Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 76 of 187
Found at i:22299238 original size:6 final size:6
Alignment explanation
Indices: 22299227--22299252 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
22299217 CTTAATTAAA
22299227 AACCCT AACCCT AACCCT AACCCT AA
1 AACCCT AACCCT AACCCT AACCCT AA
22299253 TTTAATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.15
Consensus pattern (6 bp):
AACCCT
Found at i:22299270 original size:24 final size:22
Alignment explanation
Indices: 22299239--22299319 Score: 72
Period size: 23 Copynumber: 3.5 Consensus size: 22
22299229 CCCTAACCCT
22299239 AACCCTAACCCTAATTTAATTAA
1 AACCCTAA-CCTAATTTAATTAA
* * * **
22299262 AACCCCTAACTTAATTAAAAACTCT
1 AA-CCCTAACCTAATT--TAATTAA
22299287 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATT-AA
22299310 AACCCTAACC
1 AACCCTAACC
22299320 CTAACCCTAA
Statistics
Matches: 44, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
22 3 0.07
23 18 0.41
24 18 0.41
25 5 0.11
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.27
Consensus pattern (22 bp):
AACCCTAACCTAATTTAATTAA
Found at i:22299290 original size:83 final size:83
Alignment explanation
Indices: 22299183--22299495 Score: 459
Period size: 83 Copynumber: 3.6 Consensus size: 83
22299173 CTAACTCTAA
* *
22299183 CCTAATTTAATTAAAAAC-CTTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACTC-TAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCCTAA
22299247 CCCTAATTTAATTAAAACC
65 CCCTAATTTAATTAAAACC
22299266 CCTAACTTAATTAAAAACTCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCCTAAC
1 CCTAACTTAATTAAAAACTCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCCTAAC
22299331 CCTAATTTAATTAAAACC
66 CCTAATTTAATTAAAACC
22299349 CCTAACTTAATTAAAAACTCTAACCCTAACCTAATTTAATTAAAAACTCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAACTCTAACCCTAACCTAATTTAATTAAAAAC-C---C-----T---AAC
* *
22299414 CCTAACCCTAA-CCTAACTTAATTAAAAAC
54 CCTAACCCTAACCCTAATTTAATTAAAACC
22299443 CCTAACTTAATTAAAAACTCTAACCCTAACCTAATTTAATTAAAAACCCTAAC
1 CCTAACTTAATTAAAAACTCTAACCCTAACCTAATTTAATTAAAAACCCTAAC
22299496 TTAATTAAAA
Statistics
Matches: 213, Mismatches: 4, Indels: 27
0.87 0.02 0.11
Matches are distributed among these distances:
82 3 0.01
83 126 0.59
84 2 0.01
85 1 0.00
87 1 0.00
90 1 0.00
92 1 0.00
93 1 0.00
94 63 0.30
95 14 0.07
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.28
Consensus pattern (83 bp):
CCTAACTTAATTAAAAACTCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCCTAAC
CCTAATTTAATTAAAACC
Found at i:22299307 original size:47 final size:47
Alignment explanation
Indices: 22299233--22299830 Score: 650
Period size: 47 Copynumber: 13.2 Consensus size: 47
22299223 TAAAAACCCT
*
22299233 AACCCTAACCCTAACCCTAATTTAATTAAAACCCCTAACTTAATTAAA
1 AACCCTAACCCTAA-CCTAATTTAATTAAAAACCCTAACTTAATTAAA
*
22299281 AACTCTAACCCTAACCTAATTTAATTAAAAA-CC---C-----T---
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAA
*
22299316 AACCCTAACCCTAACCCTAATTTAATTAAAACCCCTAACTTAATTAAA
1 AACCCTAACCCTAA-CCTAATTTAATTAAAAACCCTAACTTAATTAAA
* *
22299364 AACTCTAACCCTAACCTAATTTAATTAAAAACTCTAACTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAA
*
22299411 AACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAA
*
22299458 AACTCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAA
*
22299505 AACTCTAACCCTAACCTAATTTAATTAAAAA-CC---C-----T---
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAA
22299540 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAA
* * ** * *
22299587 AACCCTAA-CTTAA-TTAA-AAACACTAACCCTAA-CCTAACTTAATTAAA
1 AACCCTAACCCTAACCTAATTTA-ATTAA---AAACCCTAACTTAATTAAA
* * * * * * *
22299634 AACCCCAA-CTTAA-TTAA--AAACCCTAACCCTAA-CCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAA--TTAA---AAACCCTAACTTAATTAAA
* *
22299681 GACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTAAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAA
22299728 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAA
*
22299775 AACCCTAACCCTAACCTAATTTAATTAAAAACTCTAACTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAA
22299822 AACCCTAAC
1 AACCCTAAC
22299831 TTAATTAAAA
Statistics
Matches: 481, Mismatches: 33, Indels: 73
0.82 0.06 0.12
Matches are distributed among these distances:
35 43 0.09
36 18 0.04
37 2 0.00
38 2 0.00
39 1 0.00
40 1 0.00
43 2 0.00
44 2 0.00
45 9 0.02
46 12 0.02
47 349 0.73
48 32 0.07
49 6 0.01
51 2 0.00
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.27
Consensus pattern (47 bp):
AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAA
Found at i:22299321 original size:6 final size:6
Alignment explanation
Indices: 22299310--22299335 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
22299300 TTTAATTAAA
22299310 AACCCT AACCCT AACCCT AACCCT AA
1 AACCCT AACCCT AACCCT AACCCT AA
22299336 TTTAATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.15
Consensus pattern (6 bp):
AACCCT
Found at i:22299401 original size:29 final size:29
Alignment explanation
Indices: 22299154--22299247 Score: 152
Period size: 29 Copynumber: 3.2 Consensus size: 29
22299144 CCACGCAAAC
*
22299154 CCTAACTTAATTAAAAACCCTAACTCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* *
22299183 CCTAATTTAATTAAAAACCTTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
22299212 CCTAACTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
22299241 CCCTAAC
1 -CCTAAC
22299248 CCTAATTTAA
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
29 53 0.90
30 6 0.10
ACGTcount: A:0.44, C:0.30, G:0.00, T:0.27
Consensus pattern (29 bp):
CCTAACTTAATTAAAAACCCTAACCCTAA
Found at i:22299522 original size:29 final size:29
Alignment explanation
Indices: 22299490--22299636 Score: 123
Period size: 29 Copynumber: 4.6 Consensus size: 29
22299480 AATTAAAAAC
22299490 CCTAACTTAATTAAAAACTCTAACCCTAA
1 CCTAACTTAATTAAAAACTCTAACCCTAA
*
22299519 CCTAATTTAATTAAAAACCCTAACCCTAACCCTAA
1 CCTAACTTAATTAAAAA--CT----CTAACCCTAA
* * **
22299554 CCTAATTTAATTAAAAACCCTAACTTAATTAAAAA
1 CCTAACTTAATTAAAAACTCTAAC---CCT---AA
*
22299589 CCCTAACTTAATTAAAAACACTAACCCTAA
1 -CCTAACTTAATTAAAAACTCTAACCCTAA
22299619 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
22299637 CCCAACTTAA
Statistics
Matches: 97, Mismatches: 8, Indels: 26
0.74 0.06 0.20
Matches are distributed among these distances:
29 39 0.40
30 2 0.02
31 2 0.02
32 1 0.01
33 2 0.02
35 29 0.30
36 22 0.23
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.27
Consensus pattern (29 bp):
CCTAACTTAATTAAAAACTCTAACCCTAA
Found at i:22299555 original size:35 final size:35
Alignment explanation
Indices: 22299509--22299630 Score: 140
Period size: 35 Copynumber: 3.5 Consensus size: 35
22299499 ATTAAAAACT
22299509 CTAACCCTAACCTAATTTAATTAAAAACCCTAACC
1 CTAACCCTAACCTAATTTAATTAAAAACCCTAACC
22299544 CTAACCCTAACCTAATTTAATTAAAAACCCTAA-C
1 CTAACCCTAACCTAATTTAATTAAAAACCCTAACC
* **** * *
22299578 TTAATTAAAAACCCTAACTTAATTAAAAACACTAACC
1 CTAA-CCCTAA-CCTAATTTAATTAAAAACCCTAACC
*
22299615 CTAA-CCTAACTTAATT
1 CTAACCCTAACCTAATT
22299631 AAAAACCCCA
Statistics
Matches: 71, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
34 9 0.13
35 37 0.52
36 21 0.30
37 4 0.06
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.28
Consensus pattern (35 bp):
CTAACCCTAACCTAATTTAATTAAAAACCCTAACC
Found at i:22299619 original size:147 final size:141
Alignment explanation
Indices: 22299320--22299736 Score: 549
Period size: 147 Copynumber: 2.9 Consensus size: 141
22299310 AACCCTAACC
* *
22299320 CTAACCCTAACCCTAATTTAATT-AAAACCCCTAACTTAATTAAAAACTCTAACCCTAACCTAAT
1 CTAACCCTAA-CCTAACTTAATTAAAAACCCC-AACTTAATTAAAAACCCTAACCCTAACCTAAT
* * * * * *
22299384 TTAATTAAAAACTCTAA-CTTAA-TTAA--AAACCCTAACCCTAA-CCTAACTTAATTAAAAACC
64 TTAATTAAAAACCCTAACCCTAACCTAATTTAA--TTAA---AAACCCTAACTTAATTAAAAACC
*
22299444 CTAACTTAATTAAAAACT
124 CTAACTTAATTAAAAACA
* * *
22299462 CTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAAAACTCTAACCCTAACCTAATTT
1 CTAACCCTAACCTAACTTAATTAAAAACCCCAACTTAATTAAAAACCCTAACCCTAACCTAATTT
22299527 AATTAAAAACCCTAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCC
66 AATT--AAA----AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCC
22299592 TAACTTAATTAAAAACA
125 TAACTTAATTAAAAACA
22299609 CTAACCCTAACCTAACTTAATTAAAAACCCCAACTTAATTAAAAACCCTAACCCTAACCTAATTT
1 CTAACCCTAACCTAACTTAATTAAAAACCCCAACTTAATTAAAAACCCTAACCCTAACCTAATTT
* *
22299674 AATTAAAGACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTAAATTAAAAACCCTAAC
66 AATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAAC
22299737 CCTAACCTAA
Statistics
Matches: 250, Mismatches: 13, Indels: 25
0.87 0.05 0.09
Matches are distributed among these distances:
141 104 0.42
142 17 0.07
143 3 0.01
145 3 0.01
146 2 0.01
147 109 0.44
148 4 0.02
149 6 0.02
151 2 0.01
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.27
Consensus pattern (141 bp):
CTAACCCTAACCTAACTTAATTAAAAACCCCAACTTAATTAAAAACCCTAACCCTAACCTAATTT
AATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACTT
AATTAAAAACA
Found at i:22299685 original size:29 final size:29
Alignment explanation
Indices: 22299643--22299718 Score: 143
Period size: 29 Copynumber: 2.6 Consensus size: 29
22299633 AAACCCCAAC
22299643 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
*
22299672 TTAATTAAAGACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
22299701 TTAATTAAAAACCCTAAC
1 TTAATTAAAAACCCTAAC
22299719 TAAATTAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (29 bp):
TTAATTAAAAACCCTAACCCTAACCTAAT
Found at i:22299817 original size:65 final size:65
Alignment explanation
Indices: 22299742--22299895 Score: 283
Period size: 65 Copynumber: 2.4 Consensus size: 65
22299732 CTAACCCTAA
*
22299742 CCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAA-
1 CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAT
22299806 CTCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAA
1 C-CTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAA
22299871 T
65 T
22299872 CCTAACTTAATTAAAAACCCTAAC
1 CCTAACTTAATTAAAAACCCTAAC
22299896 CCTAACATAA
Statistics
Matches: 87, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
64 1 0.01
65 85 0.98
66 1 0.01
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.29
Consensus pattern (65 bp):
CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAT
Found at i:22299858 original size:94 final size:93
Alignment explanation
Indices: 22299619--22299877 Score: 287
Period size: 94 Copynumber: 2.8 Consensus size: 93
22299609 CTAACCCTAA
* * *
22299619 CCTAACTTAATTAAAAACCCCAA-CTTAA-TTAAAAACCCTAACCCTAACCTAATTTAATTAAAG
1 CCTAACTTAATTAAAAACCCTAACCTTAACTTAAAAA-CCTAA--CTAACCTAACTTAATTAAAA
22299682 ACCCTAACCCTAACCTAATTTAATTAAAAAC
63 ACCCTAACCCTAACCTAATTTAATTAAAAAC
* * * * * *
22299713 CCTAACTAAATTAAAAACCCTAACCCTAACCTAATTTAA-TTAA-AAACCCTAACTTAATTAAAA
1 CCTAACTTAATTAAAAACCCTAACCTTAACTTAA--AAACCTAACTAA-CCTAACTTAATTAAAA
22299776 ACCCTAACCCTAACCTAATTTAATTAAAAAC
63 ACCCTAACCCTAACCTAATTTAATTAAAAAC
* *
22299807 TCTAACTTAATTAAAAACCCTAA-CTTAA-TTAAAAACCCTAACCCTAACCTAATTTAATTAAAA
1 CCTAACTTAATTAAAAACCCTAACCTTAACTTAAAAA-CCTAA--CTAACCTAACTTAATTAAAA
*
22299870 ATCCTAAC
63 ACCCTAAC
22299878 TTAATTAAAA
Statistics
Matches: 137, Mismatches: 18, Indels: 20
0.78 0.10 0.11
Matches are distributed among these distances:
90 2 0.01
92 6 0.04
93 6 0.04
94 109 0.80
95 6 0.04
96 6 0.04
98 2 0.01
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.27
Consensus pattern (93 bp):
CCTAACTTAATTAAAAACCCTAACCTTAACTTAAAAACCTAACTAACCTAACTTAATTAAAAACC
CTAACCCTAACCTAATTTAATTAAAAAC
Found at i:22299864 original size:47 final size:47
Alignment explanation
Indices: 22299808--22299924 Score: 207
Period size: 47 Copynumber: 2.5 Consensus size: 47
22299798 ATTAAAAACT
*
22299808 CTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAAC
1 CTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAAC
*
22299855 CTAATTTAATTAAAAATCCTAACTTAATTAAAAACCCTAACCCTAAC
1 CTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAAC
*
22299902 ATAATTTAATTAAAAACCCTAAC
1 CTAATTTAATTAAAAACCCTAAC
22299925 CCTAACTCTA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (47 bp):
CTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAAC
Found at i:22299927 original size:6 final size:6
Alignment explanation
Indices: 22299916--22299945 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
22299906 TTTAATTAAA
*
22299916 AACCCT AACCCT AACTCT AACCCT AACCCT
1 AACCCT AACCCT AACCCT AACCCT AACCCT
