Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 50 of 187
Found at i:14831754 original size:17 final size:17
Alignment explanation
Indices: 14831716--14831763 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
14831706 ACCCATCTAA
*
14831716 TAAAAAATAAAAAATATT
1 TAAAAAAT-AAAAATATC
14831734 TAAAGAAATAAAAA-ATC
1 TAAA-AAATAAAAATATC
14831751 TAAAAAAATAAAA
1 T-AAAAAATAAAA
14831764 TTCCTTAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 11 0.41
18 12 0.44
19 4 0.15
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (17 bp):
TAAAAAATAAAAATATC
Found at i:14831894 original size:20 final size:20
Alignment explanation
Indices: 14831860--14831916 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
14831850 AAAAAAAATT
14831860 TAAAGAATTATTTAAAATT-TA
1 TAAA-AATTA-TTAAAATTATA
* *
14831881 TAATAAATTATTAAACTTATC
1 TAA-AAATTATTAAAATTATA
14831902 TAAAAATTATTAAAA
1 TAAAAATTATTAAAA
14831917 ATAATGTCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 18 0.58
21 12 0.39
22 1 0.03
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (20 bp):
TAAAAATTATTAAAATTATA
Found at i:14832297 original size:9 final size:9
Alignment explanation
Indices: 14832273--14832325 Score: 72
Period size: 9 Copynumber: 5.8 Consensus size: 9
14832263 TTCAATAATC
14832273 TTTTTATAA
1 TTTTTATAA
14832282 TTTCTTATAA
1 TTT-TTATAA
*
14832292 TTCTTAATAA
1 TT-TTTATAA
14832302 TTTTTAT-A
1 TTTTTATAA
14832310 TTTTTATAA
1 TTTTTATAA
14832319 TTTTTAT
1 TTTTTAT
14832326 TATTGTTTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
8 8 0.21
9 15 0.38
10 15 0.38
11 1 0.03
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (9 bp):
TTTTTATAA
Found at i:14832318 original size:17 final size:18
Alignment explanation
Indices: 14832273--14832325 Score: 72
Period size: 17 Copynumber: 2.9 Consensus size: 18
14832263 TTCAATAATC
14832273 TTTTTATAATTTCTTATAA
1 TTTTTATAATTT-TTATAA
*
14832292 TTCTTAATAATTTTTAT-A
1 TT-TTTATAATTTTTATAA
14832310 TTTTTATAATTTTTAT
1 TTTTTATAATTTTTAT
14832326 TATTGTTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 13 0.42
18 3 0.10
19 6 0.19
20 9 0.29
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTTATAATTTTTATAA
Found at i:14834685 original size:24 final size:24
Alignment explanation
Indices: 14834657--14834708 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
14834647 TTTGTAGGTC
* *
14834657 AAATAAATTATGCTAATAAATGTT
1 AAATAAATTATACTAATAAATATT
* *
14834681 AAATATATTATATTAATAAATATT
1 AAATAAATTATACTAATAAATATT
14834705 AAAT
1 AAAT
14834709 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATATT
Found at i:14837307 original size:24 final size:24
Alignment explanation
Indices: 14837223--14837396 Score: 120
Period size: 24 Copynumber: 7.1 Consensus size: 24
14837213 ATACAGGTAT
* *
14837223 GCTCATACGAG-CATGTAGTCGAGAA
1 GCTCATACGAGCCA-ATA-TCGGGAA
* * * *
14837248 GCTCTTACGAGCCATGTAACGAGAA
1 GCTCATACGAGCCA-ATATCGGGAA
* *
14837273 GCTCTTGCGAGCCAATATCGGGAA
1 GCTCATACGAGCCAATATCGGGAA
* * *
14837297 GCTTATACGAGTC-ATAAACGGGAA
1 GCTCATACGAGCCAAT-ATCGGGAA
* * *
14837321 GCTCAAAAGAGCCAA-ATTCGAGAA
1 GCTCATACGAGCCAATA-TCGGGAA
**
14837345 GCTCACGCGAGCCAATATCGGGAA
1 GCTCATACGAGCCAATATCGGGAA
*
14837369 GCTCATGCGAGCCAATTATCGGGAA
1 GCTCATACGAGCCAA-TATCGGGAA
14837394 GCT
1 GCT
14837397 TGAGGGAGCC
Statistics
Matches: 121, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
23 3 0.02
24 69 0.57
25 43 0.36
26 6 0.05
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.18
Consensus pattern (24 bp):
GCTCATACGAGCCAATATCGGGAA
Found at i:14837333 original size:48 final size:48
Alignment explanation
Indices: 14837281--14837430 Score: 117
Period size: 48 Copynumber: 3.1 Consensus size: 48
14837271 AAGCTCTTGC
* *
14837281 GAGCCAATATCGGGAAGCTTATACGAGTC-ATAAACGGGAAGCTCAAAA
1 GAGCCAATATCGGGAAGCTTACACGAGCCAAT-AACGGGAAGCTCAAAA
* * * * ***
14837329 GAGCCAA-ATTCGAGAAGCTCACGCGAGCCAATATCGGGAAGCTCATGC
1 GAGCCAATA-TCGGGAAGCTTACACGAGCCAATAACGGGAAGCTCAAAA
** * *
14837377 GAGCCAATTATCGGGAAGCTTGA-GGGAGCCATATAACGGGATGCTCATAA
1 GAGCCAA-TATCGGGAAGCTT-ACACGAGCCA-ATAACGGGAAGCTCAAAA
14837427 GAGC
1 GAGC
14837431 TAAATAATGG
Statistics
Matches: 80, Mismatches: 16, Indels: 10
0.75 0.15 0.09
Matches are distributed among these distances:
47 1 0.01
48 41 0.51
49 18 0.22
50 20 0.25
ACGTcount: A:0.34, C:0.21, G:0.28, T:0.17
Consensus pattern (48 bp):
GAGCCAATATCGGGAAGCTTACACGAGCCAATAACGGGAAGCTCAAAA
Found at i:14837407 original size:25 final size:24
Alignment explanation
Indices: 14837270--14837396 Score: 123
Period size: 24 Copynumber: 5.2 Consensus size: 24
14837260 CATGTAACGA
*
14837270 GAAGCTCTTGCGAGCCAATATCGG
1 GAAGCTCATGCGAGCCAATATCGG
* * * *
14837294 GAAGCTTATACGAGTC-ATAAACGG
1 GAAGCTCATGCGAGCCAAT-ATCGG
*** *
14837318 GAAGCTCAAAAGAGCCAA-ATTCGA
1 GAAGCTCATGCGAGCCAATA-TCGG
*
14837342 GAAGCTCACGCGAGCCAATATCGG
1 GAAGCTCATGCGAGCCAATATCGG
14837366 GAAGCTCATGCGAGCCAATTATCGG
1 GAAGCTCATGCGAGCCAA-TATCGG
14837391 GAAGCT
1 GAAGCT
14837397 TGAGGGAGCC
Statistics
Matches: 82, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
23 3 0.04
24 65 0.79
25 14 0.17
ACGTcount: A:0.33, C:0.23, G:0.27, T:0.17
Consensus pattern (24 bp):
GAAGCTCATGCGAGCCAATATCGG
Found at i:14844684 original size:24 final size:25
Alignment explanation
Indices: 14844584--14844689 Score: 99
Period size: 25 Copynumber: 4.3 Consensus size: 25
14844574 ATGTAGTCGA
* * * *
14844584 GAAGCTCTTACGAGCCATGTAACGG
1 GAAGCTCATGCGAGCCATATAACAG
* * *
14844609 GAAGCTCATGTGAGTCATATAACAA
1 GAAGCTCATGCGAGCCATATAACAG
* *
14844634 GAAGCTCCTGCGAGCCA-ATATCAG
1 GAAGCTCATGCGAGCCATATAACAG
* *
14844658 GAAGCTTATGCGAGCCATA-AACGG
1 GAAGCTCATGCGAGCCATATAACAG
14844682 GAAGCTCA
1 GAAGCTCA
14844690 ATGGAGCTAA
Statistics
Matches: 63, Mismatches: 17, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
24 30 0.48
25 33 0.52
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (25 bp):
GAAGCTCATGCGAGCCATATAACAG
Found at i:14844818 original size:25 final size:25
Alignment explanation
Indices: 14844730--14844842 Score: 102
Period size: 25 Copynumber: 4.5 Consensus size: 25
14844720 CCAATATTAA
* *
14844730 GAAGCTCATGAGAGCTAATTATCGG
1 GAAGCTCATAAGAGCCAATTATCGG
* *
14844755 GAAACTCAAAAGAGCC-ATTAATCGG
1 GAAGCTCATAAGAGCCAATT-ATCGG
* *
14844780 AAAGCTCATAAGAGCCAAATATCGG
1 GAAGCTCATAAGAGCCAATTATCGG
* * * * *
14844805 GAAGCTCGTGAGAGTCATTTAACGG
1 GAAGCTCATAAGAGCCAATTATCGG
*
14844830 GATGCTCATAAGA
1 GAAGCTCATAAGA
14844843 TCTAAATAAC
Statistics
Matches: 68, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
24 3 0.04
25 63 0.93
26 2 0.03
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (25 bp):
GAAGCTCATAAGAGCCAATTATCGG
Found at i:14851582 original size:37 final size:37
Alignment explanation
Indices: 14851527--14851600 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 37
14851517 ATTTTTATTG
* * * *
14851527 TATTTGAATTTTTAAATAAGTTAA-TACAATTTAATTA
1 TATTTAAAATTTTAAATAA-TGAATTAAAATTTAATTA
*
14851564 TATTTAAAATTTTGAATAATGAATTAAAATTTAATTA
1 TATTTAAAATTTTAAATAATGAATTAAAATTTAATTA
14851601 AAATAATTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
36 3 0.10
37 28 0.90
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.47
Consensus pattern (37 bp):
TATTTAAAATTTTAAATAATGAATTAAAATTTAATTA
Found at i:14852220 original size:20 final size:19
Alignment explanation
Indices: 14852182--14852219 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14852172 GTGATAGAAA
14852182 GCTGACGTGGGTCTTTTTT
1 GCTGACGTGGGTCTTTTTT
14852201 GCTGACGTGGGTCTTTTTT
1 GCTGACGTGGGTCTTTTTT
14852220 TATTCGTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.05, C:0.16, G:0.32, T:0.47
Consensus pattern (19 bp):
GCTGACGTGGGTCTTTTTT
Found at i:14852377 original size:60 final size:60
Alignment explanation
Indices: 14852282--14852412 Score: 145
Period size: 60 Copynumber: 2.2 Consensus size: 60
14852272 TGACACTAAA
* * *
14852282 TCTAAAAAGTTCAACAAATTTAACCCTCAATATTTACAAAATTTGTCATTTTAGTCCAAAT
1 TCTAAAAA-TTCAACAAATTTAACCCTCAAGATTTACAAAATTTCTCAATTTAGTCCAAAT
* * * * ** *
14852343 TCTAAAAATTCAATAAATTTAGCTCTCAGGATTTATTAAATTTCTCAATTTAGTTCAAAT
1 TCTAAAAATTCAACAAATTTAACCCTCAAGATTTACAAAATTTCTCAATTTAGTCCAAAT
* *
14852403 TTTGAAAATT
1 TCTAAAAATT
14852413 TCAAAAGGGA
Statistics
Matches: 58, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
60 50 0.86
61 8 0.14
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.40
Consensus pattern (60 bp):
TCTAAAAATTCAACAAATTTAACCCTCAAGATTTACAAAATTTCTCAATTTAGTCCAAAT
Found at i:14854145 original size:22 final size:22
Alignment explanation
Indices: 14854097--14854139 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14854087 AGCCTTTTAT
* *
14854097 GGGACATTTGATAGCCCTTCGA
1 GGGACATTTGAAAGCCCTTAGA
*
14854119 GGGACGTTTGAAAGCCCTTAG
1 GGGACATTTGAAAGCCCTTAG
14854140 CAGGACAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (22 bp):
GGGACATTTGAAAGCCCTTAGA
Found at i:14854240 original size:27 final size:26
Alignment explanation
Indices: 14854210--14854295 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 26
14854200 ATCTTATGCT
*
14854210 GGAAGTCCGTAATGACTATCTAATGTG
1 GGAAGTCCATAA-GACTATCTAATGTG
* **
14854237 GGAAGTCCATAAGACTATCTTATGCA
1 GGAAGTCCATAAGACTATCTAATGTG
*
14854263 GGAAGTCCACAAGGACTATCTAATGTG
1 GGAAGTCCATAA-GACTATCTAATGTG
