Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 57 of 187
Found at i:16963769 original size:34 final size:32
Alignment explanation
Indices: 16963727--16963808 Score: 105
Period size: 31 Copynumber: 2.6 Consensus size: 32
16963717 GGAATATCTA
*
16963727 AATATATTATATATCTTTTGGTTATATATTTAAG
1 AATATATTATATATCTTTT--TCATATATTTAAG
*
16963761 AATATATTATATATC-TTTTCATATATTTAGG
1 AATATATTATATATCTTTTTCATATATTTAAG
*
16963792 AAT-TATCATATATCTTT
1 AATATATTATATATCTTT
16963809 CCTATAAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
30 10 0.23
31 16 0.36
33 3 0.07
34 15 0.34
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (32 bp):
AATATATTATATATCTTTTTCATATATTTAAG
Found at i:16963805 original size:30 final size:31
Alignment explanation
Indices: 16963727--16963808 Score: 94
Period size: 34 Copynumber: 2.6 Consensus size: 31
16963717 GGAATATCTA
* *
16963727 AATATATTATATATCTTTTGGTTATATATTTAAG
1 AATATATCATATATC-TTT--TCATATATTTAAG
* *
16963761 AATATATTATATATCTTTTCATATATTTAGG
1 AATATATCATATATCTTTTCATATATTTAAG
16963792 AAT-TATCATATATCTTT
1 AATATATCATATATCTTT
16963809 CCTATAAATA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
30 13 0.29
31 14 0.31
33 3 0.07
34 15 0.33
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (31 bp):
AATATATCATATATCTTTTCATATATTTAAG
Found at i:16975204 original size:25 final size:26
Alignment explanation
Indices: 16975176--16975272 Score: 105
Period size: 25 Copynumber: 3.9 Consensus size: 26
16975166 CACACCACAA
16975176 CTCTCATGAGCTTCCCGATTA-ACAG
1 CTCTCATGAGCTTCCCGATTATACAG
* * **
16975201 CTCTCTTGAGCTTCTCGA-TATTTAG
1 CTCTCATGAGCTTCCCGATTATACAG
*
16975226 CTCACATGAGCTTCCCG-TTATACAG
1 CTCTCATGAGCTTCCCGATTATACAG
16975251 CT-TACATGAGCTTCCCG-TTATA
1 CTCT-CATGAGCTTCCCGATTATA
16975273 TGGCTCGAAA
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
24 2 0.03
25 57 0.97
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.34
Consensus pattern (26 bp):
CTCTCATGAGCTTCCCGATTATACAG
Found at i:16975311 original size:25 final size:25
Alignment explanation
Indices: 16975231--16975300 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
16975221 TTTAGCTCAC
** *
16975231 ATGAGCTTCCCGTTATACAGCT-TA
1 ATGAGCTTCCCGTTATATGGCTCGA
16975255 CATGAGCTTCCCGTTATATGGCTCGA
1 -ATGAGCTTCCCGTTATATGGCTCGA
*
16975281 AAGAGCTTCCCGTTTATATG
1 ATGAGCTTCCCG-TTATATG
16975301 TTTGTATGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
25 31 0.79
26 8 0.21
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATATGGCTCGA
Found at i:16980950 original size:16 final size:16
Alignment explanation
Indices: 16980919--16980949 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
16980909 ATATTTTAAA
16980919 AAAGAATCCGCGTTTT
1 AAAGAATCCGCGTTTT
16980935 AAAGAATCCGC-TTTT
1 AAAGAATCCGCGTTTT
16980950 TCTTTATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (16 bp):
AAAGAATCCGCGTTTT
Found at i:16986774 original size:16 final size:16
Alignment explanation
Indices: 16986755--16986788 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
16986745 GATGAAAGCA
* *
16986755 AAAGTGCAAGCTCTGC
1 AAAGTACAAGCTCAGC
16986771 AAAGTACAAGCTCAGC
1 AAAGTACAAGCTCAGC
16986787 AA
1 AA
16986789 GATGTGTGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.24, G:0.21, T:0.15
Consensus pattern (16 bp):
AAAGTACAAGCTCAGC
Found at i:16986946 original size:46 final size:46
Alignment explanation
Indices: 16986853--16986966 Score: 122
Period size: 46 Copynumber: 2.5 Consensus size: 46
16986843 ACGAGCTCAA
* * * *
16986853 CAAAAATGCGAGCCCTGT-AAAGTTGCGAGCTTGTTGATGACAATAAG
1 CAAAAATGCGAG-CCTGTCAAA-ATGAGAGCTTATTGAAGACAATAAG
* ** * *
16986900 CCAAGGTGCGAGCTTGTCAAAATGAGAGCTTATTGAAGACAGTAAG
1 CAAAAATGCGAGCCTGTCAAAATGAGAGCTTATTGAAGACAATAAG
16986946 CAAAAATGCGAGCCTGTCAAA
1 CAAAAATGCGAGCCTGTCAAA
16986967 GGTGCGAGCT
Statistics
Matches: 53, Mismatches: 13, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
46 41 0.77
47 12 0.23
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (46 bp):
CAAAAATGCGAGCCTGTCAAAATGAGAGCTTATTGAAGACAATAAG
Found at i:16988082 original size:27 final size:27
Alignment explanation
Indices: 16988052--16988112 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
16988042 GACTGATAGA
*
16988052 CGGCACCGATGGTGCCATTCCCATTGG
1 CGGCACCGATGGTGCCATTCCCATGGG
16988079 CGGCACCGATGGTGCCATTCCCATGGG
1 CGGCACCGATGGTGCCATTCCCATGGG
16988106 CGGCACC
1 CGGCACC
16988113 ATTCGTGTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.15, C:0.36, G:0.31, T:0.18
Consensus pattern (27 bp):
CGGCACCGATGGTGCCATTCCCATGGG
Found at i:16988475 original size:40 final size:36
Alignment explanation
Indices: 16988415--16988500 Score: 93
Period size: 40 Copynumber: 2.3 Consensus size: 36
16988405 AAACTAGTAT
* * *
16988415 TATTATTATGGTTAGTTATTATTTTTAGTA-AAACCC
1 TATTATTATTGTTAGTTATTATTTTGAGTATAAA-AC
16988451 TAATTATTATTGTTAGTTACTATTATTTTGAGTATAAAAC
1 T-ATTATTATTGTTAG-T--TATTATTTTGAGTATAAAAC
16988491 TATTATTATT
1 TATTATTATT
16988501 TTTATTGTGT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
36 1 0.02
37 13 0.31
38 1 0.02
39 9 0.21
40 15 0.36
41 3 0.07
ACGTcount: A:0.33, C:0.06, G:0.09, T:0.52
Consensus pattern (36 bp):
TATTATTATTGTTAGTTATTATTTTGAGTATAAAAC
Found at i:16995245 original size:284 final size:285
Alignment explanation
Indices: 16994544--16995404 Score: 1512
Period size: 284 Copynumber: 3.0 Consensus size: 285
16994534 ATTATGTTTG
*
16994544 AAATTTATTAATTTAGTGTGTTTTTTAAATTAATTTAGTGTCAAAAAAACCCTTATTCCTGCCCG
1 AAATTTATTAATTTAGTGTGTTTTTTAAATTAATTTAGTGTCAAAAAAACCCTTATTCCTGCCCT
*
16994609 TTACTCGTATTATTTTCCTGAATTTTATTATTTTCAATAAAAAATATTATTTTCGTATTTTATTA
66 TTACTCGTATTATTTTCCTGAATTTTATTACTTTCAATAAAAAATATTATTTTCGTATTTTATTA
16994674 TTTTATATTATTTCAGTACATTTTGTTCT-AAATATTTGTATTAATTATTTCTGAATTTTTAAAA
131 TTTTATATTATTTCAGTACATTTTGTT-TGAAATATTTGTATTAATTATTTCTGAATTTTTAAAA
* *
16994738 AAATTAGTAAAACACTCTTACTTCGGTCATTTCTTCATATTTTTTTCTCCGCATTTTATTACTTT
195 AATTTAGTAAAACACTCTTACTTCGGTCATTTCTTCGTATTTTTTTCTCCGCATTTTATTACTTT
16994803 AAAAAATATCATAATTTCTAATTTTAT
260 -AAAAATATCATAATTTCTAATTTTAT
* * *
16994830 AAATTTATAAATTTATTGTG-TTTTTAAATTAATTTAGTGTCAAAAAAACCCTTATTCCGGCCCT
1 AAATTTATTAATTTAGTGTGTTTTTTAAATTAATTTAGTGTCAAAAAAACCCTTATTCCTGCCCT
* * * *
16994894 TTGCTCGTATTATTTTCCCGAATTTTGTTACTTTCAATAAAAAATATTATTTTTGTATTTTATTA
66 TTACTCGTATTATTTTCCTGAATTTTATTACTTTCAATAAAAAATATTATTTTCGTATTTTATTA
*
16994959 TTTTATATTATTTCAGTACATTTTGTTTGAAATATTTGTATTAATTATTTCTGAATTCTTAAAAA
131 TTTTATATTATTTCAGTACATTTTGTTTGAAATATTTGTATTAATTATTTCTGAATTTTTAAAAA
* *
16995024 ATTTAGTAAAACACTCTTACTTCGGTCATTTCTTCGTATTTTTTTCTCTGTATTTTATTACTTTA
196 ATTTAGTAAAACACTCTTACTTCGGTCATTTCTTCGTATTTTTTTCTCCGCATTTTATTACTTTA
16995089 AAAATATCATAATTTCTAATTTTAT
261 AAAATATCATAATTTCTAATTTTAT
16995114 AAATTTATTAATTTAGTGTGTTTTTTAAATTAATTTAGTGT-AAAAAAACCCTTATTCCTGCCCT
1 AAATTTATTAATTTAGTGTGTTTTTTAAATTAATTTAGTGTCAAAAAAACCCTTATTCCTGCCCT
*
16995178 TTACTTGTATTATTTTCCTGAATTTTATTACTTTCAATAAAAAATATTATTTTCGTATTTTATTA
66 TTACTCGTATTATTTTCCTGAATTTTATTACTTTCAATAAAAAATATTATTTTCGTATTTTATTA
* *
16995243 TTTTATATTATTTCAGTACATTTTGTTTGAAATATTTGTATTAATTATTTTTGAATTTTTATAAA
131 TTTTATATTATTTCAGTACATTTTGTTTGAAATATTTGTATTAATTATTTCTGAATTTTTAAAAA
*
16995308 ATTTAGTAAAACACTCTTACTTCGGTCATTTCTTCGTATTTTTTTCTCCACATTTTATTACTTTA
196 ATTTAGTAAAACACTCTTACTTCGGTCATTTCTTCGTATTTTTTTCTCCGCATTTTATTACTTTA
16995373 AAAATATCATAATTTCTAATTTTAT
261 AAAATATCATAATTTCTAATTTTAT
*
16995398 AATTTTA
1 AAATTTA
16995405 CTTTATTTCA
Statistics
Matches: 544, Mismatches: 29, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
284 282 0.52
285 244 0.45
286 18 0.03
ACGTcount: A:0.31, C:0.11, G:0.07, T:0.51
Consensus pattern (285 bp):
AAATTTATTAATTTAGTGTGTTTTTTAAATTAATTTAGTGTCAAAAAAACCCTTATTCCTGCCCT
TTACTCGTATTATTTTCCTGAATTTTATTACTTTCAATAAAAAATATTATTTTCGTATTTTATTA
TTTTATATTATTTCAGTACATTTTGTTTGAAATATTTGTATTAATTATTTCTGAATTTTTAAAAA
ATTTAGTAAAACACTCTTACTTCGGTCATTTCTTCGTATTTTTTTCTCCGCATTTTATTACTTTA
AAAATATCATAATTTCTAATTTTAT
Found at i:16995780 original size:42 final size:42
Alignment explanation
Indices: 16995733--16995817 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
16995723 ACAAATATTA
16995733 CGAAAAATTAAAATTAATAATAAAAATTACCTTTTTTTCTTT
1 CGAAAAATTAAAATTAATAATAAAAATTACCTTTTTTTCTTT
16995775 CGAAAAATTAAAATTAATAATAAAAATTACCTTTTTTTCTTT
1 CGAAAAATTAAAATTAATAATAAAAATTACCTTTTTTTCTTT
16995817 C
1 C
16995818 TTTTTTCTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.45, C:0.11, G:0.02, T:0.42
Consensus pattern (42 bp):
CGAAAAATTAAAATTAATAATAAAAATTACCTTTTTTTCTTT
Found at i:16995872 original size:5 final size:5
Alignment explanation
Indices: 16995864--16995928 Score: 53
Period size: 5 Copynumber: 13.4 Consensus size: 5
16995854 TTTTCTCTTC
* * * *
16995864 TCCTT TCCTT TTCTT TCC-T TCTTT TTCTT T-CTT TCCTC TCCTT TCCTT
1 TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT
* * *
16995912 TTCTT TCTTT TTCTT TC
1 TCCTT TCCTT TCCTT TC
16995929 TTCTTTTTTC
Statistics
Matches: 45, Mismatches: 13, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
4 7 0.16
5 38 0.84
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (5 bp):
TCCTT
Found at i:16995881 original size:10 final size:10
Alignment explanation
Indices: 16995866--16995928 Score: 69
Period size: 10 Copynumber: 6.5 Consensus size: 10
16995856 TTCTCTTCTC
16995866 CTTTCCTTTT
1 CTTTCCTTTT
16995876 CTTTCCTTCTT
1 CTTTCCTT-TT
16995887 -TTT-C-TTT
1 CTTTCCTTTT
* *
16995894 CTTTCCTCTC
1 CTTTCCTTTT
16995904 CTTTCCTTTT
1 CTTTCCTTTT
*
16995914 CTTTCTTTTT
1 CTTTCCTTTT
16995924 CTTTC
1 CTTTC
16995929 TTCTTTTTTC
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
7 2 0.05
8 4 0.09
9 2 0.05
10 34 0.77
11 2 0.05
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (10 bp):
CTTTCCTTTT
Found at i:16995891 original size:14 final size:14
Alignment explanation
Indices: 16995872--16995934 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
16995862 TCTCCTTTCC
16995872 TTTTCTTTCCTTCT
1 TTTTCTTTCCTTCT
* *
16995886 TTTTCTTTCTTTCC
1 TTTTCTTTCCTTCT
* *
16995900 TCTCCTTTCCTT-T
1 TTTTCTTTCCTTCT
16995913 TCTTTCTTT--TTCT
1 T-TTTCTTTCCTTCT
16995926 TTCTTCTTT
1 TT-TTCTTT
16995935 TTTCCCTCTC
Statistics
Matches: 38, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
12 3 0.08
13 9 0.24
14 26 0.68
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTCTTTCCTTCT
Found at i:16995904 original size:38 final size:40
Alignment explanation
Indices: 16995840--16995947 Score: 125
Period size: 38 Copynumber: 2.7 Consensus size: 40
16995830 CCCCTCTTCT
* *
16995840 TCTTC-TTCTTTTATTTTTCTCTTCTCCTTTCCTTTTCTTTC
1 TCTTCTTTCTTCT-TTTTTC-CCTCTCCTTTCCTTTTCTTTC
