Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 49 of 187
Found at i:14542531 original size:19 final size:19
Alignment explanation
Indices: 14542509--14542562 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 19
14542499 TTTCTATTTT
14542509 TATAATATTTTTTATTAAA
1 TATAATATTTTTTATTAAA
** *
14542528 TATAA-ATTTAAATATT-TA
1 TATAATATTT-TTTATTAAA
14542546 T-TAATATTTTTTATTAA
1 TATAATATTTTTTATTAA
14542563 TATCCGGTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 7
0.67 0.15 0.18
Matches are distributed among these distances:
17 7 0.27
18 10 0.38
19 9 0.35
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TATAATATTTTTTATTAAA
Found at i:14544712 original size:181 final size:181
Alignment explanation
Indices: 14544397--14544761 Score: 649
Period size: 181 Copynumber: 2.0 Consensus size: 181
14544387 TGATTATGTG
14544397 ACATTAATGGTAAAATATACACTCCTAATTCTTTATATTCATGTTTTGATGCTTAATAGGGCACT
1 ACATTAATGGTAAAATATACACTCCTAATTCTTTATATTCATGTTTTGATGCTTAATAGGGCACT
*
14544462 TGGGAGCAATAGGAGTGAAAAATGGGTGGAAATTAGAACATTAGAGCATTTCAGAAGCTGTATAC
66 TGGGAGCAATAGGAGTGAAAAATGGGTGGAAATTAGAACATTAGAGCATTTCAGAAGCTGTACAC
14544527 ATGCAATAGACTTTCACACCGGCATGTGGATTTCAGGAACCATGTGCACTA
131 ATGCAATAGACTTTCACACCGGCATGTGGATTTCAGGAACCATGTGCACTA
* * * *
14544578 ACATTAATGGTAAATTGTACACTCTTAATTCTTTATATTCGTGTTTTGATGCTTAATAGGGCACT
1 ACATTAATGGTAAAATATACACTCCTAATTCTTTATATTCATGTTTTGATGCTTAATAGGGCACT
** *
14544643 TGGGAGCAATAGGAGTGAAAAATGGGTGGAAATTAGAACATTAGAGCATTTTGGAAGTTGTACAC
66 TGGGAGCAATAGGAGTGAAAAATGGGTGGAAATTAGAACATTAGAGCATTTCAGAAGCTGTACAC
*
14544708 ATGCAATAGACTTTCACACTGGCATGTGGATTTCAGGAACCATGTGCACTA
131 ATGCAATAGACTTTCACACCGGCATGTGGATTTCAGGAACCATGTGCACTA
14544759 ACA
1 ACA
14544762 GTGGAAAGTT
Statistics
Matches: 175, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
181 175 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.31
Consensus pattern (181 bp):
ACATTAATGGTAAAATATACACTCCTAATTCTTTATATTCATGTTTTGATGCTTAATAGGGCACT
TGGGAGCAATAGGAGTGAAAAATGGGTGGAAATTAGAACATTAGAGCATTTCAGAAGCTGTACAC
ATGCAATAGACTTTCACACCGGCATGTGGATTTCAGGAACCATGTGCACTA
Found at i:14545272 original size:43 final size:43
Alignment explanation
Indices: 14545171--14545264 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 43
14545161 ATAGCCCATA
* * *
14545171 ATAATATCTTATAATATGCCATTAGGAATCATATTGCTAAGAG
1 ATAATATCTTATAATATGCCATTAAGAATCAAATTGCTAAAAG
14545214 ATAATATCTTATAATAT-CTCATTAAGAATCAAATTGCTAAAAG
1 ATAATATCTTATAATATGC-CATTAAGAATCAAATTGCTAAAAG
14545257 ATAATATC
1 ATAATATC
14545265 CCATAATAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 1 0.02
43 46 0.98
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.35
Consensus pattern (43 bp):
ATAATATCTTATAATATGCCATTAAGAATCAAATTGCTAAAAG
Found at i:14550778 original size:16 final size:16
Alignment explanation
Indices: 14550757--14550788 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
14550747 CACCAATTAG
14550757 GATCCAACCCTAGACA
1 GATCCAACCCTAGACA
14550773 GATCCAACCCTAGACA
1 GATCCAACCCTAGACA
14550789 TGTACATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.38, G:0.12, T:0.12
Consensus pattern (16 bp):
GATCCAACCCTAGACA
Found at i:14551036 original size:20 final size:20
Alignment explanation
Indices: 14551011--14551052 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
14551001 GACCTATCTT
14551011 TTGCTTCA-TCATTCTTGTTC
1 TTGCTTCAGTCA-TCTTGTTC
*
14551031 TTGCTTGAGTCATCTTGTTC
1 TTGCTTCAGTCATCTTGTTC
14551051 TT
1 TT
14551053 TCCTTGACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.10, C:0.21, G:0.14, T:0.55
Consensus pattern (20 bp):
TTGCTTCAGTCATCTTGTTC
Found at i:14569170 original size:15 final size:15
Alignment explanation
Indices: 14569133--14569174 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
14569123 TGTTTAAATT
*
14569133 TTAATTAA-TCACAA
1 TTAATTAATTAACAA
*
14569147 TTAACTTAATTAACCA
1 TTAA-TTAATTAACAA
14569163 TTAATTAATTAA
1 TTAATTAATTAA
14569175 GCCTTAAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 4 0.17
15 12 0.50
16 8 0.33
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (15 bp):
TTAATTAATTAACAA
Found at i:14569850 original size:22 final size:22
Alignment explanation
Indices: 14569814--14569880 Score: 98
Period size: 22 Copynumber: 3.0 Consensus size: 22
14569804 TTATATGTCA
14569814 AAAATGTTAAAAATTAAATAAAT
1 AAAA-GTTAAAAATTAAATAAAT
*
14569837 AAAAGTTAATAATTAAATAAAT
1 AAAAGTTAAAAATTAAATAAAT
*
14569859 AAAAGTTAAAAACATAAATAAA
1 AAAAGTTAAAAA-TTAAATAAA
14569881 GGAAAGAAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
22 28 0.70
23 12 0.30
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.27
Consensus pattern (22 bp):
AAAAGTTAAAAATTAAATAAAT
Found at i:14571179 original size:14 final size:15
Alignment explanation
Indices: 14571150--14571183 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
14571140 AAATTTTAAA
14571150 TTTTATTTAAGATAT
1 TTTTATTTAAGATAT
*
14571165 TTTTATTTATG-TAT
1 TTTTATTTAAGATAT
14571179 TTTTA
1 TTTTA
14571184 GATATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTATTTAAGATAT
Found at i:14572814 original size:21 final size:21
Alignment explanation
Indices: 14572789--14572838 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
14572779 CAGATGCCGA
* *
14572789 ACCGGAAGAACAACAATCACC
1 ACCGGAAGAACAAAAACCACC
* *
14572810 ACCGGAGGAAGAAAAACCACC
1 ACCGGAAGAACAAAAACCACC
*
14572831 GCCGGAAG
1 ACCGGAAG
14572839 CTAGAGGAAG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.44, C:0.30, G:0.24, T:0.02
Consensus pattern (21 bp):
ACCGGAAGAACAAAAACCACC
Found at i:14577440 original size:19 final size:17
Alignment explanation
Indices: 14577400--14577432 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14577390 ACCGTTTCCT
14577400 AAAAGAAGAAAAAAAGA
1 AAAAGAAGAAAAAAAGA
14577417 AAAAG-AGAAATAAAAG
1 AAAAGAAGAAA-AAAAG
14577433 CAACAAAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (17 bp):
AAAAGAAGAAAAAAAGA
Found at i:14585116 original size:20 final size:20
Alignment explanation
Indices: 14585080--14585118 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
14585070 ATTAAATTAA
*
14585080 GTTAAAATAATATAATAAAT
1 GTTAAAATAATAAAATAAAT
14585100 GTTAAAA-ACATAAAATAAA
1 GTTAAAATA-ATAAAATAAA
14585119 AGCAGCTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (20 bp):
GTTAAAATAATAAAATAAAT
Found at i:14588725 original size:11 final size:11
Alignment explanation
Indices: 14588711--14588785 Score: 54
Period size: 10 Copynumber: 7.2 Consensus size: 11
14588701 AGGTTCTTTG
*
14588711 AATTATTATTT
1 AATTATTAATT
14588722 AATTA-TAATT
1 AATTATTAATT
14588732 AATTA-TAATT
1 AATTATTAATT
*
14588742 AAATT-TGAATT
1 -AATTATTAATT
*
14588753 -ATTATTTAAAT
1 AATTA-TTAATT
*
14588764 -ATAATTAATT
1 AATTATTAATT
14588774 AATTA-TAATT
1 AATTATTAATT
14588784 AA
1 AA
14588786 ATAACTGAAG
Statistics
Matches: 52, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
9 3 0.06
10 26 0.50
11 23 0.44
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (11 bp):
AATTATTAATT
Found at i:14588732 original size:6 final size:6
Alignment explanation
Indices: 14588711--14588784 Score: 52
Period size: 6 Copynumber: 12.8 Consensus size: 6
14588701 AGGTTCTTTG
*
14588711 AATTAT TATT-T AATTAT AA-T-T AATTAT AATTA- AATT-T GAATTAT
1 AATTAT AATTAT AATTAT AATTAT AATTAT AATTAT AATTAT -AATTAT
* *
14588755 TATT-T AAATAT AATTAATT AATTAT AATTA
1 AATTAT AATTAT AATT-A-T AATTAT AATTA
14588785 AATAACTGAA
Statistics
Matches: 53, Mismatches: 6, Indels: 18
0.69 0.08 0.23
Matches are distributed among these distances:
4 3 0.06
5 13 0.25
6 29 0.55
7 3 0.06
8 5 0.09
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (6 bp):
AATTAT
Found at i:14588770 original size:14 final size:14
Alignment explanation
Indices: 14588715--14588784 Score: 51
Period size: 14 Copynumber: 5.3 Consensus size: 14
14588705 TCTTTGAATT
*
14588715 ATTATTTAATTATA
1 ATTATTTAAATATA
*
14588729 ATTAATTATAAT-TA
1 ATTATTTA-AATATA
*
14588743 A--ATTTGAAT-T-
1 ATTATTTAAATATA
14588753 ATTATTTAAATATA
1 ATTATTTAAATATA
* *
14588767 ATTAATTAATTATA
1 ATTATTTAAATATA
14588781 ATTA
1 ATTA
14588785 AATAACTGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
10 1 0.02
11 4 0.09
12 10 0.23
13 1 0.02
14 26 0.59
15 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (14 bp):
ATTATTTAAATATA
Found at i:14588785 original size:10 final size:10
Alignment explanation
Indices: 14588720--14588774 Score: 55
Period size: 10 Copynumber: 5.7 Consensus size: 10
14588710 GAATTATTAT
14588720 TTAATTATAA
1 TTAATTATAA
14588730 TTAATTATAA
1 TTAATTATAA
14588740 TTAAATT-TGAA
1 TT-AATTAT-AA
14588751 TT-ATTAT--
1 TTAATTATAA
*
14588758 TTAAATATAA
1 TTAATTATAA
14588768 TTAATTA
1 TTAATTA
14588775 ATTATAATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
7 2 0.05
8 4 0.11
9 3 0.08
10 20 0.54
11 8 0.22
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (10 bp):
TTAATTATAA
Found at i:14588785 original size:14 final size:14
Alignment explanation
Indices: 14588727--14588785 Score: 52
Period size: 14 Copynumber: 4.2 Consensus size: 14
14588717 TATTTAATTA
14588727 TAATTAATTATAAT
1 TAATTAATTATAAT
14588741 TAAATTTGAA-T-T-AT
1 T-AA-TT-AATTATAAT
* *
14588755 TATTTAAATATAAT
1 TAATTAATTATAAT
14588769 TAATTAATTATAAT
1 TAATTAATTATAAT
14588783 TAA
1 TAA
14588786 ATAACTGAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 12
0.71 0.06 0.24
Matches are distributed among these distances:
11 2 0.06
12 3 0.08
13 2 0.06
14 21 0.58
15 3 0.08
16 3 0.08
17 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
TAATTAATTATAAT
Found at i:14592164 original size:2 final size:2
Alignment explanation
Indices: 14592157--14592189 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14592147 CACAAAGGGA
14592157 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
14592190 TTGACTCACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:14601226 original size:8 final size:7
Alignment explanation
Indices: 14601208--14601243 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
14601198 TAAAAGTATT
14601208 TTAAAAA
1 TTAAAAA
*
14601215 TAAAAAA
1 TTAAAAA
14601222 TTAAAAA
1 TTAAAAA
14601229 TTAAAAA
1 TTAAAAA
14601236 TTAAAAA
1 TTAAAAA
14601243 T
1 T
14601244 ATATATTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
TTAAAAA
Found at i:14608853 original size:22 final size:23
Alignment explanation
Indices: 14608810--14608871 Score: 74
Period size: 22 Copynumber: 2.7 Consensus size: 23
