genome.fa.s15.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  42  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12318500--12318546	22	2.2	21	88	3	67	63	6	19	10	1.47
12322822--12322857	3	12.0	3	100	0	72	66	0	0	33	0.92
12324019--12324143	33	3.8	33	75	7	103	16	42	12	28	1.85
12327294--12327348	19	3.0	19	73	5	51	60	16	0	23	1.36
12328945--12328977	16	2.1	16	94	0	57	21	12	0	66	1.23
12328944--12328977	17	2.1	16	94	5	59	20	11	0	67	1.21
12331197--12331242	23	2.1	22	84	8	58	32	10	2	54	1.47
12332085--12332281	98	2.0	98	94	0	349	28	10	23	37	1.88
12333453--12333504	14	3.7	14	77	10	52	53	0	1	44	1.11
12340362--12340405	11	3.8	12	80	19	58	25	31	0	43	1.55
12342309--12342348	18	2.2	18	90	0	62	20	30	7	42	1.79
12342914--12343263	22	16.4	21	74	10	223	49	31	0	18	1.52
12342915--12343263	43	8.2	43	78	14	298	49	31	0	18	1.52
12342962--12343254	44	6.9	42	79	11	260	50	31	0	17	1.49
12343047--12343128	15	5.6	15	75	16	73	53	30	0	15	1.43
12343235--12343287	15	3.6	15	79	5	72	47	30	0	22	1.52
12343228--12343287	29	2.1	29	90	0	93	48	30	0	21	1.51
12346260--12346823	125	4.5	124	83	3	718	29	23	17	29	1.97
12351663--12351909	31	8.0	30	71	10	142	28	13	17	40	1.87
12351676--12351911	62	3.8	62	84	2	321	28	13	17	39	1.88
12352657--12352694	10	4.0	10	93	6	62	21	0	36	42	1.53
12352657--12352694	19	2.0	19	90	10	60	21	0	36	42	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12356290--12356329	19	2.1	19	100	0	80	45	10	15	30	1.78
12370317--12370407	39	2.3	39	92	0	146	30	19	24	25	1.98
12370964--12371007	22	2.0	23	86	4	63	61	2	9	27	1.38
12374666--12374706	20	2.0	20	86	9	57	4	9	2	82	0.89
12374769--12374837	20	3.3	20	67	25	61	46	15	5	31	1.70
12383044--12383138	48	2.0	48	89	0	145	43	21	15	20	1.88
12383436--12383507	36	2.0	36	91	2	119	31	27	8	31	1.86
12388230--12388324	48	2.0	48	87	0	136	44	21	14	20	1.87
12388512--12388606	48	2.0	48	87	0	136	44	21	14	20	1.87
12388172--12388730	282	2.0	282	99	0	1109	38	19	17	24	1.92
12391094--12391164	37	1.9	37	85	0	97	38	1	22	38	1.63
12399378--12399573	43	4.6	42	80	8	211	33	27	17	22	1.96
12399378--12399570	85	2.3	84	92	0	314	33	26	17	22	1.96
12403201--12403245	16	2.9	16	83	3	56	0	15	6	77	0.96
12403875--12404001	3	42.3	3	68	14	57	29	5	3	61	1.36
12410107--12410131	10	2.5	10	100	0	50	28	28	12	32	1.92
12411836--12413137	88	14.8	88	84	3	1496	26	25	25	22	2.00
12411836--12413124	264	4.9	264	86	3	1679	26	25	25	22	2.00
12413179--12413273	50	1.9	50	87	8	140	33	29	15	21	1.94
12416076--12416236	43	3.8	42	77	9	173	35	26	18	20	1.95
12416039--12416237	85	2.4	85	89	0	319	35	25	17	21	1.95
12416039--12416275	85	2.8	85	85	1	253	35	25	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12418264--12418291	5	5.6	5	100	0	56	64	17	0	17	1.30
12421144--12421188	23	1.9	24	86	13	67	71	4	11	13	1.29
12436690--12436764	9	8.1	9	77	11	64	40	2	1	56	1.22
12436769--12436826	20	3.1	19	87	9	75	34	0	8	56	1.30
12436960--12437013	23	2.3	23	81	6	65	33	11	14	40	1.82
12438072--12438133	21	2.8	21	80	7	70	54	4	3	37	1.38
12438156--12438181	12	2.2	12	100	0	52	42	0	0	57	0.98
12439962--12440040	31	2.6	30	77	14	81	58	1	2	37	1.20
12439971--12440036	31	2.1	32	83	10	84	59	0	1	39	1.07
12444007--12444047	21	2.0	21	90	9	66	21	14	29	34	1.93
12444179--12444232	27	2.0	27	88	0	81	29	9	20	40	1.83
12444473--12444533	3	20.7	3	93	3	106	68	0	31	0	0.89
12445643--12445669	3	9.0	3	100	0	54	33	0	0	66	0.92
12446476--12446511	19	1.9	19	88	5	56	36	2	0	61	1.11
12451227--12451267	21	2.0	21	85	0	55	34	2	19	43	1.64
12451728--12451797	26	2.7	26	73	6	70	17	28	21	32	1.96