22299946 CGCATTCGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (6 bp):
AACCCT
Found at i:22303424 original size:20 final size:20
Alignment explanation
Indices: 22303401--22303447 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
22303391 GGGTTAAGAT
*
22303401 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
22303421 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
22303441 TGAGCTG
1 TGAGCTG
22303448 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:22304153 original size:123 final size:123
Alignment explanation
Indices: 22303934--22304526 Score: 1071
Period size: 123 Copynumber: 4.8 Consensus size: 123
22303924 AACTTGCTAT
22303934 TGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
1 TGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
*
22303999 GGCGATTTTATACTATTTGCTCAAAAACGTCAAAAAAATTATTTCTTACATGACTTAC
66 GGCGATTTTATACTATTTGCTCAAAAACGTCAAAAAAATTATTTCTTACATGACCTAC
22304057 TGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
1 TGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
22304122 GGCGATTTTATACTATTTGCTCAAAAACGTCAAAAAAATTATTTCTTACATGACCTAC
66 GGCGATTTTATACTATTTGCTCAAAAACGTCAAAAAAATTATTTCTTACATGACCTAC
*
22304180 TGTAGCAAAATCGCGTCCACGAGGGCGGGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
1 TGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
*
22304245 GGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAAATTATTTCTTACATGACCTAC
66 GGCGATTTTATACTATTTGCTCAAAAACGTC---AAAAAAATTATTTCTTACATGACCTAC
22304306 TGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
1 TGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
*
22304371 GGCGATTTTATACTATTTGCTCAAAAACGTCAAAAAAATTATTTCTTACATGACTTAC
66 GGCGATTTTATACTATTTGCTCAAAAACGTCAAAAAAATTATTTCTTACATGACCTAC
*
22304429 TGTAGCAAAATCGCGTCCACGAGGGCGGGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
1 TGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
* * *
22304494 AGCGATTTTATATTATTTGAC-CAGAAACGTCAA
66 GGCGATTTTATACTATTTG-CTCAAAAACGTCAA
22304527 CTCGAAATAA
Statistics
Matches: 456, Mismatches: 10, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
123 334 0.73
124 1 0.00
126 121 0.27
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (123 bp):
TGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
GGCGATTTTATACTATTTGCTCAAAAACGTCAAAAAAATTATTTCTTACATGACCTAC
Found at i:22304380 original size:249 final size:248
Alignment explanation
Indices: 22303934--22304526 Score: 1093
Period size: 249 Copynumber: 2.4 Consensus size: 248
22303924 AACTTGCTAT
*
22303934 TGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
1 TGTAGCAAAATCGCGTCCACGAGGGCGGGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
* *
22303999 GGCGATTTTATACTATTTGCTCAAAAACGTC--AAAAAAATTATTTCTTACATGACTTACTGTAG
66 GGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGACCTACTGTAG
22304062 CAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAGGCGA
131 CAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAGGCGA
22304127 TTTTATACTATTTGCTCAAAAACGTCAAAAAAATTATTTCTTACATGACCTAC
196 TTTTATACTATTTGCTCAAAAACGTCAAAAAAATTATTTCTTACATGACCTAC
22304180 TGTAGCAAAATCGCGTCCACGAGGGCGGGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
1 TGTAGCAAAATCGCGTCCACGAGGGCGGGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
22304245 GGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAAATTATTTCTTACATGACCTACTGTA
66 GGCGATTTTATACTATTTGCTCAGAAACGTC-AAAAAAAAATTATTTCTTACATGACCTACTGTA
22304310 GCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAGGCG
130 GCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAGGCG
*
22304375 ATTTTATACTATTTGCTCAAAAACGTCAAAAAAATTATTTCTTACATGACTTAC
195 ATTTTATACTATTTGCTCAAAAACGTCAAAAAAATTATTTCTTACATGACCTAC
22304429 TGTAGCAAAATCGCGTCCACGAGGGCGGGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
1 TGTAGCAAAATCGCGTCCACGAGGGCGGGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
* *
22304494 AGCGATTTTATATTATTTGAC-CAGAAACGTCAA
66 GGCGATTTTATACTATTTG-CTCAGAAACGTCAA
22304527 CTCGAAATAA
Statistics
Matches: 337, Mismatches: 6, Indels: 6
0.97 0.02 0.02
Matches are distributed among these distances:
246 94 0.28
248 2 0.01
249 240 0.71
250 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (248 bp):
TGTAGCAAAATCGCGTCCACGAGGGCGGGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
GGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGACCTACTGTAG
CAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAGGCGA
TTTTATACTATTTGCTCAAAAACGTCAAAAAAATTATTTCTTACATGACCTAC
Found at i:22304574 original size:10 final size:9
Alignment explanation
Indices: 22304549--22304574 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
22304539 TATTCCGGGA
22304549 CCTAAAAAC
1 CCTAAAAAC
22304558 CCTAAAAAC
1 CCTAAAAAC
22304567 CCTAAAAA
1 CCTAAAAA
22304575 TCCTGAACCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.31, G:0.00, T:0.12
Consensus pattern (9 bp):
CCTAAAAAC
Found at i:22304795 original size:29 final size:29
Alignment explanation
Indices: 22304735--22304794 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
22304725 GATTTCCCGG
*
22304735 AAAAT-GGCCCATTCCGGTAAATAATAAA
1 AAAATCGGCCCATTCCGATAAATAATAAA
* *
22304763 AAAATCGGCCCATTTCGATAAAT-TTAAA
1 AAAATCGGCCCATTCCGATAAATAATAAA
22304791 AAAA
1 AAAA
22304795 AACGGCTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 13 0.46
29 15 0.54
ACGTcount: A:0.48, C:0.17, G:0.12, T:0.23
Consensus pattern (29 bp):
AAAATCGGCCCATTCCGATAAATAATAAA
Found at i:22306908 original size:72 final size:72
Alignment explanation
Indices: 22306832--22306972 Score: 273
Period size: 72 Copynumber: 2.0 Consensus size: 72
22306822 ACGAAGGCAT
*
22306832 GACGAGAGAAAGCCGGAAGTCCACGAAGGAATACATGACTTGATTTAATTGCCAATGAAGATTAT
1 GACGAGAGAAAGCCGGAAGTCCACGAAGGAATACATGACTTGATTTAATTGCCAACGAAGATTAT
22306897 CCAACAC
66 CCAACAC
22306904 GACGAGAGAAAGCCGGAAGTCCACGAAGGAATACATGACTTGATTTAATTGCCAACGAAGATTAT
1 GACGAGAGAAAGCCGGAAGTCCACGAAGGAATACATGACTTGATTTAATTGCCAACGAAGATTAT
22306969 CCAA
66 CCAA
22306973 GAGCCGGCAC
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.19
Consensus pattern (72 bp):
GACGAGAGAAAGCCGGAAGTCCACGAAGGAATACATGACTTGATTTAATTGCCAACGAAGATTAT
CCAACAC
Found at i:22307353 original size:103 final size:100
Alignment explanation
Indices: 22307214--22307412 Score: 344
Period size: 103 Copynumber: 2.0 Consensus size: 100
22307204 ATCAACGCAT
22307214 TCTTTTTCTTTGCATTCTTTTCATGCATTGCATCACATCATATGCATTAATAACCATTTAAAAAA
1 TCTTTTTCTTTGCATTCTTTTCATGCATTGCATCACATCATATGCATTAATAACCA-TT--AAAA
*
22307279 AAACTTAATCGAATAAAATCATTTAAGTTAACCTTGCC
63 AAACCTAATCGAATAAAATCATTTAAGTTAACCTTGCC
* *
22307317 TCTTTTTCTTTGCATTCTTTTCATGCATTGCATCACATCATATGCATTAATGACCATTAAAAGAA
1 TCTTTTTCTTTGCATTCTTTTCATGCATTGCATCACATCATATGCATTAATAACCATTAAAAAAA
22307382 CCTAATCGAATAAAATCATTTAAGTTAACCT
66 CCTAATCGAATAAAATCATTTAAGTTAACCT
22307413 GGAAAACCAA
Statistics
Matches: 93, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
100 36 0.39
102 2 0.02
103 55 0.59
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.39
Consensus pattern (100 bp):
TCTTTTTCTTTGCATTCTTTTCATGCATTGCATCACATCATATGCATTAATAACCATTAAAAAAA
CCTAATCGAATAAAATCATTTAAGTTAACCTTGCC
Found at i:22314646 original size:79 final size:82
Alignment explanation
Indices: 22314515--22314675 Score: 292
Period size: 79 Copynumber: 2.0 Consensus size: 82
22314505 CGCAGACTCC
22314515 GTCAAGAAATACTTCACTTGAAAGAAAGGGGAACCAAAGTGAAAACCCGTGAA-GG-GC-GCTTT
1 GTCAAGAAATACTTCACTTGAAAGAAAGGGGAACCAAAGTGAAAACCCGTGAAGGGCGCTGCTTT
22314577 GCTTCCTAAAAAAAAAA
66 GCTTCCTAAAAAAAAAA
22314594 GTCAAGAAATACTTCACTTGAAAGAAAGGGGAACCAAAGTGAAAACCCGTGAAGGGCGCTGCTTT
1 GTCAAGAAATACTTCACTTGAAAGAAAGGGGAACCAAAGTGAAAACCCGTGAAGGGCGCTGCTTT
*
22314659 TCTTCCTAAAAAAAAAA
66 GCTTCCTAAAAAAAAAA
22314676 AAAAAACTTT
Statistics
Matches: 78, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
79 53 0.68
80 2 0.03
81 2 0.03
82 21 0.27
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.19
Consensus pattern (82 bp):
GTCAAGAAATACTTCACTTGAAAGAAAGGGGAACCAAAGTGAAAACCCGTGAAGGGCGCTGCTTT
GCTTCCTAAAAAAAAAA
Found at i:22315971 original size:46 final size:46
Alignment explanation
Indices: 22315904--22316070 Score: 214
Period size: 46 Copynumber: 3.7 Consensus size: 46
22315894 ATTATACAGG
22315904 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAAAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAAAATTTCAGA
* * ** *** *
22315950 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA---GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGA-CCAAAAAATTTCAGA
22315994 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAAAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAAAATTTCAGA
* *
22316040 TCTTATCTCCCTGAGGTTACAGTGGAGCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGA
22316071 TTGAAGCCAG
Statistics
Matches: 99, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
43 3 0.03
44 32 0.32
46 61 0.62
47 3 0.03
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (46 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAAAATTTCAGA
Found at i:22316014 original size:44 final size:44
Alignment explanation
Indices: 22315947--22316643 Score: 446
Period size: 44 Copynumber: 15.7 Consensus size: 44
22315937 AAAAAATTTC
* *
22315947 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAG
* ** * * *
22315991 AGATCTTATCTCCCTGAGATTACAGTGGAACAGA-CCAAAAAATTTC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACA---G
* *
22316037 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAG
* ** *
22316081 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAG
* * * *
22316125 TA-ATCCTATCTCCTTGAGATTACAATGGAGCGGATT--A-A-A-
1 -AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAG
* * * * *
22316164 AGATCTTATCTCTCTGA-AGTTACAGTAGAGAAGA-TCACA-TCAG
1 AGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGA-AGACAG
* * * ** * *
22316207 -G-TCTTATTTCCCTGAGGTTACAGTGGAGTAGACCGGAGA-ATTCC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACA---G
* *
22316251 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAG
* *
22316295 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA-
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAG
** * * * *
22316338 CTATCCTATCTCCCTGAGATTACAATGGGGCAGATTGAAGATAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAG
* *
22316382 TA-ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAG-CTAG
1 -AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGAC-AG
* * * * * * *
22316426 TGATCCTATCTCTCTGA-AGTTACAGTGGAGCGGATT-AAAATAA
1 AGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGACAG
* *
22316469 AGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCACATCAGATTGAAGCCAG
1 A-GATCTTATCTCCCTGAGA-TTACAGT-G-G-AG-------CAGATTGAAGACAG
* ** * *
22316524 AGATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAA-AAATTTC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACA---G
* * *
22316570 AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGATAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAG
* *
22316614 TA-ATCCTATCTGCCTGAGATTACAGTGGAG
1 -AGATCTTATCTCCCTGAGATTACAGTGGAG
22316644 TGGATTAAAA
Statistics
Matches: 503, Mismatches: 105, Indels: 90
0.72 0.15 0.13
Matches are distributed among these distances:
38 3 0.01
39 23 0.05
40 1 0.00
41 29 0.06
42 3 0.01
43 43 0.09
44 255 0.51
45 4 0.01
46 99 0.20
47 8 0.02
51 1 0.00
52 1 0.00
53 1 0.00
54 27 0.05
55 5 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAG
Found at i:22316057 original size:90 final size:89
Alignment explanation
Indices: 22315904--22316642 Score: 513
Period size: 90 Copynumber: 8.3 Consensus size: 89
22315894 ATTATACAGG
* *
22315904 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAAAATTTCAGATCTTATCTCCCTGAGGTTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAAAA-TTCAGATCTTATCTCCCTGAGATTA
22315969 CAGTGGAGCAGATTGAAGCCAGAGA
65 CAGTGGAGCAGATTGAAGCCAGAGA
* *
22315994 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAAAATTTCAGATCTTATCTCCCTGAGGTTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAAAA-TTCAGATCTTATCTCCCTGAGATTA
22316059 CAGTGGAGCAGATTGAAGCCAGAGA
65 CAGTGGAGCAGATTGAAGCCAGAGA
* * * * * *
22316084 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGT-A-ATCCTATCTCCTTGAGATTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAA-AAATTCAGATCTTATCTCCCTGAGATTA
* *
22316147 CAATGGAGCGGATT-AA---A-AGA
65 CAGTGGAGCAGATTGAAGCCAGAGA
* * * * * *
22316167 TCTTATCTCTCTGA-AGTTACAGTAGAGA-AGATC---ACA-TCAGGTCTTATTTCCCTGAGGTT