16995881 -CTTCTTT-TTCTTTCTTT-CCTCTCCTTTCCTTTTCTTTC
1 TCTTCTTTCTTCTTT-TTTCCCTCTCCTTTCCTTTTCTTTC
*
16995919 TTTTTCTTTCTTCTTTTTTCCCTCTCCTT
1 -TCTTCTTTCTTCTTTTTTCCCTCTCCTT
16995948 CTCTTCCCCC
Statistics
Matches: 58, Mismatches: 3, Indels: 12
0.79 0.04 0.16
Matches are distributed among these distances:
38 20 0.34
39 2 0.03
40 19 0.33
41 17 0.29
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (40 bp):
TCTTCTTTCTTCTTTTTTCCCTCTCCTTTCCTTTTCTTTC
Found at i:16995939 original size:30 final size:30
Alignment explanation
Indices: 16995866--16995928 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 30
16995856 TTCTCTTCTC
* *
16995866 CTTTCCTTTTCTTTCC--TTCTTTTTCTTT
1 CTTTCCTCTCCTTTCCTTTTCTTTTTCTTT
16995894 CTTTCCTCTCCTTTCCTTTTCTTTCTT-TTT
1 CTTTCCTCTCCTTTCCTTTTCTTT-TTCTTT
16995924 CTTTC
1 CTTTC
16995929 TTCTTTTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 14 0.47
30 14 0.47
31 2 0.07
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (30 bp):
CTTTCCTCTCCTTTCCTTTTCTTTTTCTTT
Found at i:16996022 original size:27 final size:27
Alignment explanation
Indices: 16995992--16996056 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
16995982 ATATGGGTAA
* *
16995992 TGCCGCCCATGGGAATGGCACCATCGG
1 TGCCGCCCATGAGAAAGGCACCATCGG
* * *
16996019 TGCCGCCTATGAGAAAGGCACCTTTGG
1 TGCCGCCCATGAGAAAGGCACCATCGG
16996046 TGCCGCCCATG
1 TGCCGCCCATG
16996057 CTCCACCAGG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.18
Consensus pattern (27 bp):
TGCCGCCCATGAGAAAGGCACCATCGG
Found at i:16997691 original size:19 final size:19
Alignment explanation
Indices: 16997669--16997708 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
16997659 ATAAATAATG
16997669 TAATTATTAT-TTTCATATA
1 TAATTATTATCTTTC-TATA
*
16997688 TAATTATTTTCTTTCTATA
1 TAATTATTATCTTTCTATA
16997707 TA
1 TA
16997709 TTTGTATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (19 bp):
TAATTATTATCTTTCTATA
Found at i:17002699 original size:15 final size:15
Alignment explanation
Indices: 17002676--17002706 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
17002666 AGATTCTAAA
17002676 AAAAAAATCAAAATC
1 AAAAAAATCAAAATC
*
17002691 AAAAGAATCAAAATC
1 AAAAAAATCAAAATC
17002706 A
1 A
17002707 TGAAAAAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.13, G:0.03, T:0.13
Consensus pattern (15 bp):
AAAAAAATCAAAATC
Found at i:17004104 original size:44 final size:44
Alignment explanation
Indices: 17004056--17004898 Score: 708
Period size: 44 Copynumber: 19.1 Consensus size: 44
17004046 TAGGTTGAAA
* *
17004056 ATAGCAGATATTGTCTTTATGTATTGGCGTGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
* * * * *
17004100 ATAGCAGGT-TCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG
1 ATAGCAGATCT-TGTCTTCATGTATTGG-CGTGAAGTAGATCGAAG
* * *** * *
17004144 GT-GCATATCTTGTCTTCCCATACTGGTG-GCAAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCATGTATTGGCGTG--AAGTAGATCGAAG
*
17004188 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
* * * * * * * * * *
17004232 AAAGTAAATCTTATCTTCCTATATTGGTAGCGAAGTGGATTGAAG
1 ATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAG
*** * * * *
17004277 ATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAG
1 ATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAG
*
17004322 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
* * * * * * * * * *
17004366 AAAGTAAATCTTATCTTCCTATATTGGTAGCGAAGTGGATTGAAG
1 ATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAG
*** * * *
17004411 ATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAG
* * *
17004456 AAAGCAGATCTTGTCTTCATGTATCGGCGTGAAGTAGATCAAAG
1 ATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
* * *
17004500 GTAGCAGATTTTATCTTCATGTATTGGCGTGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
* ** * * ** *
17004544 AAAATAGATCTTTTCTTCATGTATCGGTATGAAGTAGATCAAAG
1 ATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
* * *
17004588 GTAGAAGATCTTGTCTTCATGTATTTGCGTGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
* *** * * *
17004632 AAAATGGATCTTGTCTTCATGTATCGGCATGAAGTAGATCAAAG
1 ATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
* **
17004676 GTAAAAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
* *** * * *
17004720 AAAATGGATCTTGTCTTCATGTATCGGCATGAACTAGATC-AATG
1 ATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAA-G
* * * * *
17004764 GTAGAAGATCTTGTCTTCATGTATCGGCATGAAGTAGATCAAAG
1 ATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
* * *
17004808 GTAGAAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
* * *
17004852 AT-GACAGATATTGTCTTCATGTATTGGCATGAAGTAGATCAAAG
1 ATAG-CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
17004896 ATA
1 ATA
17004899 TAAATCTTAT
Statistics
Matches: 646, Mismatches: 140, Indels: 25
0.80 0.17 0.03
Matches are distributed among these distances:
42 2 0.00
43 22 0.03
44 458 0.71
45 163 0.25
46 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (44 bp):
ATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
Found at i:17004336 original size:134 final size:134
Alignment explanation
Indices: 17004058--17004634 Score: 743
Period size: 134 Copynumber: 4.3 Consensus size: 134
17004048 GGTTGAAAAT
* * * ** *
17004058 AGCAGATATTGTCTTTATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGT-TCTGTCTTCCTAT
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAGCAAATCT-TATCTTCCTAT
* * * *
17004122 ATTGGTAG-GAAGTGGATCGAAGGT-GCATATCTTGTCTTCCCATACTGGTGGCAAAGTAGATCG
65 ATTGGTAGCGAAGTGGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCA
17004185 AAGAA
130 AAGAA
*
17004190 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAGTAAATCTTATCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAGCAAATCTTATCTTCCTATA
*
17004255 TTGGTAGCGAAGTGGATTGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAA
66 TTGGTAGCGAAGTGGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAA
17004320 AGAA
131 AGAA
*
17004324 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAGTAAATCTTATCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAGCAAATCTTATCTTCCTATA
* *
17004389 TTGGTAGCGAAGTGGATTGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
66 TTGGTAGCGAAGTGGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAA
17004454 AGAA
131 AGAA
* * ** * * * *
17004458 AGCAGATCTTGTCTTCATGTATCGGCGTGAAGTAGATCAAAGGTAGCAGATTTTATCTTCATGTA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAGCAAATCTTATCTTCCTATA
* * * * ** * *** **
17004523 TTGG-CGTGAAGTAGATCGAAGAAAATAGATCTTTTCTTCATGTA-TCGGT-ATGAAGTAGATCA
66 TTGGTAGCGAAGTGGATCGAAGATAGCAGATCTTGTCTTCCCATACT-GGTGGCGAAGTAGATCA
**
17004585 AAGGT
130 AAGAA
* *
17004590 AGAAGATCTTGTCTTCATGTATTTGCGTGAAGTAGATCGAAGAAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAA
17004635 ATGGATCTTG
Statistics
Matches: 397, Mismatches: 44, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
132 116 0.29
133 47 0.12
134 234 0.59
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (134 bp):
AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAGCAAATCTTATCTTCCTATA
TTGGTAGCGAAGTGGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAA
AGAA
Found at i:17004998 original size:44 final size:44
Alignment explanation
Indices: 17004901--17005013 Score: 129
Period size: 44 Copynumber: 2.6 Consensus size: 44
17004891 CAAAGATATA
* ** *
17004901 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAGGCCTAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGAACTAC
* ** *
17004945 AATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAA-AATTAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGAACTAC
*
17004988 AGATCTTATCTCTCTGAAGTTGCAGT
1 A-ATCTTATCTCCCTGAAGTTGCAGT
17005014 AGGGTAGATC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 3 0.05
44 55 0.95
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGAACTAC
Found at i:17006587 original size:19 final size:18
Alignment explanation
Indices: 17006565--17006602 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
17006555 TAAATAATGA
17006565 AATTATTATTTTCATATAT
1 AATTATTATTTTC-TATAT
*
17006584 AATTATTTTTTTCTATAT
1 AATTATTATTTTCTATAT
17006602 A
1 A
17006603 TTTGTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (18 bp):
AATTATTATTTTCTATAT
Found at i:17012552 original size:23 final size:20
Alignment explanation
Indices: 17012501--17012552 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 20
17012491 AATTTTGTTC
17012501 AATTTTAATTTTTATTCAAA
1 AATTTTAATTTTTATTCAAA
17012521 AATACTTTAATTTATTATATCTAAA
1 AAT--TTTAATTT-TTAT-TC-AAA
*
17012546 CATTTTA
1 AATTTTA
17012553 TCAAACAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
20 3 0.12
22 8 0.31
23 8 0.31
24 2 0.08
25 5 0.19
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (20 bp):
AATTTTAATTTTTATTCAAA
Found at i:17015674 original size:33 final size:33
Alignment explanation
Indices: 17015637--17015713 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 33
17015627 AGTATGGCGA
*
17015637 TGGATAC-AGGCCGAAAGAAGCAGAGTATTGAGG
1 TGGATACGA-GCCGAAAGAAGCAGAGTACTGAGG
* * *
17015670 TGGATACGAGCCGGAAGGAGCGGAGTACTGAGG
1 TGGATACGAGCCGAAAGAAGCAGAGTACTGAGG
17015703 TGGATACGAGC
1 TGGATACGAGC
17015714 TAGGATGACT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
33 38 0.97
34 1 0.03
ACGTcount: A:0.31, C:0.14, G:0.40, T:0.14
Consensus pattern (33 bp):
TGGATACGAGCCGAAAGAAGCAGAGTACTGAGG
Found at i:17015729 original size:33 final size:33
Alignment explanation
Indices: 17015655--17015738 Score: 100
Period size: 33 Copynumber: 2.5 Consensus size: 33
17015645 GGCCGAAAGA
* *
17015655 AGCAGAGTATTGAGGTGGATACGAGCCGGAAGG
1 AGCAGAGTACTGAGGTGGATACGAGCAGGAAGG
* *
17015688 AGCGGAGTACTGAGGTGGATACGAGCTAGG-ATG
1 AGCAGAGTACTGAGGTGGATACGAGC-AGGAAGG
17015721 A-CTAGAGTACTGAGGTGG
1 AGC-AGAGTACTGAGGTGG
17015739 TAGTGGGCTG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
32 1 0.02
33 41 0.93
34 2 0.05
ACGTcount: A:0.29, C:0.12, G:0.42, T:0.18
Consensus pattern (33 bp):
AGCAGAGTACTGAGGTGGATACGAGCAGGAAGG
Found at i:17015868 original size:12 final size:12
Alignment explanation
Indices: 17015851--17015888 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
17015841 ATGTAGTTCC
17015851 GGCTCCGGCTCT
1 GGCTCCGGCTCT
17015863 GGCTCCGGCTCT
1 GGCTCCGGCTCT
*
17015875 GGCTCTGGCTCT
1 GGCTCCGGCTCT
17015887 GG
1 GG
17015889 TGCATGATGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.00, C:0.37, G:0.37, T:0.26
Consensus pattern (12 bp):
GGCTCCGGCTCT
Found at i:17015871 original size:18 final size:18
Alignment explanation
Indices: 17015848--17015885 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
17015838 AGAATGTAGT
17015848 TCCGGCTCCGGCTCTGGC
1 TCCGGCTCCGGCTCTGGC
*
