTCATATTTTCTTTGAA
66 AGTTCTTCATATTTTCTTTGAA
* * * * * * *
8164273 CCTTAGCTTCTCTCGCTGCTGCCTCTGCTTCTCTCATTGCTGTATCTGCTTTAAATTGTAGTTGG
1 CCTCAGCTTCTCTCGCTGCTGCCTCTGCTTCCCTCACTGCTGCATCTGATTTAAGTTGTAGCTGG
8164338 AGTTCTTCATATTTTCTTTGAA
66 AGTTCTTCATATTTTCTTTGAA
* * * *
8164360 CCTCATCTTTTCTCGCTGCTGCCTCTACTTCCCTCACTGCTGCATCTGTTTTAAGTTGTAGCTGG
1 CCTCAGCTTCTCTCGCTGCTGCCTCTGCTTCCCTCACTGCTGCATCTGATTTAAGTTGTAGCTGG
8164425 AGTTCTTCATATTTTCTTTGAA
66 AGTTCTTCATATTTTCTTTGAA
8164447 CCTCAGCTTCTCTC
1 CCTCAGCTTCTCTC
8164461 AATGTTGCCT
Statistics
Matches: 165, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 165 1.00
ACGTcount: A:0.13, C:0.27, G:0.16, T:0.44
Consensus pattern (87 bp):
CCTCAGCTTCTCTCGCTGCTGCCTCTGCTTCCCTCACTGCTGCATCTGATTTAAGTTGTAGCTGG
AGTTCTTCATATTTTCTTTGAA
Found at i:8170084 original size:33 final size:32
Alignment explanation
Indices: 8170045--8170124 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 32
8170035 ATTCTAAATT
*
8170045 ATTAAATTAATAATTTATTTTAATTATACT-TAA
1 ATTAAATTAATAATTT-TTCTAATTA-ACTCTAA
* *
8170078 ATTAAATTATTAATTTTTCTATTTAACTCTAA
1 ATTAAATTAATAATTTTTCTAATTAACTCTAA
*
8170110 CTTAAATTAAATAAT
1 ATTAAATT-AATAAT
8170125 AATAATTTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 3 0.08
32 17 0.43
33 20 0.50
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (32 bp):
ATTAAATTAATAATTTTTCTAATTAACTCTAA
Found at i:8170090 original size:36 final size:37
Alignment explanation
Indices: 8170050--8170133 Score: 95
Period size: 36 Copynumber: 2.3 Consensus size: 37
8170040 AAATTATTAA
8170050 ATTAATAATTTAT-TTTAA-T-TATACTTAAATTAAATT
1 ATTAATAATTTATATTTAACTCTA-ACTTAAATTAAA-T
* *
8170086 ATTAAT-TTTTCTATTTAACTCTAACTTAAATTAAAT
1 ATTAATAATTTATATTTAACTCTAACTTAAATTAAAT
*
8170122 AATAATAATTTA
1 ATTAATAATTTA
8170134 AATTAAATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
35 4 0.10
36 17 0.44
37 16 0.41
38 2 0.05
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (37 bp):
ATTAATAATTTATATTTAACTCTAACTTAAATTAAAT
Found at i:8171866 original size:30 final size:30
Alignment explanation
Indices: 8171832--8171889 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
8171822 GTTGTTGGAC
*
8171832 TTAAATT-TTAAAATCTAAAATATAAAAAGG
1 TTAAATTATT-AAATATAAAATATAAAAAGG
8171862 TTAAATTATTAAATATAAAATATAAAAA
1 TTAAATTATTAAATATAAAATATAAAAA
8171890 CTAAAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (30 bp):
TTAAATTATTAAATATAAAATATAAAAAGG
Found at i:8171896 original size:21 final size:22
Alignment explanation
Indices: 8171872--8171917 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
8171862 TTAAATTATT
8171872 AAATATAAAATATA-AAAACTA
1 AAATATAAAATATATAAAACTA
* * *
8171893 AAATTTAAAATTTATAAAAGTA
1 AAATATAAAATATATAAAACTA
8171915 AAA
1 AAA
8171918 AATTTATCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (22 bp):
AAATATAAAATATATAAAACTA
Found at i:8175292 original size:9 final size:9
Alignment explanation
Indices: 8175271--8175303 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
8175261 TCATTTGTGT
8175271 ATTTTTTTC
1 ATTTTTTTC
8175280 --TTTTTTC
1 ATTTTTTTC
8175287 ATTTTTTTC
1 ATTTTTTTC
8175296 ATTTTTTT
1 ATTTTTTT
8175304 ATATCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.32
9 15 0.68
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (9 bp):
ATTTTTTTC
Found at i:8175292 original size:16 final size:17
Alignment explanation
Indices: 8175271--8175302 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8175261 TCATTTGTGT
8175271 ATTTTTTTC-TTTTTTC
1 ATTTTTTTCATTTTTTC
8175287 ATTTTTTTCATTTTTT
1 ATTTTTTTCATTTTTT
8175303 TATATCTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81
Consensus pattern (17 bp):
ATTTTTTTCATTTTTTC
Found at i:8175365 original size:140 final size:144
Alignment explanation
Indices: 8175184--8175471 Score: 478
Period size: 140 Copynumber: 2.0 Consensus size: 144
8175174 CTACTATACT
*
8175184 TATTCTCCCCATTAAATCAAATATTTTAGTATTATTATACAGTATTATTATTTCTTGTTGATATT
1 TATTCTCCCCATTAAATCAAATATTTTAGTATTATTATACAGTATTATTACTTCTTGTTGATATT
8175249 ATTATCTTTATTTCATTTGTGTATTTTTTTCTT-TTTTC-ATTTT-TTTCA-TTT-TTTTATATC
66 ATTATCTTTATTTCATTTGTGTA-TTTTTTCTTCTTTTCTATTTTATTTCATTTTATTTTATATC
8175309 TAAAAGATTATTATA
130 TAAAAGATTATTATA
8175324 TATTCTCCCCATTAAATCAAATATTTTAGTATTATTATACAGTATTATTACTTCTTGTTGATATT
1 TATTCTCCCCATTAAATCAAATATTTTAGTATTATTATACAGTATTATTACTTCTTGTTGATATT
* * * *
8175389 ATTGTCTTTATTTCATTTGTGTATTTTTTCTTCTTTTCTTTTTTTATTTTATTTTATTTTATGTC
66 ATTATCTTTATTTCATTTGTGTATTTTTTCTTCTTTTC-TATTTTATTTCATTTTATTTTATATC
8175454 TAAAAGATTATTATA