14854290 GGAAGT
1 GGAAGT
14854296 TCTTCAGGAC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
26 22 0.44
27 28 0.56
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (26 bp):
GGAAGTCCATAAGACTATCTAATGTG
Found at i:14854266 original size:26 final size:27
Alignment explanation
Indices: 14854194--14854338 Score: 105
Period size: 27 Copynumber: 5.4 Consensus size: 27
14854184 GGAAGTTCGT
* * *
14854194 AGGATTATCTTATGCTGGAAGTCCGTA
1 AGGACTATCTTATGCAGGAAGTCCATA
* * **
14854221 ATGACTATCTAATGTGGGAAGTCCATA
1 AGGACTATCTTATGCAGGAAGTCCATA
*
14854248 A-GACTATCTTATGCAGGAAGTCCACA
1 AGGACTATCTTATGCAGGAAGTCCATA
* ** * * *
14854274 AGGACTATCTAATGTGGGAAGTTCTTC
1 AGGACTATCTTATGCAGGAAGTCCATA
* * * *
14854301 AGGACTATCTT-TGGTAGAAAGTCCGTC
1 AGGACTATCTTAT-GCAGGAAGTCCATA
14854328 AGGACTATCTT
1 AGGACTATCTT
14854339 TTGTGGAAGG
Statistics
Matches: 94, Mismatches: 22, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
26 23 0.24
27 71 0.76
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.30
Consensus pattern (27 bp):
AGGACTATCTTATGCAGGAAGTCCATA
Found at i:14854322 original size:27 final size:28
Alignment explanation
Indices: 14854299--14854400 Score: 95
Period size: 27 Copynumber: 3.7 Consensus size: 28
14854289 GGGAAGTTCT
**
14854299 TCAGGACTATCTTTGGTAGAAA-GTCCG
1 TCAGGACTATCTTTGGTAGAAAGGTCTA
* * *
14854326 TCAGGACTATCTTTTGT-GGAAGGTCTG
1 TCAGGACTATCTTTGGTAGAAAGGTCTA
* *
14854353 TCATGACTAT-TTTATGTAG-AAGGTCTA
1 TCAGGACTATCTTT-GGTAGAAAGGTCTA
14854380 TCAGGACTATCTTTTGGTAGA
1 TCAGGACTATC-TTTGGTAGA
14854401 GGATCGTGAA
Statistics
Matches: 62, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
26 6 0.10
27 48 0.77
28 5 0.08
29 3 0.05
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.36
Consensus pattern (28 bp):
TCAGGACTATCTTTGGTAGAAAGGTCTA
Found at i:14854332 original size:54 final size:54
Alignment explanation
Indices: 14854178--14854391 Score: 161
Period size: 53 Copynumber: 4.0 Consensus size: 54
14854168 CATTACCGTA
* * * * * * *
14854178 AATGTAGGAAGTTCGTAGGATTATCTTATGCT-GGAAGTCCGTAATGACTATCT
1 AATGTGGGAAGTTCTTAGGACTATCTTATGGTAGAAAGTCCGTCAGGACTATCT
* * * * * *
14854231 AATGTGGGAAGTCCATAAGACTATCTTAT-GCAGGAAGTCC-ACAAGGACTATCT
1 AATGTGGGAAGTTCTTAGGACTATCTTATGGTAGAAAGTCCGTC-AGGACTATCT
14854284 AATGTGGGAAGTTCTTCAGGACTATCTT-TGGTAGAAAGTCCGTCAGGACTATCT
1 AATGTGGGAAGTTCTT-AGGACTATCTTATGGTAGAAAGTCCGTCAGGACTATCT
** * * * * **
14854338 TTTGT-GGAAGGTCTGTCATGACTATTTTAT-GTAGAAGGTCTATCAGGACTATCT
1 AATGTGGGAAGTTCT-T-AGGACTATCTTATGGTAGAAAGTCCGTCAGGACTATCT
14854392 TTTGGTAGAG
Statistics
Matches: 130, Mismatches: 24, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
53 64 0.49
54 64 0.49
55 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.32
Consensus pattern (54 bp):
AATGTGGGAAGTTCTTAGGACTATCTTATGGTAGAAAGTCCGTCAGGACTATCT
Found at i:14854392 original size:54 final size:54
Alignment explanation
Indices: 14854265--14854395 Score: 142
Period size: 54 Copynumber: 2.4 Consensus size: 54
14854255 CTTATGCAGG
** *
14854265 AAGTCCA-CAAGGACTATCTAATGTGGGAAGTTCTTCAGGACTATCTTTGGTAGA
1 AAGTCCATC-AGGACTATCTTTTGTGGGAAGGTCTTCAGGACTATCTTTGGTAGA
* * *
14854319 AAGTCCGTCAGGACTATCTTTTGT-GGAAGGTCTGTCATGACTAT-TTTATGTAGA
1 AAGTCCATCAGGACTATCTTTTGTGGGAAGGTCT-TCAGGACTATCTTT-GGTAGA
* *
14854373 AGGTCTATCAGGACTATCTTTTG
1 AAGTCCATCAGGACTATCTTTTG
14854396 GTAGAGGATC
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
53 11 0.17
54 53 0.82
55 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (54 bp):
AAGTCCATCAGGACTATCTTTTGTGGGAAGGTCTTCAGGACTATCTTTGGTAGA
Found at i:14856470 original size:18 final size:17
Alignment explanation
Indices: 14856438--14856471 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14856428 CGTCTTAATG
14856438 TGAAAAAATTGAAAATT
1 TGAAAAAATTGAAAATT
*
14856455 TGAAAAGAATTTAAAAT
1 TGAAAA-AATTGAAAAT
14856472 ACGATCCCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (17 bp):
TGAAAAAATTGAAAATT
Found at i:14856998 original size:21 final size:21
Alignment explanation
Indices: 14856961--14857000 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14856951 CTAACAACCA
*
14856961 AATAAAATAACTAATAACATG
1 AATAAAACAACTAATAACATG
14856982 AATAATAACAACT-ATAACA
1 AATAA-AACAACTAATAACA
14857001 ATAATGGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.62, C:0.12, G:0.03, T:0.23
Consensus pattern (21 bp):
AATAAAACAACTAATAACATG
Found at i:14858477 original size:23 final size:22
Alignment explanation
Indices: 14858426--14858487 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
14858416 CTGAACTTTA
* *
14858426 TTTTTATTTTGGGTTCGTTTGAT
1 TTTTTATTTT-GTTTTGTTTGAT
*
14858449 TTTTTATTTTGTTTTGTTTTAT
1 TTTTTATTTTGTTTTGTTTGAT
*
14858471 TTATTTATGTTTATTTT
1 TT-TTTAT-TTTGTTTT
14858488 TTTCTGTTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 11 0.33
23 15 0.45
24 7 0.21
ACGTcount: A:0.11, C:0.02, G:0.13, T:0.74
Consensus pattern (22 bp):
TTTTTATTTTGTTTTGTTTGAT
Found at i:14859004 original size:140 final size:139
Alignment explanation
Indices: 14858744--14859196 Score: 559
Period size: 140 Copynumber: 3.2 Consensus size: 139
14858734 GTAGCTTCGA
* * * * * *
14858744 TCTACTCCGCTGCAACTTCAAGTAGATAAGGATGGTGGCTTTAATCTGCTCCTCTACAACTTCAA
1 TCTACTCCGCTACAACTTCAGGGAGATAAGGCTGGTGGCTTTAATCTGTTCCT-TGCAACTTCAA
* * * * *
14858809 GAAGATAAGATTTGTTGTCTGTAGCTTTAATCTATTCTACTGCAACGCCAAGGAAATAAGATTCG
65 GAAGATAAGATTTGCTATCTGTAGCTTTAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCG
14858874 CTGTCTTCAG
130 CTGTCTTCAG
* * *
14858884 TCTACTCCGCTACAACTTCAGGGGGATAAGGCTAGTGGCTTTAATTTGTTCCTTTGCAACTTCAA
1 TCTACTCCGCTACAACTTCAGGGAGATAAGGCTGGTGGCTTTAATCTGTTCC-TTGCAACTTCAA
* * *
14858949 GGAGATAAGATTTGCTATCTGTAGCTTTAATCTGTTCCACTACAATGCCAGGGAAATAAGATTCG
65 GAAGATAAGATTTGCTATCTGTAGCTTTAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCG
* *
14859014 CTATCTTCTG
130 CTGTCTTCAG
* *
14859024 TCTGCTTCGCTACAACTTCAGGGAGATAAGGCTGGTGGCTTTAATCTGCTTCAC-TGCAACTTC-
1 TCTACTCCGCTACAACTTCAGGGAGATAAGGCTGGTGGCTTTAATCTG-TTC-CTTGCAACTTCA
* * * *
14859087 AGAAAGATAAGATTTGCCGTAACTTGTAGCTTTAATCTGTTCCATTGCAATGCTACGGAAATAAG
64 AG-AAGATAAGATTTG-C-TATC-TGTAGCTTTAATCTGTTCCACTGCAATGCCAAGGAAATAAG
*
14859152 ATTCGCTGTCTTTAG
125 ATTCGCTGTCTTCAG
* * *
14859167 TTTGCTTCGCTACAACTTCAGGGAGATAAG
1 TCTACTCCGCTACAACTTCAGGGAGATAAG
14859197 ACTCGTAACT
Statistics
Matches: 272, Mismatches: 34, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
139 2 0.01
140 183 0.67
141 5 0.02
142 4 0.01
143 78 0.29
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (139 bp):
TCTACTCCGCTACAACTTCAGGGAGATAAGGCTGGTGGCTTTAATCTGTTCCTTGCAACTTCAAG
AAGATAAGATTTGCTATCTGTAGCTTTAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGC
TGTCTTCAG
Found at i:14867412 original size:29 final size:28
Alignment explanation
Indices: 14867379--14867436 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 28
14867369 GTGTATTTGG
14867379 TGGAGTAAAACTTGGAGAATAGAGCGGT
1 TGGAGTAAAACTTGGAGAATAGAGCGGT
*
14867407 TNGGAGTAAAACTTGGAGGATAGAGCGGT
1 T-GGAGTAAAACTTGGAGAATAGAGCGGT
14867436 T
1 T
14867437 CCTCATTATC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 1 0.04
29 27 0.96
ACGTcount: A:0.33, C:0.07, G:0.36, T:0.22
Consensus pattern (28 bp):
TGGAGTAAAACTTGGAGAATAGAGCGGT
Found at i:14867788 original size:19 final size:19
Alignment explanation
Indices: 14867764--14867809 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
14867754 GGTGGACTTT
* *
14867764 AATGCATATG-ATGTAATG
1 AATGCAAATGCATGAAATG
14867782 CAATGCAAATGCATGAAATG
1 -AATGCAAATGCATGAAATG
14867802 AATGCAAA
1 AATGCAAA
14867810 AAAGCATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.24
Consensus pattern (19 bp):
AATGCAAATGCATGAAATG
Found at i:14870393 original size:18 final size:18
Alignment explanation
Indices: 14870370--14870410 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
14870360 AGGTGAAGAC
14870370 CTCACGAAGGAATAGTTT
1 CTCACGAAGGAATAGTTT
14870388 CTCACGAAGGAATAGTTT
1 CTCACGAAGGAATAGTTT
14870406 CTCAC
1 CTCAC
14870411 TCTCACTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.27
Consensus pattern (18 bp):
CTCACGAAGGAATAGTTT
Found at i:14872907 original size:14 final size:14
Alignment explanation
Indices: 14872890--14872920 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
14872880 GATTTTTGAT
*
14872890 TTTATTTTGGTTTA
1 TTTATTTGGGTTTA
14872904 TTTATTTGGGTTTA
1 TTTATTTGGGTTTA
14872918 TTT
1 TTT
14872921 TTTCTGTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.00, G:0.16, T:0.71
Consensus pattern (14 bp):
TTTATTTGGGTTTA
Found at i:14874782 original size:191 final size:191
Alignment explanation
Indices: 14874454--14874845 Score: 624
Period size: 191 Copynumber: 2.1 Consensus size: 191
14874444 TGCAAGTTTT
* * * *
14874454 TATA-AAACATCCTACCCATCACCGCTACACTTCAAAAAGATTTCCCGAGAACTCATCCATCCAA
1 TATATAAACATCCTACCCATCACCGCTACACTCCAAAAAGAGTTCCCCAAAACTCATCCATCCAA
* * * * *
14874518 ACACTCCAATGTGGATGAAGCCACCAATATTTGCAGACAATCTATCATGTAGGTTGTAGACGAAG
66 ACACTCCAATGTAGACGAAGCCACCAATATTTGCAAACAAGCTACCATGTAGGTTGTAGACGAAG
* *
14874583 CCACCAATTCCTCCTCCTTATAATATCCCACCCCATGCATGTGATATGATCATAATGAACA
131 CCACCAATTCATCCTCCTTATAATATCCCACCCCATGCATGTGATATGACCATAATGAACA
* *
14874644 TATGTAAACATCCTACCCATCATCGCTACACTCCAAAAAGAGTTCCCCAAAACTCATCCATCCAA