17015866 TCCGGCTCTGGCTCTGGC
1 TCCGGCTCCGGCTCTGGC
17015884 TC
1 TC
17015886 TGGTGCATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.00, C:0.42, G:0.32, T:0.26
Consensus pattern (18 bp):
TCCGGCTCCGGCTCTGGC
Found at i:17015886 original size:6 final size:6
Alignment explanation
Indices: 17015851--17015888 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
17015841 ATGTAGTTCC
* *
17015851 GGCTCC GGCTCT GGCTCC GGCTCT GGCTCT GGCTCT GG
1 GGCTCT GGCTCT GGCTCT GGCTCT GGCTCT GGCTCT GG
17015889 TGCATGATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.37, G:0.37, T:0.26
Consensus pattern (6 bp):
GGCTCT
Found at i:17018285 original size:66 final size:66
Alignment explanation
Indices: 17018179--17018309 Score: 253
Period size: 66 Copynumber: 2.0 Consensus size: 66
17018169 ATATCCTACT
17018179 TGTTATTGTAGATAAAAATATCCATATCCCATATTTTTTCACACAGCCAAAACTCTACTCCCATT
1 TGTTATTGTAGATAAAAATATCCATATCCCATATTTTTTCACACAGCCAAAACTCTACTCCCATT
17018244 A
66 A
*
17018245 TGTTATTGTAGATAAAAATATTCATATCCCATATTTTTTCACACAGCCAAAACTCTACTCCCATT
1 TGTTATTGTAGATAAAAATATCCATATCCCATATTTTTTCACACAGCCAAAACTCTACTCCCATT
17018310 GCTCAAAATA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.36
Consensus pattern (66 bp):
TGTTATTGTAGATAAAAATATCCATATCCCATATTTTTTCACACAGCCAAAACTCTACTCCCATT
A
Found at i:17018308 original size:32 final size:32
Alignment explanation
Indices: 17018205--17018308 Score: 90
Period size: 32 Copynumber: 3.2 Consensus size: 32
17018195 AATATCCATA
17018205 TCCCATATTTTTTCACACAGCCAAAACTCTAC
1 TCCCATATTTTTTCACACAGCCAAAACTCTAC
* * * *
17018237 TCCCATTATGTTATTGT-AGATA--AAAATATTCATA-
1 TCCCA-TAT-TT-TT-TCACACAGCCAAA-ACTC-TAC
17018271 TCCCATATTTTTTCACACAGCCAAAACTCTAC
1 TCCCATATTTTTTCACACAGCCAAAACTCTAC
17018303 TCCCAT
1 TCCCAT
17018309 TGCTCAAAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 20
0.66 0.10 0.24
Matches are distributed among these distances:
30 1 0.02
31 7 0.13
32 16 0.30
33 12 0.22
34 10 0.19
35 7 0.13
36 1 0.02
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.35
Consensus pattern (32 bp):
TCCCATATTTTTTCACACAGCCAAAACTCTAC
Found at i:17018596 original size:35 final size:35
Alignment explanation
Indices: 17018552--17018619 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
17018542 AGTTGATATA
*
17018552 AAAAAAATTAAATGAGTTAACAACAACTATTAAAT
1 AAAAAAATTAAATAAGTTAACAACAACTATTAAAT
*
17018587 AAAAAAATTAAATAAGTTAACAGCAACTATTAA
1 AAAAAAATTAAATAAGTTAACAACAACTATTAA
17018620 CATACCAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.60, C:0.09, G:0.06, T:0.25
Consensus pattern (35 bp):
AAAAAAATTAAATAAGTTAACAACAACTATTAAAT
Found at i:17019014 original size:27 final size:27
Alignment explanation
Indices: 17018976--17019034 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
17018966 GCTTACTTGT
* *
17018976 CAGGCTCGATTAGTCGTGTCTATCTGA
1 CAGGCTCGATTAATCGCGTCTATCTGA
17019003 CAGGCTCGATTAATCGCGTCTATCTGA
1 CAGGCTCGATTAATCGCGTCTATCTGA
17019030 CAGGC
1 CAGGC
17019035 GCAACCTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.29
Consensus pattern (27 bp):
CAGGCTCGATTAATCGCGTCTATCTGA
Found at i:17022593 original size:18 final size:18
Alignment explanation
Indices: 17022570--17022605 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
17022560 CAATACCCCT
17022570 TCATCCTCGCCGCTCTCA
1 TCATCCTCGCCGCTCTCA
17022588 TCATCCTCGCCGCTCTCA
1 TCATCCTCGCCGCTCTCA
17022606 AAACCGACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.50, G:0.11, T:0.28
Consensus pattern (18 bp):
TCATCCTCGCCGCTCTCA
Found at i:17025863 original size:24 final size:24
Alignment explanation
Indices: 17025836--17025885 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
17025826 AGATGTCGGT
17025836 GCTGAACCCCATGTTAGGGCAGAC
1 GCTGAACCCCATGTTAGGGCAGAC
17025860 GCTGAACCCCATGTTAGGGCAGAC
1 GCTGAACCCCATGTTAGGGCAGAC
17025884 GC
1 GC
17025886 ATCGCCACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.30, G:0.30, T:0.16
Consensus pattern (24 bp):
GCTGAACCCCATGTTAGGGCAGAC
Found at i:17029758 original size:29 final size:31
Alignment explanation
Indices: 17029726--17029789 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 31
17029716 CAAGGGTTAA
*
17029726 TTTTAATTTTTG-AATATT-ATTTAATATTT
1 TTTTAATTTATGTAATATTAATTTAATATTT
* *
17029755 TTTT-ATTTATGTAATTTTAATTTTATATTT
1 TTTTAATTTATGTAATATTAATTTAATATTT
17029785 TTTTA
1 TTTTA
17029790 TAATAGCCTG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 6 0.21
29 9 0.31
30 14 0.48
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (31 bp):
TTTTAATTTATGTAATATTAATTTAATATTT
Found at i:17031916 original size:32 final size:30
Alignment explanation
Indices: 17031856--17031942 Score: 79
Period size: 32 Copynumber: 2.8 Consensus size: 30
17031846 TAAACACACA
* *
17031856 AATTATTAAAAAAACTAAACCCTAATTTAATT
1 AATT-TTAAAAAATCTAAACCTTAATTT-ATT
*
17031888 AATTTTAAAAAAGTCTAAACCTTGATTTATT
1 AATTTTAAAAAA-TCTAAACCTTAATTTATT
*
17031919 --TTTAAAAAAATTCTTAAACCTTAA
1 AATTTTAAAAAA-TC-TAAACCTTAA
17031943 ATAAATAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
29 11 0.23
30 9 0.19
31 11 0.23
32 16 0.34
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.38
Consensus pattern (30 bp):
AATTTTAAAAAATCTAAACCTTAATTTATT
Found at i:17032555 original size:11 final size:11
Alignment explanation
Indices: 17032526--17032555 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
17032516 TCATTCATGC
17032526 TTTTTTTTCTT
1 TTTTTTTTCTT
*
17032537 CTTTTTTTCTT
1 TTTTTTTTCTT
17032548 TTTTTTTT
1 TTTTTTTT
17032556 TTACATTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:17035626 original size:17 final size:17
Alignment explanation
Indices: 17035600--17035637 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
17035590 TTAAGCTTTA
17035600 TTTT-TTATTTTATTAT
1 TTTTATTATTTTATTAT
* *
17035616 TTTTATTATTTTGTTTT
1 TTTTATTATTTTATTAT
17035633 TTTTA
1 TTTTA
17035638 AACGAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTATTATTTTATTAT
Found at i:17043432 original size:42 final size:42
Alignment explanation
Indices: 17043376--17043513 Score: 138
Period size: 42 Copynumber: 3.2 Consensus size: 42
17043366 TTGCAGATCT
17043376 TATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGTCCTCAGCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGTCCTCAGCC
* * * * * *
17043418 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAT--TACAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTG-AAGTCCT-CAG--CC
*
17043462 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCC-CTAGCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGTCCTC-AGCC
17043504 TTATCTCCCT
1 -TATCTCCCT
17043514 GAGTAGCAGC
Statistics
Matches: 75, Mismatches: 13, Indels: 15
0.73 0.13 0.15
Matches are distributed among these distances:
41 1 0.01
42 30 0.40
43 16 0.21
44 28 0.37
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (42 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGTCCTCAGCC
Found at i:17043504 original size:86 final size:86
Alignment explanation
Indices: 17043359--17043593 Score: 337
Period size: 86 Copynumber: 2.7 Consensus size: 86
17043349 ACGAAGCAGA
* * *
17043359 TTGAAGATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGT-CCTCAGCCTATCT
1 TTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCT-AGCCTATCT
*
17043423 CCCTGAGCAGCAGTGGAGTAGG
65 CCCTGAGCAGCAGCGGAGTAGG
17043445 TTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCTAGCCTTATCT
1 TTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCTAGCC-TATCT
*
17043510 CCCTGAGTAGCAGCGGAGTAGG
65 CCCTGAGCAGCAGCGGAGTAGG
* * * * *
17043532 TTAAAAAAATTACAGATCTTATCTCCTTAAGCAGTAGTGGAGTAGATCGAAGACACTAGCCT
1 TT--GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCTAGCCT
17043594 TGCCTCCCTT
Statistics
Matches: 135, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
86 52 0.39
87 30 0.22
88 1 0.01
89 52 0.39
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (86 bp):
TTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCTAGCCTATCTC
CCTGAGCAGCAGCGGAGTAGG
Found at i:17043579 original size:89 final size:87
Alignment explanation
Indices: 17043369--17043759 Score: 339
Period size: 89 Copynumber: 4.5 Consensus size: 87
17043359 TTGAAGATTG
*
17043369 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGT-CCTCAGCC-TATCTCCCTGAGCA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCT-AGCCTTATCTCCCTGAGCA
* *
17043432 GCAGTGGAGTAGGTTGAAAATTA
65 GCAGCGGAGTAGGTTAAAAATTA
*
17043455 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCTAGCCTTATCTCCCTGAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCTAGCCTTATCTCCCTGAGCAG
17043520 CAGCGGAGTAGGTTAAAAAAATTA
66 CAGCGGAGTAGGTT--AAAAATTA
* * * * ** **
17043544 CAGATCTTATCTCCTTAAGCAGTAGTGGAGTAGATCGAAGACACTAGCCTTGCCTCCCTTG-GTG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCTAGCCTTATCTCCC-TGAGCA
* * * *
17043608 GCAACGGAGCAGGCTAAAGA-TA
65 GCAGCGGAGTAGGTTAAAAATTA
** * * * * * ** * *
17043630 GCAGATCTTGCCTTCCTGTA-CTGACAGTGAAGCAGATCGAAGAT-TGTGAATCC-TATCTCCTT
1 -CAGATCTTATCTCCCT-AAGCAG-TAGTGGAGCAGATCGAAG-TCCCT--AGCCTTATCTCCCT
* * *
17043692 G-GACAACAGTGGAATAGGTTAAAAATTA
60 GAG-CAGCAGCGGAGTAGGTTAAAAATTA
* *
17043720 CAGATCTTATCTCTCTAAGCAGTAGCGGAGCAGATCGAAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
17043760 ATACTAGCCT
Statistics
Matches: 242, Mismatches: 49, Indels: 26
0.76 0.15 0.08
Matches are distributed among these distances:
86 46 0.19
87 48 0.20
88 36 0.15
89 105 0.43
90 7 0.03
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (87 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCTAGCCTTATCTCCCTGAGCAG
CAGCGGAGTAGGTTAAAAATTA
Found at i:17043910 original size:44 final size:44
Alignment explanation
Indices: 17043861--17044147 Score: 279
Period size: 44 Copynumber: 6.7 Consensus size: 44
17043851 CCAGCCTTGC
* * *
17043861 CTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGAGAATTCTAT
1 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATCCTAT
* *
17043905 CTCCCTGGGCAGCAGTGGAATAGATT--A-A---AGAAT-CTCAT
1 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATCCT-AT
* * *
17043943 CTCCCTGGAT-AGCAGTGGAATAGGTTAAAGATTGTGAATCCTAC
1 CTCCCTGG-TCAGCAGTGGAATAGGTTGAAGATTGAGAATCCTAT
* *
17043987 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGAGAATTCTAT
1 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATCCTAT
* * * *
17044031 CTCCCTGGGCATCAGTGGAATAGATTGAAGATTGTAG-GTCCTAT
1 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG-AGAATCCTAT
* * * * *
17044075 CTCTCTGGTCAGGAGTGGAATAGGTTGAAGATCGTGAACCCTAT
1 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATCCTAT
* *
17044119 CTCCCTAAG-CAGCAGTGGAGTAGGTTGAA
1 CTCCCT-GGTCAGCAGTGGAATAGGTTGAA