130 TAAAAGATTATTATA
8175469 TAT
1 TAT
8175472 GTATATGTAT
Statistics
Matches: 137, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
139 9 0.07
140 91 0.66
142 4 0.03
143 4 0.03
144 3 0.02
145 26 0.19
ACGTcount: A:0.26, C:0.10, G:0.06, T:0.59
Consensus pattern (144 bp):
TATTCTCCCCATTAAATCAAATATTTTAGTATTATTATACAGTATTATTACTTCTTGTTGATATT
ATTATCTTTATTTCATTTGTGTATTTTTTCTTCTTTTCTATTTTATTTCATTTTATTTTATATCT
AAAAGATTATTATA
Found at i:8175662 original size:26 final size:25
Alignment explanation
Indices: 8175629--8175678 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
8175619 TATAGATACC
*
8175629 TTATTATAAATATCTTTATATCTTA
1 TTATTATAAATATCTATATATCTTA
* *
8175654 TTATGTATATATATCTATATCTCTT
1 TTAT-TATAAATATCTATATATCTT
8175679 TTTAAATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (25 bp):
TTATTATAAATATCTATATATCTTA
Found at i:8175784 original size:4 final size:5
Alignment explanation
Indices: 8175759--8175788 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
8175749 GCCTATAAAC
8175759 TTTTA TTTTA TTTTA TTTTA -TTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
8175789 ATATATACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:8175882 original size:12 final size:12
Alignment explanation
Indices: 8175859--8175892 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8175849 ATTTTTATAG
*
8175859 CCTTATTCATTT
1 CCTTATTTATTT
*
8175871 CTTTATTTATTT
1 CCTTATTTATTT
8175883 CCTTATTTAT
1 CCTTATTTAT
8175893 ATTTTCATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.65
Consensus pattern (12 bp):
CCTTATTTATTT
Found at i:8182236 original size:20 final size:20
Alignment explanation
Indices: 8182195--8182237 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
8182185 TTTTTAATAG
* *
8182195 TAATTTAATTTTTATCATAA
1 TAATTTAATTGTTATCAAAA
8182215 TAATCTTAATTGTTAT-AAAA
1 TAAT-TTAATTGTTATCAAAA
8182235 TAA
1 TAA
8182238 AGAGAGATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (20 bp):
TAATTTAATTGTTATCAAAA
Found at i:8186642 original size:66 final size:66
Alignment explanation
Indices: 8186560--8186691 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
8186550 ATAAGAAGTA
8186560 TAAATGAAGTAGAGATCTAATTCTAATGACTATTAGATTTTAAAGTACGTCAAAACTTATCTTGA
1 TAAATGAAGTAGAGATCTAATTCTAATGACTATTAGATTTTAAAGTACGTCAAAACTTATCTTGA
8186625 T
66 T
8186626 TAAATGAAGTAGAGATCTAATTCTAATGACTATTAGATTTTAAAGTACGTCAAAACTTATCTTGA
1 TAAATGAAGTAGAGATCTAATTCTAATGACTATTAGATTTTAAAGTACGTCAAAACTTATCTTGA
8186691 T
66 T
8186692 CTTGATGGAC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (66 bp):
TAAATGAAGTAGAGATCTAATTCTAATGACTATTAGATTTTAAAGTACGTCAAAACTTATCTTGA
T
Found at i:8188518 original size:15 final size:15
Alignment explanation
Indices: 8188483--8188511 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8188473 GAGCTTATTT
8188483 CAAATTTTTATGCCC
1 CAAATTTTTATGCCC
8188498 CAAATTTTTATGCC
1 CAAATTTTTATGCC
8188512 TTAAATTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (15 bp):
CAAATTTTTATGCCC
Found at i:8199345 original size:12 final size:12
Alignment explanation
Indices: 8199328--8199352 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8199318 TCACCCACAT
8199328 ATTTCTTTTGAA
1 ATTTCTTTTGAA
8199340 ATTTCTTTTGAA
1 ATTTCTTTTGAA
8199352 A
1 A
8199353 GAATTCCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (12 bp):
ATTTCTTTTGAA
Found at i:8202278 original size:13 final size:14
Alignment explanation
Indices: 8202252--8202282 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
8202242 CTAGTAGTCC
8202252 TTCTTTCTTTTTCT
1 TTCTTTCTTTTTCT
8202266 TTCTTTC-TTTTCT
1 TTCTTTCTTTTTCT
8202279 TTCT
1 TTCT
8202283 CAATTTTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (14 bp):
TTCTTTCTTTTTCT
Found at i:8202345 original size:22 final size:25
Alignment explanation
Indices: 8202317--8202373 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
8202307 TCTTTGTTTC
8202317 ATTTACTTATT-TGT-T-TTAT-TAT
1 ATTTACTTATTAT-TATATTATATAT
8202339 ATTTACTTTATTATTATATTATATAT
1 ATTTAC-TTATTATTATATTATATAT
8202365 ATTTACTTA
1 ATTTACTTA
8202374 AATATTAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
22 6 0.20
23 6 0.20
24 2 0.07
25 7 0.23
26 9 0.30
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (25 bp):
ATTTACTTATTATTATATTATATAT
Found at i:8202379 original size:26 final size:25
Alignment explanation
Indices: 8202332--8202380 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
8202322 CTTATTTGTT
* *
8202332 TTATTATATTTACTTTATTATTATA
1 TTATTATATTTACTTAAATATTATA
8202357 TTATATATATTTACTTAAATATTA