12451760--12451881	24	4.9	24	70	12	68	18	26	22	31	1.97
12451826--12451904	25	3.1	25	85	1	95	22	22	24	30	1.99
12457542--12457660	41	2.9	41	93	0	211	21	22	27	27	1.99
12458763--12458794	7	4.6	7	96	0	55	15	0	53	31	1.43
12459839--12460197	143	2.5	142	91	2	553	39	15	10	34	1.82
12460204--12460248	21	2.2	20	88	4	63	24	46	2	26	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12462749--12462781	17	1.9	17	93	0	57	57	15	12	15	1.65
12463466--12463495	12	2.5	12	88	0	51	30	6	13	50	1.67
12464240--12464315	37	2.1	37	100	0	152	25	18	13	43	1.86
12464634--12464658	5	5.0	5	100	0	50	60	0	0	40	0.97
12464713--12465091	43	8.8	43	86	2	501	21	17	31	30	1.96
12466016--12466054	20	2.0	20	90	10	62	15	23	5	56	1.59
12466306--12466498	50	3.7	51	79	5	183	24	28	21	25	1.99
12468194--12468237	23	1.9	23	85	0	61	43	4	6	45	1.51
12469541--12469625	23	3.8	23	78	7	95	21	20	20	38	1.93
12470008--12470058	25	2.0	25	88	0	75	39	7	17	35	1.79
12471267--12471299	18	1.9	17	88	11	50	51	6	18	24	1.68
12472587--12472665	25	3.1	25	78	8	88	21	25	22	30	1.99
12474419--12474598	9	18.3	9	67	16	58	59	2	2	35	1.24
12474527--12474580	20	2.8	20	88	2	83	59	0	5	35	1.21
12474770--12474799	14	2.1	14	100	0	60	36	6	16	40	1.75
12474870--12474904	17	2.1	17	89	5	54	71	0	0	28	0.86
12475016--12475214	20	9.9	20	72	17	103	31	2	4	62	1.26
12475026--12475089	29	2.2	29	78	10	69	28	3	3	65	1.23
12475148--12475232	19	4.5	18	72	18	66	32	1	2	63	1.15
12478651--12478692	22	1.9	22	85	0	57	9	14	2	73	1.18
12482924--12483524	304	2.0	303	90	1	945	30	9	17	42	1.81
12485553--12485688	64	2.1	64	88	0	200	42	2	13	41	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12495080--12495116	18	2.1	18	100	0	74	56	0	10	32	1.34
12505718--12505752	18	2.0	18	88	5	54	74	5	5	14	1.19
12509884--12509981	25	3.9	25	80	0	106	31	15	25	27	1.95
12509972--12510047	24	3.2	24	86	0	107	35	14	28	21	1.92
12512698--12512747	27	1.9	27	84	8	68	40	24	2	34	1.66
12518437--12518474	14	2.7	14	100	0	76	13	7	55	23	1.64
12518893--12519061	89	1.9	89	90	2	268	26	25	21	26	1.99
12518903--12519057	44	3.5	42	73	13	132	28	25	20	25	1.99
12518913--12519083	89	1.9	89	87	2	254	25	26	19	28	1.99
12519096--12519832	45	16.4	45	86	3	956	30	26	16	27	1.96
12521059--12521100	22	1.9	22	85	9	59	4	19	2	73	1.12
12526501--12526571	36	2.0	35	81	10	83	53	5	11	29	1.59
12526553--12527252	350	2.0	350	99	0	1382	47	13	17	21	1.81
12537129--12537369	80	3.0	80	98	0	464	38	12	17	30	1.88
12537357--12537387	7	4.4	7	91	0	53	16	0	38	45	1.47
12539604--12539635	16	1.9	17	93	6	57	34	0	9	56	1.32
12547055--12547094	18	2.1	20	90	9	66	52	0	0	47	1.00
12548439--12548488	19	2.6	19	90	0	73	12	14	54	20	1.71
12549339--12550304	88	11.0	88	88	1	1344	24	26	23	25	2.00
12549809--12550035	44	5.2	44	61	17	121	27	26	22	22	1.99
12551462--12551508	7	6.6	7	80	7	51	14	14	0	70	1.18
12551462--12551509	14	3.3	15	85	11	64	14	14	0	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12551470--12551508	13	2.8	14	88	7	53	15	12	0	71	1.14
12552393--12552446	22	2.5	20	77	16	54	12	7	9	70	1.33
12552416--12552487	38	1.9	38	88	2	110	8	11	6	73	1.24
12552408--12552488	37	2.2	36	82	8	103	8	11	7	72	1.27
12558941--12558984	22	2.0	22	86	8	63	18	0	11	70	1.16
12561722--12562287	27	21.0	27	83	3	567	41	20	17	20	1.90
12562611--12562785	28	6.3	28	91	0	262	24	24	22	28	1.99
12566028--12566075	20	2.3	21	86	10	64	33	20	4	41	1.72
12567374--12567493	40	3.0	40	79	2	141	25	28	14	31	1.94
12601453--12601586	40	3.4	39	79	6	137	37	19	22	20	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187