17044148 AATAGCAGAT
Statistics
Matches: 198, Mismatches: 32, Indels: 26
0.77 0.12 0.10
Matches are distributed among these distances:
37 2 0.01
38 30 0.15
40 1 0.01
41 2 0.01
42 1 0.01
43 2 0.01
44 155 0.78
45 5 0.03
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (44 bp):
CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATCCTAT
Found at i:17044136 original size:132 final size:126
Alignment explanation
Indices: 17043860--17044147 Score: 348
Period size: 126 Copynumber: 2.2 Consensus size: 126
17043850 ACCAGCCTTG
* * * *
17043860 CCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGAGAATTCTATCTCCCTGGGCAGCAGTGGAA
1 CCTCCCTAGTCAGCAGTGGAATAGGTTGAAGACTGAGAATTCTATCTCCCTGGGCAGCAGTGGAA
* *
17043925 TAGATTAAAGAATCTCATCTCCCTGGATAGCAGTGGAATAGGTTAAAGATTGTGAATCCTA
66 TAGATTAAAGAATCTCATCTCCCTGGATAGCAGTGGAATAGGTTAAAGATCGTGAACCCTA
* *
17043986 CCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGAGAATTCTATCTCCCTGGGCATCAGTGGAA
1 CCTCCCTAGTCAGCAGTGGAATAGGTTGAAGACTGAGAATTCTATCTCCCTGGGCAGCAGTGGAA
* * * *
17044051 TAGATTGAAGATTGTAGGTC-CTATCTCTCTGG-TCAGGAGTGGAATAGGTTGAAGATCGTGAAC
66 TAGATT-AA-A--G-A-ATCTC-ATCTCCCTGGAT-AGCAGTGGAATAGGTTAAAGATCGTGAAC
17044114 CCTA
123 CCTA
* *
17044118 TCTCCCTAAG-CAGCAGTGGAGTAGGTTGAA
1 CCTCCCT-AGTCAGCAGTGGAATAGGTTGAA
17044148 AATAGCAGAT
Statistics
Matches: 140, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
126 67 0.48
127 2 0.01
128 1 0.01
130 1 0.01
131 3 0.02
132 65 0.46
133 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (126 bp):
CCTCCCTAGTCAGCAGTGGAATAGGTTGAAGACTGAGAATTCTATCTCCCTGGGCAGCAGTGGAA
TAGATTAAAGAATCTCATCTCCCTGGATAGCAGTGGAATAGGTTAAAGATCGTGAACCCTA
Found at i:17044528 original size:44 final size:43
Alignment explanation
Indices: 17044460--17044571 Score: 152
Period size: 44 Copynumber: 2.6 Consensus size: 43
17044450 GAAGATTGAG
* *
17044460 AATCTTATCTCCCTGAAGTTGCAGTTGAGTAGATTAAAACCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC-AT
* *
17044504 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAT
* *
17044547 AGATCTTATCTCTCTAAAGTTGCAG
1 A-ATCTTATCTCCCTGAAGTTGCAG
17044572 AGAGCAGGTT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 3 0.05
44 57 0.95
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAT
Found at i:17044948 original size:44 final size:43
Alignment explanation
Indices: 17044880--17045133 Score: 198
Period size: 44 Copynumber: 5.8 Consensus size: 43
17044870 CAAACGTACG
*
17044880 AATCTTATCTCCCCGAAGTTGCAGTGGAGCAGATTAAAGCCGA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGA
* * *
17044923 TAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAG-C-A
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA--AAGCCGA
* * ** **
17044968 AGTCTTATC-CTCCTAAAGTTGCAGT-GAGGCAGAAGAAAAGATGGCA
1 AATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAG-ATTAAAG-CCG-A
*
17045014 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGA
* * * *
17045057 TAATC-TATCTCCCTGAAGGTGCAGTGGAGCGGATTAAAATCTTG-
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGC-CGA
* *
17045101 AATCTTATCTCTCTGAAGTTGCAG-AGAGCAGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
17045134 CACATCTAGT
Statistics
Matches: 170, Mismatches: 24, Indels: 33
0.75 0.11 0.15
Matches are distributed among these distances:
42 3 0.02
43 42 0.25
44 83 0.49
45 10 0.06
46 26 0.15
47 6 0.04
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGA
Found at i:17060606 original size:28 final size:28
Alignment explanation
Indices: 17060574--17060635 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
17060564 TTTCCACATC
*
17060574 TCATATGTATCTTTTGCCAATATCAATT
1 TCATATGTATCTTTTGCCAATATCAATA
17060602 TCATATGTATCTTTTGCCAATATCAATA
1 TCATATGTATCTTTTGCCAATATCAATA
17060630 TCATAT
1 TCATAT
17060636 TTCCACATCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.18, G:0.06, T:0.45
Consensus pattern (28 bp):
TCATATGTATCTTTTGCCAATATCAATA
Found at i:17060650 original size:43 final size:43
Alignment explanation
Indices: 17060602--17060686 Score: 161
Period size: 43 Copynumber: 2.0 Consensus size: 43
17060592 AATATCAATT
17060602 TCATATGTATCTTTTGCCAATATCAATATCATATTTCCACATC
1 TCATATGTATCTTTTGCCAATATCAATATCATATTTCCACATC
*
17060645 TCATATGTATCTTTTGCCAATATCAATTTCATATTTCCACAT
1 TCATATGTATCTTTTGCCAATATCAATATCATATTTCCACAT
17060687 TTCTCCATCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.29, C:0.22, G:0.05, T:0.44
Consensus pattern (43 bp):
TCATATGTATCTTTTGCCAATATCAATATCATATTTCCACATC
Found at i:17065662 original size:22 final size:24
Alignment explanation
Indices: 17065607--17065662 Score: 57
Period size: 26 Copynumber: 2.4 Consensus size: 24
17065597 TTTCATAAGT
17065607 TTAAT-AAAAAATAAATACGATAATA
1 TTAATCAAAAAATAAATAC-AT-ATA
17065632 TT-ATACAAAAAATAAATAC-T-TA
1 TTAAT-CAAAAAATAAATACATATA
17065654 TTAATCAAA
1 TTAATCAAA
17065663 TTTAAACAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
22 8 0.29
23 2 0.07
24 3 0.11
25 2 0.07
26 13 0.46
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (24 bp):
TTAATCAAAAAATAAATACATATA
Found at i:17068344 original size:22 final size:22
Alignment explanation
Indices: 17068316--17068392 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
17068306 TTTCTTTTAA
17068316 TTAGGAGATTAGATGCTAAAGT
1 TTAGGAGATTAGATGCTAAAGT
** * *
17068338 TTAGGAGATAATATTTTGGTTTAA--
1 TTAGGAGAT--TA-GAT-GCTAAAGT
17068362 TTAGGAGATTAGATGCTAAAGT
1 TTAGGAGATTAGATGCTAAAGT
17068384 TTAGGAGAT
1 TTAGGAGAT
17068393 AATATTTTGG
Statistics
Matches: 41, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
20 4 0.10
21 1 0.02
22 20 0.49
24 11 0.27
25 1 0.02
26 4 0.10
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (22 bp):
TTAGGAGATTAGATGCTAAAGT
Found at i:17068361 original size:46 final size:46
Alignment explanation
Indices: 17068311--17068405 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
17068301 TCTATTTTCT
17068311 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
1 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
17068357 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
1 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
17068403 TTT
1 TTT
17068406 CTATCTTTGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.34, C:0.02, G:0.23, T:0.41
Consensus pattern (46 bp):
TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
Found at i:17069185 original size:101 final size:101
Alignment explanation
Indices: 17069059--17069262 Score: 381
Period size: 101 Copynumber: 2.0 Consensus size: 101
17069049 GTAAATGCGG
* *
17069059 GAATTGTACTTGTCAATTATCAGCCGAGTTGGAAAAGTGACGAGAAGAGGAAAAAGTTCACCACT
1 GAATTGTACTTGTCAATTATCAGCCGAGTTGGAAAAGCGACAAGAAGAGGAAAAAGTTCACCACT
*
17069124 TCTTGATGGGATTGGATGGGACATATAGCACGGTTA
66 TCCTGATGGGATTGGATGGGACATATAGCACGGTTA
17069160 GAATTGTACTTGTCAATTATCAGCCGAGTTGGAAAAGCGACAAGAAGAGGAAAAAGTTCACCACT
1 GAATTGTACTTGTCAATTATCAGCCGAGTTGGAAAAGCGACAAGAAGAGGAAAAAGTTCACCACT
17069225 TCCTGATGGGATTGGATGGGACATATAGCACGGTTA
66 TCCTGATGGGATTGGATGGGACATATAGCACGGTTA
17069261 GA
1 GA
17069263 TCTAGCATCT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
101 100 1.00
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (101 bp):
GAATTGTACTTGTCAATTATCAGCCGAGTTGGAAAAGCGACAAGAAGAGGAAAAAGTTCACCACT
TCCTGATGGGATTGGATGGGACATATAGCACGGTTA
Found at i:17073018 original size:22 final size:22
Alignment explanation
Indices: 17072990--17073066 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
17072980 TTTCTTTTAA
17072990 TTAGGAGATTAGATGCTAAAGT
1 TTAGGAGATTAGATGCTAAAGT
** * *
17073012 TTAGGAGATAATATTTTGGTTTAA--
1 TTAGGAGAT--TA-GAT-GCTAAAGT
17073036 TTAGGAGATTAGATGCTAAAGT
1 TTAGGAGATTAGATGCTAAAGT
17073058 TTAGGAGAT
1 TTAGGAGAT
17073067 AATATTTTGG
Statistics
Matches: 41, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
20 4 0.10
21 1 0.02
22 20 0.49
24 11 0.27
25 1 0.02
26 4 0.10
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (22 bp):
TTAGGAGATTAGATGCTAAAGT
Found at i:17073035 original size:46 final size:46
Alignment explanation
Indices: 17072985--17073079 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
17072975 TCTATTTTCT
17072985 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
1 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
17073031 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
1 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
17073077 TTT
1 TTT
17073080 CTATCTTTGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.34, C:0.02, G:0.23, T:0.41
Consensus pattern (46 bp):
TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
Found at i:17076376 original size:3 final size:3
Alignment explanation
Indices: 17076368--17076416 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
17076358 GAATAGCACG
17076368 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
17076416 T
1 T
17076417 TTGGTATACT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:17076757 original size:2 final size:2
Alignment explanation
Indices: 17076750--17076781 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
17076740 CTTTGCCATG
*
17076750 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17076782 TCATTCTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17079240 original size:53 final size:53
Alignment explanation
Indices: 17079160--17079265 Score: 167
Period size: 53 Copynumber: 2.0 Consensus size: 53
17079150 AAACTAATTC
* * *
17079160 TGTGATGGGCTAAGGCCTTACTGCATATTTGAAACTCATTCTGTGATGGGCTA
1 TGTGATGGGCTAAGACCCTACTGCATATTTGAAACTCATACTGTGATGGGCTA
* *
17079213 TGTGATGGGCTAAGACCCTACTGCATATTTGATACTGATACTGTGATGGGCTA
1 TGTGATGGGCTAAGACCCTACTGCATATTTGAAACTCATACTGTGATGGGCTA
17079266 AGGCCCTACT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (53 bp):
TGTGATGGGCTAAGACCCTACTGCATATTTGAAACTCATACTGTGATGGGCTA
Found at i:17087600 original size:20 final size:20
Alignment explanation
Indices: 17087554--17087601 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
17087544 TATATAAACC
*
17087554 CTTTCAAACTTCATTCTTTT
1 CTTTCAAACTTCATTCTATT
*
17087574 CAATTCAAAC-TCATTTCTATT
1 C-TTTCAAACTTCA-TTCTATT
17087595 CTTTCAA
1 CTTTCAA
17087602 TTCTTAATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.27, C:0.25, G:0.00, T:0.48
Consensus pattern (20 bp):
CTTTCAAACTTCATTCTATT
Found at i:17090834 original size:25 final size:21
Alignment explanation
Indices: 17090779--17090834 Score: 58
Period size: 25 Copynumber: 2.4 Consensus size: 21
17090769 TTTCCCTTTC
17090779 TTTTGTTTCTTTTGTTTTTTT
1 TTTTGTTTCTTTTGTTTTTTT
*
17090800 TTCTTCTTTCTTATGTTGTTATTTTT
1 TT-TTGTTTC-T-T-TTGTT-TTTTT
17090826 TTTTGTTTC
1 TTTTGTTTC
17090835 CAATAAATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
21 2 0.07