1 TTAT-TATATTTACTTAAATATTA
8202381 AGTAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
TTATTATATTTACTTAAATATTATA
Found at i:8202968 original size:8 final size:8
Alignment explanation
Indices: 8202955--8202980 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
8202945 TTATCAGCTC
8202955 TTATTATT
1 TTATTATT
8202963 TTATTATT
1 TTATTATT
8202971 TTATTATT
1 TTATTATT
8202979 TT
1 TT
8202981 TGATTCCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTATTATT
Found at i:8218270 original size:18 final size:18
Alignment explanation
Indices: 8218244--8218279 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8218234 AACAATATGC
*
8218244 AAAAGTGGTATCAATAAA
1 AAAAATGGTATCAATAAA
*
8218262 AAAAATGGTATCGATAAA
1 AAAAATGGTATCAATAAA
8218280 TTCAATAGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.17, T:0.22
Consensus pattern (18 bp):
AAAAATGGTATCAATAAA
Found at i:8218380 original size:57 final size:57
Alignment explanation
Indices: 8218308--8218430 Score: 237
Period size: 57 Copynumber: 2.2 Consensus size: 57
8218298 ATTTAGAAAA
*
8218308 GTATCGATACTTATTGCTTTTGTTCAATTTTTTTATTAAAGTCAATGAGCAATTTTG
1 GTATCGATACTTATTGCTTTTGTTCAATTTTTTTATTAAAGTCAACGAGCAATTTTG
8218365 GTATCGATACTTATTGCTTTTGTTCAATTTTTTTATTAAAGTCAACGAGCAATTTTG
1 GTATCGATACTTATTGCTTTTGTTCAATTTTTTTATTAAAGTCAACGAGCAATTTTG
8218422 GTATCGATA
1 GTATCGATA
8218431 ATAATCATAT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 65 1.00
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.47
Consensus pattern (57 bp):
GTATCGATACTTATTGCTTTTGTTCAATTTTTTTATTAAAGTCAACGAGCAATTTTG
Found at i:8220317 original size:43 final size:41
Alignment explanation
Indices: 8220246--8220343 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 41
8220236 TTTTTTAATT
* * * * *
8220246 ATATACAAAATTAATTTATAAATTAAAAATTTATCTCTTTA
1 ATATACAAAGTAAATTTATAAATAAAAAAATGATCTCTTTA
* *
8220287 ATATATAAAGTAAATTTATGAAATAAAAAAAATGATGTCTTTA
1 ATATACAAAGTAAATTTAT-AAAT-AAAAAAATGATCTCTTTA
8220330 ATATACAAAGTAAA
1 ATATACAAAGTAAA
8220344 AGATATGTAT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 16 0.34
42 4 0.09
43 27 0.57
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (41 bp):
ATATACAAAGTAAATTTATAAATAAAAAAATGATCTCTTTA
Found at i:8221695 original size:6 final size:6
Alignment explanation
Indices: 8221684--8221708 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8221674 AAATCCGACT
8221684 CTAAAC CTAAAC CTAAAC CTAAAC C
1 CTAAAC CTAAAC CTAAAC CTAAAC C
8221709 GCTGTATAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (6 bp):
CTAAAC
Found at i:8222931 original size:2 final size:2
Alignment explanation
Indices: 8222924--8222952 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8222914 CGTGTGGTTT
8222924 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
8222953 CATTATGTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8225945 original size:21 final size:21
Alignment explanation
Indices: 8225907--8225946 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8225897 AAACAAAATG
*
8225907 TATATTCCATAAATACAATAA
1 TATATTCCATAAAAACAATAA
8225928 TATATTCCA-AATAAACAAT
1 TATATTCCATAA-AAACAAT
8225947 CATCAAACTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.33
Consensus pattern (21 bp):
TATATTCCATAAAAACAATAA
Found at i:8229980 original size:18 final size:17
Alignment explanation
Indices: 8229957--8230000 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
8229947 TATATCTTTT
8229957 TAAAAATATTAATTACT-A
1 TAAAAATATTAA-TA-TGA
8229975 TAAAAATTATTAATATGA
1 TAAAAA-TATTAATATGA
8229993 TAAAAATA
1 TAAAAATA
8230001 ATTTCTAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 3 0.12
18 15 0.62
19 6 0.25
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (17 bp):
TAAAAATATTAATATGA
Found at i:8234974 original size:22 final size:22
Alignment explanation
Indices: 8234946--8234988 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
8234936 AAGAGTAAAA
8234946 CAAGAAAAAAATTGACATACCC
1 CAAGAAAAAAATTGACATACCC
8234968 CAAGAAAAAAATTGACATACC
1 CAAGAAAAAAATTGACATACC
8234989 TTTTCTTGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.56, C:0.21, G:0.09, T:0.14
Consensus pattern (22 bp):
CAAGAAAAAAATTGACATACCC
Found at i:8236607 original size:9 final size:9
Alignment explanation
Indices: 8236595--8236631 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
8236585 CTTTAACATA
*
8236595 AAATTAAAT
1 AAATAAAAT
8236604 AAATAAAAT
1 AAATAAAAT
8236613 AAATAAAAT
1 AAATAAAAT
8236622 -AATAAAAT
1 AAATAAAAT
8236630 AA
1 AA