14608800 TCCGTCTCCT
*
14608810 ATTTAGTTTTATTTTTACTTGTA
1 ATTTAGGTTTATTTTTACTTGTA
*
14608833 ATTTAGGTTT-TTTTTAGTTGTA
1 ATTTAGGTTTATTTTTACTTGTA
14608855 ATTTTA-GTTTAGTTTTT
1 A-TTTAGGTTTA-TTTTT
14608872 TTTTTGTTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
22 16 0.47
23 13 0.38
24 5 0.15
ACGTcount: A:0.19, C:0.02, G:0.13, T:0.66
Consensus pattern (23 bp):
ATTTAGGTTTATTTTTACTTGTA
Found at i:14610635 original size:22 final size:23
Alignment explanation
Indices: 14610592--14610653 Score: 74
Period size: 22 Copynumber: 2.7 Consensus size: 23
14610582 CCCGTCTCCT
*
14610592 ATTTAGTTTTATTTTTACTTGTA
1 ATTTAGGTTTATTTTTACTTGTA
*
14610615 ATTTAGGTTT-TTTTTAGTTGTA
1 ATTTAGGTTTATTTTTACTTGTA
14610637 ATTTTA-GTTTAGTTTTT
1 A-TTTAGGTTTA-TTTTT
14610654 TTTTGTTCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
22 16 0.47
23 13 0.38
24 5 0.15
ACGTcount: A:0.19, C:0.02, G:0.13, T:0.66
Consensus pattern (23 bp):
ATTTAGGTTTATTTTTACTTGTA
Found at i:14615431 original size:17 final size:17
Alignment explanation
Indices: 14615402--14615435 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
14615392 TATAAAATCA
14615402 ATAATATAATATAATAT
1 ATAATATAATATAATAT
14615419 ATAA-ATAATTATAATAT
1 ATAATATAA-TATAATAT
14615436 TTATTAGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATAATATAATATAATAT
Found at i:14616612 original size:43 final size:42
Alignment explanation
Indices: 14616438--14616624 Score: 175
Period size: 43 Copynumber: 4.4 Consensus size: 42
14616428 AAGATCAGGG
* *
14616438 TCTTTAGCGGCGTTTTTATCTA-AAACGCCGCAATAGACCCTGA
1 TCTTTAGCGGCGCTTTT-TCCACAAACGCCGCAA-AGACCCTGA
* * *
14616481 T-TTATAGCGGCG-TTTATACCTCAAACGCCGCAATAGACTCTGA
1 TCTT-TAGCGGCGCTTT-TTCCACAAACGCCGCAA-AGACCCTGA
* * * *
14616524 TCTATAGCGGCGCTTTCT-CACAAACGCCGCCAAAAACCATGA
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCG-CAAAGACCCTGA
* *
14616566 TCTTTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTTA
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCGC-AAAGACCCTGA
*
14616609 TCTTTAGCGGTGCTTT
1 TCTTTAGCGGCGCTTT
14616625 GACCAAAAAC
Statistics
Matches: 117, Mismatches: 19, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
42 38 0.32
43 75 0.64
44 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (42 bp):
TCTTTAGCGGCGCTTTTTCCACAAACGCCGCAAAGACCCTGA
Found at i:14616635 original size:43 final size:41
Alignment explanation
Indices: 14616460--14616643 Score: 149
Period size: 43 Copynumber: 4.3 Consensus size: 41
14616450 TTTTTATCTA
* *
14616460 AAACGCCGC-AATAGACCCTGAT-TTATAGCGGCGTTTATACCTC
1 AAACGCCGCTAA-AGACCCTGATCTT-TAGCGGCGCTT-T-CCAC
* *
14616503 AAACGCCGC-AATAGACTCTGATCTATAGCGGCGCTTTCTCAC
1 AAACGCCGCTAA-AGACCCTGATCTTTAGCGGCGCTTTC-CAC
* * * *
14616545 AAACGCCGCCAAAAACCATGATCTTTAGTGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGACCCTGATCTTTAGCGGCGC--TTTCCAC
* * *
14616588 AAACGCCGCTAAAGACCCTTATCTTTAGCGGTGCTTTGACCAA
1 AAACGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTT--CCAC
*
14616631 AAACGCCACTAAA
1 AAACGCCGCTAAA
14616644 AAGGCCAACA
Statistics
Matches: 117, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
41 4 0.03
42 29 0.25
43 79 0.68
44 5 0.04
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (41 bp):
AAACGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTCCAC
Found at i:14617295 original size:43 final size:42
Alignment explanation
Indices: 14617121--14617307 Score: 175
Period size: 43 Copynumber: 4.4 Consensus size: 42
14617111 AAGATCAGGG
* *
14617121 TCTTTAGCGGCGTTTTTATCTA-AAACGCCGCAATAGACCCTGA
1 TCTTTAGCGGCGCTTTT-TCCACAAACGCCGCAA-AGACCCTGA
* * *
14617164 T-TTATAGCGGCG-TTTATACCTCAAACGCCGCAATAGACTCTGA
1 TCTT-TAGCGGCGCTTT-TTCCACAAACGCCGCAA-AGACCCTGA
* * * *
14617207 TCTATAGCGGCGCTTTCT-CACAAACGCCGCCAAAAACCATGA
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCG-CAAAGACCCTGA
* *
14617249 TCTTTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTTA
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCGC-AAAGACCCTGA
*
14617292 TCTTTAGCGGTGCTTT
1 TCTTTAGCGGCGCTTT
14617308 GACCAAAAAC
Statistics
Matches: 117, Mismatches: 19, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
42 38 0.32
43 75 0.64
44 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (42 bp):
TCTTTAGCGGCGCTTTTTCCACAAACGCCGCAAAGACCCTGA
Found at i:14617318 original size:43 final size:41
Alignment explanation
Indices: 14617143--14617326 Score: 149
Period size: 43 Copynumber: 4.3 Consensus size: 41
14617133 TTTTTATCTA
* *
14617143 AAACGCCGC-AATAGACCCTGAT-TTATAGCGGCGTTTATACCTC
1 AAACGCCGCTAA-AGACCCTGATCTT-TAGCGGCGCTT-T-CCAC
* *
14617186 AAACGCCGC-AATAGACTCTGATCTATAGCGGCGCTTTCTCAC
1 AAACGCCGCTAA-AGACCCTGATCTTTAGCGGCGCTTTC-CAC
* * * *
14617228 AAACGCCGCCAAAAACCATGATCTTTAGTGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGACCCTGATCTTTAGCGGCGC--TTTCCAC
* * *
14617271 AAACGCCGCTAAAGACCCTTATCTTTAGCGGTGCTTTGACCAA
1 AAACGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTT--CCAC
*
14617314 AAACGCCACTAAA
1 AAACGCCGCTAAA
14617327 AAGGCCAACA
Statistics
Matches: 117, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
41 4 0.03
42 29 0.25
43 79 0.68
44 5 0.04
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (41 bp):
AAACGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTCCAC
Found at i:14617620 original size:683 final size:684
Alignment explanation
Indices: 14616309--14617683 Score: 2743
Period size: 683 Copynumber: 2.0 Consensus size: 684
14616299 TGCACCGCTA
14616309 ACTTTAGCGGCGTTTTTAGAAATAAACGCCGCTAAAGGTGTTGGTCTATAGCGGCGCTACTGGCA
1 ACTTTAGCGGCGTTTTTAGAAATAAACGCCGCTAAAGGTGTTGGTCTATAGCGGCGCTACTGGCA
14616374 CAAACGCCGCTGAAGAGTAAGACCTTTAGCGGTACTTTAGTGGAAGCGCCGCTAAAGATCAGGGT
66 CAAACGCCGCTGAAGAGTAAGACCTTTAGCGGTACTTTAGTGGAAGCGCCGCTAAAGATCAGGGT
14616439 CTTTAGCGGCGTTTTTATCTAAAACGCCGCAATAGACCCTGATTTATAGCGGCGTTTATACCTCA
131 CTTTAGCGGCGTTTTTATCTAAAACGCCGCAATAGACCCTGATTTATAGCGGCGTTTATACCTCA
14616504 AACGCCGCAATAGACTCTGATCTATAGCGGCGCTTTCTCACAAACGCCGCCAAAAACCATGATCT
196 AACGCCGCAATAGACTCTGATCTATAGCGGCGCTTTCTCACAAACGCCGCCAAAAACCATGATCT
14616569 TTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTTATCTTTAGCGGTGCTTTGACCAAAAA
261 TTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTTATCTTTAGCGGTGCTTTGACCAAAAA
14616634 CGCCACTAAAAAGGCCAACAAAAAAAACGCCACTAAATTTGGCAGATTTGTAAAATAAAATTTTT
326 CGCCACTAAAAAGGCCAACAAAAAAAACGCCACTAAATTTGGCAGATTTGTAAAATAAAATTTTT
14616699 TATATTTTTGCAGCCCTCCTGTAAAAACAAATCAGAAGAAATCATATCTAAACCAGCCAAAAGAA
391 TATATTTTTGCAGCCCTCCTGTAAAAACAAATCAGAAGAAATCATATCTAAACCAGCCAAAAGAA
14616764 ATAAATCTATATATTAAAGAAATAATATAATAAATATCAATAAATAAAATAAAATTCGTATTATT
456 ATAAATCTATATATTAAAGAAATAATATAATAAATATCAATAAATAAAATAAAATTCGTATTATT
14616829 CTTACAAAAATGTTAAAAGTTAAAATGATAATTAAAAGTCAAAATCGAAGTATATTTACACGATA
521 CTTACAAAAATGTTAAAAGTTAAAATGATAATTAAAAGTCAAAATCGAAGTATATTTACACGATA
14616894 GTCTAAGACGGCGGCTGTTGCGACTGCTGAAACATCTTCATCATACTCTGAAGCTGCTGCTGGAG
586 GTCTAAGACGGCGGCTGTTGCGACTGCTGAAACATCTTCATCATACTCTGAAGCTGCTGCTGGAG
14616959 TTCATCGAACTTTTGACGCTACTCTGCTTCCCTC
651 TTCATCGAACTTTTGACGCTACTCTGCTTCCCTC
14616993 ACTTT-GCGGCGTTTTTAGAAATAAACGCCGCTAAAGGTGTTGGTCTATAGCGGCGCTACTGGCA
1 ACTTTAGCGGCGTTTTTAGAAATAAACGCCGCTAAAGGTGTTGGTCTATAGCGGCGCTACTGGCA
14617057 CAAACGCCGCTGAAGAGTAAGACCTTTAGCGGTACTTTAGTGGAAGCGCCGCTAAAGATCAGGGT
66 CAAACGCCGCTGAAGAGTAAGACCTTTAGCGGTACTTTAGTGGAAGCGCCGCTAAAGATCAGGGT
14617122 CTTTAGCGGCGTTTTTATCTAAAACGCCGCAATAGACCCTGATTTATAGCGGCGTTTATACCTCA
131 CTTTAGCGGCGTTTTTATCTAAAACGCCGCAATAGACCCTGATTTATAGCGGCGTTTATACCTCA
14617187 AACGCCGCAATAGACTCTGATCTATAGCGGCGCTTTCTCACAAACGCCGCCAAAAACCATGATCT
196 AACGCCGCAATAGACTCTGATCTATAGCGGCGCTTTCTCACAAACGCCGCCAAAAACCATGATCT
14617252 TTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTTATCTTTAGCGGTGCTTTGACCAAAAA
261 TTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTTATCTTTAGCGGTGCTTTGACCAAAAA
14617317 CGCCACTAAAAAGGCCAACAAAAAAAACGCCACTAAATTTGGCAGATTTGTAAAATAAAATTTTT
326 CGCCACTAAAAAGGCCAACAAAAAAAACGCCACTAAATTTGGCAGATTTGTAAAATAAAATTTTT
14617382 TATATTTTTGCAGCCCTCCTGTAAAAACAAATCAGAAGAAATCATATCTAAACCAGCCAAAAGAA
391 TATATTTTTGCAGCCCTCCTGTAAAAACAAATCAGAAGAAATCATATCTAAACCAGCCAAAAGAA
14617447 ATAAATCTATATATTAAAGAAATAATATAATAAATATCAATAAATAAAATAAAATTCGTATTATT
456 ATAAATCTATATATTAAAGAAATAATATAATAAATATCAATAAATAAAATAAAATTCGTATTATT
14617512 CTTACAAAAATGTTAAAAGTTAAAATGATAATTAAAAGTCAAAATCGAAGTATATTTACACGATA
521 CTTACAAAAATGTTAAAAGTTAAAATGATAATTAAAAGTCAAAATCGAAGTATATTTACACGATA
14617577 GTCTAAGACGGCGGCTGTTGCGACTGCTGAAACATCTTCATCATACTCTGAAGCTGCTGCTGGAG
586 GTCTAAGACGGCGGCTGTTGCGACTGCTGAAACATCTTCATCATACTCTGAAGCTGCTGCTGGAG
14617642 TTCATCGAACTTTTGACGCTACTCTGCTTCCCTC
651 TTCATCGAACTTTTGACGCTACTCTGCTTCCCTC
14617676 ACTTTAGC
1 ACTTTAGC
14617684 CTCTGCTTCC
Statistics
Matches: 690, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
683 683 0.99
684 7 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.27
Consensus pattern (684 bp):
ACTTTAGCGGCGTTTTTAGAAATAAACGCCGCTAAAGGTGTTGGTCTATAGCGGCGCTACTGGCA
CAAACGCCGCTGAAGAGTAAGACCTTTAGCGGTACTTTAGTGGAAGCGCCGCTAAAGATCAGGGT
CTTTAGCGGCGTTTTTATCTAAAACGCCGCAATAGACCCTGATTTATAGCGGCGTTTATACCTCA
AACGCCGCAATAGACTCTGATCTATAGCGGCGCTTTCTCACAAACGCCGCCAAAAACCATGATCT
TTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTTATCTTTAGCGGTGCTTTGACCAAAAA
CGCCACTAAAAAGGCCAACAAAAAAAACGCCACTAAATTTGGCAGATTTGTAAAATAAAATTTTT
TATATTTTTGCAGCCCTCCTGTAAAAACAAATCAGAAGAAATCATATCTAAACCAGCCAAAAGAA
ATAAATCTATATATTAAAGAAATAATATAATAAATATCAATAAATAAAATAAAATTCGTATTATT
CTTACAAAAATGTTAAAAGTTAAAATGATAATTAAAAGTCAAAATCGAAGTATATTTACACGATA
GTCTAAGACGGCGGCTGTTGCGACTGCTGAAACATCTTCATCATACTCTGAAGCTGCTGCTGGAG
TTCATCGAACTTTTGACGCTACTCTGCTTCCCTC
Found at i:14617718 original size:21 final size:21
Alignment explanation
Indices: 14617663--14617720 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
14617653 TTTGACGCTA
*
14617663 CTCTGCTTCCCTCACTTTAGC
1 CTCTGCTTCCCTCGCTTTAGC
14617684 CTCTGCTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTTTAGC
14617705 CTCTGCTTCCCTCGCT
1 CTCTGCTTCCCTCGCT
14617721 GCAGCCTGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.05, C:0.45, G:0.12, T:0.38
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTTTAGC
Found at i:14617726 original size:21 final size:21
Alignment explanation
Indices: 14617663--14617775 Score: 100
Period size: 21 Copynumber: 5.4 Consensus size: 21
14617653 TTTGACGCTA
* **
14617663 CTCTGCTTCCCTCACTTTAGC
1 CTCTGCTTCCCTCGCTGCAGC
