Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 29 of 187
Found at i:8377607 original size:75 final size:72
Alignment explanation
Indices: 8377482--8377627 Score: 220
Period size: 75 Copynumber: 2.0 Consensus size: 72
8377472 ACCAGGTTGA
* * *
8377482 GAACTATCATCACTTTTAGAGCAGGAAGAAGCAGTATCTGTGACTTGCATGTCTGACAAAAGGGC
1 GAACCATCATCACTTTTAGAGCAGGAAGAAGCAGTACCTGTGACTTGCATGTCAGACAAAAGGGC
8377547 TTCAAGG
66 TTCAAGG
* *
8377554 GAACCATCATCACTTTTCTTAGAGCAGGAAGCAGCAGTACCTGTTACTTGCATGTCAGACAAAAG
1 GAACCATCATCAC--TT-TTAGAGCAGGAAGAAGCAGTACCTGTGACTTGCATGTCAGACAAAAG
8377619 GGCTTCAAG
63 GGCTTCAAG
8377628 AGGCGACTTG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
72 12 0.18
74 2 0.03
75 52 0.79
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (72 bp):
GAACCATCATCACTTTTAGAGCAGGAAGAAGCAGTACCTGTGACTTGCATGTCAGACAAAAGGGC
TTCAAGG
Found at i:8378433 original size:54 final size:54
Alignment explanation
Indices: 8378324--8378433 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 54
8378314 TATCCTTAGA
* * * *
8378324 AGAACCAGTTTCTGAAGCAACATGATCTTCCTCATCATCAGCATTGGACAGATC
1 AGAACCAGTTTCTGAAGCAACATCATCATCCTCATCATCAGCATTGGAAAAATC
* **
8378378 AGAACCGGTTTCTGAAGCAATGTCATCATCCTCATCATCAGCATTGGAAAAATC
1 AGAACCAGTTTCTGAAGCAACATCATCATCCTCATCATCAGCATTGGAAAAATC
8378432 AG
1 AG
8378434 GGGCAGTGAC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (54 bp):
AGAACCAGTTTCTGAAGCAACATCATCATCCTCATCATCAGCATTGGAAAAATC
Found at i:8396683 original size:22 final size:22
Alignment explanation
Indices: 8396652--8396693 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8396642 ATTTAAAAGA
*
8396652 CATAATTATTCAACTAATATCT
1 CATAACTATTCAACTAATATCT
*
8396674 CATAACTATTCAAGTAATAT
1 CATAACTATTCAACTAATAT
8396694 TGCTTGTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.38
Consensus pattern (22 bp):
CATAACTATTCAACTAATATCT
Found at i:8399827 original size:58 final size:58
Alignment explanation
Indices: 8399737--8399851 Score: 194
Period size: 58 Copynumber: 2.0 Consensus size: 58
8399727 TCTAATCAGT
* *
8399737 GACAAGTGATAAGTAGTAGCTTTAGCTACACTTATCCGATTAGTGACAAGTGACAAGC
1 GACAAGTGATAAGTAGTAGCTTTAGCTACACTTATCCAATCAGTGACAAGTGACAAGC
* *
8399795 GACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTAATCAGTGACAAGTGACAAG
1 GACAAGTGATAAGTAGTAGCTTTAGCTACACTTATCCAATCAGTGACAAGTGACAAG
8399852 TGATAAATGT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26
Consensus pattern (58 bp):
GACAAGTGATAAGTAGTAGCTTTAGCTACACTTATCCAATCAGTGACAAGTGACAAGC
Found at i:8399983 original size:26 final size:26
Alignment explanation
Indices: 8399954--8400005 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
8399944 AGTGGAAGTG
* *
8399954 AAGTACTCAATTTTTCGTAACCGTTC
1 AAGTACTAAATTTTCCGTAACCGTTC
8399980 AAGTACTAAATTTTCCGTAACCGTTC
1 AAGTACTAAATTTTCCGTAACCGTTC
8400006 CCTAATTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.37
Consensus pattern (26 bp):
AAGTACTAAATTTTCCGTAACCGTTC
Found at i:8402033 original size:21 final size:22
Alignment explanation
Indices: 8401991--8402035 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
8401981 AATTTTTCCA
*
8401991 AATATGAGTATTGGATTGAATTG
1 AATATGAG-ATTGGATTAAATTG
*
8402014 AATATGA-ATTGTATTAAATTG
1 AATATGAGATTGGATTAAATTG
8402035 A
1 A
8402036 GTTAAATTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
23 7 0.35
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (22 bp):
AATATGAGATTGGATTAAATTG
Found at i:8402479 original size:50 final size:51
Alignment explanation
Indices: 8402425--8402523 Score: 130
Period size: 50 Copynumber: 2.0 Consensus size: 51
8402415 TCGATTAATG
* * *
8402425 GCTCACTTGAGCTTCCCGA-TATTTAGCTCGCAAGAGCTTCCC-TTTATACA
1 GCTCACATGAGCTTCCC-ATTATATAGCTAGCAAGAGCTTCCCGTTTATACA
* *
8402475 GCTCACATGAGCTTCCCATTATATGGCTAGGAAGAGCTTCCCGTTTATA
1 GCTCACATGAGCTTCCCATTATATAGCTAGCAAGAGCTTCCCGTTTATA
8402524 TGCTTGTATA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
49 1 0.02
50 35 0.83
51 6 0.14
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.31
Consensus pattern (51 bp):
GCTCACATGAGCTTCCCATTATATAGCTAGCAAGAGCTTCCCGTTTATACA
Found at i:8402496 original size:25 final size:25
Alignment explanation
Indices: 8402425--8402497 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
8402415 TCGATTAATG
* **
8402425 GCTCACTTGAGCTTCCCGA-TATTTA
1 GCTCACATGAGCTTCCC-ATTATACA
* * *
8402450 GCTCGCAAGAGCTTCCCTTTATACA
1 GCTCACATGAGCTTCCCATTATACA
8402475 GCTCACATGAGCTTCCCATTATA
1 GCTCACATGAGCTTCCCATTATA
8402498 TGGCTAGGAA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.23, C:0.30, G:0.15, T:0.32
Consensus pattern (25 bp):
GCTCACATGAGCTTCCCATTATACA
Found at i:8405263 original size:62 final size:61
Alignment explanation
Indices: 8405181--8405394 Score: 211
Period size: 68 Copynumber: 3.4 Consensus size: 61
8405171 TATTTATCTT
* *
8405181 GATAAATATTAAATTAAATTTAGTATTAAATCTTATTAAAATAATAAAATATTTATCTACAA
1 GATAAACATTAAATTAAATTTAATATTAAATCTTATTAAAATAATAAAATATTTAT-TACAA
* *
8405243 GATAAACATTAAATTAAATTTAATATTAAGATAATCGCTTTAATATTAAATTAATAAAATA-CTA
1 GATAAACATTAAATTAAATTTAATATT---A-AAT--C--T--TATTAAAATAATAAAATATTTA
8405307 TT--AA
56 TTACAA
* ** *
8405311 GATTAGTATTAAATTAAATTTAATATTAAATCTTATTAAAATAAT-AAATGTTTATTTACAA
1 GATAAACATTAAATTAAATTTAATATTAAATCTTATTAAAATAATAAAATATTTA-TTACAA
*
8405372 GATAAACATTAAATTTAATTTAA
1 GATAAACATTAAATTAAATTTAA
8405395 GCGCTGCAAA
Statistics
Matches: 124, Mismatches: 14, Indels: 29
0.74 0.08 0.17
Matches are distributed among these distances:
57 4 0.03
58 13 0.10
59 2 0.02
60 1 0.01
61 21 0.17
62 26 0.21
64 3 0.02
65 2 0.02
66 3 0.02
68 27 0.22
70 2 0.02
71 3 0.02
72 17 0.14
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.41
Consensus pattern (61 bp):
GATAAACATTAAATTAAATTTAATATTAAATCTTATTAAAATAATAAAATATTTATTACAA
Found at i:8405531 original size:44 final size:43
Alignment explanation
Indices: 8405483--8405578 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 43
8405473 AGCATGTTGT
*
8405483 GGCGTTTGTAGCTAAAAGCACCGCAAAAGATCATGTTCTTTAGC
1 GGCGTTTGTAG-TAAAAGCACCGCAAAAGATCATGTTCTATAGC
* * ** *
8405527 GGCGTTTATAGTAAAAGCGCCGTTAAAGATTATGTTCTATAGC
1 GGCGTTTGTAGTAAAAGCACCGCAAAAGATCATGTTCTATAGC
*
8405570 GGCATTTGT
1 GGCGTTTGT
8405579 GGGAAAACGC
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 34 0.77
44 10 0.23
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
GGCGTTTGTAGTAAAAGCACCGCAAAAGATCATGTTCTATAGC
Found at i:8407945 original size:17 final size:17
Alignment explanation
Indices: 8407923--8407957 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
8407913 CGAATACTTC
8407923 TTTTATAAGGATCCAAT
1 TTTTATAAGGATCCAAT
8407940 TTTTATAAGGATCCAAT
1 TTTTATAAGGATCCAAT
8407957 T
1 T
8407958 CACTGTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (17 bp):
TTTTATAAGGATCCAAT
Found at i:8408964 original size:14 final size:14
Alignment explanation
Indices: 8408945--8408972 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8408935 AAGTACCATC
8408945 AAGCATAACTAATT
1 AAGCATAACTAATT
8408959 AAGCATAACTAATT
1 AAGCATAACTAATT
8408973 TAAATTACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
AAGCATAACTAATT
Found at i:8410352 original size:24 final size:24
Alignment explanation
Indices: 8410325--8410376 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
8410315 GTAGGAAAGA
*
8410325 AAAAATTAAGTTAGGGAATTGGGG
1 AAAAACTAAGTTAGGGAATTGGGG
*
8410349 AAAAACTAAGTTAGGGATTTGGGG
1 AAAAACTAAGTTAGGGAATTGGGG
8410373 AAAA
1 AAAA
8410377 TGATTTGGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.02, G:0.31, T:0.23
Consensus pattern (24 bp):
AAAAACTAAGTTAGGGAATTGGGG
Found at i:8417445 original size:20 final size:19
Alignment explanation
Indices: 8417420--8417532 Score: 72
Period size: 20 Copynumber: 5.8 Consensus size: 19
8417410 AGAGAGTGCC
8417420 AAAAATTATGAGTGAATACA
1 AAAAATTATGAG-GAATACA
* *
8417440 AAAAA-TA-GA-GATTACC
1 AAAAATTATGAGGAATACA
8417456 AAAAATTATGAGGGAATACTA
1 AAAAATTATGA-GGAATAC-A
*
8417477 AAAAAATATGAGGAAGTATCA
1 AAAAATTATGAGGAA-TA-CA
* *
8417498 TAAAAA-TACGAGGGAATATA
1 -AAAAATTATGA-GGAATACA
* *
8417518 AAAAGTTACGAGGAA
1 AAAAATTATGAGGAA
8417533 GTATCACAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
16 10 0.13
17 2 0.03
18 4 0.05
19 10 0.13
20 20 0.27
21 19 0.25
22 10 0.13
ACGTcount: A:0.55, C:0.06, G:0.19, T:0.20
Consensus pattern (19 bp):
AAAAATTATGAGGAATACA
Found at i:8417450 original size:36 final size:37
Alignment explanation
Indices: 8417409--8417521 Score: 113
Period size: 36 Copynumber: 3.0 Consensus size: 37
8417399 AAAAATATAT
* *
8417409 TAGAGAGTGCCAAAAATTATGAGTGAATAC-AAAAAA
1 TAGAGAGTACCAAAAATTATGAGGGAATACTAAAAAA
*