8236632 GATTTTTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 8 0.31
9 18 0.69
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
AAATAAAAT
Found at i:8237392 original size:4 final size:4
Alignment explanation
Indices: 8237383--8237420 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
8237373 TAAGTTGAAC
*
8237383 ATTT ATTT ATTT ATTT -TTC ATTTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT A-TTT ATTT ATTT ATTT AT
8237421 GTACAAGCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
3 2 0.07
4 25 0.83
5 3 0.10
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:8239625 original size:26 final size:26
Alignment explanation
Indices: 8239589--8239639 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
8239579 CCTATAATTG
*
8239589 AACAAATAACACCATAATTAGTCTTT
1 AACAAATAACACCATAATCAGTCTTT
8239615 AACAAATAACACCATAATCAGTCTT
1 AACAAATAACACCATAATCAGTCTT
8239640 ACCTCACGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.47, C:0.22, G:0.04, T:0.27
Consensus pattern (26 bp):
AACAAATAACACCATAATCAGTCTTT
Found at i:8250883 original size:41 final size:41
Alignment explanation
Indices: 8250806--8250937 Score: 117
Period size: 41 Copynumber: 3.3 Consensus size: 41
8250796 ATTTTACTAG
* * **
8250806 ATTCAAGGTTACCAAAGTGTAAAC-AGGGCA-AGTATGTGCA
1 ATTCAAGGGTACCGAAGTACAAACAAGGGCACA-TATGTGCA
* ** * * *
8250846 ATTCAAGGTTGTCGAAGTACTAACAAGGGCACTTATGTGTA
1 ATTCAAGGGTACCGAAGTACAAACAAGGGCACATATGTGCA
* *
8250887 ATTCAGGGGTACCGAAGTACAAACAGGGGCACATATGTGCA
1 ATTCAAGGGTACCGAAGTACAAACAAGGGCACATATGTGCA
*
8250928 ATAC-AGGGTA
1 ATTCAAGGGTA
8250938 TAAATAATTA
Statistics
Matches: 72, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
40 23 0.32
41 49 0.68
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.23
Consensus pattern (41 bp):
ATTCAAGGGTACCGAAGTACAAACAAGGGCACATATGTGCA
Found at i:8251180 original size:17 final size:17
Alignment explanation
Indices: 8251130--8251196 Score: 50
Period size: 17 Copynumber: 3.9 Consensus size: 17
8251120 AAATAATTAT
* *
8251130 ATTCAATTAAGTATTTCA
1 ATTCAATTCA-TAATTCA
8251148 A-TCAATCTCA-ACATTCA
1 ATTCAAT-TCATA-ATTCA
8251165 ATTCAATTCATAATTCA
1 ATTCAATTCATAATTCA
*
8251182 CATT-AATGCATAATT
1 -ATTCAATTCATAATT
8251197 ATAATTTTCC
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
16 1 0.02
17 28 0.68
18 12 0.29
ACGTcount: A:0.40, C:0.18, G:0.03, T:0.39
Consensus pattern (17 bp):
ATTCAATTCATAATTCA
Found at i:8254994 original size:285 final size:286
Alignment explanation
Indices: 8254477--8255052 Score: 969
Period size: 285 Copynumber: 2.0 Consensus size: 286
8254467 CCCCATTGAA
* *
8254477 ATTTT-AGATGTAAATTGGTGGACTCTATTCAATTTACTTACAATTTTCACTTAGTAAAACAGTA
1 ATTTTGAGATGTAAATTAGTGGACTCTATTCAATTTACTTACAATTTTCACTTAGTAAAACAATA
* *
8254541 CCTATATGAATAAGTATAGTGCTTTCTTTCTTTCTTTCTTTCTTTTTTGTCATTTTAAACCTAAA
66 CCTATATGAACAAGTATAGTGCTTTCTTTCATTCTTTCTTTCTTTTTTGTCATTTTAAACCTAAA
* * *
8254606 CAAATCATGCTTATATAAGAGTTAATCAGGCTTGTTAAATTACAATTGATTACAGTCAATTAATT
131 CAAATCATGCTTATATAAGAGTTAATCAGGCTTGTTAAATTACAATCGATTACAATAAATTAATT
* *
8254671 TCACTGAAGTAACGACAAAAACAAGTCTTCAATACCCTTCATAAAGGTAGAGATCTTTTAGGCAT
196 TCACTAAAGTAACGACAAAAACAAGTCTTCAATACCCTTCACAAAGGTAGAGATCTTTTAGGCAT
*
8254736 CAGTCTCCTTGAAGATCAAATCTTCT
261 CAATCTCCTTGAAGATCAAATCTTCT
* *
8254762 GATTTTGAGATGTAAATTAGTGGGCTCTATTCAGTTTACTTACAATTTTCACTTAGTAAAACAAT
1 -ATTTTGAGATGTAAATTAGTGGACTCTATTCAATTTACTTACAATTTTCACTTAGTAAAACAAT
*
8254827 ACCTATATGAACAAGTATAGTGCTTTCTTTCATTCTTTCTTTC-TTTTT-TCATTTTTAACCTAA
65 ACCTATATGAACAAGTATAGTGCTTTCTTTCATTCTTTCTTTCTTTTTTGTCATTTTAAACCTAA
* * *
8254890 ATAAATCGTGCTTATATAAGAGTTAATTAGGCTTGTTAAATTACAATCGATTACAATAAATTAAT
130 ACAAATCATGCTTATATAAGAGTTAATCAGGCTTGTTAAATTACAATCGATTACAATAAATTAAT
8254955 TTCACTAAAGTAACGACAAAAACAAGTCTTCAATACCCTTCACAAAGGTAGAGATCTTTTAGGCA
195 TTCACTAAAGTAACGACAAAAACAAGTCTTCAATACCCTTCACAAAGGTAGAGATCTTTTAGGCA
*
8255020 TCAATCTCCTTGAAGATGAAATCTTCT
260 TCAATCTCCTTGAAGATCAAATCTTCT
8255047 ATTTTG
1 ATTTTG
8255053 GGAACTTGGA
Statistics
Matches: 272, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
284 6 0.02
285 161 0.59
286 10 0.04
287 95 0.35
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (286 bp):
ATTTTGAGATGTAAATTAGTGGACTCTATTCAATTTACTTACAATTTTCACTTAGTAAAACAATA
CCTATATGAACAAGTATAGTGCTTTCTTTCATTCTTTCTTTCTTTTTTGTCATTTTAAACCTAAA
CAAATCATGCTTATATAAGAGTTAATCAGGCTTGTTAAATTACAATCGATTACAATAAATTAATT
TCACTAAAGTAACGACAAAAACAAGTCTTCAATACCCTTCACAAAGGTAGAGATCTTTTAGGCAT
CAATCTCCTTGAAGATCAAATCTTCT
Found at i:8257094 original size:25 final size:25
Alignment explanation