**
14617684 CTCTGCTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGCAGC
14617705 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * *
14617726 CTGTACTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * *
14617747 CTTTGCTTCTCTTGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
*
14617768 ATCTGCTT
1 CTCTGCTT
14617776 TAAGCTGCTG
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 80 1.00
ACGTcount: A:0.05, C:0.42, G:0.16, T:0.37
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:14617914 original size:66 final size:65
Alignment explanation
Indices: 14617751--14617917 Score: 210
Period size: 66 Copynumber: 2.5 Consensus size: 65
14617741 TGCCGCCTTT
* * * *
14617751 GCTTCTCTTGCTGCCGCATCTGCTTTAAGCTGCTGTTGGAGTTCTTCATACTTTCGTTGAACCTC
1 GCTTCTCTCGATGCTGCATCTGCTTTAAGTTG-TGTTGGAGTTCTTCATACTTTCGTTGAACCTC
14617816 A
65 A
* * * *
14617817 GCTTCTCTCGCTGCTGTATCTGCTTTCAGTTGTAGTTGGAGTTCTTCATATCTTT-TTTGAACCT
1 GCTTCTCTCGATGCTGCATCTGCTTTAAGTTGT-GTTGGAGTTCTTCATA-CTTTCGTTGAACCT
14617881 CA
64 CA
* *
14617883 GCTTCTCTCGATGTTGCATCCGCTTTAAGTTGTGT
1 GCTTCTCTCGATGCTGCATCTGCTTTAAGTTGTGT
14617918 AATTTGCTCA
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
65 3 0.03
66 81 0.92
67 4 0.05
ACGTcount: A:0.13, C:0.25, G:0.20, T:0.43
Consensus pattern (65 bp):
GCTTCTCTCGATGCTGCATCTGCTTTAAGTTGTGTTGGAGTTCTTCATACTTTCGTTGAACCTCA
Found at i:14632143 original size:41 final size:41
Alignment explanation
Indices: 14632081--14632277 Score: 259
Period size: 41 Copynumber: 4.8 Consensus size: 41
14632071 NNNNNNNNNN
* * *
14632081 ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGACCCGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCGGAGC
* * * *
14632122 ATTAGCGGCGCATAGAAAAAAATGCCGCTAAAGATCTGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCGGAGC
* * * *
14632163 ATTAGCGGCGCTTAGACGAAATCACCGCTAAAGATCGGGGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCGGAGC
** *
14632204 ATTAGCGGCGCTTTCACAAAAACGCCGCGAAAGATCGGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCGGAGC
*
14632245 ATTAGCGGCGCTTACACAAAAACGCCGCTAAAG
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAG
14632278 GTTTAAAAAA
Statistics
Matches: 135, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 135 1.00
ACGTcount: A:0.35, C:0.25, G:0.25, T:0.15
Consensus pattern (41 bp):
ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCGGAGC
Found at i:14632425 original size:40 final size:40
Alignment explanation
Indices: 14632357--14632432 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
14632347 AATTCCTATT
* *
14632357 TTTAGCGGCGCTTCCGGATAATCGCCGCTGATGCTCTACC
1 TTTAGCGGCGCTTCCGGATAATCACCGCTAATGCTCTACC
* *
14632397 TTTAGCGGCGCTT-TGGCTAAATCACCGCTAATGCTC
1 TTTAGCGGCGCTTCCGGAT-AATCACCGCTAATGCTC
14632433 GATTTTTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.10
40 28 0.90
ACGTcount: A:0.17, C:0.30, G:0.24, T:0.29
Consensus pattern (40 bp):
TTTAGCGGCGCTTCCGGATAATCACCGCTAATGCTCTACC
Found at i:14635773 original size:30 final size:30
Alignment explanation
Indices: 14635737--14635801 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
14635727 AATAGTTTAT
** *
14635737 ATTTTTATAATATTTAAATGATTAAATTA-A
1 ATTTTTATAAT-TTTAAAAAATTAAAATACA
*
14635767 ATTTTTATCATTTTAAAAAATTAAAATACA
1 ATTTTTATAATTTTAAAAAATTAAAATACA
14635797 ATTTT
1 ATTTT
14635802 ATCATTTCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 14 0.47
30 16 0.53
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (30 bp):
ATTTTTATAATTTTAAAAAATTAAAATACA
Found at i:14636460 original size:114 final size:115
Alignment explanation
Indices: 14636251--14636534 Score: 319
Period size: 114 Copynumber: 2.5 Consensus size: 115
14636241 AATATGCAAG
* * * * * *
14636251 AAACTGTTAAGAAAACGCTACCG-TTTTCAGTTTAGGTTTTGGGGACTTTAGTGGCGCTTACTGG
1 AAACTGTTAAGAAAACGTTGCCGTTTTTCAGTTTAGGTTTTAGAGACGTTAGTGGCGATTACTGG
* * *
14636315 AAAACGCCGCTATAGTCAAGAATTAGCGGCGCTTTATCATAAGCGCCGCA
66 AAAACGCCGCTATAGTCAAGAATTAGCGGCGCTTTATCAGAAGCGACACA
* ** * **
14636365 AAACTATTAAGAAAACGTTGCCGTTTTTCA-TTTATCTTTTCGAGACGTTAGTGGCGATTTTTGG
1 AAACTGTTAAGAAAACGTTGCCGTTTTTCAGTTTAGGTTTTAGAGACGTTAGTGGCGATTACTGG
** * *
14636429 AAAACGCCGC-AGTAG-CGAAGCTTTAGTGGCGCTTTATTAGAAGCGACACA
66 AAAACGCCGCTA-TAGTC-AAGAATTAGCGGCGCTTTATCAGAAGCGACACA
*
14636479 AAACTGTTAAGAAAAC-TATGTCGTTTTT-AGTTTAGGTTTTAGAGACGTTAGTGGCG
1 AAACTGTTAAGAAAACGT-TGCCGTTTTTCAGTTTAGGTTTTAGAGACGTTAGTGGCG
14636535 CTTGTCTAAA
Statistics
Matches: 142, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
113 4 0.03
114 132 0.93
115 6 0.04
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (115 bp):
AAACTGTTAAGAAAACGTTGCCGTTTTTCAGTTTAGGTTTTAGAGACGTTAGTGGCGATTACTGG
AAAACGCCGCTATAGTCAAGAATTAGCGGCGCTTTATCAGAAGCGACACA
Found at i:14637242 original size:28 final size:28
Alignment explanation
Indices: 14637209--14637270 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
14637199 TTATGGATAT
* *
14637209 GGTTTAAGGATT-GGGGTTAAGGGTTAAG
1 GGTTTAAGGATTAAGGGCT-AGGGTTAAG
*
14637237 GGTTTAAGGGTTAAGGGCTAGGGTTAAG
1 GGTTTAAGGATTAAGGGCTAGGGTTAAG
14637265 GGTTTA
1 GGTTTA
14637271 GGGGTTTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 26 0.87
29 4 0.13
ACGTcount: A:0.24, C:0.02, G:0.42, T:0.32
Consensus pattern (28 bp):
GGTTTAAGGATTAAGGGCTAGGGTTAAG
Found at i:14637245 original size:8 final size:7
Alignment explanation
Indices: 14637222--14637273 Score: 70
Period size: 7 Copynumber: 7.4 Consensus size: 7
14637212 TTAAGGATTG
14637222 GGGTTAA
1 GGGTTAA
14637229 GGGTTAA
1 GGGTTAA
14637236 GGGTTTAA
1 GGG-TTAA
14637244 GGGTTAA
1 GGGTTAA
*
14637251 GGGCT-A
1 GGGTTAA
14637257 GGGTTAA
1 GGGTTAA
*
14637264 GGGTTTA
1 GGGTTAA
14637271 GGG
1 GGG
14637274 GTTTATAGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
6 5 0.12
7 28 0.70
8 7 0.17
ACGTcount: A:0.23, C:0.02, G:0.46, T:0.29
Consensus pattern (7 bp):
GGGTTAA
Found at i:14637486 original size:15 final size:16
Alignment explanation
Indices: 14637466--14637512 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 16
14637456 TTAAGGGTTG
14637466 GGGTTAAGGGTTTAT-
1 GGGTTAAGGGTTTATA
14637481 GGGTTAAGGG-TTATA
1 GGGTTAAGGGTTTATA
* *
14637496 GGTTTAGGGGTTTATA
1 GGGTTAAGGGTTTATA
14637512 G
1 G
14637513 TTAATGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 4 0.14
15 18 0.64
16 6 0.21
ACGTcount: A:0.21, C:0.00, G:0.40, T:0.38
Consensus pattern (16 bp):
GGGTTAAGGGTTTATA
Found at i:14637639 original size:135 final size:135
Alignment explanation
Indices: 14637363--14637619 Score: 471
Period size: 135 Copynumber: 1.9 Consensus size: 135
14637353 AAGTTTTGGA
14637363 TTTAGGGGTTTATAGTTAATGTTTTACAATTCAATATGTTTAGGGGATATGGGTTAAGGGTTTAG
1 TTTAGGGGTTTATAGTTAATGTTTTACAATTCAATATGTTTAGGGGATATGGGTTAAGGGTTTAG
* *
14637428 GCATTATAGTTAATTTGTGGTTTACGGTTTAAGGGTTGGGGTTAAGGGTTTATGGGTTAAGGGTT
66 GCATTATAGTTAATTTGTGGTTTACGGTTTAAGGGTTGGGGCTAAGGGTTTAGGGGTTAAGGGTT
14637493 ATAGG
131 ATAGG
*
14637498 TTTAGGGGTTTATAGTTAATGTTTTACGATTCAATATGTTTAGGGGATATGGGTTAAGGGTTTAG
1 TTTAGGGGTTTATAGTTAATGTTTTACAATTCAATATGTTTAGGGGATATGGGTTAAGGGTTTAG
14637563 GCATTATAGTTAATTTGTGGTTTACGGTTTAAGGGTTGGGGCCT-AGGGTTTAGGGGT
66 GCATTATAGTTAATTTGTGGTTTACGGTTTAAGGGTTGGGG-CTAAGGGTTTAGGGGT
14637620 CTACGGTTTA
Statistics
Matches: 118, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
135 117 0.99
136 1 0.01
ACGTcount: A:0.23, C:0.04, G:0.32, T:0.41
Consensus pattern (135 bp):
TTTAGGGGTTTATAGTTAATGTTTTACAATTCAATATGTTTAGGGGATATGGGTTAAGGGTTTAG
GCATTATAGTTAATTTGTGGTTTACGGTTTAAGGGTTGGGGCTAAGGGTTTAGGGGTTAAGGGTT
ATAGG
Found at i:14639370 original size:27 final size:29
Alignment explanation
Indices: 14639316--14639371 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
14639306 ATTTAATTTA
* *
14639316 TATTAAGTTGATTGTTACTTTATCAATTAT
1 TATTAAGTTGATTGTTA-GTGATCAATTAT
14639346 TATTAAGTTGATTGTT-GTGAT-AATTA
1 TATTAAGTTGATTGTTAGTGATCAATTA
14639372 AAATTGATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 5 0.21
28 3 0.12
30 16 0.67
ACGTcount: A:0.30, C:0.04, G:0.14, T:0.52
Consensus pattern (29 bp):
TATTAAGTTGATTGTTAGTGATCAATTAT
Found at i:14639615 original size:177 final size:177
Alignment explanation
Indices: 14639292--14639616 Score: 539
Period size: 177 Copynumber: 1.8 Consensus size: 177
14639282 ATATTTGTTT
14639292 AATTTAAGTTTCTGATTTAATTTATATTAAGTTGATTGTTACTTTATCAATTATTATTAAGTTGA
1 AATTTAAGTTTCTGATTTAATTTATATTAAGTTGATTGTTACTTTATCAATTATTATTAAGTTGA
*
14639357 TTGTTGTGATAATTAAAATTGATACATTGATTTGAATATAAATGTAGTTAAATAATCTTCTGCTT
66 TTGTTGTGATAATTAAAATTGATACATTGATTTGAATATAAATGTACTTAAATAATCTTCTGCTT
**
14639422 ACTTTTGTTGTATTTTTTCCTATTTTTTGGTACTAAGTTAGTTTATC
131 ACTTTTGTCCTATTTTTTCCTATTTTTTGGTACTAAGTTAGTTTATC
14639469 AATTTAAGATTT-TGATTTAATTTATATTAAGTTGATTGTTACTTTATCAATTCA-TATTAAGTT
1 AATTTAAG-TTTCTGATTTAATTTATATTAAGTTGATTGTTACTTTATCAATT-ATTATTAAGTT
* * * *
14639532 GATTGTTGTGATAATTAAGATTGTTACATTGATTTGAATCTAAATGTACTTAAATAATCTTCTGT
64 GATTGTTGTGATAATTAAAATTGATACATTGATTTGAATATAAATGTACTTAAATAATCTTCTGC
14639597 TTACTTCTT-TCCTATTTTTT
129 TTACTT-TTGTCCTATTTTTT
14639617 TTAGTACTAA
Statistics
Matches: 138, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
177 132 0.96
178 6 0.04
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.51
Consensus pattern (177 bp):
AATTTAAGTTTCTGATTTAATTTATATTAAGTTGATTGTTACTTTATCAATTATTATTAAGTTGA
TTGTTGTGATAATTAAAATTGATACATTGATTTGAATATAAATGTACTTAAATAATCTTCTGCTT
ACTTTTGTCCTATTTTTTCCTATTTTTTGGTACTAAGTTAGTTTATC
Found at i:14640315 original size:20 final size:21
Alignment explanation
Indices: 14640272--14640313 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
14640262 TTTAAAAATA
14640272 TATATATTTTTAAAATATGATT
1 TATATATTTTTAAAATAT-ATT
14640294 TATATA-TTTT-AAATATATT
1 TATATATTTTTAAAATATATT
14640313 T
1 T
14640314 TAAAAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 4 0.20
20 6 0.30
21 4 0.20
22 6 0.30
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
TATATATTTTTAAAATATATT
Found at i:14640343 original size:33 final size:34
Alignment explanation
Indices: 14640271--14640356 Score: 97
Period size: 33 Copynumber: 2.6 Consensus size: 34
14640261 ATTTAAAAAT
* * *
14640271 ATATATATTTTTAAAATATGATTTATATATTTTA
1 ATATATATTTTTAAAATTTAATTTATATATATTA
*
14640305 A-ATATATTTTAAAAATTTAATTTA-ACT-TATTA
1 ATATATATTTTTAAAATTTAATTTATA-TATATTA
*
14640337 ATATATATTTTTGAAATTTA
1 ATATATATTTTTAAAATTTA
14640357 TAACTTACAT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