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGATCAAAAAATTCAGATCTTATCTCCCTGAGATT
* ** *
22316226 ACAGTGGAGTAGACCGGAGAATTCC--AGA
64 ACAGTGGAGCAGA---TTGAA-GCCAGAGA
* * * *** *
22316254 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA--GAGATCTTATCTCCCTGAGATTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGA-TCAAAAAATTCAGATCTTATCTCCCTGAGATTA
* * * **
22316317 CAGCGGAGCAGATCGAAGACA-CTA
65 CAGTGGAGCAGATTGAAGCCAGAGA
* * ** * * * *
22316341 TCCTATCTCCCTGAGATTACAATGGGGCAGATTGAAGATAGT-A-ATCTTATCTCCCTGAGATTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGA-TCAAAAAATTCAGATCTTATCTCCCTGAGATTA
* * * *
22316404 CAGCGGAGTAGATTGAAGCTAGTGA
65 CAGTGGAGCAGATTGAAGCCAGAGA
* * * * * *
22316429 TCCTATCTCTCTGA-AGTTACAGTGGAGCGGATTAAAATAA---AGGATCTTATCTCTCTGA-AG
1 TCTTATCTCCCTGAGA-TTACAGTGGAACAGATCAAAA-AATTCA-GATCTTATCTCCCTGAGA-
22316489 TTACAGTAGAGTAGATCACATCAGATTGAAGCCAGAGA
62 TTACAGT-G-G-AG-------CAGATTGAAGCCAGAGA
* *
22316527 TCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAAAATTTCAGATCTTATCTCCCTGAGATTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATC-AAAAAATTCAGATCTTATCTCCCTGAGATTA
* * **
22316592 CAGCGGAGTAGATTGAAGATAGTA-A
65 CAGTGGAGCAGATTGAAGCCAG-AGA
* *
22316617 TCCTATCTGCCTGAGATTACAGTGGA
1 TCTTATCTCCCTGAGATTACAGTGGA
22316643 GTGGATTAAA
Statistics
Matches: 523, Mismatches: 81, Indels: 90
0.75 0.12 0.13
Matches are distributed among these distances:
78 1 0.00
79 3 0.01
80 24 0.05
82 1 0.00
83 29 0.06
84 3 0.01
86 2 0.00
87 111 0.21
88 78 0.15
89 2 0.00
90 190 0.36
91 7 0.01
97 2 0.00
98 41 0.08
99 6 0.01
100 21 0.04
101 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (89 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAAAATTCAGATCTTATCTCCCTGAGATTAC
AGTGGAGCAGATTGAAGCCAGAGA
Found at i:22316403 original size:87 final size:87
Alignment explanation
Indices: 22316257--22316461 Score: 254
Period size: 87 Copynumber: 2.3 Consensus size: 87
22316247 TTCCAGATCT
* * *
22316257 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCG
1 TATCTCCCTGAGATTACAATGGAGCAGATTGAAGACAGAGATCTTATCTCCCTGAGATTACAGCG
22316322 GAGCAGATCGAAGACACTATCC
66 GAGCAGATCGAAGACACTATCC
* *
22316344 TATCTCCCTGAGATTACAATGGGGCAGATTGAAGATAGTA-ATCTTATCTCCCTGAGATTACAGC
1 TATCTCCCTGAGATTACAATGGAGCAGATTGAAGACAG-AGATCTTATCTCCCTGAGATTACAGC
* * *
22316408 GGAGTAGATTGAAG-CTAGTGATCC
65 GGAGCAGATCGAAGAC-ACT-ATCC
* * *
22316432 TATCTCTCTGA-AGTTACAGTGGAGCGGATT
1 TATCTCCCTGAGA-TTACAATGGAGCAGATT
22316462 AAAATAAAGG
Statistics
Matches: 102, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
86 1 0.01
87 72 0.71
88 29 0.28
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (87 bp):
TATCTCCCTGAGATTACAATGGAGCAGATTGAAGACAGAGATCTTATCTCCCTGAGATTACAGCG
GAGCAGATCGAAGACACTATCC
Found at i:22316659 original size:188 final size:187
Alignment explanation
Indices: 22316384--22316725 Score: 571
Period size: 188 Copynumber: 1.8 Consensus size: 187
22316374 GAAGATAGTA
* *
22316384 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTGATCCTATCTCTCTGAAGTTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGATAGTAATCCTATCTCTCTGAAGTTAC
*
22316449 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACAGCAGA
** * *
22316514 TTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAAAATTTCAG
131 -CAAAACCACAGATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAAAATTTCAG
22316572 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGATAGTAATCCTATCTGC-CTG-AGATT
1 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGATAGTAATCCTATCT-CTCTGAAG-TT
*
22316635 ACAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACAGCA
64 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACAGCA
22316700 GACAAAACCACAGATCTTATCTCCCT
129 GACAAAACCACAGATCTTATCTCCCT
22316726 AAGCAGTTAG
Statistics
Matches: 144, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
187 22 0.15
188 121 0.84
189 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (187 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGATAGTAATCCTATCTCTCTGAAGTTAC
AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACAGCAGA
CAAAACCACAGATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAAAATTTCAG
Found at i:22316668 original size:44 final size:44
Alignment explanation
Indices: 22316525--22316692 Score: 119
Period size: 44 Copynumber: 3.8 Consensus size: 44
22316515 TGAAGCCAGA
* ** ** *
22316525 GATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAAA-ATTT
1 GATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAATA-GT
*
22316569 CAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGATAGT
1 --GATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAATAGT
* * * * *
22316615 AATCCTATCTGCCTGAGATTACAGTGGAGTGGATT-AAAATAAAG-
1 GATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAAT--AGT
* **
22316659 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGAT
1 GATCTTATCTCCCTGAGA-TTACAGCGGAGTAGAT
22316693 CACAGCAGAC
Statistics
Matches: 99, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
43 5 0.05
44 56 0.57
45 2 0.02
46 35 0.35
47 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (44 bp):
GATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAATAGT
Found at i:22317165 original size:8 final size:8
Alignment explanation
Indices: 22317154--22317178 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
22317144 CCACCTACCC
22317154 CCCACTTG
1 CCCACTTG
22317162 CCCACTTG
1 CCCACTTG
22317170 CCCACTTG
1 CCCACTTG
22317178 C
1 C
22317179 GCCGAACACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.52, G:0.12, T:0.24
Consensus pattern (8 bp):
CCCACTTG
Found at i:22317697 original size:13 final size:12
Alignment explanation
Indices: 22317661--22317698 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
22317651 CCTTTCCCCC
22317661 TCCCTTCTCTC-
1 TCCCTTCTCTCT
22317672 TCCCTTCTCTCT
1 TCCCTTCTCTCT
22317684 TCCCTCTCTCTCT
1 TCCCT-TCTCTCT
22317697 TC
1 TC
22317699 TTTTTTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 11 0.44
12 5 0.20
13 9 0.36
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (12 bp):
TCCCTTCTCTCT
Found at i:22321307 original size:21 final size:21
Alignment explanation
Indices: 22321265--22321307 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
22321255 CTTTTGAATC
**
22321265 ATTTTATTATTTTATTTATAT
1 ATTTTATTATTTTATACATAT
*
22321286 ATTTTATTATTTTATACGTAT
1 ATTTTATTATTTTATACATAT
22321307 A
1 A
22321308 CCTTTTTCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (21 bp):
ATTTTATTATTTTATACATAT
Found at i:22323178 original size:19 final size:20
Alignment explanation
Indices: 22323134--22323178 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
22323124 AACGTCTCTT
*
22323134 TATGCA-TTCATTTCATGCA
1 TATGCATTTCATTACATGCA
22323153 T-TCGCATTTCATTACAT-CA
1 TAT-GCATTTCATTACATGCA
22323172 TATGCAT
1 TATGCAT
22323179 CAAAGATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
18 1 0.05
19 11 0.50
20 10 0.45
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (20 bp):
TATGCATTTCATTACATGCA
Found at i:22325111 original size:20 final size:20
Alignment explanation
Indices: 22325086--22325126 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
22325076 GCAAATGTTA
*
22325086 TTTCATT-CTTTACGATTTTT
1 TTTCATTCCTTCA-GATTTTT
22325106 TTTCATTCCTTCAGATTTTT
1 TTTCATTCCTTCAGATTTTT
22325126 T
1 T
22325127 CTGCCAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.15, C:0.17, G:0.05, T:0.63
Consensus pattern (20 bp):
TTTCATTCCTTCAGATTTTT
Found at i:22326104 original size:7 final size:7
Alignment explanation
Indices: 22326079--22326122 Score: 56
Period size: 7 Copynumber: 6.3 Consensus size: 7
22326069 AGTGATGTGA
22326079 AAAAATG
1 AAAAATG
22326086 AAAAGATG
1 AAAA-ATG
22326094 -AAAATG
1 AAAAATG
22326100 AAAAATG
1 AAAAATG
22326107 AAAAA-G
1 AAAAATG
22326113 TAAAAATG
1 -AAAAATG
22326121 AA
1 AA
22326123 GAAGCTAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
6 4 0.12
7 25 0.76
8 4 0.12
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:22326118 original size:21 final size:21
Alignment explanation
Indices: 22326079--22326122 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
22326069 AGTGATGTGA
*
22326079 AAAAATGAAAAGATGAAAATG
1 AAAAATGAAAAGATAAAAATG
22326100 AAAAATGAAAA-AGTAAAAATG
1 AAAAATGAAAAGA-TAAAAATG
22326121 AA
1 AA
22326123 GAAGCTAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (21 bp):
AAAAATGAAAAGATAAAAATG
Found at i:22327559 original size:132 final size:132
Alignment explanation
Indices: 22327392--22329237 Score: 2634
Period size: 132 Copynumber: 14.0 Consensus size: 132
22327382 GTGGAGCAGG
** * * *
22327392 TTGAAGATAGCAGATCTTGTCCCCCTGAGCAGTAGTGGGGCAGATCAAAGATGGCAGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
* *
22327457 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTAGGCAACAGTGGAATA
66 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTGGAATA
22327522 GA
131 GA
* * *
22327524 TTGAAGATTTTAGATCTTATCTCCCTAAGCAGTAGTGGGGCAGATCAAAGATGGCAGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
* * *
22327589 TTCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTAGGCAACAGTGGAATA
66 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTGGAATA
22327654 GA
131 GA
* * *
22327656 TTGAAGATTTTAGATCTTATCTCCCTAAGCAGTAGTGGGGCAGATCAAAGATGGCAGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
*
22327721 TTCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTGGAATA
66 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTGGAATA
22327786 GA
131 GA
* ** * * * *
22327788 TTGAAGATTTTAGATCTTACCTTCCT--GCA-TAGACAGCGAAGCAGATCGAAGATGGCAAATTT
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAG--TG-G-AGCAGATCAAAGATGGCAGATTT
22327850 TACCT-CCTCGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTG
62 TACCTCCCT-GTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTG
22327914 GAATAGA
126 GAATAGA
*
22327921 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGGGCAGATCAAAGATGGCAGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
* * * * ** *
22327986 TTCCTATGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCTTGGATAGTAGTGGAATA
66 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTGGAATA
22328051 GA
131 GA
* * * * *
22328053 TTGAGGATTTTAGATCTTGTCTCCCCAAGCAGTAGTGGGGCAGATCAAAGATGG-TGAATTTTAC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAG-ATTTTAC
* * * *
22328117 CTCCCTGTGGTTACAGTGGAGTACATTGAAACCAATAATTTTACTTCCCTGGGCAGTAGCGGAAT
65 CTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTGGAAT
22328182 AGA
130 AGA
* * *
22328185 TTGAAGACTTCAGATCTTGTCTCCCCAAGCAGTAGTAGAGCAGATCAAAGATGGCAGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
* * *
22328250 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTTTACTTCCCTGGACAGCAGTGGAATA
66 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTGGAATA
22328315 GA
131 GA
* * *
22328317 TTGAAGATTTAAGATCTTGTCTCCCCAAGCAGTAGTAGAGCAGATCAAAGATGGCAGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
* *
22328382 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGGCAACAGTGGAAT
66 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCT-GGGCAGCAGTGGAAT
22328447 AGA
130 AGA
* * * *
22328450 TTGGAGATTTCAGATATTGTCTCCCTAGGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
* * * *
22328515 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCAACTTCCTTGGACAGTAGTGGAATA
66 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTGGAATA
22328580 GA
131 GA
* * *
22328582 TTAAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
* * * *
22328647 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCAACTTCCTTGGACAGTAGTGGAATA
66 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTGGAATA
22328712 GA
131 GA
* * *
22328714 TTAAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
* * *
22328779 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTTTACTTCCCTGGACAGCAGTGGAATA
66 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTGGAATA
22328844 GA
131 GA
* * *
22328846 TTGAAGATTTCAGATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGGTGG-TGAATTTTAC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAG-ATTTTAC
* *
22328910 CTCCCTGAGGTTACAGTGGAGTATATTGAAGCCAGA-AATTCTACTTCCCTGGGCAGCAGTGGAA
65 CTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA-ATAATTCTACTTCCCTGGGCAGCAGTGGAA
22328974 TAGA
129 TAGA
* * * * * *
22328978 TTGAAGATTACAGGTCTTATCTCCCTAAGCAGTAGAGGAGCAGATCAAATATGACAGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
