Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 71 of 187
Found at i:20817285 original size:19 final size:20
Alignment explanation
Indices: 20817261--20817302 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
20817251 GCAATCTTAA
20817261 ATATG-ATCTTAGATATGAT
1 ATATGAATCTTAGATATGAT
20817280 ATATGAAATCTTAGATATGAT
1 ATATG-AATCTTAGATATGAT
20817301 AT
1 AT
20817303 GCAATCTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.24
21 16 0.76
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (20 bp):
ATATGAATCTTAGATATGAT
Found at i:20817303 original size:19 final size:19
Alignment explanation
Indices: 20817266--20817321 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
20817256 CTTAAATATG
20817266 ATCTTAGATATGATATATGAA
1 ATCTTAGATATG--ATATGAA
*
20817287 ATCTTAGATATGATATGCA
1 ATCTTAGATATGATATGAA
20817306 ATCTTAGA-A-GATATGA
1 ATCTTAGATATGATATGA
20817322 TTTTGTAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.18
18 1 0.03
19 14 0.42
21 12 0.36
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.36
Consensus pattern (19 bp):
ATCTTAGATATGATATGAA
Found at i:20817320 original size:22 final size:23
Alignment explanation
Indices: 20817271--20817336 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
20817261 ATATGATCTT
*
20817271 AGATATGATATATGAAATCTT---
1 AGATATGAT-TATGCAATCTTAGA
20817292 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
20817314 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
20817337 GATTTAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
19 10 0.26
21 8 0.21
22 8 0.21
23 12 0.32
ACGTcount: A:0.39, C:0.06, G:0.17, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:20817662 original size:3 final size:3
Alignment explanation
Indices: 20817654--20817692 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
20817644 TGTTATTAAG
* * *
20817654 TTA TTA TTA TTG TTG TTA TTA TTA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
20817693 CTATATATAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:20817834 original size:17 final size:17
Alignment explanation
Indices: 20817812--20817846 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
20817802 GCATAACTTA
* *
20817812 TATATATATTTACATTT
1 TATATACATATACATTT
20817829 TATATACATATACATTT
1 TATATACATATACATTT
20817846 T
1 T
20817847 TTATTTCCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (17 bp):
TATATACATATACATTT
Found at i:20818016 original size:25 final size:25
Alignment explanation
Indices: 20817981--20818035 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
20817971 ATTAATTAAT
*
20817981 TTTA-ATATATGTAGTTATTAT-TTG
1 TTTATATATATGT-GTAATTATCTTG
*
20818005 TTTATATATATGTGTAATTATCTTT
1 TTTATATATATGTGTAATTATCTTG
20818030 TTTATA
1 TTTATA
20818036 ATCTATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 11 0.41
25 16 0.59
ACGTcount: A:0.29, C:0.02, G:0.09, T:0.60
Consensus pattern (25 bp):
TTTATATATATGTGTAATTATCTTG
Found at i:20818048 original size:32 final size:31
Alignment explanation
Indices: 20818007--20818066 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
20817997 ATTATTTGTT
* *
20818007 TATATATATGTGTAATTATCTTTTTTATAATC
1 TATATATATGTAT-ATAATCTTTTTTATAATC
*
20818039 TATATATATGTATATAATTTTTTTTATA
1 TATATATATGTATATAATCTTTTTTATA
20818067 TAAGTACATG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 13 0.52
32 12 0.48
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.58
Consensus pattern (31 bp):
TATATATATGTATATAATCTTTTTTATAATC
Found at i:20818223 original size:8 final size:8
Alignment explanation
Indices: 20818212--20818246 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
20818202 GCTTTGCATG
20818212 TTATTGAT
1 TTATTGAT
20818220 TTATT--T
1 TTATTGAT
20818226 TTATTGAT
1 TTATTGAT
20818234 TTATTGAT
1 TTATTGAT
20818242 TTATT
1 TTATT
20818247 TGTTTATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.24
8 19 0.76
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.69
Consensus pattern (8 bp):
TTATTGAT
Found at i:20818231 original size:14 final size:14
Alignment explanation
Indices: 20818212--20818238 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
20818202 GCTTTGCATG
20818212 TTATTGATTTATTT
1 TTATTGATTTATTT
20818226 TTATTGATTTATT
1 TTATTGATTTATT
20818239 GATTTATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (14 bp):
TTATTGATTTATTT
Found at i:20820592 original size:16 final size:16
Alignment explanation
Indices: 20820554--20820596 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
20820544 CCTCTCTTCT
20820554 TTTGCATT-CA-TAGC
1 TTTGCATTGCATTAGC
*
20820568 ATT-CATTGCATTAGC
1 TTTGCATTGCATTAGC
20820583 TTTGCATTGCATTA
1 TTTGCATTGCATTA
20820597 TATACATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 4 0.17
14 4 0.17
15 6 0.25
16 10 0.42
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (16 bp):
TTTGCATTGCATTAGC
Found at i:20822816 original size:44 final size:45
Alignment explanation
Indices: 20822670--20823207 Score: 526
Period size: 44 Copynumber: 12.2 Consensus size: 45
20822660 TAGCAGGTTC
* *
20822670 TGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * * * * *
20822713 TGTCTTTCC-ATATTGGTGGCGGAGTTGATCGAAGAAAGTAGATCT
1 TGTC-TTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * * * *
20822758 TGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAGCAGGTCC
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * *
20822802 TATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * * * * *
20822845 TGTCTTTCC-ATATTGGTGGCGGAGTTGATCGAAGAAAGTAGATCT
1 TGTC-TTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * *
20822890 TGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCC
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * * *
20822934 TGTCTTTCTATATTGGTAGTGAAGTGGATTGAAGAT-GCAGATCT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * * * *
20822978 TGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATAT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * *
20823023 TGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* *
20823067 TGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * * * * *
20823110 TGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * *
20823155 TGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCTGATCT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
*
20823199 TGCCTTCCT
1 TGTCTTCCT
20823208 GCACCGGCAG
Statistics
Matches: 397, Mismatches: 84, Indels: 27
0.78 0.17 0.05
Matches are distributed among these distances:
43 54 0.14
44 252 0.63
45 91 0.23
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (45 bp):
TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
Found at i:20822896 original size:132 final size:132
Alignment explanation
Indices: 20822659--20823192 Score: 915
Period size: 132 Copynumber: 4.0 Consensus size: 132
20822649 ATCAGTGAAT
* *
20822659 ATAGCAGGTTCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTTCCAT
1 ATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
* * *
20822724 ATTGGTGGCGGAGTTGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAA
66 ATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
20822789 AG
131 AG
* *
20822791 ATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTTCCAT
1 ATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
* *
20822856 ATTGGTGGCGGAGTTGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
66 ATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
20822921 AG
131 AG
* * *
20822923 ATAGCAGATCCTGTCTTTCTATATTGGTAGTGAAGTGGATTGAAGATGCAGATCTTGTCTTCCCA
1 ATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
* *
20822988 TATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCG
65 TATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
20823053 AAG
130 AAG
*
20823056 ATAGCAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
1 ATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
*
20823121 ACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
66 ATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
20823186 AG
131 AG
20823188 ATAGC
1 ATAGC
20823193 TGATCTTGCC
Statistics
Matches: 382, Mismatches: 19, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
132 259 0.68
133 123 0.32
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (132 bp):
ATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
ATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
AG
Found at i:20823162 original size:265 final size:264
Alignment explanation
Indices: 20822659--20823207 Score: 918
Period size: 265 Copynumber: 2.1 Consensus size: 264
20822649 ATCAGTGAAT
* * *
20822659 ATAGCAGGTTCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTTCCAT
1 ATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
* * * *
20822724 ATTGGTGGCGGAGTTGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAA
66 ATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCAA
*
20822789 AGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTTCC
131 AGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCC
* * *
20822854 ATATTGGTGGCGGAGTTGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
196 ATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
20822919 GAAG
261 GAAG
* *
20822923 ATAGCAGATCCTGTCTTTCTATATTGGTAGTGAAGTGGATTGAAGATGCAGATCTTGTCTTCCCA
1 ATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
*
20822988 TATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCG
65 TATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCA
* *
20823053 AAGATAGCAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCC
130 AAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCC
20823118 CATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAT
195 CATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAT
20823183 CGAAG
260 CGAAG
* * *
20823188 ATAGCTGATCTTGCCTTCCT
1 ATAGCAGATCCTGTCTTCCT
20823208 GCACCGGCAG
Statistics
Matches: 264, Mismatches: 20, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
264 27 0.10
265 237 0.90
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (264 bp):
ATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
ATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCAA
AGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCC
ATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
GAAG
Found at i:20823299 original size:88 final size:88
Alignment explanation
Indices: 20823188--20823505 Score: 465
Period size: 88 Copynumber: 3.6 Consensus size: 88
20823178 TAGATCGAAG
* * *
20823188 ATAGCTGATCTTGCCTTCCTGCACCGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTA
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
20823253 GGTTGCAGCGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * * *
20823276 ATAGTAGATCTTGCCTTCTTGCACCAACAGCGAAGCAGATCGAAGACACCAGCCTTACCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
20823341 GGTTGCAGCGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * ** * * *
20823364 GTAGCAGATATTTTCTTCCTACACCGACAGCGAAGTAGATCAAAGACACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
** *
20823429 GGTTGCAGTAGAGCAGGTTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* *
20823452 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGATGACCCCAGCC
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCC
20823506 CTATCTCCCT
Statistics
Matches: 200, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
88 200 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.19
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
GGTTGCAGCGGAGCAGGCTAAAA
Found at i:20823318 original size:265 final size:264
Alignment explanation
Indices: 20822777--20823321 Score: 632
Period size: 265 Copynumber: 2.1 Consensus size: 264