32 6 0.14
33 37 0.84
34 1 0.02
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.53
Consensus pattern (34 bp):
ATATATATTTTTAAAATTTAATTTATATATATTA
Found at i:14640562 original size:40 final size:40
Alignment explanation
Indices: 14640505--14640581 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
14640495 TATATTTTTA
14640505 AAAATTGATACAATACATAACTTGCATAACCTACATACAT
1 AAAATTGATACAATACATAACTTGCATAACCTACATACAT
*
14640545 AAAATTGATACATTACATAACTTGCATAACCTACATA
1 AAAATTGATACAATACATAACTTGCATAACCTACATA
14640582 AAATTAAGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.47, C:0.19, G:0.05, T:0.29
Consensus pattern (40 bp):
AAAATTGATACAATACATAACTTGCATAACCTACATACAT
Found at i:14640602 original size:20 final size:20
Alignment explanation
Indices: 14640579--14640617 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
14640569 CATAACCTAC
14640579 ATAAAATTAAGATAACTTAT
1 ATAAAATTAAGATAACTTAT
*
14640599 ATAATATTAAGATAACTTA
1 ATAAAATTAAGATAACTTA
14640618 CATTCTACAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (20 bp):
ATAAAATTAAGATAACTTAT
Found at i:14640644 original size:25 final size:25
Alignment explanation
Indices: 14640623--14640688 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 25
14640613 ACTTACATTC
14640623 TACAGAACTTACATAACATACATAA
1 TACAGAACTTACATAACATACATAA
*
14640648 TACATAACTTACATAAC-TAACATAA
1 TACAGAACTTACATAACAT-ACATAA
* *
14640673 TACATAGCTTACATAA
1 TACAGAACTTACATAA
14640689 TACTCAACTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 1 0.03
25 37 0.97
ACGTcount: A:0.50, C:0.20, G:0.03, T:0.27
Consensus pattern (25 bp):
TACAGAACTTACATAACATACATAA
Found at i:14640677 original size:41 final size:41
Alignment explanation
Indices: 14640632--14640744 Score: 129
Period size: 41 Copynumber: 2.8 Consensus size: 41
14640622 CTACAGAACT
*
14640632 TACATAACATACATAATACATAACTTACATAACTAACATAA
1 TACATAACTTACATAATACATAACTTACATAACTAACATAA
* * * *
14640673 TACATAGCTTACATAATAC-TCAACTTACTTAGCTTACATAA
1 TACATAACTTACATAATACAT-AACTTACATAACTAACATAA
* * * *
14640714 TAAATAACTTACATAAAATACAACTTACATA
1 TACATAACTTACATAATACATAACTTACATA
14640745 TAGCTTACAT
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
40 1 0.02
41 58 0.98
ACGTcount: A:0.49, C:0.19, G:0.02, T:0.30
Consensus pattern (41 bp):
TACATAACTTACATAATACATAACTTACATAACTAACATAA
Found at i:14640699 original size:16 final size:16
Alignment explanation
Indices: 14640610--14640700 Score: 71
Period size: 16 Copynumber: 5.6 Consensus size: 16
14640600 TAATATTAAG
**
14640610 ATAACTTACATTCTAC
1 ATAACTTACATAATAC
*
14640626 AGAACTTACATAACATAC
1 ATAACTTACAT-A-ATAC
14640644 ATAA--TACATAACTTAC
1 ATAACTTACATAA--TAC
*
14640660 ATAACTAACATAATAC
1 ATAACTTACATAATAC
*
14640676 ATAGCTTACATAATAC
1 ATAACTTACATAATAC
14640692 -TCAACTTAC
1 AT-AACTTAC
14640701 TTAGCTTACA
Statistics
Matches: 60, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
14 1 0.02
15 2 0.03
16 45 0.75
18 12 0.20
ACGTcount: A:0.46, C:0.22, G:0.02, T:0.30
Consensus pattern (16 bp):
ATAACTTACATAATAC
Found at i:14640722 original size:25 final size:25
Alignment explanation
Indices: 14640648--14640728 Score: 87
Period size: 25 Copynumber: 3.2 Consensus size: 25
14640638 ACATACATAA
*
14640648 TACATAACTTACATAACTAACATAA--
1 TACATAGCTTACATAA-TAA-ATAACT
*
14640673 TACATAGCTTACATAAT-ACTCAACT
1 TACATAGCTTACATAATAAAT-AACT
*
14640698 TACTTAGCTTACATAATAAATAACT
1 TACATAGCTTACATAATAAATAACT
14640723 TACATA
1 TACATA
14640729 AAATACAACT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
22 1 0.02
23 3 0.06
24 1 0.02
25 40 0.85
26 2 0.04
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (25 bp):
TACATAGCTTACATAATAAATAACT
Found at i:14640726 original size:16 final size:16
Alignment explanation
Indices: 14640705--14640744 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
14640695 ACTTACTTAG
*
14640705 CTTACATAATAA-ATAA
1 CTTACATAA-AATACAA
14640721 CTTACATAAAATACAA
1 CTTACATAAAATACAA
14640737 CTTACATA
1 CTTACATA
14640745 TAGCTTACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 2 0.09
16 20 0.91
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (16 bp):
CTTACATAAAATACAA
Found at i:14640806 original size:16 final size:15
Alignment explanation
Indices: 14640773--14640816 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
14640763 ATTTACGTAG
*
14640773 CTTACATAATAAATAA
1 CTTACATAA-AAACAA
14640789 CTTACATAAAATACAA
1 CTTACATAAAA-ACAA
*
14640805 CTAACATAAAAA
1 CTTACATAAAAA
14640817 AGTGAACAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 22 0.88
ACGTcount: A:0.59, C:0.16, G:0.00, T:0.25
Consensus pattern (15 bp):
CTTACATAAAAACAA
Found at i:14646101 original size:21 final size:21
Alignment explanation
Indices: 14646071--14646138 Score: 109
Period size: 21 Copynumber: 3.2 Consensus size: 21
14646061 CTGCAACTTA
* *
14646071 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGAG
*
14646092 AAGTAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGAG
14646113 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGAG
14646134 AAGCA
1 AAGCA
14646139 TCGAGAGAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.34, C:0.18, G:0.44, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGAG
Found at i:14646697 original size:85 final size:84
Alignment explanation
Indices: 14646587--14646961 Score: 470
Period size: 85 Copynumber: 4.4 Consensus size: 84
14646577 TTTGTCAAGA
* * * *
14646587 AAGCGCCGCCAAAGAACATTACTTTTCGCGGCGTTTGAGATAAAAAGTGCCGCTAAAGAACATGA
1 AAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTGTGAT-AAAAGCGCCGCTAAAGAACATGA
*
14646652 TCTTTAGTGGCGTCTTTTCT
65 TCTTTAGCGGCGTCTTTTCT
* *
14646672 AAGTGCCGCTAAAGAACATTACTTTTCGCGGCGTTTGTGATAAAAGCGCCGCTAAA-ATACATGA
1 AAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGA-ACATGA
* * *
14646736 TCTTTAGCGGCATTTTTTACA
65 TCTTTAGCGGCGTCTTTT-CT
* * * *
14646757 AAGCGCCGCTAAAAAACATTA-TCTTTAGCGGCGTTTTTCG-T-TAAGCGCCACTAAAGAACATG
1 AAGCGCCGCTAAAGAACATTACT-TTTAGCGGCGTTTGT-GATAAAAGCGCCGCTAAAGAACATG
* *
14646819 ATCTTTAACGGCGTCTTTTTTT
64 ATCTTTAGCGGCGTC-TTTTCT
* *
14646841 AAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTGTGATAATAGCACCGCTAAAGAACATGAT
1 AAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGAACATGAT
*
14646906 CTTTAGCGGCGTTTTTTTCT
66 CTTTAGCGGCG-TCTTTTCT
* *
14646926 ATGCGCCGCTAAAGAACATGACTTTTAGCGGCGTTT
1 AAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTT
14646962 TTTTCTGTAA
Statistics
Matches: 250, Mismatches: 30, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
83 2 0.01
84 100 0.40
85 146 0.58
86 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (84 bp):
AAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGAACATGAT
CTTTAGCGGCGTCTTTTCT
Found at i:14646769 original size:42 final size:42
Alignment explanation
Indices: 14646524--14646964 Score: 324
Period size: 42 Copynumber: 10.4 Consensus size: 42
14646514 AATCCCAAAA
* *** *
14646524 TTAGTGGCGTTTTTTTATACAAGCGCCGCTAAA-AGTTGTGTTCT
1 TTAGCGGCG-TTTTTTATA-AAGCGCCGCTAAAGA-ACATGATCT
* ** * * *
14646568 ATAGCGGCGTTTGTCAAGAAAGCGCCGCCAAAGAACATTA-CTT
1 TTAGCGGCGTTT-TTTATAAAGCGCCGCTAAAGAACATGATC-T
* ** * *
14646611 TTCGCGGCGTTTGAGATAAAAAGTGCCGCTAAAGAACATGATCT
1 TTAGCGGCGTTT--TTTATAAAGCGCCGCTAAAGAACATGATCT
* * * * *
14646655 TTAGTGGCGTCTTTTCT-AAGTGCCGCTAAAGAACATTA-CTT
1 TTAGCGGCGTTTTTTATAAAGCGCCGCTAAAGAACATGATC-T
* * *
14646696 TTCGCGGCGTTTGTGATAAAAGCGCCGCTAAA-ATACATGATCT
1 TTAGCGGCGTTTTTTAT-AAAGCGCCGCTAAAGA-ACATGATCT
* * * *
14646739 TTAGCGGCATTTTTTACAAAGCGCCGCTAAAAAACATTATCT
1 TTAGCGGCGTTTTTTATAAAGCGCCGCTAAAGAACATGATCT
** * *
14646781 TTAGCGGCGTTTTTCGTTAAGCGCCACTAAAGAACATGATCT
1 TTAGCGGCGTTTTTTATAAAGCGCCGCTAAAGAACATGATCT
* * *
14646823 TTAACGGCGTCTTTTT-TTAAGCGCCGCTAAAGAACATTA-CTT
1 TTAGCGGCGT-TTTTTATAAAGCGCCGCTAAAGAACATGATC-T
* * *
14646865 TTAGCGGCGTTTGTGATAATAGCACCGCTAAAGAACATGATCT
1 TTAGCGGCGTTTTTTATAA-AGCGCCGCTAAAGAACATGATCT
* *
14646908 TTAGCGGCGTTTTTT-TCTATGCGCCGCTAAAGAACATGA-CTT
1 TTAGCGGCGTTTTTTAT-AAAGCGCCGCTAAAGAACATGATC-T
14646950 TTAGCGGCGTTTTTT
1 TTAGCGGCGTTTTTT
14646965 TCTGTAAACG
Statistics
Matches: 313, Mismatches: 66, Indels: 38
0.75 0.16 0.09
Matches are distributed among these distances:
40 1 0.00
41 37 0.12
42 136 0.43
43 95 0.30
44 43 0.14
45 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (42 bp):
TTAGCGGCGTTTTTTATAAAGCGCCGCTAAAGAACATGATCT
Found at i:14646874 original size:169 final size:168
Alignment explanation
Indices: 14646639--14646963 Score: 492
Period size: 169 Copynumber: 1.9 Consensus size: 168
14646629 AAAAGTGCCG
** * *
14646639 CTAAAGAACATGATCTTTAGTGGCGTCTTTTCTAAGTGCCGCTAAAGAACATTACTTTTCGCGGC
1 CTAAAGAACATGATCTTTAACGGCGTCTTTTCTAAGCGCCGCTAAAGAACATTACTTTTAGCGGC
*
14646704 GTTTGTGATAAAAGCGCCGCTAAA-ATACATGATCTTTAGCGGCATTTTTTACAAAGCGCCGCTA
66 GTTTGTGATAAAAGCACCGCTAAAGA-ACATGATCTTTAGCGGCATTTTTTACAAAGCGCCGCTA
*
14646768 AAAAACATTA-TCTTTAGCGGCGTTTTTCGTTAAGCGCCA
130 AAAAACATGACT-TTTAGCGGCGTTTTTCGTTAAGCGCCA
*
14646807 CTAAAGAACATGATCTTTAACGGCGTCTTTTTTTAAGCGCCGCTAAAGAACATTACTTTTAGCGG
1 CTAAAGAACATGATCTTTAACGGCGTC-TTTTCTAAGCGCCGCTAAAGAACATTACTTTTAGCGG
* * * * *
14646872 CGTTTGTGATAATAGCACCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTATGCGCCGCTA
65 CGTTTGTGATAAAAGCACCGCTAAAGAACATGATCTTTAGCGGCATTTTTTACAAAGCGCCGCTA
*
14646937 AAGAACATGACTTTTAGCGGCGTTTTT
130 AAAAACATGACTTTTAGCGGCGTTTTT
14646964 TTCTGTAAAC
Statistics
Matches: 141, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
168 25 0.18
169 114 0.81
170 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (168 bp):
CTAAAGAACATGATCTTTAACGGCGTCTTTTCTAAGCGCCGCTAAAGAACATTACTTTTAGCGGC
GTTTGTGATAAAAGCACCGCTAAAGAACATGATCTTTAGCGGCATTTTTTACAAAGCGCCGCTAA
AAAACATGACTTTTAGCGGCGTTTTTCGTTAAGCGCCA
Found at i:14649573 original size:21 final size:22
Alignment explanation
Indices: 14649548--14649590 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
14649538 TTAATATATA
14649548 TATGT-ATATTTATTTTTTTCT
1 TATGTAATATTTATTTTTTTCT
14649569 TATGTACATATTTATTTTTTTC
1 TATGTA-ATATTTATTTTTTTC
14649591 AACTAATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 5 0.25
23 15 0.75
ACGTcount: A:0.21, C:0.07, G:0.05, T:0.67
Consensus pattern (22 bp):
TATGTAATATTTATTTTTTTCT
Found at i:14660508 original size:18 final size:18
Alignment explanation
Indices: 14660485--14660524 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
14660475 ACTAGTATAG
14660485 TATTCTTTGCAACATTTT
1 TATTCTTTGCAACATTTT
