Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 65 of 187
Found at i:19349071 original size:70 final size:70
Alignment explanation
Indices: 19348981--19349153 Score: 251
Period size: 70 Copynumber: 2.5 Consensus size: 70
19348971 TCCTAATACC
* * * * * *
19348981 AAACTCAGTCAAGGCCTTAATATTAGTAGAGATTTATTAATTAAGTTGGTGTCTCTTGACTTGTG
1 AAACTCAATCAGGGCTTTAATATTAGTAGAGATTTATTAATTAAGTTGGTCTCACTTGACTAGTG
19349046 ACATC-
66 ACA-CG
* *
19349051 AAACTTAATCAGGGCTTTAATATTAGTAGAGATTTATTAATTGAGTTGGTCTCACTTGACTAGTG
1 AAACTCAATCAGGGCTTTAATATTAGTAGAGATTTATTAATTAAGTTGGTCTCACTTGACTAGTG
19349116 ACACG
66 ACACG
19349121 AAACTCAATCAGGGCTTTAA-ATTAGTAGAGATT
1 AAACTCAATCAGGGCTTTAATATTAGTAGAGATT
19349154 ATCGATATGT
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
69 14 0.15
70 79 0.85
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (70 bp):
AAACTCAATCAGGGCTTTAATATTAGTAGAGATTTATTAATTAAGTTGGTCTCACTTGACTAGTG
ACACG
Found at i:19349902 original size:25 final size:25
Alignment explanation
Indices: 19349864--19349923 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
19349854 TTGTACTTTT
*
19349864 AACCCAATACTTTATAATTCAATCC
1 AACCCAATACTTTAGAATTCAATCC
* *
19349889 AACCCAATATTTTAGGATTCAATCC
1 AACCCAATACTTTAGAATTCAATCC
19349914 AACCCAATAC
1 AACCCAATAC
19349924 ATATTTTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.40, C:0.28, G:0.03, T:0.28
Consensus pattern (25 bp):
AACCCAATACTTTAGAATTCAATCC
Found at i:19352654 original size:138 final size:138
Alignment explanation
Indices: 19352406--19352665 Score: 475
Period size: 138 Copynumber: 1.9 Consensus size: 138
19352396 AAAATACGAA
19352406 TATTCAACAAATCATAATCCACAAGTCAAATATAACATTACAAATTATTCTAATTTAAACCGTAC
1 TATTCAACAAATCATAATCCACAAGTCAAATATAACATTACAAATTATTCTAATTTAAACCGTAC
* *
19352471 GAACTTACAAGGGTTAGATTGTAGAGATAGTAAAAGTTCAAGGTCTAATCAGCAATTATTTGTAA
66 AAACTTACAAGGGTTAGATTGCAGAGATAGTAAAAGTTCAAGGTCTAATCAGCAATTATTTGTAA
19352536 TTGCTGAT
131 TTGCTGAT
*
19352544 TATTCAACAAATCATAATCCACGAGTCAAATATAACATTACAAATTATTCTAATTTAAACCGTAC
1 TATTCAACAAATCATAATCCACAAGTCAAATATAACATTACAAATTATTCTAATTTAAACCGTAC
* *
19352609 AAACTTACTAGGGTTAGATTGCATAGATAGTAAAAGTTCAAGGTCTAATCAGCAATT
66 AAACTTACAAGGGTTAGATTGCAGAGATAGTAAAAGTTCAAGGTCTAATCAGCAATT
19352666 TTCCTTTTTC
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 117 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.31
Consensus pattern (138 bp):
TATTCAACAAATCATAATCCACAAGTCAAATATAACATTACAAATTATTCTAATTTAAACCGTAC
AAACTTACAAGGGTTAGATTGCAGAGATAGTAAAAGTTCAAGGTCTAATCAGCAATTATTTGTAA
TTGCTGAT
Found at i:19353758 original size:15 final size:16
Alignment explanation
Indices: 19353738--19353778 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
19353728 GAATACACAT
19353738 GAATTTATATATAT-A
1 GAATTTATATATATAA
*
19353753 GAATTTAGAT-TATAA
1 GAATTTATATATATAA
*
19353768 AAATTTATATA
1 GAATTTATATA
19353779 AACAAAATAC
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
14 3 0.14
15 18 0.86
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (16 bp):
GAATTTATATATATAA
Found at i:19354090 original size:16 final size:16
Alignment explanation
Indices: 19354048--19354115 Score: 50
Period size: 16 Copynumber: 4.3 Consensus size: 16
19354038 AATAAATATG
*
19354048 TACATAAAAAAAT-AT
1 TACATATAAAAATAAT
*
19354063 T-CATGTAAAAAATAAT
1 TACATAT-AAAAATAAT
* *
19354079 TACATATGAAAATTAT
1 TACATATAAAAATAAT
* * *
19354095 AAAAAATAAAAATAAT
1 TACATATAAAAATAAT
19354111 TACAT
1 TACAT
19354116 TATTAAGATT
Statistics
Matches: 37, Mismatches: 13, Indels: 5
0.67 0.24 0.09
Matches are distributed among these distances:
14 3 0.08
15 7 0.19
16 23 0.62
17 4 0.11
ACGTcount: A:0.62, C:0.06, G:0.03, T:0.29
Consensus pattern (16 bp):
TACATATAAAAATAAT
Found at i:19354139 original size:16 final size:18
Alignment explanation
Indices: 19354107--19354140 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
19354097 AAAATAAAAA
19354107 TAATTACATTATTAAGAT
1 TAATTACATTATTAAGAT
19354125 TAATTA-ATT-TTAAGAT
1 TAATTACATTATTAAGAT
19354141 AAATGTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 3 0.19
18 6 0.38
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (18 bp):
TAATTACATTATTAAGAT
Found at i:19355918 original size:16 final size:17
Alignment explanation
Indices: 19355899--19355938 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
19355889 TTTTTTAATG
19355899 TTTTAAGTTTT-A-TTTA
1 TTTTAA-TTTTAACTTTA
19355915 TTTT-ATTTTAACTTTA
1 TTTTAATTTTAACTTTA
19355931 TTTTAATT
1 TTTTAATT
19355939 GAAATTTCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 4 0.19
15 2 0.10
16 12 0.57
17 3 0.14
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTTAATTTTAACTTTA
Found at i:19357395 original size:18 final size:17
Alignment explanation
Indices: 19357353--19357402 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
19357343 TCTACTTTAC
19357353 AATATTTTATTTACAAT
1 AATATTTTATTTACAAT
* *
19357370 TATCATTTTATTTCTCAAT
1 AAT-ATTTTATTT-ACAAT
19357389 AATATTTT-TTTACA
1 AATATTTTATTTACA
19357403 TCAATAGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
16 2 0.07
17 5 0.19
18 14 0.52
19 6 0.22
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.56
Consensus pattern (17 bp):
AATATTTTATTTACAAT
Found at i:19358404 original size:15 final size:17
Alignment explanation
Indices: 19358384--19358415 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
19358374 GGCAGCAGGG
19358384 GCGGCGG-TG-GTGTGC
1 GCGGCGGCTGTGTGTGC
19358399 GCGGCGGCTGTGTGTGC
1 GCGGCGGCTGTGTGTGC
19358416 AGCAGCGGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 2 0.13
17 6 0.40
ACGTcount: A:0.00, C:0.22, G:0.56, T:0.22
Consensus pattern (17 bp):
GCGGCGGCTGTGTGTGC
Found at i:19358404 original size:18 final size:18
Alignment explanation
Indices: 19358383--19358436 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
19358373 TGGCAGCAGG
19358383 GGCGGCGGTGGTGTGCGC
1 GGCGGCGGTGGTGTGCGC
*
19358401 GGCGGCTGT-GTGTGCAGC
1 GGCGGCGGTGGTGTGC-GC
* *
19358419 AGCGGCGCTGGTGGTGCG
1 GGCGGCGGTGGT-GTGCG
19358437 TCACAGGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 6 0.21
18 16 0.55
19 3 0.10
20 4 0.14
ACGTcount: A:0.04, C:0.22, G:0.56, T:0.19
Consensus pattern (18 bp):
GGCGGCGGTGGTGTGCGC
Found at i:19358990 original size:24 final size:24
Alignment explanation
Indices: 19358963--19359014 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
19358953 TTAGTAAGTC
*
19358963 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
19358987 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
19359011 AAAT
1 AAAT
19359015 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:19360393 original size:17 final size:18
Alignment explanation
Indices: 19360359--19360404 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
19360349 CCGTTATGTC
19360359 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
19360374 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
19360391 CGCGACCGCGACCG
1 CGCGACCGCGACCG
19360405 TAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:19362033 original size:31 final size:31
Alignment explanation
Indices: 19361980--19362050 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
19361970 AATATACTAT
* *
19361980 TTGGTACTTGAGTTTAGATTCAATGTTCAAA
1 TTGGTACCTGAATTTAGATTCAATGTTCAAA
* *
19362011 TTGGTACCTGAATTTGGTTTCAATGTTCAAA
1 TTGGTACCTGAATTTAGATTCAATGTTCAAA
19362042 TTGGTACCT
1 TTGGTACCT
19362051 AAACCAAACA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (31 bp):
TTGGTACCTGAATTTAGATTCAATGTTCAAA
Found at i:19374750 original size:184 final size:184
Alignment explanation
Indices: 19374435--19374787 Score: 499
Period size: 184 Copynumber: 1.9 Consensus size: 184
19374425 ATGGATTTAA
* * * *
19374435 GATTTATTCACTTGTGATATTCATAATGTGACATACCTTAATCCTGAGTGGATGACAGACTATGT
1 GATTTATTCACTTGTGATATTCATAATGTGACATACCTTAATCCTAAGTGAATGACAAACTATGC
* * * * *
19374500 ATGTGTAACTCATATACTTTGATGTAAATGAAAGCCCGAGTTCAAATATATAAGGAACTGAAAGT
66 ATGCGTAACTCATATACTTTGATGTAAATGAAAGCCCAAGTTCAAATAGATAAGAAACTAAAAGT
* ** *
19374565 TGATACATCGGGTATACGAGTTCTGCATAATGTAGCATCCTATATTTGTTTATG
131 TGATAAATCACGTATACGACTTCTGCATAATGTAGCATCCTATATTTGTTTATG
* ** *
19374619 GATTTATTCACTTGTGATGTTCATAATGTGGTATACCTTAATCCTAAGTGAATGATAAACTATGC
1 GATTTATTCACTTGTGATATTCATAATGTGACATACCTTAATCCTAAGTGAATGACAAACTATGC
* * * *
19374684 ATGCGTGACTCATATACTTTGATGTAAATGAAAGTCTAAGTTTAAATAGATAAGAAACTAAAAGT
66 ATGCGTAACTCATATACTTTGATGTAAATGAAAGCCCAAGTTCAAATAGATAAGAAACTAAAAGT
* *
19374749 TGGTAAATCACGTATATGACTTCTGCATAATGTAGCATC
131 TGATAAATCACGTATACGACTTCTGCATAATGTAGCATC
19374788 ATTCCACAAC
Statistics
Matches: 146, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
184 146 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.35
Consensus pattern (184 bp):
GATTTATTCACTTGTGATATTCATAATGTGACATACCTTAATCCTAAGTGAATGACAAACTATGC
ATGCGTAACTCATATACTTTGATGTAAATGAAAGCCCAAGTTCAAATAGATAAGAAACTAAAAGT
TGATAAATCACGTATACGACTTCTGCATAATGTAGCATCCTATATTTGTTTATG
Found at i:19377242 original size:10 final size:11
Alignment explanation
Indices: 19377195--19377247 Score: 74
Period size: 11 Copynumber: 4.9 Consensus size: 11
19377185 TGGGTGGTAA
19377195 AAAAAGAAGAG
1 AAAAAGAAGAG
*
19377206 AAAAAGAATAAG
1 AAAAAGAA-GAG
19377218 AAAAAGAAGAG
1 AAAAAGAAGAG
19377229 AAAAAG-AG-G
1 AAAAAGAAGAG
19377238 AAAAAGAAGA
1 AAAAAGAAGA
19377248 AAAGAAATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
9 7 0.19
10 4 0.11
11 16 0.43
12 10 0.27
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.02
Consensus pattern (11 bp):
AAAAAGAAGAG
Found at i:19377247 original size:23 final size:22
Alignment explanation
Indices: 19377193--19377254 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 22
19377183 ACTGGGTGGT
*
19377193 AAAAAAAGAAGAGAAAAAGAAT
1 AAAAAAAGAAGAGAAAAAGAAG
*
19377215 AAGAAAAAGAAGAGAAAAAGAGG
1 AA-AAAAAGAAGAGAAAAAGAAG
*
19377238 AAAAAGAAGAAAAGAAA
1 AAAAA-AAGAAGAGAAA
19377255 TTAAGATGTC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
22 5 0.14
23 30 0.86
ACGTcount: A:0.76, C:0.00, G:0.23, T:0.02
Consensus pattern (22 bp):
AAAAAAAGAAGAGAAAAAGAAG
Found at i:19377589 original size:47 final size:47
Alignment explanation
Indices: 19377521--19377641 Score: 131
Period size: 47 Copynumber: 2.6 Consensus size: 47
19377511 TTTGTAATAG
* *
19377521 TGTTGTTGTT--T-AAATGAAAAACCAGGTTATGTGATAGCTAGTAC
1 TGTTGTTGTTACTGAAATGGAAAACCAGGTTATGTAATAGCTAGTAC
* * ** * * *
19377565 TGTTGTTTTTATTGAAATGGAAAACCATTTTATGTAATAGTTGGTAT
1 TGTTGTTGTTACTGAAATGGAAAACCAGGTTATGTAATAGCTAGTAC
*
19377612 TGTTGTTGTTGCTGAAATGGAAAACCAGGT
1 TGTTGTTGTTACTGAAATGGAAAACCAGGT
19377642 AATGACTACT
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
44 9 0.15
46 1 0.02
47 51 0.84
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (47 bp):
TGTTGTTGTTACTGAAATGGAAAACCAGGTTATGTAATAGCTAGTAC
Found at i:19377892 original size:41 final size:41
Alignment explanation
Indices: 19377830--19377952 Score: 167
Period size: 41 Copynumber: 3.0 Consensus size: 41
19377820 GTTAGGTTTG
** * *
19377830 TTTGTTGTTTTAAATTAATTCTTTTCGTCTTTGAATCGATT-
1 TTTGTTGTTTTAAATCGATTCTTTGCTTCTTT-AATCGATTA
* *
19377871 TTTTTTGTTTTAAATCGATTCTTTGCTTACTTTAATCAATTA
1 TTTGTTGTTTTAAATCGATTCTTTGCTT-CTTTAATCGATTA
19377913 TTTGTTGTTTTAAATCGATTCTTTGCTTCTTTAATCGATT
1 TTTGTTGTTTTAAATCGATTCTTTGCTTCTTTAATCGATT
19377953 CATTATTATT
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
41 41 0.57
42 31 0.43
ACGTcount: A:0.20, C:0.11, G:0.11, T:0.58
Consensus pattern (41 bp):
TTTGTTGTTTTAAATCGATTCTTTGCTTCTTTAATCGATTA
Found at i:19377950 original size:20 final size:22
Alignment explanation
Indices: 19377879--19377976 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 22
19377869 TTTTTTTTGT
19377879 TTTAAATCGATTCTTTGCTTAC
1 TTTAAATCGATTCTTTGCTTAC
* * **
19377901 TTT-AATCAATTATTTG-TTGT
1 TTTAAATCGATTCTTTGCTTAC
19377921 TTTAAATCGATTCTTTGCTT-C
1 TTTAAATCGATTCTTTGCTTAC
* *
19377942 TTT-AATCGATTCATT-ATTA-
1 TTTAAATCGATTCTTTGCTTAC
*