20822767 GTATTGGCGT
*
20822777 GAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
* * * *
20822842 TCTTGTCTTTCCATATTGGTGGCGGAGTTGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC
* * * ** * * ** * **
20822907 GTGAAGTAGATCGAAGATAGCAGATCCTGTCTTTCTATATTGGTAGTGAAGTGGATTGAAGATGC
131 GTGAAGTAGATCGAAGATAGCAGATCCTGCCTTCCTACACCGGCAGCGAAGCAGATCGAAGAACC
* * * * * * * **
20822972 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATT
196 AGACCTTGTCCTCCCATA-TGGTGGCGAAGCAGAGCGAAAAAAGCAGATATTGCCTTCATGCACC
** *
20823037 GGCGT
260 AACGC
* *
20823042 GAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
20823107 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC
* * *
20823172 GTGAAGTAGATCGAAGATAGCTGATCTTGCCTTCCTGCACCGGCAGCGAAGCAGATCGAAGACAC
131 GTGAAGTAGATCGAAGATAGCAGATCCTGCCTTCCTACACCGGCAGCGAAGCAGATCGAAGA-AC
* * * * *
20823237 CAG-CCTTG-CCTCCC-TA-GGTTGCAGCGGAGCAG-GCTAAAAATAGTAGATCTTGCCTTCTTG
195 CAGACCTTGTCCTCCCATATGG-TG--GCGAAGCAGAGCGAAAAA-AGCAGATATTGCCTTCATG
20823297 CACCAACAGC
256 CACCAAC-GC
*
20823307 GAAGCAGATCGAAGA
1 GAAGTAGATCGAAGA
20823322 CACCAGCCTT
Statistics
Matches: 234, Mismatches: 40, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
261 2 0.01
262 2 0.01
263 7 0.03
264 29 0.12
265 191 0.82
266 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (264 bp):
GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC
GTGAAGTAGATCGAAGATAGCAGATCCTGCCTTCCTACACCGGCAGCGAAGCAGATCGAAGAACC
AGACCTTGTCCTCCCATATGGTGGCGAAGCAGAGCGAAAAAAGCAGATATTGCCTTCATGCACCA
ACGC
Found at i:20823575 original size:44 final size:44
Alignment explanation
Indices: 20823505--20823714 Score: 280
Period size: 44 Copynumber: 4.8 Consensus size: 44
20823495 TGACCCCAGC
* * *
20823505 CCTATCTCCCTGGTCAACAGTAGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
*
20823549 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * * *
20823593 TCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGT-AGGT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGA-AT
**
20823637 TTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
20823681 CCTATCTCCCTGAG-CAGCAGTGGAGTAAGTTGAA
1 CCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
20823715 AATAGCAGAT
Statistics
Matches: 146, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
43 1 0.01
44 143 0.98
45 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:20824519 original size:12 final size:12
Alignment explanation
Indices: 20824502--20824527 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
20824492 AGGATATGCA
20824502 ATCTTAGATATG
1 ATCTTAGATATG
20824514 ATCTTAGATATG
1 ATCTTAGATATG
20824526 AT
1 AT
20824528 ATATGCAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (12 bp):
ATCTTAGATATG
Found at i:20824550 original size:19 final size:20
Alignment explanation
Indices: 20824514--20824561 Score: 80
Period size: 19 Copynumber: 2.4 Consensus size: 20
20824504 CTTAGATATG
20824514 ATCTTAGATATGATATATGCA
1 ATCTTAGATATGA-ATATGCA
20824535 ATCTTAGATATG-ATATGCA
1 ATCTTAGATATGAATATGCA
20824554 ATCTTAGA
1 ATCTTAGA
20824562 AGATATGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 15 0.56
21 12 0.44
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (20 bp):
ATCTTAGATATGAATATGCA
Found at i:20824583 original size:23 final size:22
Alignment explanation
Indices: 20824519--20824584 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 22
20824509 ATATGATCTT
20824519 AGATATGATATATGCAATCTT---
1 AGATATG--ATATGCAATCTTAGA
20824540 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATCTTAGA
* *
20824562 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGCAATCTTAGA
20824585 GATTTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 12 0.31
21 7 0.18
22 8 0.21
23 12 0.31
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATCTTAGA
Found at i:20824909 original size:3 final size:3
Alignment explanation
Indices: 20824901--20824936 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
20824891 TGTTATTAAG
* *
20824901 TTA TTA TTA TTG TTA TTA TTA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
20824937 CTATATATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:20825091 original size:17 final size:17
Alignment explanation
Indices: 20825060--20825103 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
20825050 CATAACTTTT
*
20825060 ATATACA-TATATATAC
1 ATATACATTTTATATAC
*
20825076 ATTTACATTTTATATAC
1 ATATACATTTTATATAC
20825093 ATATACATTTT
1 ATATACATTTT
20825104 TTATTTCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATACATTTTATATAC
Found at i:20825303 original size:30 final size:31
Alignment explanation
Indices: 20825269--20825326 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
20825259 TAGTTGTTTA
*
20825269 TATATATATGTA-ATTATCTTTTTTATAATC
1 TATATATATGTATATAATCTTTTTTATAATC
*
20825299 TATATATATGTATATAATTTTTTTTATA
1 TATATATATGTATATAATCTTTTTTATA
20825327 TATGTACATG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (31 bp):
TATATATATGTATATAATCTTTTTTATAATC
Found at i:20825319 original size:28 final size:27
Alignment explanation
Indices: 20825267--20825346 Score: 70
Period size: 28 Copynumber: 2.8 Consensus size: 27
20825257 ATTAGTTGTT
*
20825267 TATATATATATGTAATTATCTTTTTTATAA
1 TATATATATATGT-A-TAT-ATTTTTATAA
* * *
20825297 TCTATATATATGTATATAATTTTTTTTA
1 TATATATATATGTATAT-ATTTTTATAA
* *
20825325 TATATGTACATGTATATATTTT
1 TATATATATATGTATATATTTT
20825347 GTACCCTTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
27 5 0.12
28 24 0.57
29 1 0.02
30 12 0.29
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (27 bp):
TATATATATATGTATATATTTTTATAA
Found at i:20826621 original size:16 final size:17
Alignment explanation
Indices: 20826587--20826623 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
20826577 TATAAAAATG
20826587 TATAAAACATCAGATTT
1 TATAAAACATCAGATTT
*
20826604 TATAAAATATCA-ATTT
1 TATAAAACATCAGATTT
20826620 TATA
1 TATA
20826624 TGTCTTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.41
Consensus pattern (17 bp):
TATAAAACATCAGATTT
Found at i:20829026 original size:17 final size:17
Alignment explanation
Indices: 20829004--20829036 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
20828994 TTAATTACTA
20829004 AAATTTAAATTTATTTT
1 AAATTTAAATTTATTTT
*
20829021 AAATTTGAATTTATTT
1 AAATTTAAATTTATTT
20829037 AAAAATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
AAATTTAAATTTATTTT
Found at i:20829186 original size:7 final size:7
Alignment explanation
Indices: 20829174--20829219 Score: 92
Period size: 7 Copynumber: 6.6 Consensus size: 7
20829164 TTTTGCATGC
20829174 AAAATAA
1 AAAATAA
20829181 AAAATAA
1 AAAATAA
20829188 AAAATAA
1 AAAATAA
20829195 AAAATAA
1 AAAATAA
20829202 AAAATAA
1 AAAATAA
20829209 AAAATAA
1 AAAATAA
20829216 AAAA
1 AAAA
20829220 AAATTTATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAATAA
Found at i:20833228 original size:24 final size:22
Alignment explanation
Indices: 20833187--20833230 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
20833177 CATTAATCAA
*
20833187 ATTTCATATACATGTATCATAC
1 ATTTCATATACATATATCATAC
20833209 ATTTCATATATCAATATATCAT
1 ATTTCATATA-C-ATATATCAT
20833231 GTAACATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 1 0.05
24 8 0.42
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (22 bp):
ATTTCATATACATATATCATAC
Found at i:20833509 original size:25 final size:25
Alignment explanation
Indices: 20833441--20833513 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 25
20833431 ACAAGTTGTA
20833441 AACGGTAAGCTC-CTCTGAGCTGAAT
1 AACGGTAAGCTCTCTC-GAGCTGAAT
* * *
20833466 AACAGTAAACTCAT-GCGAGCTGAAT
1 AACGGTAAGCTC-TCTCGAGCTGAAT
*
20833491 ATCGGTAAGCTCTCTCGAGCTGA
1 AACGGTAAGCTCTCTCGAGCTGA
20833514 GAATTGGTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
24 1 0.03
25 36 0.95
26 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (25 bp):
AACGGTAAGCTCTCTCGAGCTGAAT
Found at i:20836108 original size:21 final size:22
Alignment explanation
Indices: 20836082--20836137 Score: 78
Period size: 24 Copynumber: 2.5 Consensus size: 22
20836072 ATAGAGCTAG
20836082 TGTCGCAACAC-GACAACCCTA
1 TGTCGCAACACAGACAACCCTA
*
20836103 TGTCGCAACACCAAGGCAACCCTA
1 TGTCGCAACA-C-AGACAACCCTA
20836127 TGTCGCAACAC
1 TGTCGCAACAC
20836138 CAAGGCCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 10 0.32
22 1 0.03
23 1 0.03
24 19 0.61
ACGTcount: A:0.32, C:0.38, G:0.16, T:0.14
Consensus pattern (22 bp):
TGTCGCAACACAGACAACCCTA
Found at i:20836127 original size:24 final size:24
Alignment explanation
Indices: 20836095--20836143 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
20836085 CGCAACACGA
20836095 CAACCCTATGTCGCAACACCAAGG
1 CAACCCTATGTCGCAACACCAAGG
20836119 CAACCCTATGTCGCAACACCAAGG
1 CAACCCTATGTCGCAACACCAAGG
20836143 C
1 C
20836144 CAAAATTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.39, G:0.16, T:0.12
Consensus pattern (24 bp):
CAACCCTATGTCGCAACACCAAGG
Found at i:20839253 original size:364 final size:364
Alignment explanation
Indices: 20838584--20839314 Score: 1462
Period size: 364 Copynumber: 2.0 Consensus size: 364
20838574 AATATTATTG
20838584 TTCATAAGTGCACTTTAGAGCAAGAATTTGATGTTTCTATAGAAGGAAAAATTGTTCAAAATGTC
1 TTCATAAGTGCACTTTAGAGCAAGAATTTGATGTTTCTATAGAAGGAAAAATTGTTCAAAATGTC
20838649 ATAAAACATAAGAAAAAGGAATAAAATTTAATTTCCGAGCCTAGGGGCAAAATCATAATTTTGTG
66 ATAAAACATAAGAAAAAGGAATAAAATTTAATTTCCGAGCCTAGGGGCAAAATCATAATTTTGTG
20838714 AAACTTTAGGAGCAAAAATGTAATTTTGCCAAAATGTGATTTTTGGACTGGATTGAATAATGTGA
131 AAACTTTAGGAGCAAAAATGTAATTTTGCCAAAATGTGATTTTTGGACTGGATTGAATAATGTGA
20838779 GTGTAAAATAAGTTAAATGTGTTATTATAAGTCAATAAAGACAAGATATTGACTTTGATTAGTGA
196 GTGTAAAATAAGTTAAATGTGTTATTATAAGTCAATAAAGACAAGATATTGACTTTGATTAGTGA
20838844 AAAAGAAAAAAAATAAGAAAAAAGTGAGAAATTTCCCGATTGAATATTCGGAATAAAAAGGGATA
261 AAAAGAAAAAAAATAAGAAAAAAGTGAGAAATTTCCCGATTGAATATTCGGAATAAAAAGGGATA
20838909 CGAATGAAGTAACACAAATGATCACATGTGTGACATGGA
326 CGAATGAAGTAACACAAATGATCACATGTGTGACATGGA
20838948 TTCATAAGTGCACTTTAGAGCAAGAATTTGATGTTTCTATAGAAGGAAAAATTGTTCAAAATGTC
1 TTCATAAGTGCACTTTAGAGCAAGAATTTGATGTTTCTATAGAAGGAAAAATTGTTCAAAATGTC
20839013 ATAAAACATAAGAAAAAGGAATAAAATTTAATTTCCGAGCCTAGGGGCAAAATCATAATTTTGTG
66 ATAAAACATAAGAAAAAGGAATAAAATTTAATTTCCGAGCCTAGGGGCAAAATCATAATTTTGTG
20839078 AAACTTTAGGAGCAAAAATGTAATTTTGCCAAAATGTGATTTTTGGACTGGATTGAATAATGTGA
131 AAACTTTAGGAGCAAAAATGTAATTTTGCCAAAATGTGATTTTTGGACTGGATTGAATAATGTGA
20839143 GTGTAAAATAAGTTAAATGTGTTATTATAAGTCAATAAAGACAAGATATTGACTTTGATTAGTGA
196 GTGTAAAATAAGTTAAATGTGTTATTATAAGTCAATAAAGACAAGATATTGACTTTGATTAGTGA
20839208 AAAAGAAAAAAAATAAGAAAAAAGTGAGAAATTTCCCGATTGAATATTCGGAATAAAAAGGGATA
261 AAAAGAAAAAAAATAAGAAAAAAGTGAGAAATTTCCCGATTGAATATTCGGAATAAAAAGGGATA
20839273 CGAATGAAGTAACACAAATGATCACATGTGTGACATGGA
326 CGAATGAAGTAACACAAATGATCACATGTGTGACATGGA
20839312 TTC
1 TTC
20839315 TATGTAGGTC
Statistics
Matches: 367, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
364 367 1.00
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.29
Consensus pattern (364 bp):
TTCATAAGTGCACTTTAGAGCAAGAATTTGATGTTTCTATAGAAGGAAAAATTGTTCAAAATGTC
ATAAAACATAAGAAAAAGGAATAAAATTTAATTTCCGAGCCTAGGGGCAAAATCATAATTTTGTG
AAACTTTAGGAGCAAAAATGTAATTTTGCCAAAATGTGATTTTTGGACTGGATTGAATAATGTGA
GTGTAAAATAAGTTAAATGTGTTATTATAAGTCAATAAAGACAAGATATTGACTTTGATTAGTGA
AAAAGAAAAAAAATAAGAAAAAAGTGAGAAATTTCCCGATTGAATATTCGGAATAAAAAGGGATA
CGAATGAAGTAACACAAATGATCACATGTGTGACATGGA
Found at i:20839471 original size:51 final size:48
Alignment explanation
Indices: 20839348--20839587 Score: 212
Period size: 51 Copynumber: 4.8 Consensus size: 48
20839338 GAAAGTGATG
* *
20839348 GTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAT-