14660503 TATTCTTTGCAACATTTT
1 TATTCTTTGCAACATTTT
14660521 TATT
1 TATT
14660525 TACTTAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.23, C:0.15, G:0.05, T:0.57
Consensus pattern (18 bp):
TATTCTTTGCAACATTTT
Found at i:14661512 original size:13 final size:13
Alignment explanation
Indices: 14661494--14661609 Score: 105
Period size: 13 Copynumber: 9.1 Consensus size: 13
14661484 ATTTTTAATG
14661494 TAATATACTGTTT
1 TAATATACTGTTT
*
14661507 TAATATACTGTTA
1 TAATATACTGTTT
*
14661520 TAA-A-A-T-TTG
1 TAATATACTGTTT
*
14661529 TAATATACTATTT
1 TAATATACTGTTT
*
14661542 TAATGTACTGTTAT
1 TAATATACTGTT-T
* *
14661556 AAATATATTGTTT
1 TAATATACTGTTT
14661569 TAATATACTGTTT
1 TAATATACTGTTT
*
14661582 TAGTATACTGTTAT
1 TAATATACTGTT-T
* *
14661596 AAATATACTATTT
1 TAATATACTGTTT
14661609 T
1 T
14661610 TATAATGTTA
Statistics
Matches: 82, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
9 5 0.06
10 2 0.02
11 2 0.02
12 2 0.02
13 51 0.62
14 20 0.24
ACGTcount: A:0.35, C:0.06, G:0.08, T:0.51
Consensus pattern (13 bp):
TAATATACTGTTT
Found at i:14661591 original size:40 final size:37
Alignment explanation
Indices: 14661492--14661602 Score: 154
Period size: 40 Copynumber: 3.0 Consensus size: 37
14661482 TAATTTTTAA
14661492 TGTAATATACTGTTTTAATATACTGTTATAAA-AT-T
1 TGTAATATACTGTTTTAATATACTGTTATAAATATAT
* *
14661527 TGTAATATACTATTTTAATGTACTGTTATAAATATAT
1 TGTAATATACTGTTTTAATATACTGTTATAAATATAT
*
14661564 TGTTTTAATATACTGTTTTAGTATACTGTTATAAATATA
1 TG---TAATATACTGTTTTAATATACTGTTATAAATATA
14661603 CTATTTTTAT
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
35 30 0.45
36 2 0.03
37 3 0.05
40 31 0.47
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50
Consensus pattern (37 bp):
TGTAATATACTGTTTTAATATACTGTTATAAATATAT
Found at i:14661600 original size:27 final size:26
Alignment explanation
Indices: 14661494--14661609 Score: 105
Period size: 27 Copynumber: 4.5 Consensus size: 26
14661484 ATTTTTAATG
*
14661494 TAATATACTGTTTTAATATACTGTTA
1 TAATATACTGTTTTAATATACTGTTT
* *
14661520 TAA-A-A-T-TTGTAATATACTATTT
1 TAATATACTGTTTTAATATACTGTTT
* * *
14661542 TAATGTACTGTTATAAATATATTGTTT
1 TAATATACTGTT-TTAATATACTGTTT
*
14661569 TAATATACTGTTTTAGTATACTGTTAT
1 TAATATACTGTTTTAATATACTGTT-T
* *
14661596 AAATATACTATTTT
1 TAATATACTGTTTT
14661610 TATAATGTTA
Statistics
Matches: 70, Mismatches: 14, Indels: 11
0.74 0.15 0.12
Matches are distributed among these distances:
22 16 0.23
23 1 0.01
24 2 0.03
25 2 0.03
26 15 0.21
27 34 0.49
ACGTcount: A:0.35, C:0.06, G:0.08, T:0.51
Consensus pattern (26 bp):
TAATATACTGTTTTAATATACTGTTT
Found at i:14661619 original size:25 final size:26
Alignment explanation
Indices: 14661570--14661620 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
14661560 ATATTGTTTT
* *
14661570 AATATACTGTTTTAGTATACTGTTATA
1 AATATACTATTTTA-TATAATGTTATA
14661597 AATATACTATTTT-TATAATGTTAT
1 AATATACTATTTTATATAATGTTAT
14661621 TAACCAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 10 0.45
27 12 0.55
ACGTcount: A:0.35, C:0.06, G:0.08, T:0.51
Consensus pattern (26 bp):
AATATACTATTTTATATAATGTTATA
Found at i:14663675 original size:123 final size:125
Alignment explanation
Indices: 14663420--14663694 Score: 455
Period size: 123 Copynumber: 2.2 Consensus size: 125
14663410 GCCATGTAAG
*
14663420 CGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTACTGAAAAAATAATTTTGAGTTGACGTTTC
1 CGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTACTGAAAAAATAATTTCGAGTTGACGTTTC
* * * *
14663485 TGAGCAAATAGTATAAAAAACGGTTGAAGCAGGATGTTTTATCAGAAGAATTTCTGAAAT
66 TGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCTAAAAT
* *
14663545 CGCTCCCATGTGGACGCGCTTTTGCTACAGTAGGTCCTG-AAAAATAATTTCGAGTTGACGTTTC
1 CGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTACTGAAAAAATAATTTCGAGTTGACGTTTC
*
14663609 TGAGCAAATAGTAT-AAAAACGCTTCAAGTAGGATGCTTTATCAGAAGAATTTCTAAAAT
66 TGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCTAAAAT
*
14663668 CGCTCCCACGTGGACGCGTTTTTGCTA
1 CGCTCCCACGTGGACGCGCTTTTGCTA
14663695 TAATAGCATG
Statistics
Matches: 140, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
123 65 0.46
124 38 0.27
125 37 0.26
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (125 bp):
CGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTACTGAAAAAATAATTTCGAGTTGACGTTTC
TGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCTAAAAT
Found at i:14665859 original size:43 final size:43
Alignment explanation
Indices: 14665812--14666011 Score: 274
Period size: 43 Copynumber: 4.7 Consensus size: 43
14665802 TTATGTGAAA
** * *
14665812 AAACGCCGCTAAAGGCCATGACCTTTAGTGGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTGTCAC
* *
14665855 AAACGCTGCTAAAGAACATGACCTTTAGCGGAGCTTTTGTCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTGTCAC
* *
14665898 AAACGCCACTAAAGAACATGACTTTTAGCGGCGCTTTTGTCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTGTCAC
* *** * *
14665941 AAATGCCGCTAAAGAACATGACCTTTAGCAATGCTTTTCTCAT
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTGTCAC
14665984 AAACGCCGCTAAAGAACATGACCTTTAG
1 AAACGCCGCTAAAGAACATGACCTTTAG
14666012 TGACGCTTCT
Statistics
Matches: 138, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 138 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTGTCAC
Found at i:14669158 original size:3 final size:3
Alignment explanation
Indices: 14669150--14669175 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14669140 CAATGAATCA
14669150 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
14669176 ATGAATCCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:14669322 original size:38 final size:38
Alignment explanation
Indices: 14669279--14669360 Score: 119
Period size: 38 Copynumber: 2.2 Consensus size: 38
14669269 TAAAACAATT
* * *
14669279 GATAAACCAAACTTTGTGAGATAAACATGTAAAAAACA
1 GATAAAACAAAATTTGTGAGATAAACATATAAAAAACA
*
14669317 GATAAAAGAAAATTTGTGAGATAAACATATAAAAAACA
1 GATAAAACAAAATTTGTGAGATAAACATATAAAAAACA
*
14669355 TATAAA
1 GATAAA
14669361 GTTTGTAACC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.57, C:0.09, G:0.12, T:0.22
Consensus pattern (38 bp):
GATAAAACAAAATTTGTGAGATAAACATATAAAAAACA
Found at i:14670246 original size:38 final size:40
Alignment explanation
Indices: 14670191--14670274 Score: 109
Period size: 39 Copynumber: 2.1 Consensus size: 40
14670181 TGGGCTTAGG
*
14670191 TTTTTTGCGGCGCTTTTCT-AAAAACGCCACTAATGCTCA
1 TTTTTAGCGGCGCTTTTCTGAAAAACGCCACTAATGCTCA
** * *
14670230 TTTTTAGCGGCG-TTTTCTGAAAAGTGCCGCTAATGCTTA
1 TTTTTAGCGGCGCTTTTCTGAAAAACGCCACTAATGCTCA
14670269 TTTTTA
1 TTTTTA
14670275 AATATAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 6 0.15
39 33 0.85
ACGTcount: A:0.21, C:0.20, G:0.18, T:0.40
Consensus pattern (40 bp):
TTTTTAGCGGCGCTTTTCTGAAAAACGCCACTAATGCTCA
Found at i:14670886 original size:97 final size:97
Alignment explanation
Indices: 14670592--14670867 Score: 543
Period size: 97 Copynumber: 2.8 Consensus size: 97
14670582 TATATAAGAA
*
14670592 CTTAATTAATATATAAATTAAAAAATACTAATTAATCTAAAACCTAAACCCTAACCCAAATTCCT
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAAACCTAAACCCTAACCCAAATTCCT
14670657 AACCCCTAACCCCTAACTACTAACCCCTAAAC
66 AACCCCTAACCCCTAACTACTAACCCCTAAAC
14670689 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAAACCTAAACCCTAACCCAAATTCCT
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAAACCTAAACCCTAACCCAAATTCCT
14670754 AACCCCTAACCCCTAACTACTAACCCCTAAAC
66 AACCCCTAACCCCTAACTACTAACCCCTAAAC
14670786 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAAACCTAAACCCTAACCCAAATTCCT
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAAACCTAAACCCTAACCCAAATTCCT
14670851 AACCCCTAACCCCTAAC
66 AACCCCTAACCCCTAAC
14670868 CCTTAAATCA
Statistics
Matches: 178, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 178 1.00
ACGTcount: A:0.45, C:0.28, G:0.00, T:0.27
Consensus pattern (97 bp):
CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAAACCTAAACCCTAACCCAAATTCCT
AACCCCTAACCCCTAACTACTAACCCCTAAAC
Found at i:14670912 original size:14 final size:15
Alignment explanation
Indices: 14670893--14670925 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
14670883 CTTAAACCAG
14670893 AATCCCT-ATTCCAT
1 AATCCCTAATTCCAT
14670907 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
14670922 AATC
1 AATC
14670926 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:14671242 original size:41 final size:41
Alignment explanation
Indices: 14671181--14671329 Score: 232
Period size: 41 Copynumber: 3.7 Consensus size: 41
14671171 CAATGTTTTT
14671181 GCGGCGC-TTTTCAAAAACGCCGCTAAAAGCCAGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAAGCCAGAGCATTA
*
14671221 GCGGCGCTTCTTT-AAAAACGCCGCTAAAAG-CATGAGCAATA
1 GCGGCGCTT-TTTCAAAAACGCCGCTAAAAGCCA-GAGCATTA
* *
14671262 GCGGCGTTTTTTCAAAAACGCCGCTAAAAGCCTGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAAGCCAGAGCATTA
14671303 GCGGCGCTTTTTCAAAAACGCCGCTAA
1 GCGGCGCTTTTTCAAAAACGCCGCTAA
14671330 TGCCCCAAAA
Statistics
Matches: 99, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
40 12 0.12
41 83 0.84
42 4 0.04
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (41 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAAGCCAGAGCATTA
Found at i:14672850 original size:49 final size:49
Alignment explanation
Indices: 14672732--14672852 Score: 224
Period size: 49 Copynumber: 2.5 Consensus size: 49
14672722 TAAGAATATT
* *
14672732 AACTATTTTGTATTTTATTAAATGAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
14672781 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
14672830 AACTATTTTGTATTTTATTACAT
1 AACTATTTTGTATTTTATTACAT
14672853 TAATATAAAC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 70 1.00
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (49 bp):
AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
Found at i:14673009 original size:21 final size:22
Alignment explanation
Indices: 14672985--14673032 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
14672975 GCAGAGGTTG
*
14672985 TGGTTGC-TCCGG-AGGGGATTC
1 TGGTTGCAACCGGTAGGGGA-TC
14673006 TGGTT-CAACCGGTAGGGGATC
1 TGGTTGCAACCGGTAGGGGATC
14673027 TGGTTG
1 TGGTTG
14673033 TCGGTGTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 16 0.70
22 6 0.26
ACGTcount: A:0.12, C:0.17, G:0.42, T:0.29
Consensus pattern (22 bp):
TGGTTGCAACCGGTAGGGGATC
Found at i:14673299 original size:18 final size:18
Alignment explanation
Indices: 14673273--14673315 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