8417445 TAGAGATTACCAAAAATTATGAGGGAATACTAAAAAAA
1 TAGAGAGTACCAAAAATTATGAGGGAATACT-AAAAAA
* * *
8417483 TATGAGGAAGTATCATAAAAATACGAGGGAATA-TAAAAA
1 TA-GA-G-AGTACCA-AAAATTATGAGGGAATACTAAAAA
8417522 GTTACGAGGA
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
36 27 0.42
38 8 0.12
39 2 0.03
40 6 0.09
41 6 0.09
42 15 0.23
ACGTcount: A:0.54, C:0.07, G:0.19, T:0.20
Consensus pattern (37 bp):
TAGAGAGTACCAAAAATTATGAGGGAATACTAAAAAA
Found at i:8417489 original size:21 final size:20
Alignment explanation
Indices: 8417456--8417521 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 20
8417446 AGAGATTACC
*
8417456 AAAAATTATGAGGGAATACTA
1 AAAAAATATGAGGGAATA-TA
8417477 AAAAAATATGA-GGAAGTATCA
1 AAAAAATATGAGGGAA-TAT-A
* *
8417498 TAAAAATACGAGGGAATATA
1 AAAAAATATGAGGGAATATA
8417518 AAAA
1 AAAA
8417522 GTTACGAGGA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 9 0.24
21 25 0.66
22 4 0.11
ACGTcount: A:0.58, C:0.05, G:0.18, T:0.20
Consensus pattern (20 bp):
AAAAAATATGAGGGAATATA
Found at i:8417531 original size:41 final size:43
Alignment explanation
Indices: 8417455--8417544 Score: 121
Period size: 41 Copynumber: 2.1 Consensus size: 43
8417445 TAGAGATTAC
* *
8417455 CAAAAATTATGAGGGAATACTAAAAAAATATGAGGAAGTATCA
1 CAAAAATTACGAGGGAATACTAAAAAAATACGAGGAAGTATCA
* **
8417498 TAAAAA-TACGAGGGAATA-TAAAAAGTTACGAGGAAGTATCA
1 CAAAAATTACGAGGGAATACTAAAAAAATACGAGGAAGTATCA
8417539 CAAAAA
1 CAAAAA
8417545 AACACAAGGA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 25 0.61
42 11 0.27
43 5 0.12
ACGTcount: A:0.54, C:0.08, G:0.19, T:0.19
Consensus pattern (43 bp):
CAAAAATTACGAGGGAATACTAAAAAAATACGAGGAAGTATCA
Found at i:8417633 original size:20 final size:22
Alignment explanation
Indices: 8417584--8417640 Score: 59
Period size: 20 Copynumber: 2.8 Consensus size: 22
8417574 ATTAAGAGGT
*
8417584 AATACAAAAAAATATAATAATG
1 AATACAAAAAATTATAATAATG
*
8417606 --TACCAAAAATTATAA-AA-G
1 AATACAAAAAATTATAATAATG
*
8417624 AATACAAAAACTTATAA
1 AATACAAAAAATTATAA
8417641 GTATAAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
18 1 0.03
19 2 0.07
20 26 0.90
ACGTcount: A:0.65, C:0.09, G:0.04, T:0.23
Consensus pattern (22 bp):
AATACAAAAAATTATAATAATG
Found at i:8421319 original size:50 final size:50
Alignment explanation
Indices: 8421261--8421403 Score: 187
Period size: 50 Copynumber: 2.9 Consensus size: 50
8421251 CATTTGGGTA
* *
8421261 AAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* * * *
8421311 AAGAGGTCCCCTGTAAGACCATGTCTGAGACATGGCATGGGCACCGATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * *
8421361 GAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
8421404 GTACAGGAAA
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 79 1.00
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:8424160 original size:7 final size:6
Alignment explanation
Indices: 8424139--8424172 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
8424129 ATCAAAGTTG
* *
8424139 AAAATA AAAAGA AAAAGA AAAAGA AAAAGG AAAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAA
8424173 CCCCAGAGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (6 bp):
AAAAGA
Found at i:8426165 original size:13 final size:13
Alignment explanation
Indices: 8426147--8426174 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8426137 ATTGGTATAG
8426147 TTTTTATCATAAC
1 TTTTTATCATAAC
8426160 TTTTTATCATAAC
1 TTTTTATCATAAC
8426173 TT
1 TT
8426175 ATTTGTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (13 bp):
TTTTTATCATAAC
Found at i:8426416 original size:34 final size:34
Alignment explanation
Indices: 8426368--8426438 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
8426358 CATAACTCAT
*
8426368 ATTCGTTTATATCTATTATTGAAAGTGTTATTTA
1 ATTCATTTATATCTATTATTGAAAGTGTTATTTA
8426402 ATTCATTTATATCTATTATTGAAAGTGTTATTTA
1 ATTCATTTATATCTATTATTGAAAGTGTTATTTA
8426436 ATT
1 ATT
8426439 AATATTCGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.54
Consensus pattern (34 bp):
ATTCATTTATATCTATTATTGAAAGTGTTATTTA
Found at i:8429281 original size:13 final size:13
Alignment explanation
Indices: 8429263--8429308 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
8429253 TTATGCAGTG
8429263 ACTGATTTGACCA
1 ACTGATTTGACCA
**
8429276 ACTGATTCT-ATTA
1 ACTGATT-TGACCA
8429289 ACTGATTTGACCA
1 ACTGATTTGACCA
8429302 ACTGATT
1 ACTGATT
8429309 CCATTAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
12 1 0.04
13 25 0.93
14 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (13 bp):
ACTGATTTGACCA
Found at i:8429292 original size:26 final size:26
Alignment explanation
Indices: 8429263--8429315 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
8429253 TTATGCAGTG
*
8429263 ACTGATTTGACCAACTGATTCTATTA
1 ACTGATTTGACCAACTGATTCCATTA
8429289 ACTGATTTGACCAACTGATTCCATTA
1 ACTGATTTGACCAACTGATTCCATTA
8429315 A
1 A
8429316 ATATTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (26 bp):
ACTGATTTGACCAACTGATTCCATTA
Found at i:8429914 original size:17 final size:17
Alignment explanation
Indices: 8429892--8429928 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
8429882 TATAAACTTG
8429892 AAAAATAGATTTGGACA
1 AAAAATAGATTTGGACA
*
8429909 AAAAATAGATTTGGGCA
1 AAAAATAGATTTGGACA
8429926 AAA
1 AAA
8429929 TATAAATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.54, C:0.05, G:0.19, T:0.22
Consensus pattern (17 bp):
AAAAATAGATTTGGACA
Found at i:8431810 original size:18 final size:19
Alignment explanation
Indices: 8431764--8431810 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
8431754 TATCTTGTAA
*
8431764 TTGTTGGATATTGACTTGT
1 TTGTTGCATATTGACTTGT
*
8431783 TTGTTGCATATTTACTTGT
1 TTGTTGCATATTGACTTGT
8431802 TTG-TGCATA
1 TTGTTGCATA
8431811 GTATGAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.17, C:0.09, G:0.21, T:0.53
Consensus pattern (19 bp):
TTGTTGCATATTGACTTGT
Found at i:8434265 original size:3 final size:3
Alignment explanation
Indices: 8434257--8434296 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
8434247 TTGTTGCCCC
8434257 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8434297 GTCATTATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8440829 original size:84 final size:84
Alignment explanation
Indices: 8440692--8440857 Score: 233
Period size: 84 Copynumber: 2.0 Consensus size: 84
8440682 GGTTAATGAA
** * * *
8440692 GAGGTGGTGAATAAAAGAGAAAATGATGTGAAGGATGATGGTGAGTTGCAAGATTGTAGACAGAC
1 GAGGTGGTGAATAAAAGAGAAAATGATGTGAAGGACAATGATGAGTTGCAAGATGGTAGACAGAA
8440757 TCTAAATGGTGGAACTAAT
66 TCTAAATGGTGGAACTAAT
* ** *
8440776 GAGGTGGTGAATAGAAGAGAAGGTGATGTGAAGGACAATGATGAGTTGCAAGATGGTGGACAGAA
1 GAGGTGGTGAATAAAAGAGAAAATGATGTGAAGGACAATGATGAGTTGCAAGATGGTAGACAGAA
* *
8440841 TTTAAGTGGTGGAACTA
66 TCTAAATGGTGGAACTA
8440858 GTGGTAGTGG
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
84 71 1.00
ACGTcount: A:0.37, C:0.05, G:0.35, T:0.23
Consensus pattern (84 bp):
GAGGTGGTGAATAAAAGAGAAAATGATGTGAAGGACAATGATGAGTTGCAAGATGGTAGACAGAA
TCTAAATGGTGGAACTAAT
Found at i:8448812 original size:23 final size:23
Alignment explanation
Indices: 8448786--8448835 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
8448776 AACCAAAGGC
8448786 TCAAATGATACATATAAAGCCAT
1 TCAAATGATACATATAAAGCCAT
8448809 TCAAATGATACATATAAAGCCAT
1 TCAAATGATACATATAAAGCCAT
8448832 TCAA
1 TCAA
8448836 TCCTGCACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.48, C:0.18, G:0.08, T:0.26
Consensus pattern (23 bp):
TCAAATGATACATATAAAGCCAT
Found at i:8449980 original size:20 final size:23
Alignment explanation
Indices: 8449929--8449987 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 23
8449919 ATCAATCATA
*
8449929 ATCAAATATCAATTCATTAAATAT
1 ATCAAATTTCAATTCATT-AATAT
8449953 ATCAAATTTCAATTCATT-ATAT
1 ATCAAATTTCAATTCATTAATAT
*
8449975 -TCAATTTATCAAT
1 ATCAAATT-TCAAT
8449988 CAATTTATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 6 0.19
22 9 0.28
24 17 0.53
ACGTcount: A:0.44, C:0.14, G:0.00, T:0.42
Consensus pattern (23 bp):
ATCAAATTTCAATTCATTAATAT
Found at i:8453702 original size:25 final size:25
Alignment explanation
Indices: 8453674--8453721 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
8453664 CAACTCTTAT
*
8453674 GAGCGTCCCG-TTATATGGCTCTTCG
1 GAGCGTCCCGATTA-AAGGCTCTTCG
*
8453699 GAGCTTCCCGATTAAAGGCTCTT
1 GAGCGTCCCGATTAAAGGCTCTT
8453722 TGTGAGCTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 17 0.85
26 3 0.15
ACGTcount: A:0.17, C:0.27, G:0.25, T:0.31
Consensus pattern (25 bp):
GAGCGTCCCGATTAAAGGCTCTTCG
Found at i:8453757 original size:25 final size:25
Alignment explanation
Indices: 8453690--8453758 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 25
8453680 CCCGTTATAT
*