22 6 0.21
23 1 0.04
24 1 0.04
25 11 0.39
26 7 0.25
ACGTcount: A:0.04, C:0.09, G:0.09, T:0.79
Consensus pattern (21 bp):
TTTTGTTTCTTTTGTTTTTTT
Found at i:17091694 original size:67 final size:66
Alignment explanation
Indices: 17091616--17091778 Score: 179
Period size: 67 Copynumber: 2.4 Consensus size: 66
17091606 ACTTCACATG
*
17091616 TGTAACCCCATGTTTTACGTCCTGGTGGACTACCCA-TGAG-GTCATAGTCGAGCTATGGTCATA
1 TGTAACCCCATGTTTAACGTCCTGGTGGACT--CCATTG-GTGTCATAGTCGAGCTATGGTCATA
17091679 CACA
63 CACA
* * * * **
17091683 TGTAACCCCATGTTTAATGTCTTGGTGGACTCCATTGGTTGTCATATTTGAGCTATGGTTTTACA
1 TGTAACCCCATGTTTAACGTCCTGGTGGACTCCATTGG-TGTCATAGTCGAGCTATGGTCATACA
17091748 CA
65 CA
* *
17091750 T-TAATTCCCATGTTTAACGTCCTGATGGA
1 TGTAA-CCCCATGTTTAACGTCCTGGTGGA
17091779 TTGTACCGGT
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
65 4 0.05
66 5 0.06
67 72 0.89
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (66 bp):
TGTAACCCCATGTTTAACGTCCTGGTGGACTCCATTGGTGTCATAGTCGAGCTATGGTCATACAC
A
Found at i:17099282 original size:21 final size:21
Alignment explanation
Indices: 17099258--17099297 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
17099248 ACGATGTTGG
* *
17099258 AATAAATTTATAAATAAAATT
1 AATAAACTAATAAATAAAATT
*
17099279 AATATACTAATAAATAAAA
1 AATAAACTAATAAATAAAA
17099298 CTCTACAGTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (21 bp):
AATAAACTAATAAATAAAATT
Found at i:17108677 original size:16 final size:17
Alignment explanation
Indices: 17108656--17108691 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
17108646 TAAAAAGTAC
*
17108656 AAAAATAAAATA-CAAA
1 AAAAATAAAAAATCAAA
17108672 AAAAATAAAAAATCAAA
1 AAAAATAAAAAATCAAA
17108689 AAA
1 AAA
17108692 TATTTTATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAAATAAAAAATCAAA
Found at i:17112986 original size:39 final size:39
Alignment explanation
Indices: 17112943--17113019 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
17112933 GGGTTTACAC
*
17112943 TTTATAGTTTATATATATGT-TATGAATCAGGGTTTAAGA
1 TTTATAGTTTACATATAT-TCTATGAATCAGGGTTTAAGA
* * *
17112982 TTTATAGTTTACATATGTTCTATGATTTAGGGTTTAAG
1 TTTATAGTTTACATATATTCTATGAATCAGGGTTTAAG
17113020 GGATATGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.03
39 32 0.97
ACGTcount: A:0.30, C:0.04, G:0.18, T:0.48
Consensus pattern (39 bp):
TTTATAGTTTACATATATTCTATGAATCAGGGTTTAAGA
Found at i:17113076 original size:20 final size:20
Alignment explanation
Indices: 17113051--17113097 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
17113041 AGATTATGGT
*
17113051 TTAAGGGTTGGGGTTAAGGG
1 TTAAGGGTAGGGGTTAAGGG
*
17113071 TTAAGGGTAGGGGTTAGGGG
1 TTAAGGGTAGGGGTTAAGGG
*
17113091 TTTAGGG
1 TTAAGGG
17113098 GTTTATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.19, C:0.00, G:0.51, T:0.30
Consensus pattern (20 bp):
TTAAGGGTAGGGGTTAAGGG
Found at i:17113320 original size:7 final size:7
Alignment explanation
Indices: 17113278--17113343 Score: 59
Period size: 7 Copynumber: 10.0 Consensus size: 7
17113268 GAGTTGGTGT
*
17113278 TTAAGGT
1 TTAAGGG
17113285 TTAAGGG
1 TTAAGGG
*
17113292 TTAAAGG
1 TTAAGGG
*
17113299 TTAAGGT
1 TTAAGGG
17113306 TTAA---
1 TTAAGGG
17113310 TTAAGGG
1 TTAAGGG
17113317 TTAAGGG
1 TTAAGGG
*
17113324 TT-GGGG
1 TTAAGGG
17113330 TTAAGGG
1 TTAAGGG
*
17113337 TTTAGGG
1 TTAAGGG
17113344 GTTTATAGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
4 4 0.08
6 5 0.10
7 39 0.81
ACGTcount: A:0.27, C:0.00, G:0.38, T:0.35
Consensus pattern (7 bp):
TTAAGGG
Found at i:17113332 original size:13 final size:13
Alignment explanation
Indices: 17113314--17113338 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17113304 GTTTAATTAA
17113314 GGGTTAAGGGTTG
1 GGGTTAAGGGTTG
17113327 GGGTTAAGGGTT
1 GGGTTAAGGGTT
17113339 TAGGGGTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (13 bp):
GGGTTAAGGGTTG
Found at i:17114591 original size:7 final size:7
Alignment explanation
Indices: 17114579--17114606 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
17114569 AAACATCTTA
17114579 TTTTATG
1 TTTTATG
17114586 TTTTATG
1 TTTTATG
17114593 TTTTATG
1 TTTTATG
17114600 TTTTATG
1 TTTTATG
17114607 CTGTCCAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (7 bp):
TTTTATG
Found at i:17118469 original size:33 final size:33
Alignment explanation
Indices: 17118427--17118502 Score: 125
Period size: 33 Copynumber: 2.3 Consensus size: 33
17118417 TGCAGTGAAG
* *
17118427 GAAGCAGAGGCTGCAGCGAGAGAAGTAGCGAGA
1 GAAGCAGAGGCTGCAGCGAAAGAAGCAGCGAGA
*
17118460 GAAGCAGAGGCTGCAGCTAAAGAAGCAGCGAGA
1 GAAGCAGAGGCTGCAGCGAAAGAAGCAGCGAGA
17118493 GAAGCAGAGG
1 GAAGCAGAGG
17118503 TTCAAAAGGA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.38, C:0.16, G:0.41, T:0.05
Consensus pattern (33 bp):
GAAGCAGAGGCTGCAGCGAAAGAAGCAGCGAGA
Found at i:17118495 original size:12 final size:12
Alignment explanation
Indices: 17118439--17118499 Score: 56
Period size: 12 Copynumber: 5.3 Consensus size: 12
17118429 AGCAGAGGCT
17118439 GCAGCGAGAGAA
1 GCAGCGAGAGAA
*
17118451 GTAGCGAGAGAA
1 GCAGCGAGAGAA
**
17118463 GCA--GAG-GCT
1 GCAGCGAGAGAA
* *
17118472 GCAGCTAAAGAA
1 GCAGCGAGAGAA
17118484 GCAGCGAGAGAA
1 GCAGCGAGAGAA
17118496 GCAG
1 GCAG
17118500 AGGTTCAAAA
Statistics
Matches: 36, Mismatches: 10, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
9 4 0.11
10 3 0.08
11 1 0.03
12 28 0.78
ACGTcount: A:0.39, C:0.16, G:0.39, T:0.05
Consensus pattern (12 bp):
GCAGCGAGAGAA
Found at i:17120406 original size:44 final size:43
Alignment explanation
Indices: 17120308--17120428 Score: 115
Period size: 44 Copynumber: 2.8 Consensus size: 43
17120298 GATCATGATC
* * *
17120308 TTCTACCA-AAA-GCACTGCTAAAGATCACGGCCTTTAGCGGCGC
1 TTCTACCACAAACGC-C-GCTAAAGATCATGACCTTTAGCGGCGA
* *
17120351 TTTTACCACAAAATGCCGCTAAAGATCATGACCTTTAGCGGCGA
1 TTCTACCAC-AAACGCCGCTAAAGATCATGACCTTTAGCGGCGA
** *
17120395 TTCTATTACAAACGCCGCT-AA-ATCATGACTTTTA
1 TTCTACCACAAACGCCGCTAAAGATCATGACCTTTA
17120429 AAAAAAATTA
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
41 12 0.18
42 2 0.03
43 16 0.24
44 30 0.45
45 4 0.06
46 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
TTCTACCACAAACGCCGCTAAAGATCATGACCTTTAGCGGCGA
Found at i:17122856 original size:5 final size:5
Alignment explanation
Indices: 17122846--17122871 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
17122836 ACTTGGTTTG
17122846 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
17122872 CAAATTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:17124583 original size:7 final size:7
Alignment explanation
Indices: 17124571--17124720 Score: 52
Period size: 7 Copynumber: 20.4 Consensus size: 7
17124561 CTAACCATTG
17124571 AAACCCT
1 AAACCCT
17124578 AAACCCCT
1 AAA-CCCT
17124586 AAATCCCCT
1 AAA--CCCT
*
17124595 AACCCCT
1 AAACCCT
* *
17124602 AAAGCAT
1 AAACCCT
*
17124609 AACCCCT
1 AAACCCT
*
17124616 AACCCCT
1 AAACCCT
17124623 AAATCCCCT
1 AAA--CCCT
*
17124632 -ACCCCT
1 AAACCCT
* * *
17124638 GAAGCAT
1 AAACCCT
*
17124645 AACCCCT
1 AAACCCT
*
17124652 AACCCCT
1 AAACCCT
17124659 AAATCCCCTT
1 AAA--CCC-T
*
17124669 AACCCCT
1 AAACCCT
* *
17124676 AAAGCAT
1 AAACCCT
17124683 -AACACCT
1 AAAC-CCT
*
17124690 AACCCCT
1 AAACCCT
*
17124697 AAACCTT
1 AAACCCT
*
17124704 AAATCCT
1 AAACCCT
17124711 AAACCCT
1 AAACCCT
17124718 AAA
1 AAA
17124721 TCCATACCCC
Statistics
Matches: 104, Mismatches: 29, Indels: 20
0.68 0.19 0.13
Matches are distributed among these distances:
6 6 0.06
7 68 0.65
8 13 0.12
9 14 0.13
10 3 0.03
ACGTcount: A:0.37, C:0.43, G:0.03, T:0.17
Consensus pattern (7 bp):
AAACCCT
Found at i:17124643 original size:36 final size:37
Alignment explanation
Indices: 17124574--17124699 Score: 209
Period size: 36 Copynumber: 3.4 Consensus size: 37
17124564 ACCATTGAAA
17124574 CCCTAAACCCCTAAATCCCCTAACCCCTAAAGCATAAC
1 CCCT-AACCCCTAAATCCCCTAACCCCTAAAGCATAAC
*
17124612 CCCTAACCCCTAAATCCCCT-ACCCCTGAAGCATAAC
1 CCCTAACCCCTAAATCCCCTAACCCCTAAAGCATAAC
17124648 CCCTAACCCCTAAATCCCCTTAACCCCTAAAGCATAAC
1 CCCTAACCCCTAAATCCCC-TAACCCCTAAAGCATAAC
*
17124686 ACCTAACCCCTAAA
1 CCCTAACCCCTAAA
17124700 CCTTAAATCC
Statistics
Matches: 83, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
36 34 0.41
37 17 0.20
38 32 0.39
ACGTcount: A:0.35, C:0.45, G:0.03, T:0.17
Consensus pattern (37 bp):
CCCTAACCCCTAAATCCCCTAACCCCTAAAGCATAAC
Found at i:17124711 original size:21 final size:21
Alignment explanation
Indices: 17124644--17124726 Score: 69
Period size: 21 Copynumber: 3.8 Consensus size: 21
17124634 CCCTGAAGCA
* *
17124644 TAACCCCTAACCCCTAAATCCCC
1 TAACCCCTAAACCATAAAT--CC
*
17124667 TTAACCCCTAAAGCATAACA-CC
1 -TAACCCCTAAACCATAA-ATCC
*
17124689 TAACCCCTAAACCTTAAATCC
1 TAACCCCTAAACCATAAATCC
*
17124710 TAAACCCTAAATCCATA
1 TAACCCCTAAA-CCATA
17124727 CCCCGGCCTA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
20 1 0.02
21 27 0.55
22 6 0.12
24 14 0.29
25 1 0.02
ACGTcount: A:0.39, C:0.40, G:0.01, T:0.20
Consensus pattern (21 bp):
TAACCCCTAAACCATAAATCC
Found at i:17125148 original size:114 final size:113
Alignment explanation
Indices: 17124935--17125284 Score: 484
Period size: 114 Copynumber: 3.1 Consensus size: 113
17124925 CAAATTATTT
* ** * *
17124935 TAAATCCCTGAGCATTAGCGGCACTTCCTTAAAAACGCCATTAAATCCCCAAAAGCTCAGAAAAC
1 TAAATCCCTGAGCATTAGCGGCGCTTCCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAT
* *
17125000 GGCGTCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCAAAAAACGCCGC
66 GGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCC-AAAAACGCTGC
* * * *
17125049 TAAAGCCCAGAGCATTAGCGGCGCTTCCTTAAAAACACCGCTAAATCCCCGAAAGCTTAGAAAAT
1 TAAATCCCTGAGCATTAGCGGCGCTTCCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAT
* * * *
17125114 GGCATCGTTAGGCTTAGGTTTTTTTGCGGTGCTTTCTCAAAAACGCTAC
66 GGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTC-CAAAAACGCTGC
* *
17125163 TAAATCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAACTCCCCGAAAGCTCAGAAAAT
1 TAAATCCCTGAGCATTAGCGGCGCTTCCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAT
* * * *
17125228 GGTGCCGTTGGGCTTAGGTTTTTTTGCAGCGCTTTTTCAAAAACGCTGC
66 GGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGC-TTTCCAAAAACGCTGC
17125277 TAAATCCC
1 TAAATCCC
17125285 CGAAAGTTCA
Statistics
Matches: 205, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
114 201 0.98
115 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (113 bp):
TAAATCCCTGAGCATTAGCGGCGCTTCCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAT
GGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCAAAAACGCTGC
Found at i:17125310 original size:73 final size:72
Alignment explanation
Indices: 17125183--17125357 Score: 228
Period size: 73 Copynumber: 2.4 Consensus size: 72