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-AT--ATTC
* * * *
20839398 GTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTC
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA--TTC
* * * *
20839448 GATCACTTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATATTAATG
1 G-TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-T--TC
* * * * *
20839500 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGAATCGAAAAATTTA
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCG-GATA-TTC
* * *
20839550 ATCACGTGTGTAATACTATGTGAAGGCTACTACGTGTA
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
20839588 TCAAATGATA
Statistics
Matches: 159, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
49 3 0.02
50 74 0.47
51 75 0.47
52 6 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (48 bp):
GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATATTC
Found at i:20839588 original size:101 final size:101
Alignment explanation
Indices: 20839349--20839624 Score: 297
Period size: 101 Copynumber: 2.7 Consensus size: 101
20839339 AAAGTGATGG
* * * *
20839349 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAATGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGAATGAAATGTCACATGTGTAGTAC
* * * ** *
20839414 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTACGCGAACCGGAAAAATTCAA
* * * *
20839450 TCACTTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAT-TAATGGTCACGTGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGA-ATGAAAT-GTCACATGTGTAGT
* * *
20839514 ACTATGTGCAGGCTACTACGTGAATC-GAAAAATTTAA
64 ACTATGTGCAGGCTACTACGCGAACCGGAAAAATTCAA
* * * * *
20839551 TCACGTGTGTAATACTATGTGAAGGCTACTACGTGTATCA-AATGATAATAGTTAAATGAGTGGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGAATGA-AAT-GTCACATGTGTAGT
20839615 ACTATGTGCA
64 ACTATGTGCA
20839625 AACCACCGAA
Statistics
Matches: 145, Mismatches: 26, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
99 2 0.01
100 1 0.01
101 106 0.73
102 36 0.25
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGAATGAAATGTCACATGTGTAGTAC
TATGTGCAGGCTACTACGCGAACCGGAAAAATTCAA
Found at i:20842079 original size:47 final size:48
Alignment explanation
Indices: 20842004--20842094 Score: 123
Period size: 47 Copynumber: 1.9 Consensus size: 48
20841994 CTTTCGTTCA
* * *
20842004 GTGATATGTGGTTTCTGTATAAGACCATATCTGGGA-TATGGCATCGGT
1 GTGATATGTGGCTACTGTATAAGACCATAGCT-GGACTATGGCATCGGT
*
20842052 GTGATATGT-GCTACTGTGTAAGACCATAGCTGGACTATGGCAT
1 GTGATATGTGGCTACTGTATAAGACCATAGCTGGACTATGGCAT
20842095 AGAGAAAACG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
46 3 0.08
47 26 0.68
48 9 0.24
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (48 bp):
GTGATATGTGGCTACTGTATAAGACCATAGCTGGACTATGGCATCGGT
Found at i:20845311 original size:51 final size:49
Alignment explanation
Indices: 20845192--20845430 Score: 239
Period size: 51 Copynumber: 4.8 Consensus size: 49
20845182 AAAGTGATGG
* * *** *
20845192 TCACGTGTGTAGTACTACGTGTAGGCTACTACGTGTACCGGA-ATGAAAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GATA-GTTTGA
* * * * *
20845242 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GATAG-TTTGA
* *
20845293 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATA-TTAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCG-ATAGTT--TGA
* * *
20845344 TCACGTGTGTAGTACTATGTGCGGGCTACTACGTGAACCGGAAAGTTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GATAGTTTGA
*
20845394 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
20845431 TCGAATGATA
Statistics
Matches: 156, Mismatches: 26, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
49 2 0.01
50 73 0.47
51 78 0.50
52 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGATAGTTTGA
Found at i:20845460 original size:101 final size:102
Alignment explanation
Indices: 20845192--20845467 Score: 344
Period size: 101 Copynumber: 2.7 Consensus size: 102
20845182 AAAGTGATGG
* * * *
20845192 TCACGTGTGTAGTACTACGTGTAGGCTACTACGTGTACCGGAATGA-AA-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGATAATGGTCACATGTGTAGT
* * *
20845255 ACTATGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
65 ACTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
* *
20845293 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAAT-ATTAATGGTCACGTGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGA-TAATGGTCACATGTGTAGT
* * * *
20845357 ACTATGTGCGGGCTACTACGTGAACCGGAAAG-TTTGA
65 ACTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
* * * * *
20845394 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATAGTTAAATGAGTGGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
20845459 CTATGTGCA
66 CTATGTGCA
20845468 AACCACTGAA
Statistics
Matches: 151, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
99 1 0.01
100 4 0.03
101 106 0.70
102 40 0.26
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
Found at i:20850856 original size:23 final size:23
Alignment explanation
Indices: 20850830--20850953 Score: 103
Period size: 23 Copynumber: 5.4 Consensus size: 23
20850820 TTAGTCACAT
*
20850830 ATCTACTGGCAGTTCATTTGCAA
1 ATCTACTGGCAGTTCATCTGCAA
* *
20850853 ATCTATCGTTG--GTTTA-CTCGCAA
1 ATCTA-C-TGGCAGTTCATCT-GCAA
20850876 ATCTACTGGCAGTTCATCTGCAA
1 ATCTACTGGCAGTTCATCTGCAA
* * * *
20850899 ATCTATTGTC-GATTTATCCGCAA
1 ATCTACTGGCAG-TTCATCTGCAA
* *
20850922 ATCTACTAGCAGTTCATATGCAA
1 ATCTACTGGCAGTTCATCTGCAA
20850945 ATCTACTGG
1 ATCTACTGG
20850954 TGGTTTGTCC
Statistics
Matches: 77, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
21 2 0.03
22 3 0.04
23 66 0.86
24 4 0.05
25 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (23 bp):
ATCTACTGGCAGTTCATCTGCAA
Found at i:20850885 original size:46 final size:46
Alignment explanation
Indices: 20850830--20850949 Score: 170
Period size: 46 Copynumber: 2.6 Consensus size: 46
20850820 TTAGTCACAT
* * *
20850830 ATCTACTGGCAGTTCATTTGCAAATCTATCGTTGGTTTA-CTCGCAA
1 ATCTACTGGCAGTTCATATGCAAATCTATCGTCGATTTATC-CGCAA
* *
20850876 ATCTACTGGCAGTTCATCTGCAAATCTATTGTCGATTTATCCGCAA
1 ATCTACTGGCAGTTCATATGCAAATCTATCGTCGATTTATCCGCAA
*
20850922 ATCTACTAGCAGTTCATATGCAAATCTA
1 ATCTACTGGCAGTTCATATGCAAATCTA
20850950 CTGGTGGTTT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 66 0.99
47 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (46 bp):
ATCTACTGGCAGTTCATATGCAAATCTATCGTCGATTTATCCGCAA
Found at i:20850965 original size:46 final size:44
Alignment explanation
Indices: 20850830--20850976 Score: 159
Period size: 46 Copynumber: 3.2 Consensus size: 44
20850820 TTAGTCACAT
* * *
20850830 ATCTACTGGCAGTTCATTTGCAAATCTATCGTTGGTTTACTCGCAA
1 ATCTACTGGCAGTTCATATGCAAATCTAT-GGTGGTTTTC-CGCAA
* * *
20850876 ATCTACTGGCAGTTCATCTGCAAATCTATTGTCGATTTATCCGCAA
1 ATCTACTGGCAGTTCATATGCAAATCTATGGT-GGTTT-TCCGCAA
* *
20850922 ATCTACTAGCAGTTCATATGCAAATCTACTGGTGGTTTGTCCGCAT
1 ATCTACTGGCAGTTCATATGCAAATCTA-TGGTGGTTT-TCCGCAA
*
20850968 ATTTACTGG
1 ATCTACTGG
20850977 AGGTATATCC
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
45 1 0.01
46 80 0.94
47 4 0.05
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (44 bp):
ATCTACTGGCAGTTCATATGCAAATCTATGGTGGTTTTCCGCAA
Found at i:20853422 original size:6 final size:6
Alignment explanation
Indices: 20853411--20853477 Score: 134
Period size: 6 Copynumber: 11.2 Consensus size: 6
20853401 TATTTACAAC
20853411 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
20853459 TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA T
20853478 TATTTATTTA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 61 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
TAAAAA
Found at i:20858128 original size:16 final size:16
Alignment explanation
Indices: 20858092--20858174 Score: 50
Period size: 16 Copynumber: 5.2 Consensus size: 16
20858082 CATAAACCCT
20858092 AAAA-AATCATAAAAA
1 AAAATAATCATAAAAA
20858107 ATAAATAATC-TAAAATA
1 A-AAATAATCATAAAA-A
**
20858124 AAAATAAAAATAAAAA
1 AAAATAATCATAAAAA
*
20858140 TAAA-AAT-A-AAAATA
1 AAAATAATCATAAAA-A
**
20858154 AAAATAAAAATAAAAA
1 AAAATAATCATAAAAA
20858170 TAAAA
1 -AAAA
20858175 ATAAAAATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
13 4 0.08
14 5 0.09
15 5 0.09
16 20 0.38
17 19 0.36
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAATAATCATAAAAA
Found at i:20858129 original size:6 final size:6
Alignment explanation
Indices: 20858103--20858185 Score: 139
Period size: 6 Copynumber: 13.5 Consensus size: 6
20858093 AAAAATCATA
*
20858103 AAAAAT AAATAAT CTAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAA-AAT -AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
20858153 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA
20858186 CCAAATTGAA
Statistics
Matches: 73, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
6 65 0.89
7 6 0.08
8 2 0.03
ACGTcount: A:0.81, C:0.01, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:20864091 original size:101 final size:102
Alignment explanation
Indices: 20863971--20864155 Score: 286
Period size: 101 Copynumber: 1.8 Consensus size: 102
20863961 AAAGTGATGG
* *
20863971 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-CTGGAATGAT-A-GGTCGCATGTGTAG
1 TCACGTGTGTAGTACTATGTGCAGGATACTACGTGTATC-GG-ATGATAATGGTCACATGTGTAG
20864033 TACTATGTGCAGACTACTATGCGTACCGGATAGTTTCGA
64 TACTATGTGCAGACTACTATGCGTACCGGATAGTTTCGA
* *
20864072 TCACGTGTGTAGTACTATGTGTAGGATACTACGTGTATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGATACTACGTGTATCGGATGATAATGGTCACATGTGTAGTA
*
20864137 CTATGTGCAGGCTACTATG
66 CTATGTGCAGACTACTATG
20864156 TGAACCGAAC
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
100 4 0.05
101 38 0.50
102 34 0.45
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGATACTACGTGTATCGGATGATAATGGTCACATGTGTAGTA
CTATGTGCAGACTACTATGCGTACCGGATAGTTTCGA
Found at i:20864102 original size:51 final size:51
Alignment explanation
Indices: 20863971--20864155 Score: 162
Period size: 51 Copynumber: 3.6 Consensus size: 51
20863961 AAAGTGATGG
* * * * * * *
20863971 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGA-A-TGATAGG
1 TCACATGTGTAGTACTATGTGCAGGATACTATGCGTACCGGATAGTAAT-GA
* *
20864021 TCGCATGTGTAGTACTATGTGCA-GACTACTATGCGTACCGGATAGT-TTCGA
1 TCACATGTGTAGTACTATGTGCAGGA-TACTATGCGTACCGGATAGTAAT-GA
* * * * * * *
20864072 TCACGTGTGTAGTACTATGTGTAGGATACTACGTGTATCGGATGGTAATGG
1 TCACATGTGTAGTACTATGTGCAGGATACTATGCGTACCGGATAGTAATGA
*
20864123 TCACATGTGTAGTACTATGTGCAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGATACTATG
20864156 TGAACCGAAC
Statistics
Matches: 108, Mismatches: 22, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
49 1 0.01
50 34 0.31
51 69 0.64
52 4 0.04
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGATACTATGCGTACCGGATAGTAATGA
Found at i:20864215 original size:45 final size:45
Alignment explanation
Indices: 20864159--20864251 Score: 159
Period size: 45 Copynumber: 2.1 Consensus size: 45
20864149 TACTATGTGA
* *
20864159 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
*
20864204 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
20864249 ACC
1 ACC
20864252 AAGTATCTGC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:20864398 original size:8 final size:8
Alignment explanation
Indices: 20864385--20864409 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
20864375 ATTGTGATTG
20864385 AAAGTGAA
1 AAAGTGAA
20864393 AAAGTGAA
1 AAAGTGAA
20864401 AAAGTGAA
1 AAAGTGAA
20864409 A
1 A
20864410 TTGTGAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.12
Consensus pattern (8 bp):
AAAGTGAA
Found at i:20864527 original size:23 final size:22
Alignment explanation
Indices: 20864489--20864533 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