1 TATATAAACATCCTACCCATCACCGCTACACTCCAAAAAGAGTTCCCCAAAACTCATCCATCCAA
*
14874709 ACACTCCAATGTAGACGAAGCCACCAATATTTGCAAACAAGCTACCATGTAGGTTGTGGACGAAG
66 ACACTCCAATGTAGACGAAGCCACCAATATTTGCAAACAAGCTACCATGTAGGTTGTAGACGAAG
* * *
14874774 CCACCAATTCATCGTCCTTATAATATCTCACCCCATGCTTGTGATATGACCATAATGAACA
131 CCACCAATTCATCCTCCTTATAATATCCCACCCCATGCATGTGATATGACCATAATGAACA
14874835 TATATAAACAT
1 TATATAAACAT
14874846 TTTACTCATC
Statistics
Matches: 183, Mismatches: 18, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
190 3 0.02
191 180 0.98
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.24
Consensus pattern (191 bp):
TATATAAACATCCTACCCATCACCGCTACACTCCAAAAAGAGTTCCCCAAAACTCATCCATCCAA
ACACTCCAATGTAGACGAAGCCACCAATATTTGCAAACAAGCTACCATGTAGGTTGTAGACGAAG
CCACCAATTCATCCTCCTTATAATATCCCACCCCATGCATGTGATATGACCATAATGAACA
Found at i:14874935 original size:38 final size:38
Alignment explanation
Indices: 14874885--14874972 Score: 131
Period size: 38 Copynumber: 2.3 Consensus size: 38
14874875 ATTGGGCATG
*
14874885 TTAATCATGCAAATCGAATAATATCGTATAAGGCATGTT
1 TTAA-CATGCAAATCGAATAATATCATATAAGGCATGTT
* * *
14874924 TTAACATGCAAATCGGATAATTTCATATAGGGCATGTT
1 TTAACATGCAAATCGAATAATATCATATAAGGCATGTT
14874962 TTAACATGCAA
1 TTAACATGCAA
14874973 CCAAATCTCA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
38 41 0.91
39 4 0.09
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.33
Consensus pattern (38 bp):
TTAACATGCAAATCGAATAATATCATATAAGGCATGTT
Found at i:14876228 original size:43 final size:42
Alignment explanation
Indices: 14876113--14876294 Score: 204
Period size: 43 Copynumber: 4.3 Consensus size: 42
14876103 TTATTTCTAT
* * *
14876113 AAACGTCGCTAAAGGTCATGTTCTTTAGCGGCAC-TTTCACAA
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTC-CAC
14876155 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCTAC
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCC-AC
* * * *
14876198 AAATGCTGTTAAAAGTCATGTTCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTT-CCAC
** * * *
14876241 AAACATCGCTGAAGGTCATGTTCTTTAGCTGCACTTTTTCCAC
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGC-TTTTCCAC
*
14876284 AAACGTCGCTA
1 AAACGCCGCTA
14876295 TTGTTTGGTA
Statistics
Matches: 118, Mismatches: 18, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
42 33 0.28
43 79 0.67
44 6 0.05
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (42 bp):
AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCAC
Found at i:14876365 original size:44 final size:44
Alignment explanation
Indices: 14876263--14876366 Score: 145
Period size: 44 Copynumber: 2.4 Consensus size: 44
14876253 AGGTCATGTT
* * * *
14876263 CTTTAGCTGCACTTTTTCCACAAACGTCGCTATTGTTTGGTAAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATTGTTTGGTAAC
* *
14876307 CTTTAGCGGCGCTTTTCCCACAAATGCCGCTATTGTTTGGTGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATTGTTTGGTAAC
*
14876351 CTTTAGCGGTGCTTTT
1 CTTTAGCGGCGCTTTT
14876367 TCTGAAAACG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 53 1.00
ACGTcount: A:0.16, C:0.25, G:0.20, T:0.38
Consensus pattern (44 bp):
CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATTGTTTGGTAAC
Found at i:14876716 original size:21 final size:21
Alignment explanation
Indices: 14876687--14876733 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
14876677 TTCTACTCTG
*
14876687 CTCTACTTCCCTCACTGCAGC
1 CTCTGCTTCCCTCACTGCAGC
* *
14876708 CTCTGCTTCCCTCGCTGCCGC
1 CTCTGCTTCCCTCACTGCAGC
14876729 CTCTG
1 CTCTG
14876734 ATTTAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.06, C:0.49, G:0.15, T:0.30
Consensus pattern (21 bp):
CTCTGCTTCCCTCACTGCAGC
Found at i:14881865 original size:11 final size:11
Alignment explanation
Indices: 14881849--14881882 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
14881839 TAAAACAAAT
14881849 AAAGAATAGAA
1 AAAGAATAGAA
*
14881860 AAAGAAAAGAA
1 AAAGAATAGAA
*
14881871 ATAGAATAGAA
1 AAAGAATAGAA
14881882 A
1 A
14881883 CAGAGAAGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.09
Consensus pattern (11 bp):
AAAGAATAGAA
Found at i:14895970 original size:18 final size:22
Alignment explanation
Indices: 14895947--14895991 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 22
14895937 TATGAGTGAG
14895947 ATAATT-AA-TTAG-ACTTA-A
1 ATAATTAAATTTAGTACTTATA
14895965 ATAATTAAATTTAGTACTTATA
1 ATAATTAAATTTAGTACTTATA
14895987 ATAAT
1 ATAAT
14895992 CGATTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.26
19 2 0.09
20 4 0.17
21 5 0.22
22 6 0.26
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.42
Consensus pattern (22 bp):
ATAATTAAATTTAGTACTTATA
Found at i:14902311 original size:18 final size:18
Alignment explanation
Indices: 14902288--14902323 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
14902278 AACTTGGGTT
*
14902288 GGGTTTCGATAAATCTAA
1 GGGTTTCAATAAATCTAA
14902306 GGGTTTCAATAAATCTAA
1 GGGTTTCAATAAATCTAA
14902324 AGTATGCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.33
Consensus pattern (18 bp):
GGGTTTCAATAAATCTAA
Found at i:14904001 original size:20 final size:20
Alignment explanation
Indices: 14903968--14904007 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
14903958 AGCGCATGAG
* * *
14903968 AGGATGTCTTTGATGGGATA
1 AGGATGTATATGATAGGATA
14903988 AGGATGTATATGATAGGATA
1 AGGATGTATATGATAGGATA
14904008 GATCTTGTCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.33, T:0.33
Consensus pattern (20 bp):
AGGATGTATATGATAGGATA
Found at i:14911338 original size:31 final size:31
Alignment explanation
Indices: 14911302--14911366 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
14911292 AGTAAATAAT
14911302 GATCAATAAAATGTGTATTTACTAAGTAAAG
1 GATCAATAAAATGTGTATTTACTAAGTAAAG
14911333 GATCAATAAAATGTGTATTTACTAAGTAAAG
1 GATCAATAAAATGTGTATTTACTAAGTAAAG
14911364 GAT
1 GAT
14911367 TCCGAAAGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.45, C:0.06, G:0.17, T:0.32
Consensus pattern (31 bp):
GATCAATAAAATGTGTATTTACTAAGTAAAG
Found at i:14914666 original size:22 final size:22
Alignment explanation
Indices: 14914635--14914679 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
14914625 GGATTAGGGG
*
14914635 TGTTATAGAAATATACTAATCT
1 TGTTACAGAAATATACTAATCT
*
14914657 TGTTACAGAAATCTACTAATCT
1 TGTTACAGAAATATACTAATCT
14914679 T
1 T
14914680 ATGGTTGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (22 bp):
TGTTACAGAAATATACTAATCT
Found at i:14920269 original size:50 final size:50
Alignment explanation
Indices: 14920035--14920269 Score: 255
Period size: 50 Copynumber: 4.6 Consensus size: 50
14920025 CGATCTTGTA
* * *
14920035 TAAGACCATGTCTGGGATATGGCATTGACATCGATG-TGTGA-G--CCAGTG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGA-GATGAGAGGTCCCA-TG
* * * *
14920083 TAAGACCATGTCTAGGACATGGCATTGACATTATTGAAATTATGAGAGGTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGC---ATCG--A-GATGAGAGGTCCCATG
* * *
14920139 TAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGGT-CCATCG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGAGGTCCCAT-G
14920189 TAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGAGGTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGAGGTCCCATG
*
14920239 TAAGACCATGTCTGGGACATGGCTTTGGCAT
1 TAAGACCATGTCTGGGACATGGCATTGGCAT
14920270 GTTATTATCA
Statistics
Matches: 162, Mismatches: 14, Indels: 20
0.83 0.07 0.10
Matches are distributed among these distances:
48 27 0.17
49 4 0.02
50 82 0.51
51 8 0.05
53 4 0.02
54 4 0.02
55 1 0.01
56 29 0.18
57 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGAGGTCCCATG
Found at i:14933377 original size:41 final size:41
Alignment explanation
Indices: 14933320--14933402 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
14933310 CCAAGCGATT
*
14933320 AATCAATATTCCCAAGCATATAAAAGATCAAGTGAGGTAAC
1 AATCAATATTCCCAAGCATATAAAAGATCAAGTAAGGTAAC
14933361 AATCAATATTCCCAAGCATATAAAAGATCAAGTAAGGTAAC
1 AATCAATATTCCCAAGCATATAAAAGATCAAGTAAGGTAAC
14933402 A
1 A
14933403 GAGTATTTCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.48, C:0.17, G:0.13, T:0.22
Consensus pattern (41 bp):
AATCAATATTCCCAAGCATATAAAAGATCAAGTAAGGTAAC
Found at i:14944036 original size:22 final size:22
Alignment explanation
Indices: 14944011--14944052 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14944001 TTTAAATAGG
*
14944011 AAAATAAATAAACCAAAATGTA
1 AAAATAAATAAACAAAAATGTA
* *
14944033 AAAATAGATTAACAAAAATG
1 AAAATAAATAAACAAAAATG
14944053 GCTTTTTAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.19
Consensus pattern (22 bp):
AAAATAAATAAACAAAAATGTA
Found at i:14945758 original size:20 final size:22
Alignment explanation
Indices: 14945735--14945782 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
14945725 CAAATTTGTC
*
14945735 AAAAATAA-T-CAAAATTCACT
1 AAAAATAATTGCAAAATTAACT
*
14945755 AAAAATAATTGTAAAATTAACT
1 AAAAATAATTGCAAAATTAACT
14945777 AAAAAT
1 AAAAAT
14945783 TAACATGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 8 0.33
21 1 0.04
22 15 0.62
ACGTcount: A:0.62, C:0.08, G:0.02, T:0.27
Consensus pattern (22 bp):
AAAAATAATTGCAAAATTAACT
Found at i:14956947 original size:12 final size:12
Alignment explanation
Indices: 14956930--14956959 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14956920 TTCCTATTTT
14956930 TACATTCAATTC
1 TACATTCAATTC
*
14956942 TACATTCAATTT
1 TACATTCAATTC