19377961 TTTGAATCGATTCTTT
1 TTTAAATCGATTCTTT
19377977 ATTGTTTAAC
Statistics
Matches: 62, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
19 5 0.08
20 27 0.44
21 25 0.40
22 5 0.08
ACGTcount: A:0.23, C:0.13, G:0.09, T:0.54
Consensus pattern (22 bp):
TTTAAATCGATTCTTTGCTTAC
Found at i:19377978 original size:20 final size:19
Alignment explanation
Indices: 19377883--19377993 Score: 78
Period size: 20 Copynumber: 5.5 Consensus size: 19
19377873 TTTTGTTTTA
*
19377883 AATCGATTCTTTGCTTACTTT
1 AATCGATTCTTT-ATTA-TTT
* * * *
19377904 AATCAATTATTTGTTGTTTT
1 AATCGATTCTTTATT-ATTT
* *
19377924 AAATCGATTCTTTGCTTCTTT
1 -AATCGATTCTTT-ATTATTT
*
19377945 AATCGATTCATTATTATTT
1 AATCGATTCTTTATTATTT
*
19377964 GAATCGATTCTTTATTGTTT
1 -AATCGATTCTTTATTATTT
19377984 AACTCGATTC
1 AA-TCGATTC
19377994 AAACTCCAAC
Statistics
Matches: 72, Mismatches: 13, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
19 7 0.10
20 40 0.56
21 23 0.32
22 2 0.03
ACGTcount: A:0.23, C:0.14, G:0.10, T:0.52
Consensus pattern (19 bp):
AATCGATTCTTTATTATTT
Found at i:19378213 original size:21 final size:21
Alignment explanation
Indices: 19378156--19378222 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
19378146 GTTAGGTTTA
*
19378156 TTTGTTGTTTTAAATTGATTC
1 TTTGTTGTTTTAAATCGATTC
* * * *
19378177 TTTACTT-ATTTGAATCGATTG
1 TTT-GTTGTTTTAAATCGATTC
19378198 TTTGTTGTTTTAAATCGATTC
1 TTTGTTGTTTTAAATCGATTC
19378219 TTTG
1 TTTG
19378223 CTTCTTTAAT
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
20 2 0.06
21 31 0.89
22 2 0.06
ACGTcount: A:0.19, C:0.07, G:0.15, T:0.58
Consensus pattern (21 bp):
TTTGTTGTTTTAAATCGATTC
Found at i:19378230 original size:21 final size:21
Alignment explanation
Indices: 19378164--19378231 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
19378154 TATTTGTTGT
* *
19378164 TTTAAATTGATTCTTTACTTA
1 TTTAAATCGATTCTTTGCTTA
* * *
19378185 TTTGAATCGATTGTTTG-TTGT
1 TTTAAATCGATTCTTTGCTT-A
*
19378206 TTTAAATCGATTCTTTGCTTC
1 TTTAAATCGATTCTTTGCTTA
19378227 TTTAA
1 TTTAA
19378232 TTAAATCATT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 2 0.05
21 33 0.89
22 2 0.05
ACGTcount: A:0.22, C:0.10, G:0.12, T:0.56
Consensus pattern (21 bp):
TTTAAATCGATTCTTTGCTTA
Found at i:19378266 original size:20 final size:20
Alignment explanation
Indices: 19378237--19378279 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
19378227 TTTAATTAAA
*
19378237 TCATTATTGTTTGAATCAAT
1 TCATTATTGTTTAAATCAAT
* *
19378257 TCATTCTTGTTTAAATCGAT
1 TCATTATTGTTTAAATCAAT
19378277 TCA
1 TCA
19378280 AACTCCAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.28, C:0.14, G:0.09, T:0.49
Consensus pattern (20 bp):
TCATTATTGTTTAAATCAAT
Found at i:19378383 original size:36 final size:36
Alignment explanation
Indices: 19378315--19378405 Score: 136
Period size: 36 Copynumber: 2.6 Consensus size: 36
19378305 TATTCAGTTG
*
19378315 GTCCCTTATCAATACTTG-C---ACAACACATCATTT
1 GTCCCTTATCAATA-TTGACTTAACAACACAACATTT
19378348 GTCCCTTATCAATATTGACTTAACAACACAACATTT
1 GTCCCTTATCAATATTGACTTAACAACACAACATTT
19378384 GTCCCTTATCAATATTGACTTA
1 GTCCCTTATCAATATTGACTTA
19378406 CACCGATGTA
Statistics
Matches: 53, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
32 3 0.06
33 15 0.28
36 35 0.66
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.35
Consensus pattern (36 bp):
GTCCCTTATCAATATTGACTTAACAACACAACATTT
Found at i:19381899 original size:27 final size:27
Alignment explanation
Indices: 19381837--19381899 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
19381827 CTGCCAGAGG
**
19381837 GCCACAGGCGGCCCCAATGGTGCCTGT
1 GCCACAGGCGGCCCCAATGGTGCCCCT
* *
19381864 GGCAGAGGC-GCCACCAATGGTGCCCCT
1 GCCACAGGCGGCC-CCAATGGTGCCCCT
19381891 GCCACAGGC
1 GCCACAGGC
19381900 AGCACCCCCC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
26 3 0.10
27 26 0.90
ACGTcount: A:0.17, C:0.38, G:0.33, T:0.11
Consensus pattern (27 bp):
GCCACAGGCGGCCCCAATGGTGCCCCT
Found at i:19382901 original size:27 final size:27
Alignment explanation
Indices: 19382826--19382882 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
19382816 TAGTATTGGC
* *
19382826 GCCTATCTGGAAGGTGCCAATGGTGGT
1 GCCTACCTGGAAGGCGCCAATGGTGGT
19382853 GCCTACCTGGAAGGCGCCAATGGTGGT
1 GCCTACCTGGAAGGCGCCAATGGTGGT
19382880 GCC
1 GCC
19382883 ATTCTGAGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.25, G:0.37, T:0.21
Consensus pattern (27 bp):
GCCTACCTGGAAGGCGCCAATGGTGGT
Found at i:19383012 original size:22 final size:23
Alignment explanation
Indices: 19382960--19383012 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
19382950 CCAGAAACGA
* *
19382960 AAGAAATAAGAATGAAGGAAGCAG
1 AAGAAA-AAGAAGGAAGGAAGAAG
19382984 AAG-AAAAGAAGGAAGGAA-AAG
1 AAGAAAAAGAAGGAAGGAAGAAG
19383005 AAGAAAAA
1 AAGAAAAA
19383013 AATTAGGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 5 0.19
22 16 0.62
23 2 0.08
24 3 0.12
ACGTcount: A:0.66, C:0.02, G:0.28, T:0.04
Consensus pattern (23 bp):
AAGAAAAAGAAGGAAGGAAGAAG
Found at i:19387221 original size:620 final size:620
Alignment explanation
Indices: 19386041--19387280 Score: 2471
Period size: 620 Copynumber: 2.0 Consensus size: 620
19386031 TAAAATTGAT
19386041 GGTTTGATGGTGTGGTTCTAGGGGTATATTTTTGTGGAGCTCGACGCTCACGTTTTGGGCGATTA
1 GGTTTGATGGTGTGGTTCTAGGGGTATATTTTTGTGGAGCTCGACGCTCACGTTTTGGGCGATTA
*
19386106 CGGTTATCAACATTCTCCTCGACAGTATGTTGGGGTGTGTGAAACATAGATGAATAATCATATGT
66 CGGTTATCAACATTCTCCTCAACAGTATGTTGGGGTGTGTGAAACATAGATGAATAATCATATGT
19386171 CTCAAATGCCATCGATGAACTTGATCCGGGAGGAGAGGAGTACGACGGCGGATATTGGCCGGAAG
131 CTCAAATGCCATCGATGAACTTGATCCGGGAGGAGAGGAGTACGACGGCGGATATTGGCCGGAAG
19386236 GAGCGGAGTACTGAGGTAGATACGAGGCCACAAAATAGTCATCACCCGCTAATTCTGGATGATAA
196 GAGCGGAGTACTGAGGTAGATACGAGGCCACAAAATAGTCATCACCCGCTAATTCTGGATGATAA
19386301 GAACTATCCCTAGAATGTAGTTCTAGGTCTGGCTCTGGCTCTGGCTCTAGCTCCGGTGCATGATG
261 GAACTATCCCTAGAATGTAGTTCTAGGTCTGGCTCTGGCTCTGGCTCTAGCTCCGGTGCATGATG
19386366 CAGATCTCGAAGGGGTTGCGTAATTCGTGTCGTATGCGGAGGGACTACAATCGACCGCCCACCAA
326 CAGATCTCGAAGGGGTTGCGTAATTCGTGTCGTATGCGGAGGGACTACAATCGACCGCCCACCAA
19386431 ACAGAAATGGTTTCCCTGTCTCACAGTACCACTGTATATACTTTAACGAGGGCTGCAAATCCGGA
391 ACAGAAATGGTTTCCCTGTCTCACAGTACCACTGTATATACTTTAACGAGGGCTGCAAATCCGGA
19386496 GCACGATCTATTTGAGGTACCCTCCCGAACCGGTTGTTCCATATCGTAATATATTCTTCGTGCAC
456 GCACGATCTATTTGAGGTACCCTCCCGAACCGGTTGTTCCATATCGTAATATATTCTTCGTGCAC
19386561 TTCTTCCTAATTATCTCCATACCTCCCCTTCTTGTTCATCCCATGGATCTCCCCCAATTGTACTG
521 TTCTTCCTAATTATCTCCATACCTCCCCTTCTTGTTCATCCCATGGATCTCCCCCAATTGTACTG
19386626 GTAGTGTCGGGATATACTGTATGCAACTGAACTGC
586 GTAGTGTCGGGATATACTGTATGCAACTGAACTGC
19386661 GGTTTGATGGTGTGGTTCTAGGGGTATATTTTTGTGGAGCTCGACGCTCACGTTTTGGGCGATTA
1 GGTTTGATGGTGTGGTTCTAGGGGTATATTTTTGTGGAGCTCGACGCTCACGTTTTGGGCGATTA
19386726 CGGTTATCAACATTCTCCTCAACAGTATGTTGGGGTGTGTGAAACATAGATGAATAATCATATGT
66 CGGTTATCAACATTCTCCTCAACAGTATGTTGGGGTGTGTGAAACATAGATGAATAATCATATGT
19386791 CTCAAATGCCATCGATGAACTTGATCCGGGAGGAGAGGAGTACGACGGCGGATATTGGCCGGAAG
131 CTCAAATGCCATCGATGAACTTGATCCGGGAGGAGAGGAGTACGACGGCGGATATTGGCCGGAAG
19386856 GAGCGGAGTACTGAGGTAGATACGAGGCCACAAAATAGTCATCACCCGCTAATTCTGGATGATAA
196 GAGCGGAGTACTGAGGTAGATACGAGGCCACAAAATAGTCATCACCCGCTAATTCTGGATGATAA
19386921 GAACTATCCCTAGAATGTAGTTCTAGGTCTGGCTCTGGCTCTGGCTCTAGCTCCGGTGCATGATG
261 GAACTATCCCTAGAATGTAGTTCTAGGTCTGGCTCTGGCTCTGGCTCTAGCTCCGGTGCATGATG
19386986 CAGATCTCGAAGGGGTTGCGTAATTCGTGTCGTATGCGGAGGGACTACAATCGACCGCCCACCAA
326 CAGATCTCGAAGGGGTTGCGTAATTCGTGTCGTATGCGGAGGGACTACAATCGACCGCCCACCAA
19387051 ACAGAAATGGTTTCCCTGTCTCACAGTACCACTGTATATACTTTAACGAGGGCTGCAAATCCGGA
391 ACAGAAATGGTTTCCCTGTCTCACAGTACCACTGTATATACTTTAACGAGGGCTGCAAATCCGGA
19387116 GCACGATCTATTTGAGGTACCCTCCCGAACCGGTTGTTCCATATCGTAATATATTCTTCGTGCAC
456 GCACGATCTATTTGAGGTACCCTCCCGAACCGGTTGTTCCATATCGTAATATATTCTTCGTGCAC
19387181 TTCTTCCTAATTATCTCCATACCTCCCCTTCTTGTTCATCCCATGGATCTCCCCCAATTGTACTG
521 TTCTTCCTAATTATCTCCATACCTCCCCTTCTTGTTCATCCCATGGATCTCCCCCAATTGTACTG
19387246 GTAGTGTCGGGATATACTGTATGCAACTGAACTGC
586 GTAGTGTCGGGATATACTGTATGCAACTGAACTGC
19387281 CGGAGTACTT
Statistics
Matches: 619, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
620 619 1.00
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (620 bp):
GGTTTGATGGTGTGGTTCTAGGGGTATATTTTTGTGGAGCTCGACGCTCACGTTTTGGGCGATTA
CGGTTATCAACATTCTCCTCAACAGTATGTTGGGGTGTGTGAAACATAGATGAATAATCATATGT
CTCAAATGCCATCGATGAACTTGATCCGGGAGGAGAGGAGTACGACGGCGGATATTGGCCGGAAG
GAGCGGAGTACTGAGGTAGATACGAGGCCACAAAATAGTCATCACCCGCTAATTCTGGATGATAA
GAACTATCCCTAGAATGTAGTTCTAGGTCTGGCTCTGGCTCTGGCTCTAGCTCCGGTGCATGATG
CAGATCTCGAAGGGGTTGCGTAATTCGTGTCGTATGCGGAGGGACTACAATCGACCGCCCACCAA
ACAGAAATGGTTTCCCTGTCTCACAGTACCACTGTATATACTTTAACGAGGGCTGCAAATCCGGA
GCACGATCTATTTGAGGTACCCTCCCGAACCGGTTGTTCCATATCGTAATATATTCTTCGTGCAC
TTCTTCCTAATTATCTCCATACCTCCCCTTCTTGTTCATCCCATGGATCTCCCCCAATTGTACTG
GTAGTGTCGGGATATACTGTATGCAACTGAACTGC
Found at i:19388526 original size:774 final size:774
Alignment explanation
Indices: 19387038--19388584 Score: 3085
Period size: 774 Copynumber: 2.0 Consensus size: 774
19387028 GACTACAATC
19387038 GACCGCCCACCAAACAGAAATGGTTTCCCTGTCTCACAGTACCACTGTATATACTTTAACGAGGG
1 GACCGCCCACCAAACAGAAATGGTTTCCCTGTCTCACAGTACCACTGTATATACTTTAACGAGGG
19387103 CTGCAAATCCGGAGCACGATCTATTTGAGGTACCCTCCCGAACCGGTTGTTCCATATCGTAATAT
66 CTGCAAATCCGGAGCACGATCTATTTGAGGTACCCTCCCGAACCGGTTGTTCCATATCGTAATAT
19387168 ATTCTTCGTGCACTTCTTCCTAATTATCTCCATACCTCCCCTTCTTGTTCATCCCATGGATCTCC
131 ATTCTTCGTGCACTTCTTCCTAATTATCTCCATACCTCCCCTTCTTGTTCATCCCATGGATCTCC
19387233 CCCAATTGTACTGGTAGTGTCGGGATATACTGTATGCAACTGAACTGCCGGAGTACTTGATTGCC
196 CCCAATTGTACTGGTAGTGTCGGGATATACTGTATGCAACTGAACTGCCGGAGTACTTGATTGCC
19387298 ATGATACCACTCCACTACGTTAAAATTGATAATGGGTGCGCTAATGCACCATAGGTTTGAGTGGA
261 ATGATACCACTCCACTACGTTAAAATTGATAATGGGTGCGCTAATGCACCATAGGTTTGAGTGGA
19387363 CGCGGGCAGAAGATGGCATAACTGCCATAATTTCCGGAGCAGAATACGACATCCAAATGAACTGC
326 CGCGGGCAGAAGATGGCATAACTGCCATAATTTCCGGAGCAGAATACGACATCCAAATGAACTGC
19387428 ACAGTTAATAATGTTGTTATATTAACGCGGGTCGAGTGAGATAAAATAATAAAATTAAGTTTATA
391 ACAGTTAATAATGTTGTTATATTAACGCGGGTCGAGTGAGATAAAATAATAAAATTAAGTTTATA
19387493 TTCGAAAAACTTACCCCCTCTCCAGCATGATTCTCAATCATTAGACGATATATCGGAGCCGTCGG
456 TTCGAAAAACTTACCCCCTCTCCAGCATGATTCTCAATCATTAGACGATATATCGGAGCCGTCGG
19387558 TGACCTCCCGATACCCGGATTAGTACTCCACCTACGAAAACAAATTGTTAGAATAATATAATATA
521 TGACCTCCCGATACCCGGATTAGTACTCCACCTACGAAAACAAATTGTTAGAATAATATAATATA
19387623 AAAAAGTCAACTAATTATTATAATGAGTAAAAATTCATCACCTATTAATGAGTGGACATACATAT
586 AAAAAGTCAACTAATTATTATAATGAGTAAAAATTCATCACCTATTAATGAGTGGACATACATAT
19387688 GATTGATGACTAATGGATGCCAAGAATGGCATTCGGTAAAGTGCCCATGACTACAACAGTATGAG
651 GATTGATGACTAATGGATGCCAAGAATGGCATTCGGTAAAGTGCCCATGACTACAACAGTATGAG
*
19387753 GCATCCGCCTATGTCAACCGCAGAAGGATTTGTTGTCCGACAAAGTTCGCGATACAGCG
716 GCATCCGCCTATGTCAACCGCAGAAGGATCTGTTGTCCGACAAAGTTCGCGATACAGCG
19387812 GACCGCCCACCAAACAGAAATGGTTTCCCTGTCTCACAGTACCACTGTATATACTTTAACGAGGG
1 GACCGCCCACCAAACAGAAATGGTTTCCCTGTCTCACAGTACCACTGTATATACTTTAACGAGGG
19387877 CTGCAAATCCGGAGCACGATCTATTTGAGGTACCCTCCCGAACCGGTTGTTCCATATCGTAATAT
66 CTGCAAATCCGGAGCACGATCTATTTGAGGTACCCTCCCGAACCGGTTGTTCCATATCGTAATAT
19387942 ATTCTTCGTGCACTTCTTCCTAATTATCTCCATACCTCCCCTTCTTGTTCATCCCATGGATCTCC
131 ATTCTTCGTGCACTTCTTCCTAATTATCTCCATACCTCCCCTTCTTGTTCATCCCATGGATCTCC
19388007 CCCAATTGTACTGGTAGTGTCGGGATATACTGTATGCAACTGAACTGCCGGAGTACTTGATTGCC
196 CCCAATTGTACTGGTAGTGTCGGGATATACTGTATGCAACTGAACTGCCGGAGTACTTGATTGCC
19388072 ATGATACCACTCCACTACGTTAAAATTGATAATGGGTGCGCTAATGCACCATAGGTTTGAGTGGA
261 ATGATACCACTCCACTACGTTAAAATTGATAATGGGTGCGCTAATGCACCATAGGTTTGAGTGGA
19388137 CGCGGGCAGAAGATGGCATAACTGCCATAATTTCCGGAGCAGAATACGACATCCAAATGAACTGC
326 CGCGGGCAGAAGATGGCATAACTGCCATAATTTCCGGAGCAGAATACGACATCCAAATGAACTGC
19388202 ACAGTTAATAATGTTGTTATATTAACGCGGGTCGAGTGAGATAAAATAATAAAATTAAGTTTATA
391 ACAGTTAATAATGTTGTTATATTAACGCGGGTCGAGTGAGATAAAATAATAAAATTAAGTTTATA
19388267 TTCGAAAAACTTACCCCCTCTCCAGCATGATTCTCAATCATTAGACGATATATCGGAGCCGTCGG