8453690 GGCTCT-TCGGAGCTTCCCGATTAAA
1 GGCTCTCT-GGAGCTTCCCGAGTAAA
* * *
8453715 GGCTCTTTGTGAGCTTCCTGAGTAAT
1 GGCTCTCTG-GAGCTTCCCGAGTAAA
*
8453741 GGTTCTCTGGAGCTTCCC
1 GGCTCTCTGGAGCTTCCC
8453759 AATATGGCTC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
25 15 0.42
26 21 0.58
ACGTcount: A:0.14, C:0.26, G:0.26, T:0.33
Consensus pattern (25 bp):
GGCTCTCTGGAGCTTCCCGAGTAAA
Found at i:8453829 original size:49 final size:49
Alignment explanation
Indices: 8453726--8453829 Score: 108
Period size: 48 Copynumber: 2.1 Consensus size: 49
8453716 GCTCTTTGTG
* * * *
8453726 AGCTTCCTGAGTAATGGTTCTCTGGAGCTTCCCAATATGGCTCGTTTGA
1 AGCTTCCAGAGTAATGGTTATCCGGAGCTTCCCAATATGGCTCGTATGA
*
8453775 A-CTTCCAGA-TATATGGTTATCCGGAGCTTCCTGAATATGGCTC-TGAT-A
1 AGCTTCCAGAGTA-ATGGTTATCCGGAGCTTCC-CAATATGGCTCGT-ATGA
8453823 AGCTTCC
1 AGCTTCC
8453830 TGTTATATAG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
47 2 0.04
48 27 0.59
49 17 0.37
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (49 bp):
AGCTTCCAGAGTAATGGTTATCCGGAGCTTCCCAATATGGCTCGTATGA
Found at i:8453847 original size:25 final size:25
Alignment explanation
Indices: 8453799--8453892 Score: 84
Period size: 25 Copynumber: 3.8 Consensus size: 25
8453789 GGTTATCCGG
* * *
8453799 AGCTTCCTG-AATATGGCTCTGATA
1 AGCTTCCTGTTATATAGCTCAGATA
*
8453823 AGCTTCCTGTTATATAG-TCCGGATA
1 AGCTTCCTGTTATATAGCT-CAGATA
** * *
8453848 AGCTTCCCATTATATAGCTCATATG
1 AGCTTCCTGTTATATAGCTCAGATA
*
8453873 AGCTTCCTGTTATATGGCTC
1 AGCTTCCTGTTATATAGCTC
8453893 GAGGGAGAGC
Statistics
Matches: 56, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
24 10 0.18
25 45 0.80
26 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.36
Consensus pattern (25 bp):
AGCTTCCTGTTATATAGCTCAGATA
Found at i:8465799 original size:363 final size:363
Alignment explanation
Indices: 8465134--8465863 Score: 1316
Period size: 363 Copynumber: 2.0 Consensus size: 363
8465124 TTATCAGAGA
* *
8465134 TATTCAGAATAAGAAACCTTGTTTTCAAGAGATTATCTTTCAACATATTCATAGATCAGGGAACT
1 TATTCAGAATAAGAAACCTTGTTTTCAAGAGATTATATTTCAACATATTCACAGATCAGGGAACT
* *
8465199 CACATGCACATAGACTAGCAAAAGACGCTCTTGATAGATGAGAAACCTTTTACCTGATGGGAGAA
66 CACATGCACATAGACTAGCAAAAGACGCTCTTGATAAAGGAGAAACCTTTTACCTGATGGGAGAA
* **
8465264 GAGCTGAAGCATCATAGTTTCGCTTCAGAGAGAAGATGGCCAAGAAATCTAGACTGAAGGAGTGT
131 GAGCTGAAGCATCATAGTTTCGCTTCAGAGAGAAGATGGCCAAGAAATCCAGACTGAAGGAGCAT
8465329 TTGAGGGAAATGATTTCAAAAGAAGATAGCAAATAAAGTTTTATCCTTGGAAACTACTATCGTCA
196 TTGAGGGAAATGATTTCAAAAGAAGATAGCAAATAAAGTTTTATCCTTGGAAACTACTATCGTCA
* *
8465394 GAACGAATTGGATTTTGAAATGACAAATCGAGAGAATTAATGGTATCCAGCCATTTTTGAATTAA
261 GAACGAATTGGATTTTGAAATGACAAATCGAGAGAATTAATGGAATCCAACCATTTTTGAATTAA
*
8465459 CTGGGGTAGATATTTAGGTTCCTTTTCTTCCTTTCATT
326 CTGGGGTAGATATTTAGGTTCCTTTTCTTACTTTCATT
*
8465497 TATTCAGAATAAGAAACCTTGTTTTCAAGAGATTATATTTCAGCATATTCACAGATCAGGGAACT
1 TATTCAGAATAAGAAACCTTGTTTTCAAGAGATTATATTTCAACATATTCACAGATCAGGGAACT
*
8465562 TACATGCACATAGACTAGCAAAAGACGCTCTTGATAAAGGAGAAACCTTTTACCTGATGGGAGAA
66 CACATGCACATAGACTAGCAAAAGACGCTCTTGATAAAGGAGAAACCTTTTACCTGATGGGAGAA
8465627 GAGCTGAAGCATCATAGTTTCGCTTCAGAGAGAAGATGGCCAAGAAATCCAGACTGAAGGAGCAT
131 GAGCTGAAGCATCATAGTTTCGCTTCAGAGAGAAGATGGCCAAGAAATCCAGACTGAAGGAGCAT
8465692 TTGAGGGAAATGATTTCAAAAGAAGATAGCAAATAAAGTTTTATCCTTGGAAACTACTATCGTCA
196 TTGAGGGAAATGATTTCAAAAGAAGATAGCAAATAAAGTTTTATCCTTGGAAACTACTATCGTCA
* * *
8465757 GAACGAATTTGATTTTGAAATGACAAATTGAGAGAATTAATGGAATCCAACCGTTTTTGAATTAA
261 GAACGAATTGGATTTTGAAATGACAAATCGAGAGAATTAATGGAATCCAACCATTTTTGAATTAA
*
8465822 CTGGGGTAGATATTTAGGTTCCTTTTCTTATTTTCATT
326 CTGGGGTAGATATTTAGGTTCCTTTTCTTACTTTCATT
8465860 TATT
1 TATT
8465864 ACTTTCTGTT
Statistics
Matches: 351, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
363 351 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (363 bp):
TATTCAGAATAAGAAACCTTGTTTTCAAGAGATTATATTTCAACATATTCACAGATCAGGGAACT
CACATGCACATAGACTAGCAAAAGACGCTCTTGATAAAGGAGAAACCTTTTACCTGATGGGAGAA
GAGCTGAAGCATCATAGTTTCGCTTCAGAGAGAAGATGGCCAAGAAATCCAGACTGAAGGAGCAT
TTGAGGGAAATGATTTCAAAAGAAGATAGCAAATAAAGTTTTATCCTTGGAAACTACTATCGTCA
GAACGAATTGGATTTTGAAATGACAAATCGAGAGAATTAATGGAATCCAACCATTTTTGAATTAA
CTGGGGTAGATATTTAGGTTCCTTTTCTTACTTTCATT
Found at i:8468350 original size:23 final size:23
Alignment explanation
Indices: 8468318--8468378 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
8468308 ATAAGTGCCA
*
8468318 CACTGATATGTAGTCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
8468341 CACTGTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
8468364 CACTGAAATGTAGCC
1 CACTGATATGTAGCC
8468379 TAATTCACAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:8472252 original size:18 final size:18
Alignment explanation
Indices: 8472229--8472264 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8472219 TTATTAATAT
*
8472229 TTATTGTTGAAAATAAGA
1 TTATTGTTAAAAATAAGA
8472247 TTATTGTTAAAAATAAGA
1 TTATTGTTAAAAATAAGA
8472265 AATTAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (18 bp):
TTATTGTTAAAAATAAGA
Found at i:8472455 original size:21 final size:21
Alignment explanation
Indices: 8472418--8472508 Score: 69
Period size: 21 Copynumber: 4.3 Consensus size: 21
8472408 TCTCACGAGC
* *
8472418 TTCTGTT-AACTCATATGAGT
1 TTCTGTTCAACCCTTATGAGT
* *
8472438 TTCTGTTTAACCCTTATGGGT
1 TTCTGTTCAACCCTTATGAGT
* * *
8472459 TTTTGTTCAGCTCC-TATGAGC
1 TTCTGTTCAAC-CCTTATGAGT
* *
8472480 TTCCGTTCAACCCTTTATGGGT
1 TTCTGTTCAACCC-TTATGAGT
8472502 TTCTGTT
1 TTCTGTT
8472509 AGCACTTATG
Statistics
Matches: 53, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
20 9 0.17
21 31 0.58
22 13 0.25
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (21 bp):
TTCTGTTCAACCCTTATGAGT
Found at i:8479462 original size:24 final size:25
Alignment explanation
Indices: 8479407--8479471 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
8479397 TCGTTCTGTG
*
8479407 GCAAATGATGAATTGACAATAAAAT
1 GCAAAGGATGAATTGACAATAAAAT
* * *
8479432 GCAAAGGTTGAATTGACGAT-ATAT
1 GCAAAGGATGAATTGACAATAAAAT
8479456 GCAAAGGATGAATTGA
1 GCAAAGGATGAATTGA
8479472 TGGAAAATGT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
24 18 0.51
25 17 0.49
ACGTcount: A:0.45, C:0.08, G:0.23, T:0.25
Consensus pattern (25 bp):
GCAAAGGATGAATTGACAATAAAAT
Found at i:8484361 original size:35 final size:36
Alignment explanation
Indices: 8484296--8484364 Score: 88
Period size: 35 Copynumber: 1.9 Consensus size: 36
8484286 ATGAAAATGA
8484296 CAAACAAAGGTTCCAAAAAGAAAAACGTTCTTCATT
1 CAAACAAAGGTTCCAAAAAGAAAAACGTTCTTCATT
* **
8484332 CAAAC-AAGGTTTCAATAAA-AAAATGGTTCTTCA
1 CAAACAAAGGTTCCAA-AAAGAAAAACGTTCTTCA
8484365 AACTTACCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
35 21 0.72
36 8 0.28
ACGTcount: A:0.46, C:0.17, G:0.12, T:0.25
Consensus pattern (36 bp):
CAAACAAAGGTTCCAAAAAGAAAAACGTTCTTCATT
Found at i:8484491 original size:29 final size:30
Alignment explanation
Indices: 8484431--8484505 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
8484421 AGGGTTGGTG
* * *
8484431 ATTTTTTTTGAA-GCAAAGAGAGTTGTTGAA
1 ATTTTTATTGAATG-AAGGAGAGTTGCTGAA
*
8484461 ATTTTTATTGACTGAAGGAGAGTTGCT-AA
1 ATTTTTATTGAATGAAGGAGAGTTGCTGAA
*
8484490 ATTTTTTTTGAATGAA
1 ATTTTTATTGAATGAA
8484506 ATAGGTATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 16 0.42
30 21 0.55
31 1 0.03
ACGTcount: A:0.32, C:0.04, G:0.21, T:0.43
Consensus pattern (30 bp):
ATTTTTATTGAATGAAGGAGAGTTGCTGAA
Found at i:8487961 original size:27 final size:27
Alignment explanation
Indices: 8487874--8487954 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
8487864 CCTTTGTCTT
* *
8487874 AACAGACTTACCTGTGTTTACTGCCCC
1 AACAGACTTACCCGTGTTTACTGTCCC
* * *
8487901 AACGGACTTACTCGTGTTTACTAT-CC
1 AACAGACTTACCCGTGTTTACTGTCCC
8487927 AAGCAGACTTACCCGTGTTTACTGTCCC
1 AA-CAGACTTACCCGTGTTTACTGTCCC
8487955 GAAAGACCTT
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
26 4 0.09
27 38 0.86
28 2 0.05
ACGTcount: A:0.22, C:0.31, G:0.16, T:0.31
Consensus pattern (27 bp):
AACAGACTTACCCGTGTTTACTGTCCC
Found at i:8489326 original size:29 final size:29
Alignment explanation
Indices: 8489268--8489331 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
8489258 AGTTACTAAT
* * * *
8489268 TTTTTTTGAATGAAATAGGGTTCGTCAAA
1 TTTTTTTGAACGAAATAGAGTTCATAAAA
8489297 TTATTTTT-AACGAAATAGAGTTCATAAAA
1 TT-TTTTTGAACGAAATAGAGTTCATAAAA
8489326 TTTTTT
1 TTTTTT
8489332 AGGGATATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 4 0.13
29 21 0.70
30 5 0.17
ACGTcount: A:0.34, C:0.06, G:0.14, T:0.45
Consensus pattern (29 bp):
TTTTTTTGAACGAAATAGAGTTCATAAAA
Found at i:8496032 original size:26 final size:27
Alignment explanation
Indices: 8496002--8496063 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