17125173 AGCATTAGCG
* ** *
17125183 GCGCTTTCTT-AAAAACGCCGCTAACTCCCCGAAAGCTCAGAAAATGGTGCCGTTGGGCTTAGGT
1 GCGCTTT-TTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACAGCGCCGTTGGGCTTAGGT
17125247 TTTTTTGC
65 TTTTTTGC
* * *
17125255 AGCGCTTTTTCAAAAACGCTGCTAAATCCCCGAAAGTTCAGAAAACAGCGTCGTTGGGCTTAGGT
1 -GCGCTTTTTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACAGCGCCGTTGGGCTTAGGT
17125320 TTTTTTGC
65 TTTTTTGC
*
17125328 GTTG-TTTTCTCAAAAACGCCGCTAAATCCC
1 G-CGCTTTT-TCAAAAACGCCGCTAAATCCC
17125358 TGATCATTAG
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
72 7 0.08
73 83 0.92
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (72 bp):
GCGCTTTTTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACAGCGCCGTTGGGCTTAGGTT
TTTTTGC
Found at i:17139433 original size:24 final size:24
Alignment explanation
Indices: 17139406--17139480 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
17139396 ACCTCACAAG
*
17139406 GAATTCTGAGCTCGGTAAAGATTA
1 GAATTCTGAGCTAGGTAAAGATTA
***
17139430 GAA-T-TGA-CTTAGG-AATTCTTA
1 GAATTCTGAGC-TAGGTAAAGATTA
*
17139451 GGAATTCTGAGCTTGGTAAAGATTA
1 -GAATTCTGAGCTAGGTAAAGATTA
17139476 GAATT
1 GAATT
17139481 GACTTGTCCT
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
21 6 0.16
22 9 0.24
23 2 0.05
24 14 0.38
25 6 0.16
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.33
Consensus pattern (24 bp):
GAATTCTGAGCTAGGTAAAGATTA
Found at i:17139973 original size:29 final size:26
Alignment explanation
Indices: 17139908--17139973 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 26
17139898 ATCCAAAAAT
17139908 AAAAGGAAAAAAGAAAAAATCAAAGTC
1 AAAA-GAAAAAAGAAAAAATCAAAGTC
*
17139935 AAAAGCAAAAAGAAAAATCAATCAAAGTC
1 AAAAGAAAAAAG-AAAA--AATCAAAGTC
*
17139964 AAAATAAAAA
1 AAAAGAAAAA
17139974 TATGAAAAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 7 0.21
27 8 0.24
29 18 0.55
ACGTcount: A:0.71, C:0.09, G:0.11, T:0.09
Consensus pattern (26 bp):
AAAAGAAAAAAGAAAAAATCAAAGTC
Found at i:17140392 original size:7 final size:7
Alignment explanation
Indices: 17140343--17140375 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
17140333 AATGAAGTTA
17140343 AAAAAAT
1 AAAAAAT
17140350 AAAAAAT
1 AAAAAAT
17140357 AAAAAAT
1 AAAAAAT
17140364 AAAAAAT
1 AAAAAAT
17140371 AAAAA
1 AAAAA
17140376 GAGATGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:17140408 original size:21 final size:21
Alignment explanation
Indices: 17140382--17140421 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
17140372 AAAAGAGATG
17140382 AAAAATGAAAA-TGAAAATGAA
1 AAAAATGAAAAGT-AAAATGAA
17140403 AAAAATGAAAAGTAAAATG
1 AAAAATGAAAAGTAAAATG
17140422 GAGAGGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (21 bp):
AAAAATGAAAAGTAAAATGAA
Found at i:17141795 original size:87 final size:87
Alignment explanation
Indices: 17141644--17142233 Score: 865
Period size: 87 Copynumber: 6.8 Consensus size: 87
17141634 AGTGAAAATT
* *
17141644 GAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTGAAGATAACAGATCTTGCCTTCC
1 GAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCC
* *
17141709 TGCATTAACAGTGAAGCTGATC
66 TGCATTAACAGCGAAGCAGATC
* * *
17141731 GAAAACAAAGCCTTGCCTCCATCGGTTGTAGTAGAGCGGGTTAAAGATAGCAGATCTTGTCTTCC
1 GAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCC
*
17141796 TGCATTAATAGCGAAGCAGATC
66 TGCATTAACAGCGAAGCAGATC
* *
17141818 GAAAAACAAAGCATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTC
1 G-AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTC
* * *
17141883 ATTCGTTAACAGCGAAGCAGATC
65 CTGCATTAACAGCGAAGCAGATC
** * * * *
17141906 GAAAATGAAGCCTTGCCTTCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTACATCCC
1 GAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCC
17141971 TGCATTAACAGCGAAGCAGATC
66 TGCATTAACAGCGAAGCAGATC
** *
17141993 GAAAACAAAGCCTTGCCTCCATCGGTTACAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTCC
1 GAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCC
*
17142058 TGCGTTAACAGCGAAGCAGATC
66 TGCATTAACAGCGAAGCAGATC
* * *
17142080 GAAAAACAAAGTCTTGCCTCCATCGGTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTC
1 G-AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTC
* *
17142145 CTTCGTTAACAGCGAAGCAGATC
65 CTGCATTAACAGCGAAGCAGATC
* * * * *
17142168 GAAAACGAAGCCTTACCTTCATCGGTTGTAGTGGAGTTGGTTAAAGATAGCAGATCTTGCATTCC
1 GAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCC
17142233 T
66 T
17142234 AAGCACTAGC
Statistics
Matches: 452, Mismatches: 49, Indels: 4
0.90 0.10 0.01
Matches are distributed among these distances:
87 290 0.64
88 162 0.36
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (87 bp):
GAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCC
TGCATTAACAGCGAAGCAGATC
Found at i:17141936 original size:175 final size:174
Alignment explanation
Indices: 17141644--17142233 Score: 867
Period size: 175 Copynumber: 3.4 Consensus size: 174
17141634 AGTGAAAATT
* * *
17141644 GAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTGAAGATAACAGATCTTGCCTTCC
1 GAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCC
* * * * *
17141709 TGCATTAACAGTGAAGCTGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTAGAGCGGGTTA
66 TGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTA
* *
17141774 AAGATAGCAGATCTTGTCTTCCTGCATTAATAGCGAAGCAGATC
131 AAGATAGCAGATCTTGACTTCCTGCATTAACAGCGAAGCAGATC
*
17141818 GAAAAACAAAGCATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTC
1 G-AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTC
* * ** *
17141883 ATTCGTTAACAGCGAAGCAGATCGAAAATGAAGCCTTGCCTTCATCGGTTGTAGTGGAGCTGGTT
65 CTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTT
*
17141948 AAAGATAGCAGATCTT-ACATCCCTGCATTAACAGCGAAGCAGATC
130 AAAGATAGCAGATCTTGAC-TTCCTGCATTAACAGCGAAGCAGATC
* *
17141993 GAAAACAAAGCCTTGCCTCCATCGGTTACAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTCC
1 GAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCC
* * *
17142058 TGCGTTAACAGCGAAGCAGATCGAAAAACAAAGTCTTGCCTCCATCGGTTGCAGTGGAGCTAGTT
66 TGCGTTAACAGCGAAGCAGATCG-AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTT
* * *
17142123 AAAGATAGCAGATCTTGCCTTCCTTCGTTAACAGCGAAGCAGATC
130 AAAGATAGCAGATCTTGACTTCCTGCATTAACAGCGAAGCAGATC
* * * * * *
17142168 GAAAACGAAGCCTTACCTTCATCGGTTGTAGTGGAGTTGGTTAAAGATAGCAGATCTTGCATTCC
1 GAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCC
17142233 T
66 T
17142234 AAGCACTAGC
Statistics
Matches: 372, Mismatches: 40, Indels: 7
0.89 0.10 0.02
Matches are distributed among these distances:
174 84 0.23
175 287 0.77
176 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (174 bp):
GAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCC
TGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTA
AAGATAGCAGATCTTGACTTCCTGCATTAACAGCGAAGCAGATC
Found at i:17142116 original size:262 final size:262
Alignment explanation
Indices: 17141644--17142225 Score: 950
Period size: 262 Copynumber: 2.2 Consensus size: 262
17141634 AGTGAAAATT
* * * * * * *
17141644 GAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTGAAGATAACAGATCTTGCCTTCC
1 GAAAACGAAGCCTTGCCTTCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTACATCCC
* * ** *
17141709 TGCATTAACAGTGAAGCTGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTAGAGCGGGTTA
66 TGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTACAGTAGAGCGAGTTA
* *
17141774 AAGATAGCAGATCTTGTCTTCCTGCATTAATAGCGAAGCAGATCGAAAAACAAAGCATTGCCTCC
131 AAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAAACAAAGCATTGCCTCC
*
17141839 ATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCATTCGTTAACAGCGAAGCAGA
196 ATCGGTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTCATTCGTTAACAGCGAAGCAGA
17141904 TC
261 TC
*
17141906 GAAAATGAAGCCTTGCCTTCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTACATCCC
1 GAAAACGAAGCCTTGCCTTCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTACATCCC
* *
17141971 TGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTACAGTGGAGCTAGTTA
66 TGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTACAGTAGAGCGAGTTA
*
17142036 AAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAAACAAAGTC-TTGCCTC
131 AAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAAACAAAG-CATTGCCTC
*
17142100 CATCGGTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTCCTTCGTTAACAGCGAAGCAG
195 CATCGGTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTCATTCGTTAACAGCGAAGCAG
17142165 ATC
260 ATC
* *
17142168 GAAAACGAAGCCTTACCTTCATCGGTTGTAGTGGAGTTGGTTAAAGATAGCAGATCTT
1 GAAAACGAAGCCTTGCCTTCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTT
17142226 GCATTCCTAA
Statistics
Matches: 296, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
262 295 1.00
263 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (262 bp):
GAAAACGAAGCCTTGCCTTCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTACATCCC
TGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTACAGTAGAGCGAGTTA
AAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAAACAAAGCATTGCCTCC
ATCGGTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTCATTCGTTAACAGCGAAGCAGA
TC
Found at i:17143817 original size:21 final size:20
Alignment explanation
Indices: 17143788--17143851 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 20
17143778 TTGCAATATA
17143788 TTTATTTATTTATTTTAAAC
1 TTTATTTATTTATTTTAAAC
17143808 TTTATGTTATTTATTTTAAATC
1 TTTAT-TTATTTATTTTAAA-C
17143830 GTTCTATTACTATTTATTTTAA
1 -TT-TATT--TATTTATTTTAA
17143852 GTTTTTTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
20 5 0.13
21 14 0.37
22 1 0.03
23 3 0.08
24 3 0.08
25 12 0.32
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.62
Consensus pattern (20 bp):
TTTATTTATTTATTTTAAAC
Found at i:17148866 original size:16 final size:16
Alignment explanation
Indices: 17148847--17148877 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17148837 AAAAAAACAC
*
17148847 AAAAGAAAAAGGAAAA
1 AAAAGAAAAAAGAAAA
17148863 AAAAGAAAAAAGAAA
1 AAAAGAAAAAAGAAA
17148878 GGCAGAGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAA
Found at i:17149346 original size:28 final size:29
Alignment explanation
Indices: 17149278--17149353 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 29
17149268 ATAATAGGAA
* *
17149278 AATTACTCAAATAATATAAATAAAATTATT
1 AATTACTGAAATAATATGAATAAAA-TATT
* * *
17149308 ATTTATTGAAATAATATGGATAAAA-ATT
1 AATTACTGAAATAATATGAATAAAATATT
*
17149336 AATTACTGAAATGATATG
1 AATTACTGAAATAATATG
17149354 TTTTTTATAG
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 18 0.47
30 20 0.53
ACGTcount: A:0.51, C:0.04, G:0.08, T:0.37
Consensus pattern (29 bp):
AATTACTGAAATAATATGAATAAAATATT
Found at i:17152803 original size:19 final size:18