456 TTCGAAAAACTTACCCCCTCTCCAGCATGATTCTCAATCATTAGACGATATATCGGAGCCGTCGG
19388332 TGACCTCCCGATACCCGGATTAGTACTCCACCTACGAAAACAAATTGTTAGAATAATATAATATA
521 TGACCTCCCGATACCCGGATTAGTACTCCACCTACGAAAACAAATTGTTAGAATAATATAATATA
19388397 AAAAAGTCAACTAATTATTATAATGAGTAAAAATTCATCACCTATTAATGAGTGGACATACATAT
586 AAAAAGTCAACTAATTATTATAATGAGTAAAAATTCATCACCTATTAATGAGTGGACATACATAT
19388462 GATTGATGACTAATGGATGCCAAGAATGGCATTCGGTAAAGTGCCCATGACTACAACAGTATGAG
651 GATTGATGACTAATGGATGCCAAGAATGGCATTCGGTAAAGTGCCCATGACTACAACAGTATGAG
19388527 GCATCCGCCTATGTCAACCGCAGAAGGATCTGTTGTCCGACAAAGTTCGCGATACAGC
716 GCATCCGCCTATGTCAACCGCAGAAGGATCTGTTGTCCGACAAAGTTCGCGATACAGC
19388585 ATGGCTAAAA
Statistics
Matches: 772, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
774 772 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (774 bp):
GACCGCCCACCAAACAGAAATGGTTTCCCTGTCTCACAGTACCACTGTATATACTTTAACGAGGG
CTGCAAATCCGGAGCACGATCTATTTGAGGTACCCTCCCGAACCGGTTGTTCCATATCGTAATAT
ATTCTTCGTGCACTTCTTCCTAATTATCTCCATACCTCCCCTTCTTGTTCATCCCATGGATCTCC
CCCAATTGTACTGGTAGTGTCGGGATATACTGTATGCAACTGAACTGCCGGAGTACTTGATTGCC
ATGATACCACTCCACTACGTTAAAATTGATAATGGGTGCGCTAATGCACCATAGGTTTGAGTGGA
CGCGGGCAGAAGATGGCATAACTGCCATAATTTCCGGAGCAGAATACGACATCCAAATGAACTGC
ACAGTTAATAATGTTGTTATATTAACGCGGGTCGAGTGAGATAAAATAATAAAATTAAGTTTATA
TTCGAAAAACTTACCCCCTCTCCAGCATGATTCTCAATCATTAGACGATATATCGGAGCCGTCGG
TGACCTCCCGATACCCGGATTAGTACTCCACCTACGAAAACAAATTGTTAGAATAATATAATATA
AAAAAGTCAACTAATTATTATAATGAGTAAAAATTCATCACCTATTAATGAGTGGACATACATAT
GATTGATGACTAATGGATGCCAAGAATGGCATTCGGTAAAGTGCCCATGACTACAACAGTATGAG
GCATCCGCCTATGTCAACCGCAGAAGGATCTGTTGTCCGACAAAGTTCGCGATACAGCG
Found at i:19389403 original size:16 final size:15
Alignment explanation
Indices: 19389372--19389413 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
19389362 ACAAAATCAA
*
19389372 ATAAAATTTAATTAT
1 ATAAAAGTTAATTAT
19389387 ATAAAAGTTACATTAT
1 ATAAAAGTTA-ATTAT
*
19389403 ATAAAAATTAA
1 ATAAAAGTTAA
19389414 ATGAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (15 bp):
ATAAAAGTTAATTAT
Found at i:19389493 original size:38 final size:38
Alignment explanation
Indices: 19389450--19389531 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
19389440 AAAAAGTCAG
19389450 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTTT
1 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTTT
*
19389488 TTATAATTAAACTTTTAATGAAATGATTTTTAATTTTT
1 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTTT
19389526 TTATAA
1 TTATAA
19389532 ACTTTATATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (38 bp):
TTATAATTAAACTTTTAATAAAATGATTTTTAATTTTT
Found at i:19389641 original size:60 final size:60
Alignment explanation
Indices: 19389565--19389686 Score: 165
Period size: 60 Copynumber: 2.0 Consensus size: 60
19389555 ATACTAAACT
* * * * * *
19389565 AAACACAACAACTTATAGCTTAATCCTAAATTACTAATAAATTAAATT-TTAAATAATTAC
1 AAACACAAAAACTTATAACATAATCCCAAATTACTAACAAATT-AATTATAAAATAATTAC
*
19389625 AAACACAAAAATTTATAACATAATCCCAAATTACTAACAAATTAATTATAAAATAATTAC
1 AAACACAAAAACTTATAACATAATCCCAAATTACTAACAAATTAATTATAAAATAATTAC
19389685 AA
1 AA
19389687 TATTCATACA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
59 4 0.07
60 50 0.93
ACGTcount: A:0.54, C:0.15, G:0.01, T:0.30
Consensus pattern (60 bp):
AAACACAAAAACTTATAACATAATCCCAAATTACTAACAAATTAATTATAAAATAATTAC
Found at i:19389763 original size:27 final size:25
Alignment explanation
Indices: 19389727--19389919 Score: 199
Period size: 27 Copynumber: 7.8 Consensus size: 25
19389717 ATATCCCCAC
19389727 ATTACAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAA-TA-AAT
19389754 ATTACAATATTCATAC-AAA-AAA-
1 ATTACAATATTCATACAAAATAAAT
*
19389776 ATTGCAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAA-TA-AAT
*
19389803 ATTACAACATTCATACAAAA-AAAT
1 ATTACAATATTCATACAAAATAAAT
*
19389827 A-T--AATATTCATACAAAATTACAAA
1 ATTACAATATTCATACAAAA-TA-AAT
19389851 ATTACAATATTCATAC-AAA-AAA-
1 ATTACAATATTCATACAAAATAAAT
* *
19389873 ATTGCAATATTCATACAAAACTACAAA
1 ATTACAATATTCATACAAAA-TA-AAT
19389900 ATTACAATATTCATACAAAA
1 ATTACAATATTCATACAAAA
19389920 AATTACTAAT
Statistics
Matches: 143, Mismatches: 7, Indels: 32
0.79 0.04 0.18
Matches are distributed among these distances:
21 14 0.10
22 30 0.21
23 12 0.08
24 9 0.06
25 4 0.03
26 10 0.07
27 64 0.45
ACGTcount: A:0.55, C:0.15, G:0.01, T:0.30
Consensus pattern (25 bp):
ATTACAATATTCATACAAAATAAAT
Found at i:19389804 original size:49 final size:49
Alignment explanation
Indices: 19389731--19389921 Score: 314
Period size: 49 Copynumber: 3.9 Consensus size: 49
19389721 CCCCACATTA
*
19389731 CAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAATTG
1 CAATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTG
* * *
19389780 CAATATTCATACAAAATTATAATATTACAACATTCATACAAAAAAATAT-
1 CAATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAAT-TG
19389829 -AATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTG
1 CAATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTG
*
19389877 CAATATTCATACAAAACTACAAAATTACAATATTCATACAAAAAA
1 CAATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAA
19389922 TTACTAATCC
Statistics
Matches: 133, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
47 1 0.01
48 43 0.32
49 88 0.66
50 1 0.01
ACGTcount: A:0.55, C:0.15, G:0.01, T:0.29
Consensus pattern (49 bp):
CAATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTG
Found at i:19389845 original size:97 final size:97
Alignment explanation
Indices: 19389732--19389921 Score: 335
Period size: 97 Copynumber: 2.0 Consensus size: 97
19389722 CCCACATTAC
* *
19389732 AATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAAT
1 AATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAAC
* *
19389797 TATAATATTACAACATTCATACAAAAAAATAT
66 TACAAAATTACAACATTCATACAAAAAAATAT
19389829 AATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAAC
1 AATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAAC
*
19389894 TACAAAATTACAATATTCATACAAAAAA
66 TACAAAATTACAACATTCATACAAAAAA
19389922 TTACTAATCC
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
97 88 1.00
ACGTcount: A:0.56, C:0.14, G:0.01, T:0.29
Consensus pattern (97 bp):
AATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAAC
TACAAAATTACAACATTCATACAAAAAAATAT
Found at i:19389869 original size:19 final size:19
Alignment explanation
Indices: 19389727--19389805 Score: 66
Period size: 19 Copynumber: 4.6 Consensus size: 19
19389717 ATATCCCCAC
19389727 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
*
19389746 ATTACAATA-T--TACAAT
1 ATTACAATATTCATACAAA
*
19389762 ATT-C-ATA--CA-AAAAA
1 ATTACAATATTCATACAAA
*
19389776 ATTGCAATATTCATACAAA
1 ATTACAATATTCATACAAA
*
19389795 ATTATAATATT
1 ATTACAATATT
19389806 ACAACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
14 9 0.19
15 2 0.04
16 11 0.23
18 3 0.06
19 22 0.47
ACGTcount: A:0.52, C:0.13, G:0.01, T:0.34
Consensus pattern (19 bp):
ATTACAATATTCATACAAA
Found at i:19389988 original size:19 final size:19
Alignment explanation
Indices: 19389963--19390045 Score: 94
Period size: 19 Copynumber: 4.2 Consensus size: 19
19389953 ATTATAAAAT
19389963 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
* * *
19389982 CATTACAATATTCAAAAAA
1 AATTACAATATTCATACAA
*
19390001 AATTATAATATTCATACAAAAA
1 AATTACAATATTCATAC---AA
*
19390023 AATTAAAATATTCATACAA
1 AATTACAATATTCATACAA
19390042 AATT
1 AATT
19390046 CTAATCTAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
19 35 0.66
22 18 0.34
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (19 bp):
AATTACAATATTCATACAA
Found at i:19390024 original size:22 final size:22
Alignment explanation
Indices: 19389996--19390043 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
19389986 ACAATATTCA
*
19389996 AAAAAAATTATAATATTCATAC
1 AAAAAAATTAAAATATTCATAC
19390018 AAAAAAATTAAAATATTCATAC
1 AAAAAAATTAAAATATTCATAC
19390040 AAAA
1 AAAA
19390044 TTCTAATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (22 bp):
AAAAAAATTAAAATATTCATAC
Found at i:19390033 original size:41 final size:38
Alignment explanation
Indices: 19389958--19390050 Score: 96
Period size: 41 Copynumber: 2.4 Consensus size: 38
19389948 ATTTAATTAT
* * * *
19389958 AAAATAATTACAATATTCATACAACATTACAATATTCA
1 AAAAAAATTATAATATTCATACAAAATTAAAATATTCA
19389996 AAAAAAATTATAATATTCATACAAAAAAATTAAAATATTCA
1 AAAAAAATTATAATATTCATAC---AAAATTAAAATATTCA
* * *
19390037 TACAAAATTCTAAT
1 AAAAAAATTATAAT
19390051 CTAAACTATA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
38 20 0.44
41 25 0.56
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (38 bp):
AAAAAAATTATAATATTCATACAAAATTAAAATATTCA
Found at i:19391268 original size:21 final size:21
Alignment explanation
Indices: 19391244--19391287 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
19391234 TGGTAATTAA
*
19391244 ATTTTTTTGTATATTATTTTG
1 ATTTTTTTGTATAATATTTTG
* *
19391265 ATTTTTTTTTGTAATATTTTG
1 ATTTTTTTGTATAATATTTTG
19391286 AT
1 AT
19391288 AAAAAAAACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.70
Consensus pattern (21 bp):
ATTTTTTTGTATAATATTTTG
Found at i:19391275 original size:23 final size:21
Alignment explanation
Indices: 19391245--19391287 Score: 68
Period size: 23 Copynumber: 2.0 Consensus size: 21
19391235 GGTAATTAAA
19391245 TTTTTTTGTATATTATTTTGATT
1 TTTTTTTGTA-A-TATTTTGATT
19391268 TTTTTTTGTAATATTTTGAT
1 TTTTTTTGTAATATTTTGAT
19391288 AAAAAAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 9 0.45
22 1 0.05
23 10 0.50
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (21 bp):
TTTTTTTGTAATATTTTGATT
Found at i:19393682 original size:75 final size:73
Alignment explanation
Indices: 19393596--19393745 Score: 167
Period size: 73 Copynumber: 2.0 Consensus size: 73
19393586 ATGATATTTG
** * *
19393596 TACTTTCAATTTATTTGTTTTGGTACTTATACTTTATTTCTCGTATATCACTTTGATA-TTCTGG
1 TACTTTCAATTTATTCATTTTGATACTTAT-CTTTATTTCT-GTACATCACTTTGATACTT-TGG
* *
19393660 CCTAATGGTGT
63 CATAATAGTGT
* * * * *
19393671 TACTTTTAATTTGTTCATTTTGATACTTATGTTTTTTTCTGTACATCACTTTGGTACTTTGGCAT
1 TACTTTCAATTTATTCATTTTGATACTTATCTTTATTTCTGTACATCACTTTGATACTTTGGCAT
19393736 AATAGTGT
66 AATAGTGT
19393744 TA
1 TA
19393746 ATTCTTAAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
73 28 0.44
74 10 0.16
75 25 0.40
ACGTcount: A:0.21, C:0.13, G:0.13, T:0.53
Consensus pattern (73 bp):
TACTTTCAATTTATTCATTTTGATACTTATCTTTATTTCTGTACATCACTTTGATACTTTGGCAT
AATAGTGT
Found at i:19395843 original size:22 final size:23
Alignment explanation
Indices: 19395803--19395845 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
19395793 CTCTTGTTTC
*
19395803 AAATATTTTATAAAAATTAAACT
1 AAATATATTATAAAAATTAAACT
19395826 AAATATATTAT-AAAATTAAA
1 AAATATATTATAAAAATTAAA
19395846 AGATCATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
AAATATATTATAAAAATTAAACT
Found at i:19396468 original size:24 final size:24
Alignment explanation
Indices: 19396453--19396504 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
19396443 AATCAAAGTC
19396453 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
19396477 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
19396501 AAAT
1 AAAT
19396505 CTTCTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:19404087 original size:24 final size:24
Alignment explanation
Indices: 19404045--19404096 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
19404035 AATCAAAGTC
** *
19404045 AAATATATTATGTTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
19404069 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
19404093 AAAT
1 AAAT
19404097 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:19404635 original size:19 final size:19
Alignment explanation
Indices: 19404611--19404648 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
19404601 CAAGCAACTT
19404611 AAAAAATTGATAACATTTA
1 AAAAAATTGATAACATTTA
*
19404630 AAAAAATTGATAATATTTA
1 AAAAAATTGATAACATTTA
19404649 TTTTTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (19 bp):
AAAAAATTGATAACATTTA