20864479 AAAAATGGTG
20864489 AATATTGAATTAGAAGCTGAAT
1 AATATTGAATTAGAAGCTGAAT
20864511 AATATATGAAATT-GAAGCTGAAT
1 AATAT-TG-AATTAGAAGCTGAAT
20864534 GAGTCTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.24
23 12 0.57
24 4 0.19
ACGTcount: A:0.47, C:0.04, G:0.18, T:0.31
Consensus pattern (22 bp):
AATATTGAATTAGAAGCTGAAT
Found at i:20866329 original size:23 final size:23
Alignment explanation
Indices: 20866303--20866353 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
20866293 TTAGTCGCAT
20866303 ATCTACTAACAGTTCATCTGCAA
1 ATCTACTAACAGTTCATCTGCAA
* ** *
20866326 ATCTATTGGCAGTTCATTTGCAA
1 ATCTACTAACAGTTCATCTGCAA
20866349 ATCTA
1 ATCTA
20866354 TTGGTGGTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (23 bp):
ATCTACTAACAGTTCATCTGCAA
Found at i:20866363 original size:23 final size:23
Alignment explanation
Indices: 20866312--20866357 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
20866302 TATCTACTAA
20866312 CAGTTCATCTGCAAATCTATTGG
1 CAGTTCATCTGCAAATCTATTGG
*
20866335 CAGTTCATTTGCAAATCTATTGG
1 CAGTTCATCTGCAAATCTATTGG
20866358 TGGTTCGTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (23 bp):
CAGTTCATCTGCAAATCTATTGG
Found at i:20869989 original size:16 final size:16
Alignment explanation
Indices: 20869970--20870028 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
20869960 GTTTTCATTA
*
20869970 TCTAGAGTTTTCACAG
1 TCTATAGTTTTCACAG
* *
20869986 TCTATAGTTGTCTCAG
1 TCTATAGTTTTCACAG
* *
20870002 CCTATAGTTTTTAACAG
1 TCTATAG-TTTTCACAG
20870019 TCTATAGTTT
1 TCTATAGTTT
20870029 CAAATCTAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
16 22 0.65
17 12 0.35
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (16 bp):
TCTATAGTTTTCACAG
Found at i:20875367 original size:20 final size:20
Alignment explanation
Indices: 20875310--20875367 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
20875300 TAAGTTTATG
*
20875310 CTAAGTAAATGGAATGGAAA
1 CTAAGTAAATGGAATGGTAA
*
20875330 GTAAGTAAATGGAATGGTAA
1 CTAAGTAAATGGAATGGTAA
20875350 CTAAGTAAATGGAATGGT
1 CTAAGTAAATGGAATGGT
20875368 TCTTAGTCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.45, C:0.03, G:0.28, T:0.24
Consensus pattern (20 bp):
CTAAGTAAATGGAATGGTAA
Found at i:20876102 original size:20 final size:19
Alignment explanation
Indices: 20876077--20876121 Score: 74
Period size: 20 Copynumber: 2.4 Consensus size: 19
20876067 ATCTGTAAGT
20876077 TAAGTTATATTGGCATGGTG
1 TAAGTTATATTGGCAT-GTG
20876097 TAAGTTATATTGGCATGTG
1 TAAGTTATATTGGCATGTG
20876116 T-AGTTA
1 TAAGTTA
20876122 AGTTGAATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 5 0.20
19 4 0.16
20 16 0.64
ACGTcount: A:0.27, C:0.04, G:0.27, T:0.42
Consensus pattern (19 bp):
TAAGTTATATTGGCATGTG
Found at i:20877722 original size:3 final size:3
Alignment explanation
Indices: 20877714--20877766 Score: 70
Period size: 3 Copynumber: 17.7 Consensus size: 3
20877704 GACATCTGAT
** * *
20877714 TCA TCA TCA TCA TTG TCG TCG TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
20877762 TCA TC
1 TCA TC
20877767 TATTGAAGCC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.26, C:0.32, G:0.06, T:0.36
Consensus pattern (3 bp):
TCA
Found at i:20892860 original size:29 final size:27
Alignment explanation
Indices: 20892842--20892911 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
20892832 ATATTAAGTC
20892842 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
20892869 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
20892897 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
20892912 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:20892905 original size:28 final size:28
Alignment explanation
Indices: 20892842--20892936 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
20892832 ATATTAAGTC
*
20892842 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
20892869 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
20892897 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
20892926 CGCACACTTAG
1 CGCACACTTAG
20892937 CACCGATCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.36
28 23 0.38
29 16 0.26
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:20911108 original size:38 final size:37
Alignment explanation
Indices: 20911041--20911153 Score: 145
Period size: 38 Copynumber: 3.0 Consensus size: 37
20911031 TTCATCCTTT
*
20911041 TGAATACATGTTAAAGCATGTTTACTGCTAGTGTTGAA
1 TGAATACATGTT-AAGCATGTTTACTGCTAGTGATGAA
* * *
20911079 CTGAATACACGTTAAGCATGTTAATTGCTAGTGATGAA
1 -TGAATACATGTTAAGCATGTTTACTGCTAGTGATGAA
* *
20911117 TCAAATACATGTTAATCATGTTTACTGCTAGTGATGA
1 T-GAATACATGTTAAGCATGTTTACTGCTAGTGATGA
20911154 TTCGTTCTAT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
37 1 0.02
38 52 0.81
39 11 0.17
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.35
Consensus pattern (37 bp):
TGAATACATGTTAAGCATGTTTACTGCTAGTGATGAA
Found at i:20911320 original size:21 final size:21
Alignment explanation
Indices: 20911296--20911347 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
20911286 ATATGTTGTG
*
20911296 TATCCACAATAAGTGGTAGTT
1 TATCCACAATAAGTAGTAGTT
* * *
20911317 TATCTACAAATCAGTAGTGGTT
1 TATCCAC-AATAAGTAGTAGTT
20911339 TATCCACAA
1 TATCCACAA
20911348 CCCAAAGTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (21 bp):
TATCCACAATAAGTAGTAGTT
Found at i:20912761 original size:36 final size:36
Alignment explanation
Indices: 20912710--20912781 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
20912700 TCAAGCTTTG
* *
20912710 ATTCTAGTATGTTCATGTCCTTATAGGTGGTTACCT
1 ATTCTAGTATATTCATGTCCTCATAGGTGGTTACCT
*
20912746 ATTCTAGTATATTCATGTCCTCATCGGTGGTTACCT
1 ATTCTAGTATATTCATGTCCTCATAGGTGGTTACCT
20912782 TCTTACAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.43
Consensus pattern (36 bp):
ATTCTAGTATATTCATGTCCTCATAGGTGGTTACCT
Found at i:20912861 original size:3 final size:3
Alignment explanation
Indices: 20912853--20912915 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
20912843 AAAATGGGTC
20912853 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
20912901 CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT
20912916 TGTTGAGTAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:20914790 original size:26 final size:26
Alignment explanation
Indices: 20914761--20914813 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20914751 ATTAAATTAA
* * *
20914761 AATTATCATAAATATAATTATTATTT
1 AATTATAATAAAGATAAATATTATTT
20914787 AATTATAATAAAGATAAATATTATTT
1 AATTATAATAAAGATAAATATTATTT
20914813 A
1 A
20914814 TGTTAATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (26 bp):
AATTATAATAAAGATAAATATTATTT
Found at i:20916656 original size:9 final size:9
Alignment explanation
Indices: 20916642--20916672 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
20916632 GTTAAACGAA
20916642 TCGAGTTAT
1 TCGAGTTAT
*
20916651 TCGAGTTAA
1 TCGAGTTAT
20916660 TCGAGTTAT
1 TCGAGTTAT
20916669 TCGA
1 TCGA
20916673 ATCAAATCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:20916744 original size:9 final size:9
Alignment explanation
Indices: 20916727--20916763 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
20916717 TGAATTTTCG
20916727 AATTCGAAT
1 AATTCGAAT
*
20916736 AACTCGAAT
1 AATTCGAAT
*
20916745 AATTCAAAT
1 AATTCGAAT
20916754 AATTCGAAT
1 AATTCGAAT
20916763 A
1 A
20916764 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:20917011 original size:30 final size:31
Alignment explanation
Indices: 20916977--20917036 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
20916967 AAACCTTTTA
*
20916977 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
20917007 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
20917037 TCTCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:20917797 original size:5 final size:5
Alignment explanation
Indices: 20917787--20917812 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
20917777 CTCAAAAATT
20917787 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
20917813 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:20918670 original size:125 final size:125
Alignment explanation
Indices: 20918369--20918715 Score: 493
Period size: 125 Copynumber: 2.8 Consensus size: 125
20918359 CGAGTTGATG
** * *
20918369 TTTCTGATAAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAAAATTTTTGAAATCG
1 TTTCTGAGCAAATAGTAT-AAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
*
20918434 CGGCCTCGTGGACGTGCTTTTGCTACAGTAGGGCACAGAAGAAACAATTATTTTTTTGACA
65 CGGCCTCGTGGACGCGCTTTTGCTACAGTAGGGCACAGAAGAAACAATTATTTTTTTGACA
*
20918495 TTTCTGAGCAAATAGTATAATATCGCTTCTAGCAGGATGATATTTGAGAAGAATTTGTGAAATCG
1 TTTCTGAGCAAATAGTATAA-ATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
* * * * * * *
20918560 CAGACTCGTGGACGCGCTTTTGCTACAGTAGGTCA-TGTAAGAAA-TATT-TTTTGTTTTACT
65 CGGCCTCGTGGACGCGCTTTTGCTACAGTAGGGCACAG-AAGAAACAATTATTTT-TTTGACA
*
20918620 TTTCTGAGCAAATAGTATATAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATTG
1 TTTCTGAGCAAATAGTATA-AATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
*
20918685 CGGCCTCCTGGACGCGCTTTTGCTACAGTAG
65 CGGCCTCGTGGACGCGCTTTTGCTACAGTAG
20918716 CATGTTTAGG
Statistics
Matches: 199, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
124 4 0.02
125 100 0.50
126 95 0.48
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (125 bp):
TTTCTGAGCAAATAGTATAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGC
GGCCTCGTGGACGCGCTTTTGCTACAGTAGGGCACAGAAGAAACAATTATTTTTTTGACA
Found at i:20920504 original size:29 final size:29
Alignment explanation
Indices: 20920462--20920931 Score: 621
Period size: 29 Copynumber: 15.9 Consensus size: 29
20920452 AATATCCATC
* *
20920462 TAATTAAATTAGGTTAAGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
20920491 TAATCAAATTAGGTTA-GGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
* *
20920519 TAATTAAATTAGGTTTAATCAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGG--T--T---A--GGGTTA--G----GGTTTT
*
20920563 TAATCAAATTAGGTTAGGGTTAGAGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
20920592 TAATCAAATTAGGTTA-GGTTAGGG-TTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
20920619 TAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
20920648 TAATCAAATTAGGTTAGGGTTAGAGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
20920677 TAATCAAATTAGGTTA-GGTTAGGG-TTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
20920704 TAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
20920733 TAATCAAATTAGGTTAGGGTTAAGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
* *
20920762 TAACCAAATTAGGTTA-GTTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
* *
20920790 TAATTAAATTAGATTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
20920819 TAATCAAATTAGGTTA-GGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
20920847 TAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
20920876 TAATCAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
20920905 TAATCAAATTAGGTTAGGGTTANGGTT
1 TAATCAAATTAGGTTAGGGTTAGGGTT
20920932 AATGTTAGGG
Statistics
Matches: 394, Mismatches: 25, Indels: 44
0.85 0.05 0.10
Matches are distributed among these distances:
27 36 0.09
28 104 0.26
29 218 0.55
30 1 0.00
32 1 0.00
33 1 0.00
35 6 0.02
37 1 0.00
38 5 0.01
40 2 0.01
42 1 0.00
44 18 0.05
ACGTcount: A:0.30, C:0.03, G:0.25, T:0.43
Consensus pattern (29 bp):
TAATCAAATTAGGTTAGGGTTAGGGTTTT
Found at i:20920518 original size:28 final size:29
Alignment explanation
Indices: 20920462--20921002 Score: 529
Period size: 29 Copynumber: 17.9 Consensus size: 29
20920452 AATATCCATC
20920462 TAATTAAATTAGGTTAAGGTTAGGGTTTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
*