Indices: 8257036--8257119 Score: 66
Period size: 25 Copynumber: 3.4 Consensus size: 25
8257026 TCATTTATAT
* *
8257036 ATTATTATAATTTATATACTTTTTT-
1 ATTATAATACTTTATATA-TTTTTTC
* *
8257061 -TTAAAAATACTTTA-ATATTATTTTT
1 ATT-ATAATACTTTATATATT-TTTTC
* *
8257086 ATTTTAATATTTTATATATTTTTTC
1 ATTATAATACTTTATATATTTTTTC
8257111 ATTATAATA
1 ATTATAATA
8257120 AATTTTATAA
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
23 2 0.04
24 9 0.20
25 28 0.61
26 7 0.15
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (25 bp):
ATTATAATACTTTATATATTTTTTC
Found at i:8263468 original size:25 final size:26
Alignment explanation
Indices: 8263427--8263487 Score: 79
Period size: 25 Copynumber: 2.3 Consensus size: 26
8263417 TTTAAAATAC
* *
8263427 TTTTAAAATAATTTTTTTATTTTTTAT
1 TTTTAAAATAA-TTTTTTAATGTTTAT
8263454 TTTTAAAATAA-TTTTTAATGTTTAT
1 TTTTAAAATAATTTTTTAATGTTTAT
*
8263479 TTTAAAAAT
1 TTTTAAAAT
8263488 GGGCCGGGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 20 0.65
27 11 0.35
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (26 bp):
TTTTAAAATAATTTTTTAATGTTTAT
Found at i:8264883 original size:25 final size:25
Alignment explanation
Indices: 8264846--8264906 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
8264836 TCTAAATTTT
* * *
8264846 ATATTTATAAATTTTTAATAATTTCAA
1 ATATTT-TTAATTTGTAAT-ATTTAAA
*
8264873 AT-TTTTTAATTTGTAATTTTTAAA
1 ATATTTTTAATTTGTAATATTTAAA
8264897 ATATTTTTAA
1 ATATTTTTAA
8264907 ATAAACTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 7 0.24
25 17 0.59
26 3 0.10
27 2 0.07
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (25 bp):
ATATTTTTAATTTGTAATATTTAAA
Found at i:8271849 original size:17 final size:17
Alignment explanation
Indices: 8271827--8271870 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 17
8271817 CCCTTGGAGA
8271827 AGGAAAATCGATACCTT
1 AGGAAAATCGATACCTT
8271844 AGGAAATATATCGATACCTT
1 AGG-AA-A-ATCGATACCTT
*
8271864 AAGAAAA
1 AGGAAAA
8271871 ATATCGATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
17 4 0.17
18 3 0.13
19 3 0.13
20 13 0.57
ACGTcount: A:0.48, C:0.14, G:0.16, T:0.23
Consensus pattern (17 bp):
AGGAAAATCGATACCTT
Found at i:8271858 original size:20 final size:20
Alignment explanation
Indices: 8271833--8271880 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
8271823 GAGAAGGAAA
* *
8271833 ATCGATACCTTAGGAAATAT
1 ATCGATACCTTAAGAAAAAT
8271853 ATCGATACCTTAAGAAAAAT
1 ATCGATACCTTAAGAAAAAT
8271873 ATCGATAC
1 ATCGATAC
8271881 TAGATCGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.44, C:0.17, G:0.12, T:0.27
Consensus pattern (20 bp):
ATCGATACCTTAAGAAAAAT
Found at i:8278352 original size:15 final size:16
Alignment explanation
Indices: 8278332--8278371 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
8278322 TAACGTTTCA
8278332 AGAATAACTA-TATTT
1 AGAATAACTATTATTT
*
8278347 AGAATAACCATTATTT
1 AGAATAACTATTATTT
*
8278363 AGAACAACT
1 AGAATAACT
8278372 TGTATTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.33
Consensus pattern (16 bp):
AGAATAACTATTATTT
Found at i:8278363 original size:16 final size:15
Alignment explanation
Indices: 8278332--8278366 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8278322 TAACGTTTCA
*
8278332 AGAATAACTATATTT
1 AGAATAACCATATTT
8278347 AGAATAACCATTATTT
1 AGAATAACCA-TATTT
8278363 AGAA
1 AGAA
8278367 CAACTTGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.34
Consensus pattern (15 bp):
AGAATAACCATATTT
Found at i:8280209 original size:5 final size:5
Alignment explanation
Indices: 8280199--8280224 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8280189 GAACAAATAT
8280199 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
8280225 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:8284819 original size:2 final size:2
Alignment explanation
Indices: 8284814--8284844 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8284804 ACATATATAA
*
8284814 CT CT CT CT CT CT CT CT CT CT CT CC CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
8284845 CCCGATATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (2 bp):
CT
Found at i:8287982 original size:27 final size:26
Alignment explanation
Indices: 8287939--8287989 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
8287929 TCTTGCTTGC
8287939 AATTAAAAATGACAAATCATTCAATCT
1 AATTAAAAATGACAAATCA-TCAATCT
*
8287966 AATTAAAAATCG-TAAATCATCAAT
1 AATTAAAAAT-GACAAATCATCAAT
8287990 AACATTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 5 0.23
27 16 0.73
28 1 0.05
ACGTcount: A:0.53, C:0.14, G:0.04, T:0.29