* *
22329043 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA-TCTCCCTGGGC-G-ACGTGGAA
66 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACT-TCCCTGGGCAGCA-GTGGAA
22329105 TAGA
129 TAGA
* * * *
22329109 TTGGAGATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAACAGATCAAAGATGGCAAATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
* * * * * * *
22329174 TCCCTGAGGTTGCAGTGGAGTATATTGAAGCCAGTAATTCTA-TTCCTCCGGTCGGCAGTGGAAT
66 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCC-CTGGGCAGCAGTGGAAT
22329238 CGGTCGAAGA
Statistics
Matches: 1581, Mismatches: 112, Indels: 42
0.91 0.06 0.02
Matches are distributed among these distances:
129 3 0.00
130 7 0.00
131 117 0.07
132 1211 0.77
133 236 0.15
134 1 0.00
135 3 0.00
136 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTGGAATA
GA
Found at i:22328444 original size:529 final size:527
Alignment explanation
Indices: 22327392--22329219 Score: 2679
Period size: 529 Copynumber: 3.5 Consensus size: 527
22327382 GTGGAGCAGG
** * * *
22327392 TTGAAGATAGCAGATCTTGTCCCCCTGAGCAGTAGTGGGGCAGATCAAAGATGGCAGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
* * *
22327457 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTAGGCAA-CAGTGGAAT
66 TCCCTATGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTT-CCTTGG-AAGTAGTGGAAT
* * *
22327521 AGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGTAGTGGGGCAGATCAAAGATGGC-AGATTT
129 AGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGA-ATTT
* * **
22327585 TACCTTCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTAGGCAACAGTGG
193 TACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGTAGTGG
* * *
22327650 AATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGTAGTGGGGCAGATCAAAGATGGCAGAT
258 AATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGAT
* * * *
22327715 TTTACCTTCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGT
323 TTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTTTACTTCCCTGGACAGCAGT
* ** * * *
22327780 GGAATAGATTGAAGATTTTAGATCTTACCTTCCTGCATAGACAG-CG-A-AGCAGATCGAAGATG
388 GGAATAGATTGAAGATTTAAGATCTTGTC-TCC-CCA-AG-CAGTAGTAGAGCAGATCAAAGATG
* *
22327842 GCAAATTTTACCT-CCTCGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGG
449 GCAGATTTTACCTCCCT-GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGG
22327906 CAGCAGTGGAATAGA
513 CAGCAGTGGAATAGA
*
22327921 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGGGCAGATCAAAGATGGCAGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
* *
22327986 TTCCTATGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCTTGGATAGTAGTGGAATA
66 TCCCTATGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCTTGGA-AGTAGTGGAATA
* * * * *
22328051 GATTGAGGATTTTAGATCTTGTCTCCCCAAGCAGTAGTGGGGCAGATCAAAGATGGTGAATTTTA
130 GATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATTTTA
* * *
22328116 CCTCCCTGTGGTTACAGTGGAGTACATTGAAACCAATAATTTTACTTCCCTGGGCAGTAGCGGAA
195 CCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGTAGTGGAA
* * *
22328181 TAGATTGAAGACTTCAGATCTTGTCTCCCCAAGCAGTAGTAGAGCAGATCAAAGATGGCAGATTT
260 TAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTT
22328246 TACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTTTACTTCCCTGGACAGCAGTGG
325 TACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTTTACTTCCCTGGACAGCAGTGG
22328311 AATAGATTGAAGATTTAAGATCTTGTCTCCCCAAGCAGTAGTAGAGCAGATCAAAGATGGCAGAT
390 AATAGATTGAAGATTTAAGATCTTGTCTCCCCAAGCAGTAGTAGAGCAGATCAAAGATGGCAGAT
*
22328376 TTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGGCAACAG
455 TTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCT-GGGCAGCAG
22328441 TGGAATAGA
519 TGGAATAGA
* * * *
22328450 TTGGAGATTTCAGATATTGTCTCCCTAGGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
* *
22328515 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCAACTTCCTTGGACAGTAGTGGAATA
66 TCCCTATGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCTTGGA-AGTAGTGGAATA
* * *
22328580 GATTAAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTA
130 GATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATTTTA
* * *
22328645 CCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCAACTTCCTTGGACAGTAGTGGAA
195 CCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGTAGTGGAA
* * *
22328710 TAGATTAAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTT
260 TAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTT
22328775 TACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTTTACTTCCCTGGACAGCAGTGG
325 TACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTTTACTTCCCTGGACAGCAGTGG
* * * *
22328840 AATAGATTGAAGATTTCAGATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGGTGG-TGAA
390 AATAGATTGAAGATTTAAGATCTTGTCTCCCCAAGCAGTAGTAGAGCAGATCAAAGATGGCAG-A
* * *
22328904 TTTTACCTCCCTGAGGTTACAGTGGAGTATATTGAAGCCAGAAATTCTACTTCCCTGGGCAGCAG
454 TTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAG
22328969 TGGAATAGA
519 TGGAATAGA
* * * * * *
22328978 TTGAAGATTACAGGTCTTATCTCCCTAAGCAGTAGAGGAGCAGATCAAATATGACAGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
* * **
22329043 TCCCTGA-GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA-TCTCCCTGGGCG-ACGTGGAA
66 TCCCT-ATGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACT-TCCTTGGAAGTA-GTGGAA
* * * *
22329105 TAGATTGGAGATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAACAGATCAAAGATGGCAAATTT
128 TAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATTT
* * * *
22329170 TACCTCCCTGAGGTTGCAGTGGAGTATATTGAAGCCAGTAATTCTA-TTCC
193 TACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCC
22329220 TCCGGTCGGC
Statistics
Matches: 1182, Mismatches: 105, Indels: 27
0.90 0.08 0.02
Matches are distributed among these distances:
525 3 0.00
526 8 0.01
527 111 0.09
528 195 0.16
529 864 0.73
530 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (527 bp):
TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
TCCCTATGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCTTGGAAGTAGTGGAATAG
ATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATTTTAC
CTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGTAGTGGAAT
AGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTT
ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTTTACTTCCCTGGACAGCAGTGGA
ATAGATTGAAGATTTAAGATCTTGTCTCCCCAAGCAGTAGTAGAGCAGATCAAAGATGGCAGATT
TTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTG
GAATAGA
Found at i:22328580 original size:661 final size:657
Alignment explanation
Indices: 22327402--22329213 Score: 2724
Period size: 661 Copynumber: 2.7 Consensus size: 657
22327392 TTGAAGATAG
* *
22327402 CAGATCTTGTC-CCCCTGAGCAGTAGTGGGGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGG
1 CAGATCTTGTCTCCCC-AAGCAGTAGTGGGGCAGATCAAAGATGGGA-ATTTTACCTCCCTGTGG
* * *
22327466 TTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTAGGCAACAGTGGAATAGATTGAAGA
64 TTACAGTGGAGTACATTGAAGCCAATAATTTTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGA
* * * * *
22327531 TTTTAGATCTTATCTCCCTAAGCAGTAGTGGGGCAGATCAAAGATGGCAGATTTTACCTTCCTGT
129 TTTCAGATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGT
* *
22327596 GGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTAGGCAACAGTGGAATAGATTGAA
194 GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCT-GGCAGCAGTGGAATAGATTGAA
* * * *
22327661 GATTTTAGATCTTATCTCCCTAAGCAGTAGTGGGGCAGATCAAAGATGGCAGATTTTACCTTCCT
258 GATTTAAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCAAAGATGGCAGATTTTACCTCCCT
* *
22327726 GTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTG
323 GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTG
* * ** * * *
22327791 AAGATTTTAGATCTTACCTTCCT-GCA-TAGACAGCGAAGCAGATCGAAGATGGCAAATTTTACC
388 GAGATTTCAGATCTTGTCTCCCTAGCAGTAG--TG-G-AGCAGATCAAAGATGGCAAATTTTACC
* *
22327854 T-CCTCGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAGTGGAAT
449 TCCCT-GTGGTTACAGTGGAGTACATTGAAGCCAATAATTCAACTTCCCTGGACAGCAGTGGAAT
* * *
22327918 AGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGGGCAGATCAAAGATGGCAGATTTT
513 AGATTAAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTT
* * * *
22327983 ACCTTCCTATGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCTTGGATAGTAGTGGA
578 ACCTCCCTATGGTTACAGTGGAGTACATTGAAGCCAATAATTCAACTTCCTTGGACAGTAGTGGA
* *
22328048 ATAGATTGAGGATTT
643 ATAGATTAAAGATTT
*
22328063 TAGATCTTGTCTCCCCAAGCAGTAGTGGGGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGT
1 CAGATCTTGTCTCCCCAAGCAGTAGTGGGGCAGATCAAAGATGG-GAATTTTACCTCCCTGTGGT
* * * *
22328128 TACAGTGGAGTACATTGAAACCAATAATTTTACTTCCCTGGGCAGTAGCGGAATAGATTGAAGAC
65 TACAGTGGAGTACATTGAAGCCAATAATTTTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGAT
*
22328193 TTCAGATCTTGTCTCCCCAAGCAGTAGTAGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTG
130 TTCAGATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTG
*
22328258 GTTACAGTGGAGTACATTGAAGCCAGTAATTTTACTTCCCTGGACAGCAGTGGAATAGATTGAAG
195 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGG-CAGCAGTGGAATAGATTGAAG
* *
22328323 ATTTAAGATCTTGTCTCCCCAAGCAGTAGTAGAGCAGATCAAAGATGGCAGATTTTACCTCCCTG
259 ATTTAAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCAAAGATGGCAGATTTTACCTCCCTG
22328388 TGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGGCAACAGTGGAATAGATTG
324 TGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCT-GGGCAACAGTGGAATAGATTG
* **
22328453 GAGATTTCAGATATTGTCTCCCTAGGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCTCC
388 GAGATTTCAGATCTTGTCTCCCTA-GCAGTAGTGGAGCAGATCAAAGATGGCAAATTTTACCTCC
* *
22328518 CTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCAACTTCCTTGGACAGTAGTGGAATAGAT
452 CTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCAACTTCCCTGGACAGCAGTGGAATAGAT
*
22328583 TAAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCT
517 TAAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCT
*
22328648 CCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCAACTTCCTTGGACAGTAGTGGAATAG
582 CCCTATGGTTACAGTGGAGTACATTGAAGCCAATAATTCAACTTCCTTGGACAGTAGTGGAATAG
22328713 ATTAAAGATTT
647 ATTAAAGATTT
* * * *
22328724 CAGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGT
1 CAGATCTTGTCTCCCCAAGCAGTAGTGGGGCAGATCAAAGATGG-GAATTTTACCTCCCTGTGGT
* *
22328789 TACAGTGGAGTACATTGAAGCCAGTAATTTTACTTCCCTGGACAGCAGTGGAATAGATTGAAGAT
65 TACAGTGGAGTACATTGAAGCCAATAATTTTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGAT
* * *
22328854 TTCAGATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGGTGG-TGAATTTTACCTCCCTGA
130 TTCAGATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGATGGCAG-ATTTTACCTCCCTGT
* *
22328918 GGTTACAGTGGAGTATATTGAAGCCAGAAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAA
194 GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCT-GGCAGCAGTGGAATAGATTGAA
* * *
22328983 GA-TTACAGGTCTTATCTCCCTAAGCAGTAG-AGGAGCAGATCAAATATGACAGATTTTACCTCC
258 GATTTA-AGATCTTATCTCCCTAAGCAGTAGTA-GAGCAGATCAAAGATGGCAGATTTTACCTCC
* *
22329046 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA-TCTCCCTGGGCGAC-GTGGAATAGA
321 CTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAACAGTGGAATAGA
* *
22329109 TTGGAGATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAACAGATCAAAGATGGCAAATTTTACC
385 TTGGAGATTTCAGATCTTGTCTCCCT-AGCAGTAGTGGAGCAGATCAAAGATGGCAAATTTTACC
* * * *
22329174 TCCCTGAGGTTGCAGTGGAGTATATTGAAGCCAGTAATTC
449 TCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTC
22329214 TATTCCTCCG
Statistics
Matches: 1050, Mismatches: 87, Indels: 30
0.90 0.07 0.03
Matches are distributed among these distances:
659 104 0.10
660 15 0.01
661 876 0.83
662 48 0.05
663 1 0.00
664 3 0.00
665 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (657 bp):
CAGATCTTGTCTCCCCAAGCAGTAGTGGGGCAGATCAAAGATGGGAATTTTACCTCCCTGTGGTT
ACAGTGGAGTACATTGAAGCCAATAATTTTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATT
TCAGATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGG
TTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGCAGCAGTGGAATAGATTGAAGAT
TTAAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTG
GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGGAG
ATTTCAGATCTTGTCTCCCTAGCAGTAGTGGAGCAGATCAAAGATGGCAAATTTTACCTCCCTGT
GGTTACAGTGGAGTACATTGAAGCCAATAATTCAACTTCCCTGGACAGCAGTGGAATAGATTAAA
GATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCT
ATGGTTACAGTGGAGTACATTGAAGCCAATAATTCAACTTCCTTGGACAGTAGTGGAATAGATTA
AAGATTT
Found at i:22331151 original size:21 final size:21