Found at i:19405719 original size:2 final size:2
Alignment explanation
Indices: 19405712--19405743 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
19405702 TTACCGTCTG
19405712 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
19405744 TATTTCCTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:19413663 original size:17 final size:17
Alignment explanation
Indices: 19413641--19413679 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
19413631 TATAATTAAT
19413641 TTTAAAAGGTTAATATA
1 TTTAAAAGGTTAATATA
**
19413658 TTTAAAATTTTAATATA
1 TTTAAAAGGTTAATATA
*
19413675 CTTAA
1 TTTAA
19413680 TATATATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (17 bp):
TTTAAAAGGTTAATATA
Found at i:19413739 original size:9 final size:9
Alignment explanation
Indices: 19413727--19413823 Score: 51
Period size: 10 Copynumber: 10.7 Consensus size: 9
19413717 TAATATATTT
19413727 AAAATTTTA
1 AAAATTTTA
19413736 AAAATTTTAA
1 AAAATTTT-A
*
19413746 AAAAATTTA
1 AAAATTTTA
* *
19413755 AATATATTA
1 AAAATTTTA
*
19413764 GAAAATGTT-
1 -AAAATTTTA
*
19413773 -AAA-TATA
1 AAAATTTTA
*
19413780 ACTAATTTT-
1 A-AAATTTTA
19413789 AAAATTTT-
1 AAAATTTTA
19413797 AAAATATTTA
1 AAAAT-TTTA
19413807 AAATATTTTA
1 AAA-ATTTTA
19413817 AGAAATT
1 A-AAATT
19413824 AAATATATTA
Statistics
Matches: 67, Mismatches: 11, Indels: 19
0.69 0.11 0.20
Matches are distributed among these distances:
6 1 0.01
7 3 0.04
8 11 0.16
9 21 0.31
10 27 0.40
11 4 0.06
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (9 bp):
AAAATTTTA
Found at i:19413768 original size:19 final size:19
Alignment explanation
Indices: 19413718--19413850 Score: 59
Period size: 18 Copynumber: 7.3 Consensus size: 19
19413708 AGATTTTCTT
* *
19413718 AATATATT-TAAAATTTTA
1 AATATATTAAAAAAATTTA
* *
19413736 AAAATTTTAAAAAAATTTA
1 AATATATTAAAAAAATTTA
*
19413755 AATATATT-AGAAAATGTT-
1 AATATATTAAAAAAAT-TTA
** *
19413773 AA-ATA-TAACTAATTTTA
1 AATATATTAAAAAAATTTA
* *
19413790 AA-AT-TTTAAAATATTTA
1 AATATATTAAAAAAATTTA
* *
19413807 AA-ATATTTTAAGAAA-TTA
1 AATATA-TTAAAAAAATTTA
19413825 AATATATTAAAAAAATGTTA
1 AATATATTAAAAAAAT-TTA
*
19413845 AGTATA
1 AATATA
19413851 ACCAATTTTA
Statistics
Matches: 85, Mismatches: 20, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
16 3 0.04
17 22 0.26
18 26 0.31
19 26 0.31
20 8 0.09
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.41
Consensus pattern (19 bp):
AATATATTAAAAAAATTTA
Found at i:19413826 original size:70 final size:72
Alignment explanation
Indices: 19413724--19413875 Score: 204
Period size: 71 Copynumber: 2.2 Consensus size: 72
19413714 TCTTAATATA
* *
19413724 TTTAAAAT-TTTAAAAATTTTAAAAAAATTTAAATATATT-AGAAAATGTTAAATATAACTAATT
1 TTTAAAATATTTAAAAATTTTAAAAAAATTTAAATATATTAAAAAAATGTTAAATATAACCAATT
19413787 TTAAAAT
66 TTAAAAT
* *
19413794 TTTAAAATATTTAAAATATTTT-AAGAAA-TTAAATATATTAAAAAAATGTTAAGTATAACCAAT
1 TTTAAAATATTTAAAA-ATTTTAAAAAAATTTAAATATATTAAAAAAATGTTAAATATAACCAAT
**
19413857 TTTAATTT
65 TTTAAAAT
*
19413865 TTTAATATATT
1 TTTAAAATATT
19413876 CAATATTTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
70 19 0.26
71 48 0.67
72 5 0.07
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.43
Consensus pattern (72 bp):
TTTAAAATATTTAAAAATTTTAAAAAAATTTAAATATATTAAAAAAATGTTAAATATAACCAATT
TTAAAAT
Found at i:19414069 original size:69 final size:69
Alignment explanation
Indices: 19413979--19414129 Score: 198
Period size: 70 Copynumber: 2.2 Consensus size: 69
19413969 CCTATTAAAA
* * * *
19413979 AATATATTAAAATATTAAAATTTT-AAATTTGGTTATACTTAA-ATTTTTTTTAAAATGTTCAAA
1 AATATATTAAAATATTAAAATTTTAAAATAT-GTTATACTCAACATTTTCTTTAAAATATTCAAA
19414042 ATTTT
65 ATTTT
* * *
19414047 AATATATTAAGTATATTAAAATTTTAAAATATGTTATACTCAACATTTTCTTTAACATATTTAAA
1 AATATATTAA-AATATTAAAATTTTAAAATATGTTATACTCAACATTTTCTTTAAAATATTCAAA
19414112 ATTTT
65 ATTTT
*
19414117 AATATATTTAAAT
1 AATATATTAAAAT
19414130 TTTTTTTGTG
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
68 10 0.14
69 25 0.35
70 36 0.51
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (69 bp):
AATATATTAAAATATTAAAATTTTAAAATATGTTATACTCAACATTTTCTTTAAAATATTCAAAA
TTTT
Found at i:19414133 original size:17 final size:17
Alignment explanation
Indices: 19414097--19414132 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
19414087 CAACATTTTC
19414097 TTTAACATATTTAAAAT
1 TTTAACATATTTAAAAT
*
19414114 TTTAATATATTT-AAAT
1 TTTAACATATTTAAAAT
19414130 TTT
1 TTT
19414133 TTTTGTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTAACATATTTAAAAT
Found at i:19414399 original size:18 final size:17
Alignment explanation
Indices: 19414353--19414391 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
19414343 AAAATATATA
*
19414353 TTAAGTATATTAAAATT
1 TTAAATATATTAAAATT
19414370 TTAAATATATTAAAATT
1 TTAAATATATTAAAATT
19414387 TTAAA
1 TTAAA
19414392 ATTAATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
TTAAATATATTAAAATT
Found at i:19414422 original size:42 final size:41
Alignment explanation
Indices: 19414352--19414432 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 41
19414342 AAAAATATAT
19414352 ATTAAGTATATTAAAATTTTAAATATA-TTAAAATTTTAAA
1 ATTAAGTATATTAAAATTTTAAATATATTTAAAATTTTAAA
* * * *
19414392 ATTAATTATACTTAATATTTTTTAATATATTTAAACTTTTA
1 ATTAAGTATA-TTAA-AATTTTAAATATATTTAAAATTTTA
19414433 GAAAATAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
40 9 0.26
41 4 0.12
42 11 0.32
43 10 0.29
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (41 bp):
ATTAAGTATATTAAAATTTTAAATATATTTAAAATTTTAAA
Found at i:19414432 original size:146 final size:152
Alignment explanation
Indices: 19414140--19414432 Score: 355
Period size: 146 Copynumber: 2.0 Consensus size: 152
19414130 TTTTTTTGTG
*
19414140 TTTTTTAAAATTTTAAATATATTAAAAAATCTTTTTTCTCTTTACCTATTAAAAATCTATTAAAA
1 TTTTTTAAAATTTTAAATATATTAAAAAATCTTTTTTCTCTTTACCTATTAAAAATATATTAAAA
* * * * **
19414205 ATTTAAAATACATTTTTAAAAAAGATATTGAATATATTAAAATTTGTTATACTTAACATTTTTTA
66 ATGTAAAATAAAATTTT--AAAAGATATTGAAAATATTAAAATTAATTATACTTAACATTTTTTA
**
19414270 ATATATTTAATTTTTTAAAATATA
129 ATATATTTAAACTTTTAAAATATA
** * **
19414294 TTTTTTAAAATTTTAAATATATT-ACGAAT-TTTTTTGTCTTTACCTATTAAAAATATA-TATTA
1 TTTTTTAAAATTTTAAATATATTAAAAAATCTTTTTTCTCTTTACCTATTAAAAATATATTAAAA
* * * * *
19414356 A-GTATATTAAAATTTT-AAATATATT-AAAATTTTAAAATTAATTATACTTAATATTTTTTAAT
66 ATGTAAAATAAAATTTTAAAAGATATTGAAAATATTAAAATTAATTATACTTAACATTTTTTAAT
19414418 ATATTTAAACTTTTA
131 ATATTTAAACTTTTA
19414433 GAAAATAAAA
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
146 45 0.38
147 8 0.07
150 10 0.08
151 4 0.03
152 26 0.22
153 4 0.03
154 23 0.19
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (152 bp):
TTTTTTAAAATTTTAAATATATTAAAAAATCTTTTTTCTCTTTACCTATTAAAAATATATTAAAA
ATGTAAAATAAAATTTTAAAAGATATTGAAAATATTAAAATTAATTATACTTAACATTTTTTAAT
ATATTTAAACTTTTAAAATATA
Found at i:19424317 original size:106 final size:106
Alignment explanation
Indices: 19424129--19424667 Score: 846
Period size: 106 Copynumber: 5.1 Consensus size: 106
19424119 TTCTAATTGA
* * * *
19424129 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGTAAAATCGAGAAAACGTGCCCTAACGTGCTGG
1 AAAATTTCAAAGCAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGG
* * *
19424194 GTTTCGATTTCTTGTTCGACCAAATAGTCAAATATCATTTT
66 GTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
** *
19424235 AAAATTTCAAAGCAAGGCAATATTTTGCGTTCAGAAATTCGAGAAAACGTGCCCTAATGTGCTGG
1 AAAATTTCAAAGCAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGG
*
19424300 GTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTC
66 GTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
* *
19424341 AAAATTTCAAAGCAAGGCAATATTTTACGTTTGGAAATTCGAGATAACGTGCCCTAACGTGCTGG
1 AAAATTTCAAAGCAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGG
* *
19424406 GTTTCGATTTCTCGTTCGACCAAATAGTCAAATATCGTTTT
66 GTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
* * *
19424447 AAAATTTCAAAGTAAGGCAATATTTTGCCTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGG
1 AAAATTTCAAAGCAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGG
*
19424512 GTTTCGATTTCTCGTTCGACGAAATAGCCAAATATCCTTTT
66 GTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
* ** *
19424553 AAAATTTCAAAGCAAGGTAATATTTTATGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGTTGG
1 AAAATTTCAAAGCAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGG
* *
19424618 GTTTTGATTTCTCGTTCGACCAAATAGCCAAATATCCTCTT
66 GTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
19424659 -AAATTTCAA
1 AAAATTTCAA
19424668 TCCATGTTAT
Statistics
Matches: 396, Mismatches: 37, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
105 9 0.02
106 387 0.98
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (106 bp):
AAAATTTCAAAGCAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGG
GTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
Found at i:19425245 original size:15 final size:15
Alignment explanation
Indices: 19425208--19425239 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
19425198 TGCATAGTCT
19425208 TCATCGTTTTGTATG
1 TCATCGTTTTGTATG
19425223 TCATCGTTTTGTATG
1 TCATCGTTTTGTATG
19425238 TC
1 TC
19425240 TACGTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.16, G:0.19, T:0.53
Consensus pattern (15 bp):
TCATCGTTTTGTATG
Found at i:19429536 original size:22 final size:22
Alignment explanation
Indices: 19429511--19429555 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
19429501 GGAGGTCTTG
19429511 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
19429533 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
19429555 T
1 T
19429556 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:19434140 original size:22 final size:22
Alignment explanation
Indices: 19434112--19434156 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
19434102 AGGGGGAGTG
19434112 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
19434134 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
19434156 T
1 T
19434157 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:19435815 original size:24 final size:24
Alignment explanation
Indices: 19435788--19435838 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
19435778 AAGCAAAGAA
19435788 AGAAAGAGTTGGAAATGAGGCAAG
1 AGAAAGAGTTGGAAATGAGGCAAG
19435812 AGAAAGAGTTGGAAATGAGGCAAG
1 AGAAAGAGTTGGAAATGAGGCAAG
19435836 AGA
1 AGA
19435839 GGTAGAAGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.47, C:0.04, G:0.37, T:0.12
Consensus pattern (24 bp):
AGAAAGAGTTGGAAATGAGGCAAG
Found at i:19440787 original size:44 final size:44
Alignment explanation
Indices: 19440604--19441323 Score: 304
Period size: 44 Copynumber: 16.7 Consensus size: 44
19440594 TCGTATCCAG
* **
19440604 TCTTATCTCCCTGAAGTTGCAGTGG-GACAGGCAGAAGAAGTCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAG-CAGACAGAAGAAACCAA
* * * * * **
19440648 TCCTATCTCCCTGAAATTGTAGTGAAGC-G-GATTA-AAACCATAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACC--A-A
* * * *
19440692 TCTTATCTCTCTTAAGTTGCAGT--AG-AGA-A-AATCGCATCCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAA--GAAACCAA
* * *
19440733 TCTTATCTCCCTAAAGTTGCAGTAGAGCGGACAGAAGAAACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAA
* * * ** *
19440777 TCCTATCTCCCTGAAGTTACAGTGGAGCGGA-TTAA-AACCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAAC-CA-A
* * * * * *
19440821 TCTTATC-CATCTGAAGTTGCAGT--AG-AG-TAGATCGCATCCAG
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACAGA-AGAAACCAA
* *
19440862 TCTTATCTCCTTGAAGTTGCAGTGGAGTAGACAGAAGAAACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAA
* * * * ** *
19440906 TCCTATCTCTCTGAAGTTGCGGTGGAGCGGA-TTAA-AACCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAAC-CA-A
* * * * *
19440950 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC---A-CATCCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAGAAGAAACCAA
19440991 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAA
* * * * * *