Consensus pattern (26 bp):
AATTAAAAATGACAAATCATCAATCT
Found at i:8295136 original size:17 final size:17
Alignment explanation
Indices: 8295114--8295150 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
8295104 TATGTGGCTT
8295114 AATTTTAGGTTATCATC
1 AATTTTAGGTTATCATC
**
8295131 AATTTTCTGTTATCATC
1 AATTTTAGGTTATCATC
8295148 AAT
1 AAT
8295151 ATGTGGCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.30, C:0.14, G:0.08, T:0.49
Consensus pattern (17 bp):
AATTTTAGGTTATCATC
Found at i:8300320 original size:50 final size:51
Alignment explanation
Indices: 8300220--8300320 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 51
8300210 CTATTATAGG
8300220 AAGGAAATAATCTATTGAGAAAGGAAAAAAAACCCTAGTGTGAATGAGAAT
1 AAGGAAATAATCTATTGAGAAAGGAAAAAAAACCCTAGTGTGAATGAGAAT
8300271 AAGGAAATAATCTATTGAGAAAGG-AAAAAAACCCTAGTGTGAATGAGAAT
1 AAGGAAATAATCTATTGAGAAAGGAAAAAAAACCCTAGTGTGAATGAGAAT
8300321 GAAGACGATG
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 26 0.52
51 24 0.48
ACGTcount: A:0.50, C:0.08, G:0.22, T:0.20
Consensus pattern (51 bp):
AAGGAAATAATCTATTGAGAAAGGAAAAAAAACCCTAGTGTGAATGAGAAT
Found at i:8303272 original size:24 final size:24
Alignment explanation
Indices: 8303227--8303337 Score: 73
Period size: 24 Copynumber: 4.5 Consensus size: 24
8303217 TACGAGCCTA
*
8303227 TAACGGGTAGCTCCAAAGAGCCAT
1 TAACGGGAAGCTCCAAAGAGCCAT
** *
8303251 TAACGGGAAGCTCCGGATAGCCAT
1 TAACGGGAAGCTCCAAAGAGCCAT
* * * *
8303275 ATATCAGGAAG-TTCAAGCGAGCCA-
1 -TAACGGGAAGCTCCAA-AGAGCCAT
*
8303299 TATCGGGAAGCTCACAAAGAGCCAAT
1 TAACGGGAAGCTC-CAAAGAGCC-AT
**
8303325 TAATAGGAAGCTC
1 TAACGGGAAGCTC
8303338 ATGAAGAGCC
Statistics
Matches: 64, Mismatches: 17, Indels: 10
0.70 0.19 0.11
Matches are distributed among these distances:
23 9 0.14
24 28 0.44
25 17 0.27
26 10 0.16
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (24 bp):
TAACGGGAAGCTCCAAAGAGCCAT
Found at i:8303317 original size:73 final size:75
Alignment explanation
Indices: 8303200--8303337 Score: 185
Period size: 73 Copynumber: 1.9 Consensus size: 75
8303190 TCATAAGAGC
* *
8303200 TATATTCAGGAAGCTCATACGAGCCTATAACGGGTAGCTCCAAAGAGCC-ATTAACGGGAAGCTC
1 TATATTCAGGAAGCTCATACGAGCCTATAACGGGAAGCTCCAAAGAGCCAATTAACAGGAAGCTC
8303264 CGGATAGCCA
66 CGGATAGCCA
* * *
8303274 TATA-TCAGGAAGTTCA-AGCGAGCC-ATATCGGGAAGCTCACAAAGAGCCAATTAATAGGAAGC
1 TATATTCAGGAAGCTCATA-CGAGCCTATAACGGGAAGCTC-CAAAGAGCCAATTAACAGGAAGC
8303336 TC
64 TC
8303338 ATGAAGAGCC
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
72 13 0.23
73 26 0.46
74 17 0.30
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (75 bp):
TATATTCAGGAAGCTCATACGAGCCTATAACGGGAAGCTCCAAAGAGCCAATTAACAGGAAGCTC
CGGATAGCCA
Found at i:8310254 original size:42 final size:42
Alignment explanation
Indices: 8310190--8310278 Score: 169
Period size: 42 Copynumber: 2.1 Consensus size: 42
8310180 AGCTTCTCAT
*
8310190 GTTGGATATATGAGATAGCAAACCCTAGTATATTTAACTAGG
1 GTTGAATATATGAGATAGCAAACCCTAGTATATTTAACTAGG
8310232 GTTGAATATATGAGATAGCAAACCCTAGTATATTTAACTAGG
1 GTTGAATATATGAGATAGCAAACCCTAGTATATTTAACTAGG
8310274 GTTGA
1 GTTGA
8310279 TAAGTTTTAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.31
Consensus pattern (42 bp):
GTTGAATATATGAGATAGCAAACCCTAGTATATTTAACTAGG
Found at i:8310836 original size:18 final size:18
Alignment explanation
Indices: 8310802--8310836 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8310792 ATTTATTGAA
* *
8310802 TTGATTATTTGGGCTATG
1 TTGATTATATGGACTATG
8310820 TTGATTATATGGACTAT
1 TTGATTATATGGACTAT
8310837 ATCTAGCTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.23, T:0.49
Consensus pattern (18 bp):
TTGATTATATGGACTATG
Found at i:8312182 original size:42 final size:43
Alignment explanation
Indices: 8312136--8312273 Score: 167
Period size: 42 Copynumber: 3.3 Consensus size: 43
8312126 TACACCGACT
*
8312136 TTAAGCCTGCTAGACT-TATAGTCCGAATTTATTTCACCGGCA
1 TTAAGCCTGCTAGACTGTAAAGTCCGAATTTATTTCACCGGCA
* *
8312178 TTAAGCCTGCTAGA-TGTAAAGTCTGAATTTATTTGACCGGCA
1 TTAAGCCTGCTAGACTGTAAAGTCCGAATTTATTTCACCGGCA
* ** *
8312220 TTAAGCCTGCTAGAC-GTAAAGTCTGAA-TGGTTTCACTGGCA
1 TTAAGCCTGCTAGACTGTAAAGTCCGAATTTATTTCACCGGCA
**
8312261 ACAAGCCTGCTAG
1 TTAAGCCTGCTAG
8312274 GTACTGAGCC
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
41 22 0.26
42 63 0.74
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (43 bp):
TTAAGCCTGCTAGACTGTAAAGTCCGAATTTATTTCACCGGCA
Found at i:8315005 original size:26 final size:26
Alignment explanation
Indices: 8314947--8315007 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