Alignment explanation
Indices: 22331109--22331151 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
22331099 CTTTTGAATC
**
22331109 ATTTTATTATTTTATTTATAT
1 ATTTTATTATTTTATACATAT
*
22331130 ATTTTATTATTTTATACGTAT
1 ATTTTATTATTTTATACATAT
22331151 A
1 A
22331152 CCTTTTTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (21 bp):
ATTTTATTATTTTATACATAT
Found at i:22333975 original size:35 final size:37
Alignment explanation
Indices: 22333904--22333989 Score: 88
Period size: 36 Copynumber: 2.4 Consensus size: 37
22333894 AAATGTTTTC
* *
22333904 TAAAAAATATAAAAAATTTCTATTTTAAATCAAATTA
1 TAAAATATATAAAAAATTTCTATTGTAAATCAAATTA
** **
22333941 -ATTATATATAAAAATATTT-TA-TGTAAATTTAATTA
1 TAAAATATATAAAAA-ATTTCTATTGTAAATCAAATTA
22333976 TAAAATATATAAAA
1 TAAAATATATAAAA
22333990 TTTTAGCATA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
35 11 0.28
36 24 0.62
37 4 0.10
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (37 bp):
TAAAATATATAAAAAATTTCTATTGTAAATCAAATTA
Found at i:22334734 original size:16 final size:17
Alignment explanation
Indices: 22334703--22334735 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
22334693 TTTAAATTTT
*
22334703 TATGTTTTTGTTTAAAA
1 TATGATTTTGTTTAAAA
22334720 TATGATTTT-TTTAAAA
1 TATGATTTTGTTTAAAA
22334736 AAAATTATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (17 bp):
TATGATTTTGTTTAAAA
Found at i:22342607 original size:46 final size:46
Alignment explanation
Indices: 22342589--22342693 Score: 165
Period size: 46 Copynumber: 2.3 Consensus size: 46
22342579 TGACAAGTGG
* ** *
22342589 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC
*
22342635 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC
22342681 AAAGTGATAAGTG
1 AAAGTGATAAGTG
22342694 GCTACACTTA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 54 1.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC
Found at i:22342701 original size:37 final size:37
Alignment explanation
Indices: 22342657--22342802 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
22342647 GATAGCTTTA
*
22342657 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
22342694 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
22342731 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
22342768 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
22342803 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:22345368 original size:25 final size:24
Alignment explanation
Indices: 22345340--22345392 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
22345330 CTACAATAAT
* *
22345340 AAAATCTAATCTAAAAAGGAAAGAG
1 AAAACCTAAACTAAAAAGGAAA-AG
*
22345365 AAAACCTAAACTAAAAATGAAAAG
1 AAAACCTAAACTAAAAAGGAAAAG
22345389 AAAA
1 AAAA
22345393 AGAAAAAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.66, C:0.09, G:0.11, T:0.13
Consensus pattern (24 bp):
AAAACCTAAACTAAAAAGGAAAAG
Found at i:22345403 original size:17 final size:18
Alignment explanation
Indices: 22345377--22345410 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
22345367 AACCTAAACT
22345377 AAAAATGAAAAGAAAAAG
1 AAAAATGAAAAGAAAAAG
22345395 AAAAA-GAAAAGAAAAA
1 AAAAATGAAAAGAAAAA
22345411 CCCTAACCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (18 bp):
AAAAATGAAAAGAAAAAG
Found at i:22345645 original size:22 final size:22
Alignment explanation
Indices: 22345620--22345677 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
22345610 TTATACAACA
*
22345620 AGGGTATCGTGATACTCAGGGG
1 AGGGTATCGTGATACCCAGGGG
* ** *
22345642 AGGGTACCGCAATACCCATGGG
1 AGGGTATCGTGATACCCAGGGG
22345664 AGGGTATCGTGATA
1 AGGGTATCGTGATA
22345678 TCCTTATCAG
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.26, C:0.17, G:0.36, T:0.21
Consensus pattern (22 bp):
AGGGTATCGTGATACCCAGGGG
Found at i:22347705 original size:6 final size:6
Alignment explanation
Indices: 22347694--22347740 Score: 94
Period size: 6 Copynumber: 7.8 Consensus size: 6
22347684 TTTCAATGAT
22347694 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATAT
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATAT
22347741 TTAATTTCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (6 bp):
TATATG
Found at i:22348894 original size:16 final size:16
Alignment explanation
Indices: 22348847--22348894 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
22348837 ATTTTATGAA
22348847 TAGTTGTTT-TTCAGTT
1 TAGTT-TTTATTCAGTT
*
22348863 TAGTTTTTATTAAGTT
1 TAGTTTTTATTCAGTT
22348879 T-GTTTTTACTTCAGTT
1 TAGTTTTTA-TTCAGTT
22348895 GTAATTTAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 10 0.36
16 18 0.64
ACGTcount: A:0.17, C:0.06, G:0.15, T:0.62
Consensus pattern (16 bp):
TAGTTTTTATTCAGTT
Found at i:22350581 original size:23 final size:24
Alignment explanation
Indices: 22350551--22350595 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
22350541 AATTAGTATG
22350551 AATATATA-ATATTCAAACATTTT
1 AATATATATATATTCAAACATTTT
*
22350574 AATATATATATTTTCAAACATT
1 AATATATATATATTCAAACATT
22350596 GCATTTAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (24 bp):
AATATATATATATTCAAACATTTT
Found at i:22352759 original size:13 final size:13
Alignment explanation
Indices: 22352741--22352770 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
22352731 ATTGCTAAGA
22352741 AATAATATCCCAT
1 AATAATATCCCAT
*
22352754 AATAATATCCTAT
1 AATAATATCCCAT
22352767 AATA
1 AATA
22352771 TCCCATTAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (13 bp):
AATAATATCCCAT
Found at i:22352802 original size:56 final size:56
Alignment explanation
Indices: 22352716--22352821 Score: 178
Period size: 56 Copynumber: 1.9 Consensus size: 56
22352706 ACACTTTAAC
22352716 CCCATTACAAATCAAATTGCTAAGAAATAATATCCCATAATAATATCCTATAATAT
1 CCCATTACAAATCAAATTGCTAAGAAATAATATCCCATAATAATATCCTATAATAT
**
22352772 CCCATTAGGAATCAAATTGCTAA-AAGATAATATCCCATAATAATATCCTA
1 CCCATTACAAATCAAATTGCTAAGAA-ATAATATCCCATAATAATATCCTA
22352822 ACAACACCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
55 2 0.04
56 45 0.96
ACGTcount: A:0.45, C:0.20, G:0.06, T:0.29
Consensus pattern (56 bp):
CCCATTACAAATCAAATTGCTAAGAAATAATATCCCATAATAATATCCTATAATAT
Found at i:22354883 original size:15 final size:15
Alignment explanation
Indices: 22354863--22354902 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
22354853 TTTATTTCTA
22354863 TATTATATTCATTAT
1 TATTATATTCATTAT
22354878 TATTAT-TATCATTAT
1 TATTATAT-TCATTAT
22354893 TATTTATATT
1 TA-TTATATT
22354903 AGTATAACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 1 0.05
15 15 0.68
16 5 0.23
17 1 0.05
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (15 bp):
TATTATATTCATTAT
Found at i:22359242 original size:31 final size:31
Alignment explanation
Indices: 22359207--22359268 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
22359197 ATTCCTTTTC
*
22359207 ATTTCA-TTCATAACTAAAATATTCTTTTATT
1 ATTTCATTTC-TAACCAAAATATTCTTTTATT
*
22359238 ATTTCATTTCTAGCCAAAATATTCTTTTATT
1 ATTTCATTTCTAACCAAAATATTCTTTTATT
22359269 TCATTCTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 25 0.89
32 3 0.11
ACGTcount: A:0.32, C:0.15, G:0.02, T:0.52
Consensus pattern (31 bp):
ATTTCATTTCTAACCAAAATATTCTTTTATT
Found at i:22361264 original size:44 final size:44
Alignment explanation
Indices: 22361196--22361543 Score: 328
Period size: 44 Copynumber: 7.8 Consensus size: 44
22361186 CATTATGGCA
* * *
22361196 AATCTTATCTCCCTGAAGTCGCAGTGGAGCAGATTAAAGCCACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACT
* * *
22361240 AATTTTATCCCCCTGAAGTTGCAGTGGGGCAGATTGAAGCTAC-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACT
* * * *
22361283 AAGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCG
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CT
* * * * *
22361329 AATCTTATTTCCTTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC--T--ACT
* * * * *
22361377 GCAGATCTTATCTCTCTGAAGTTGCAGTAGAGAAGA-T-CA--TATCA
1 --A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CT
* * * * *
22361421 AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGGTTGAAGATACC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACT
*
22361465 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACT
*
22361509 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
22361544 AAAACGACAA
Statistics
Matches: 242, Mismatches: 47, Indels: 30
0.76 0.15 0.09
Matches are distributed among these distances:
41 26 0.11
42 2 0.01
43 4 0.02
44 143 0.59
45 35 0.14
46 2 0.01
47 1 0.00
49 2 0.01
50 2 0.01
51 25 0.10
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACT
Found at i:22361447 original size:92 final size:95
Alignment explanation
Indices: 22361286--22361459 Score: 228
Period size: 92 Copynumber: 1.9 Consensus size: 95
22361276 AAGCTACAAG
* * * *
22361286 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCTTAAAGTTGC
1 TCTTATCTCTCTGAAGTTGCAGT-GAGCAGACAGAACATAGCAAATCTTATCTCCTTAAAGTTGC
22361351 AGTGGAACAGATTGAAGCTATAAATTGCAGA
65 AGTGGAACAGATTGAAGCTATAAATTGCAGA
* * * *
22361382 TCTTATCTCTCTGAAGTTGCAGT-AG-AGA-AGATCATATCAAATCTTATCTCCTTGAAGTTGTA
1 TCTTATCTCTCTGAAGTTGCAGTGAGCAGACAGAACATAGCAAATCTTATCTCCTTAAAGTTGCA
* *
22361444 GTGGAGCAGGTTGAAG
66 GTGGAACAGATTGAAG
22361460 ATACCAATCT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
92 40 0.59
93 3 0.04
94 2 0.03
96 23 0.34
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.32
Consensus pattern (95 bp):
TCTTATCTCTCTGAAGTTGCAGTGAGCAGACAGAACATAGCAAATCTTATCTCCTTAAAGTTGCA
GTGGAACAGATTGAAGCTATAAATTGCAGA
Found at i:22361575 original size:44 final size:44
Alignment explanation
Indices: 22361419--22361560 Score: 151
Period size: 44 Copynumber: 3.2 Consensus size: 44
22361409 AAGATCATAT
* * * * * *
22361419 CAAATCTTATCTCCTTGAAGTTGTAGTGGAGCAGGTTGAAGA-TA
1 CAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAACGA
* * * * * *
22361463 CCAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTA
1 CAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACGA
*
22361507 CTAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACGA
1 CAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACGA
22361551 CAAATCCTAT
1 CAAATCCTAT
22361561 ACCTTTGAAG
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
43 1 0.01
44 81 0.99
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
CAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACGA
Found at i:22365396 original size:28 final size:28
Alignment explanation
Indices: 22365365--22365418 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
22365355 AAGGCCGTTT
22365365 TTTTTCAA-AATTTACCGAAATGGGCCGG
1 TTTTT-AATAATTTACCGAAATGGGCCGG
* *
22365393 TTTTTAATTATTTACCGGAATGGGCC
1 TTTTTAATAATTTACCGAAATGGGCC
22365419 ATTTTCCGCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 2 0.09
28 21 0.91
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (28 bp):
TTTTTAATAATTTACCGAAATGGGCCGG
Found at i:22366301 original size:40 final size:39
Alignment explanation
Indices: 22366228--22366345 Score: 109
Period size: 40 Copynumber: 2.9 Consensus size: 39
22366218 ACTGTTCATG
22366228 CCACGTCAGCAAATCGCGTCCTAGA-G-GGA-GCGATTTCCTT
1 CCACGTCAGCAAATCGCG--CT-GACGTGGACGCGATTTCC-T
22366268 CCACGTCAGCAAATCGCGCTGACGTGGACGCGATTTCCT
1 CCACGTCAGCAAATCGCGCTGACGTGGACGCGATTTCCT
* * * *
22366307 GCGCGT-ACCCTGACATCGCGCTGACGTGGACGCGATTTC
1 CCACGTCA-GC--AAATCGCGCTGACGTGGACGCGATTTC
22366346 GCGGAAAATG
Statistics
Matches: 68, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
37 2 0.03
38 4 0.06
39 9 0.13
40 27 0.40
41 26 0.38
ACGTcount: A:0.19, C:0.32, G:0.27, T:0.21
Consensus pattern (39 bp):
CCACGTCAGCAAATCGCGCTGACGTGGACGCGATTTCCT
Found at i:22371480 original size:16 final size:17
Alignment explanation
Indices: 22371459--22371491 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
22371449 AGTTGTTGAA
22371459 AAAATTAAT-TTAATTG
1 AAAATTAATATTAATTG
22371475 AAAATTAATATTAATTG
1 AAAATTAATATTAATTG
22371492 TTTTATACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (17 bp):
AAAATTAATATTAATTG
Found at i:22371849 original size:15 final size:16
Alignment explanation
Indices: 22371825--22371857 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
22371815 TTTTATAAAC
22371825 TGAAAAAATAA-GTGT
1 TGAAAAAATAAGGTGT
*
22371840 TGAAAGAATAAGGTGT
1 TGAAAAAATAAGGTGT
22371856 TG
1 TG
22371858 TTTGATCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.45, C:0.00, G:0.27, T:0.27
Consensus pattern (16 bp):
TGAAAAAATAAGGTGT
Found at i:22372580 original size:24 final size:23
Alignment explanation