19441035 TCCTATCTCCCTAAAGTTACAGTGGAGCAGATTA-AA-ACCACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAGAAGA-AACCAA
* * * * * * * *
19441079 TATTATCTCTCTGAAGTTACAGT--AG-AG-TAGATCGTATCCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGA-AGAAACCAA
*
19441120 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACAGAAGAAACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAA
* * ** ** *
19441164 TCCTATCTGCCTGAAGTTGCAGTGGAGGGGA-TTAA-AACCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAAC-CA-A
* * * * ** *
19441208 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGATC-GCATCAAGC--
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAGAAGAAACCAA
*** *
19441250 -CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAA
* * *
19441293 T-TCCATCTCTCTGAAGTTGCAGCGGAGCAGA
1 TCT-TATCTCCCTGAAGTTGCAGTGGAGCAGA
19441324 TTTAAGCTAT
Statistics
Matches: 499, Mismatches: 125, Indels: 104
0.69 0.17 0.14
Matches are distributed among these distances:
39 2 0.00
40 2 0.00
41 129 0.26
42 25 0.05
43 29 0.06
44 298 0.60
45 11 0.02
46 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAA
Found at i:19440888 original size:85 final size:84
Alignment explanation
Indices: 19440559--19441239 Score: 330
Period size: 85 Copynumber: 7.9 Consensus size: 84
19440549 GGTAAAACTA
* * *
19440559 CAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGTATCCAGTCTTATCTCCCTGAAGTTGC
1 CAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGAATCCAGTCTTATCTCCCTGAAGTTGC
* **
19440624 AGTGGGACAGGCAGA--AGAAGT
66 AGT-GG--A-GCAGATTAAAACC
* * * * * * * *
19440645 CA-ATCCTATCTCCCTGAAATTGTAGT-GAAGCGGATTA-AAACCATAGATCTTATCTCTCTTAA
1 CAGATCTTATCTCTCTGAAGTTGCAGTAG-AGCAGA-TAGAATCC--AG-TCTTATCTCCCTGAA
* * * *** *
19440707 GTTGCAGTAGAG-AAAATCGCATC
61 GTTGCAGTGGAGCAGATTAAAACC
* * * * *
19440730 CA-ATCTTATCTCCCTAAAGTTGCAGTAGAGCGGACAGA-AGAAACCAATCCTATCTCCCTGAAG
1 CAGATCTTATCTCTCTGAAGTTGCAGTAGA---G-CAGATAGAATCCAGTCTTATCTCCCTGAAG
* *
19440793 TTACAGTGGAGCGGATTAAAACC
62 TTGCAGTGGAGCAGATTAAAACC
* * * *
19440816 ACAGATCTTATC-CATCTGAAGTTGCAGTAGAGTAGATCGCATCCAGTCTTATCTCCTTGAAGTT
1 -CAGATCTTATCTC-TCTGAAGTTGCAGTAGAGCAGATAGAATCCAGTCTTATCTCCCTGAAGTT
* ** *
19440880 GCAGTGGAGTAGACAGAAGAAAC
64 GCAGTGGAGCAGA-TTAA-AACC
* * * * * * *
19440903 CA-ATCCTATCTCTCTGAAGTTGCGGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGT
1 CAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TAGAATC-CAG-TCTTATCTCCCTGAAGT
* * * *
19440967 TGCAGTAGAGCAGA-TCACATC
63 TGCAGTGGAGCAGATTAAAACC
* * * * *
19440988 CAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGA-AGAAACCAATCCTATCTCCCTAAAG
1 CAGATCTTATCTCTCTGAAGTTGCAGT--AG-AG-CAGATAGAATCCAGTCTTATCTCCCTGAAG
*
19441051 TTACAGTGGAGCAGATTAAAACC
62 TTGCAGTGGAGCAGATTAAAACC
* * * * * *
19441074 ACAAATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCCAGTCTTATCTCCCTGAAGTTG
1 -CAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGAATCCAGTCTTATCTCCCTGAAGTTG
* ** *
19441139 TAGTGGAGCAGACAGAAGAAAC
65 CAGTGGAGCAGA-TTAA-AACC
* * ** * * *
19441161 CA-ATCCTATCTGC-CTGAAGTTGCAGTGGAGGGGATTAAAACCACAGATCTTATCTCTCTGAAG
1 CAGATCTTATCT-CTCTGAAGTTGCAGTAGAGCAGA-TAGAATC-CAG-TCTTATCTCCCTGAAG
* *
19441224 TTGCAGTAGAGTAGAT
62 TTGCAGTGGAGCAGAT
19441240 CGCATCAAGC
Statistics
Matches: 442, Mismatches: 114, Indels: 77
0.70 0.18 0.12
Matches are distributed among these distances:
83 2 0.00
84 8 0.02
85 240 0.54
86 34 0.08
87 26 0.06
88 126 0.29
89 6 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (84 bp):
CAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGAATCCAGTCTTATCTCCCTGAAGTTGC
AGTGGAGCAGATTAAAACC
Found at i:19441352 original size:129 final size:129
Alignment explanation
Indices: 19440551--19441325 Score: 1106
Period size: 129 Copynumber: 6.0 Consensus size: 129
19440541 AAAAGATCGG
* * * *
19440551 TAAAACTACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGTATCCAGTCTTATCTCCCT
1 TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCCAGTCTTATCTCCCT
* ** * * *
19440616 GAAGTTGCAGTGG-GACAGGCAGAAGAAGTCAATCCTATCTCCCTGAAATTGTAGTGAAGCGGAT
66 GAAGTTGCAGTGGAG-CAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGAT
* * * * *
19440680 TAAAACCATAGATCTTATCTCTCTTAAGTTGCAGTAGAGAAAATCGCATCCAATCTTATCTCCCT
1 TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCCAGTCTTATCTCCCT
* * * *
19440745 AAAGTTGCAGTAGAGCGGACAGAAGAAACCAATCCTATCTCCCTGAAGTTACAGTGGAGCGGAT
66 GAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGAT
*
19440809 TAAAACCACAGATCTTATC-CATCTGAAGTTGCAGTAGAGTAGATCGCATCCAGTCTTATCTCCT
1 TAAAACCACAGATCTTATCTC-TCTGAAGTTGCAGTAGAGTAGATCGCATCCAGTCTTATCTCCC
* * *
19440873 TGAAGTTGCAGTGGAGTAGACAGAAGAAACCAATCCTATCTCTCTGAAGTTGCGGTGGAGCGGAT
65 TGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGAT
* *
19440938 TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCCAGTCTTATCTCCCT
1 TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCCAGTCTTATCTCCCT
* * *
19441003 GAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTACAGTGGAGCAGAT
66 GAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGAT
* * * *
19441067 TAAAACCACAAATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCCAGTCTTATCTCCCT
1 TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCCAGTCTTATCTCCCT
* * *
19441132 GAAGTTGTAGTGGAGCAGACAGAAGAAACCAATCCTATCTGCCTGAAGTTGCAGTGGAGGGGAT
66 GAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGAT
* *
19441196 TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAAGCCTTATCTCCCT
1 TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCCAGTCTTATCTCCCT
*** * * * *
19441261 GAAGTTGCAGTGGAGCAGGTTGAAGATACCAATTCC-ATCTCTCTGAAGTTGCAGCGGAGCAGAT
66 GAAGTTGCAGTGGAGCAGACAGAAGAAACCAA-TCCTATCTCCCTGAAGTTGCAGTGGAGCGGAT
19441325 T
1 T
19441326 TAAGCTATTA
Statistics
Matches: 575, Mismatches: 67, Indels: 8
0.88 0.10 0.01
Matches are distributed among these distances:
128 1 0.00
129 569 0.99
130 5 0.01
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (129 bp):
TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCCAGTCTTATCTCCCT
GAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGAT
Found at i:19441364 original size:44 final size:44
Alignment explanation
Indices: 19441252--19441369 Score: 121
Period size: 44 Copynumber: 2.7 Consensus size: 44
19441242 CATCAAGCCT
*
19441252 TATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATTC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAATTC
* * * * * **
19441296 CATCTCTCTGAAGTTGCAGCGGAGCAGATTTAAGCTATTAA-TC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAATTC
* * *
19441339 ATATCTCCCTGAAGCTGCAATGGAGCGGATT
1 -TATCTCCCTGAAGTTGCAGTGGAGCAGATT
19441370 AAAATGATGA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
43 2 0.03
44 57 0.97
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAATTC
Found at i:19441600 original size:66 final size:67
Alignment explanation
Indices: 19441462--19441600 Score: 172
Period size: 66 Copynumber: 2.1 Consensus size: 67
19441452 GTAGAGCAGG
* * * * * * *
19441462 CTGAAGATACCAGTCGTATCTCTCTGAAGTTGCAGTGGAGTGAATCGAAGCAAGAAGACGCGGTG
1 CTGAAGATACAAGCCGTATCTCTCTGAAGTTGCAGTGGAATGAATCGAAGCAACAAGACACAGTA
19441527 GA
66 GA
* * * *
19441529 TTGAAGCTACAAGCCGTATCTCTCTGAAG-TGCAGTGGAATGGATCGAAGTAACAAGACACAGTA
1 CTGAAGATACAAGCCGTATCTCTCTGAAGTTGCAGTGGAATGAATCGAAGCAACAAGACACAGTA
19441593 GA
66 GA
19441595 CTGAAG
1 CTGAAG
19441601 GAGGCTACCT
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
66 35 0.58
67 25 0.42
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (67 bp):
CTGAAGATACAAGCCGTATCTCTCTGAAGTTGCAGTGGAATGAATCGAAGCAACAAGACACAGTA
GA
Found at i:19442056 original size:22 final size:20
Alignment explanation
Indices: 19442025--19442065 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
19442015 CAGAAACAAA
19442025 AAAACAACAACAAACAAATAAC
1 AAAACAACAA-AAA-AAATAAC
*
19442047 AAAACGACAAAAAAAATAA
1 AAAACAACAAAAAAAATAA
19442066 TGATTAGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 3 0.17
22 9 0.50
ACGTcount: A:0.76, C:0.17, G:0.02, T:0.05
Consensus pattern (20 bp):
AAAACAACAAAAAAAATAAC
Found at i:19443648 original size:106 final size:106
Alignment explanation
Indices: 19443463--19444000 Score: 882
Period size: 106 Copynumber: 5.1 Consensus size: 106
19443453 TTCTAATTCA
*
19443463 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTTCCCTAACGTGCTGG
1 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGG
*
19443528 GTTTTGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
66 GTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
* * * * * *
19443569 AAAATTTCAAAGCAAGGCAATATTTTGCGTTTGTAAATTCGAGAAAACGTGCCCTAAAGTGCTGG
1 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGG
*
19443634 GTTTCGATTTCTCGTTCGACGAAATAGCCAAATATCCTTTT
66 GTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
* * * * *
19443675 AAAATTTCAAAGCAAGGCAATATTTTGCGTTTGGAAATTTGAG-AAACGTGCCCTAACGTGCTGG
1 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGG
* *
19443739 GTTTCGATTTCTCGTTTGACCAAATAGCCAAATATTCTTTT
66 GTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
19443780 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGG
1 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGG
*
19443845 GTTTCTATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
66 GTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
19443886 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGG
1 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGG
* * *
19443951 GTTTTGATTTCTCGTTTGACCAAATAGCCAAATATCCTCTT
66 GTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
19443992 -AAATTTCAA
1 AAAATTTCAA
19444001 TCCATGTTAC
Statistics
Matches: 404, Mismatches: 27, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
105 106 0.26
106 298 0.74
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (106 bp):
AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGG
GTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
Found at i:19443834 original size:211 final size:212
Alignment explanation
Indices: 19443463--19444000 Score: 900
Period size: 211 Copynumber: 2.5 Consensus size: 212
19443453 TTCTAATTCA
*
19443463 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTTCCCTAACGTGCTGG
1 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGG
* *
19443528 GTTTTGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGCAAGGCAATATT
66 GTTTTGATTTCTCGTTTGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGCAAGACAATATT
* * *
19443593 TTGCGTTTGTAAATTCGAGAAAACGTGCCCTAAAGTGCTGGGTTTCGATTTCTCGTTCGACGAAA
131 TTGCGTTTGGAAAATCGAGAAAACGTGCCCTAAAGTGCTGGGTTTCGATTTCTCGTTCGACCAAA
19443658 TAGCCAAATATCCTTTT
196 TAGCCAAATATCCTTTT
* * * * *
19443675 AAAATTTCAAAGCAAGGCAATATTTTGCGTTTGGAAATTTGAG-AAACGTGCCCTAACGTGCTGG
1 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGG
* * *
19443739 GTTTCGATTTCTCGTTTGACCAAATAGCCAAATATTCTTTTAAAATTTCAAAGTAAGACAATATT
66 GTTTTGATTTCTCGTTTGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGCAAGACAATATT
* * *
19443804 TTGCGTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGGGTTTCTATTTCTCGTTCGACCAAA
131 TTGCGTTTGGAAAATCGAGAAAACGTGCCCTAAAGTGCTGGGTTTCGATTTCTCGTTCGACCAAA
19443869 TAGCCAAATATCCTTTT
196 TAGCCAAATATCCTTTT
19443886 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGG
1 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGG
*
19443951 GTTTTGATTTCTCGTTTGACCAAATAGCCAAATATCCTCTT-AAATTTCAA
66 GTTTTGATTTCTCGTTTGACCAAATAGCCAAATATCCTTTTAAAATTTCAA
19444001 TCCATGTTAC
Statistics
Matches: 300, Mismatches: 25, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
211 203 0.68
212 97 0.32
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (212 bp):
AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAAATCGAGAAAATGTGCCCTAACGTGCTGG
GTTTTGATTTCTCGTTTGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGCAAGACAATATT
TTGCGTTTGGAAAATCGAGAAAACGTGCCCTAAAGTGCTGGGTTTCGATTTCTCGTTCGACCAAA
TAGCCAAATATCCTTTT
Found at i:19445609 original size:78 final size:78