8495992 TGTCCCCATA
8496002 TTTACTGTCCCGATC-GACTACCC-GTG
1 TTTACTGTCCCGA-CAGACTACCCAGTG
* *
8496028 TTTACTATCTCGACAGACTACCCAGTG
1 TTTACTGTCCCGACAGACTACCCAGTG
8496055 TTTACTGTC
1 TTTACTGTC
8496064 TTGGTGGACC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.03
26 19 0.61
27 11 0.35
ACGTcount: A:0.19, C:0.31, G:0.16, T:0.34
Consensus pattern (27 bp):
TTTACTGTCCCGACAGACTACCCAGTG
Found at i:8499383 original size:37 final size:37
Alignment explanation
Indices: 8499317--8499390 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
8499307 AGAAAATGAA
*
8499317 TAAAATTATAAAAACATAAAAAGATATATATGTATAT
1 TAAAATTATAAAAACATAAAAAGATATATAAGTATAT
** *
8499354 TAAAATTAT-AAAGTATAAAAAATATATATAAGTATAT
1 TAAAATTATAAAAACAT-AAAAAGATATATAAGTATAT
8499391 ATTAATATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 5 0.16
37 27 0.84
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.34
Consensus pattern (37 bp):
TAAAATTATAAAAACATAAAAAGATATATAAGTATAT
Found at i:8499689 original size:15 final size:16
Alignment explanation
Indices: 8499665--8499697 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8499655 TTTAACATAG
8499665 ATAATAATATATA-AA
1 ATAATAATATATATAA
*
8499680 ATAATCATATATATAA
1 ATAATAATATATATAA
8499696 AT
1 AT
8499698 TTAAACCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (16 bp):
ATAATAATATATATAA
Found at i:8504474 original size:32 final size:29
Alignment explanation
Indices: 8504421--8504505 Score: 89
Period size: 32 Copynumber: 2.8 Consensus size: 29
8504411 CAGCTACTCT
* * *
8504421 TGTTCACATCAATAGACCATTCAATTTTTAG
1 TGTTCACACCAA-AGACCATTCAA-TCTGAG
8504452 TGTTCACACCCAAAGGACCATTCGAATCTGAG
1 TGTTCACA-CCAAA-GACCATTC-AATCTGAG
*
8504484 TGTTCACACCAAAGACCCTTCA
1 TGTTCACACCAAAGACCATTCA
8504506 GATGCCACAA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
29 1 0.02
30 7 0.15
31 14 0.30
32 23 0.49
33 2 0.04
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (29 bp):
TGTTCACACCAAAGACCATTCAATCTGAG
Found at i:8504672 original size:35 final size:35
Alignment explanation
Indices: 8504633--8504699 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
8504623 AAGTCCAATT
* *
8504633 CAATGGCTGTTCGGGAACTCCAATTGTCAAAGCTC
1 CAATGACTGTTCGAGAACTCCAATTGTCAAAGCTC
8504668 CAATGACTGTTCGAGAACTCCAATTGTCAAAG
1 CAATGACTGTTCGAGAACTCCAATTGTCAAAG
8504700 TTGATTAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (35 bp):
CAATGACTGTTCGAGAACTCCAATTGTCAAAGCTC
Found at i:8514068 original size:23 final size:22
Alignment explanation
Indices: 8514042--8514085 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8514032 AATCCCTAGG
8514042 TCTTTCTTTCTCTTTCTCTTTTT
1 TCTTTCTTTC-CTTTCTCTTTTT
*
8514065 TCTTTCTTTCCTTTCTGTTTT
1 TCTTTCTTTCCTTTCTCTTTT
8514086 CGTTTGGCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.00, C:0.25, G:0.02, T:0.73
Consensus pattern (22 bp):
TCTTTCTTTCCTTTCTCTTTTT
Found at i:8516727 original size:11 final size:11
Alignment explanation
Indices: 8516711--8516745 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
8516701 TCCAAATTTT
*
8516711 GTTCTCTGTTG
1 GTTCTCTGCTG
8516722 GTTCTCTGCTG
1 GTTCTCTGCTG
*
8516733 GTTCTCTACTG
1 GTTCTCTGCTG
8516744 GT
1 GT
8516746 GCTGGTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.03, C:0.23, G:0.26, T:0.49
Consensus pattern (11 bp):
GTTCTCTGCTG
Found at i:8516801 original size:25 final size:25
Alignment explanation
Indices: 8516766--8516857 Score: 148
Period size: 25 Copynumber: 3.7 Consensus size: 25
8516756 CTCTGCTTGA
8516766 TGGTTCTTTGTTCCTCTGCTGGCGC
1 TGGTTCTTTGTTCCTCTGCTGGCGC
*
8516791 AGGTTCTTTGTTCCTCTGCTGGCGC
1 TGGTTCTTTGTTCCTCTGCTGGCGC
* * *
8516816 TGGTTCTTTGTTCCTCTGTTGGTGT
1 TGGTTCTTTGTTCCTCTGCTGGCGC
8516841 TGGTTCTTTGTTCCTCT
1 TGGTTCTTTGTTCCTCT
8516858 TCTCCACTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.01, C:0.24, G:0.26, T:0.49
Consensus pattern (25 bp):
TGGTTCTTTGTTCCTCTGCTGGCGC
Found at i:8519645 original size:18 final size:18
Alignment explanation
Indices: 8519622--8519669 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
8519612 AAAATATGAG
* *
8519622 AAATGATGTTCACATTTT
1 AAATGATGTTCACATCTC
8519640 AAATGATGTTCACATCTC
1 AAATGATGTTCACATCTC
8519658 AAATGATGTTCA
1 AAATGATGTTCA
8519670 AGTAGATGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (18 bp):
AAATGATGTTCACATCTC
Found at i:8520193 original size:72 final size:72
Alignment explanation
Indices: 8520098--8520264 Score: 232
Period size: 72 Copynumber: 2.3 Consensus size: 72
8520088 CAATGCTAAA
* *
8520098 CTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTATTTATGTTTGGTCTTTAGATATTGAATTTATGTTCTACTTATTTAT
8520163 GTGTAAT
66 GTGTAAT
* * *
8520170 CTAGTTTTATTAATATTTGTTTATGTTTGGTCTTTAGATATTGAATTTATGTTCTACTTATTT-T
1 CTAGTTTTATCAATAGTTATTTATGTTTGGTCTTTAGATATTGAATTTATGTTCTACTTATTTAT
*
8520234 -TACTAAAT
66 GT-GT-AAT
*
8520242 -TAGTTTTATCAATAGTTGTTTAT
1 CTAGTTTTATCAATAGTTATTTAT
8520265 ATATAATTTT
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
70 1 0.01
71 23 0.27
72 61 0.72
ACGTcount: A:0.25, C:0.06, G:0.13, T:0.56
Consensus pattern (72 bp):
CTAGTTTTATCAATAGTTATTTATGTTTGGTCTTTAGATATTGAATTTATGTTCTACTTATTTAT
GTGTAAT
Found at i:8523347 original size:21 final size:21
Alignment explanation
Indices: 8523318--8523360 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8523308 TTAGATATGG
*
8523318 TATGTAATCCAAGATATGATA
1 TATGCAATCCAAGATATGATA
**
8523339 TATGCAATCTTAGATATGATA
1 TATGCAATCCAAGATATGATA
8523360 T
1 T
8523361 GCAATCTTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (21 bp):
TATGCAATCCAAGATATGATA
Found at i:8523380 original size:22 final size:19
Alignment explanation
Indices: 8523298--8523371 Score: 85
Period size: 19 Copynumber: 3.8 Consensus size: 19
8523288 ATTTTTGAGA
*
8523298 ATATGCAACCTTAGATATG
1 ATATGCAATCTTAGATATG
* * **
8523317 GTATGTAATCCAAGATATG
1 ATATGCAATCTTAGATATG
8523336 ATATATGCAATCTTAGATATG
1 --ATATGCAATCTTAGATATG
8523357 ATATGCAATCTTAGA
1 ATATGCAATCTTAGA
8523372 ATATATGATT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
19 29 0.66
21 15 0.34
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (19 bp):
ATATGCAATCTTAGATATG
Found at i:8524801 original size:98 final size:98
Alignment explanation
Indices: 8524679--8524875 Score: 331
Period size: 98 Copynumber: 2.0 Consensus size: 98
8524669 TAAAAAATAA
* * *
8524679 TAAAGGAAATATTTCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
8524744 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* * *
8524777 TAAAGGGAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCGTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
8524842 TTAAATCTTGGATGAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
8524875 T
1 T
8524876 TTTATTGTAC
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.27, C:0.09, G:0.26, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:8529031 original size:230 final size:230
Alignment explanation
Indices: 8528628--8529088 Score: 922
Period size: 230 Copynumber: 2.0 Consensus size: 230
8528618 AAAATACGAT
8528628 CCTTTTAACTTGAATAAATTGAATAATAAAACACTATTATTTCAAAGAAATAAAAAGTCACACCC
1 CCTTTTAACTTGAATAAATTGAATAATAAAACACTATTATTTCAAAGAAATAAAAAGTCACACCC
8528693 GGTGAGTTAGGGCGCGACATTTTTAATCTTTAAAATTAAGTTTATCCTTTAACTTTTAAAACCCA
66 GGTGAGTTAGGGCGCGACATTTTTAATCTTTAAAATTAAGTTTATCCTTTAACTTTTAAAACCCA
8528758 TGCATTTGAAAAGGATATTTGATTATTCGGGTCAAATGAGGAAATCAAAACCCAATAAATTAGGG
131 TGCATTTGAAAAGGATATTTGATTATTCGGGTCAAATGAGGAAATCAAAACCCAATAAATTAGGG
8528823 CTCGATTTCACAAAATTCCTAAATATCAAATATTG
196 CTCGATTTCACAAAATTCCTAAATATCAAATATTG
8528858 CCTTTTAACTTGAATAAATTGAATAATAAAACACTATTATTTCAAAGAAATAAAAAGTCACACCC
1 CCTTTTAACTTGAATAAATTGAATAATAAAACACTATTATTTCAAAGAAATAAAAAGTCACACCC
8528923 GGTGAGTTAGGGCGCGACATTTTTAATCTTTAAAATTAAGTTTATCCTTTAACTTTTAAAACCCA
66 GGTGAGTTAGGGCGCGACATTTTTAATCTTTAAAATTAAGTTTATCCTTTAACTTTTAAAACCCA
8528988 TGCATTTGAAAAGGATATTTGATTATTCGGGTCAAATGAGGAAATCAAAACCCAATAAATTAGGG
131 TGCATTTGAAAAGGATATTTGATTATTCGGGTCAAATGAGGAAATCAAAACCCAATAAATTAGGG
8529053 CTCGATTTCACAAAATTCCTAAATATCAAATATTG
196 CTCGATTTCACAAAATTCCTAAATATCAAATATTG
8529088 C
1 C
8529089 TCCTAAATAT
Statistics
Matches: 231, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
230 231 1.00
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.32
Consensus pattern (230 bp):
CCTTTTAACTTGAATAAATTGAATAATAAAACACTATTATTTCAAAGAAATAAAAAGTCACACCC
GGTGAGTTAGGGCGCGACATTTTTAATCTTTAAAATTAAGTTTATCCTTTAACTTTTAAAACCCA
TGCATTTGAAAAGGATATTTGATTATTCGGGTCAAATGAGGAAATCAAAACCCAATAAATTAGGG
CTCGATTTCACAAAATTCCTAAATATCAAATATTG
Found at i:8529094 original size:20 final size:20
Alignment explanation