Alignment explanation
Indices: 17152779--17152824 Score: 76
Period size: 19 Copynumber: 2.6 Consensus size: 18
17152769 ATTTATCAAG
17152779 ATAAATATTAGATTAAATT
1 ATAAATATTAGATTAAA-T
17152798 ATAAATATTAGATTAAAT
1 ATAAATATTAGATTAAAT
17152816 AT-AATATTA
1 ATAAATATTA
17152825 AATCTTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 7 0.26
18 3 0.11
19 17 0.63
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.41
Consensus pattern (18 bp):
ATAAATATTAGATTAAAT
Found at i:17154896 original size:17 final size:18
Alignment explanation
Indices: 17154855--17154889 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
17154845 TGTTAACAAT
17154855 ATAACACAAGACACAAAA
1 ATAACACAAGACACAAAA
17154873 ATAACAC-AGAACACAAA
1 ATAACACAAG-ACACAAA
17154890 TTAACACGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.66, C:0.23, G:0.06, T:0.06
Consensus pattern (18 bp):
ATAACACAAGACACAAAA
Found at i:17164476 original size:8 final size:8
Alignment explanation
Indices: 17164463--17164490 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
17164453 AAGTAGAAAC
17164463 ATATAGAT
1 ATATAGAT
17164471 ATATAGAT
1 ATATAGAT
17164479 ATATAGAT
1 ATATAGAT
17164487 ATAT
1 ATAT
17164491 GGGATGATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (8 bp):
ATATAGAT
Found at i:17167261 original size:25 final size:25
Alignment explanation
Indices: 17167233--17167289 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
17167223 ACAAACGGGG
*
17167233 AGCTCTTCTGAGCCATGTAACAGGA
1 AGCTCTTCTGAGCCATATAACAGGA
* *
17167258 AGCT-TATGTGAGCCATATAACGGGA
1 AGCTCT-TCTGAGCCATATAACAGGA
17167283 AGCTCTT
1 AGCTCTT
17167290 GCAAGCCAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 1 0.04
25 25 0.93
26 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (25 bp):
AGCTCTTCTGAGCCATATAACAGGA
Found at i:17177988 original size:75 final size:75
Alignment explanation
Indices: 17177865--17178068 Score: 228
Period size: 75 Copynumber: 2.7 Consensus size: 75
17177855 ATATTCGAGT
* * * * *** * *
17177865 CTCATACACACTTATATAAAAGTCATACCTAAATTTAACGGAAGAACATATTCAAATATATTTAT
1 CTCATATAAACTTATATAAAAGTCATACCTAAACTCAAAACAAGAACATATACAAATATATTTAC
**
17177930 ATTTCTGAAC
66 ATTTCCAAAC
* * *
17177940 CTCATATAAACTTATATAAAAGTCATACCTAAACTCAAAACAATAACATATACAATTATATTTGC
1 CTCATATAAACTTATATAAAAGTCATACCTAAACTCAAAACAAGAACATATACAAATATATTTAC
*
17178005 ATTTCCAAAT
66 ATTTCCAAAC
* * * * *
17178015 TTCATATAAACTTACATAAAAATCATACCCAAACTCAATACAAGAACATATACA
1 CTCATATAAACTTATATAAAAGTCATACCTAAACTCAAAACAAGAACATATACA
17178069 TGTAAATATA
Statistics
Matches: 108, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
75 108 1.00
ACGTcount: A:0.47, C:0.19, G:0.04, T:0.30
Consensus pattern (75 bp):
CTCATATAAACTTATATAAAAGTCATACCTAAACTCAAAACAAGAACATATACAAATATATTTAC
ATTTCCAAAC
Found at i:17181213 original size:18 final size:18
Alignment explanation
Indices: 17181173--17181215 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
17181163 GTTAAGTAAA
*
17181173 TATATTATATTATTATAT
1 TATAATATATTATTATAT
*
17181191 AATAATATATTA-TAGTAT
1 TATAATATATTATTA-TAT
17181209 TATAATA
1 TATAATA
17181216 AAACAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
TATAATATATTATTATAT
Found at i:17181606 original size:18 final size:19
Alignment explanation
Indices: 17181577--17181612 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
17181567 GTGAAAAATT
*
17181577 TGAAATTTAGGGATTTAAG
1 TGAAATTTAGGGAGTTAAG
17181596 TGAAA-TTAGGGAGTTAA
1 TGAAATTTAGGGAGTTAA
17181613 ATCTAGTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.33
Consensus pattern (19 bp):
TGAAATTTAGGGAGTTAAG
Found at i:17182498 original size:18 final size:18
Alignment explanation
Indices: 17182475--17182513 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
17182465 TACTCATGAT
17182475 TTGAATGTGGAATGGATA
1 TTGAATGTGGAATGGATA
17182493 TTGAATGTGGAATGGATA
1 TTGAATGTGGAATGGATA
17182511 TTG
1 TTG
17182514 TAAATGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.33, T:0.36
Consensus pattern (18 bp):
TTGAATGTGGAATGGATA
Found at i:17197046 original size:21 final size:21
Alignment explanation
Indices: 17196986--17197046 Score: 52
Period size: 21 Copynumber: 2.8 Consensus size: 21
17196976 TTCGGGGCTA
*
17196986 ATTTAAAATTGATTTAAAGATCC
1 ATTTAAAA-T-ATTTAAAAATCC
* **
17197009 ATTAAAAATATGGAAAAATACC
1 ATTTAAAATATTTAAAAAT-CC
17197031 -TTTAAAATATTTAAAA
1 ATTTAAAATATTTAAAA
17197047 TTTCCCTAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
21 20 0.67
22 3 0.10
23 7 0.23
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (21 bp):
ATTTAAAATATTTAAAAATCC
Found at i:17201469 original size:31 final size:31
Alignment explanation
Indices: 17201431--17201493 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
17201421 GTGCAAAAAG
17201431 ACTTACTAAGGAAGGAAATAAAGAAA-TTGAC
1 ACTTACTAAGGAAGGAAATAAA-AAATTTGAC
*
17201462 ACTTACTAAGGAAGGGAATAAAAAATTTGAC
1 ACTTACTAAGGAAGGAAATAAAAAATTTGAC
17201493 A
1 A
17201494 TACTTTGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 3 0.10
31 27 0.90
ACGTcount: A:0.51, C:0.10, G:0.19, T:0.21
Consensus pattern (31 bp):
ACTTACTAAGGAAGGAAATAAAAAATTTGAC
Found at i:17205537 original size:5 final size:5
Alignment explanation
Indices: 17205527--17205557 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
17205517 CACCCAGACA
17205527 CCAAT CCAAT CCAAT CCAAT CCAAT CCAAT C
1 CCAAT CCAAT CCAAT CCAAT CCAAT CCAAT C
17205558 TCATCCCCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.42, G:0.00, T:0.19
Consensus pattern (5 bp):
CCAAT
Found at i:17209262 original size:6 final size:7
Alignment explanation
Indices: 17209246--17209271 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
17209236 AAATAGCTTG
17209246 TTTTTCT
1 TTTTTCT
17209253 TTTTTCT
1 TTTTTCT
17209260 TTTTTCT
1 TTTTTCT
17209267 TTTTT
1 TTTTT
17209272 AGATTTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTCT
Found at i:17209886 original size:40 final size:40
Alignment explanation
Indices: 17209825--17209921 Score: 101
Period size: 40 Copynumber: 2.5 Consensus size: 40
17209815 ACACCAAAAA
* * * * *
17209825 AATCGAGCATTAGCAGTGCTTTATA-TAAAACGCCACTAA-
1 AATCGAGTATTAGCGGCGCTTTA-AGGAAAACACCACTAAT
*
17209864 AGATCGAGTATTAGCGGCGCTTTAAGGAAAACACCGCTAAT
1 A-ATCGAGTATTAGCGGCGCTTTAAGGAAAACACCACTAAT
17209905 AAT-GAGTATTAGCGGCG
1 AATCGAGTATTAGCGGCG
17209922 TTTTTCGCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
39 16 0.33
40 32 0.65
41 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.24
Consensus pattern (40 bp):
AATCGAGTATTAGCGGCGCTTTAAGGAAAACACCACTAAT
Found at i:17210070 original size:40 final size:41
Alignment explanation
Indices: 17209974--17210081 Score: 164
Period size: 41 Copynumber: 2.7 Consensus size: 41
17209964 CTTTCAAGGA
* *
17209974 TTTAGCGGCATTTTTGTAGAAGCGGCGCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGTAGAAGCGCCGCTAATGCTCAGGGC
* *
17210015 TTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGCTCA-GGT
1 TTTAGCGGCGTTTTTGTAGAAGCGCCGCTAATGCTCAGGGC
*
17210055 TTTAGCGGCGTTTTTGTAAAAGCGCCG
1 TTTAGCGGCGTTTTTGTAGAAGCGCCG
17210082 AAAAAACATT
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 27 0.44
41 34 0.56
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGTAGAAGCGCCGCTAATGCTCAGGGC
Found at i:17210422 original size:14 final size:14
Alignment explanation
Indices: 17210393--17210502 Score: 85
Period size: 14 Copynumber: 7.7 Consensus size: 14
17210383 TATCTCTATA
* *
17210393 GTTTAAGGTTTTTG
1 GTTTAGGGTTTATG
*
17210407 GTTTAGGGTATATG
1 GTTTAGGGTTTATG
* * *
17210421 GTATAGAGTTTAAG
1 GTTTAGGGTTTATG
* *
17210435 GTTTATGGATTATGG
1 GTTTAGGGTTTAT-G
*
17210450 GTTTAGGGGTTATG
1 GTTTAGGGTTTATG
**
17210464 GTTTACAGTTTATG
1 GTTTAGGGTTTATG
* *
17210478 GTTTAAGGTTTAGG
1 GTTTAGGGTTTATG
17210492 GTTTAAGGGTT
1 GTTT-AGGGTT
17210503 ACAGTTTAAG
Statistics
Matches: 73, Mismatches: 21, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
14 56 0.77
15 17 0.23
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.45
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:17210454 original size:43 final size:41
Alignment explanation
Indices: 17210406--17210503 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 41
17210396 TAAGGTTTTT
* *
17210406 GGTTTAGGGTATATGGTATAGAGTTTAAGGTTTATGGATTATG
1 GGTTTAGGGT-TATGGTATACAGTTTAAGGTTTAAGGATTA-G
* * *
17210449 GGTTTAGGGGTTATGGTTTACAGTTTATGGTTTAAGGTTTAG
1 GGTTTA-GGGTTATGGTATACAGTTTAAGGTTTAAGGATTAG
17210491 GGTTTAAGGGTTA
1 GGTTT-AGGGTTA
17210504 CAGTTTAAGG
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
42 12 0.25
43 32 0.67
44 4 0.08
ACGTcount: A:0.22, C:0.01, G:0.34, T:0.43
Consensus pattern (41 bp):
GGTTTAGGGTTATGGTATACAGTTTAAGGTTTAAGGATTAG
Found at i:17210536 original size:21 final size:22
Alignment explanation
Indices: 17210489--17210536 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 22
17210479 TTTAAGGTTT
*
17210489 AGGGTTTAAGGGTTACAGTTTA
1 AGGGTTTAAGGGTTACAGATTA
*
17210511 A-GGTTTAA-GGTTATAGATTA
1 AGGGTTTAAGGGTTACAGATTA
17210531 AGGGTT
1 AGGGTT
17210537 GGGGTTTAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 11 0.48
21 11 0.48
22 1 0.04
ACGTcount: A:0.29, C:0.02, G:0.31, T:0.38
Consensus pattern (22 bp):
AGGGTTTAAGGGTTACAGATTA
Found at i:17210551 original size:7 final size:7
Alignment explanation
Indices: 17210428--17210522 Score: 68
Period size: 7 Copynumber: 13.4 Consensus size: 7
17210418 ATGGTATAGA
17210428 GTTTAAG
1 GTTTAAG
*
17210435 GTTTATG
1 GTTTAAG
* *
17210442 GATTATGG
1 GTTTA-AG
*
17210450 GTTTAGG
1 GTTTAAG
* *
17210457 GGTTATG
1 GTTTAAG
17210464 GTTTACA-
1 GTTTA-AG
*
17210471 GTTTATG
1 GTTTAAG
17210478 GTTTAAG
1 GTTTAAG
*
17210485 GTTTAGG
1 GTTTAAG
17210492 GTTTAAG
1 GTTTAAG
*
17210499 GGTTACA-
1 GTTTA-AG
17210506 GTTTAAG
1 GTTTAAG
17210513 GTTTAAG
1 GTTTAAG
17210520 GTT
1 GTT
17210523 ATAGATTAAG
Statistics
Matches: 69, Mismatches: 14, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
6 1 0.01
7 62 0.90
8 6 0.09
ACGTcount: A:0.22, C:0.02, G:0.32, T:0.44
Consensus pattern (7 bp):
GTTTAAG
Found at i:17210570 original size:7 final size:7
Alignment explanation
Indices: 17210480--17210599 Score: 52
Period size: 7 Copynumber: 17.3 Consensus size: 7
17210470 AGTTTATGGT
17210480 TTAA-GG
1 TTAAGGG
*
17210486 TTTAGGG
1 TTAAGGG
17210493 TTTAAGGG
1 -TTAAGGG
*
17210501 TTACA-GT
1 TTA-AGGG
*
17210508 TTAAGGT
1 TTAAGGG
17210515 TTAA-GG
1 TTAAGGG
*
17210521 TTATA-GA
1 TTA-AGGG
17210528 TTAAGGG
1 TTAAGGG
*
17210535 TT-GGGG
1 TTAAGGG
*
17210541 TTTAAGGT
1 -TTAAGGG
*
17210549 TTAGGGG
1 TTAAGGG
*
17210556 TTAGGGG
1 TTAAGGG
*
17210563 TTGAGGG
1 TTAAGGG
*
17210570 TTAAGAG
1 TTAAGGG
17210577 TTAAGGG