14673263 GACTAGAAAA
* * *
14673273 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
14673291 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
14673309 AGGATAC
1 AGGATAC
14673316 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:14685971 original size:15 final size:16
Alignment explanation
Indices: 14685941--14685973 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
14685931 AGTGCCAAAT
*
14685941 TATTATTTATTTGTGA
1 TATTATATATTTGTGA
14685957 TATTATATA-TTGTGA
1 TATTATATATTTGTGA
14685972 TA
1 TA
14685974 ATACGATGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (16 bp):
TATTATATATTTGTGA
Found at i:14702423 original size:16 final size:16
Alignment explanation
Indices: 14702370--14702425 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
14702360 CGTTTGGTTC
14702370 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
14702386 GTTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
14702402 GGTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
14702418 ACTGTAAT
1 GCTGTAAT
14702426 AGTAATTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.38, C:0.04, G:0.30, T:0.29
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:14702458 original size:45 final size:44
Alignment explanation
Indices: 14702407--14702499 Score: 152
Period size: 44 Copynumber: 2.1 Consensus size: 44
14702397 ATAGAGGTGT
14702407 AATGGAATAGAACTGTAATAGTAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGT-ATTC-ATGTGTTTGGTTGAATGG
*
14702452 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCATGTGTTTGGTTGAATGG
14702496 AATG
1 AATG
14702500 ATGTTGTAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.50
45 22 0.48
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCATGTGTTTGGTTGAATGG
Found at i:14702699 original size:17 final size:18
Alignment explanation
Indices: 14702658--14702692 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
14702648 TTATTATTAA
14702658 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
14702676 ATATAATTTAA-AAAAAT
1 ATATAATTTAATAAAAAT
14702693 TCTTAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:14702721 original size:55 final size:54
Alignment explanation
Indices: 14702612--14702728 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 54
14702602 GATTATTAAT
** *
14702612 ATAAATAATAAATAATTTAATCATATTTTAACATAATTATTATTAAATATAATTTA
1 ATAAA-AATAAATAATTTAAAAAAATTTTAACATAATTATTATT-AATATAATTTA
* * *
14702668 ATAAAAATATATAATTTAAAAAAATTCTTAATATAATTATTCTT-ATATGAATTTA
1 ATAAAAATAAATAATTTAAAAAAATT-TTAACATAATTATTATTAATAT-AATTTA
*
14702723 CTAAAA
1 ATAAAA
14702729 TCATAATATA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 4 0.08
55 28 0.54
56 20 0.38
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (54 bp):
ATAAAAATAAATAATTTAAAAAAATTTTAACATAATTATTATTAATATAATTTA
Found at i:14702979 original size:23 final size:24
Alignment explanation
Indices: 14702968--14703013 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
14702958 TCATAATATC
14702968 CAAACATAATATTCAT-ATATTAA
1 CAAACATAATATTCATAATATTAA
14702991 CAAACATAATATTCAT-ATATTAA
1 CAAACATAATATTCATAATATTAA
14703014 TAAAAAGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (24 bp):
CAAACATAATATTCATAATATTAA
Found at i:14704389 original size:29 final size:29
Alignment explanation
Indices: 14704356--14704414 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
14704346 ATCACGATGG
*
14704356 CTATGGGAAACAACTTGCAAGTTTACTCT
1 CTATGAGAAACAACTTGCAAGTTTACTCT
14704385 CTATGAGAAACAACTTGCAAGTTTACTCT
1 CTATGAGAAACAACTTGCAAGTTTACTCT
14704414 C
1 C
14704415 ATTATTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (29 bp):
CTATGAGAAACAACTTGCAAGTTTACTCT
Found at i:14708309 original size:13 final size:14
Alignment explanation
Indices: 14708291--14708319 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14708281 TCTACTCGTA
14708291 TGGA-TTTTCTTTT
1 TGGATTTTTCTTTT
14708304 TGGATTTTTCTTTT
1 TGGATTTTTCTTTT
14708318 TG
1 TG
14708320 TTTTACACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.27
14 11 0.73
ACGTcount: A:0.07, C:0.07, G:0.17, T:0.69
Consensus pattern (14 bp):
TGGATTTTTCTTTT
Found at i:14717758 original size:57 final size:56
Alignment explanation
Indices: 14717699--14717825 Score: 173
Period size: 57 Copynumber: 2.2 Consensus size: 56
14717689 AGTAATGGTG
* *
14717699 AAATGAATAAATAGGAAACATTTGGAAATGATTATGGTTTTCTTCAAAATGAAAATGAA
1 AAATGAA-AAAT-GGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAATG-A
* * * *
14717758 AAAGGAGAAATGGAATCATTTGGAAATGAATATGGTTTTCTCCAAGATGAAAATGA
1 AAATGAAAAATGGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAATGA
14717814 AAATGAAAAATG
1 AAATGAAAAATG
14717826 ACCTAAAAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
56 11 0.18
57 40 0.67
58 4 0.07
59 5 0.08
ACGTcount: A:0.47, C:0.06, G:0.20, T:0.28
Consensus pattern (56 bp):
AAATGAAAAATGGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAATGA
Found at i:14719533 original size:21 final size:21
Alignment explanation
Indices: 14719507--14719570 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 21
14719497 CATATGGAAT
14719507 TTATAATTTAGATTATATGCA
1 TTATAATTTAGATTATATGCA
* *
14719528 TTATAATAT-G-GT-T-T---
1 TTATAATTTAGATTATATGCA
14719542 TTATAATTTAGATTATATGCA
1 TTATAATTTAGATTATATGCA
14719563 TTATAATT
1 TTATAATT
14719571 ATATATATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
14 8 0.25
15 1 0.03
16 1 0.03
17 2 0.06
18 2 0.06
19 1 0.03
20 1 0.03
21 16 0.50
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (21 bp):
TTATAATTTAGATTATATGCA
Found at i:14719537 original size:35 final size:35
Alignment explanation
Indices: 14719498--14719569 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
14719488 AGGTTAGTTC
14719498 ATATGGAATTTATAATTTAGATTATATGCATTATA
1 ATATGGAATTTATAATTTAGATTATATGCATTATA
**
14719533 ATATGGTTTTTATAATTTAGATTATATGCATTATA
1 ATATGGAATTTATAATTTAGATTATATGCATTATA
14719568 AT
1 AT
14719570 TATATATATG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.38, C:0.03, G:0.11, T:0.49
Consensus pattern (35 bp):
ATATGGAATTTATAATTTAGATTATATGCATTATA
Found at i:14723120 original size:30 final size:31
Alignment explanation
Indices: 14723079--14723145 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 31
14723069 TTTCAATTAA
14723079 GTCACTAACGTTTTAGATCA-TTCTATTTTG
1 GTCACTAACGTTTTAGATCATTTCTATTTTG
* * * *
14723109 GTCACTCACGTTTTAGATTATTTTTCTTTTG
1 GTCACTAACGTTTTAGATCATTTCTATTTTG
14723140 GTCACT
1 GTCACT
14723146 TTCCGTTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 18 0.56
31 14 0.44
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.49
Consensus pattern (31 bp):
GTCACTAACGTTTTAGATCATTTCTATTTTG
Found at i:14723612 original size:15 final size:16
Alignment explanation
Indices: 14723568--14723619 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
14723558 AAGACTGACC
*
14723568 AAAATAGAAACGATCT
1 AAAATAGAAATGATCT
* * *
14723584 AAAACATAAGTGATC-
1 AAAATAGAAATGATCT
14723599 AAAATAGAAATGATCT
1 AAAATAGAAATGATCT
14723615 AAAAT
1 AAAAT
14723620 GTTAGTGACT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
15 12 0.43
16 16 0.57
ACGTcount: A:0.58, C:0.10, G:0.12, T:0.21
Consensus pattern (16 bp):
AAAATAGAAATGATCT
Found at i:14726148 original size:6 final size:6
Alignment explanation
Indices: 14726137--14726164 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
14726127 TATGTTTAAA
14726137 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
14726165 TGCTTCCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:14731342 original size:13 final size:13
Alignment explanation
Indices: 14731324--14731400 Score: 127
Period size: 13 Copynumber: 5.9 Consensus size: 13
14731314 AGTTCTTTAT
14731324 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
14731337 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
* *
14731350 TGATTTTCAGAAG
1 TGCTTTTGAGAAG
14731363 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
*
14731376 TGCTTTGGAGAAG
1 TGCTTTTGAGAAG
14731389 TGCTTTTGAGAA
1 TGCTTTTGAGAA
14731401 ATTTGAGTGT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 58 1.00
ACGTcount: A:0.25, C:0.08, G:0.30, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:14732014 original size:22 final size:21
Alignment explanation
Indices: 14731989--14732032 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
14731979 AAGCATATGA
*
14731989 AAATGATTTGGTTATATTCAAT
1 AAATGATTTGGTTA-ATACAAT
14732011 AAATGATTTGGTTAATACAAT
1 AAATGATTTGGTTAATACAAT
14732032 A
1 A
14732033 CTTATATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.41
Consensus pattern (21 bp):
AAATGATTTGGTTAATACAAT
Found at i:14732041 original size:22 final size:22
Alignment explanation
Indices: 14732016--14732086 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
14732006 TCAATAAATG
14732016 ATTTGGTTAATACAATACTTAT
1 ATTTGGTTAATACAATACTTAT
* * **
14732038 ATTT-GATAA-GCATATGA-AAAT
1 ATTTGGTTAATACA-AT-ACTTAT
14732059 GATTTGGTTAATACAATACTTAT
1 -ATTTGGTTAATACAATACTTAT
14732082 ATTTG
1 ATTTG
14732087 ATAAGCATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
20 2 0.06
21 8 0.23
22 15 0.43
23 8 0.23
24 2 0.06
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.42
Consensus pattern (22 bp):
ATTTGGTTAATACAATACTTAT
Found at i:14732059 original size:44 final size:44
Alignment explanation
Indices: 14732011--14732104 Score: 188
Period size: 44 Copynumber: 2.1 Consensus size: 44
14732001 TATATTCAAT
14732011 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
1 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
14732055 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
1 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
14732099 AAATGA
1 AAATGA
14732105 AAGTCGAGAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.37
Consensus pattern (44 bp):
AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
Found at i:14732123 original size:44 final size:43
Alignment explanation
Indices: 14732027--14732114 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 43
14732017 TTTGGTTAAT
** * *
14732027 ACAATACTTATATTTGATAAGCATATGAAAATGATTTGGTTAAT
1 ACAATACTTATATTTGATAAGCATATGAAAATGA-TAAGTCAAG
*
14732071 ACAATACTTATATTTGATAAGCATATGAAAATGA-AAGTCGAG
1 ACAATACTTATATTTGATAAGCATATGAAAATGATAAGTCAAG
14732113 AC
1 AC
14732115 TGTATACTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 5 0.13
44 34 0.87