14956954 TACATT
1 TACATT
14956960 TTATTCAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (12 bp):
TACATTCAATTC
Found at i:14962257 original size:20 final size:20
Alignment explanation
Indices: 14962214--14962262 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
14962204 ACGGTGCAGC
* **
14962214 AGGAATCACTGTTGTGTTNC
1 AGGAATCACTGTTGCGTTAA
14962234 AGGAATCACTGTTGCGTTAA
1 AGGAATCACTGTTGCGTTAA
14962254 AGGACATCA
1 AGGA-ATCA
14962263 TTCCAGATGG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.29
Consensus pattern (20 bp):
AGGAATCACTGTTGCGTTAA
Found at i:14966690 original size:22 final size:21
Alignment explanation
Indices: 14966664--14966707 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
14966654 AAAATCCATT
*
14966664 TACTTTAAAAATTATATTCAAA
1 TACTTT-AAAATTAAATTCAAA
*
14966686 TACTTTGAAATTAAATTCAAA
1 TACTTTAAAATTAAATTCAAA
14966707 T
1 T
14966708 TGAATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.41
Consensus pattern (21 bp):
TACTTTAAAATTAAATTCAAA
Found at i:14975523 original size:25 final size:26
Alignment explanation
Indices: 14975469--14975530 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 26
14975459 AACCATGTAA
**
14975469 CGGGAAGCTCATGTGAGCTGTATAAT
1 CGGGAAGCTCATGTGAGCTCAATAAT
* *
14975495 -GGGAAGCTCTTGTGAGC-CAATTAT
1 CGGGAAGCTCATGTGAGCTCAATAAT
14975519 CGGGAAGCTCAT
1 CGGGAAGCTCAT
14975531 ACGAGCCATA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 4 0.13
25 26 0.87
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (26 bp):
CGGGAAGCTCATGTGAGCTCAATAAT
Found at i:14985450 original size:45 final size:45
Alignment explanation
Indices: 14985386--14985479 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
14985376 AGCAGATACT
* * *
14985386 CGGTGGATTTAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
14985431 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
14985476 CGGT
1 CGGT
14985480 TCATATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:14985544 original size:51 final size:50
Alignment explanation
Indices: 14985485--14985671 Score: 187
Period size: 51 Copynumber: 3.7 Consensus size: 50
14985475 TCGGTTCATA
* * * *
14985485 TAGTAGCTTGTACATAGTACTACACATGTGACCATTACCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATCCGGTACACG
* * * * * *
14985536 TAGTAGCTTGCACATAGTACTACACACGTGATCGAAACTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATCCGGTACACG
* * * * * *
14985587 TAGTAGCCTGTAAATAGTACTACACATGCGACC-TATCATTCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TCCGGTACACG
*
14985637 TAGTAGCCTGCACATAGTAATACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
14985672 CACTTTCAAT
Statistics
Matches: 108, Mismatches: 25, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
49 2 0.02
50 37 0.34
51 67 0.62
52 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATCCGGTACACG
Found at i:14985654 original size:101 final size:101
Alignment explanation
Indices: 14985484--14985667 Score: 271
Period size: 101 Copynumber: 1.8 Consensus size: 101
14985474 TTCGGTTCAT
* * * *
14985484 ATAGTAGCTTGTACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCTTGCAC
1 ATAGTAGCCTGTAAATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTGCAC
*
14985549 ATAGTACTACACACGTGATCGAAACTATCCGGTACGC
65 ATAGTAATACACACGTGATCGAAACTATCCGGTACGC
* * *
14985586 ATAGTAGCCTGTAAATAGTACTACACATGCGACC-TATCATTCTGGTACACGTAGTAGCCTGCAC
1 ATAGTAGCCTGTAAATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTGCAC
14985650 ATAGTAATACACACGTGA
65 ATAGTAATACACACGTGA
14985668 CCATCACTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
100 4 0.05
101 38 0.52
102 31 0.42
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (101 bp):
ATAGTAGCCTGTAAATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTGCACA
TAGTAATACACACGTGATCGAAACTATCCGGTACGC
Found at i:14994402 original size:13 final size:13
Alignment explanation
Indices: 14994375--14994422 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
14994365 ATGTTATTTC
*
14994375 TCAAAAGCACTTT
1 TCAAAAGCACCTT
* *
14994388 TCCACAGCACCTT
1 TCAAAAGCACCTT
14994401 TCAAAAGCACCTT
1 TCAAAAGCACCTT
*
14994414 ACAAAAGCA
1 TCAAAAGCA
14994423 TTGCTAAACT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.40, C:0.31, G:0.08, T:0.21
Consensus pattern (13 bp):
TCAAAAGCACCTT
Found at i:14994554 original size:11 final size:11
Alignment explanation
Indices: 14994538--14994564 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
14994528 AATCATGTTT
14994538 CCATTACATTC
1 CCATTACATTC
14994549 CCATTACATTC
1 CCATTACATTC
14994560 CCATT
1 CCATT
14994565 TCAATAGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.37, G:0.00, T:0.37
Consensus pattern (11 bp):
CCATTACATTC
Found at i:15020980 original size:34 final size:35
Alignment explanation
Indices: 15020925--15020991 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
15020915 CAAACACCAG
*
15020925 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
15020960 AAAACATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
15020992 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:15022797 original size:15 final size:15
Alignment explanation
Indices: 15022761--15022799 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
15022751 GGGAAATATA
15022761 CATTTATTAAGTCGT
1 CATTTATTAAGTCGT
*
15022776 CAATTATTAAGTC-T
1 CATTTATTAAGTCGT
15022790 CATTTTATTA
1 CA-TTTATTA
15022800 TTGATAGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 3 0.14
15 18 0.86
ACGTcount: A:0.31, C:0.13, G:0.08, T:0.49
Consensus pattern (15 bp):
CATTTATTAAGTCGT
Found at i:15024312 original size:13 final size:13
Alignment explanation
Indices: 15024294--15024343 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
15024284 CTTAAATCAA
15024294 ACTTTTCAAAAAC
1 ACTTTTCAAAAAC
***
15024307 ACTTTTCCCCAAC
1 ACTTTTCAAAAAC
*
15024320 ACCTTTCAAAAAC
1 ACTTTTCAAAAAC
15024333 ACTTTTCAAAA
1 ACTTTTCAAAA
15024344 GAATTGTTAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.40, C:0.30, G:0.00, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAAC
Found at i:15029769 original size:20 final size:20
Alignment explanation
Indices: 15029744--15029782 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
15029734 TAATTTCTTC
15029744 TTTACTTACTCT-CTTGCTTG
1 TTTACTTACT-TGCTTGCTTG
15029764 TTTACTTACTTGCTTGCTT
1 TTTACTTACTTGCTTGCTT
15029783 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.10, C:0.23, G:0.10, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTGCTTG
Found at i:15036452 original size:13 final size:13
Alignment explanation
Indices: 15036430--15036468 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
15036420 ATTTCGATAG
15036430 TTTT-TTTTATTA
1 TTTTATTTTATTA
15036442 TTTTATTTTATTA
1 TTTTATTTTATTA
15036455 TTTTATTTTTATTA
1 TTTTA-TTTTATTA
15036469 ATATTATTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 4 0.16
13 13 0.52
14 8 0.32
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTATTTTATTA
Found at i:15038018 original size:26 final size:26
Alignment explanation
Indices: 15037989--15038038 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
15037979 AAATGTGCGA
15037989 AAAAG-AAAAAAAATATAGAAAAAGTG
1 AAAAGTAAAAAAAAT-TAGAAAAAGTG
* *
15038015 AAAAGTAAAAACAATTGGAAAAAG
1 AAAAGTAAAAAAAATTAGAAAAAG
15038039 GTATTGAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 13 0.62
27 8 0.38
ACGTcount: A:0.70, C:0.02, G:0.16, T:0.12
Consensus pattern (26 bp):
AAAAGTAAAAAAAATTAGAAAAAGTG
Found at i:15046071 original size:61 final size:58
Alignment explanation
Indices: 15045968--15046099 Score: 201
Period size: 61 Copynumber: 2.2 Consensus size: 58
15045958 ATCACCTTAA
* *
15045968 TATTAAATTAATATAATACTTATTAAGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAATAGAATACTTATTAAGATAAATATTAAATTAAATTTAATATTAAATC
*
15046026 TATTAAATTAATAGAATATTTATCTACAAGATAAATATTAAATTAAATTTAATATTAAATC
1 TATTAAATTAATAGAATACTTAT-T--AAGATAAATATTAAATTAAATTTAATATTAAATC
*
15046087 TATTAAAATAATA
1 TATTAAATTAATA
15046100 TTATTTTTTG
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
58 21 0.31
59 1 0.01
61 45 0.67
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.42
Consensus pattern (58 bp):
TATTAAATTAATAGAATACTTATTAAGATAAATATTAAATTAAATTTAATATTAAATC
Found at i:15050353 original size:40 final size:39
Alignment explanation
Indices: 15050306--15050455 Score: 192
Period size: 40 Copynumber: 3.8 Consensus size: 39
15050296 AACTATTGAA
* * *
15050306 TGAATGCACATACGTGCTCCTGTTTATACTTTGGTACCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
*
15050345 TTGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
1 -TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA-CCC
*
15050386 TGAATGCACATACGTGCCCCTGTTTGTACTTCAGTACTCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTAC-CC
* * * *
15050426 TAAATGCACTTACGTGCCTCTATTTGTACT
1 TGAATGCACATACGTGCCCCTGTTTGTACT
15050456 CCAGTAACTC
Statistics
Matches: 98, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 94 0.96
41 3 0.03
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (39 bp):
TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
Found at i:15050405 original size:20 final size:20
Alignment explanation
Indices: 15050346--15050407 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
15050336 TTGGTACCCT