Indices: 22372533--22372580 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
22372523 TTAAAATAAA
* *
22372533 ATAAAATAAATTTAAAGAACAAT
1 ATAAAATAAATTAAAAGAAAAAT
*
22372556 ATAAAATTAAATTAAAATAAAAAT
1 ATAAAA-TAAATTAAAAGAAAAAT
22372580 A
1 A
22372581 ATTGAAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 6 0.29
24 15 0.71
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (23 bp):
ATAAAATAAATTAAAAGAAAAAT
Found at i:22373506 original size:15 final size:15
Alignment explanation
Indices: 22373486--22373542 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
22373476 ATTCAATATT
22373486 AATATTTTAATAATA
1 AATATTTTAATAATA
*
22373501 AATATTTATTAAAATTATA
1 AATA-TT-TT--AATAATA
*
22373520 AATATATTAATAATA
1 AATATTTTAATAATA
22373535 AATATTTT
1 AATATTTT
22373543 TTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:22387604 original size:74 final size:74
Alignment explanation
Indices: 22387511--22387661 Score: 302
Period size: 74 Copynumber: 2.0 Consensus size: 74
22387501 TCAACCTTTA
22387511 AATTTTTTTTAATTGTGTTTGATAACAATATTAATTTTTTAAGTAATATAAAATTTTAAACAAAA
1 AATTTTTTTTAATTGTGTTTGATAACAATATTAATTTTTTAAGTAATATAAAATTTTAAACAAAA
22387576 AAAGTGTTG
66 AAAGTGTTG
22387585 AATTTTTTTTAATTGTGTTTGATAACAATATTAATTTTTTAAGTAATATAAAATTTTAAACAAAA
1 AATTTTTTTTAATTGTGTTTGATAACAATATTAATTTTTTAAGTAATATAAAATTTTAAACAAAA
22387650 AAAGTGTTG
66 AAAGTGTTG
22387659 AAT
1 AAT
22387662 ATGATAAGTA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 77 1.00
ACGTcount: A:0.42, C:0.03, G:0.09, T:0.46
Consensus pattern (74 bp):
AATTTTTTTTAATTGTGTTTGATAACAATATTAATTTTTTAAGTAATATAAAATTTTAAACAAAA
AAAGTGTTG
Found at i:22393563 original size:10 final size:10
Alignment explanation
Indices: 22393550--22393575 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
22393540 TATTTATTTG
22393550 ATATTTGTAA
1 ATATTTGTAA
22393560 ATATTTGTAA
1 ATATTTGTAA
22393570 ATATTT
1 ATATTT
22393576 TTTTAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (10 bp):
ATATTTGTAA
Found at i:22394823 original size:21 final size:21
Alignment explanation
Indices: 22394799--22394847 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
22394789 CGCTGTTTCT
** *
22394799 AATCTCACTGTTACAGTATCC
1 AATCTCACTACTACAGTAACC
*
22394820 AATCTCACTACTACAGTAACT
1 AATCTCACTACTACAGTAACC
22394841 AATCTCA
1 AATCTCA
22394848 AGGCAACCGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.35, C:0.29, G:0.06, T:0.31
Consensus pattern (21 bp):
AATCTCACTACTACAGTAACC
Found at i:22396222 original size:23 final size:24
Alignment explanation
Indices: 22396188--22396236 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
22396178 ATTTTTACAC
22396188 TTTTT-AATTTTTTTAAAAAATAA
1 TTTTTAAATTTTTTTAAAAAATAA
*
22396211 TTTTTAAATTTTTTTAAAAATTAA
1 TTTTTAAATTTTTTTAAAAAATAA
22396235 TT
1 TT
22396237 AATTATTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
TTTTTAAATTTTTTTAAAAAATAA
Found at i:22397014 original size:27 final size:27
Alignment explanation
Indices: 22396964--22397015 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
22396954 GTTAAAAGCC
* *
22396964 GTTACTAAGTCTGTTAGTAGTTAAGTG
1 GTTACTAAGTCTGTTAGCAATTAAGTG
22396991 GTTACTAAGT-TGGTTAGCAATTAAG
1 GTTACTAAGTCT-GTTAGCAATTAAG
22397016 AAGTTAGCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 1 0.05
27 21 0.95
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (27 bp):
GTTACTAAGTCTGTTAGCAATTAAGTG
Found at i:22397021 original size:27 final size:27
Alignment explanation
Indices: 22396964--22397021 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
22396954 GTTAAAAGCC
* * **
22396964 GTTACTAAGTCTGTTAGTAGTTAAGTG
1 GTTACTAAGTCTGTTAGCAATTAAGAA
22396991 GTTACTAAGT-TGGTTAGCAATTAAGAA
1 GTTACTAAGTCT-GTTAGCAATTAAGAA
22397018 GTTA
1 GTTA
22397022 GCTGCTGCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (27 bp):
GTTACTAAGTCTGTTAGCAATTAAGAA
Found at i:22401093 original size:10 final size:10
Alignment explanation
Indices: 22401078--22401111 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
22401068 TGTAGGGAGT
22401078 GGTTGCTTAA
1 GGTTGCTTAA
22401088 GGTTGCTTAA
1 GGTTGCTTAA
22401098 GGTTGCTTAA
1 GGTTGCTTAA
22401108 GGTT
1 GGTT
22401112 ACTATGAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.18, C:0.09, G:0.32, T:0.41
Consensus pattern (10 bp):
GGTTGCTTAA
Found at i:22401251 original size:25 final size:25
Alignment explanation
Indices: 22401223--22401274 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
22401213 ACTCATTTTA
22401223 TTATTCCTTTTGAGCTGGTACAAGG
1 TTATTCCTTTTGAGCTGGTACAAGG
22401248 TTATTCCTTTTGAGCTGGTACAAGG
1 TTATTCCTTTTGAGCTGGTACAAGG
22401273 TT
1 TT
22401275 GTTATGCTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.19, C:0.15, G:0.23, T:0.42
Consensus pattern (25 bp):
TTATTCCTTTTGAGCTGGTACAAGG
Found at i:22407766 original size:4 final size:4
Alignment explanation
Indices: 22407757--22407790 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
22407747 AAGTTTTATT
22407757 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
22407791 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:22407798 original size:22 final size:22
Alignment explanation
Indices: 22407740--22407799 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
22407730 AAGTGGCCCA
*
22407740 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
22407764 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
22407785 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
22407800 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:22417968 original size:22 final size:22
Alignment explanation
Indices: 22417943--22417988 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
22417933 CTTGGAATAT
22417943 TTGGAGTGTTTCATTAGAACAC
1 TTGGAGTGTTTCATTAGAACAC
*
22417965 TTGGAGTGTTTCATTGGAACAC
1 TTGGAGTGTTTCATTAGAACAC
22417987 TT
1 TT
22417989 ATAAATATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.39
Consensus pattern (22 bp):
TTGGAGTGTTTCATTAGAACAC
Found at i:22422627 original size:22 final size:21
Alignment explanation
Indices: 22422587--22422627 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
22422577 ACATAAATAT
22422587 ATTTGTAAAAATTATATTAGA
1 ATTTGTAAAAATTATATTAGA
22422608 ATTT-TAAAATATATATATTA
1 ATTTGTAAAA-AT-TATATTA
22422628 ATAACTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 6 0.33
22 7 0.39
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (21 bp):
ATTTGTAAAAATTATATTAGA
Found at i:22434520 original size:35 final size:36
Alignment explanation
Indices: 22434480--22434548 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
22434470 CTAGGATCAT
22434480 ATATCTCT-AAAGATCACCTTCCATATTTGCCAAAC
1 ATATCTCTGAAAGATCACCTTCCATATTTGCCAAAC
* * * *
22434515 ATATCTTTGGAAGATCACTTTCCTTATTTGCCAA
1 ATATCTCTGAAAGATCACCTTCCATATTTGCCAA
22434549 GCTCCGGAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 7 0.24
36 22 0.76
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.36
Consensus pattern (36 bp):
ATATCTCTGAAAGATCACCTTCCATATTTGCCAAAC
Found at i:22454512 original size:18 final size:18
Alignment explanation
Indices: 22454491--22454525 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22454481 TGCTTGTTTA
*
22454491 CTTTTACTTTCTCATTTC
1 CTTTTAATTTCTCATTTC
*
22454509 CTTTTAATTTTTCATTT
1 CTTTTAATTTCTCATTT
22454526 TTCATCTTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.20, G:0.00, T:0.66
Consensus pattern (18 bp):
CTTTTAATTTCTCATTTC
Found at i:22456232 original size:14 final size:15
Alignment explanation
Indices: 22456177--22456234 Score: 57
Period size: 16 Copynumber: 3.9 Consensus size: 15
22456167 AAATAATTTA
* *
22456177 ATTATATTTAAACAT
1 ATTATAATTAAATAT
*
22456192 AATTATTATTAAATAT
1 -ATTATAATTAAATAT
22456208 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
22456222 A-TATAATTTAATA
1 ATTATAATTAAATA
22456235 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
13 9 0.25
14 4 0.11
15 11 0.31
16 12 0.33
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:22456429 original size:26 final size:28
Alignment explanation
Indices: 22456400--22456460 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
22456390 TATGAATTTG
*
22456400 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
22456426 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
22456454 TAAAATT
1 TATAATT
22456461 ATTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:22456461 original size:91 final size:89
Alignment explanation
Indices: 22456366--22456582 Score: 299
Period size: 91 Copynumber: 2.4 Consensus size: 89
22456356 AATTTAAAAT
* * * *
22456366 AATTATAACTAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAA
1 AATTATAA-TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
22456431 TTTAATAATAATATATAATTTCATAA
64 TTTAATAATAATATATAATTTCATAA
* *
22456457 AATTATTGATAATAATTTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
1 AATTA-TAATAATAA-ATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
*
22456522 TTTAATAATGATATATAATTTCATAA
64 TTTAATAATAATATATAATTTCATAA
*
22456548 AATTCTTAATAATAAAATGTTCTTATATGAATTTA
1 AATT-ATAATAAT-AAAT-TTCTTATATGAATTTA
22456583 CTAAAATCAA
Statistics
Matches: 111, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
91 89 0.80
92 22 0.20
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (89 bp):
AATTATAATAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATT
TAATAATAATATATAATTTCATAA
Found at i:22456463 original size:44 final size:42
Alignment explanation
Indices: 22456400--22456542 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 42
22456390 TATGAATTTG
22456400 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTATTATTA-ATATAATTTAATAAT-ATA
* ** *
22456444 TATAATTTCATAA-AATTATTGA-TAATAATTTTTCTTATATGAATTTA
1 TATAATTT-AAAATAATTATT-ATTAAT-A-TAAT-TTA-AT-AATATA
* *
22456491 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTATTATT-AATATAATTTAATAAT-ATA
22456535 TATAATTT
1 TATAATTT
22456543 CATAAAATTC
Statistics
Matches: 77, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
43 5 0.06
44 29 0.38
45 9 0.12
46 9 0.12
47 19 0.25
48 6 0.08
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (42 bp):
TATAATTTAAAATAATTATTATTAATATAATTTAATAATATA
Found at i:22456557 original size:47 final size:47
Alignment explanation
Indices: 22456407--22456563 Score: 128
Period size: 47 Copynumber: 3.4 Consensus size: 47
22456397 TTGTATAATT
* * * * *
22456407 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
* ** * *
22456454 TAAAATTATTGATAAT-AAT-T--TTTCTTATATGAATTTATACAATT--
1 TAAAATTATTAATAATAAATATAATTTAATA-ATG-ATATATA-ATTTCA
* *
22456498 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
*
22456545 TAAAATTCTTAATAATAAA
1 TAAAATTATTAATAATAAA
22456564 ATGTTCTTAT
Statistics
Matches: 81, Mismatches: 20, Indels: 18
0.68 0.17 0.15
Matches are distributed among these distances:
43 5 0.06
44 15 0.19
45 13 0.16
46 12 0.15
47 31 0.38
48 5 0.06
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.45
Consensus pattern (47 bp):
TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
Found at i:22460045 original size:69 final size:69
Alignment explanation
Indices: 22459934--22460070 Score: 211
Period size: 69 Copynumber: 2.0 Consensus size: 69
22459924 TGATTTCCAT
*
22459934 TTTCATATTCTACTGACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAATTGCCAGA
1 TTTCATATTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAATTGCCAGA
22459999 ACAG
66 ACAG
* * * * * *
22460003 TTTCATCTTCTACTCACTAACAAATTAATAACATTTTCCAGCAGACTATCAAAACAATTTCCAGA
1 TTTCATATTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAATTGCCAGA
22460068 ACA
66 ACA
22460071 AATCAACAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.27
Consensus pattern (69 bp):
TTTCATATTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAATTGCCAGA
ACAG
Found at i:22461510 original size:36 final size:37
Alignment explanation
Indices: 22461426--22461533 Score: 137
Period size: 36 Copynumber: 2.9 Consensus size: 37
22461416 GGCAGAAACT
* *
22461426 GAGCAAATCAGCCGAAAAAGAAAAGAAAAGAAACGGGGG
1 GAGCAAATCGGCAG-AAAAGAAAAGAAAAGAAAC-GGGG
* * *
22461465 GAGCAAATCGGCAGAAAAGAAAATAAAATAAAC-TGG
1 GAGCAAATCGGCAGAAAAGAAAAGAAAAGAAACGGGG
*
22461501 GAGCAAATCGGCAGAAAAGAAAAGCAAAGAAAC
1 GAGCAAATCGGCAGAAAAGAAAAGAAAAGAAAC
22461534 AAGGAAGCAG
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
36 32 0.52
38 17 0.28
39 12 0.20
ACGTcount: A:0.56, C:0.13, G:0.26, T:0.06
Consensus pattern (37 bp):
GAGCAAATCGGCAGAAAAGAAAAGAAAAGAAACGGGG