Indices: 8529069--8529108 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
8529059 TTCACAAAAT
8529069 TCCTAAATATCAAATATTGC
1 TCCTAAATATCAAATATTGC
8529089 TCCTAAATATCAAATATTGC
1 TCCTAAATATCAAATATTGC
8529109 CTTAATTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.05, T:0.35
Consensus pattern (20 bp):
TCCTAAATATCAAATATTGC
Found at i:8530805 original size:11 final size:11
Alignment explanation
Indices: 8530789--8530813 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8530779 ACAGATTCGT
8530789 AAAACAAAATA
1 AAAACAAAATA
8530800 AAAACAAAATA
1 AAAACAAAATA
8530811 AAA
1 AAA
8530814 TAACGACGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAACAAAATA
Found at i:8533740 original size:21 final size:21
Alignment explanation
Indices: 8533714--8533754 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8533704 TTTATTTATC
8533714 TATATTATAATTATTT-ATATT
1 TATATT-TAATTATTTGATATT
*
8533735 TATATTTGATTATTTGATAT
1 TATATTTAATTATTTGATAT
8533755 AAAAAGTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (21 bp):
TATATTTAATTATTTGATATT
Found at i:8538490 original size:21 final size:21
Alignment explanation
Indices: 8538464--8538504 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8538454 AGACGAGCAA
* *
8538464 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
8538485 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
8538505 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:8540443 original size:16 final size:16
Alignment explanation
Indices: 8540410--8540443 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8540400 GGAGATTGTT
* *
8540410 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
8540426 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
8540442 AA
1 AA
8540444 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:8548773 original size:25 final size:25
Alignment explanation
Indices: 8548745--8548796 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
8548735 TAGCTCTTTC
8548745 GAGCCATATAACAT-GAAGCTCATGT
1 GAGCCATATAAC-TGGAAGCTCATGT
* *
8548770 GAGCCATGTAACTGGAAGCTTATGT
1 GAGCCATATAACTGGAAGCTCATGT
8548795 GA
1 GA
8548797 ACTAGATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 23 0.96
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (25 bp):
GAGCCATATAACTGGAAGCTCATGT
Found at i:8548939 original size:25 final size:24
Alignment explanation
Indices: 8548911--8548963 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
8548901 ATATCGTGAA
*
8548911 GCTCATGAGACCCATACAACGGGAT
1 GCTCAT-AGACCCAAACAACGGGAT
* * *
8548936 GCTCATAGAGCTAAATAACGGGAT
1 GCTCATAGACCCAAACAACGGGAT
8548960 GCTC
1 GCTC
8548964 TTGCGAGCTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.19
Consensus pattern (24 bp):
GCTCATAGACCCAAACAACGGGAT
Found at i:8557412 original size:102 final size:102
Alignment explanation
Indices: 8557236--8557437 Score: 377
Period size: 102 Copynumber: 2.0 Consensus size: 102
8557226 TTCATTACTA
8557236 ATCATCTATTAGGAGGCCCCCGAATTCTCCAATTTTCAGTATTCTGCACTGTCCACAATGACCAG
1 ATCATCTATTAGGAGGCCCCCGAATTCTCCAATTTTCAGTATTCTGCACTGTCCACAATGACCAG
8557301 ATAACAACACCCTGGTGTTAAGATGTCTTGTCACAGC
66 ATAACAACACCCTGGTGTTAAGATGTCTTGTCACAGC
* *
8557338 ATCATCTATTAGGAGGGCCCCGAATTCTCCAATTTTCAGTATTCTGCAGTGTCCACAATGACCAG
1 ATCATCTATTAGGAGGCCCCCGAATTCTCCAATTTTCAGTATTCTGCACTGTCCACAATGACCAG
*
8557403 ATAACAACACCCTGGTGTTGAGATGTCTTGTCACA
66 ATAACAACACCCTGGTGTTAAGATGTCTTGTCACA
8557438 ACTTACATAG
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 97 1.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (102 bp):
ATCATCTATTAGGAGGCCCCCGAATTCTCCAATTTTCAGTATTCTGCACTGTCCACAATGACCAG
ATAACAACACCCTGGTGTTAAGATGTCTTGTCACAGC
Found at i:8559484 original size:58 final size:57
Alignment explanation
Indices: 8559394--8559510 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 57
8559384 CATGTAGGAA
8559394 TAAAAAAAGCCCGTTTTTCCTGCATAAAATGACAACGTTTTTGTGTTACGTAAATGAT
1 TAAAAAAAGCCCGTTTTTCCTGCATAAAATGACAACGTTTTTGTGTTACGT-AATGAT
8559452 TAAAAAAAGCCCGTTTTTCCTGCATAAAATGACAACGTTTTTGTGTTACGTAATGAT
1 TAAAAAAAGCCCGTTTTTCCTGCATAAAATGACAACGTTTTTGTGTTACGTAATGAT
8559509 TA
1 TA
8559511 TGCAGCCGCT
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
57 8 0.14
58 51 0.86
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.35
Consensus pattern (57 bp):
TAAAAAAAGCCCGTTTTTCCTGCATAAAATGACAACGTTTTTGTGTTACGTAATGAT
Found at i:8569621 original size:8 final size:8
Alignment explanation
Indices: 8569608--8569635 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
8569598 TGAATTGATT
8569608 TTTTAAAA
1 TTTTAAAA
8569616 TTTTAAAA
1 TTTTAAAA
8569624 TTTTAAAA
1 TTTTAAAA
8569632 TTTT
1 TTTT
8569636 TTAATTGGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
TTTTAAAA
Found at i:8573217 original size:11 final size:11
Alignment explanation
Indices: 8573201--8573241 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
8573191 ATATATTTTT
8573201 TATTTTTAAAA
1 TATTTTTAAAA
8573212 TATTTTTAAAA
1 TATTTTTAAAA
*
8573223 TACTTTTAAAA
1 TATTTTTAAAA
8573234 TACTTTTT
1 TA-TTTTT
8573242 TTATTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
11 23 0.85
12 4 0.15
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:8573270 original size:22 final size:22
Alignment explanation
Indices: 8573245--8573288 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
8573235 ACTTTTTTTA
8573245 TTTTTT-TATTT-TTAAAATAAT
1 TTTTTTGTATTTATTAAAA-AAT
8573266 TTTTTTGTATTTATTAAAAAAT
1 TTTTTTGTATTTATTAAAAAAT
8573288 T
1 T
8573289 AGACCGGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.29
22 9 0.43
23 6 0.29
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTTTTGTATTTATTAAAAAAT
Found at i:8582208 original size:31 final size:32
Alignment explanation
Indices: 8582173--8582251 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 32
8582163 AATTATATTT
8582173 TATTA-ATTTAATATTAAAGTGATTATCTTAA
1 TATTACATTTAATATTAAAGTGATTATCTTAA
* * *
8582204 TATTACATTTAAT-TTAATGTTATTATTTTAA
1 TATTACATTTAATATTAAAGTGATTATCTTAA
*
8582235 TA--AGATTTAATATTAAA
1 TATTACATTTAATATTAAA
8582252 TTTAATCTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
29 8 0.20
30 4 0.10
31 22 0.54
32 7 0.17
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.51
Consensus pattern (32 bp):
TATTACATTTAATATTAAAGTGATTATCTTAA
Found at i:8583590 original size:25 final size:25
Alignment explanation
Indices: 8583556--8583641 Score: 136
Period size: 26 Copynumber: 3.3 Consensus size: 25
8583546 TTTACTCTAG
8583556 TAAAATTTTTGATGATTTTACCCCGA
1 TAAAA-TTTTGATGATTTTACCCCGA
8583582 TAAAATTTTGATGATTTTAACCCCGA
1 TAAAATTTTGATGATTTT-ACCCCGA
*
8583608 TAAAATTTTGATGATTTTAGCCCTGA
1 TAAAATTTTGATGATTTTA-CCCCGA
8583634 TAAAATTT
1 TAAAATTT
8583642 CAAGAAAGTT
Statistics
Matches: 57, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
25 14 0.25
26 43 0.75
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.42
Consensus pattern (25 bp):
TAAAATTTTGATGATTTTACCCCGA
Found at i:8592338 original size:21 final size:21
Alignment explanation
Indices: 8592314--8592358 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
8592304 AAAAAAATCT
8592314 AAAAATAAACAGAAAA-TTCAA
1 AAAAATAAACA-AAAATTTCAA
* *
8592335 AAAAATAGATAAAAATTTCAA
1 AAAAATAAACAAAAATTTCAA
8592356 AAA
1 AAA
8592359 TAGATAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.71, C:0.07, G:0.04, T:0.18
Consensus pattern (21 bp):
AAAAATAAACAAAAATTTCAA
Found at i:8593204 original size:22 final size:24
Alignment explanation
Indices: 8593157--8593213 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 24
8593147 AAAACTCTAA
8593157 AAAATTGTA-TATTTTTAAAATATAT
1 AAAA-TGTATTATTTTT-AAATATAT
8593182 AAAATGTATTATTTTT-AAT-TAT
1 AAAATGTATTATTTTTAAATATAT
*
8593204 AAAATATATT
1 AAAATGTATT
8593214 TAAAATATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 12 0.40
23 3 0.10
24 4 0.13
25 11 0.37
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (24 bp):
AAAATGTATTATTTTTAAATATAT
Found at i:8593729 original size:19 final size:18
Alignment explanation
Indices: 8593702--8593739 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
8593692 TATTTTTATT
8593702 AATTTAAA-TATATTATAA
1 AATTTAAATTA-ATTATAA
8593720 AATTTAAAATTAATTATAA
1 AATTT-AAATTAATTATAA
8593739 A
1 A
8593740 CTAAATCCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 11 0.61
20 2 0.11
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
AATTTAAATTAATTATAA
Found at i:8595100 original size:16 final size:15
Alignment explanation
Indices: 8595065--8595103 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
8595055 TTTAAAATTT
*
8595065 ATTATTTAAATATAA
1 ATTATTAAAATATAA
*