*
15050346 TGAATGCACATACATGCCCC
1 TGAATGCACATACGTGCCCC
** * * *
15050366 TGTTTGTAC-TTCGGTACCCC
1 TGAATGCACATAC-GTGCCCC
15050386 TGAATGCACATACGTGCCCC
1 TGAATGCACATACGTGCCCC
15050406 TG
1 TG
15050408 TTTGTACTTC
Statistics
Matches: 29, Mismatches: 11, Indels: 4
0.66 0.25 0.09
Matches are distributed among these distances:
19 2 0.07
20 25 0.86
21 2 0.07
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.27
Consensus pattern (20 bp):
TGAATGCACATACGTGCCCC
Found at i:15050743 original size:14 final size:14
Alignment explanation
Indices: 15050724--15050753 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15050714 GTAATAGTGA
*
15050724 TTTGGATGTTTATG
1 TTTGGAAGTTTATG
15050738 TTTGGAAGTTTATG
1 TTTGGAAGTTTATG
15050752 TT
1 TT
15050754 GAATTGGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.27, T:0.57
Consensus pattern (14 bp):
TTTGGAAGTTTATG
Found at i:15052758 original size:19 final size:19
Alignment explanation
Indices: 15052734--15052771 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
15052724 TCGTATTTTT
15052734 ATTTTT-ATATTAATTTTGG
1 ATTTTTGATATT-ATTTTGG
15052753 ATTTTTGGATATTATTTTG
1 ATTTTT-GATATTATTTTG
15052772 ATAAAATGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 6 0.35
21 5 0.29
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.63
Consensus pattern (19 bp):
ATTTTTGATATTATTTTGG
Found at i:15058815 original size:24 final size:24
Alignment explanation
Indices: 15058787--15058860 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
15058777 TATATTTAAA
*
15058787 ATATATTAATTAAATTGTATACAC
1 ATATATTAATCAAATTGTATACAC
*
15058811 ATATA-TAA-GAACTATT-TA-A-A-
1 ATATATTAATCAA--ATTGTATACAC
*
15058831 ATATATTAATCAGATTGTATACAC
1 ATATATTAATCAAATTGTATACAC
15058855 ATATAT
1 ATATAT
15058861 AAGAACTGCA
Statistics
Matches: 39, Mismatches: 3, Indels: 16
0.67 0.05 0.28
Matches are distributed among these distances:
20 8 0.21
21 6 0.15
22 5 0.13
23 6 0.15
24 14 0.36
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.39
Consensus pattern (24 bp):
ATATATTAATCAAATTGTATACAC
Found at i:15058827 original size:44 final size:44
Alignment explanation
Indices: 15058779--15058867 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
15058769 ACACGGAGTA
*
15058779 TATTTAAAATATATTAATTAAATTGTATACACATATATAAGAAC
1 TATTTAAAATATATTAATCAAATTGTATACACATATATAAGAAC
*
15058823 TATTTAAAATATATTAATCAGATTGTATACACATATATAAGAAC
1 TATTTAAAATATATTAATCAAATTGTATACACATATATAAGAAC
15058867 T
1 T
15058868 GCATGGATAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.38
Consensus pattern (44 bp):
TATTTAAAATATATTAATCAAATTGTATACACATATATAAGAAC
Found at i:15059614 original size:24 final size:24
Alignment explanation
Indices: 15059572--15059623 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
15059562 AATCAAAGTC
** *
15059572 AAATATATTATGTTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
15059596 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
15059620 AAAT
1 AAAT
15059624 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:15064027 original size:24 final size:24
Alignment explanation
Indices: 15063985--15064036 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
15063975 GATCAAAGTC
** *
15063985 AAATATATTATGTTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
15064009 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
15064033 AAAT
1 AAAT
15064037 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:15067105 original size:16 final size:16
Alignment explanation
Indices: 15067084--15067119 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
15067074 TGAATTACTA
15067084 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
* *
15067100 ATTACAATTTTATTCC
1 ATTACAACTCTATTCC
15067116 ATTA
1 ATTA
15067120 TAGCCCTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:15069698 original size:3 final size:3
Alignment explanation
Indices: 15069690--15069717 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
15069680 AGTTTTTCTC
15069690 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
15069718 AAAACACTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:15070486 original size:21 final size:20
Alignment explanation
Indices: 15070462--15070505 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
15070452 AAAACTGTTA
* *
15070462 TAACAGTTAGCAGTTAGTAGT
1 TAACAGTTAACAGTGA-TAGT
15070483 TAACAGTTAACAGTGATAGT
1 TAACAGTTAACAGTGATAGT
15070503 TAA
1 TAA
15070506 GGTTGTTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32
Consensus pattern (20 bp):
TAACAGTTAACAGTGATAGT
Found at i:15078225 original size:43 final size:41
Alignment explanation
Indices: 15078177--15078333 Score: 145
Period size: 43 Copynumber: 3.7 Consensus size: 41
15078167 GATTTTGATA
* *
15078177 TGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGACATCGACT
1 TGTGATTT-GTGTAAGACCATGTCTGGGACATTGACATCGA-T
* *
15078220 TGTGTTTATGTGTAAGACCATGTCTAGGACATTGACATCGTAT
1 TGTGATT-TGTGTAAGACCATGTCTGGGACATTGACATCG-AT
* * * * *
15078263 T-TGATTTGTGGAAGACCCTGTATGGGACAATGGCATCGAT
1 TGTGATTTGTGTAAGACCATGTCTGGGACATTGACATCGAT
** *
15078303 ATGTGATTACATGTAAGACCACGTCTGGGAC
1 -TGTGATT-TGTGTAAGACCATGTCTGGGAC
15078334 GTTGGCATTG
Statistics
Matches: 94, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
40 2 0.02
41 27 0.29
42 9 0.10
43 54 0.57
44 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (41 bp):
TGTGATTTGTGTAAGACCATGTCTGGGACATTGACATCGAT
Found at i:15089428 original size:20 final size:20
Alignment explanation
Indices: 15089403--15089442 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
15089393 GAATTGTTGC
*
15089403 TAAACCATTCCATTGCATTT
1 TAAACCATTCCATTACATTT
*
15089423 TAAACCATTTCATTACATTT
1 TAAACCATTCCATTACATTT
15089443 CATTTCATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.23, G:0.03, T:0.42
Consensus pattern (20 bp):
TAAACCATTCCATTACATTT
Found at i:15091409 original size:18 final size:17
Alignment explanation
Indices: 15091376--15091414 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
15091366 TTGTATAAAT
15091376 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
15091394 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
15091411 TGTG
1 TGTG
15091415 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:15112332 original size:21 final size:21
Alignment explanation
Indices: 15112308--15112350 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
15112298 TACAACATTA
15112308 AACTCTAACAAAAAAATTATC
1 AACTCTAACAAAAAAATTATC
* * * *
15112329 AACTTTTACATAAATATTATC
1 AACTCTAACAAAAAAATTATC
15112350 A
1 A
15112351 TTGTAAAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (21 bp):
AACTCTAACAAAAAAATTATC
Found at i:15114398 original size:105 final size:105
Alignment explanation
Indices: 15114216--15114472 Score: 505
Period size: 105 Copynumber: 2.4 Consensus size: 105
15114206 AAACTCTCAG
15114216 CTTCTAAAATCAGAGTCTGTATTGATGTTTATACCTTGTGCGCTTCGTAAACTTCTGGTTTAACT
1 CTTCTAAAATCAGAGTCTGTATTGATGTTTATACCTTGTGCGCTTCGTAAACTTCTGGTTTAACT
15114281 TCTAAAATTAGCTTCTAAAATTGTGTCTTGTGCACAATGT
66 TCTAAAATTAGCTTCTAAAATTGTGTCTTGTGCACAATGT
15114321 CTTCTAAAATCAGAGTCTGTATTGATGTTTATACCTTGTGCGCTTCGTAAACTTCTGGTTTAACT
1 CTTCTAAAATCAGAGTCTGTATTGATGTTTATACCTTGTGCGCTTCGTAAACTTCTGGTTTAACT
15114386 TCTAAAATTAGCTTCTAAAATTGTGTCTTGTGCACAATGT
66 TCTAAAATTAGCTTCTAAAATTGTGTCTTGTGCACAATGT
*
15114426 CTTCTAAAATCAGAGTCTGTATTGATGTTTATACCTTGTGCGTTTCG
1 CTTCTAAAATCAGAGTCTGTATTGATGTTTATACCTTGTGCGCTTCG
15114473 GATTCCATAA
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
105 151 1.00
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (105 bp):
CTTCTAAAATCAGAGTCTGTATTGATGTTTATACCTTGTGCGCTTCGTAAACTTCTGGTTTAACT
TCTAAAATTAGCTTCTAAAATTGTGTCTTGTGCACAATGT
Found at i:15117410 original size:64 final size:63
Alignment explanation
Indices: 15117327--15117512 Score: 210
Period size: 57 Copynumber: 3.0 Consensus size: 63
15117317 AAATTATATT
**
15117327 TAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATA
1 TAATAATAATTATACTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATA
* * *
15117390 TAATAATATTTAATACTAAA-TA-ATTTTATCA--AAT-TATA-TAT--TTTTATTAAATT-ATA
1 TAATAATAATT-ATACTAAATTATATTTTAT-AGTATTATATATTATGATTTTAGTAAATTCATA
**
15117446 TTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATA
1 --TAATAATAATTATACTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATA
15117511 TA
1 TA
15117513 TTTTATTAAA
Statistics
Matches: 100, Mismatches: 10, Indels: 26
0.74 0.07 0.19
Matches are distributed among these distances:
56 3 0.03
57 17 0.17
58 13 0.13
59 10 0.10
60 6 0.06
61 6 0.06
62 10 0.10
63 15 0.15
64 17 0.17
65 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.52
Consensus pattern (63 bp):
TAATAATAATTATACTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATA
Found at i:15117513 original size:41 final size:39
Alignment explanation
Indices: 15117347--15117531 Score: 114
Period size: 41 Copynumber: 4.6 Consensus size: 39
15117337 TATTTTAAAT
*
15117347 TATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
1 TATATTTTATA-TATTATATATTATAATTTTAGTAAATT-A
* * *
15117388 TATA-ATAATAT-TTA-ATACTAAATAATTTTA-TCAAATTA
1 TATATTTTATATATTATATA-T-TATAATTTTAGT-AAATTA
* **
15117426 TATATTTTTATTAAATTATAT-TTAATAATAATTATTTTAAA-T-
1 TATA-TTTTA-TATATTATATATT-ATAAT--TT-TAGTAAATTA