20920491 TAATCAAATTAGGTT-AGGTTAGGGTTTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
20920519 TAATTAAATTAGGTTTAATCAAATTAGGTTAGGGTTAGGGTTTT
1 TAATTAAATTAGG--T--T---A--AGGTTA--G----GGTTTT
* * *
20920563 TAATCAAATTAGGTTAGGGTTAGAGTTTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
*
20920592 TAATCAAATTAGGTT-AGGTTAGGG-TTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
*
20920619 TAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
* * *
20920648 TAATCAAATTAGGTTAGGGTTAGAGTTTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
*
20920677 TAATCAAATTAGGTT-AGGTTAGGG-TTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
*
20920704 TAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
* * *
20920733 TAATCAAATTAGGTTAGGGTTAAGGTTTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
** *
20920762 TAACCAAATTAGGTT-AGTTTAGGGTTTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
* *
20920790 TAATTAAATTAGATTAGGGTTAGGGTTTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
*
20920819 TAATCAAATTAGGTT-AGGTTAGGGTTTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
*
20920847 TAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
* *
20920876 TAATCAAATTAGGTTAGGGTTAGGGTTTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
* *
20920905 TAATCAAATTAGGTTAGGGTTANGGTTAATGTTAGGGTTTT
1 TAATTAAATTAGGTTAAGGTTA-GG-----G------TTTT
* *
20920946 TAATTAAATTAGGTTAGGGTTAAGGTTTT
1 TAATTAAATTAGGTTAAGGTTAGGGTTTT
*
20920975 TAATTAAATTAGGTTAGGGTTTAGGGTT
1 TAATTAAATTAGGTTAAGG-TTAGGGTT
20921003 AAATTAAGTT
Statistics
Matches: 442, Mismatches: 35, Indels: 69
0.81 0.06 0.13
Matches are distributed among these distances:
27 34 0.08
28 103 0.23
29 232 0.52
30 10 0.02
32 1 0.00
33 1 0.00
35 7 0.02
37 1 0.00
38 6 0.01
40 3 0.01
41 25 0.06
42 1 0.00
44 18 0.04
ACGTcount: A:0.29, C:0.02, G:0.25, T:0.43
Consensus pattern (29 bp):
TAATTAAATTAGGTTAAGGTTAGGGTTTT
Found at i:20920530 original size:57 final size:58
Alignment explanation
Indices: 20920462--20920931 Score: 612
Period size: 57 Copynumber: 8.0 Consensus size: 58
20920452 AATATCCATC
*
20920462 TAATTAAATTAGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTA-GGTTAGGGTTTT
1 TAATCAAATTAGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTT
*
20920519 TAATTAAATTAGGTTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTT
1 TAATCAAATTAGG----------TTA----A-GGTTAGGGTTTTTAATCAAATTAGGTTAGGGTT
*
20920584 AGAGTTTT
51 AGGGTTTT
*
20920592 TAATCAAATTAGGTT-AGGTTAGGG-TTTTAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTT
* *
20920648 TAATCAAATTAGGTTAGGGTTAGAGTTTTTAATCAAATTAGGTTA-GGTTAGGG-TTT
1 TAATCAAATTAGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTT
* * *
20920704 TAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAAGGTTTT
1 TAATCAAATTAGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTT
* * * *
20920762 TAACCAAATTAGGTT-AGTTTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTT
*
20920819 TAATCAAATTAGGTT-AGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTT
* *
20920876 TAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTANGGTT
1 TAATCAAATTAGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
20920932 AATGTTAGGG
Statistics
Matches: 369, Mismatches: 23, Indels: 41
0.85 0.05 0.09
Matches are distributed among these distances:
56 91 0.25
57 149 0.40
58 72 0.20
63 2 0.01
67 3 0.01
71 1 0.00
72 28 0.08
73 23 0.06
ACGTcount: A:0.30, C:0.03, G:0.25, T:0.43
Consensus pattern (58 bp):
TAATCAAATTAGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTT
Found at i:20920537 original size:15 final size:15
Alignment explanation
Indices: 20920517--20920548 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
20920507 GGTTAGGGTT
*
20920517 TTTAATTAAATTAGG
1 TTTAATCAAATTAGG
20920532 TTTAATCAAATTAGG
1 TTTAATCAAATTAGG
20920547 TT
1 TT
20920549 AGGGTTAGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (15 bp):
TTTAATCAAATTAGG
Found at i:20920537 original size:43 final size:44
Alignment explanation
Indices: 20920489--20920577 Score: 162
Period size: 44 Copynumber: 2.0 Consensus size: 44
20920479 GGTTAGGGTT
*
20920489 TTTAATCAAATTAGGTTA-GGTTAGGGTTTTTAATTAAATTAGG
1 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGG
20920532 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGG
1 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGG
20920576 TT
1 TT
20920578 AGGGTTAGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 18 0.41
44 26 0.59
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.44
Consensus pattern (44 bp):
TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGG
Found at i:20920628 original size:85 final size:86
Alignment explanation
Indices: 20920532--20921002 Score: 689
Period size: 85 Copynumber: 5.3 Consensus size: 86
20920522 TTAAATTAGG
*
20920532 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGAGTTTTTAATC
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGAGTTTTTAATC
20920597 AAATTAGGTTAGGTTAGGG-T
66 AAATTAGGTTAGGTTAGGGTT
20920617 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGAGTTTTTAATC
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGAGTTTTTAATC
20920682 AAATTAGGTTAGGTTAGGG-T
66 AAATTAGGTTAGGTTAGGGTT
*
20920702 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTA-AGGTTTTTAAC
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGA-GTTTTTAAT
*
20920766 CAAATTAGGTTAGTTTAGGGTT
65 CAAATTAGGTTAGGTTAGGGTT
* * *
20920788 TTTAATTAAATTAGATTAGGGTTAGGGTTTTTAATCAAATTAGGTTA-GGTTAGGGTTTTTAATT
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGAGTTTTTAATC
20920852 AAATTAGGTTAGGGTTAGGGTT
66 AAATTAGGTTA-GGTTAGGGTT
*
20920874 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTANGGTTAATGTTA
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTA--G----GGTT-A-G--A
* *
20920939 GGGTTTTTAATTAAATTAGGTTAGGGTTAAGGTT
56 --GTTTTTAATCAAATTAGGTTA-GGTTAGGGTT
20920973 TTTAATTAAATTAGGTTAGGGTTTAGGGTT
1 TTTAATTAAATTAGGTTAGGG-TTAGGGTT
20921003 AAATTAAGTT
Statistics
Matches: 355, Mismatches: 13, Indels: 21
0.91 0.03 0.05
Matches are distributed among these distances:
84 1 0.00
85 188 0.53
86 101 0.28
93 4 0.01
94 1 0.00
95 1 0.00
99 51 0.14
100 8 0.02
ACGTcount: A:0.29, C:0.02, G:0.26, T:0.43
Consensus pattern (86 bp):
TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGAGTTTTTAATC
AAATTAGGTTAGGTTAGGGTT
Found at i:20920734 original size:114 final size:115
Alignment explanation
Indices: 20920532--20921002 Score: 680
Period size: 114 Copynumber: 4.0 Consensus size: 115
20920522 TTAAATTAGG
*
20920532 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGAGTTTTTAATC
1 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATC
20920597 AAATTAGGTTAGGTTAGGG-TTTTAATTAAATTAGGTTAGGGTTAGGGTT
66 AAATTAGGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTT
* *
20920646 TTTAATCAAATTAGGTTAGGGTTAGAGTTTTTAATCAAATTAGGTTA-GGTTAGGG-TTTTAATT
1 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATC
* *
20920709 AAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAAGGTT
66 AAATTAGGTTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTT
* * * *
20920760 TTTAACCAAATTAGGTTA-GTTTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTTAATC
1 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATC
20920824 AAATTAGGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTT
66 AAATTAGGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTT
20920874 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTANGGTTAATGTTA
1 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATC-AA--A--TTA-GGTTA-GG-----GTTA
* *
20920939 GGGTTTTTAATTAAATTAGGTTAGGGTTAAGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTT
54 GGGTTTTTAATCAAATTAGGTTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGG-TTAGGGTT
20921003 AAATTAAGTT
Statistics
Matches: 319, Mismatches: 19, Indels: 23
0.88 0.05 0.06
Matches are distributed among these distances:
112 18 0.06
113 39 0.12
114 153 0.48
115 33 0.10
116 2 0.01
118 1 0.00
120 3 0.01
121 4 0.01
122 2 0.01
127 26 0.08
128 30 0.09
129 8 0.03
ACGTcount: A:0.29, C:0.02, G:0.26, T:0.43
Consensus pattern (115 bp):
TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATC
AAATTAGGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTT
Found at i:20920932 original size:41 final size:41
Alignment explanation
Indices: 20920886--20920972 Score: 138
Period size: 41 Copynumber: 2.1 Consensus size: 41
20920876 TAATCAAATT
*
20920886 AGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTA
1 AGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTA
* * *
20920927 NGGTTAATGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA
1 AGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTA
20920968 AGGTT
1 AGGTT
20920973 TTTAATTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.26, C:0.01, G:0.30, T:0.41
Consensus pattern (41 bp):
AGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTA
Found at i:20920939 original size:70 final size:74
Alignment explanation
Indices: 20920865--20921022 Score: 243
Period size: 70 Copynumber: 2.2 Consensus size: 74
20920855 TTAGGTTAGG
* *
20920865 GTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGG-TTANG
1 GTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAAGGTTTTTAATCAAATTAGGTTAGGGTTTAGG
20920929 GTT-AA-T-
66 GTTAAATTA
* *
20920935 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAAGGTTTTTAATTAAATTAGGTTAGGGTTTAGG
1 GTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAAGGTTTTTAATCAAATTAGGTTAGGGTTTAGG
20921000 GTTAAATTAA
66 GTTAAATT-A
20921010 GTTAGGGTTTTTA
1 GTTAGGGTTTTTA
20921023 TTACATCAAA
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
70 56 0.71
71 7 0.09
72 2 0.03
73 1 0.01
75 13 0.16
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.44
Consensus pattern (74 bp):
GTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAAGGTTTTTAATCAAATTAGGTTAGGGTTTAGG
GTTAAATTA
Found at i:20921018 original size:29 final size:29
Alignment explanation
Indices: 20920947--20921015 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
20920937 TAGGGTTTTT
* *
20920947 AATTAAATTAGGTTAGGGTTAAGGTTTTT
1 AATTAAATTAGGTTAGGGTTAAGGTGTTA
*
20920976 AATTAAATTAGGTTAGGGTTTAGG-GTTA
1 AATTAAATTAGGTTAGGGTTAAGGTGTTA
*
20921004 AATTAAGTTAGG
1 AATTAAATTAGG
20921016 GTTTTTATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 13 0.36
29 23 0.64
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (29 bp):
AATTAAATTAGGTTAGGGTTAAGGTGTTA
Found at i:20921232 original size:21 final size:21
Alignment explanation
Indices: 20921206--20921251 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
20921196 GGCGGTTGTT
20921206 GTTCCTCCGCTAGGGATTCTG
1 GTTCCTCCGCTAGGGATTCTG
*
20921227 GTTCCTCCGCTGGGGATTCTG
1 GTTCCTCCGCTAGGGATTCTG
20921248 GTTC
1 GTTC
20921252 TTTCGATTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.07, C:0.28, G:0.30, T:0.35
Consensus pattern (21 bp):
GTTCCTCCGCTAGGGATTCTG
Found at i:20921540 original size:18 final size:18
Alignment explanation
Indices: 20921517--20921551 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
20921507 TAGAAAATGA
*
20921517 TACATATAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
20921535 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
20921552 AAATACACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:20923417 original size:22 final size:22
Alignment explanation
Indices: 20923392--20923447 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
20923382 AAATATGGAT
20923392 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
20923414 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
20923436 TTGAGAGGAATT