Alignment explanation
Indices: 19445494--19445947 Score: 720
Period size: 77 Copynumber: 5.9 Consensus size: 78
19445484 AAAGTTTATT
19445494 TATTTAAATTGC-AAAAAAAA-CCATAAAATTGATAAATAAAATGGCAAAAAAGTCATTACATAA
1 TATTTAAATTGCAAAAAAAAACCCATAAAATTGATAAATAAAATGGCAAAAAAGTCATTACATAA
19445557 ATACAAAGTTGAC
66 ATACAAAGTTGAC
* ** * *
19445570 TATTTAAATTGTAAAAAAACCCCCATCAAATTGATAAATAAAATGACAAAAAAGTCATTACATAA
1 TATTTAAATTGCAAAAAAAAACCCATAAAATTGATAAATAAAATGGCAAAAAAGTCATTACATAA
19445635 ATACAAAGTTGAC
66 ATACAAAGTTGAC
* *
19445648 TATTTAAATTG-GAAAAAAAACCCATAAAATTGATAAA-AAAATGGAAAAAAAGTCATTACATAA
1 TATTTAAATTGCAAAAAAAAACCCATAAAATTGATAAATAAAATGGCAAAAAAGTCATTACATAA
19445711 ATACAAAGTTGAC
66 ATACAAAGTTGAC
*
19445724 TATTTAAATTGCAAAAAAAAACCCATAAAATTGATAAA-AAAATGGAAAAAAAGTCATTACATAA
1 TATTTAAATTGCAAAAAAAAACCCATAAAATTGATAAATAAAATGGCAAAAAAGTCATTACATAA
19445788 ATACAAAGTTGAC
66 ATACAAAGTTGAC
* *
19445801 TATTTAAATTGCAAAAAAAAACCCATAAAATTGATAAATAAAATGGCAACAAATTCATTACATAA
1 TATTTAAATTGCAAAAAAAAACCCATAAAATTGATAAATAAAATGGCAAAAAAGTCATTACATAA
** *
19445866 ATATGACGTTGAC
66 ATACAAAGTTGAC
* * *
19445879 TATTTAAATTGCAAAAAAAAAACCCATAAAATTGATAAATAAAATGACAAAAAATTTATTACATA
1 TATTTAAATTGC-AAAAAAAAACCCATAAAATTGATAAATAAAATGGCAAAAAAGTCATTACATA
19445944 AATA
65 AATA
19445948 TGAAGTTATT
Statistics
Matches: 352, Mismatches: 21, Indels: 7
0.93 0.06 0.02
Matches are distributed among these distances:
76 59 0.17
77 130 0.37
78 110 0.31
79 53 0.15
ACGTcount: A:0.55, C:0.11, G:0.08, T:0.25
Consensus pattern (78 bp):
TATTTAAATTGCAAAAAAAAACCCATAAAATTGATAAATAAAATGGCAAAAAAGTCATTACATAA
ATACAAAGTTGAC
Found at i:19446172 original size:12 final size:12
Alignment explanation
Indices: 19446148--19446204 Score: 52
Period size: 12 Copynumber: 5.0 Consensus size: 12
19446138 AGCCGATAGG
19446148 AGTGGAGTACGGC
1 AGTGGA-TACGGC
19446161 AGTGGATACGGC
1 AGTGGATACGGC
*
19446173 CG-GG--A-GG-
1 AGTGGATACGGC
19446180 AGTGGAGTACGGC
1 AGTGGA-TACGGC
19446193 AGTGGATACGGC
1 AGTGGATACGGC
19446205 CGGGAGGAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
7 1 0.03
8 4 0.11
9 1 0.03
11 3 0.08
12 15 0.42
13 12 0.33
ACGTcount: A:0.23, C:0.16, G:0.47, T:0.14
Consensus pattern (12 bp):
AGTGGATACGGC
Found at i:19446184 original size:32 final size:32
Alignment explanation
Indices: 19446145--19446254 Score: 175
Period size: 32 Copynumber: 3.4 Consensus size: 32
19446135 TTGAGCCGAT
19446145 AGGAGTGGAGTACGGCAGTGGATACGGCCGGG
1 AGGAGTGGAGTACGGCAGTGGATACGGCCGGG
19446177 AGGAGTGGAGTACGGCAGTGGATACGGCCGGG
1 AGGAGTGGAGTACGGCAGTGGATACGGCCGGG
* *
19446209 AGGAGTGGAGTACGGCAGTGTATACGGGCCGGA
1 AGGAGTGGAGTACGGCAGTGGATAC-GGCCGGG
* *
19446242 AGGATTGAAGTAC
1 AGGAGTGGAGTAC
19446255 TAAGGTGGAT
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
32 56 0.77
33 17 0.23
ACGTcount: A:0.25, C:0.15, G:0.46, T:0.15
Consensus pattern (32 bp):
AGGAGTGGAGTACGGCAGTGGATACGGCCGGG
Found at i:19446185 original size:19 final size:20
Alignment explanation
Indices: 19446161--19446224 Score: 65
Period size: 19 Copynumber: 3.6 Consensus size: 20
19446151 GGAGTACGGC
19446161 AGTGGA-TACGGCCGGGAGG
1 AGTGGAGTACGGCCGGGAGG
19446180 AGTGGAGTACGG-C------
1 AGTGGAGTACGGCCGGGAGG
19446193 AGTGGA-TACGGCCGGGAGG
1 AGTGGAGTACGGCCGGGAGG
19446212 AGTGGAGTACGGC
1 AGTGGAGTACGGC
19446225 AGTGTATACG
Statistics
Matches: 36, Mismatches: 0, Indels: 17
0.68 0.00 0.32
Matches are distributed among these distances:
12 5 0.14
13 7 0.19
19 13 0.36
20 11 0.31
ACGTcount: A:0.22, C:0.16, G:0.50, T:0.12
Consensus pattern (20 bp):
AGTGGAGTACGGCCGGGAGG
Found at i:19447097 original size:132 final size:132
Alignment explanation
Indices: 19446860--19447121 Score: 488
Period size: 132 Copynumber: 2.0 Consensus size: 132
19446850 CTGAAACAAA
*
19446860 ATACGACATCCAAATGAACTGCACAGTTAATAACATTATTATATTAACACGGGTTGAGTGAGATA
1 ATACGACATCCAAATGAACTGCACAGTTAATAACATTATTATATTAACACGGATTGAGTGAGATA
19446925 AAATAATAAAATTAAGTTGATATTGGAAAAACTTACCCCCTCTCCAACATGATTCTCAATCATCA
66 AAATAATAAAATTAAGTTGATATTGGAAAAACTTACCCCCTCTCCAACATGATTCTCAATCATCA
19446990 TG
131 TG
* *
19446992 ATACGACATTCAAATGAACTGCACAGTTAATAACATTGTTATATTAACACGGATTGAGTGAGATA
1 ATACGACATCCAAATGAACTGCACAGTTAATAACATTATTATATTAACACGGATTGAGTGAGATA
*
19447057 AAATAATAAAATTAAGTTGATATTGGAAAAACTTACCCCCTCTCCAACATGATTCTCGATCATCA
66 AAATAATAAAATTAAGTTGATATTGGAAAAACTTACCCCCTCTCCAACATGATTCTCAATCATCA
19447122 AACGGTATAT
Statistics
Matches: 126, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 126 1.00
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (132 bp):
ATACGACATCCAAATGAACTGCACAGTTAATAACATTATTATATTAACACGGATTGAGTGAGATA
AAATAATAAAATTAAGTTGATATTGGAAAAACTTACCCCCTCTCCAACATGATTCTCAATCATCA
TG
Found at i:19448419 original size:18 final size:18
Alignment explanation
Indices: 19448393--19448435 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
19448383 ACGTTTTAAT
* *
19448393 AAATCAATAAAAATTGTC
1 AAATAAATAAAAATTATC
19448411 AAATAAATAAAAATTATC
1 AAATAAATAAAAATTATC
19448429 AAATAAA
1 AAATAAA
19448436 ATTACATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.65, C:0.07, G:0.02, T:0.26
Consensus pattern (18 bp):
AAATAAATAAAAATTATC
Found at i:19448593 original size:105 final size:103
Alignment explanation
Indices: 19448459--19448841 Score: 526
Period size: 101 Copynumber: 3.7 Consensus size: 103
19448449 AAAATTACAT
** *
19448459 TAAAAAAATCACAAAGCAC-TAAACTAAACACTAACAATTTATATAATCTAATCATAAATTACTA
1 TAAAAAAATCACAAAATACAT-AACTAAACACTAACAATTTATATAACCTAATCATAAATTACTA
***
19448523 ACAAAATAACTATAAAATTATTTTTTTTAAAATACATTAC
65 ACAAAATAACTATAAAATTA-TTTTAAAAAAATACATTAC
* *
19448563 TAAAAAAATTACAAAAATACATAACTAAACACTAACAATTTATATAACCTAATAATAAATTACTA
1 TAAAAAAATCAC-AAAATACATAACTAAACACTAACAATTTATATAACCTAATCATAAATTACTA
19448628 ACAAAATAACTATAAAATTA-TTTAAAAAAATACATTAC
65 ACAAAATAACTATAAAATTATTTTAAAAAAATACATTAC
*
19448666 T-AAAAAATCACAAAATACATAACTAAACACTAACAATTTATATAACCTAAGCATAAATTACTAA
1 TAAAAAAATCACAAAATACATAACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAA
*
19448730 CAAAATAACTATAAAATTATTTTAAAAAAATTAAATTAC
66 CAAAATAACTATAAAATTATTTTAAAAAAA-TACATTAC
* * * * *
19448769 TAAAAAAATCACAAAA-CCCTATACTAAACACTAACAA--TGTGTAATCTAATCCCATAAATTAC
1 TAAAAAAATCACAAAATACATA-ACTAAACACTAACAATTTATATAACCTAAT--CATAAATTAC
19448831 TAACAAAATAA
63 TAACAAAATAA
19448842 ATAACTATAA
Statistics
Matches: 253, Mismatches: 18, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
101 70 0.28
102 28 0.11
103 27 0.11
104 61 0.24
105 66 0.26
106 1 0.00
ACGTcount: A:0.56, C:0.15, G:0.01, T:0.28
Consensus pattern (103 bp):
TAAAAAAATCACAAAATACATAACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAA
CAAAATAACTATAAAATTATTTTAAAAAAATACATTAC
Found at i:19448675 original size:206 final size:202
Alignment explanation
Indices: 19448448--19448841 Score: 535
Period size: 206 Copynumber: 1.9 Consensus size: 202
19448438 TACATTATAT
* * * *
19448448 AAAAATTACATTAAAAAAATCACAAAGCAC-TAAACTAAACACTAACAATTTATATAATCTAATC
1 AAAAAATACATTAAAAAAATCACAAAACACAT-AACTAAACACTAACAATTTATATAACCTAAGC
*** * *
19448512 ATAAATTACTAACAAAATAACTATAAAATTATTTTTTTTAAAA-TACATTACTAAAAAAATTACA
65 ATAAATTACTAACAAAATAACTATAAAATTA-TTTTAAAAAAATTAAATTACTAAAAAAATCAC-
19448576 AAAATACATA-ACTAAACACTAACAATTTATATAACCTAAT-AATAAATTACTAACAAAATAACT
128 AAAA-ACATATACTAAACACTAACAA--TATATAACCTAATCAATAAATTACTAACAAAATAACT
19448639 ATAAAATTATTTA
190 ATAAAATTATTTA
*
19448652 AAAAAATACATTACTAAAAAATCACAAAATACATAACTAAACACTAACAATTTATATAACCTAAG
1 AAAAAATACATTA--AAAAAATCACAAAACACATAACTAAACACTAACAATTTATATAACCTAAG
19448717 CATAAATTACTAACAAAATAACTATAAAATTATTTTAAAAAAATTAAATTACTAAAAAAATCACA
64 CATAAATTACTAACAAAATAACTATAAAATTATTTTAAAAAAATTAAATTACTAAAAAAATCACA
* * * * * *
19448782 AAACCCTATACTAAACACTAACAATGTGTAATCTAATCCCATAAATTACTAACAAAATAA
129 AAAACATATACTAAACACTAACAATATATAACCTAAT-CAATAAATTACTAACAAAATAA
19448842 ATAACTATAA
Statistics
Matches: 167, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
203 10 0.06
204 15 0.09
205 47 0.28
206 94 0.56
207 1 0.01
ACGTcount: A:0.56, C:0.15, G:0.01, T:0.28
Consensus pattern (202 bp):
AAAAAATACATTAAAAAAATCACAAAACACATAACTAAACACTAACAATTTATATAACCTAAGCA
TAAATTACTAACAAAATAACTATAAAATTATTTTAAAAAAATTAAATTACTAAAAAAATCACAAA
AACATATACTAAACACTAACAATATATAACCTAATCAATAAATTACTAACAAAATAACTATAAAA
TTATTTA
Found at i:19448701 original size:23 final size:23
Alignment explanation
Indices: 19448654--19448701 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
19448644 ATTATTTAAA
* *
19448654 AAAATACATTACTAAAAAATCAC
1 AAAATACATAACTAAAAAATAAC
* *
19448677 AAAATACATAACTAAACACTAAC
1 AAAATACATAACTAAAAAATAAC
19448700 AA
1 AA
19448702 TTTATATAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.62, C:0.19, G:0.00, T:0.19
Consensus pattern (23 bp):
AAAATACATAACTAAAAAATAAC
Found at i:19449111 original size:60 final size:60
Alignment explanation
Indices: 19449039--19449157 Score: 184
Period size: 60 Copynumber: 2.0 Consensus size: 60
19449029 ATACTAAACT
* * * *
19449039 AAACACAACAATTTATAACATAATCCTAAATTACTAATAAATTAATTTTTAAATTATTAC
1 AAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAAATTTAAAATAATTAC
* *
19449099 AAACACAACAATTTGTAACATAATCTTAAATTACTAACAAATTAAATTTAAAATAATTA
1 AAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAAATTTAAAATAATTA
19449158 AAAAAATTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.52, C:0.13, G:0.01, T:0.34
Consensus pattern (60 bp):
AAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAAATTTAAAATAATTAC
Found at i:19452872 original size:18 final size:18
Alignment explanation
Indices: 19452826--19452872 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
19452816 ATTAGTCTAA
*
19452826 TATTTGATTTA-TTATTT
1 TATTTGTTTTATTTATTT
*
19452843 TATTT-TAGTTATTTATTT
1 TATTTGT-TTTATTTATTT
19452861 TATTTGTTTTAT
1 TATTTGTTTTAT
19452873 CTGACTTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
17 8 0.33
18 15 0.62
19 1 0.04
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.72
Consensus pattern (18 bp):
TATTTGTTTTATTTATTT
Found at i:19453270 original size:16 final size:16
Alignment explanation
Indices: 19453225--19453272 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
19453215 AAAAGTGATC
19453225 AAAAAAGTATAAAAAAAT
1 AAAAAA-TA-AAAAAAAT
* **
19453243 AAAATACGAAAAAAAT
1 AAAAAATAAAAAAAAT
19453259 AAAAAATAAAAAAA
1 AAAAAATAAAAAAA
19453273 TTTCGTAGGT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
16 19 0.79
18 5 0.21
ACGTcount: A:0.81, C:0.02, G:0.04, T:0.12
Consensus pattern (16 bp):
AAAAAATAAAAAAAAT
Found at i:19459315 original size:14 final size:13
Alignment explanation
Indices: 19459281--19459306 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19459271 CAAATGGGTA
19459281 GTTTTCTGCAAAT
1 GTTTTCTGCAAAT
19459294 GTTTTCTGCAAAT
1 GTTTTCTGCAAAT
19459307 CAGTTTCTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (13 bp):
GTTTTCTGCAAAT
Found at i:19460879 original size:34 final size:35
Alignment explanation
Indices: 19460823--19460889 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
19460813 CAAACACCAG
* *
19460823 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
19460858 AAAACATTTTTCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
19460890 CATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:19460881 original size:14 final size:14
Alignment explanation
Indices: 19460858--19460897 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
19460848 ACAGAAAAGT
*
19460858 AAAACATTTTTCAG
1 AAAACATTTTACAG
* *
19460872 AAATCATTTTACGG
1 AAAACATTTTACAG
19460886 AAAACATTTTAC
1 AAAACATTTTAC
19460898 TGTCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.35
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:19468907 original size:19 final size:19
Alignment explanation
Indices: 19468883--19468926 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
19468873 AAATGAATGG
* *
19468883 ATGATATGATAATATTTTA
1 ATGATATGATAATATATCA
*
19468902 ATGATATGATAGTATATCA
1 ATGATATGATAATATATCA