8595080 TTTATTAAAATGATAA
1 ATTATTAAAAT-ATAA
8595096 ATTATTAA
1 ATTATTAA
8595104 TATAATTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (15 bp):
ATTATTAAAATATAA
Found at i:8595108 original size:13 final size:14
Alignment explanation
Indices: 8595070--8595113 Score: 54
Period size: 16 Copynumber: 3.1 Consensus size: 14
8595060 AATTTATTAT
8595070 TTAAATATAATTTA
1 TTAAATATAATTTA
*
8595084 TTAAAATGATAAATTA
1 TT-AAAT-ATAATTTA
8595100 TT-AATATAATTTA
1 TTAAATATAATTTA
8595113 T
1 T
8595114 CATATGATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 8 0.31
14 5 0.19
15 4 0.15
16 9 0.35
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (14 bp):
TTAAATATAATTTA
Found at i:8595888 original size:21 final size:21
Alignment explanation
Indices: 8595859--8595899 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8595849 AATTAATAAA
* *
8595859 AATTTTAAAAACAATATTAAT
1 AATTGTAAAAAAAATATTAAT
8595880 AATTGTAAAAAAAATATTAA
1 AATTGTAAAAAAAATATTAA
8595900 AAACTTTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (21 bp):
AATTGTAAAAAAAATATTAAT
Found at i:8601252 original size:10 final size:10
Alignment explanation
Indices: 8601237--8601293 Score: 64
Period size: 10 Copynumber: 5.6 Consensus size: 10
8601227 ATTATTTACT
8601237 ATTTTTAATA
1 ATTTTTAATA
8601247 ATTTTTACA-A
1 ATTTTTA-ATA
*
8601257 ATTTTAAATA
1 ATTTTTAATA
8601267 ATGTTTT-ATA
1 AT-TTTTAATA
8601277 ATTTTTAATAA
1 ATTTTTAAT-A
8601288 ATTTTT
1 ATTTTT
8601294 GGGTAAATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
9 5 0.12
10 24 0.60
11 11 0.28
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:8601396 original size:30 final size:31
Alignment explanation
Indices: 8601360--8601428 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 31
8601350 AGGTTTCAAT
*
8601360 CAGTCACTCAAC-TTT-AGAAAAATGACAAAC
1 CAGTCACT-AACATTTCAAAAAAATGACAAAC
*
8601390 CAGTCACTAACATTTTCAAAAAAATGACAAAT
1 CAGTCACTAACA-TTTCAAAAAAATGACAAAC
8601422 CAGTCAC
1 CAGTCAC
8601429 CCACAAACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 3 0.09
30 8 0.24
31 3 0.09
32 20 0.59
ACGTcount: A:0.46, C:0.23, G:0.09, T:0.22
Consensus pattern (31 bp):
CAGTCACTAACATTTCAAAAAAATGACAAAC
Found at i:8601495 original size:21 final size:21
Alignment explanation
Indices: 8601466--8601507 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8601456 ACGGGACAGG
* *
8601466 TGACGTGGCCAGTTAACTAGC
1 TGACATGGCCAATTAACTAGC
8601487 TGACATGGCCAATTAACTAGC
1 TGACATGGCCAATTAACTAGC
8601508 CACGTTAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (21 bp):
TGACATGGCCAATTAACTAGC
Found at i:8601581 original size:3 final size:3
Alignment explanation
Indices: 8601573--8601608 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
8601563 CCCAAATAAC
*
8601573 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA ATA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
8601609 GATCCTATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.03
Consensus pattern (3 bp):
AGA
Found at i:8609737 original size:19 final size:19
Alignment explanation
Indices: 8609691--8609746 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
8609681 TAAATGACTC
*
8609691 TTTTATAAATTCTTTATTAT
1 TTTTATAAATT-TTTATTAA
*
8609711 TCTTTATAAGTTTTTATTAA
1 T-TTTATAAATTTTTATTAA
*
8609731 TTTTATAATTTTTTAT
1 TTTTATAAATTTTTAT
8609747 GAAAAAATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.44
20 9 0.28
21 9 0.28
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTTATAAATTTTTATTAA
Found at i:8614800 original size:18 final size:19
Alignment explanation
Indices: 8614772--8614808 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
8614762 AACATCCCTA
*
8614772 TAAATATATTTTTATTAAT
1 TAAATATATTTTTACTAAT
8614791 TAAA-ATATTTTTACTAAT
1 TAAATATATTTTTACTAAT
8614809 ATAATTTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (19 bp):
TAAATATATTTTTACTAAT
Found at i:8630385 original size:10 final size:10
Alignment explanation
Indices: 8630372--8630400 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
8630362 TTTTATATTT
8630372 ATATATATAC
1 ATATATATAC
8630382 ATATATATAC
1 ATATATATAC
8630392 ATATATATA
1 ATATATATA
8630401 AAAAAAACCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATATATAC
Found at i:8637520 original size:18 final size:18
Alignment explanation
Indices: 8637497--8637532 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8637487 TCAAATCTAT
8637497 CCGAAGTAACAGTATGAC
1 CCGAAGTAACAGTATGAC
*
8637515 CCGAAGTAATAGTATGAC
1 CCGAAGTAACAGTATGAC
8637533 GCCCAGTGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.19
Consensus pattern (18 bp):
CCGAAGTAACAGTATGAC
Found at i:8642327 original size:104 final size:104
Alignment explanation
Indices: 8642147--8642413 Score: 446
Period size: 104 Copynumber: 2.6 Consensus size: 104
8642137 TAACCGTTAT
* *
8642147 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
8642212 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
8642251 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
8642316 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* * * **
8642355 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
8642414 TTTATATACA
Statistics
Matches: 153, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
104 152 0.99
105 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.18
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:8642775 original size:29 final size:29
Alignment explanation
Indices: 8642742--8642805 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
8642732 TAATCCACCA
8642742 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
8642771 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
8642801 CCCAA
1 CCCAA
8642806 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:8642779 original size:30 final size:30
Alignment explanation
Indices: 8642749--8642805 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
8642739 CCACCCAACT
8642749 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
8642778 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
8642806 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:8643973 original size:27 final size:27
Alignment explanation
Indices: 8643933--8643987 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
8643923 TAAATCATTA
* *
8643933 CGGGTTACTTACCAAAAGAGGAAGATT
1 CGGGTAACTCACCAAAAGAGGAAGATT
*
8643960 CGGGTAACTCACCAGAAGAGGAAGATT
1 CGGGTAACTCACCAAAAGAGGAAGATT
8643987 C
1 C
8643988 TTAGCACATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.18
Consensus pattern (27 bp):
CGGGTAACTCACCAAAAGAGGAAGATT
Found at i:8644299 original size:15 final size:15
Alignment explanation
Indices: 8644274--8644310 Score: 65
Period size: 15 Copynumber: 2.4 Consensus size: 15
8644264 ACAGAATTAA
8644274 AAATATGGACGAATTG
1 AAAT-TGGACGAATTG
8644290 AAATTGGACGAATTG
1 AAATTGGACGAATTG
8644305 AAATTG
1 AAATTG
8644311 AAATTGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.43, C:0.05, G:0.24, T:0.27
Consensus pattern (15 bp):
AAATTGGACGAATTG
Found at i:8648478 original size:3 final size:3
Alignment explanation
Indices: 8648467--8648514 Score: 51
Period size: 3 Copynumber: 16.0 Consensus size: 3
8648457 GTCTGTTTTT
* * * * *
8648467 TTA TAA TTA TTA TCA TTA TTA TTA TTA TCA TCA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8648515 CTACAACCTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.56
Consensus pattern (3 bp):
TTA
Found at i:8648490 original size:15 final size:15
Alignment explanation
Indices: 8648467--8648514 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
8648457 GTCTGTTTTT
8648467 TTATAATTATTATCA
1 TTATAATTATTATCA
*
8648482 TTATTATTATTATCA
1 TTATAATTATTATCA
* * *
8648497 TCATCATTATTATTA
1 TTATAATTATTATCA
8648512 TTA
1 TTA
8648515 CTACAACCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.56
Consensus pattern (15 bp):
TTATAATTATTATCA
Found at i:8651182 original size:23 final size:22
Alignment explanation
Indices: 8651114--8651185 Score: 71
Period size: 21 Copynumber: 3.4 Consensus size: 22
8651104 TGATCAGTAA
*
8651114 ACGACACATAAGTGCTTGA-A-
1 ACGACACATAAGTGCCTGAGAT
* *
8651134 ACGACACACGAGGTGCCT--GAT
1 ACGACACA-TAAGTGCCTGAGAT
8651155 ACGACACATAAAGTGCCTGAGAT
1 ACGACACAT-AAGTGCCTGAGAT
8651178 ACGACACA
1 ACGACACA
8651186 GGATACGACA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
20 9 0.22
21 21 0.51
23 11 0.27
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (22 bp):
ACGACACATAAGTGCCTGAGAT
Found at i:8651732 original size:36 final size:36
Alignment explanation
Indices: 8651692--8651762 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
8651682 AGATTTGAAT
* *