1 TTGAGA-GAATT
20923448 GAGAGGAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 28 0.85
23 5 0.15
ACGTcount: A:0.39, C:0.00, G:0.32, T:0.29
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:20923464 original size:12 final size:11
Alignment explanation
Indices: 20923408--20923464 Score: 57
Period size: 10 Copynumber: 5.2 Consensus size: 11
20923398 GAATTTTGGA
20923408 AGGAAATTGAG
1 AGGAAATTGAG
*
20923419 A-GAATTTTG-G
1 AGGAA-ATTGAG
20923429 AAGGAAATTGAG
1 -AGGAAATTGAG
20923441 AGG-AATTGAG
1 AGGAAATTGAG
20923451 AGGAAATATGAG
1 AGGAAAT-TGAG
20923463 AG
1 AG
20923465 AGGATTTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
10 14 0.37
11 14 0.37
12 10 0.26
ACGTcount: A:0.44, C:0.00, G:0.35, T:0.21
Consensus pattern (11 bp):
AGGAAATTGAG
Found at i:20923725 original size:12 final size:11
Alignment explanation
Indices: 20923691--20923725 Score: 54
Period size: 10 Copynumber: 3.2 Consensus size: 11
20923681 GAATTTTGGA
20923691 AGGAAATTGAG
1 AGGAAATTGAG
20923702 AGG-AATTGAG
1 AGGAAATTGAG
20923712 AGGAAATATGAG
1 AGGAAAT-TGAG
20923724 AG
1 AG
20923726 AGGATTTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.45
11 6 0.27
12 6 0.27
ACGTcount: A:0.46, C:0.00, G:0.37, T:0.17
Consensus pattern (11 bp):
AGGAAATTGAG
Found at i:20924473 original size:17 final size:18
Alignment explanation
Indices: 20924453--20924489 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
20924443 TTTATTTTAA
20924453 TTAATATTATTATAT-TT
1 TTAATATTATTATATATT
20924470 TTAATATTATTATATATT
1 TTAATATTATTATATATT
20924488 TT
1 TT
20924490 TAAATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTAATATTATTATATATT
Found at i:20924481 original size:26 final size:26
Alignment explanation
Indices: 20924429--20924498 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
20924419 ATGGGAAGAA
* *
20924429 AATATTATTATGTTTTTATTTTAATT
1 AATATTATTATATTTTTATATTAATT
20924455 AATATTATTATATTTTTAATATT-ATT
1 AATATTATTATATTTTT-ATATTAATT
* *
20924481 ATATATTTTTAAATTTTT
1 A-ATATTATTATATTTTT
20924499 TATGTTTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 20 0.53
27 18 0.47
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (26 bp):
AATATTATTATATTTTTATATTAATT
Found at i:20924501 original size:19 final size:19
Alignment explanation
Indices: 20924453--20924492 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
20924443 TTTATTTTAA
20924453 TTAATATTA-T-TATATTT
1 TTAATATTATTATATATTT
20924470 TTAATATTATTATATATTT
1 TTAATATTATTATATATTT
20924489 TTAA
1 TTAA
20924493 ATTTTTTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 9 0.43
18 1 0.05
19 11 0.52
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTAATATTATTATATATTT
Found at i:20926425 original size:30 final size:30
Alignment explanation
Indices: 20926352--20926426 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 30
20926342 GAACAACATG
* **
20926352 AAGATGAAGATAACGCTAGAGGTGAAGATG
1 AAGATGAAGATAATGCTAGAGGTGAAGACA
* * *
20926382 GAGATGAAGATAATGTTGGAGGTGAAGACA
1 AAGATGAAGATAATGCTAGAGGTGAAGACA
20926412 AAGATGAAGATAATG
1 AAGATGAAGATAATG
20926427 ATAATGATGA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.44, C:0.04, G:0.33, T:0.19
Consensus pattern (30 bp):
AAGATGAAGATAATGCTAGAGGTGAAGACA
Found at i:20927641 original size:13 final size:13
Alignment explanation
Indices: 20927623--20927647 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20927613 ATTTTTAATA
20927623 TTATTTTGTGTGT
1 TTATTTTGTGTGT
20927636 TTATTTTGTGTG
1 TTATTTTGTGTG
20927648 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:20929427 original size:41 final size:40
Alignment explanation
Indices: 20929397--20929542 Score: 136
Period size: 41 Copynumber: 3.6 Consensus size: 40
20929387 GGTTATGTAC
20929397 CTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTACG
1 CTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTACG
* *
20929437 TCTAGCAGGCTTAATGCCGGTG-A-TACATTTCAGACTATATG
1 -CTAGCAGGCTTAATGCCGGTGAAGTA-A-TTCAGACTTTACG
* * * * *
20929478 TCTAGCAGGC-TAAGTGCCGGTGTACTAAATCAGGCTTTAAG
1 -CTAGCAGGCTTAA-TGCCGGTGAAGTAATTCAGACTTTACG
* *
20929519 CCTAGCAGGCTAAATGCCAGTGAA
1 -CTAGCAGGCTTAATGCCGGTGAA
20929543 TCTGTTTAAA
Statistics
Matches: 89, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
39 2 0.02
40 5 0.06
41 76 0.85
42 4 0.04
43 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27
Consensus pattern (40 bp):
CTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTACG
Found at i:20930250 original size:17 final size:17
Alignment explanation
Indices: 20930217--20930251 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
20930207 GATTAAAAGG
20930217 TTATAATATTTATATAT
1 TTATAATATTTATATAT
20930234 TTATATATATTTA-ATAT
1 TTATA-ATATTTATATAT
20930251 T
1 T
20930252 GCGGTAGACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTATAATATTTATATAT
Found at i:20934024 original size:288 final size:290
Alignment explanation
Indices: 20933489--20934048 Score: 849
Period size: 288 Copynumber: 1.9 Consensus size: 290
20933479 GTAAAATATC
* * * *
20933489 ATTTTGGATTGTGGTTTGGGGTTTTTGGATTTGGGTTTTATGCATGTATTATTGAAACACATTGA
1 ATTTTGGACTGTGGTATGGGGTTTTTGGATTTGGGTTTTATGCATGCATTATTCAAACACATTGA
* *
20933554 TTATATATTTTAACCAGAAAATGCATGTTACTCGACCTAATTAAAATCTGACATGAATAGTATTT
66 TTATATATGTTAACCAGAAAATGCATGTTACACGACCTAATTAAAATCTGACATGAATAGTATTT
* * * * * **
20933619 TTCTCTTACTTTGAAAGATAACGAAATTTTGTAAAACTAAGTGACAAACAACGGGTTTCTAAAAA
131 TTCACTTACTTTGAAAGAAAACAAAATTTTGCAAAACAAAGCAACAAACAACGGGTTTCTAAAAA
* *
20933684 CCTCACTATCAATAATAAAAATGAGGCTTAAGAATAGATGGCTCAATAAATGAATATTTTTCAAA
196 CATCACTATCAATAATAAAAATGAGACTTAAGAATAGATGGCTCAATAAATGAATATTTTTCAAA
20933749 CTAACTCAAGTGCAACTGTAGTTTTCCAAA
261 CTAACTCAAGTGCAACTGTAGTTTTCCAAA
* ***
20933779 ATTTTGGACTGTGGTAT-GGGTTTTTGGATTTGGGTTTTATGCATGCATTATTCTAACTTTTTGA
1 ATTTTGGACTGTGGTATGGGGTTTTTGGATTTGGGTTTTATGCATGCATTATTCAAACACATTGA
* *
20933843 TTATTTATGTTAATC-GAAAATGCATGTTACACGACCTAATTAAAATCTGACATGAATAGTATTT
66 TTATATATGTTAACCAGAAAATGCATGTTACACGACCTAATTAAAATCTGACATGAATAGTATTT
* *
20933907 TTGCAC-TA-TTTAGAAAGAAAACAAAATTTTGCAAAACAAAGCAACAAACAACGGGTTTTTATA
131 TT-CACTTACTTT-GAAAGAAAACAAAATTTTGCAAAACAAAGCAACAAACAACGGGTTTCTAAA
* *
20933970 AACATCACTATCAATAATAAAAATGAGACTTCAGAATAGATGGTTCAATAAATGAATATTTTTCA
194 AACATCACTATCAATAATAAAAATGAGACTTAAGAATAGATGGCTCAATAAATGAATATTTTTCA
20934035 AACTAACTCAAGTG
259 AACTAACTCAAGTG
20934049 TGACCACAGT
Statistics
Matches: 243, Mismatches: 25, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
287 3 0.01
288 170 0.70
289 55 0.23
290 15 0.06
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (290 bp):
ATTTTGGACTGTGGTATGGGGTTTTTGGATTTGGGTTTTATGCATGCATTATTCAAACACATTGA
TTATATATGTTAACCAGAAAATGCATGTTACACGACCTAATTAAAATCTGACATGAATAGTATTT
TTCACTTACTTTGAAAGAAAACAAAATTTTGCAAAACAAAGCAACAAACAACGGGTTTCTAAAAA
CATCACTATCAATAATAAAAATGAGACTTAAGAATAGATGGCTCAATAAATGAATATTTTTCAAA
CTAACTCAAGTGCAACTGTAGTTTTCCAAA
Found at i:20938100 original size:16 final size:16
Alignment explanation
Indices: 20938062--20938093 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
20938052 TGATTGAAAG
*
20938062 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
20938078 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
20938094 GCAAAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:20938243 original size:51 final size:50
Alignment explanation
Indices: 20938153--20938292 Score: 149
Period size: 51 Copynumber: 2.8 Consensus size: 50
20938143 TGATAGGTCG
**
20938153 CATGTGTAGTACTATGTGC-AGCCTACTATACGTACCGGATAGCT-TCAATCA
1 CATGTGTAGTACTATGTGCAAG-CTACTATGTGTACCGGATAG-TAT-AATCA
* * * **
20938204 CGTGTGTCGTACTATGTGCAAGCTACTATGTGTATCGGATAGTGATTGTCA
1 CATGTGTAGTACTATGTGCAAGCTACTATGTGTACCGGATAGT-ATAATCA
* *
20938255 CATGTGTAGTACTATGTGCAGGCTACTATGTGAACCGG
1 CATGTGTAGTACTATGTGCAAGCTACTATGTGTACCGG
20938293 TATCATTAAT
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
50 1 0.01
51 70 0.95
52 3 0.04
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (50 bp):
CATGTGTAGTACTATGTGCAAGCTACTATGTGTACCGGATAGTATAATCA
Found at i:20938379 original size:46 final size:43
Alignment explanation
Indices: 20938288--20938372 Score: 107
Period size: 46 Copynumber: 1.9 Consensus size: 43
20938278 TACTATGTGA
*
20938288 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTGATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGATCCC
* * *
20938331 ACCGGATATCATTGATTACAAAGGGTGGTTGTTGTGTGCTGA
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATGTGCTGA
20938373 ATCCACCATG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
43 5 0.14
44 11 0.31
45 2 0.06
46 17 0.49
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGATCCC
Found at i:20938548 original size:16 final size:16
Alignment explanation
Indices: 20938510--20938541 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
20938500 TGATTGAAAG
*
20938510 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
20938526 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
20938542 GCAAAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:20941897 original size:16 final size:16
Alignment explanation
Indices: 20941854--20941904 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
20941844 TATTTGAATG
*
20941854 TTTATGATATGATTGA
1 TTTATGATATAATTGA
**
20941870 -TTATTTTAATAATTGA
1 TTTATGAT-ATAATTGA
20941886 TTTATGATATAATTGA
1 TTTATGATATAATTGA
20941902 TTT
1 TTT
20941905 GTAATTTTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 5 0.18
16 18 0.64
17 5 0.18
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (16 bp):
TTTATGATATAATTGA
Found at i:20943563 original size:27 final size:26
Alignment explanation
Indices: 20943524--20943856 Score: 294
Period size: 27 Copynumber: 12.3 Consensus size: 26
20943514 GTAATGAGCT
*
20943524 TAAAATGATCGAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTC-AAGGG
* *
20943551 TAAAATAACCGAAATACCCTCAAAAGG
1 TAAAATGACCGAAATACCCTC-AAGGG
* * * *
20943578 TAAAATTATCGAAATACCCCCAAATGG
1 TAAAATGACCGAAATACCCTC-AAGGG
*
20943605 TAAAATGACCGAAATACCCTTGAAGGG
1 TAAAATGACCGAAATACCC-TCAAGGG
* *
20943632 TAAAATGACTGAAATACCCTCGAAGGA
1 TAAAATGACCGAAATACCCTC-AAGGG
20943659 TAAAATGACCGAAATACCCTCAAAGGG
1 TAAAATGACCGAAATACCCTC-AAGGG
* *
20943686 TAAAATGACCGAAATACCCCCATAAGG
1 TAAAATGACCGAAATACCCTCA-AGGG
*** *
20943713 TAAAATGATTAAAATATCCCT-ATAGAG
1 TAAAATGACCGAAATA-CCCTCA-AGGG
* *
20943740 TAAAATAACTGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCA-AGGG
*
20943767 TAAAATGACC-AAATTACCCCCATAGGG
1 TAAAATGACCGAAA-TACCCTCA-AGGG
20943794 TAAAATGACCGAAATACTCC-CATAGGG
1 TAAAATGACCGAAATAC-CCTCA-AGGG
* * * * *
20943821 TAAAATAATCAAAATACCCCCATAAGG
1 TAAAATGACCGAAATACCCTCA-AGGG
20943848 TAAAATGAC
1 TAAAATGAC
20943857 TATTATACCC
Statistics
Matches: 257, Mismatches: 40, Indels: 18
0.82 0.13 0.06
Matches are distributed among these distances:
26 11 0.04
27 238 0.93
28 8 0.03
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.19
Consensus pattern (26 bp):
TAAAATGACCGAAATACCCTCAAGGG
Found at i:20943867 original size:81 final size:82
Alignment explanation
Indices: 20943524--20943856 Score: 328
Period size: 81 Copynumber: 4.1 Consensus size: 82
20943514 GTAATGAGCT
* * * * * *
20943524 TAAAATGATCGAAATACCCTCGA-AGGGTAAAATAACCGAAATACCCTC-AAAAGGTAAAATTAT
1 TAAAATGACCGAAATACCC-CCATAGGGTAAAATGACCGAAATACCCTCGATAGGGTAAAATAAT
*
20943587 CGAAATACCCCCAAATGG
65 CGAAATACCCCCAAAGGG
** * * * *
20943605 TAAAATGACCGAAATACCCTTGA-AGGGTAAAATGACTGAAATACCCTCGA-AGGATAAAATGAC
1 TAAAATGACCGAAATACCC-CCATAGGGTAAAATGACCGAAATACCCTCGATAGGGTAAAATAAT
*
20943668 CGAAATACCCTCAAAGGG
65 CGAAATACCCCCAAAGGG
* *** *
20943686 TAAAATGACCGAAATACCCCCATAAGGTAAAATGATTAAAATATCCCT--ATAGAGTAAAATAA-