*
15117468 TATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
1 TATATTTTATA-TATTATATATTATAATTTTAGTAAATT-A
*
15117509 TATATTTTATTAAATTATATATT
1 TATATTTTA-TATATTATATATT
15117532 TTTATTAAAT
Statistics
Matches: 111, Mismatches: 14, Indels: 38
0.68 0.09 0.23
Matches are distributed among these distances:
37 3 0.03
38 15 0.14
39 17 0.15
40 8 0.07
41 47 0.42
42 11 0.10
43 5 0.05
44 4 0.04
45 1 0.01
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (39 bp):
TATATTTTATATATTATATATTATAATTTTAGTAAATTA
Found at i:15117517 original size:18 final size:17
Alignment explanation
Indices: 15117494--15117546 Score: 79
Period size: 18 Copynumber: 3.0 Consensus size: 17
15117484 ATATATTATG
*
15117494 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
15117512 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
15117529 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
15117547 TTAATAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
17 5 0.15
18 28 0.85
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:15117565 original size:26 final size:26
Alignment explanation
Indices: 15117427--15117566 Score: 96
Period size: 26 Copynumber: 5.5 Consensus size: 26
15117417 ATCAAATTAT
*
15117427 ATATTTTTATTAAATTATATTTAATA
1 ATATTTATATTAAATTATATTTAATA
* * *
15117453 ATAATTATTTTAAATTATATTTTATA
1 ATATTTATATTAAATTATATTTAATA
* * *
15117479 GTATTATATATT--ATGAT-TTTAGTA
1 ATATT-TATATTAAATTATATTTAATA
** *
15117503 A-ATTCATATATTTTATTA-AATT-AT-
1 ATATT--TATATTAAATTATATTTAATA
*
15117527 ATATTTTTATTAAATTATATTTAATA
1 ATATTTATATTAAATTATATTTAATA
*
15117553 ATATTTATGTTAAA
1 ATATTTATATTAAA
15117567 ATATGATTAA
Statistics
Matches: 85, Mismatches: 20, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
23 12 0.14
24 16 0.19
25 10 0.12
26 42 0.49
27 5 0.06
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.56
Consensus pattern (26 bp):
ATATTTATATTAAATTATATTTAATA
Found at i:15117583 original size:121 final size:121
Alignment explanation
Indices: 15117315--15117555 Score: 355
Period size: 121 Copynumber: 2.0 Consensus size: 121
15117305 AAAGTAGATT
*
15117315 ATAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAG
1 ATAAATTATATTAAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAG
**
15117380 TAAATTCATATAATAATATTTAATACTAAATAATTTTATCAAATTATATATTTTTA
66 TAAATTCATATAATAATATTTAATACTAAATAATTTTATCAAATTATATATTAATA
* *
15117436 TTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAG
1 ATAAATTATATTAAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAG
** * * * *
15117501 TAAATTCATAT-ATTTTA-TTAA-ATTATATATTTTTATTAAATTATAT-TTAATA
66 TAAATTCATATAATAATATTTAATACTAAATAATTTTATCAAATTATATATTAATA
15117553 ATA
1 ATA
15117556 TTTATGTTAA
Statistics
Matches: 110, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
117 6 0.05
118 21 0.19
119 4 0.04
120 4 0.04
121 75 0.68
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (121 bp):
ATAAATTATATTAAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAG
TAAATTCATATAATAATATTTAATACTAAATAATTTTATCAAATTATATATTAATA
Found at i:15117776 original size:44 final size:46
Alignment explanation
Indices: 15117708--15117800 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 46
15117698 TTACACCTCT
* *
15117708 ATTCCATTCAACCAAACACAAGAA-TATC-ACTACGCCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCTACTACGCCTCTATTCC
* *
15117752 ATTCTATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCTACTACGCCTCTATTCC
15117798 ATT
1 ATT
15117801 ACGCATCTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 22 0.51
45 3 0.07
46 18 0.42
ACGTcount: A:0.37, C:0.30, G:0.04, T:0.29
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAAAAGAATTACCTACTACGCCTCTATTCC
Found at i:15117803 original size:16 final size:16
Alignment explanation
Indices: 15117782--15117850 Score: 102
Period size: 16 Copynumber: 4.3 Consensus size: 16
15117772 AGAATTACCT
15117782 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
15117798 ATTACGCATCTATTCC
1 ATTACGCCTCTATTCC
*
15117814 ATTATGCCTCTATTCC
1 ATTACGCCTCTATTCC
* *
15117830 ATTACACTTCTATTCC
1 ATTACGCCTCTATTCC
15117846 ATTAC
1 ATTAC
15117851 AGCGAACCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.23, C:0.32, G:0.04, T:0.41
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:15119403 original size:28 final size:27
Alignment explanation
Indices: 15119348--15119405 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
15119338 AGTGCATAAT
* *
15119348 AAAATAAAATAAAACATATAAATCTAG
1 AAAATAAAATAAAACAAATAAATATAG
15119375 AAAATAAAATAAAAACAAATAACA-ATAG
1 AAAATAAAAT-AAAACAAATAA-ATATAG
15119403 AAA
1 AAA
15119406 TAGAAAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 10 0.37
28 16 0.59
29 1 0.04
ACGTcount: A:0.72, C:0.07, G:0.03, T:0.17
Consensus pattern (27 bp):
AAAATAAAATAAAACAAATAAATATAG
Found at i:15119406 original size:22 final size:21
Alignment explanation
Indices: 15119373--15119436 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 21
15119363 ATATAAATCT
15119373 AGAAAATA-AAATAAAAACAA
1 AGAAAATAGAAATAAAAACAA
* *
15119393 ATAACAATAGAAATAGAAAGAAAA
1 AGAA-AATAGAAATA-AAA-ACAA
15119417 AGAAAA-AGAAAT-AAAACAA
1 AGAAAATAGAAATAAAAACAA
15119436 A
1 A
15119437 AAACTAAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
19 4 0.11
20 6 0.17
21 4 0.11
22 11 0.31
23 5 0.14
24 6 0.17
ACGTcount: A:0.77, C:0.05, G:0.09, T:0.09
Consensus pattern (21 bp):
AGAAAATAGAAATAAAAACAA
Found at i:15119406 original size:27 final size:26
Alignment explanation
Indices: 15119345--15119417 Score: 69
Period size: 28 Copynumber: 2.7 Consensus size: 26
15119335 TAAAGTGCAT
*
15119345 AATA-AAATAAAAT-AAAACATATAA
1 AATAGAAATAAAATAAAAACAAATAA
*
15119369 ATCTAGAAAATAAAATAAAAACAAATAA
1 A-ATAG-AAATAAAATAAAAACAAATAA
*
15119397 CAATAGAAATAGAAAGAAAAA
1 -AATAGAAATA-AAATAAAAA
15119418 GAAAAAGAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
24 1 0.03
25 2 0.05
27 14 0.36
28 21 0.54
29 1 0.03
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.16
Consensus pattern (26 bp):
AATAGAAATAAAATAAAAACAAATAA
Found at i:15133811 original size:3 final size:3
Alignment explanation
Indices: 15133803--15133847 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
15133793 AGCTTTAATA
*
15133803 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT AAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
15133848 AACAAAGGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.36, C:0.00, G:0.31, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:15134773 original size:27 final size:27
Alignment explanation
Indices: 15134735--15134789 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
15134725 AGCTTAAATG
15134735 TATGGTCTAACTATCATTGGATTCGGA
1 TATGGTCTAACTATCATTGGATTCGGA
15134762 TATGGTCTAACTATCATTGGATTCGGA
1 TATGGTCTAACTATCATTGGATTCGGA
15134789 T
1 T
15134790 CATCCAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (27 bp):
TATGGTCTAACTATCATTGGATTCGGA
Found at i:15138420 original size:52 final size:52
Alignment explanation
Indices: 15138318--15138460 Score: 146
Period size: 52 Copynumber: 2.7 Consensus size: 52
15138308 TATGTCTCTG
*
15138318 TACAATCCAACCGAACCTCCACAAAACCAAATATCATGCATATAATTTCTCCT
1 TACAATCC-ACCGAACCTCCACAAAACCAAATATCATGCATATAATTTCTCCA
* * *
15138371 TACAATCCACCTGAACCTCCGC-AAACCAAATATCATGTATATGCA-TTCTCCA
1 TACAATCCACC-GAACCTCCACAAAACCAAATATCATGCATAT-AATTTCTCCA
* * ** * *
15138423 AACAATCCATCCCAACCTTTACAAAGCCAAATAACATG
1 TACAATCCA-CCGAACCTCCACAAAACCAAATATCATG
15138461 TCGCACAACA
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
52 42 0.56
53 33 0.44
ACGTcount: A:0.39, C:0.32, G:0.06, T:0.23
Consensus pattern (52 bp):
TACAATCCACCGAACCTCCACAAAACCAAATATCATGCATATAATTTCTCCA
Found at i:15143312 original size:32 final size:32
Alignment explanation
Indices: 15143266--15143335 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
15143256 ATTATCATGT
15143266 CATAGTGAACATGTTGAGTTGTGAAATATTAAA
1 CATA-TGAACATGTTGAGTTGTGAAATATTAAA
15143299 CATATGAACATGTTGAGTTGTGAAATATTAAA
1 CATATGAACATGTTGAGTTGTGAAATATTAAA
15143331 CATAT
1 CATAT
15143336 TTTCTCGAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 33 0.89
33 4 0.11
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.34
Consensus pattern (32 bp):
CATATGAACATGTTGAGTTGTGAAATATTAAA
Found at i:15150173 original size:17 final size:19
Alignment explanation
Indices: 15150126--15150176 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
15150116 ATAGTATTTT
15150126 ATTAATTTAATATTAAAATG
1 ATTAATTTAATATTAAAA-G
*
15150146 ATTATTTTAATATTAAAA-
1 ATTAATTTAATATTAAAAG
15150164 A-TAATTTAATATT
1 ATTAATTTAATATT
15150177 TATATTCTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 11 0.38
18 1 0.03
20 17 0.59
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
ATTAATTTAATATTAAAAG
Found at i:15150216 original size:61 final size:58
Alignment explanation
Indices: 15150151--15150264 Score: 147
Period size: 61 Copynumber: 1.9 Consensus size: 58
15150141 AAATGATTAT
* * *
15150151 TTTAATATTAAAAATAATTTAATATTTATATTCTAGATAAATATTCTATTAATTTAACAGA
1 TTTAATATTAAAAATAATCTAATATTTAT-CT-TA-ATAAATATTATATTAATTTAACAGA
** *
15150212 TTTAATATTAAATTTAATCTAATATTTATCTTAATAAGTATTATATTAATTTA
1 TTTAATATTAAAAATAATCTAATATTTATCTTAATAAATATTATATTAATTTA