8651692 TATAGTAATACAAACCGGAATTCTCTTCGGATTTAG
1 TATAGTAATACAAACCGAAATTCTCTTCGAATTTAG
8651728 TATAGTAATACAAACCGAAATTCTCTTCGAATTTA
1 TATAGTAATACAAACCGAAATTCTCTTCGAATTTA
8651763 ATCCTCGACG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.34
Consensus pattern (36 bp):
TATAGTAATACAAACCGAAATTCTCTTCGAATTTAG
Found at i:8652540 original size:5 final size:5
Alignment explanation
Indices: 8652530--8652582 Score: 97
Period size: 5 Copynumber: 10.6 Consensus size: 5
8652520 TTTTTACATA
*
8652530 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAGT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
8652580 ATA
1 ATA
8652583 TTTAAAACAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:8654427 original size:15 final size:14
Alignment explanation
Indices: 8654407--8654447 Score: 59
Period size: 15 Copynumber: 3.0 Consensus size: 14
8654397 AAATATGGAC
8654407 GAATTGAAATTGTA
1 GAATTGAAATTGTA
8654421 TGAATTGAAATTG-A
1 -GAATTGAAATTGTA
8654435 -AATTGAAATTGTA
1 GAATTGAAATTGTA
8654448 AAAAGGATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 11 0.44
13 1 0.04
14 1 0.04
15 12 0.48
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.37
Consensus pattern (14 bp):
GAATTGAAATTGTA
Found at i:8655589 original size:54 final size:54
Alignment explanation
Indices: 8655515--8655617 Score: 163
Period size: 54 Copynumber: 1.9 Consensus size: 54
8655505 TTTTTAAATA
* *
8655515 ATAGTCTCCCCCTGAGCAGTAGCTT-CTCATTGAATAATGGTGTTTTTTGGAACT
1 ATAGTCTCCCCCTGAACAGTAGCTTCCTC-TTGAACAATGGTGTTTTTTGGAACT
*
8655569 ATAGTTTCCCCCTGAACAGTAGCTTCCTCTTGAACAATGGTGTTTTTTG
1 ATAGTCTCCCCCTGAACAGTAGCTTCCTCTTGAACAATGGTGTTTTTTG
8655618 AAATAAGGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
54 42 0.93
55 3 0.07
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (54 bp):
ATAGTCTCCCCCTGAACAGTAGCTTCCTCTTGAACAATGGTGTTTTTTGGAACT
Found at i:8657894 original size:100 final size:100
Alignment explanation
Indices: 8657746--8658006 Score: 477
Period size: 100 Copynumber: 2.6 Consensus size: 100
8657736 GAATATACTG
* * * *
8657746 AACCTTTTGACGCGAAGAGAGATGACAGCCAAACACCCCACCCTGGTTACTCAGCCCAGCAAACT
1 AACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCAACCCCGGTTACTCAGCCCAACAAACT
8657811 CCTAATTTATTATAATTTTTCTTAAGAACACATCA
66 CCTAATTTATTATAATTTTTCTTAAGAACACATCA
*
8657846 AACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCTACCCCGGTTACTCAGCCCAACAAACT
1 AACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCAACCCCGGTTACTCAGCCCAACAAACT
8657911 CCTAATTTATTATAATTTTTCTTAAGAACACATCA
66 CCTAATTTATTATAATTTTTCTTAAGAACACATCA
8657946 AACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCAACCCCGGTTACTCAGCCCAACA
1 AACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCAACCCCGGTTACTCAGCCCAACA
8658007 TGTTCTTAAC
Statistics
Matches: 156, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 156 1.00
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.22
Consensus pattern (100 bp):
AACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCAACCCCGGTTACTCAGCCCAACAAACT
CCTAATTTATTATAATTTTTCTTAAGAACACATCA
Found at i:8670436 original size:2 final size:2
Alignment explanation
Indices: 8670429--8670463 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8670419 CTTCTAGAAT
8670429 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8670464 ATTTGACCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:8670870 original size:23 final size:23
Alignment explanation
Indices: 8670839--8670889 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
8670829 ACCTACTTTC
* *
8670839 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
8670862 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
8670885 TTACA
1 TTACA
8670890 TGGCACATGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:8672088 original size:13 final size:13
Alignment explanation
Indices: 8672070--8672097 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8672060 TTTCATTATT
8672070 ATTTAACCTATAA
1 ATTTAACCTATAA
8672083 ATTTAACCTATAA
1 ATTTAACCTATAA
8672096 AT
1 AT
8672098 GACTCTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.39
Consensus pattern (13 bp):
ATTTAACCTATAA
Found at i:8672237 original size:19 final size:20
Alignment explanation
Indices: 8672207--8672245 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
8672197 GTTTTTATCT
8672207 CCATCTTTTTATACTTTTCG
1 CCATCTTTTTATACTTTTCG
8672227 CCATC-TTTTATACTTTTCG
1 CCATCTTTTTATACTTTTCG
8672246 TTCTTTTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.15, C:0.26, G:0.05, T:0.54
Consensus pattern (20 bp):
CCATCTTTTTATACTTTTCG
Found at i:8680330 original size:18 final size:18
Alignment explanation
Indices: 8680285--8680333 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
8680275 CTTTGTAGCT
*
8680285 TTGA-TGAGCTCGCATTA
1 TTGAGTGAGCTCGCAGTA
* *
8680302 TTG-GAGAGCTCGCAGTC
1 TTGAGTGAGCTCGCAGTA
8680319 TTGAGTGAGCTCGCA
1 TTGAGTGAGCTCGCA
8680334 ACTTTGCGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 16 0.62
18 10 0.38
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (18 bp):
TTGAGTGAGCTCGCAGTA
Found at i:8681868 original size:21 final size:21
Alignment explanation
Indices: 8681844--8681902 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
8681834 TGGCTCAAGG
*
8681844 ACATGGCCGTGTGGCTATCCC
1 ACATGCCCGTGTGGCTATCCC
8681865 ACATGCCCGTGTGGCTATCCC
1 ACATGCCCGTGTGGCTATCCC
* * *
8681886 ATATACTCGTGTGGCTA
1 ACATGCCCGTGTGGCTA
8681903 CTCCATACAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.17, C:0.31, G:0.25, T:0.27
Consensus pattern (21 bp):
ACATGCCCGTGTGGCTATCCC
Found at i:8681908 original size:21 final size:21
Alignment explanation
Indices: 8681850--8681919 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
8681840 AAGGACATGG
* **
8681850 CCGTGTGGCTATCCCACATGC
1 CCGTGTGGCTATCCCATACAC
*
8681871 CCGTGTGGCTATCCCATATAC
1 CCGTGTGGCTATCCCATACAC
*
8681892 TCGTGTGGCTA-CTCCATACAC
1 CCGTGTGGCTATC-CCATACAC
8681913 CCGTGTG
1 CCGTGTG
8681920 CTCAGACTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
20 1 0.02
21 42 0.98
ACGTcount: A:0.16, C:0.34, G:0.23, T:0.27
Consensus pattern (21 bp):
CCGTGTGGCTATCCCATACAC
Found at i:8696269 original size:46 final size:45
Alignment explanation
Indices: 8696166--8696463 Score: 476
Period size: 46 Copynumber: 6.6 Consensus size: 45
8696156 TACGTATGAT
* *
8696166 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTAC
8696209 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTAC
*
8696255 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTAC
*
8696300 CACTTATCACTTTGTCACTTGATTAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTAC
* * *
8696346 CACTTATTC-TTTTGTCACTTGATTAGATAAGTGTAGCTAGGCTAC
1 CACTTA-TCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTAC
8696391 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTAC
8696437 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8696464 AGTACTCAAA
Statistics
Matches: 238, Mismatches: 10, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
43 10 0.04
44 7 0.03
45 102 0.43
46 117 0.49
47 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (45 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTAC
Found at i:8696285 original size:91 final size:91
Alignment explanation
Indices: 8696166--8696463 Score: 530
Period size: 91 Copynumber: 3.3 Consensus size: 91
8696156 TACGTATGAT
*
8696166 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
8696229 GATCAGATAAGTGTAGCTAAAGCTAC
66 GATCAGATAAGTGTAGCTAAAGCTAC
8696255 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
*
8696320 GATTAGATAAGTGTAGCTAAAGCTAC
66 GATCAGATAAGTGTAGCTAAAGCTAC
* *
8696346 CACTTATTC-TTTTGTCACTTGATTAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACT
1 CACTTA-TCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACT
8696410 TGATCAGATAAGTGTAGCTAAAGCTAC
65 TGATCAGATAAGTGTAGCTAAAGCTAC
8696437 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8696464 AGTACTCAAA
Statistics
Matches: 198, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
89 10 0.05
90 7 0.04
91 179 0.90
92 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (91 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
GATCAGATAAGTGTAGCTAAAGCTAC
Found at i:8701178 original size:36 final size:35
Alignment explanation
Indices: 8701097--8701163 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
8701087 ACGACCTGAC
* *
8701097 CACATGGTCTACAGAGTTTCACGCAACCGTGTCCA
1 CACAAGGTCTACAGAGTTTCACACAACCGTGTCCA
* * *
8701132 CACAAGGTCTATAGAGTTTTACACAGCCGTGT
1 CACAAGGTCTACAGAGTTTCACACAACCGTGT
8701164 GTCACACACA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (35 bp):
CACAAGGTCTACAGAGTTTCACACAACCGTGTCCA