1 TTAAGGG
* *
17210584 TTTAGGA
1 TTAAGGG
*
17210591 TTCAGGG
1 TTAAGGG
17210598 TT
1 TT
17210600 TAGATTAATT
Statistics
Matches: 86, Mismatches: 20, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
6 12 0.14
7 65 0.76
8 9 0.10
ACGTcount: A:0.24, C:0.02, G:0.38, T:0.37
Consensus pattern (7 bp):
TTAAGGG
Found at i:17210728 original size:16 final size:17
Alignment explanation
Indices: 17210709--17210750 Score: 68
Period size: 16 Copynumber: 2.5 Consensus size: 17
17210699 AAATTATTTA
17210709 TAAATAATTT-ATATAT
1 TAAATAATTTAATATAT
17210725 TAAATAATTTAATATAT
1 TAAATAATTTAATATAT
17210742 TAAAATAAT
1 T-AAATAAT
17210751 GATTATAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 10 0.42
17 7 0.29
18 7 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TAAATAATTTAATATAT
Found at i:17216430 original size:23 final size:24
Alignment explanation
Indices: 17216386--17216442 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 24
17216376 ACTAAAAGTA
*
17216386 TATATTTAATACTAATTAATTTTT
1 TATATTTAATAATAATTAATTTTT
* *
17216410 TATA-TTAATAATATTTGA-TTTT
1 TATATTTAATAATAATTAATTTTT
*
17216432 AATATTTAATA
1 TATATTTAATA
17216443 TTTTTAAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 7 0.25
23 17 0.61
24 4 0.14
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (24 bp):
TATATTTAATAATAATTAATTTTT
Found at i:17216503 original size:26 final size:26
Alignment explanation
Indices: 17216473--17216524 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17216463 GTTAGTGGCG
* *
17216473 TTTTTCCATAAATGTCGCCAAAGAAT
1 TTTTTCCATAAATGCCGCAAAAGAAT
17216499 TTTTTCCATAAATGCCGCAAAAGAAT
1 TTTTTCCATAAATGCCGCAAAAGAAT
17216525 GGTATTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.33
Consensus pattern (26 bp):
TTTTTCCATAAATGCCGCAAAAGAAT
Found at i:17216598 original size:43 final size:43
Alignment explanation
Indices: 17216551--17216750 Score: 276
Period size: 43 Copynumber: 4.7 Consensus size: 43
17216541 TTTGTAATTG
* * *
17216551 AAGCGTCGCTAAAGGTCTTGAGCTATAGTGGCGTTTGTGGAAA
1 AAGCGTCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGAAA
* * * *
17216594 AAGCGTCGCTAAAGGTCTTGATCTATAACGGTGTTTGTGAAAA
1 AAGCGTCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGAAA
* * *
17216637 AAACGTCGCTAAAGATCCTGATCTATAGCGGCGTTTGTGTAAA
1 AAGCGTCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGAAA
* *
17216680 AAGCGTCGCTAAAGGTCATGATCTATAGCGGCGTTTGT-GTAA
1 AAGCGTCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGAAA
*
17216722 AAGCGCCGCTAAAGGTCCTGATCTATAGC
1 AAGCGTCGCTAAAGGTCCTGATCTATAGC
17216751 AACGTTGACA
Statistics
Matches: 139, Mismatches: 18, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 29 0.21
43 110 0.79
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (43 bp):
AAGCGTCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGAAA
Found at i:17218071 original size:38 final size:38
Alignment explanation
Indices: 17218012--17218090 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 38
17218002 GCTTGTTCAA
* * *
17218012 CATGCCTATTGTTATTGTTGAA-CTAAATACATGTTAAG
1 CATGCCTACTATTATTGTTGAACCT-AATACAGGTTAAG
17218050 CATGCCTACTATTAATT-TTGAACCTAATACAGGTTAAG
1 CATGCCTACTATT-ATTGTTGAACCTAATACAGGTTAAG
17218088 CAT
1 CAT
17218091 ATCTAATGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
38 31 0.86
39 5 0.14
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (38 bp):
CATGCCTACTATTATTGTTGAACCTAATACAGGTTAAG
Found at i:17222940 original size:36 final size:34
Alignment explanation
Indices: 17222875--17222941 Score: 80
Period size: 36 Copynumber: 1.9 Consensus size: 34
17222865 TGATAACTTA
* * *
17222875 ATATATATATGTTATAATAAATAACATGAAATGC
1 ATATATATATATAATAATAAATAAAATGAAATGC
*
17222909 ATATATATTATATAATAATGAATTAAAATGAAA
1 ATATATA-TATATAATAAT-AAATAAAATGAAA
17222942 ACAAATAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 7 0.26
35 9 0.33
36 11 0.41
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (34 bp):
ATATATATATATAATAATAAATAAAATGAAATGC
Found at i:17223698 original size:19 final size:19
Alignment explanation
Indices: 17223637--17223699 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
17223627 ACAAGGATGA
*
17223637 GAAAT-GGATATGAGAT-TG
1 GAAATGGGATATGA-ATATT
*
17223655 GAAATGGAATATGAA-ATGAT
1 GAAATGGGATATGAATAT--T
17223675 GAAATGGGATATGAATATT
1 GAAATGGGATATGAATATT
17223694 GAAATG
1 GAAATG
17223700 AATTCATGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
18 7 0.19
19 14 0.38
20 14 0.38
21 2 0.05
ACGTcount: A:0.44, C:0.00, G:0.29, T:0.27
Consensus pattern (19 bp):
GAAATGGGATATGAATATT
Found at i:17229464 original size:45 final size:45
Alignment explanation
Indices: 17229408--17229502 Score: 163
Period size: 45 Copynumber: 2.1 Consensus size: 45
17229398 TACTATGTGA
* *
17229408 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
*
17229453 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
17229498 ACCGA
1 ACCGA
17229503 GTATCTGTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:17236966 original size:30 final size:30
Alignment explanation
Indices: 17236930--17236994 Score: 130
Period size: 30 Copynumber: 2.2 Consensus size: 30
17236920 ATATGCTTTT
17236930 AAAATATAAATGAAAACATAAATCAATAAA
1 AAAATATAAATGAAAACATAAATCAATAAA
17236960 AAAATATAAATGAAAACATAAATCAATAAA
1 AAAATATAAATGAAAACATAAATCAATAAA
17236990 AAAAT
1 AAAAT
17236995 GAAGGAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.20
Consensus pattern (30 bp):
AAAATATAAATGAAAACATAAATCAATAAA
Found at i:17236982 original size:18 final size:18
Alignment explanation
Indices: 17236931--17236982 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 18
17236921 TATGCTTTTA
17236931 AAATATAAATGAAAACAT
1 AAATATAAATGAAAACAT
*
17236949 -AA-ATCAAT--AAA-A-
1 AAATATAAATGAAAACAT
17236961 AAATATAAATGAAAACAT
1 AAATATAAATGAAAACAT
17236979 AAAT
1 AAAT
17236983 CAATAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 12
0.65 0.05 0.30
Matches are distributed among these distances:
13 3 0.12
14 8 0.31
16 8 0.31
17 3 0.12
18 4 0.15
ACGTcount: A:0.69, C:0.06, G:0.04, T:0.21
Consensus pattern (18 bp):
AAATATAAATGAAAACAT
Found at i:17237339 original size:36 final size:34
Alignment explanation
Indices: 17237294--17237361 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 34
17237284 CATATTACAA
*
17237294 AAAATGTATAAACATATAT-AAATTATAGAATATGGG
1 AAAACGTATAAACAT-TATGAAA-TATA-AATATGGG
*
17237330 AAAACGTATAAATATTATGAAATATAAATATG
1 AAAACGTATAAACATTATGAAATATAAATATG
17237362 TTTATATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 6 0.21
35 7 0.24
36 16 0.55
ACGTcount: A:0.54, C:0.03, G:0.12, T:0.31
Consensus pattern (34 bp):
AAAACGTATAAACATTATGAAATATAAATATGGG
Found at i:17237504 original size:3 final size:3
Alignment explanation
Indices: 17237496--17237555 Score: 56
Period size: 3 Copynumber: 20.3 Consensus size: 3
17237486 ATATATAGGT
17237496 ATA ATA ATA ATA TATA AT- ATA ATA ATA ATGA A-A ATA ATA AT- ATCA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA AT-A
*
17237541 ATA CTA ATA A-A ATA A
1 ATA ATA ATA ATA ATA A
17237556 ACTAAAAAAC
Statistics
Matches: 48, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
2 8 0.17
3 33 0.69
4 7 0.15
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:17239089 original size:128 final size:128
Alignment explanation
Indices: 17238940--17239173 Score: 326
Period size: 128 Copynumber: 1.8 Consensus size: 128
17238930 TGTTCTTTGC
* *
17238940 AACTTCAGAGAGATAAGATCTGCAGTTTCAATCCACTCCACTACAACCTCAGGGAGATAGGATTG
1 AACTTCAAAGAGATAAAATCTGCAGTTTCAATCCACTCCACTACAACCTCAGGGAGATAGGATT-
* * ** *
17239005 GT-GTCTTTTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTACTCTCTGT
65 ATCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATCTACTCTCTGT
** * * * * *
17239068 AACTTCAAAGAGATAAAATCTGTGGTTTTAATCCGCTTCACTACAACTTTAGGGAGATAGGATTA
1 AACTTCAAAGAGATAAAATCTGCAGTTTCAATCCACTCCACTACAACCTCAGGGAGATAGGATTA
17239133 TCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGA
66 TCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGA
17239174 TTTTCCATCT
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
127 1 0.01
128 90 0.99
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (128 bp):
AACTTCAAAGAGATAAAATCTGCAGTTTCAATCCACTCCACTACAACCTCAGGGAGATAGGATTA
TCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATCTACTCTCTGT
Found at i:17239142 original size:44 final size:42
Alignment explanation
Indices: 17239094--17239392 Score: 192
Period size: 44 Copynumber: 6.9 Consensus size: 42
17239084 AATCTGTGGT
* * * *
17239094 TTTAATCCGCTTCACTACAACTTTAGGGAGATAGGATTATCGGC
1 TTTAATCTGCTTCACTGCAACTTCAGGGAGATAAGATTAT--GC
* * * *
17239138 TTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTTCC
1 TTTAATCTGCTTCACTGCAACTTCAGGGAGATAAGATTATGC
* * * *
17239180 ATCTTCAGTCTGCCTCACTGCAACTTTA-GGAGGATAAGACT-TGC
1 -T-TT-AATCTGCTTCACTGCAACTTCAGGGA-GATAAGATTATGC
* * * * * *
17239224 TTACTTAGTCTGCTCCACTGCAACTTTAGGGAGATAGGACTA-GA
1 -T--TTAATCTGCTTCACTGCAACTTCAGGGAGATAAGATTATGC
* * * * * * *
17239268 TGTGATCTGC-TCTCTGCAACTTCAGAGAGATAAGATCCAAAGT
1 TTTAATCTGCTTCACTGCAACTTCAGGGAGATAAGAT--TATGC
* *
17239311 TTTAATCCGCTTCACTGCAACTTCAGGGAGATAGGATTATTGGC
1 TTTAATCTGCTTCACTGCAACTTCAGGGAGATAAGATTA-T-GC
* *
17239355 TTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATT
1 TTTAATCTGCTTCACTGCAACTTCAGGGAGATAAGATT
17239393 CGCCATTGCA
Statistics
Matches: 200, Mismatches: 42, Indels: 26
0.75 0.16 0.10
Matches are distributed among these distances:
40 20 0.10
41 6 0.03
42 3 0.01
43 10 0.05
44 130 0.65
45 31 0.16
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (42 bp):
TTTAATCTGCTTCACTGCAACTTCAGGGAGATAAGATTATGC
Found at i:17239852 original size:44 final size:44
Alignment explanation
Indices: 17239740--17239948 Score: 237
Period size: 44 Copynumber: 4.8 Consensus size: 44
17239730 ATCTGCTATT
* * *
17239740 TTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGTTC-ACGATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATCTACAATC
* * *
17239783 TTTAACCTATTCCAGTGCTGACCAGGGAGATAGGACCTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATCTACAATC
* *
17239827 TTCAATCTATTCCACTGCT-ACCCAGGGAGATAGAATTCT-CAATC
1 TTCAACCTATTCCACTGCTGA-CCAGGGAGATAGGA-TCTACAATC
* * *
17239871 TTCAACCTATTCCACTGCTGACAAGGGAGATAAGATTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATCTACAATC
* * *
17239915 TTTAACCTATTCCATTGCTGACCAGGGACATAGG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGG
17239949 GTTGGGGTCA
Statistics
Matches: 139, Mismatches: 21, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
43 33 0.24
44 103 0.74
45 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATCTACAATC
Done.