15150265 GTATTAAAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
58 18 0.38
59 2 0.04
60 1 0.02
61 26 0.55
ACGTcount: A:0.44, C:0.04, G:0.03, T:0.49
Consensus pattern (58 bp):
TTTAATATTAAAAATAATCTAATATTTATCTTAATAAATATTATATTAATTTAACAGA
Found at i:15162391 original size:55 final size:55
Alignment explanation
Indices: 15162307--15162412 Score: 151
Period size: 55 Copynumber: 1.9 Consensus size: 55
15162297 AGGACTGTGG
*
15162307 GGTCGAAAGATAAGTACTTCTTGCTGACTCATTATGCTAGT-GAAAGATCGGGTGA
1 GGTCGAAAGATAAGTACTTCTTACTGACTCATTATGCTAGTAG-AAGATCGGGTGA
* * * *
15162362 GGTCGGAAGATAAGTAGTTCTTACTGACTCGTTATGTTAGTAGAAGATCGG
1 GGTCGAAAGATAAGTACTTCTTACTGACTCATTATGCTAGTAGAAGATCGG
15162413 AAGATCCTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
55 44 0.98
56 1 0.02
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (55 bp):
GGTCGAAAGATAAGTACTTCTTACTGACTCATTATGCTAGTAGAAGATCGGGTGA
Found at i:15171752 original size:16 final size:16
Alignment explanation
Indices: 15171731--15171766 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
15171721 ATTTTATTTT
15171731 AATAATAAATTTAAAA
1 AATAATAAATTTAAAA
* *
15171747 AATAATAATTTTAAAT
1 AATAATAAATTTAAAA
15171763 AATA
1 AATA
15171767 TTGAAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AATAATAAATTTAAAA
Found at i:15177589 original size:21 final size:22
Alignment explanation
Indices: 15177563--15177609 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
15177553 CTCTGCTCAA
*
15177563 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
15177584 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
15177606 ACTC
1 ACTC
15177610 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:15185710 original size:19 final size:20
Alignment explanation
Indices: 15185629--15185731 Score: 77
Period size: 20 Copynumber: 5.0 Consensus size: 20
15185619 TTATTTAAAA
15185629 GTTAAAAAATAATATTT-TATT
1 GTTAAAAAATAA-ATTTAT-TT
* *
15185650 -TTAAAAAGTGAAATTTGAATTA
1 GTTAAAAAAT-AAATTT--ATTT
* **
15185672 ATTAAAAAATAAAAAATATTT
1 GTTAAAAAAT-AAATTTATTT
*
15185693 GTTAAAAAA-AGATTTATTT
1 GTTAAAAAATAAATTTATTT
15185712 GTTAAAAAATAAATTTATTT
1 GTTAAAAAATAAATTTATTT
15185732 AAAAATATAT
Statistics
Matches: 64, Mismatches: 12, Indels: 13
0.72 0.13 0.15
Matches are distributed among these distances:
19 16 0.25
20 21 0.33
21 13 0.20
22 1 0.02
23 13 0.20
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (20 bp):
GTTAAAAAATAAATTTATTT
Found at i:15185727 original size:16 final size:16
Alignment explanation
Indices: 15185708--15185756 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
15185698 AAAAAGATTT
*
15185708 ATTTGTTAAAAAATAA
1 ATTTATTAAAAAATAA
* *
15185724 ATTTATTTAAAAATAT
1 ATTTATTAAAAAATAA
* *
15185740 ATATATTAAAAAGTAA
1 ATTTATTAAAAAATAA
15185756 A
1 A
15185757 AATTAAAATT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (16 bp):
ATTTATTAAAAAATAA
Found at i:15185787 original size:20 final size:19
Alignment explanation
Indices: 15185733--15185787 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 19
15185723 AATTTATTTA
15185733 AAAATATATATATTAAAAAGT
1 AAAA-ATATATATT-AAAAGT
*
15185754 AAAAAT-TAAAATTAAAAGTT
1 AAAAATAT-ATATTAAAAG-T
15185774 AAAAATATATATTA
1 AAAAATATATATTA
15185788 TAAGATCACA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 6 0.21
20 18 0.62
21 5 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (19 bp):
AAAAATATATATTAAAAGT
Found at i:15186271 original size:40 final size:41
Alignment explanation
Indices: 15186227--15186311 Score: 127
Period size: 40 Copynumber: 2.1 Consensus size: 41
15186217 GTGTTGGTTA
* *
15186227 TAATTTTTTAATTTTAATACATATTTATAAATTTATATA-T
1 TAATTTTTTAATTTTAATACACATTCATAAATTTATATACT
* *
15186267 TAATTTTTTAATTTTAGTACACATTCATAAATTTATGTACT
1 TAATTTTTTAATTTTAATACACATTCATAAATTTATATACT
15186308 TAAT
1 TAAT
15186312 ATATATTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 35 0.88
41 5 0.12
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (41 bp):
TAATTTTTTAATTTTAATACACATTCATAAATTTATATACT
Found at i:15186279 original size:20 final size:17
Alignment explanation
Indices: 15186226--15186282 Score: 51
Period size: 20 Copynumber: 3.0 Consensus size: 17
15186216 TGTGTTGGTT
15186226 ATAATTTTTTAATTTTA
1 ATAATTTTTTAATTTTA
*
15186243 ATACATATTTATAAATTTATA
1 ATA-AT-TTT-TTAATTT-TA
15186264 TATTAATTTTTTAATTTTA
1 -A-TAATTTTTTAATTTTA
15186283 GTACACATTC
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
17 3 0.09
18 2 0.06
19 5 0.16
20 12 0.38
21 5 0.16
22 3 0.09
23 2 0.06
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
ATAATTTTTTAATTTTA
Found at i:15186322 original size:40 final size:40
Alignment explanation
Indices: 15186235--15186325 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 40
15186225 TATAATTTTT
* * * *
15186235 TAATTTTAATACATATTTATAAATTTATATATTAATTTTT
1 TAATTTTAATACACATTCATAAATTTATATATTAATTATA
* *
15186275 TAATTTTAGTACACATTCATAAATTTATGTACTTAA-TATA
1 TAATTTTAATACACATTCATAAATTTATATA-TTAATTATA
*
15186315 TATTTTTAATA
1 TAATTTTAATA
15186326 GATAAAGACA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 38 0.90
41 4 0.10
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (40 bp):
TAATTTTAATACACATTCATAAATTTATATATTAATTATA
Found at i:15186494 original size:71 final size:72
Alignment explanation
Indices: 15186374--15186524 Score: 241
Period size: 71 Copynumber: 2.1 Consensus size: 72
15186364 GTTTAAAAAC
* * * * *
15186374 TTAAAGAAATTAAATATATTAAAAACATGTTATGTATAGCCAATTTTAAAATTTTAATATATTTA
1 TTAAA-AAATTAAATATATTAAAAACATGTTAAGTATAACCAATATTAAAATTATAATATATTCA
15186439 ATATATTT
65 ATATATTT
15186447 TTAAAAAATTAAATATATTAAAAA-ATGTTAAGTATAACCAATATTAAAATTATAATATATTCAA
1 TTAAAAAATTAAATATATTAAAAACATGTTAAGTATAACCAATATTAAAATTATAATATATTCAA
15186511 TATATTT
66 TATATTT
15186518 TTAAAAA
1 TTAAAAA
15186525 TATATTTTAA
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
71 49 0.67
72 19 0.26
73 5 0.07
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (72 bp):
TTAAAAAATTAAATATATTAAAAACATGTTAAGTATAACCAATATTAAAATTATAATATATTCAA
TATATTT
Found at i:15188248 original size:30 final size:30
Alignment explanation
Indices: 15188212--15188318 Score: 117
Period size: 30 Copynumber: 3.6 Consensus size: 30
15188202 GTCGCAGAGT
* * *
15188212 AGTTCATATCACTCGGACAT-TGCCAGTTCA
1 AGTTCATATCACCCAGACATAAG-CAGTTCA
*
15188242 AGTTCATATCACCCAGACATAAGCGGTTCA
1 AGTTCATATCACCCAGACATAAGCAGTTCA
* * **
15188272 AGTTCATATCACCCAAACATAGGCAGTTTG
1 AGTTCATATCACCCAGACATAAGCAGTTCA
*
15188302 AGTTCATTTCACCCAGA
1 AGTTCATATCACCCAGA
15188319 GCAACCACCG
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
30 64 0.98
31 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (30 bp):
AGTTCATATCACCCAGACATAAGCAGTTCA
Found at i:15191741 original size:11 final size:11
Alignment explanation
Indices: 15191725--15191759 Score: 52
Period size: 11 Copynumber: 3.0 Consensus size: 11
15191715 TATATTTAAA
15191725 ATTTAAAATAT
1 ATTTAAAATAT
15191736 ATTTAAAATATAT
1 ATTT-AAA-ATAT
15191749 ATTTAAAATAT
1 ATTTAAAATAT
15191760 TATAAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 8 0.36
12 6 0.27
13 8 0.36
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
ATTTAAAATAT
Found at i:15191747 original size:29 final size:30
Alignment explanation
Indices: 15191672--15191757 Score: 72
Period size: 29 Copynumber: 2.8 Consensus size: 30
15191662 AAAATGTTTG
*
15191672 AATATCTTTAAAAT-TAATTTTAAAA-TTAAT
1 AATATATTTAAAATAT-A-TTTAAAATTTAAT
* *
15191702 AATTTA-TAAAAATTATATTTAAAATTTAA-
1 AATATATTTAAAA-TATATTTAAAATTTAAT
15191731 AATATATTTAAAATATATATTTAAAAT
1 AATATATTT-AAA-ATATATTTAAAAT
15191758 ATTATAAAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
29 17 0.38
30 11 0.24
31 16 0.36
32 1 0.02
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (30 bp):
AATATATTTAAAATATATTTAAAATTTAAT
Found at i:15191750 original size:13 final size:13
Alignment explanation
Indices: 15191732--15191759 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
15191722 AAAATTTAAA
15191732 ATATATTTAAAAT
1 ATATATTTAAAAT
15191745 ATATATTTAAAAT
1 ATATATTTAAAAT
15191758 AT
1 AT
15191760 TATAAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATATATTTAAAAT
Found at i:15191915 original size:57 final size:56
Alignment explanation
Indices: 15191732--15191919 Score: 172
Period size: 57 Copynumber: 3.3 Consensus size: 56
15191722 AAAATTTAAA
* *
15191732 ATATATTTAAAATATATATTTAAAATATTATAAAACAAATAATAAATTTGAAAAGTC
1 ATATCTTTAAAATATATATTTAAAATATTATAAAACTAATAATAAATTTG-AAAGTC
* * *
15191789 ATATCTTTAAAAATAATATATTTTAAATAATT-TAAAAATCATAATTAAAAAAATTAT-AAA-AC
1 ATATCTTT-AAAAT-ATATATTTAAAAT-ATTAT-AAAA-C-TAA-T-AATAAATT-TGAAAGTC
* *
15191851 A-A--ATTAAAATATACATTTAAAATATTATAAAACTAATAATAAATTTGAAAGGTC
1 ATATCTTTAAAATATATATTTAAAATATTATAAAACTAATAATAAATTTGAAA-GTC
15191905 ATATCTTTAAAATAT
1 ATATCTTTAAAATAT
15191920 TTAAATGTTT
Statistics
Matches: 104, Mismatches: 11, Indels: 32
0.71 0.07 0.22
Matches are distributed among these distances:
51 1 0.01
52 10 0.10
53 1 0.01
54 5 0.05
55 2 0.02
56 7 0.07
57 28 0.27
58 10 0.10
59 15 0.14
60 7 0.07
61 2 0.02
62 4 0.04
63 4 0.04
64 7 0.07
65 1 0.01
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.37
Consensus pattern (56 bp):
ATATCTTTAAAATATATATTTAAAATATTATAAAACTAATAATAAATTTGAAAGTC
Found at i:15191955 original size:21 final size:20