Found at i:22462356 original size:16 final size:17
Alignment explanation
Indices: 22462295--22462356 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 17
22462285 CAATATTCAA
22462295 AATTAT-TAATTATTAATT
1 AATTATATAATT-TTAA-T
* *
22462313 AATTATATTATTTAAAT
1 AATTATATAATTTTAAT
22462330 AATGTATTATAATTTTAA-
1 AAT-TA-TATAATTTTAAT
22462348 AATTATATA
1 AATTATATA
22462357 TACTCTATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
16 4 0.11
17 6 0.16
18 14 0.38
19 13 0.35
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
AATTATATAATTTTAAT
Found at i:22462726 original size:21 final size:22
Alignment explanation
Indices: 22462700--22462754 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
22462690 TAAAGCAGCC
*
22462700 TAAACCCCAAAC-CTCAAATCT
1 TAAACCCCAAACTCTCAAACCT
*
22462721 TAAACCCCAAACTCTTAAACCT
1 TAAACCCCAAACTCTCAAACCT
*
22462743 TAAACCCAAAAC
1 TAAACCCCAAAC
22462755 ACCATACACT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 12 0.40
22 18 0.60
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (22 bp):
TAAACCCCAAACTCTCAAACCT
Found at i:22462731 original size:14 final size:15
Alignment explanation
Indices: 22462708--22462741 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
22462698 CCTAAACCCC
*
22462708 AAACCTCAAA-TCTT
1 AAACCCCAAACTCTT
22462722 AAACCCCAAACTCTT
1 AAACCCCAAACTCTT
22462737 AAACC
1 AAACC
22462742 TTAAACCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21
Consensus pattern (15 bp):
AAACCCCAAACTCTT
Found at i:22462747 original size:15 final size:15
Alignment explanation
Indices: 22462708--22462747 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
22462698 CCTAAACCCC
22462708 AAACCTCAAA-TCTT
1 AAACCTCAAACTCTT
*
22462722 AAACCCCAAACTCTT
1 AAACCTCAAACTCTT
*
22462737 AAACCTTAAAC
1 AAACCTCAAAC
22462748 CCAAAACACC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.45, C:0.33, G:0.00, T:0.23
Consensus pattern (15 bp):
AAACCTCAAACTCTT
Found at i:22463025 original size:166 final size:167
Alignment explanation
Indices: 22462719--22463026 Score: 376
Period size: 166 Copynumber: 1.9 Consensus size: 167
22462709 AACCTCAAAT
* * * *
22462719 CTTAAACCCCAAACTCTTAAACCTTAAACCCAAAACACCATACACTACATCATAAACCCTAAACT
1 CTTAAACCCCAAACTCTCAAACCCTAAACCAAAAACACCATACACTACATCATAAACCCTAAACC
* * * * *
22462784 CAAAACTCTAATATTCACAAAATATTAAACATTATATAATGATTAACCCTAAAACTCTAAACTAT
66 CAAAACTATAATATCCACAAAATAATAAACATTATATAATGATTAACCCTAAAACTCTAAACCAA
22462849 ATACGATAAACTTTTTAACTTATAATAATCACTGAAC
131 ATACGATAAACTTTTTAACTTATAATAATCACTGAAC
* * ** * *
22462886 CTTAATCCTCAAACTCTCAAACCCTAAACCAAAAACATTATAC-CTACATCGTAAACTCTAAACC
1 CTTAAACCCCAAACTCTCAAACCCTAAACCAAAAACACCATACACTACATCATAAACCCTAAACC
* *
22462950 CTAAACTAT-A-ATCCA-AAAATAATAAACATTATATAATGATCCCTAATACCCT-AAAC-GTAA
66 CAAAACTATAATATCCACAAAATAATAAACATTATATAATGAT---T-A-ACCCTAAAACTCTAA
22463010 ACCAAATACGATAAACT
126 ACCAAATACGATAAACT
22463027 AAATATATAA
Statistics
Matches: 119, Mismatches: 17, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
163 24 0.20
164 4 0.03
165 1 0.01
166 44 0.37
167 41 0.34
168 5 0.04
ACGTcount: A:0.46, C:0.25, G:0.02, T:0.26
Consensus pattern (167 bp):
CTTAAACCCCAAACTCTCAAACCCTAAACCAAAAACACCATACACTACATCATAAACCCTAAACC
CAAAACTATAATATCCACAAAATAATAAACATTATATAATGATTAACCCTAAAACTCTAAACCAA
ATACGATAAACTTTTTAACTTATAATAATCACTGAAC
Found at i:22463274 original size:115 final size:112
Alignment explanation
Indices: 22463063--22463689 Score: 557
Period size: 114 Copynumber: 5.5 Consensus size: 112
22463053 ATGCATGGTT
* *
22463063 AAGACCAAAACTG-TGCGTTTTGGTTAAGATATTTGGCGGCGCTTCCCAAAAAGCGCCGCTAATA
1 AAGA-CAAAAC-GCTGCGTTTTGGTTAAGATATTTTGCGGCGCTT-CTAAAAAGCGCCGCTAATA
* * * * * * *
22463127 ATATGCTTTAACGGTGATTTCTCGTGAACGCCACTAATTCCAGTATACATC
63 GTATGCTTTAGCGGCGTTTTCCCAT-AACGCCACTAATTCTAGTATACATC
* * * *
22463178 AAGACTTAAACGCAGCGTTTTGGTTAATATATTTTGCGGCGCTTTTAAAAACGCGCCGCTAATAG
1 AAGAC-AAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTAAAAA-GCGCCGCTAATAG
* * * * *
22463243 AATGCTATAGCGTCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
64 TATGCTTTAGCGGCGTTTTCCCATAA-CGCCACTAATTCTAGTATACATC
* * * * **
22463293 AAGACCAAACTCTGCGTTTTGGTGT--GCATATCTTGCGGCGCTTATCGCAAAGCGCCGCTAATA
1 AAGACAAAACGCTGCGTTTTGGT-TAAG-ATATTTTGCGGCGCTTCT-AAAAAGCGCCGCTAATA
* ** * * *
22463356 CTATTATTTAGCGGCATTTT-CTAGTAAGCGCCACTAATTATAGTATACATC
63 GTATGCTTTAGCGGCGTTTTCCCA-TAA-CGCCACTAATTCTAGTATACATC
* * * * * *
22463407 AAGACCAAAACGCTGAGTTTTGGTTAACAAAATTTAGCGGCGCTTCTCCAAACGCGCCGCTAATA
1 AAGA-CAAAACGCTGCGTTTTGGTTAA-GATATTTTGCGGCGCTTCT-AAAAAGCGCCGCTAATA
* * ** *
22463472 GTACGCTTTAGTGGCGTTTT-CCATTTTCGCCACTAATTCTAGTATACTTC
63 GTATGCTTTAGCGGCGTTTTCCCA-TAACGCCACTAATTCTAGTATACATC
* * * * *
22463522 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTACGGCGCTTCTAAAAAATCACCGCTAAT-GT
1 AAGACAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCT-AAAAAGCGCCGCTAATAG-
* *
22463586 TATGCTTTAGCGGCGTTTTTCCC-TAACGCCACTAATTGTATTATACATC
64 TATGCTTTAGCGGCG-TTTTCCCATAACGCCACTAATTCTAGTATACATC
* * * *
22463635 GAGACCAAAACGCTGCGTTTTGGTTAAGATTTTTTGCGGCACTTCTAATAAGCGC
1 AAGA-CAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTAAAAAGCGC
22463690 AACTAATTCT
Statistics
Matches: 408, Mismatches: 88, Indels: 34
0.77 0.17 0.06
Matches are distributed among these distances:
112 1 0.00
113 72 0.18
114 153 0.38
115 136 0.33
116 46 0.11
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (112 bp):
AAGACAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTAAAAAGCGCCGCTAATAGTA
TGCTTTAGCGGCGTTTTCCCATAACGCCACTAATTCTAGTATACATC
Found at i:22463505 original size:229 final size:227
Alignment explanation
Indices: 22463063--22463661 Score: 632
Period size: 229 Copynumber: 2.6 Consensus size: 227
22463053 ATGCATGGTT
* * ***
22463063 AAGACCAAAACTGTGCGTTTTGGTTAAGATAT-TTGGCGGCGCTTCCCAAAAAGCGCCGCTAATA
1 AAGACC-AAACTCTGCGTTTTGGTT-AGATATCTT-ACGGCGCTTATAAAAAAGCGCCGCTAATA
* * ** **
22463127 ATATGCTTTAACGGTGA-TTTCTCGTGAACGCCACTAATTCCAGTATACATCAAGACTTAAACGC
63 ATATGCTTTAGCGG-CATTTTCTCGT-AACGCCACTAATTATAGTATACATCAAGACCAAAACGC
* * * * * * *
22463191 AGCGTTTTGGTTAATATATTTTGCGGCGCTTTTAAAAACGCGCCGCTAATAGAATGCTATAGCGT
126 TGCGTTTTGGTTAAAAAATTTAGCGGCGCTTCTAAAAACGCGCCGCTAATAGAACGCTATAGCGG
22463256 CGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
191 CGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
* *** *
22463293 AAGACCAAACTCTGCGTTTTGGTGT-GCATATCTTGCGGCGCTTATCGCAAAGCGCCGCTAATAC
1 AAGACCAAACTCTGCGTTTTGGT-TAG-ATATCTTACGGCGCTTATAAAAAAGCGCCGCTAATAA
** *
22463357 TATTATTTAGCGGCATTTTCTAGTAAGCGCCACTAATTATAGTATACATCAAGACCAAAACGCTG
64 TATGCTTTAGCGGCATTTTCTCGTAA-CGCCACTAATTATAGTATACATCAAGACCAAAACGCTG
* ** * * *
22463422 AGTTTTGGTTAACAAAATTTAGCGGCGCTTCTCCAAACGCGCCGCTAATAGTACGCTTTAGTGGC
128 CGTTTTGGTTAA-AAAATTTAGCGGCGCTTCTAAAAACGCGCCGCTAATAGAACGCTATAGCGGC
*** * *
22463487 GTTTT-CCATTTTCGCCACTAATTCTAGTATACTTC
192 GTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
* * * * **
22463522 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTACGGCGCTTCTAAAAAATCACCGCTAATGTT
1 AAGACCAAACTCTGCGTTTTGGTT-AGATATCTTACGGCGCTTATAAAAAAGCGCCGCTAATAAT
* * * * *
22463587 ATGCTTTAGCGGCGTTTT-TCCCTAACGCCACTAATTGTATTATACATCGAGACCAAAACGCTGC
65 ATGCTTTAGCGGCATTTTCT-CGTAACGCCACTAATTATAGTATACATCAAGACCAAAACGCTGC
22463651 GTTTTGGTTAA
129 GTTTTGGTTAA
22463662 GATTTTTTGC
Statistics
Matches: 308, Mismatches: 52, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
228 52 0.17
229 200 0.65
230 56 0.18
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (227 bp):
AAGACCAAACTCTGCGTTTTGGTTAGATATCTTACGGCGCTTATAAAAAAGCGCCGCTAATAATA
TGCTTTAGCGGCATTTTCTCGTAACGCCACTAATTATAGTATACATCAAGACCAAAACGCTGCGT
TTTGGTTAAAAAATTTAGCGGCGCTTCTAAAAACGCGCCGCTAATAGAACGCTATAGCGGCGTTT
TCCCATAAGCGCCACTAATTCTAATATACCTC
Found at i:22463976 original size:114 final size:113
Alignment explanation
Indices: 22463682--22463957 Score: 261
Period size: 114 Copynumber: 2.4 Consensus size: 113
22463672 GGCACTTCTA
* ** * ** *
22463682 ATAAGCGCAACTAATTCTAATATACATCAAGATC-AAAACTCTGCGTTTTGGTTATCATATTTGG
1 ATAAGCGCCACTAATTCTAATATACATCAAGA-CAAAAACAATGCGTTTTCGTTAAGAT-TTTTG
* * ** ** * * *
22463746 CAGCGCTTTTCGTAA-GCGCCGCTAAGACTTGTTTTAGTGGCGTGTTTTT
64 CGGCACTTCCCACAATGCGCCGCTAAGACTTGCTTTAGCGGCGTGTTTTC
* * * * *
22463795 GTAAGCGCCACTAATTCTAATATACATCGATACCAAAACAATGTGTTTTCGTTAAGATTTTTTGC
1 ATAAGCGCCACTAATTCTAATATACATCAAGACAAAAACAATGCGTTTTCGTTAAGA-TTTTTGC
*
22463860 GGCACTTCCCACAATGCGCCGCTAATACTTGCTTTAGCGGCGT-TTTCTC
65 GGCACTTCCCACAATGCGCCGCTAAGACTTGCTTTAGCGGCGTGTTT-TC
* * * *
22463909 ATAATCGCCATTAATTCTAGTATACATCAAGACAAAAACGATGCGTTTT
1 ATAAGCGCCACTAATTCTAATATACATCAAGACAAAAACAATGCGTTTT
22463958 GGTCTTGAGA
Statistics
Matches: 129, Mismatches: 30, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
112 1 0.01
113 61 0.47
114 67 0.52
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (113 bp):
ATAAGCGCCACTAATTCTAATATACATCAAGACAAAAACAATGCGTTTTCGTTAAGATTTTTGCG
GCACTTCCCACAATGCGCCGCTAAGACTTGCTTTAGCGGCGTGTTTTC
Found at i:22464554 original size:30 final size:30
Alignment explanation
Indices: 22464518--22464575 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 30
22464508 AAATAAAATC
22464518 TAATCTAAAAA-GAAAAGAAAAGAGAAAACT
1 TAATCTAAAAATGAAAAGAAAAGA-AAAACT
22464548 TAATCTAAAAATGAAAAGAAAAGAAAAA
1 TAATCTAAAAATGAAAAGAAAAGAAAAA
22464576 GAAAGGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 15 0.56
31 12 0.44
ACGTcount: A:0.69, C:0.05, G:0.12, T:0.14
Consensus pattern (30 bp):
TAATCTAAAAATGAAAAGAAAAGAAAAACT
Found at i:22464576 original size:42 final size:40
Alignment explanation
Indices: 22464525--22464606 Score: 103
Period size: 40 Copynumber: 2.0 Consensus size: 40
22464515 ATCTAATCTA
* *
22464525 AAAAGAAAAGAAAAGAGAAAACTTAATCTAAAA-ATGAAAAG
1 AAAAGAAAAG-AAAG-GAAAACCTAACCTAAAACATGAAAAG
22464566 AAAAGAAAAAGAAAGGAAAACCTAACCTAAAACTATGAAAA
1 AAAAG-AAAAGAAAGGAAAACCTAACCTAAAAC-ATGAAAA
22464607 CCCTAGAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
40 15 0.42
41 9 0.25
42 12 0.33
ACGTcount: A:0.67, C:0.09, G:0.13, T:0.11
Consensus pattern (40 bp):
AAAAGAAAAGAAAGGAAAACCTAACCTAAAACATGAAAAG
Found at i:22465464 original size:3 final size:3
Alignment explanation
Indices: 22465456--22465487 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
22465446 ATAATTTGAG
22465456 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
22465488 GATTTTTTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:22466574 original size:16 final size:16
Alignment explanation
Indices: 22466553--22466617 Score: 94
Period size: 16 Copynumber: 4.1 Consensus size: 16
22466543 TTCGCTGTAT
*
22466553 TGGAATAGAGACGTAA
1 TGGAATAGAGGCGTAA
22466569 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
22466585 TGGAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
* *
22466601 TGGATTAGAGGTGTAA
1 TGGAATAGAGGCGTAA
22466617 T
1 T
22466618 AGCAAATCAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.37, C:0.03, G:0.35, T:0.25
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:22466655 original size:45 final size:44
Alignment explanation
Indices: 22466596--22466690 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 44
22466586 GGAATAGAGG
*
22466596 TGTAATGGATTAGAGGTGTAATAGCAAATCAAT-TGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAG--AATCAATGTGTTTGGTTGAA
* * *
22466641 TGTAATGGAATAGAGGTGTAATAGTATTATTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGAATCAATGTGTTTGGTTGAA
22466685 TGTAAT
1 TGTAAT
22466691 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
43 4 0.09
44 18 0.40
45 23 0.51
ACGTcount: A:0.32, C:0.02, G:0.27, T:0.39
Consensus pattern (44 bp):
TGTAATGGAATAGAGGTGTAATAGAATCAATGTGTTTGGTTGAA
Found at i:22466868 original size:16 final size:16
Alignment explanation
Indices: 22466831--22466872 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
22466821 TTAATCATAT
*
22466831 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
22466847 TT-AAATATATTATAA
1 TTAAAATATATTATAA
22466862 TTAAAATATAT
1 TTAAAATATAT
22466873 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:22466879 original size:14 final size:15
Alignment explanation
Indices: 22466840--22466881 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
22466830 TTTAAACATA
*
22466840 ATTATTATTAAATAT
1 ATTATAATTAAATAT
22466855 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
22466869 A-TATAATTTAATA
1 ATTATAATTAAATA