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (43 bp):
ACAATACTTATATTTGATAAGCATATGAAAATGATAAGTCAAG
Found at i:14734638 original size:3 final size:3
Alignment explanation
Indices: 14734630--14734661 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
14734620 ATGCTGAGGT
14734630 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
14734662 GGAGGAGGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:14745391 original size:18 final size:18
Alignment explanation
Indices: 14745368--14745402 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14745358 ATCATCACAT
14745368 CATGAACATGATCATGAC
1 CATGAACATGATCATGAC
*
14745386 CATGAACTTGATCATGA
1 CATGAACATGATCATGA
14745403 TGGTGTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (18 bp):
CATGAACATGATCATGAC
Found at i:14748191 original size:13 final size:13
Alignment explanation
Indices: 14748173--14748199 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14748163 TATTTTTTTA
14748173 ATTTTTAATTAAT
1 ATTTTTAATTAAT
14748186 ATTTTTAATTAAT
1 ATTTTTAATTAAT
14748199 A
1 A
14748200 AATATATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
ATTTTTAATTAAT
Found at i:14748344 original size:100 final size:99
Alignment explanation
Indices: 14748231--14748432 Score: 264
Period size: 100 Copynumber: 2.0 Consensus size: 99
14748221 TTAATTTATC
* **
14748231 TTTTCAATTAATAA-CTCTTTTATTTATATAAATAAAATAGTGTATATGTAATTATATAATAAAA
1 TTTTCAATTAATAATCTC-TTTATTTATATAAATAAAATAATAAATATGTAATTATATAATAAAA
*
14748295 -TATATTTTTTATATATGTATCATTATGTTAAAAATA
65 TTATA-TTTTT-TATATCTATCATTATGTTAAAAATA
* * * * *
14748331 TTTTTAATTAATAATTTCTTTATTTATATAACTAAATTAATAAATATGTAATTATATAATGAAAT
1 TTTTCAATTAATAATCTCTTTATTTATATAAATAAAATAATAAATATGTAATTATATAATAAAAT
* *
14748396 TATATTTTTTATATCTATCATTTTGTTAAATATA
66 TATATTTTTTATATCTATCATTATGTTAAAAATA
14748430 TTT
1 TTT
14748433 ATATAAAAAA
Statistics
Matches: 89, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
99 25 0.28
100 58 0.65
101 6 0.07
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (99 bp):
TTTTCAATTAATAATCTCTTTATTTATATAAATAAAATAATAAATATGTAATTATATAATAAAAT
TATATTTTTTATATCTATCATTATGTTAAAAATA
Found at i:14751308 original size:28 final size:27
Alignment explanation
Indices: 14751277--14751330 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
14751267 AATAAAAGTA
* *
14751277 ATTTTAAATAAAATTTAATAAAAAATTC
1 ATTTCAAATAAAATCTAA-AAAAAATTC
*
14751305 ATTTCAAATAATATCTAAAAAAAATT
1 ATTTCAAATAAAATCTAAAAAAAATT
14751331 GTTGAACTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (27 bp):
ATTTCAAATAAAATCTAAAAAAAATTC
Found at i:14751487 original size:20 final size:20
Alignment explanation
Indices: 14751436--14751489 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
14751426 GTACTGATCT
**
14751436 AGTATCGATACTTTTTGTCA
1 AGTATCGATAGATTTTGTCA
* **
14751456 AGTATCGGTAGATTTTGTTG
1 AGTATCGATAGATTTTGTCA
14751476 AGTATCGATAGATT
1 AGTATCGATAGATT
14751490 CAAAATTTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (20 bp):
AGTATCGATAGATTTTGTCA
Found at i:14751728 original size:134 final size:134
Alignment explanation
Indices: 14751495--14751740 Score: 289
Period size: 134 Copynumber: 1.8 Consensus size: 134
14751485 AGATTCAAAA
* * * *** * * *
14751495 TTTTATCGATATATTTTTCAATATTGATACGAAAATGACATTCTGTTTTTCAAAGTATTTATCCA
1 TTTTATCAATATATTTTTCAACATCGATACGAAAATGACATTCTAACTTCCAAAGGATTTATCAA
* ** * *
14751560 GTATCGATATGGTACTGATACCTTTTGTTGGGTATCGATAAATTTCTTCAAGTATCGATAGTGGT
66 GTATCGATACGGTACTGATACCTACTATTGGGTATCGATAAAATTCTTCAAGTATCGATAGTGGT
14751625 ATAC
131 ATAC
* * *
14751629 TTTTATCAATATGTTTTTCAGCATCGATACGAAATTGACATTCTAACTTCCAAAGGATTTATCAA
1 TTTTATCAATATATTTTTCAACATCGATACGAAAATGACATTCTAACTTCCAAAGGATTTATCAA
* *
14751694 GTA-CTGATACGGTA-TCGATACCTACTATTTGGTATTGATAAAATTCT
66 GTATC-GATACGGTACT-GATACCTACTATTGGGTATCGATAAAATTCT
14751741 CTTGGTATCG
Statistics
Matches: 91, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
133 2 0.02
134 89 0.98
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (134 bp):
TTTTATCAATATATTTTTCAACATCGATACGAAAATGACATTCTAACTTCCAAAGGATTTATCAA
GTATCGATACGGTACTGATACCTACTATTGGGTATCGATAAAATTCTTCAAGTATCGATAGTGGT
ATAC
Found at i:14753832 original size:20 final size:18
Alignment explanation
Indices: 14753807--14753855 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 18
14753797 TCGAGGATCC
14753807 ATTTGAAACAAAATAGAAAA
1 ATTTGAAA-AAAAT-GAAAA
*
14753827 ATTTGAGAAAACATGAAAA
1 ATTTGA-AAAAAATGAAAA
14753846 ATTTTGAAAA
1 A-TTTGAAAA
14753856 GGGGTCACAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 9 0.35
20 15 0.58
21 2 0.08
ACGTcount: A:0.59, C:0.04, G:0.12, T:0.24
Consensus pattern (18 bp):
ATTTGAAAAAAATGAAAA
Found at i:14759266 original size:27 final size:27
Alignment explanation
Indices: 14759226--14759341 Score: 101
Period size: 27 Copynumber: 4.3 Consensus size: 27
14759216 CCATCTCGGT
* * * * *
14759226 AGACTGTCCTGTGTTTAGTGTTTCGTT
1 AGACTATCCCGTGTTTAATGTCTCGTC
* *
14759253 GGACTATCTCGTGTTTAATGTCTCGTC
1 AGACTATCCCGTGTTTAATGTCTCGTC
* * *
14759280 AGATTATCCCGTGTTTAATGTCCCATC
1 AGACTATCCCGTGTTTAATGTCTCGTC
*
14759307 AAACTAT-CCGATGTTTAATGTCTCGTC
1 AGACTATCCCG-TGTTTAATGTCTCGTC
14759334 -GAACTATC
1 AG-ACTATC
14759342 TATGATGCCA
Statistics
Matches: 69, Mismatches: 17, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
26 3 0.04
27 66 0.96
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.40
Consensus pattern (27 bp):
AGACTATCCCGTGTTTAATGTCTCGTC
Found at i:14759420 original size:180 final size:181
Alignment explanation
Indices: 14759210--14759558 Score: 431
Period size: 180 Copynumber: 1.9 Consensus size: 181
14759200 TATACTCCTA
* ** * *
14759210 TGTTTACCATCTCGGTAGACTGTCCTGTGTTTAGTGTT-TCGTTGGACTAT-CTCGTGTTTAATG
1 TGTTTACCATCTCGATAGACCATCCTGTGTTTAGTGTTCT-GTTAGACTATCCT-ATGTTTAATG
* * * *
14759273 -TCTCGTCAGATTATCCCGTGTTTAATGTCCCA-TCAAACTATCC-GATGTTTAATGTCTC-GTC
64 TTC-CGTCAGACTATCCCGTGTTTAATATCCCATTCAAACTATCCTG-TGTTTAATGTATCAAT-
*
14759334 GAACTATCTATGATGCCATAACGTCTTGTAGCTATAGTCTTACATGATATACCCCG
126 GAACTATCTATGATGCCATAACGTCTTGTAGCGATAGTCTTACATGATATACCCCG
*
14759390 TGTTTACCATCTCGATGGACCATCCTGTGTTTAGTGTTCTGTTAGACTATCCTATGTTTAATGTT
1 TGTTTACCATCTCGATAGACCATCCTGTGTTTAGTGTTCTGTTAGACTATCCTATGTTTAATGTT
* * *** *
14759455 CCGTCGGACTATCTCGTGTTTAATATCCCATTTGGACTATCCTGTGTTTAATGTATCAATTAACT
66 CCGTCAGACTATCCCGTGTTTAATATCCCATTCAAACTATCCTGTGTTTAATGTATCAATGAACT
* * *
14759520 ATCTATGATGCCATAATGTCTTTTAGCGATGGTCTTACA
131 ATCTATGATGCCATAACGTCTTGTAGCGATAGTCTTACA
14759559 CAATCTAACC
Statistics
Matches: 143, Mismatches: 20, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
180 77 0.54
181 64 0.45
182 2 0.01
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (181 bp):
TGTTTACCATCTCGATAGACCATCCTGTGTTTAGTGTTCTGTTAGACTATCCTATGTTTAATGTT
CCGTCAGACTATCCCGTGTTTAATATCCCATTCAAACTATCCTGTGTTTAATGTATCAATGAACT
ATCTATGATGCCATAACGTCTTGTAGCGATAGTCTTACATGATATACCCCG
Found at i:14759464 original size:27 final size:27
Alignment explanation
Indices: 14759405--14759508 Score: 102
Period size: 27 Copynumber: 3.8 Consensus size: 27
14759395 ACCATCTCGA
* * *
14759405 TGGACCATCCTGTGTTTAGTGTTCTGT
1 TGGACTATCCTGTGTTTAATGTTCCGT
* *
14759432 TAGACTATCCTATGTTTAATGTTCCGT
1 TGGACTATCCTGTGTTTAATGTTCCGT
* * * *
14759459 CGGACTAT-CTCGTGTTTAATATCCCATT
1 TGGACTATCCT-GTGTTTAATGTTCC-GT
14759487 TGGACTATCCTGTGTTTAATGT
1 TGGACTATCCTGTGTTTAATGT
14759509 ATCAATTAAC
Statistics
Matches: 61, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
26 2 0.03
27 39 0.64
28 18 0.30
29 2 0.03
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.43
Consensus pattern (27 bp):
TGGACTATCCTGTGTTTAATGTTCCGT
Found at i:14760380 original size:32 final size:32
Alignment explanation
Indices: 14760344--14760410 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
14760334 TTCATTCTCT
* *
14760344 TTATCCCTACGTTTATCGAAGGACTAAGAACC
1 TTATCCCTACATTTATAGAAGGACTAAGAACC
14760376 TTATCCCTACATTTATAGAAGGACTAAGAACC
1 TTATCCCTACATTTATAGAAGGACTAAGAACC
14760408 TTA
1 TTA
14760411 CCTGCTCACT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.30
Consensus pattern (32 bp):
TTATCCCTACATTTATAGAAGGACTAAGAACC
Found at i:14769029 original size:52 final size:52
Alignment explanation
Indices: 14768967--14769070 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 52
14768957 AAGGAATTTA
* *
14768967 ATAATTATTAGTTACTAATTTTCCAGTATATTATGGAATTAGGTGCTGACCC
1 ATAATTATTAGCTACTAATTTTCCAGTATATTATGGAATTAGGTGCTAACCC
* *
14769019 ATAATTATTAGCTACTGATTTTTCAGTATATTATGGAATTAGGTGCTAACCC
1 ATAATTATTAGCTACTAATTTTCCAGTATATTATGGAATTAGGTGCTAACCC
14769071 GAACACCTCG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.40
Consensus pattern (52 bp):
ATAATTATTAGCTACTAATTTTCCAGTATATTATGGAATTAGGTGCTAACCC
Found at i:14774472 original size:30 final size:30
Alignment explanation
Indices: 14774416--14774494 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 30
14774406 TGGTTGACCC
* * **
14774416 ATCCCTTTTCATAATTCGATAACCGAAGTT
1 ATCCCTTTTCATAATTTGACAACCGAAACT
*
14774446 ATCCCTTTTCATAATTTGACAGCCGAAACT
1 ATCCCTTTTCATAATTTGACAACCGAAACT
**
14774476 ATATCTTTTCATAATTTGA
1 ATCCCTTTTCATAATTTGA
14774495 TGGTTGTCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGACAACCGAAACT
Found at i:14774513 original size:30 final size:30
Alignment explanation
Indices: 14774479--14774610 Score: 115
Period size: 30 Copynumber: 4.4 Consensus size: 30
14774469 CGAAACTATA
* *
14774479 TCTTTTCATAATTTGATGGTTGTCACCATC
1 TCTTTTCATAATTTGATGATCGTCACCATC
** *
14774509 TCTTTTCATTGTTCGATGATCGTCACCATC
1 TCTTTTCATAATTTGATGATCGTCACCATC
* * *
14774539 CCTTTTCATAATTTGAT-AGTCG-AAGCTATC
1 TCTTTTCATAATTTGATGA-TCGTCA-CCATC
* * * *
14774569 CCTTTTCATAGTTCGATGATCGTCACAATC
1 TCTTTTCATAATTTGATGATCGTCACCATC
*
14774599 CCTTTTCATAAT
1 TCTTTTCATAAT
14774611 CGATAGCCGA
Statistics
Matches: 82, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
29 2 0.02
30 78 0.95
31 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.12, T:0.42
Consensus pattern (30 bp):
TCTTTTCATAATTTGATGATCGTCACCATC
Found at i:14774544 original size:60 final size:60
Alignment explanation
Indices: 14774480--14774636 Score: 192
Period size: 60 Copynumber: 2.6 Consensus size: 60
14774470 GAAACTATAT
* * * * * *
14774480 CTTTTCATAATTTGATGGTTGTCA-CCATCTCTTTTCATTGTTCGATGATCGTCACCATCC
1 CTTTTCATAATTTGATAGTCG-AAGCCATCCCTTTTCATAGTTCGATGATCGTCACAATCC
*
14774540 CTTTTCATAATTTGATAGTCGAAGCTATCCCTTTTCATAGTTCGATGATCGTCACAATCC