1 TAAAATGACCGAAATACCCCCATAGGGTAAAATGACCGAAATA-CCCTCGATAGGGTAAAATAAT
* *
20943748 CTGAAATACCCTCATAGGG
65 C-GAAATACCCCCAAAGGG
20943767 TAAAATGACC-AAATTACCCCCATAGGGTAAAATGACCGAAATACTCC-C-ATAGGGTAAAATAA
1 TAAAATGACCGAAA-TACCCCCATAGGGTAAAATGACCGAAATAC-CCTCGATAGGGTAAAATAA
*
20943829 TCAAAATACCCCCATAA-GG
64 TCGAAATACCCCCA-AAGGG
20943848 TAAAATGAC
1 TAAAATGAC
20943857 TATTATACCC
Statistics
Matches: 215, Mismatches: 27, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
80 7 0.03
81 201 0.93
82 7 0.03
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.19
Consensus pattern (82 bp):
TAAAATGACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCGATAGGGTAAAATAATC
GAAATACCCCCAAAGGG
Found at i:20944226 original size:28 final size:28
Alignment explanation
Indices: 20944186--20944262 Score: 136
Period size: 28 Copynumber: 2.8 Consensus size: 28
20944176 GTACCGATAT
*
20944186 TGTATTAGGCTAAGGTCCACATTGTTAC
1 TGTATTAGGCTAAGGCCCACATTGTTAC
20944214 TGTATTAGGCTAAGGCCCACATTGTTAC
1 TGTATTAGGCTAAGGCCCACATTGTTAC
*
20944242 TGTATTGGGCTAAGGCCCACA
1 TGTATTAGGCTAAGGCCCACA
20944263 CTATACTGTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (28 bp):
TGTATTAGGCTAAGGCCCACATTGTTAC
Found at i:20945486 original size:18 final size:20
Alignment explanation
Indices: 20945455--20945491 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
20945445 TTGGGGGGTC
20945455 AAATTATGATTTC-ACTTTT
1 AAATTATGATTTCAACTTTT
20945474 AAATTAT-ATTTCAACTTT
1 AAATTATGATTTCAACTTT
20945492 GGATTTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.35, C:0.11, G:0.03, T:0.51
Consensus pattern (20 bp):
AAATTATGATTTCAACTTTT
Found at i:20946036 original size:15 final size:15
Alignment explanation
Indices: 20946016--20946049 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
20946006 TACCAAAAGG
20946016 GTATTTACAACAATT
1 GTATTTACAACAATT
* *
20946031 GTATTTACACCATTT
1 GTATTTACAACAATT
20946046 GTAT
1 GTAT
20946050 ATTCAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.15, G:0.09, T:0.44
Consensus pattern (15 bp):
GTATTTACAACAATT
Found at i:20947807 original size:17 final size:17
Alignment explanation
Indices: 20947780--20947822 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
20947770 AAAATGAAAA
20947780 CAAAAACCAAT-TTTGATT
1 CAAAAA-CAATATTT-ATT
20947798 CAAAAACAATATTTATT
1 CAAAAACAATATTTATT
*
20947815 TAAAAACA
1 CAAAAACA
20947823 TTTCATATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.53, C:0.14, G:0.02, T:0.30
Consensus pattern (17 bp):
CAAAAACAATATTTATT
Found at i:20960800 original size:42 final size:42
Alignment explanation
Indices: 20960761--20960841 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
20960751 TGAGTTTCAG
* *
20960761 TTCAGCTCTTATGAGCTTTTGTTTAACCCTTATGGGTTTCCA
1 TTCAGCTCCTACGAGCTTTTGTTTAACCCTTATGGGTTTCCA
* * *
20960803 TTCAGCTCCTACGTGCTTTTGTTCAGCCCTTATGGGTTT
1 TTCAGCTCCTACGAGCTTTTGTTTAACCCTTATGGGTTT
20960842 TTGTTTAGCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.14, C:0.23, G:0.19, T:0.44
Consensus pattern (42 bp):
TTCAGCTCCTACGAGCTTTTGTTTAACCCTTATGGGTTTCCA
Found at i:20960843 original size:21 final size:21
Alignment explanation
Indices: 20960760--20960856 Score: 63
Period size: 21 Copynumber: 4.6 Consensus size: 21
20960750 ATGAGTTTCA
* *
20960760 GTTCAGCTCTTATGAGCTTTT
1 GTTCAGCCCTTATGGGCTTTT
* * *
20960781 GTTTAACCCTTATGGG-TTTCC
1 GTTCAGCCCTTATGGGCTTT-T
* * *
20960802 ATTCAGCTCC-TACGTGCTTTT
1 GTTCAGC-CCTTATGGGCTTTT
*
20960823 GTTCAGCCCTTATGGGTTTTT
1 GTTCAGCCCTTATGGGCTTTT
* *
20960844 GTTTAGCACTTAT
1 GTTCAGCCCTTAT
20960857 TACTTTTGTG
Statistics
Matches: 55, Mismatches: 17, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
20 5 0.09
21 45 0.82
22 5 0.09
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.45
Consensus pattern (21 bp):
GTTCAGCCCTTATGGGCTTTT
Found at i:20984747 original size:18 final size:19
Alignment explanation
Indices: 20984724--20984760 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
20984714 TCATGAAACT
20984724 AAGTTTAACATTT-TAATC
1 AAGTTTAACATTTATAATC
*
20984742 AAGTTTAATATTTATAATC
1 AAGTTTAACATTTATAATC
20984761 TATATAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (19 bp):
AAGTTTAACATTTATAATC
Found at i:20988669 original size:2 final size:2
Alignment explanation
Indices: 20988662--20988698 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
20988652 ACTATGCTTA
20988662 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20988699 AACATTGGCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:21002659 original size:19 final size:19
Alignment explanation
Indices: 21002637--21002680 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
21002627 CAACCCATAT
21002637 TTTTCA-TC-ATTTCACATTA
1 TTTTCATTCTATTTCAC--TA
21002656 TTTTCATTCTATTTCACTA
1 TTTTCATTCTATTTCACTA
21002675 TTTTCA
1 TTTTCA
21002681 CAAATAGATC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 14 0.61
20 2 0.09
21 7 0.30
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTTCATTCTATTTCACTA
Found at i:21010582 original size:996 final size:996
Alignment explanation
Indices: 21008650--21010646 Score: 3987
Period size: 996 Copynumber: 2.0 Consensus size: 996
21008640 GCAAGCCAAA
21008650 TCAAGCACCAATTCTTACACATCAAGACACACCATACCTAGGTTATTTCACATGGTTAAAATCAC
1 TCAAGCACCAATTCTTACACATCAAGACACACCATACCTAGGTTATTTCACATGGTTAAAATCAC
21008715 ATTCAAGGACACTGAAAGCATGCCACAAATCATCTATCCTACGTCTAACCACTATAACATCAAAT
66 ATTCAAGGACACTGAAAGCATGCCACAAATCATCTATCCTACGTCTAACCACTATAACATCAAAT
21008780 GGCACCACAATTCACATATCAAACCTTTATCCATTTCAACATCTCAAGTTCACTTAACATAAATC
131 GGCACCACAATTCACATATCAAACCTTTATCCATTTCAACATCTCAAGTTCACTTAACATAAATC
21008845 ATACACACCAAACAACCATTTCAATAGCATAGCATACAGCCATAATTTAACTACTTTAATTTAAA
196 ATACACACCAAACAACCATTTCAATAGCATAGCATACAGCCATAATTTAACTACTTTAATTTAAA
21008910 CAAGTACAATCCCCACATCACATATTTACACAATCATTTACAAACCAATAACAACAAGAGCATTT
261 CAAGTACAATCCCCACATCACATATTTACACAATCATTTACAAACCAATAACAACAAGAGCATTT
21008975 AAGCACAAATAAGCTTAGCACAAACTCAAAACAACTAAAGGACGAAGATAACATTTTAGCCCTAT
326 AAGCACAAATAAGCTTAGCACAAACTCAAAACAACTAAAGGACGAAGATAACATTTTAGCCCTAT
21009040 ACATGCCATTTATAACCATTTGCTAAATTAAACAAAAACTACCAAAATGATGGATGGATAGTGTG
391 ACATGCCATTTATAACCATTTGCTAAATTAAACAAAAACTACCAAAATGATGGATGGATAGTGTG
21009105 AAGATGTTCCGACGAGAATTCCAACTGAACAAGCTTTCTGACGATCTATAGAAAAGAAAACAACT
456 AAGATGTTCCGACGAGAATTCCAACTGAACAAGCTTTCTGACGATCTATAGAAAAGAAAACAACT
21009170 AAATAAGCAACTAGTGCTTAGTAAGTTCGTATAAAATTTAAACATAAACTTACCAATTTAACTCA
521 AAATAAGCAACTAGTGCTTAGTAAGTTCGTATAAAATTTAAACATAAACTTACCAATTTAACTCA
21009235 AATTATATAATTCATAAATGTTCCATTAGCATGCTCATATATTTAACAAATTCTATTTCTAGCCA
586 AATTATATAATTCATAAATGTTCCATTAGCATGCTCATATATTTAACAAATTCTATTTCTAGCCA
21009300 CCAAATTCAAATGGTTAGTGAACTTCTTCTACATATATAATAAATTCTAATATTCCAAGAAACAC
651 CCAAATTCAAATGGTTAGTGAACTTCTTCTACATATATAATAAATTCTAATATTCCAAGAAACAC
21009365 ATATTTGAAACTTATCTACTTATAAGCCATTCAACACTTTTCTAATGTGACATTTATACAACTTA
716 ATATTTGAAACTTATCTACTTATAAGCCATTCAACACTTTTCTAATGTGACATTTATACAACTTA
21009430 AAGCATATTCAAGTATTTTTCATTTTGTCCATCAATCATATAACTTACCATGAAATCATGTTAAC
781 AAGCATATTCAAGTATTTTTCATTTTGTCCATCAATCATATAACTTACCATGAAATCATGTTAAC
21009495 ATAGATGAAACCTTTAATACCTATTGAACCATATGAAACATCGTCAAATACTCTGGAAATGCTCA
846 ATAGATGAAACCTTTAATACCTATTGAACCATATGAAACATCGTCAAATACTCTGGAAATGCTCA
21009560 TACGAGCTGTGATTGTAACATTTAACCTTATATGCTCACACGAGCTATAAATTGGGCCTACTCAC
911 TACGAGCTGTGATTGTAACATTTAACCTTATATGCTCACACGAGCTATAAATTGGGCCTACTCAC
21009625 AAGAGCTGTGGGTTGGGATGT
976 AAGAGCTGTGGGTTGGGATGT
21009646 TCAAGCACCAATTCTTACACATCAAGACACACCATACCTAGGTTATTTCACATGGTTAAAATCAC
1 TCAAGCACCAATTCTTACACATCAAGACACACCATACCTAGGTTATTTCACATGGTTAAAATCAC
21009711 ATTCAAGGACACTGAAAGCATGCCACAAATCATCTATCCTACGTCTAACCACTATAACATCAAAT
66 ATTCAAGGACACTGAAAGCATGCCACAAATCATCTATCCTACGTCTAACCACTATAACATCAAAT
21009776 GGCACCACAATTCACATATCAAACCTTTATCCATTTCAACATCTCAAGTTCACTTAACATAAATC
131 GGCACCACAATTCACATATCAAACCTTTATCCATTTCAACATCTCAAGTTCACTTAACATAAATC
21009841 ATACACACCAAACAACCATTTCAATAGCATAGCATACAGCCATAATTTAACTACTTTAATTTAAA
196 ATACACACCAAACAACCATTTCAATAGCATAGCATACAGCCATAATTTAACTACTTTAATTTAAA
21009906 CAAGTACAATCCCCACATCACATATTTACACAATCATTTACAAACCAATAACAACAAGAGCATTT
261 CAAGTACAATCCCCACATCACATATTTACACAATCATTTACAAACCAATAACAACAAGAGCATTT
21009971 AAGCACAAATAAGCTTAGCACAAACTCAAAACAACTAAAGGACGAAGATAACATTTTAGCCCTAT
326 AAGCACAAATAAGCTTAGCACAAACTCAAAACAACTAAAGGACGAAGATAACATTTTAGCCCTAT
21010036 ACATGCCATTTATAACCATTTGCTAAATTAAACAAAAACTACCAAAATGATGGATGGATAGTGTG
391 ACATGCCATTTATAACCATTTGCTAAATTAAACAAAAACTACCAAAATGATGGATGGATAGTGTG
21010101 AAGATGTTCCGACGAGAATTCCAACTGAACAAGCTTTCTGACGATCTATAGAAAAGAAAACAACT
456 AAGATGTTCCGACGAGAATTCCAACTGAACAAGCTTTCTGACGATCTATAGAAAAGAAAACAACT
21010166 AAATAAGCAACTAGTGCTTAGTAAGTTCGTATAAAATTTAAACATAAACTTACCAATTTAACTCA
521 AAATAAGCAACTAGTGCTTAGTAAGTTCGTATAAAATTTAAACATAAACTTACCAATTTAACTCA
21010231 AATTATATAATTCATAAATGTTCCATTAGCATGCTCATATATTTAACAAATTCTATTTCTAGCCA
586 AATTATATAATTCATAAATGTTCCATTAGCATGCTCATATATTTAACAAATTCTATTTCTAGCCA
21010296 CCAAATTCAAATGGTTAGTGAACTTCTTCTACATATATAATAAATTCTAATATTCCAAGAAACAC
651 CCAAATTCAAATGGTTAGTGAACTTCTTCTACATATATAATAAATTCTAATATTCCAAGAAACAC
21010361 ATATTTGAAACTTATCTACTTATAAGCCATTCAACACTTTTCTAATGTGACATTTATACAACTTA
716 ATATTTGAAACTTATCTACTTATAAGCCATTCAACACTTTTCTAATGTGACATTTATACAACTTA
21010426 AAGCATATTCAAGTATTTTTCATTTTGTCCATCAATCATATAACTTACCATGAAATCATGTTAAC
781 AAGCATATTCAAGTATTTTTCATTTTGTCCATCAATCATATAACTTACCATGAAATCATGTTAAC
21010491 ATAGATGAAACCTTTAATACCTATTGAACCATATGAAACATCGTCAAATACTCTGGAAATGCTCA
846 ATAGATGAAACCTTTAATACCTATTGAACCATATGAAACATCGTCAAATACTCTGGAAATGCTCA
21010556 TACGAGCTGTGATTGTAACATTTAACCTTATATGCTCACACGAGCTATAAATTGGGCCTACTCAC
911 TACGAGCTGTGATTGTAACATTTAACCTTATATGCTCACACGAGCTATAAATTGGGCCTACTCAC
21010621 AAGAGCTGTGGGTTGGGATGT
976 AAGAGCTGTGGGTTGGGATGT
21010642 T-AAGC
1 TCAAGC
21010647 TACACGATGC
Statistics
Matches: 1001, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
995 4 0.00
996 997 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.29
Consensus pattern (996 bp):
TCAAGCACCAATTCTTACACATCAAGACACACCATACCTAGGTTATTTCACATGGTTAAAATCAC
ATTCAAGGACACTGAAAGCATGCCACAAATCATCTATCCTACGTCTAACCACTATAACATCAAAT
GGCACCACAATTCACATATCAAACCTTTATCCATTTCAACATCTCAAGTTCACTTAACATAAATC
ATACACACCAAACAACCATTTCAATAGCATAGCATACAGCCATAATTTAACTACTTTAATTTAAA
CAAGTACAATCCCCACATCACATATTTACACAATCATTTACAAACCAATAACAACAAGAGCATTT
AAGCACAAATAAGCTTAGCACAAACTCAAAACAACTAAAGGACGAAGATAACATTTTAGCCCTAT
ACATGCCATTTATAACCATTTGCTAAATTAAACAAAAACTACCAAAATGATGGATGGATAGTGTG
AAGATGTTCCGACGAGAATTCCAACTGAACAAGCTTTCTGACGATCTATAGAAAAGAAAACAACT
AAATAAGCAACTAGTGCTTAGTAAGTTCGTATAAAATTTAAACATAAACTTACCAATTTAACTCA
AATTATATAATTCATAAATGTTCCATTAGCATGCTCATATATTTAACAAATTCTATTTCTAGCCA
CCAAATTCAAATGGTTAGTGAACTTCTTCTACATATATAATAAATTCTAATATTCCAAGAAACAC
ATATTTGAAACTTATCTACTTATAAGCCATTCAACACTTTTCTAATGTGACATTTATACAACTTA
AAGCATATTCAAGTATTTTTCATTTTGTCCATCAATCATATAACTTACCATGAAATCATGTTAAC
ATAGATGAAACCTTTAATACCTATTGAACCATATGAAACATCGTCAAATACTCTGGAAATGCTCA
TACGAGCTGTGATTGTAACATTTAACCTTATATGCTCACACGAGCTATAAATTGGGCCTACTCAC
AAGAGCTGTGGGTTGGGATGT
Found at i:21024517 original size:22 final size:22
Alignment explanation
Indices: 21024492--21024542 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
21024482 GACAAGCCAC
* *
21024492 CACTGATTTGCAGATAAATTGT
1 CACTGATTTACAGATAAACTGT
21024514 CACTGATTTACAGATAAACTGT
1 CACTGATTTACAGATAAACTGT
*
21024536 CATTGAT
1 CACTGAT
21024543 AACACAGATG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (22 bp):
CACTGATTTACAGATAAACTGT
Found at i:21031844 original size:27 final size:27
Alignment explanation
Indices: 21031823--21031980 Score: 219