19468921 ATGATA
1 ATGATA
19468927 CCATGAATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.41
Consensus pattern (19 bp):
ATGATATGATAATATATCA
Found at i:19481298 original size:7 final size:8
Alignment explanation
Indices: 19481270--19481296 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
19481260 ATTTATTTTT
19481270 AAAATAAA
1 AAAATAAA
19481278 AAAATAAA
1 AAAATAAA
19481286 AAAATAAA
1 AAAATAAA
19481294 AAA
1 AAA
19481297 TATATTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAATAAA
Found at i:19488396 original size:11 final size:11
Alignment explanation
Indices: 19488382--19488407 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
19488372 AATAAATAAT
19488382 ATATACACGTC
1 ATATACACGTC
19488393 ATATACACGTC
1 ATATACACGTC
19488404 ATAT
1 ATAT
19488408 TGTATGCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (11 bp):
ATATACACGTC
Found at i:19491226 original size:4 final size:4
Alignment explanation
Indices: 19491219--19491245 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
19491209 AAAAAGGGGG
19491219 GGCA GGCA GGCA GGCA GGCA GGCA GGC
1 GGCA GGCA GGCA GGCA GGCA GGCA GGC
19491246 TGGCTATCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.52, T:0.00
Consensus pattern (4 bp):
GGCA
Found at i:19495900 original size:22 final size:22
Alignment explanation
Indices: 19495852--19495917 Score: 68
Period size: 22 Copynumber: 3.0 Consensus size: 22
19495842 AATGGTAAGG
19495852 ATTAATTTCAATTTTT-TAATATT
1 ATTAATTTC-ATTTTTATAAT-TT
19495875 ATT-ATTTCATTTTTATAATTT
1 ATTAATTTCATTTTTATAATTT
19495896 AATTAATATT--TTTTTATAATTT
1 -ATTAAT-TTCATTTTTATAATTT
19495918 TTTATAACAG
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
21 8 0.21
22 24 0.62
23 5 0.13
24 2 0.05
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (22 bp):
ATTAATTTCATTTTTATAATTT
Found at i:19499038 original size:24 final size:23
Alignment explanation
Indices: 19499000--19499044 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
19498990 GAAAACTTAA
19499000 AATAATTATGATAAATTTAAAAT
1 AATAATTATGATAAATTTAAAAT
*
19499023 AATAATATGTGATAAATTTAAA
1 AATAAT-TATGATAAATTTAAA
19499045 CAACATTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.38
Consensus pattern (23 bp):
AATAATTATGATAAATTTAAAAT
Found at i:19500573 original size:44 final size:43
Alignment explanation
Indices: 19500452--19500579 Score: 132
Period size: 44 Copynumber: 2.9 Consensus size: 43
19500442 AGGATTCAAA
* * *
19500452 TTCAATCTGCTCTACTGCAACCTCAGGGAGATAAGATTTGCTTC
1 TTCAGTCTGCTCCACTGCAACCTCAGGG-GATAAGACTTGCTTC
* ** * *
19500496 TTCAGTCTGCCCCACTGTGACTTCAAGGGGATAAGACTTG-TTT
1 TTCAGTCTGCTCCACTGCAACCTC-AGGGGATAAGACTTGCTTC
*
19500539 TCTCAGTCTGCTCCACTGCAACCTCAGGGTGATAAGGCTTG
1 T-TCAGTCTGCTCCACTGCAACCTCAGGG-GATAAGACTTG
19500580 ATGTGATCTA
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
43 7 0.10
44 57 0.84
45 4 0.06
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (43 bp):
TTCAGTCTGCTCCACTGCAACCTCAGGGGATAAGACTTGCTTC
Found at i:19500908 original size:87 final size:87
Alignment explanation
Indices: 19500669--19501104 Score: 669
Period size: 87 Copynumber: 5.0 Consensus size: 87
19500659 ACTTATAATC
* * *
19500669 TTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
19500734 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
*
19500756 TT-GTATCTGCTTCGCT-TTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCA
1 TTCG-ATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACA
*
19500819 ACCGATGGAGGCAAGGCTTTATT
65 ACCGATGGAGGCAAGGCTTTGTT
** * * * *
19500842 TTTTATCTGCTTTGCTGTTAACGTAGGAAGGCAAGATCTGCTATCTTTAACCAGCTGCATTACAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
*
19500907 CCGATGGAGGCAAGGCTTCGTT
66 CCGATGGAGGCAAGGCTTTGTT
*
19500929 TTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
19500994 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* * * * *
19501016 TTCGGTCTGCTTCGCTGCTAACGCAGGAAGGCAAAATCTGTTATCTTTAATCAGCTCCAACTACA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCC-ACTACA
*
19501081 ACCGATAGAGGCAAGGCTTTGTT
65 ACCGATGGAGGCAAGGCTTTGTT
19501104 T
1 T
19501105 CCAATTTTCA
Statistics
Matches: 319, Mismatches: 26, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
86 82 0.26
87 208 0.65
88 29 0.09
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (87 bp):
TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
CCGATGGAGGCAAGGCTTTGTT
Found at i:19502849 original size:8 final size:7
Alignment explanation
Indices: 19502812--19502848 Score: 53
Period size: 6 Copynumber: 5.7 Consensus size: 7
19502802 TTCTTTTCTT
19502812 TTTTTG-
1 TTTTTGA
19502818 TTTTTGA
1 TTTTTGA
19502825 -TTTTG-
1 TTTTTGA
19502830 TTTTTGA
1 TTTTTGA
19502837 TTTTTGA
1 TTTTTGA
19502844 TTTTT
1 TTTTT
19502849 TTCTTCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
6 16 0.57
7 12 0.43
ACGTcount: A:0.08, C:0.00, G:0.14, T:0.78
Consensus pattern (7 bp):
TTTTTGA
Found at i:19502860 original size:19 final size:19
Alignment explanation
Indices: 19502818--19502859 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
19502808 TCTTTTTTTG
*
19502818 TTTTTGATTTTGTTTTTGA
1 TTTTTGATTTTGTTTTTCA
19502837 TTTTTGATTTT-TTTCTTC-
1 TTTTTGATTTTGTTT-TTCA
19502855 TTTTT
1 TTTTT
19502860 TTTTTTGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.07, C:0.05, G:0.10, T:0.79
Consensus pattern (19 bp):
TTTTTGATTTTGTTTTTCA
Found at i:19505659 original size:37 final size:37
Alignment explanation
Indices: 19505598--19505743 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
19505588 TACGTATGAT
* *
19505598 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
19505633 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
19505670 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
19505707 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
19505744 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:19505760 original size:46 final size:46
Alignment explanation
Indices: 19505707--19505975 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
19505697 TAAGTGTAGC
* **
19505707 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
19505753 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
19505799 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
19505851 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
19505897 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
19505949 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
19505976 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:19505826 original size:52 final size:52
Alignment explanation
Indices: 19505750--19505969 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
19505740 TAGCTAAAGC
* *
19505750 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
19505803 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
19505855 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
19505901 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
19505953 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
19505970 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:19505872 original size:98 final size:98
Alignment explanation
Indices: 19505707--19505975 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
19505697 TAAGTGTAGC
* * *
19505707 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
19505772 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
19505806 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
19505871 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
19505904 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
19505969 GATCAGA
66 GATCAGA
19505976 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:19508422 original size:39 final size:39
Alignment explanation
Indices: 19508368--19508445 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
19508358 TCGTGTTTGG
* *
19508368 ATTGATTTGATTCTCAATCTTTTGATTTCTTTCCATTAC
1 ATTGATTTGATTCTCAATCCTTTGAGTTCTTTCCATTAC
19508407 ATTGATTTGATTCTCAATCCTTTGAGTTCTTTCCATTAC
1 ATTGATTTGATTCTCAATCCTTTGAGTTCTTTCCATTAC
19508446 TGTTTTGCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.21, C:0.19, G:0.09, T:0.51
Consensus pattern (39 bp):
ATTGATTTGATTCTCAATCCTTTGAGTTCTTTCCATTAC
Found at i:19508969 original size:16 final size:15
Alignment explanation
Indices: 19508948--19508981 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
19508938 TAATCTTTCA
19508948 CTTTCCTTCCAACTTT
1 CTTTCCTTCCAA-TTT
*
19508964 CTTTCCTTCTAATTT
1 CTTTCCTTCCAATTT
19508979 CTT
1 CTT
19508982 ATCTCTTGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.12, C:0.32, G:0.00, T:0.56
Consensus pattern (15 bp):
CTTTCCTTCCAATTT
Found at i:19510172 original size:21 final size:22
Alignment explanation
Indices: 19510141--19510185 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
19510131 ATTTAAAAAA
19510141 AATATTTTTTATTAAAATTTTG
1 AATATTTTTTATTAAAATTTTG
**
19510163 AATA-TTTTTATTTGAATTTTG
1 AATATTTTTTATTAAAATTTTG
19510184 AA
1 AA
19510186 AAAAAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.58
Consensus pattern (22 bp):
AATATTTTTTATTAAAATTTTG
Found at i:19517172 original size:156 final size:156
Alignment explanation
Indices: 19517010--19517308 Score: 422
Period size: 156 Copynumber: 1.9 Consensus size: 156
19517000 AACTAGACAC
* * **
19517010 TTTTTTGTACAGTTGGTTCTGAAAAAATAATTTTGAGAAGATGGTTCAGAAA-AGGTATCCTGAG
1 TTTTTTGTACAGTTGATTCTGAAAAAATAATTTTGAGAAGATGGTTCAGAAAGA-ATATCCCAAG
* * * * *
19517074 ATTTCCGA-GAAATCTAATAGTTGGGGTTGAAAAACGCTTCAAGCAGGATGCACAATCAGGAAAA
65 A-TTCAGAGGAAATCTAATAATTAGGGTTGAAAAACACTTCAAGCAGGATGCACAATCAGCAAAA
19517138 ATACTGAAAAAGCTCTCAATTGGACGTT
129 ATACTGAAAAAGCTCTCAATTGGACGTT
*
19517166 TTTTTTGTACAGTTGATTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAGAATATCCCAAGA
1 TTTTTTGTACAGTTGATTCTGAAAAAATAATTTTGAGAAGATGGTTCAGAAAGAATATCCCAAGA
* * * ** *
19517231 TTCATAGGAAATCTGATAATTAGGGTTGAAAAATACTTCAAGCAGGATGCACTGTCAGCAAAAGT
66 TTCAGAGGAAATCTAATAATTAGGGTTGAAAAACACTTCAAGCAGGATGCACAATCAGCAAAAAT
19517296 ACTGAAAAAGCTC
131 ACTGAAAAAGCTC
19517309 CCAGCTGGAC
Statistics
Matches: 125, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
155 4 0.03
156 120 0.96
157 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (156 bp):
TTTTTTGTACAGTTGATTCTGAAAAAATAATTTTGAGAAGATGGTTCAGAAAGAATATCCCAAGA
TTCAGAGGAAATCTAATAATTAGGGTTGAAAAACACTTCAAGCAGGATGCACAATCAGCAAAAAT
ACTGAAAAAGCTCTCAATTGGACGTT
Found at i:19519041 original size:59 final size:59
Alignment explanation
Indices: 19518933--19519107 Score: 244
Period size: 59 Copynumber: 3.0 Consensus size: 59
19518923 AAATTGAAAT
* * *
19518933 AACTCCTAATTTATTAAATGAAACAATGA-AAAAATAATTTGTATGAAAATATTCAAAAG
1 AACTTCTATTTTATTAAATGAAACAAT-ATAAAAATAATTTGTATAAAAATATTCAAAAG
* * *
19518992 AACTTCTATTTTAGTAAATGAAATAATATAAAAATAATTTGTACAAAAATATTCAAAAG
1 AACTTCTATTTTATTAAATGAAACAATATAAAAATAATTTGTATAAAAATATTCAAAAG
* * * *
19519051 AACTTCTATTTTATTAAATGAAACAATATAAAAACAATATCTATAAATATATTCAAA
1 AACTTCTATTTTATTAAATGAAACAATATAAAAATAATTTGTATAAAAATATTCAAA
19519108 TATAAATCAA
Statistics
Matches: 102, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
58 1 0.01
59 101 0.99
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.33
Consensus pattern (59 bp):
AACTTCTATTTTATTAAATGAAACAATATAAAAATAATTTGTATAAAAATATTCAAAAG
Found at i:19521347 original size:37 final size:37
Alignment explanation
Indices: 19521286--19521431 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
19521276 TACGTATGAT
* *
19521286 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
19521321 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
19521358 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
19521395 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
19521432 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:19521448 original size:46 final size:46
Alignment explanation
Indices: 19521395--19521663 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
19521385 TAAGTGTAGC
* **