1 CTTTTCATAATTTGATAGTCGAAGCCATCCCTTTTCATAGTTCGATGATCGTCACAATCC
* * * *
14774600 CTTTTCATAA-TCGATAGCCGAAGCTATCCATTTTCAT
1 CTTTTCATAATTTGATAGTCGAAGCCATCCCTTTTCAT
14774637 TCATCGATAA
Statistics
Matches: 86, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
59 25 0.29
60 61 0.71
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (60 bp):
CTTTTCATAATTTGATAGTCGAAGCCATCCCTTTTCATAGTTCGATGATCGTCACAATCC
Found at i:14774628 original size:29 final size:29
Alignment explanation
Indices: 14774536--14774645 Score: 98
Period size: 30 Copynumber: 3.7 Consensus size: 29
14774526 GATCGTCACC
*
14774536 ATCCCTTTTCATAATTTGATAGTCGAAGCT
1 ATCCCTTTTCATAA-TCGATAGTCGAAGCT
* * *
14774566 ATCCCTTTTCATAGTTCGAT-GATCGTCA-CA
1 ATCCCTTTTCATA-ATCGATAG-TCG-AAGCT
*
14774596 ATCCCTTTTCATAATCGATAGCCGAAGCT
1 ATCCCTTTTCATAATCGATAGTCGAAGCT
* *
14774625 ATCCATTTTCATTCATCGATA
1 ATCCCTTTTCA-TAATCGATA
14774646 ATCAAAATCA
Statistics
Matches: 64, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
28 1 0.02
29 19 0.30
30 43 0.67
31 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.37
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGTCGAAGCT
Found at i:14780919 original size:29 final size:29
Alignment explanation
Indices: 14780887--14780977 Score: 123
Period size: 29 Copynumber: 3.1 Consensus size: 29
14780877 ATCACCATCA
14780887 CTTTTCATAATTGATAGCCGAAACTATCC
1 CTTTTCATAATTGATAGCCGAAACTATCC
* *
14780916 CTTTTCATATTTGATAGCCGAAGCTATCC
1 CTTTTCATAATTGATAGCCGAAACTATCC
*
14780945 CTTTTCAT-ATTCGGTAGCC-AAAGCTATCC
1 CTTTTCATAATT-GATAGCCGAAA-CTATCC
14780974 CTTT
1 CTTT
14780978 CCATTCACCG
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
28 4 0.07
29 51 0.93
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.37
Consensus pattern (29 bp):
CTTTTCATAATTGATAGCCGAAACTATCC
Found at i:14782951 original size:39 final size:40
Alignment explanation
Indices: 14782856--14783117 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
14782846 TTGAATGATG
*
14782856 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
14782894 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
14782935 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
14782974 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
14783013 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
14783052 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
14783091 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
14783118 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:14792048 original size:39 final size:40
Alignment explanation
Indices: 14791953--14792214 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
14791943 TTGAATGATG
*
14791953 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
14791991 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
14792032 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
14792071 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
14792110 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
14792149 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
14792188 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
14792215 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:14794409 original size:274 final size:276
Alignment explanation
Indices: 14793918--14794471 Score: 986
Period size: 274 Copynumber: 2.0 Consensus size: 276
14793908 GATCCCGAAA
* * * *
14793918 ACATAGAAATCATTAAAAATGAGACAAAAAAATCACTTACATGTAAGGATACTAAGGCCAAACCT
1 ACATAGAAATCATTAAAAACGAGACAAAAAAATCACTTACACGCAAGAATACTAAGGCCAAACCT
14793983 TCCAAAGCACAACAATGGAGTTTTTTCCTTCTTTATTTTCGGTTGAAGATGAGTTAGAAAGATGA
66 TCCAAAGCACAACAATGGAGTTTTTTCCTTCTTTATTTTCGGTTGAAGATGAGTTAGAAAGATGA
*
14794048 TACATTTGTCTTTCATTTTAGTTTAATTTCATTTATTTACTAATTTACATATTTACCCTTAAGTA
131 TACATTTGTCTTTCATTTTAGTTTAATTTCATTTATTTACTAAGTTACATATTTACCCTTAAGTA
* *
14794113 ATAATTTTTAAAACCATGATATAAGTGTCCATATTTGTCCACTAATAATGTTAAGGGTATAATTA
196 ATAACTTTTAAAACCATGATATAAGTGTCCATATTTGTCCACTAATAATGTTAAGGGCATAATTA
*
14794178 CCATTTAAGGCCACCT
261 CCATTTAAGGCCACCC
* *
14794194 ACATAGAAATCATTAAAAACGAGACAAAAAAATCACTTACACGCAAGAATACTATGGCCGAACCT
1 ACATAGAAATCATTAAAAACGAGACAAAAAAATCACTTACACGCAAGAATACTAAGGCCAAACCT
*
14794259 TCCAAA-CACAACAATGGAG-TTTTTCCTTCTTTATTTTTGGTTGAAGATGAGTTAGAAAGATGA
66 TCCAAAGCACAACAATGGAGTTTTTTCCTTCTTTATTTTCGGTTGAAGATGAGTTAGAAAGATGA
14794322 TACATTTGTCTTTCATTTTAGTTTAATTTCATTTATTTACTAAGTTACATATTTACCCTTAAGTA
131 TACATTTGTCTTTCATTTTAGTTTAATTTCATTTATTTACTAAGTTACATATTTACCCTTAAGTA
*
14794387 ATAACTTTTAAAACCATGATATAAGTGTCCATATTTGTCCACTAATAATGTTAAGGGCCTAATTA
196 ATAACTTTTAAAACCATGATATAAGTGTCCATATTTGTCCACTAATAATGTTAAGGGCATAATTA
14794452 CCATTTAAGGCCACCC
261 CCATTTAAGGCCACCC
14794468 ACAT
1 ACAT
14794472 TCAAAATTCA
Statistics
Matches: 266, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
274 188 0.71
275 13 0.05
276 65 0.24
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.35
Consensus pattern (276 bp):
ACATAGAAATCATTAAAAACGAGACAAAAAAATCACTTACACGCAAGAATACTAAGGCCAAACCT
TCCAAAGCACAACAATGGAGTTTTTTCCTTCTTTATTTTCGGTTGAAGATGAGTTAGAAAGATGA
TACATTTGTCTTTCATTTTAGTTTAATTTCATTTATTTACTAAGTTACATATTTACCCTTAAGTA
ATAACTTTTAAAACCATGATATAAGTGTCCATATTTGTCCACTAATAATGTTAAGGGCATAATTA
CCATTTAAGGCCACCC
Found at i:14797034 original size:19 final size:20
Alignment explanation
Indices: 14797009--14797063 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
14796999 GATACCAATA
14797009 GAAAAA-TATCGATACTTTAT
1 GAAAAATTATCGATAC-TTAT
*
14797029 -AAAAATTATCAATACTTAT
1 GAAAAATTATCGATACTTAT
14797048 GAAAAATTATCGATAC
1 GAAAAATTATCGATAC
14797064 CTATCGGGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 9 0.29
20 22 0.71
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.33
Consensus pattern (20 bp):
GAAAAATTATCGATACTTAT
Found at i:14798988 original size:19 final size:20
Alignment explanation
Indices: 14798964--14799015 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
14798954 ATTTAACTAA
14798964 AAATGAATGAAAACTTT-AT
1 AAATGAATGAAAACTTTGAT
* *
14798983 AAATGAATGCCAAATTTTGAT
1 AAATGAATG-AAAACTTTGAT
14799004 -AATGAATGAAAA
1 AAATGAATGAAAA
14799016 AAATTCTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 12 0.43
20 14 0.50
21 2 0.07
ACGTcount: A:0.52, C:0.06, G:0.13, T:0.29
Consensus pattern (20 bp):
AAATGAATGAAAACTTTGAT
Found at i:14804427 original size:25 final size:25
Alignment explanation
Indices: 14804399--14804446 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
14804389 GTTTCAATGT
14804399 TCAATTT-AGTAATTAAGTTTTTTCC
1 TCAATTTGA-TAATTAAGTTTTTTCC
*
14804424 TCAATTTGATACTTAAGTTTTTT
1 TCAATTTGATAATTAAGTTTTTT
14804447 TCAATACGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.95
26 1 0.05
ACGTcount: A:0.27, C:0.10, G:0.08, T:0.54
Consensus pattern (25 bp):
TCAATTTGATAATTAAGTTTTTTCC
Found at i:14804450 original size:23 final size:23
Alignment explanation
Indices: 14804398--14804460 Score: 65
Period size: 25 Copynumber: 2.7 Consensus size: 23
14804388 TGTTTCAATG
*
14804398 TTCAATTT-AGTAATTAAGTTTTT
1 TTCAATTTGA-TACTTAAGTTTTT
14804421 TCCTCAATTTGATACTTAAGTTTTT
1 T--TCAATTTGATACTTAAGTTTTT
**
14804446 TTCAATACGATACTT
1 TTCAATTTGATACTT
14804461 GAGGTATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
23 13 0.38
25 20 0.59
26 1 0.03
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.51
Consensus pattern (23 bp):
TTCAATTTGATACTTAAGTTTTT
Found at i:14805736 original size:16 final size:16
Alignment explanation
Indices: 14805715--14805747 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
14805705 GAGAAAAAAA
14805715 ATATAAATATACATAT
1 ATATAAATATACATAT
*
14805731 ATATAAATATATATAT
1 ATATAAATATACATAT
14805747 A
1 A
14805748 AAATGAGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATAAATATACATAT
Found at i:14805900 original size:3 final size:3
Alignment explanation
Indices: 14805882--14805927 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
14805872 AATGATAGTC
* *
14805882 ATA ATA GTA TTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
14805928 CACTAAAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:14810195 original size:13 final size:13
Alignment explanation
Indices: 14810179--14810212 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14810169 GGCACACTTG
*
14810179 CGTGTGACACTGC
1 CGTGTGACACTAC
14810192 CGTGTGACACTAC
1 CGTGTGACACTAC
*
14810205 CTTGTGAC
1 CGTGTGAC
14810213 CTTACTCAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.29, G:0.26, T:0.26
Consensus pattern (13 bp):
CGTGTGACACTAC
Found at i:14826444 original size:29 final size:29
Alignment explanation
Indices: 14826355--14826448 Score: 93
Period size: 29 Copynumber: 3.2 Consensus size: 29
14826345 TAATCAACCA
**
14826355 ATGAAAAGGGATGGTGACGACCATCGAAT
1 ATGAAAAGGGATGGTTTCGACCATCGAAT
* * * *
14826384 ATGAAAAAGGATAGATTCAGTA--ATCGATT
1 ATGAAAAGGGATGGTTTC-G-ACCATCGAAT
*
14826413 ATGAAAAGGGATGGTTTCGACCATTGAAT
1 ATGAAAAGGGATGGTTTCGACCATCGAAT
14826442 ATGAAAA
1 ATGAAAA
14826449 AGGACAATTA
Statistics
Matches: 50, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
27 1 0.02
28 1 0.02
29 46 0.92
30 1 0.02
31 1 0.02
ACGTcount: A:0.41, C:0.10, G:0.26, T:0.23
Consensus pattern (29 bp):
ATGAAAAGGGATGGTTTCGACCATCGAAT
Found at i:14830483 original size:70 final size:67
Alignment explanation
Indices: 14830382--14830514 Score: 176
Period size: 70 Copynumber: 1.9 Consensus size: 67
14830372 TCCGAATAAG
* * ** *
14830382 AAAAGGCAAAACCACGTCGTTTTGATAAATGTTTACCTTTTCTAAAGTTAAAAGTCAAAATCATT
1 AAAAGGCAAAACCACATCGCTTTGATAAATGTTTA-CTCAT-T-AAGTTAAAAGGCAAAATCATT
14830447 AAGTT
63 AAGTT
* *
14830452 AAAAGGCAAAACTACATCGCTTTGATGAATGTTTACTCATTAAGTTAAAAGGCAAAATCATTA
1 AAAAGGCAAAACCACATCGCTTTGATAAATGTTTACTCATTAAGTTAAAAGGCAAAATCATTA
14830515 TATTGTTTAT
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
67 21 0.38
68 1 0.02
69 3 0.05
70 31 0.55
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (67 bp):
AAAAGGCAAAACCACATCGCTTTGATAAATGTTTACTCATTAAGTTAAAAGGCAAAATCATTAAG
TT
Found at i:14831318 original size:7 final size:7
Alignment explanation
Indices: 14831283--14831317 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
14831273 AGAGGAAAAT
14831283 GGTTGGC
1 GGTTGGC
14831290 GGTTGGC
1 GGTTGGC
*
14831297 GGTTTGC
1 GGTTGGC
14831304 GGTTGGC
1 GGTTGGC
*
14831311 AGTTGGC
1 GGTTGGC
14831318 ATATAATGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.03, C:0.14, G:0.51, T:0.31
Consensus pattern (7 bp):
GGTTGGC
Done.