Period size: 27 Copynumber: 5.9 Consensus size: 27
21031813 AAAATGACTA
21031823 AAATACCCCCATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGATCG
*
21031850 AAATACCCCCATAGGGTAAAATTATCG
1 AAATACCCCCATAGGGTAAAATGATCG
*
21031877 AAATACCCCCATATGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGATCG
* * *
21031904 AAATACTCTCC-TAGGGTAAAATAACCG
1 AAATAC-CCCCATAGGGTAAAATGATCG
* *
21031931 AAATACCCTCATAGGGTAAAATGATTG
1 AAATACCCCCATAGGGTAAAATGATCG
**
21031958 AAATACCCTTATAGGGTAAAATG
1 AAATACCCCCATAGGGTAAAATG
21031981 TCTGTTATGG
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 2 0.02
27 111 0.96
28 3 0.03
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGATCG
Found at i:21032417 original size:28 final size:28
Alignment explanation
Indices: 21032385--21032593 Score: 307
Period size: 28 Copynumber: 7.5 Consensus size: 28
21032375 CTATATTGAG
*
21032385 TAAGGCCCACACTGATTCTGTATGGGGC
1 TAAGGCCCACACTGATTCTGTATTGGGC
* *
21032413 TAAGGCCCACACTG-TCACTGTATTGGAC
1 TAAGGCCCACACTGAT-TCTGTATTGGGC
21032441 TAAGGCCCACACTGATTCTGTATTGGGC
1 TAAGGCCCACACTGATTCTGTATTGGGC
* *
21032469 TAAGGCCTACACTAATTCTGTATTGGGC
1 TAAGGCCCACACTGATTCTGTATTGGGC
21032497 TAAGGCCCACACTGATTCTGTATTGGGC
1 TAAGGCCCACACTGATTCTGTATTGGGC
*
21032525 TAAAGCCCACACTG-TTACTGTATTGGGC
1 TAAGGCCCACACTGATT-CTGTATTGGGC
*
21032553 TAAGGACCACACTG-TTACTGTATTGGGC
1 TAAGGCCCACACTGATT-CTGTATTGGGC
21032581 TAAGGCCCACACT
1 TAAGGCCCACACT
21032594 ATACTGTCAC
Statistics
Matches: 165, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
27 3 0.02
28 161 0.98
29 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.27
Consensus pattern (28 bp):
TAAGGCCCACACTGATTCTGTATTGGGC
Found at i:21032507 original size:84 final size:82
Alignment explanation
Indices: 21032367--21032600 Score: 305
Period size: 84 Copynumber: 2.8 Consensus size: 82
21032357 TATTGCACTG
* * *
21032367 CACTGTTACTATATTGAG-TAAGGCCCACACTGATTCTGTATGGGGCTAAGGCCCACACTG-TCA
1 CACTGTTACTGTATTGGGCTAAGG-CCACACT-ATTCTGTATTGGGCTAAGGCCCACACTGAT-A
*
21032430 CTGTATTGGACTAAGGCCCA
63 CTGTATTGGACTAAAGCCCA
*
21032450 CACTGATT-CTGTATTGGGCTAAGGCCTACACTAATTCTGTATTGGGCTAAGGCCCACACTGATT
1 CACTG-TTACTGTATTGGGCTAAGGCC-ACACT-ATTCTGTATTGGGCTAAGGCCCACACTGATA
*
21032514 CTGTATTGGGCTAAAGCCCA
63 CTGTATTGGACTAAAGCCCA
*
21032534 CACTGTTACTGTATTGGGCTAAGGACCACACTGTTACTGTATTGGGCTAAGGCCCACACT-ATAC
1 CACTGTTACTGTATTGGGCTAAGG-CCACACTATT-CTGTATTGGGCTAAGGCCCACACTGATAC
21032598 TGT
64 TGT
21032601 CACTAAATAG
Statistics
Matches: 135, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
83 25 0.19
84 107 0.79
85 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (82 bp):
CACTGTTACTGTATTGGGCTAAGGCCACACTATTCTGTATTGGGCTAAGGCCCACACTGATACTG
TATTGGACTAAAGCCCA
Found at i:21061793 original size:14 final size:15
Alignment explanation
Indices: 21061770--21061802 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
21061760 AATTAAAGTA
21061770 TAAATAAAACTAA-T
1 TAAATAAAACTAACT
*
21061784 TAAATTAAACTAACT
1 TAAATAAAACTAACT
21061799 TAAA
1 TAAA
21061803 CTAACTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAATAAAACTAACT
Found at i:21062418 original size:27 final size:28
Alignment explanation
Indices: 21062384--21062440 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 28
21062374 CAGTAACAGT
*
21062384 ACAGTGCGGGCCTTAGCCCAA-AAAGTA
1 ACAGTGCGGGCCCTAGCCCAATAAAGTA
*
21062411 ACAGTGCGGGCCCTAGCCCAATATAGTA
1 ACAGTGCGGGCCCTAGCCCAATAAAGTA
21062439 AC
1 AC
21062441 CAGTACAGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.32, C:0.28, G:0.25, T:0.16
Consensus pattern (28 bp):
ACAGTGCGGGCCCTAGCCCAATAAAGTA
Found at i:21062783 original size:27 final size:27
Alignment explanation
Indices: 21062753--21062996 Score: 188
Period size: 27 Copynumber: 9.0 Consensus size: 27
21062743 ATATATATCA
* *
21062753 TACCCTTCGGGGGTATTTCATTCATCT
1 TACCCTTCGGGGGTATTTCAGTCATTT
* *
21062780 TACCC-TCTAGGGGTGTTT-AGGTCATTT
1 TACCCTTC-GGGGGTATTTCA-GTCATTT
*
21062807 TACCCTTCGGGGGTATTTCGGTCATTT
1 TACCCTTCGGGGGTATTTCAGTCATTT
* * *
21062834 TACCCTTAGAGGGTATTTCTGTCATTT
1 TACCCTTCGGGGGTATTTCAGTCATTT
* * **
21062861 TACCCTTTGAGGGTATTTTGGTCATTT
1 TACCCTTCGGGGGTATTTCAGTCATTT
** *
21062888 TACCCTTCAAGGATATTTC-GATCATTT
1 TACCCTTCGGGGGTATTTCAG-TCATTT
** * **
21062915 TACATTTCGAGGGTATTTTGGTCATTT
1 TACCCTTCGGGGGTATTTCAGTCATTT
* ** * *
21062942 TGCCCTTCAAGGGAATTTCGGTCATTT
1 TACCCTTCGGGGGTATTTCAGTCATTT
* * *
21062969 TACCTTTTGAGGGTATTTCAGTCATTT
1 TACCCTTCGGGGGTATTTCAGTCATTT
21062996 T
1 T
21062997 CCCACAAACT
Statistics
Matches: 177, Mismatches: 34, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
26 4 0.02
27 170 0.96
28 3 0.02
ACGTcount: A:0.17, C:0.19, G:0.20, T:0.43
Consensus pattern (27 bp):
TACCCTTCGGGGGTATTTCAGTCATTT
Found at i:21062837 original size:54 final size:54
Alignment explanation
Indices: 21062753--21062996 Score: 267
Period size: 54 Copynumber: 4.5 Consensus size: 54
21062743 ATATATATCA
* ** * * * *
21062753 TACCCTTCGGGGGTATTTCATTCATCTTACCC-TCTAGGGGTGTTTAGGTCATTT
1 TACCCTTCGAGGGTATTTCGGTCATTTTACCCTTC-AAGGGTATTTCGGTCATTT
* *
21062807 TACCCTTCGGGGGTATTTCGGTCATTTTACCCTT-AGAGGGTATTTCTGTCATTT
1 TACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCA-AGGGTATTTCGGTCATTT
* * * *
21062861 TACCCTTTGAGGGTATTTTGGTCATTTTACCCTTCAAGGATATTTCGATCATTT
1 TACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCAAGGGTATTTCGGTCATTT
** * * *
21062915 TACATTTCGAGGGTATTTTGGTCATTTTGCCCTTCAAGGGAATTTCGGTCATTT
1 TACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCAAGGGTATTTCGGTCATTT
* * *
21062969 TACCTTTTGAGGGTATTTCAGTCATTTT
1 TACCCTTCGAGGGTATTTCGGTCATTTT
21062997 CCCACAAACT
Statistics
Matches: 163, Mismatches: 24, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 160 0.98
55 2 0.01
ACGTcount: A:0.17, C:0.19, G:0.20, T:0.43
Consensus pattern (54 bp):
TACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCAAGGGTATTTCGGTCATTT
Found at i:21062864 original size:81 final size:80
Alignment explanation
Indices: 21062753--21062996 Score: 258
Period size: 81 Copynumber: 3.0 Consensus size: 80
21062743 ATATATATCA
* * * *
21062753 TACCCTTCGGGGGTATTTCAT-TCATCTTACCCTCTAGGGGTGTTTAGGTCATTTTACCCTTCGG
1 TACCCTTCGAGGGTATTTC-TGTCATTTTACCCT-TAGGGGTATTTAGGTCATTTTACCCTTCGA
21062817 GGGTATTTCGGTCATTT
64 GGGTATTTCGGTCATTT
* * * *
21062834 TACCCTTAGAGGGTATTTCTGTCATTTTACCCTTTGAGGGTATTTTGGTCATTTTACCCTTCAAG
1 TACCCTTCGAGGGTATTTCTGTCATTTTACCCTTAG-GGGTATTTAGGTCATTTTACCCTTCGAG
* *
21062899 GATATTTCGATCATTT
65 GGTATTTCGGTCATTT
** * * * * * *
21062915 TACATTTCGAGGGTATTT-TGGTCATTTTGCCCTTCAAGGGAATTTCGGTCATTTTACCTTTTGA
1 TACCCTTCGAGGGTATTTCT-GTCATTTTACCCTT-AGGGGTATTTAGGTCATTTTACCCTTCGA
*
21062979 GGGTATTTCAGTCATTT
64 GGGTATTTCGGTCATTT
21062996 T
1 T
21062997 CCCACAAACT
Statistics
Matches: 135, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
80 4 0.03
81 131 0.97
ACGTcount: A:0.17, C:0.19, G:0.20, T:0.43
Consensus pattern (80 bp):
TACCCTTCGAGGGTATTTCTGTCATTTTACCCTTAGGGGTATTTAGGTCATTTTACCCTTCGAGG
GTATTTCGGTCATTT
Found at i:21068338 original size:26 final size:26
Alignment explanation
Indices: 21068308--21068364 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
21068298 TCCTTTAAAA
21068308 ATCACTTAAATGATGTCCATCTTTGT
1 ATCACTTAAATGATGTCCATCTTTGT
* *
21068334 ATCACTTAAATGGTGTTCATCTTTGT
1 ATCACTTAAATGATGTCCATCTTTGT
21068360 -TCACT
1 ATCACT
21068365 AAGTATATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 5 0.17
26 24 0.83
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (26 bp):
ATCACTTAAATGATGTCCATCTTTGT
Found at i:21082819 original size:40 final size:40
Alignment explanation
Indices: 21082764--21082911 Score: 228
Period size: 40 Copynumber: 3.7 Consensus size: 40
21082754 TTATTGAATG
*
21082764 AATGCACAGACATGCCCCTGTTTGTACTTCGATACCCCTA
1 AATGCACATACATGCCCCTGTTTGTACTTCGATACCCCTA
21082804 AATGCACATACATGCCCCTGTTTGTACTTCGATACCCCTA
1 AATGCACATACATGCCCCTGTTTGTACTTCGATACCCCTA
*
21082844 AATGCACATACATGCCCCTGTTTGTACTTC-AGTACCCCTG
1 AATGCACATACATGCCCCTGTTTGTACTTCGA-TACCCCTA
* *
21082884 AATGCACATA-AGTGCCCCTATTTATACT
1 AATGCACATACA-TGCCCCTGTTTGTACT
21082912 CCGGTAACTC
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
39 2 0.02
40 100 0.98
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.30
Consensus pattern (40 bp):
AATGCACATACATGCCCCTGTTTGTACTTCGATACCCCTA
Found at i:21082821 original size:20 final size:20
Alignment explanation
Indices: 21082798--21082862 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
21082788 TACTTCGATA
21082798 CCCCTAAATGCACATACATG
1 CCCCTAAATGCACATACATG
*** * * *
21082818 CCCCTGTTTGTAC-TTCGATA
1 CCCCTAAATGCACATAC-ATG
21082838 CCCCTAAATGCACATACATG
1 CCCCTAAATGCACATACATG
21082858 CCCCT
1 CCCCT
21082863 GTTTGTACTT
Statistics
Matches: 31, Mismatches: 12, Indels: 4
0.66 0.26 0.09
Matches are distributed among these distances:
19 2 0.06
20 27 0.87
21 2 0.06
ACGTcount: A:0.26, C:0.37, G:0.11, T:0.26
Consensus pattern (20 bp):
CCCCTAAATGCACATACATG
Found at i:21082901 original size:20 final size:20
Alignment explanation
Indices: 21082838--21082902 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
21082828 TACTTCGATA
*
21082838 CCCCTAAATGCACATACA-TG
1 CCCCTGAATGCACATA-AGTG
** * * * *
21082858 CCCCTGTTTGTACTTCAGTA
1 CCCCTGAATGCACATAAGTG
21082878 CCCCTGAATGCACATAAGTG
1 CCCCTGAATGCACATAAGTG
21082898 CCCCT
1 CCCCT
21082903 ATTTATACTC
Statistics
Matches: 31, Mismatches: 13, Indels: 2
0.67 0.28 0.04
Matches are distributed among these distances:
19 1 0.03
20 30 0.97
ACGTcount: A:0.25, C:0.35, G:0.14, T:0.26
Consensus pattern (20 bp):
CCCCTGAATGCACATAAGTG
Found at i:21082925 original size:40 final size:40
Alignment explanation
Indices: 21082762--21082926 Score: 215
Period size: 40 Copynumber: 4.1 Consensus size: 40
21082752 AATTATTGAA
* *
21082762 TGAATGCACAGACATGCCCCTGTTTGTACTTCGATACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* *
21082802 TAAATGCACATACATGCCCCTGTTTGTACTTCGATACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* *
21082842 TAAATGCACATACATGCCCCTGTTTGTACTTCAGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
21082882 TGAATGCACATA-AGTGCCCCTATTTATACTCCGGTAACTC
1 TGAATGCACATACA-TGCCCCTGTTTGTACTTCGGTACCCC
21082922 TGAAT
1 TGAAT
21082927 TAAATAGTAT
Statistics
Matches: 113, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (40 bp):
TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
Found at i:21098223 original size:41 final size:41
Alignment explanation
Indices: 21098166--21098435 Score: 274
Period size: 41 Copynumber: 6.6 Consensus size: 41
21098156 TTATCCCATA
* * *
21098166 AATTGCACATATGTGCCCCTGTTTGTACTTCGGTACCCTTG
1 AATTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
* * *
21098207 AATTGCACATACGTGCCCTTGTTTGTACGTT-GGTACCCCTA
1 AATTGCACATACGTGCCCCTGATTGTAC-TTCGGTACCCCTG
* *
21098248 AATTGCACATACGTGCCCCTGATTATACTTCAGTACCCCTG
1 AATTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
* * * * *
21098289 ACGTT-CACATATGTTCCCCTGATTATACTTCGGTACCTCTG
1 A-ATTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
* * * *
21098330 CATTGCACATACGTGCCCCTAATTGTAATTCGGTACCCCTA
1 AATTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
* * * * ** *
21098371 AATTCCATATACGTGCCCTTGTTTGTACTTCACTACTCCTG
1 AATTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
* *
21098412 AATTGCACATGCGTGACCCTGATT
1 AATTGCACATACGTGCCCCTGATT
21098436 ACACTCTGGT
Statistics
Matches: 185, Mismatches: 40, Indels: 8
0.79 0.17 0.03
Matches are distributed among these distances:
40 4 0.02
41 177 0.96
42 4 0.02
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (41 bp):
AATTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
Done.