19521395 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
19521441 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
19521487 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
19521539 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
19521585 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
19521637 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
19521664 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:19521514 original size:52 final size:52
Alignment explanation
Indices: 19521438--19521657 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
19521428 TAGCTAAAGC
* *
19521438 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
19521491 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
19521543 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
19521589 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
19521641 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
19521658 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:19521560 original size:98 final size:98
Alignment explanation
Indices: 19521395--19521663 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
19521385 TAAGTGTAGC
* * *
19521395 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
19521460 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
19521494 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
19521559 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
19521592 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
19521657 GATCAGA
66 GATCAGA
19521664 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:19530899 original size:132 final size:132
Alignment explanation
Indices: 19530696--19531502 Score: 1296
Period size: 132 Copynumber: 6.1 Consensus size: 132
19530686 TCGAAGACTC
* * *
19530696 TAGATCTTATCTCCCTAAGCAGTAGCGGAGTAGATCGAAGATGGCTGATTTTACCTCCCTGTGGT
1 TAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGT
* *
19530761 TCCAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTTAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGAT
19530826 TT
131 TT
19530828 TAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGT
1 TAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGT
*
19530893 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTTAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGAT
19530958 TT
131 TT
19530960 TAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGT
1 TAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGT
* * *
19531025 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTTCCTGGGCAACAATGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGAT
19531090 TT
131 TT
*
19531092 CAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGT
1 TAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGT
* * *
19531157 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTTCCTGGGCAACAATGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGAT
19531222 TT
131 TT
* * * * * *
19531224 CAGATCTTATCTCCCTAAGCAGTAGCGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTATAGT
1 TAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGT
* * *
19531289 TACAGTGGAGTACATTGAAACCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTAAAAAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGAT
19531354 TT
131 TT
* * * *
19531356 CAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGAT-GAAGATAGCGGATTTTACCTCCCTGTGGT
1 TAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGT
* * *
19531420 TACAGCGGAGTACATTGAATCCAGTAATTCTACTTCCCTAGG-CAGCAGTGGAATAGATTGAAGA
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCT-GGACAACAGTGGAATAGATTGAAGA
*
19531484 TTG
130 TTT
*
19531487 T-GAATCCTATCTCCCT
1 TAG-ATCTTATCTCCCT
19531503 TGTCAGCAAT
Statistics
Matches: 639, Mismatches: 34, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
130 1 0.00
131 94 0.15
132 544 0.85
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (132 bp):
TAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGT
TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGAT
TT
Found at i:19531510 original size:44 final size:44
Alignment explanation
Indices: 19531462--19531569 Score: 173
Period size: 44 Copynumber: 2.5 Consensus size: 44
19531452 CTTCCCTAGG
* *
19531462 CAGCAGTGGAATAGATTGAAGATTGTGAATCCTATCTCCCTT-GT
1 CAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCT-CCTTGGT
*
19531506 CAGCAATGGAATAGGTTGAAGATTGAGAATCCTATCTCCTTGGT
1 CAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCTCCTTGGT
19531550 CAGCAGTGGAATAGGTTGAA
1 CAGCAGTGGAATAGGTTGAA
19531570 AGTAAACAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
43 4 0.07
44 55 0.93
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (44 bp):
CAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCTCCTTGGT
Found at i:19532189 original size:20 final size:20
Alignment explanation
Indices: 19532164--19532267 Score: 95
Period size: 20 Copynumber: 5.3 Consensus size: 20
19532154 TGGAAAGAAC
19532164 TCAATGGATTGAGAATCAAA
1 TCAATGGATTGAGAATCAAA
* * **
19532184 TCAATGTAATG-GAAAGAAA
1 TCAATGGATTGAGAATCAAA
*
19532203 TCAAAGGATTGAGAATCAAA
1 TCAATGGATTGAGAATCAAA
* * **
19532223 TCAATGTAATG-GAAAGAAA
1 TCAATGGATTGAGAATCAAA
**
19532242 TCAAAAGATTGAGAATCAAA
1 TCAATGGATTGAGAATCAAA
19532262 TCAATG
1 TCAATG
19532268 TAAACAAGAT
Statistics
Matches: 60, Mismatches: 22, Indels: 4
0.70 0.26 0.05
Matches are distributed among these distances:
19 27 0.45
20 33 0.55
ACGTcount: A:0.50, C:0.09, G:0.19, T:0.22
Consensus pattern (20 bp):
TCAATGGATTGAGAATCAAA
Found at i:19532212 original size:39 final size:39
Alignment explanation
Indices: 19532150--19532270 Score: 215
Period size: 39 Copynumber: 3.1 Consensus size: 39
19532140 AAGCAAAACA
* *
19532150 GTAATGGAAAGAACTCAATGGATTGAGAATCAAATCAAT
1 GTAATGGAAAGAAATCAAAGGATTGAGAATCAAATCAAT
19532189 GTAATGGAAAGAAATCAAAGGATTGAGAATCAAATCAAT
1 GTAATGGAAAGAAATCAAAGGATTGAGAATCAAATCAAT
*
19532228 GTAATGGAAAGAAATCAAAAGATTGAGAATCAAATCAAT
1 GTAATGGAAAGAAATCAAAGGATTGAGAATCAAATCAAT
19532267 GTAA
1 GTAA
19532271 ACAAGATTTT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.50, C:0.08, G:0.20, T:0.21
Consensus pattern (39 bp):
GTAATGGAAAGAAATCAAAGGATTGAGAATCAAATCAAT
Found at i:19533049 original size:18 final size:18
Alignment explanation
Indices: 19533027--19533069 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
19533017 AATTTATATA
19533027 CATAATCATTATTATTTT
1 CATAATCATTATTATTTT
*
19533045 TATAATCATTATTATTTT
1 CATAATCATTATTATTTT
19533063 CATAATC
1 CATAATC
19533070 TATATATACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (18 bp):
CATAATCATTATTATTTT
Found at i:19534824 original size:16 final size:16
Alignment explanation
Indices: 19534803--19534837 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
19534793 TTAAAATGAA
19534803 TGAATAAA-GTCTTATG
1 TGAATAAATGTCTTA-G
19534819 TGAATAAATGTCTTAG
1 TGAATAAATGTCTTAG
19534835 TGA
1 TGA
19534838 GCTCAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (16 bp):
TGAATAAATGTCTTAG
Found at i:19535987 original size:20 final size:23
Alignment explanation
Indices: 19535962--19536006 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
19535952 AATTTTGTTC
19535962 AACA-TTAATTT-TTAT-TCAAA
1 AACATTTAATTTGTTATATCAAA
19535982 AACATTTTAATTTGTTATATCAAA
1 AACA-TTTAATTTGTTATATCAAA
19536006 A
1 A
19536007 CCTATTATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 4 0.19
22 7 0.33
23 4 0.19
24 6 0.29
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.44
Consensus pattern (23 bp):
AACATTTAATTTGTTATATCAAA
Found at i:19538259 original size:35 final size:36
Alignment explanation
Indices: 19538155--19538288 Score: 155
Period size: 35 Copynumber: 3.8 Consensus size: 36
19538145 ATCAGTCCAA
*
19538155 CCAAAACACACTAGATGCTCACAAGAGCCAATCCCT
1 CCAAAACACACCAGATGCTCACAAGAGCCAATCCCT
* * * *
19538191 CTAAGACAGACCAGATGCTCACACGAGCCAATCCCT
1 CCAAAACACACCAGATGCTCACAAGAGCCAATCCCT
* * * *
19538227 CCAAAACAAACCA-ATGCTCATAAGAGCAAATCCTT
1 CCAAAACACACCAGATGCTCACAAGAGCCAATCCCT
* *
19538262 TCAAAACACACCA-ATGCTCATAAGAGC
1 CCAAAACACACCAGATGCTCACAAGAGC
19538289 TAGTCTAACC
Statistics
Matches: 84, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
35 43 0.51
36 41 0.49
ACGTcount: A:0.40, C:0.33, G:0.12, T:0.15
Consensus pattern (36 bp):
CCAAAACACACCAGATGCTCACAAGAGCCAATCCCT
Found at i:19538304 original size:35 final size:35
Alignment explanation
Indices: 19538154--19538310 Score: 113
Period size: 35 Copynumber: 4.4 Consensus size: 35
19538144 CATCAGTCCA
* * *
19538154 ACCAAAACACACTAGATGCTCACAAGAGCCAATCCCT
1 ACCAAAACACACCA-ATGCTCATAAGAGCAAAT-CCT
* * * * * *
19538191 -CTAAGACAGACCAGATGCTCACACGAGCCAATCCCT
1 ACCAAAACACACCA-ATGCTCATAAGAGCAAAT-CCT
*
19538227 -CCAAAACAAACCAATGCTCATAAGAGCAAATCCT
1 ACCAAAACACACCAATGCTCATAAGAGCAAATCCT
** * *
19538261 TTCAAAACACACCAATGCTCATAAGAGCTAGT-CT
1 ACCAAAACACACCAATGCTCATAAGAGCAAATCCT
*
19538295 AACCGAAACACACCAA
1 -ACCAAAACACACCAA
19538311 ATAGAGAGTA
Statistics
Matches: 100, Mismatches: 18, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
34 5 0.05
35 54 0.54
36 41 0.41
ACGTcount: A:0.41, C:0.32, G:0.11, T:0.15
Consensus pattern (35 bp):
ACCAAAACACACCAATGCTCATAAGAGCAAATCCT
Found at i:19543928 original size:46 final size:45
Alignment explanation
Indices: 19543854--19543992 Score: 188
Period size: 46 Copynumber: 3.0 Consensus size: 45
19543844 CATGGAAAAG
*
19543854 TGTGGAATGTAGGTATGGTAATTTAGTAAAGAAAACCATACTGAGT
1 TGTGGAAAGTAGGTATGGT-ATTTAGTAAAGAAAACCATACTGAGT
* * *
19543900 TGTGGAACGCAGGTATGGTATTTCAGTAACGAAAACCATACTGAGT
1 TGTGGAAAGTAGGTATGGTATTT-AGTAAAGAAAACCATACTGAGT
* * *
19543946 TGTGAAAAGTAGGTATGGTATTTTAGTGAAGAAAATCATACTGAGT
1 TGTGGAAAGTAGGTATGGTA-TTTAGTAAAGAAAACCATACTGAGT
19543992 T
1 T
19543993 ATAGCATTGT
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
45 4 0.05
46 75 0.91
47 3 0.04
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.30
Consensus pattern (45 bp):
TGTGGAAAGTAGGTATGGTATTTAGTAAAGAAAACCATACTGAGT
Found at i:19550812 original size:46 final size:46
Alignment explanation
Indices: 19550742--19550879 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 46
19550732 ATGGTAAAGG
* *
19550742 GTGGAATGTAGGTATGGTAATTCAGTAAAGAAAACCATACTGAGTT
1 GTGGAAAGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTT
* * *
19550788 GTGGAACGTAGGTATGGTATTTCAGTAACGAAAACCATATTGAGTT
1 GTGGAAAGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTT
* * * * *
19550834 GTGAAAAGTAGGTATGGCATTTTAGTGAAGAAAACTATACTGAGTT
1 GTGGAAAGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTT
19550880 ATTGCATTGT
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.30
Consensus pattern (46 bp):
GTGGAAAGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTT
Found at i:19556004 original size:22 final size:24
Alignment explanation
Indices: 19555978--19556021 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
19555968 ATTTTGTTCA
19555978 ACTTTAA-TTTTTAT-TCAAAAAC
1 ACTTTAATTTTTTATATCAAAAAC
19556000 ACTTTAATTTTTTATATCAAAA
1 ACTTTAATTTTTTATATCAAAA
19556022 CATATTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 7 0.35
24 6 0.30
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (24 bp):
ACTTTAATTTTTTATATCAAAAAC
Found at i:19565629 original size:56 final size:58
Alignment explanation
Indices: 19565533--19565654 Score: 212
Period size: 56 Copynumber: 2.1 Consensus size: 58
19565523 ATAAAAATGG
19565533 TGAAAATAGAGAAATGAGAAATATTTGGAAATAAATGTGGTTTTCTCCAAAATGAAAA
1 TGAAAATAGAGAAATGAGAAATATTTGGAAATAAATGTGGTTTTCTCCAAAATGAAAA
* *
19565591 TGAAAATAGAGAAATGA-AAAT-TTTGGAAATGAATGTGGTTTTCTCCAAATTGAAAA
1 TGAAAATAGAGAAATGAGAAATATTTGGAAATAAATGTGGTTTTCTCCAAAATGAAAA
19565647 TGAAAATA
1 TGAAAATA
19565655 ACCTGAAAAT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
56 41 0.66
57 4 0.06
58 17 0.27
ACGTcount: A:0.48, C:0.05, G:0.19, T:0.29
Consensus pattern (58 bp):
TGAAAATAGAGAAATGAGAAATATTTGGAAATAAATGTGGTTTTCTCCAAAATGAAAA
Done.