Alignment explanation
Indices: 15191937--15192038 Score: 91
Period size: 21 Copynumber: 4.9 Consensus size: 20
15191927 TTTTATATTA
*
15191937 TTAAAAATATATTTAATATT
1 TTAAAAATATATTTAAAATT
*
15191957 TAAAAAATAATATTT-AAATT
1 TTAAAAAT-ATATTTAAAATT
* *
15191977 TTAAAAA-AAATTAAAAATAAT
1 TTAAAAATATATTTAAAAT--T
*
15191998 TTCAAATATATATTTAAAATT
1 TT-AAAAATATATTTAAAATT
15192019 TTAAAAAATATATTATAAAA
1 TT-AAAAATATATT-TAAAA
15192039 CATTTCAAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
18 4 0.06
19 4 0.06
20 17 0.26
21 22 0.34
22 9 0.14
23 9 0.14
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (20 bp):
TTAAAAATATATTTAAAATT
Found at i:15191974 original size:116 final size:114
Alignment explanation
Indices: 15191699--15191974 Score: 321
Period size: 116 Copynumber: 2.4 Consensus size: 114
15191689 TTTTAAAATT
*
15191699 AATAATTTATAAAAATTATATTTAAAATTT-AAAAT-ATATTTAAAATATATATTTAAAATATTA
1 AATAA-TT-TAAAAA-TATATTTAAAATTTAAAAATAATATTTAAAATATACATTTAAAATATTA
15191762 TAAAACAAATAATAAATTTGAAAAGTCATATCTTTAAAAATAATATATTTTA
63 TAAAACAAATAATAAATTTGAAAAGTCATATCTTTAAAAATAATATATTTTA
* * *
15191814 AATAATTTAAAAATCATAATTAAAAAAATTATAAAACAA-A-TTAAAATATACATTTAAAATATT
1 AATAATTTAAAAAT-AT-ATT-TAAAATTTA-AAAATAATATTTAAAATATACATTTAAAATATT
* * *
15191877 ATAAAACTAATAATAAATTTGAAAGGTCATATCTTTAAAATATTTAA-ATGTTTTA
62 ATAAAACAAATAATAAATTTGAAAAGTCATATCTTTAAAA-A--TAATATATTTTA
* * *
15191932 TATTA-TTAAAAATATATTTAATATTTAAAAAATAATATTTAAA
1 AATAATTTAAAAATATATTTAAAATTT-AAAAATAATATTTAAA
15191975 TTTTAAAAAA
Statistics
Matches: 136, Mismatches: 13, Indels: 23
0.79 0.08 0.13
Matches are distributed among these distances:
112 1 0.01
113 8 0.06
114 16 0.12
115 16 0.12
116 67 0.49
117 14 0.10
118 11 0.08
119 3 0.02
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.39
Consensus pattern (114 bp):
AATAATTTAAAAATATATTTAAAATTTAAAAATAATATTTAAAATATACATTTAAAATATTATAA
AACAAATAATAAATTTGAAAAGTCATATCTTTAAAAATAATATATTTTA
Found at i:15192081 original size:44 final size:44
Alignment explanation
Indices: 15191968--15192082 Score: 114
Period size: 44 Copynumber: 2.7 Consensus size: 44
15191958 AAAAAATAAT
* *
15191968 ATTT-AAATTTTAAAAAAAAT-TAA-AAATA-ATTTCAAATATAT
1 ATTTAAAATTTTAAAAAATATATAATAAA-ACATTTCAAATATAC
*
15192009 ATTTAAAATTTTAAAAAATATATTATAAAACATTTCAAATATAC
1 ATTTAAAATTTTAAAAAATATATAATAAAACATTTCAAATATAC
* * **
15192053 ATTTCAAGTTTTTTAAAAT-TAATAATAAAA
1 ATTTAAAATTTTAAAAAATAT-ATAATAAAA
15192083 TAAATAAAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
41 4 0.07
42 15 0.25
43 4 0.07
44 38 0.62
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (44 bp):
ATTTAAAATTTTAAAAAATATATAATAAAACATTTCAAATATAC
Found at i:15192083 original size:12 final size:12
Alignment explanation
Indices: 15192066--15192131 Score: 54
Period size: 12 Copynumber: 5.8 Consensus size: 12
15192056 TCAAGTTTTT
*
15192066 TAAAATTAATAA
1 TAAAATAAATAA
15192078 TAAAATAAAT-A
1 TAAAATAAATAA
15192089 -AAAATAAATAA
1 TAAAATAAATAA
15192100 -ATAAATAAA-AA
1 TA-AAATAAATAA
*
15192111 TAAAGACAAA-AA
1 TAAA-ATAAATAA
15192123 TAAAA-AAAT
1 TAAAATAAAT
15192132 GTCAGAGAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
10 12 0.26
11 8 0.17
12 27 0.57
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.21
Consensus pattern (12 bp):
TAAAATAAATAA
Found at i:15192101 original size:18 final size:18
Alignment explanation
Indices: 15192080--15192128 Score: 73
Period size: 18 Copynumber: 2.7 Consensus size: 18
15192070 ATTAATAATA
*
15192080 AAATAAATAAAAATAAAT
1 AAATAAATAAAAATAAAG
15192098 AAATAAATAAAAATAAAG
1 AAATAAATAAAAATAAAG
15192116 ACAA-AAATAAAAA
1 A-AATAAATAAAAA
15192129 AATGTCAGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 27 0.93
19 2 0.07
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (18 bp):
AAATAAATAAAAATAAAG
Found at i:15192290 original size:14 final size:14
Alignment explanation
Indices: 15192271--15192297 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15192261 TTTTCAGAAT
15192271 TTTTTAAATTATTA
1 TTTTTAAATTATTA
15192285 TTTTTAAATTATT
1 TTTTTAAATTATT
15192298 TTTAAATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTTAAATTATTA
Found at i:15192297 original size:11 final size:11
Alignment explanation
Indices: 15192281--15192310 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
15192271 TTTTTAAATT
15192281 ATTATTTTTAA
1 ATTATTTTTAA
15192292 ATTATTTTTAA
1 ATTATTTTTAA
15192303 ATATATTT
1 AT-TATTT
15192311 AAACCTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
ATTATTTTTAA
Found at i:15192391 original size:21 final size:21
Alignment explanation
Indices: 15192366--15192425 Score: 65
Period size: 19 Copynumber: 3.0 Consensus size: 21
15192356 TAAATGTTTA
15192366 AATATTATTAAAAATATATTT
1 AATATTATTAAAAATATATTT
15192387 AATA-T-TTAAAAATAATATTT
1 AATATTATTAAAAAT-ATATTT
* *
15192407 AAAATTA-AAAAAATA-ATTT
1 AATATTATTAAAAATATATTT
15192426 CAAAAATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
19 12 0.35
20 11 0.32
21 11 0.32
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
AATATTATTAAAAATATATTT
Found at i:15192397 original size:19 final size:19
Alignment explanation
Indices: 15192372--15192421 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
15192362 TTTAAATATT
15192372 ATTAAAAAT-ATATTTAATA
1 ATTAAAAATAATATTTAA-A
*
15192391 TTTAAAAATAATATTTAAA
1 ATTAAAAATAATATTTAAA
15192410 ATTAAAAA-AATA
1 ATTAAAAATAATA
15192422 ATTTCAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 4 0.14
19 16 0.57
20 8 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTAAAAATAATATTTAAA
Found at i:15192398 original size:20 final size:19
Alignment explanation
Indices: 15192375--15192418 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
15192365 AAATATTATT
* *
15192375 AAAAATATATTTAATATTT
1 AAAAATATATTTAAAATTA
15192394 AAAAATAATATTTAAAATTA
1 AAAAAT-ATATTTAAAATTA
15192414 AAAAA
1 AAAAA
15192419 ATAATTTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATATATTTAAAATTA
Found at i:15192404 original size:13 final size:13
Alignment explanation
Indices: 15192386--15192410 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15192376 AAAATATATT
15192386 TAATATTTAAAAA
1 TAATATTTAAAAA
15192399 TAATATTTAAAA
1 TAATATTTAAAA
15192411 TTAAAAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TAATATTTAAAAA
Found at i:15192461 original size:36 final size:34
Alignment explanation
Indices: 15192390--15192668 Score: 191
Period size: 36 Copynumber: 8.0 Consensus size: 34
15192380 TATATTTAAT
* *
15192390 ATTTAAAAATA-ATATTTAAAA-TTAAAAAAATA
1 ATTTAAAAATATATTTTTAAAATTTATAAAAATA
15192422 ATTTCAAAAATATATTTTTAAAATTTATAAGAAATA
1 ATTT-AAAAATATATTTTTAAAATTTATAA-AAATA
*
15192458 ATTTCAAAAATATATATTTAAAATTTA-AAAATATA
1 ATTT-AAAAATATATTTTTAAAATTTATAAAA-ATA
* ** ** *
15192493 TTTTTTAAAT-TA-TTTT-ATTTTGTTTAAAATTATA
1 ATTTAAAAATATATTTTTAAAATT-TATAAAA--ATA
* *
15192527 TTTTTAAAAATATATTTAAAATTTAAAATTTAAAAAAATTA
1 -ATTTAAAAATATA-TT----TTTAAAATTTATAAAAA-TA
*
15192568 ATTTCAAAAATATATTTTTAAAATTTATAAGACATA
1 ATTT-AAAAATATATTTTTAAAATTTATAA-AAATA
* *
15192604 ATTTAAAAAAATAATATTTAAAATTTA-AAAAATA
1 ATTTAAAAATAT-ATTTTTAAAATTTATAAAAATA
*
15192638 ATCTAAAAATA-ATATTTT-AAATTT-TAAAAAT
1 ATTTAAAAATATAT-TTTTAAAATTTATAAAAAT
15192669 TATATATTAT
Statistics
Matches: 199, Mismatches: 25, Indels: 46
0.74 0.09 0.17
Matches are distributed among these distances:
31 3 0.02
32 22 0.11
33 16 0.08
34 32 0.16
35 30 0.15
36 65 0.33
37 2 0.01
38 1 0.01
40 6 0.03
41 11 0.06
42 8 0.04
43 3 0.02
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (34 bp):
ATTTAAAAATATATTTTTAAAATTTATAAAAATA
Found at i:15192487 original size:21 final size:22
Alignment explanation
Indices: 15192457--15192503 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
15192447 TATAAGAAAT
15192457 AATTTCAAAAATATATATTTAA
1 AATTTCAAAAATATATATTTAA
* *
15192479 AATTT-AAAAATATATTTTTTA
1 AATTTCAAAAATATATATTTAA
15192500 AATT
1 AATT
15192504 ATTTTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
AATTTCAAAAATATATATTTAA
Found at i:15192528 original size:17 final size:16
Alignment explanation
Indices: 15192481--15192543 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 16
15192471 ATATTTAAAA
*
15192481 TTTAAAAATATA-TTT
1 TTTAAAATTATATTTT
*
15192496 TTTAAATTATTTTATTTT
1 TTTAAA--ATTATATTTT
15192514 GTTTAAAATTATA--TT
1 -TTTAAAATTATATTTT
*
15192529 TTTAAAAATATATTT
1 TTTAAAATTATATTT
15192544 AAAATTTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
14 11 0.29
15 8 0.21
16 1 0.03
17 9 0.24
18 3 0.08
19 6 0.16
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.59
Consensus pattern (16 bp):
TTTAAAATTATATTTT
Found at i:15192534 original size:14 final size:14
Alignment explanation
Indices: 15192515--15192590 Score: 50
Period size: 14 Copynumber: 5.5 Consensus size: 14
15192505 TTTTATTTTG
*
15192515 TTTAAAATTATATT
1 TTTAAAAATATATT
15192529 TTTAAAAATATA--
1 TTTAAAAATATATT
* **
15192541 TTT-AAAATTTAAAA
1 TTTAAAAATAT-ATT
* *
15192555 TTTAAAAAAATTAAT
1 TTTAAAAATA-TATT
*
15192570 TTCAAAAATATATT
1 TTTAAAAATATATT
15192584 TTTAAAA
1 TTTAAAA
15192591 TTTATAAGAC
Statistics
Matches: 48, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
11 6 0.12
12 4 0.08
14 23 0.48
15 14 0.29
16 1 0.02
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (14 bp):
TTTAAAAATATATT
Done.