Found at i:8702247 original size:5 final size:5
Alignment explanation
Indices: 8702237--8702267 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
8702227 AATGTATAAT
8702237 AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC A
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC A
8702268 TATAAGTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:8702293 original size:6 final size:6
Alignment explanation
Indices: 8702277--8702344 Score: 55
Period size: 6 Copynumber: 10.7 Consensus size: 6
8702267 ATATAAGTCT
* * * *
8702277 TAAAAA TAAAATA AAAACAA CTAATAA TAAAAA TAAAAG TACAAA TAAAAA
1 TAAAAA TAAAA-A TAAA-AA -TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
*
8702328 TAAAACA TAAAAC TAAA
1 TAAAA-A TAAAAA TAAA
8702345 TAGAGTTAGT
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
6 33 0.67
7 13 0.27
8 3 0.06
ACGTcount: A:0.74, C:0.07, G:0.01, T:0.18
Consensus pattern (6 bp):
TAAAAA
Found at i:8702307 original size:21 final size:22
Alignment explanation
Indices: 8702277--8702332 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
8702267 ATATAAGTCT
*
8702277 TAAAAATAAAATAAAA-ACAAC
1 TAAAAATAAAATAAAAGACAAA
*
8702298 TAATAATAAAAATAAAAGTACAAA
1 TAAAAAT-AAAATAAAAG-ACAAA
8702322 TAAAAATAAAA
1 TAAAAATAAAA
8702333 CATAAAACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 6 0.21
22 9 0.31
23 4 0.14
24 10 0.34
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (22 bp):
TAAAAATAAAATAAAAGACAAA
Found at i:8705330 original size:174 final size:174
Alignment explanation
Indices: 8705040--8705388 Score: 581
Period size: 174 Copynumber: 2.0 Consensus size: 174
8705030 ATTGACCTTT
*
8705040 CATCCTTATAACACCCTCTACTCGGCCTGGTCACAAAGCCCGAATATAAAGATGTCACACCACCG
1 CATCCTTATAACACCCTATACTCGGCCTGGTCACAAAGCCCGAATATAAAGATGTCACACCACCG
* * * *
8705105 TCTCACTACTTGTACGTTACAACGTTCATTTTATTAAATTTGACACATGTTATTCTTTGCATTTG
66 TCTCACTACTTATACGTTACAACGTTCATTTTATTAAAGTCGACACATGTTATTCTTCGCATTTG
8705170 CACAGGTTTTAAGACATAAATGCATTAATCATCATTAAATCATG
131 CACAGGTTTTAAGACATAAATGCATTAATCATCATTAAATCATG
* * *** *
8705214 CATCCTTGTAACACCCTATACTCGTCCTGGTTGTAAAGCTCGAATATAAAGATGTCACACCACCG
1 CATCCTTATAACACCCTATACTCGGCCTGGTCACAAAGCCCGAATATAAAGATGTCACACCACCG
*
8705279 TCTCACTACTTATACGTTACAACGTTTATTTTATTAAAGTCGACACATGTTATTCTTCGCATTTG
66 TCTCACTACTTATACGTTACAACGTTCATTTTATTAAAGTCGACACATGTTATTCTTCGCATTTG
*
8705344 CACAGGTTTTAAGACATACATGCATTAATCATCATTAAATCATG
131 CACAGGTTTTAAGACATAAATGCATTAATCATCATTAAATCATG
8705388 C
1 C
8705389 TAGGCATACA
Statistics
Matches: 162, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
174 162 1.00
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (174 bp):
CATCCTTATAACACCCTATACTCGGCCTGGTCACAAAGCCCGAATATAAAGATGTCACACCACCG
TCTCACTACTTATACGTTACAACGTTCATTTTATTAAAGTCGACACATGTTATTCTTCGCATTTG
CACAGGTTTTAAGACATAAATGCATTAATCATCATTAAATCATG
Found at i:8711041 original size:14 final size:13
Alignment explanation
Indices: 8710931--8711046 Score: 62
Period size: 13 Copynumber: 8.9 Consensus size: 13
8710921 AGCTTGATTG
*
8710931 AAAACTTGATTAA
1 AAAACTTGATGAA
8710944 AAACACTTGATGAA
1 AAA-ACTTGATGAA
* *
8710958 AAGACTTGATG-G
1 AAAACTTGATGAA
*
8710970 AAAGCTT-A--AA
1 AAAACTTGATGAA
*
8710980 AACAACTTGATG-C
1 AA-AACTTGATGAA
* *
8710993 AAAACTTAATAAA
1 AAAACTTGATGAA
* *
8711006 AAAACTTGGTAATTA
1 AAAACTTGATGA--A
8711021 AAAACTTGATGAA
1 AAAACTTGATGAA
*
8711034 AAACACTTTATGA
1 AAA-ACTTGATGA
8711047 TTAAATGAAA
Statistics
Matches: 77, Mismatches: 16, Indels: 19
0.69 0.14 0.17
Matches are distributed among these distances:
10 2 0.03
11 5 0.06
12 13 0.17
13 27 0.35
14 19 0.25
15 11 0.14
ACGTcount: A:0.50, C:0.11, G:0.13, T:0.26
Consensus pattern (13 bp):
AAAACTTGATGAA
Found at i:8712439 original size:19 final size:19
Alignment explanation
Indices: 8712393--8712486 Score: 134
Period size: 19 Copynumber: 4.8 Consensus size: 19
8712383 AATTTTTGAG
8712393 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
8712412 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
8712433 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* ** *
8712452 GATGTATAATCTTAAATAT
1 GATATGCAATCTTAGATAT
8712471 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
8712487 AGATATGATT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
19 46 0.71
21 19 0.29
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:8712472 original size:38 final size:39
Alignment explanation
Indices: 8712393--8712486 Score: 154
Period size: 38 Copynumber: 2.4 Consensus size: 39
8712383 AATTTTTGAG
*
8712393 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATAT-CAATCTTAAATAT
*
8712433 GATATGCAATCTTAGATATGATGTAT-AATCTTAAATAT
1 GATATGCAATCTTAGATATGATATATCAATCTTAAATAT
8712471 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
8712487 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
38 27 0.52
40 25 0.48
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (39 bp):
GATATGCAATCTTAGATATGATATATCAATCTTAAATAT
Found at i:8712512 original size:22 final size:21
Alignment explanation
Indices: 8712393--8712512 Score: 92
Period size: 19 Copynumber: 5.9 Consensus size: 21
8712383 AATTTTTGAG
* *
8712393 GATATGCAATCTTAGATATGAT
1 GATATGTAATCTTAGAGAT-AT
*
8712415 -ATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
8712433 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* *
8712452 GATGTATAATCTTA-A-ATAT
1 GATATGTAATCTTAGAGATAT
*
8712471 GATATGCAATCTTAGAAGATAT
1 GATATGTAATCTTAG-AGATAT
*
8712493 GATTTTGTAATCTTAGAGAT
1 GA-TATGTAATCTTAGAGAT
8712513 TTAATTTGTA
Statistics
Matches: 83, Mismatches: 9, Indels: 12
0.80 0.09 0.12
Matches are distributed among these distances:
18 2 0.02
19 46 0.55
20 1 0.01
21 13 0.16
22 10 0.12
23 11 0.13
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (21 bp):
GATATGTAATCTTAGAGATAT
Found at i:8718212 original size:41 final size:41
Alignment explanation
Indices: 8718167--8718282 Score: 187
Period size: 41 Copynumber: 2.8 Consensus size: 41
8718157 AGATTCACTA
* * * *
8718167 GCACTTAGCCTGTTAGGCTTAAAACCTGATTTAGATCACCG
1 GCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCG
*
8718208 GCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGTTCACCG
1 GCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCG
8718249 GCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
1 GCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
8718283 NGATATAGAC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (41 bp):
GCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCG
Found at i:8723620 original size:13 final size:13
Alignment explanation
Indices: 8723571--8723674 Score: 57
Period size: 12 Copynumber: 8.5 Consensus size: 13
8723561 TATTTCAGAA
8723571 GATG-AAAG-CTT
1 GATGAAAAGACTT
8723582 GATTG-AAA-ACTT
1 GA-TGAAAAGACTT
* *
8723594 GATTAAAAACACTT
1 GA-TGAAAAGACTT
8723608 GATGAAAAGACTT
1 GATGAAAAGACTT
8723621 GATG-AAAG-CTT
1 GATGAAAAGACTT
*
8723632 -A--AAAATAACTT
1 GATGAAAA-GACTT
* *
8723643 TATGTAAA-ACTT
1 GATGAAAAGACTT
*
8723655 AATGAAAAGACTT
1 GATGAAAAGACTT
8723668 GATGAAA
1 GATGAAA
8723675 GCTTAAAAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 20
0.73 0.08 0.20
Matches are distributed among these distances:
9 3 0.04
10 1 0.01
11 8 0.11
12 27 0.36
13 26 0.35
14 9 0.12
ACGTcount: A:0.47, C:0.09, G:0.16, T:0.28
Consensus pattern (13 bp):
GATGAAAAGACTT
Found at i:8723642 original size:22 final size:22
Alignment explanation
Indices: 8723612--8723684 Score: 85
Period size: 22 Copynumber: 3.2 Consensus size: 22
8723602 ACACTTGATG
8723612 AAAAGACTTGATGAAAGCTTAA
1 AAAAGACTTGATGAAAGCTTAA
* *
8723634 AAATA-ACTTTATGTAAAACTTAA
1 AAA-AGACTTGATG-AAAGCTTAA
8723657 TGAAAAGACTTGATGAAAGCTTAA
1 --AAAAGACTTGATGAAAGCTTAA
8723681 AAAA
1 AAAA
8723685 CTTGGTAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
22 14 0.33
23 9 0.21
24 9 0.21
25 10 0.24
ACGTcount: A:0.52, C:0.08, G:0.14, T:0.26
Consensus pattern (22 bp):
AAAAGACTTGATGAAAGCTTAA
Found at i:8723698 original size:47 final size:48
Alignment explanation
Indices: 8723599--8723707 Score: 145
Period size: 47 Copynumber: 2.3 Consensus size: 48
8723589 AACTTGATTA
8723599 AAAACACTTGATGAAAAGACTTGATGAAAGCTTAAAAATAACTTTATGT
1 AAAA-ACTTGATGAAAAGACTTGATGAAAGCTTAAAAATAACTTTATGT
*
8723648 -AAAACTTAATGAAAAGACTTGATGAAAGCTT-AAAA-AACTTGGTAAT-T
1 AAAAACTTGATGAAAAGACTTGATGAAAGCTTAAAAATAACTT--T-ATGT
8723695 AAAAACTTGATGA
1 AAAAACTTGATGA
8723708 CTTGATGAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
45 5 0.09
46 4 0.07
47 29 0.54
48 16 0.30
ACGTcount: A:0.49, C:0.09, G:0.15, T:0.28
Consensus pattern (48 bp):
AAAAACTTGATGAAAAGACTTGATGAAAGCTTAAAAATAACTTTATGT
Done.