8314937 TGTAAATTAT
* * * *
8314947 TTAATTAAATTAATTATTTTTATTGG
1 TTAATTAAATAAATAATTTTAATTGA
* *
8314973 TTGATTAAATAAATAATTTTAATTTA
1 TTAATTAAATAAATAATTTTAATTGA
8314999 TTAATTAAA
1 TTAATTAAA
8315008 ATTAATGTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (26 bp):
TTAATTAAATAAATAATTTTAATTGA
Found at i:8322794 original size:21 final size:21
Alignment explanation
Indices: 8322770--8322809 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
8322760 ACTTTTTCTA
8322770 AAGTTAA-AAGTCAAAACCATT
1 AAGTTAATAAG-CAAAACCATT
8322791 AAGTTAATAAGCAAAACCA
1 AAGTTAATAAGCAAAACCA
8322810 CGTTATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.55, C:0.15, G:0.10, T:0.20
Consensus pattern (21 bp):
AAGTTAATAAGCAAAACCATT
Found at i:8331943 original size:44 final size:45
Alignment explanation
Indices: 8331890--8331992 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
8331880 TGTCTTTGAC
* * *
8331890 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** * *
8331934 ATGGACTTACATGGCTCAATCTTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
8331980 ATGGACTTACATG
1 ATGGACTTACATG
8331993 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.64
46 18 0.36
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:8331991 original size:46 final size:44
Alignment explanation
Indices: 8331912--8331997 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
8331902 GAATTATTCC
*
8331912 TGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAATCT
1 TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCT
*
8331956 TGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TGTCTCCAAAGCCATA--TATAATATGGACTTACATGGCTCA
8331998 TTTCTGTTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 15 0.39
46 23 0.61
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (44 bp):
TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCT
Found at i:8332371 original size:30 final size:30
Alignment explanation
Indices: 8332337--8332394 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
8332327 CCTCGACTCT
*
8332337 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
8332367 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
8332395 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:8332990 original size:17 final size:19
Alignment explanation
Indices: 8332964--8333002 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
8332954 TTCTATTCTG
*
8332964 TTTCTTTTCTTT-TTTT-T
1 TTTCTATTCTTTCTTTTGT
8332981 TTTCTATTCTTTCTTTTGT
1 TTTCTATTCTTTCTTTTGT
8333000 TTT
1 TTT
8333003 ATGTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 4 0.21
19 4 0.21
ACGTcount: A:0.03, C:0.13, G:0.03, T:0.82
Consensus pattern (19 bp):
TTTCTATTCTTTCTTTTGT
Found at i:8333019 original size:5 final size:5
Alignment explanation
Indices: 8333006--8333078 Score: 64
Period size: 5 Copynumber: 14.6 Consensus size: 5
8332996 TTGTTTTATG
8333006 TATATA TATAA TATAA TATAA TAT-A T-TAA TAATAA TATAA TATAA -A-AA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA
* *
8333054 CATAA TCATTAC TATAA TATAA TAT
1 TATAA T-A-TAA TATAA TATAA TAT
8333079 TTTTTTAACA
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.05
4 6 0.11
5 35 0.61
6 10 0.18
7 3 0.05
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:8333031 original size:19 final size:19
Alignment explanation
Indices: 8333007--8333049 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
8332997 TGTTTTATGT
8333007 ATATATATAAT-ATAATATA
1 ATATAT-TAATAATAATATA
8333026 ATATATTAATAATAATATA
1 ATATATTAATAATAATATA
8333045 ATATA
1 ATATA
8333050 AAAACATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
ATATATTAATAATAATATA
Found at i:8333059 original size:24 final size:25
Alignment explanation
Indices: 8333013--8333077 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 25
8333003 ATGTATATAT
* *
8333013 ATAATATAATATAATATATTAAT-A
1 ATAATATAATATAATAAAATAATCA
8333037 ATAATATAATATAA-AAACATAATCA
1 ATAATATAATATAATAAA-ATAATCA
* *
8333062 TTACTATAATATAATA
1 ATAATATAATATAATA
8333078 TTTTTTTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 2 0.06
24 18 0.53
25 13 0.38
26 1 0.03
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (25 bp):
ATAATATAATATAATAAAATAATCA
Found at i:8333990 original size:22 final size:22
Alignment explanation
Indices: 8333956--8334017 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
8333946 GGCCCGGCCC
*
8333956 ATTTTTAATTAAAATTAAAATTA
1 ATTTTTAA-TAAAATTAAAACTA
*
8333979 TTTTTTAATAAAATTAAAACTA
1 ATTTTTAATAAAATTAAAACTA
* *
8334001 ATTGTTATTAAAATTAA
1 ATTTTTAATAAAATTAA