22466882 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:22466979 original size:120 final size:119
Alignment explanation
Indices: 22466834--22467056 Score: 428
Period size: 120 Copynumber: 1.9 Consensus size: 119
22466824 ATCATATTTA
*
22466834 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
22466899 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATA-GATACTATAAAATATAAATT
22466954 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
22467019 TATTCTTATATGAATTTACTCAAATCATAATATAGATA
66 TATTCTTATATGAATTTACTCAAATCATAATATAGATA
22467057 ATTTAACATA
Statistics
Matches: 102, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
119 4 0.04
120 98 0.96
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (119 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATAGATACTATAAAATATAAATT
Found at i:22466999 original size:14 final size:15
Alignment explanation
Indices: 22466950--22467001 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
22466940 ATAAAATATA
22466950 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
22466965 TATTAAATATATTAT
1 AATTAAATATATTAT
22466980 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
22466993 AATTTAATA
1 AATTAAATA
22467002 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:22467447 original size:13 final size:13
Alignment explanation
Indices: 22467429--22467453 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22467419 GCCTTAACAA
22467429 GAGCAGCACTCAT
1 GAGCAGCACTCAT
22467442 GAGCAGCACTCA
1 GAGCAGCACTCA
22467454 AAACAGATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.32, G:0.24, T:0.12
Consensus pattern (13 bp):
GAGCAGCACTCAT
Found at i:22473948 original size:22 final size:23
Alignment explanation
Indices: 22473917--22473959 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
22473907 AATTTTGTTA
*
22473917 TATATATATACATGCGTACATTT
1 TATATATATACATACGTACATTT
*
22473940 TATA-ATATATATACGTACAT
1 TATATATATACATACGTACAT
22473960 ATTTCTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.42
Consensus pattern (23 bp):
TATATATATACATACGTACATTT
Found at i:22474162 original size:27 final size:27
Alignment explanation
Indices: 22474066--22474162 Score: 63
Period size: 33 Copynumber: 3.4 Consensus size: 27
22474056 TTAAAATATG
* * *
22474066 TATATTTTTATATATATTTTTATTTCTT
1 TATA-TTTTATATATATATATATTTTTT
* * *
22474094 T-TA-TTCACATACATATATATTTTTCT
1 TATATTTTATATATATATATATTTTT-T
22474120 TATATGTACATATATATATATATATATTTTTT
1 TATAT-T---T-TATATATATATATATTTTTT
22474152 TATATTTTATA
1 TATATTTTATA
22474163 ACTTTTATCT
Statistics
Matches: 52, Mismatches: 9, Indels: 17
0.67 0.12 0.22
Matches are distributed among these distances:
25 15 0.29
26 2 0.04
27 8 0.15
28 2 0.04
29 1 0.02
31 1 0.02
32 7 0.13
33 16 0.31
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (27 bp):
TATATTTTATATATATATATATTTTTT
Found at i:22476850 original size:46 final size:45
Alignment explanation
Indices: 22476725--22476885 Score: 169
Period size: 46 Copynumber: 3.5 Consensus size: 45
22476715 ACTATATGTT
* * *
22476725 GTGTAGGTTCAACCCTAACGGGTGACCAGACATTATTATCTAATTC
1 GTGTAGGTTCAACCCTAACAGGTGACCAG-CACTATTATCCAATTC
* * ** *
22476771 GTGTAGGTTCAATCCTAATAACTAACCAGGCACTATTATCCAATTC
1 GTGTAGGTTCAACCCTAACAGGTGACCA-GCACTATTATCCAATTC
* * * *
22476817 GTGTAGGTTCAACCCTAACCGGTGACTGAGCACTATTATTCGATTC
1 GTGTAGGTTCAACCCTAACAGGTGAC-CAGCACTATTATCCAATTC
* *
22476863 GTGTAGGTTTAACCCAAACAGGT
1 GTGTAGGTTCAACCCTAACAGGT
22476886 AACCTGGAAT
Statistics
Matches: 93, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
46 91 0.98
47 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (45 bp):
GTGTAGGTTCAACCCTAACAGGTGACCAGCACTATTATCCAATTC
Found at i:22479337 original size:31 final size:29
Alignment explanation
Indices: 22479277--22479338 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
22479267 ATTCATGCAC
*
22479277 CATATTAAATACTTTTAAAATATAAATAA
1 CATATTAAATACTTTTAAAATACAAATAA
* *
22479306 CATATTAAATATTTTATGAAAATACAGATAA
1 CATATTAAATACTTT-T-AAAATACAAATAA
22479337 CA
1 CA
22479339 AATATTAAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 14 0.50
30 1 0.04
31 13 0.46
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.35
Consensus pattern (29 bp):
CATATTAAATACTTTTAAAATACAAATAA
Found at i:22479982 original size:23 final size:25
Alignment explanation
Indices: 22479956--22480024 Score: 83
Period size: 24 Copynumber: 2.9 Consensus size: 25
22479946 TATGTGAACT
22479956 TTTAAAAATTATAAAAATTA-AT-A
1 TTTAAAAATTATAAAAATTATATAA
*
22479979 TTTAAAAAATCATAAAAA-TATATAA
1 TTT-AAAAATTATAAAAATTATATAA
*
22480004 TCTAAAAA-TATAAAAATTATA
1 TTTAAAAATTATAAAAATTATA
22480025 AATAATGGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
23 12 0.31
24 24 0.62
25 3 0.08
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (25 bp):
TTTAAAAATTATAAAAATTATATAA
Found at i:22480011 original size:15 final size:16
Alignment explanation
Indices: 22479986--22480015 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
22479976 ATATTTAAAA
22479986 AATCATAAAAATATAT
1 AATCATAAAAATATAT
22480002 AATC-TAAAAATATA
1 AATCATAAAAATATA
22480016 AAAATTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (16 bp):
AATCATAAAAATATAT
Found at i:22481460 original size:31 final size:29
Alignment explanation
Indices: 22481402--22481471 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
22481392 AAAAATAAAA
22481402 ATTTATCAAAATATTACAACTTTTTATTT
1 ATTTATCAAAATATTACAACTTTTTATTT
22481431 ATTTATCAAAATATATA-AAC-TTTT-TTT
1 ATTTATCAAAATAT-TACAACTTTTTATTT
*
22481458 ATTTACCAAAATAT
1 ATTTATCAAAATAT
22481472 ATCAAAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 16 0.41
28 4 0.10
29 17 0.44
30 2 0.05
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (29 bp):
ATTTATCAAAATATTACAACTTTTTATTT
Found at i:22481467 original size:27 final size:30
Alignment explanation
Indices: 22481402--22481473 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 30
22481392 AAAAATAAAA
22481402 ATTTATCAAAATAT-TACAACTTTTTATTT
1 ATTTATCAAAATATATACAACTTTTTATTT
22481431 ATTTATCAAAATATATA-AAC-TTTT-TTT
1 ATTTATCAAAATATATACAACTTTTTATTT
*
22481458 ATTTACCAAAATATAT
1 ATTTATCAAAATATAT
22481474 CAAAAAAAAC
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 18 0.44
28 4 0.10
29 17 0.41
30 2 0.05
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.49
Consensus pattern (30 bp):
ATTTATCAAAATATATACAACTTTTTATTT
Found at i:22481550 original size:27 final size:27
Alignment explanation
Indices: 22481512--22481597 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
22481502 CCTGACACCA
* * *
22481512 GCCAATTAAATTGGCGGTACCAAAGGT
1 GCCAAATAAATTGGCGGCACCAATGGT
* *
22481539 GCCAAATAAATTGGTGGCACCATTGGT
1 GCCAAATAAATTGGCGGCACCAATGGT
*
22481566 GCCAAAGT-CATTGGCGGCACC-ATGGT
1 GCCAAA-TAAATTGGCGGCACCAATGGT
22481592 GCCAAA
1 GCCAAA
22481598 GGAAAAAAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.78
28 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (27 bp):
GCCAAATAAATTGGCGGCACCAATGGT
Found at i:22481698 original size:19 final size:19
Alignment explanation
Indices: 22481671--22481740 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
22481661 TCAACTCATT
*
22481671 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
*
22481690 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACTCTA
* *
22481708 TTCTCATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
22481727 TTTTAATTTAATAA
1 TTTTAATTTAATAA
22481741 ACTATTAAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 15 0.35
19 28 0.65
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAATTTAATAACTCTA
Found at i:22481721 original size:37 final size:37
Alignment explanation
Indices: 22481676--22481746 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
22481666 TCATTTTTTT
22481676 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
22481713 ATTTAATAACTCTATTTTAATTTAATAAACTATT
1 ATTTAATAACTCTATTTTAATTTAATAAACTATT
22481747 AAGTAATACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.49
Consensus pattern (37 bp):
ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
Found at i:22482128 original size:27 final size:27
Alignment explanation
Indices: 22482052--22482129 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
22482042 CCTGACACCA
* * *
22482052 GCCAATTAAATTGGCGGTACCAAAGGT
1 GCCAAATAAATTGGCGGCACCATAGGT
* *
22482079 GCCAAATAAATTGGTGGCACCATTGGT
1 GCCAAATAAATTGGCGGCACCATAGGT
*
22482106 GCCAAAGT-CATTGGCGGCACCATA
1 GCCAAA-TAAATTGGCGGCACCATA
22482130 TTAAATTAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 41 0.98
28 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (27 bp):
GCCAAATAAATTGGCGGCACCATAGGT
Found at i:22483803 original size:26 final size:27
Alignment explanation
Indices: 22483753--22483813 Score: 106
Period size: 26 Copynumber: 2.3 Consensus size: 27
22483743 AAAAATAATT
22483753 AAAATATTATAACTTTTTTTTATTTACC
1 AAAATATTATAAC-TTTTTTTATTTACC
22483781 AAAATATTATAA-TTTTTTTATTTACC
1 AAAATATTATAACTTTTTTTATTTACC
22483807 AAAATAT
1 AAAATAT
22483814 ACCAAAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 21 0.64
28 12 0.36
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (27 bp):
AAAATATTATAACTTTTTTTATTTACC
Found at i:22484568 original size:26 final size:27
Alignment explanation
Indices: 22484532--22484582 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
22484522 CATTTTTTTC
*
22484532 CTTTGGCACC-ATGGTGCCGCCAATGA
1 CTTTGGCACCAATGGTGCCACCAATGA
22484558 CTTTGGCACCAATGGTGCCACCAAT
1 CTTTGGCACCAATGGTGCCACCAAT
22484583 TAGGTGCCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.22, C:0.31, G:0.24, T:0.24
Consensus pattern (27 bp):
CTTTGGCACCAATGGTGCCACCAATGA
Found at i:22484640 original size:19 final size:19
Alignment explanation
Indices: 22484616--22484654 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
22484606 TGGTGTTAGA
* *
22484616 TTTTTTTTTTGTTTTTTGG
1 TTTTTTTTTTATATTTTGG
22484635 TTTTTTTTTTATATTTTGG
1 TTTTTTTTTTATATTTTGG
22484654 T
1 T
22484655 AAATAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.05, C:0.00, G:0.13, T:0.82
Consensus pattern (19 bp):
TTTTTTTTTTATATTTTGG
Found at i:22484701 original size:29 final size:29
Alignment explanation
Indices: 22484645--22484744 Score: 184
Period size: 29 Copynumber: 3.5 Consensus size: 29
22484635 TTTTTTTTTT
22484645 ATATTTTGGTAAAT-AAAAAAAAGTTGTA
1 ATATTTTGGTAAATAAAAAAAAAGTTGTA
*
22484673 ATATTTTAGTAAATAAAAAAAAAGTTGTA
1 ATATTTTGGTAAATAAAAAAAAAGTTGTA
22484702 ATATTTTGGTAAATAAAAAAAAAGTTGTA
1 ATATTTTGGTAAATAAAAAAAAAGTTGTA
22484731 ATATTTTGGTAAAT
1 ATATTTTGGTAAAT
22484745 TTTTATTTTT
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
28 13 0.19
29 56 0.81
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (29 bp):
ATATTTTGGTAAATAAAAAAAAAGTTGTA
Found at i:22484762 original size:58 final size:57
Alignment explanation
Indices: 22484635--22484772 Score: 141
Period size: 58 Copynumber: 2.4 Consensus size: 57
22484625 TGTTTTTTGG
* *
22484635 TTTTTTTTTTATATTTTGGTAAATAAAAAAAAGTTGTAATATTTTAGTAAATAAAAA
1 TTTTTTTATAATATTTTGGTAAATAAAAAAAAGTTGTAATATTTTAGTAAATAAAAA
***** * * ****
22484692 AAAAGTTGTAATATTTTGGTAAATAAAAAAAAAGTTGTAATATTTTGGTAAATTTTTA
1 TTTTTTTATAATATTTTGGTAAAT-AAAAAAAAGTTGTAATATTTTAGTAAATAAAAA
*
22484750 TTTTTTTATAATATTTTTGTAAA
1 TTTTTTTATAATATTTTGGTAAA
22484773 AAACCCATAA
Statistics
Matches: 61, Mismatches: 19, Indels: 1
0.75 0.23 0.01
Matches are distributed among these distances:
57 17 0.28
58 44 0.72
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (57 bp):
TTTTTTTATAATATTTTGGTAAATAAAAAAAAGTTGTAATATTTTAGTAAATAAAAA
Found at i:22484871 original size:15 final size:17
Alignment explanation
Indices: 22484841--22484878 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
22484831 ATTAGGATAA
*
22484841 TATTTTAATTTTTTAG-
1 TATTTTAATCTTTTAGT
22484857 TATTTT-ATCTTTTAGT
1 TATTTTAATCTTTTAGT
22484873 TATTTT
1 TATTTT
22484879 CAAATAACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.21, C:0.03, G:0.05, T:0.71
Consensus pattern (17 bp):
TATTTTAATCTTTTAGT
Found at i:22485088 original size:15 final size:15
Alignment explanation
Indices: 22485064--22485097 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
22485054 CATTGCGCAA
22485064 TTTTTTTA-TTTATT
1 TTTTTTTATTTTATT
22485078 TTTTTTGTATTTTATT
1 TTTTTT-TATTTTATT
22485094 TTTT
1 TTTT
22485098 ATAGTTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 2 0.11
16 10 0.56
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.85
Consensus pattern (15 bp):
TTTTTTTATTTTATT
Done.