8334018 TTGTTAGTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 27 0.79
23 7 0.21
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (22 bp):
ATTTTTAATAAAATTAAAACTA
Found at i:8334030 original size:16 final size:16
Alignment explanation
Indices: 8333993--8334032 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
8333983 TTAATAAAAT
* *
8333993 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
8334009 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
8334025 TAAAATTA
1 TAAAATTA
8334033 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:8334091 original size:66 final size:67
Alignment explanation
Indices: 8334021--8334163 Score: 252
Period size: 68 Copynumber: 2.1 Consensus size: 67
8334011 AAATTAATTG
*
8334021 TTAGTAAAATTATCAAATTATTAATTG-TTAATTGTATTAATTGTTGTAATAAAATCTAACATTT
1 TTAGTAAAATTATCAAATTATTAATTGATTAATTGTATTAATTGTTGTAACAAAATCTAACATTT
8334085 GA
66 GA
*
8334087 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
1 TTAGTAAAATTATCAAATTATTAATTG-ATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
8334152 TGA
65 TGA
8334155 TTAGTAAAA
1 TTAGTAAAA
8334164 CAAACTTGAT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
66 26 0.36
68 46 0.64
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.45
Consensus pattern (67 bp):
TTAGTAAAATTATCAAATTATTAATTGATTAATTGTATTAATTGTTGTAACAAAATCTAACATTT
GA
Found at i:8334117 original size:9 final size:9
Alignment explanation
Indices: 8334105--8334132 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
8334095 TTTATCAAAT
8334105 TATTAATTG
1 TATTAATTG
8334114 TATTAATTG
1 TATTAATTG
8334123 TATTAATTG
1 TATTAATTG
8334132 T
1 T
8334133 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:8334270 original size:23 final size:24
Alignment explanation
Indices: 8334229--8334273 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
8334219 AAATAAACTT
* *
8334229 AAAATAAAAAACTATTATATTTTA
1 AAAATAAAAAACAAATATATTTTA
8334253 AAAATAAAAAA-AAATATATTT
1 AAAATAAAAAACAAATATATTT
8334274 AATAATTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (24 bp):
AAAATAAAAAACAAATATATTTTA
Found at i:8339103 original size:9 final size:9
Alignment explanation
Indices: 8339089--8339134 Score: 83
Period size: 9 Copynumber: 5.1 Consensus size: 9
8339079 TATAGTTTGA
8339089 TATTCGAAT
1 TATTCGAAT
8339098 TATTCGAAT
1 TATTCGAAT
8339107 TATTCGAAT
1 TATTCGAAT
*
8339116 TATTCGAGT
1 TATTCGAAT
8339125 TATTCGAAT
1 TATTCGAAT
8339134 T
1 T
8339135 CGAAAACTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:8350752 original size:29 final size:29
Alignment explanation
Indices: 8350719--8350776 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
8350709 TTTTTTAGTG
8350719 TTGGGGGTGTAAATTAGCCGTTAGGAAGT
1 TTGGGGGTGTAAATTAGCCGTTAGGAAGT
* *
8350748 TTGGGGGTGTGAATTAGCCGTTGGGAAGT
1 TTGGGGGTGTAAATTAGCCGTTAGGAAGT
8350777 AACTGTTGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.21, C:0.07, G:0.41, T:0.31
Consensus pattern (29 bp):
TTGGGGGTGTAAATTAGCCGTTAGGAAGT
Found at i:8351672 original size:34 final size:35
Alignment explanation
Indices: 8351628--8351694 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
8351618 CAGTAAAATA
* *
8351628 TTTTCCGTAAAATGATTT-TTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
8351662 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
8351695 CTGTGTTTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.31, C:0.07, G:0.13, T:0.48
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:8358608 original size:22 final size:22
Alignment explanation
Indices: 8358583--8358643 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 22
8358573 AATGATTATC
*
8358583 ATTTTATCTA-ATAAATAATTTA
1 ATTTTAT-TATATAAATAATTAA
* *
8358605 ATTTAATTATATAATTAATTAA
1 ATTTTATTATATAAATAATTAA
*
8358627 ATATTTATAATA-AAATA
1 AT-TTTATTATATAAATA
8358644 TCGAAATATA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
21 2 0.06
22 22 0.71
23 7 0.23
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTTTATTATATAAATAATTAA
Found at i:8369324 original size:2 final size:2
Alignment explanation
Indices: 8369299--8369357 Score: 73
Period size: 2 Copynumber: 29.5 Consensus size: 2
8369289 ATTGTAAGGC
* * * *
8369299 CT CT CT CC CT CT CC CT CT CC CT CT CT CT CT CT CT CT CT CT AT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
8369341 CT AT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT C
8369358 CCCCCCCCTG
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.03, C:0.53, G:0.00, T:0.44
Consensus pattern (2 bp):
CT
Done.