Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 79 of 187
Found at i:23092472 original size:8 final size:8
Alignment explanation
Indices: 23092459--23092487 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
23092449 GGGCTATAAA
23092459 TTTTTTAT
1 TTTTTTAT
23092467 TTTTTTAT
1 TTTTTTAT
23092475 TTTTTTAT
1 TTTTTTAT
23092483 TTTTT
1 TTTTT
23092488 GACTTTGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTTTAT
Found at i:23093007 original size:50 final size:50
Alignment explanation
Indices: 23092945--23093107 Score: 175
Period size: 50 Copynumber: 3.3 Consensus size: 50
23092935 GCAATGTCGA
* *
23092945 GGAAGCTAGATTCGCCGTTGTAGCTTCAATCTTTTCCACTGCACCACCTG
1 GGAAGTTAGATTCGCCGTTGTAGCTTCAATCTTTTCCACTGCACCGCCTG
* * ** * * *
23092995 GGAAGTTAGATTCGCTGTTGTAGCTTCAATATTTTTAACTGCAACGTCGG
1 GGAAGTTAGATTCGCCGTTGTAGCTTCAATCTTTTCCACTGCACCGCCTG
* * * * *
23093045 GGAAG-CAGGACTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTG
1 GGAAGTTA-GATTCGCCGTTGTAGCTTCAATCTTTTCCACTGCACCGCCTG
*
23093095 GGAAGTAAGATTC
1 GGAAGTTAGATTC
23093108 ATAATTTTCA
Statistics
Matches: 88, Mismatches: 23, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
49 1 0.01
50 86 0.98
51 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (50 bp):
GGAAGTTAGATTCGCCGTTGTAGCTTCAATCTTTTCCACTGCACCGCCTG
Found at i:23093063 original size:100 final size:101
Alignment explanation
Indices: 23092911--23093107 Score: 274
Period size: 100 Copynumber: 2.0 Consensus size: 101
23092901 TTGATTTCTT
* *
23092911 TTGTCAGCTCCAATTTATTTAACTGCAATGTCGAGGAAGCTAGATTCGCCGTTGTAGCTTCAATC
1 TTGTCAGCTCCAATTTATTTAACTGCAACGTCGAGGAAGCTAGACTCGCCGTTGTAGCTTCAATC
* *
23092976 TTTTCCACTGCACCACCTGGGAAGTTAGATTCGCTG
66 TGTTCCACTGCACCACCTGGGAAGTAAGATTCGCTG
* * * *
23093012 TTGT-AGCTTCAATATT-TTTAACTGCAACGTCGGGGAAGC-AGGACTCGCCGTTGTGGCTTTAA
1 TTGTCAGCTCCAAT-TTATTTAACTGCAACGTCGAGGAAGCTA-GACTCGCCGTTGTAGCTTCAA
*
23093074 TCTGTTCCACTGCACCGCCTGGGAAGTAAGATTC
64 TCTGTTCCACTGCACCACCTGGGAAGTAAGATTC
23093108 ATAATTTTCA
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
99 1 0.01
100 78 0.92
101 6 0.07
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.31
Consensus pattern (101 bp):
TTGTCAGCTCCAATTTATTTAACTGCAACGTCGAGGAAGCTAGACTCGCCGTTGTAGCTTCAATC
TGTTCCACTGCACCACCTGGGAAGTAAGATTCGCTG
Found at i:23093149 original size:44 final size:43
Alignment explanation
Indices: 23093100--23093201 Score: 111
Period size: 44 Copynumber: 2.3 Consensus size: 43
23093090 GCCTGGGAAG
23093100 TAAGATTCATAATTTTCA-ACCTGCTCCACTACTGCTTAGGGAGA
1 TAAGATTCATAATTTTCATA--TGCTCCACTACTGCTTAGGGAGA
* *
23093144 TAAGATCTGCCAT--CTTTGATATGCTCCACTACTGCTTAGGGAGA
1 TAAGAT-T--CATAATTTTCATATGCTCCACTACTGCTTAGGGAGA
*
23093188 TAAGATTTATAATT
1 TAAGATTCATAATT
23093202 CTTCGGTTTG
Statistics
Matches: 48, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
41 2 0.04
43 2 0.04
44 35 0.73
45 5 0.10
46 1 0.02
47 3 0.06
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (43 bp):
TAAGATTCATAATTTTCATATGCTCCACTACTGCTTAGGGAGA
Found at i:23093572 original size:131 final size:131
Alignment explanation
Indices: 23093120--23093756 Score: 804
Period size: 131 Copynumber: 4.9 Consensus size: 131
23093110 AATTTTCAAC
* * * *
23093120 CTGC-TCCACTACTGCTTAGGG-AGATAAGA-TCTGCCATCTTTGATATGCTCCACTACTGCTTA
1 CTGCTTCC-CTACT-CTTGGGGAAGATAAGATTC-GCCGTCTTCGATCTGCTCCACTACTGCTTA
* * **** * * **
23093182 GGGAGATAAGATTTATAATTCTTCGGTTTGTTCCGCTGCAACTTCAGGGAGATAAGGTCAGTGGC
63 GGGAGATAAGATCTGTAATT-TTCAACCTATTCCACTGC-TGTTCAGGGAGATAAGGTCAGTGGC
*
23093247 TTGAAT
126 TTAAAT
*
23093253 CTGCTTCCCTACTCTTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGG
1 CTGCTTCCCTACTCTTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* *
23093318 AGATAAGATCTGTAATTTTCAACCTACTCCACTGC---TCAGGGAGATAAGGTTAGTGGCTTAAA
66 AGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGTTCAGGGAGATAAGGTCAGTGGCTTAAA
23093380 T
131 T
* * * *
23093381 CTGTTTCCCTACTCCT-GGGAATATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 CTGCTTCCCTACTCTTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* * *
23093445 AGATAAGATCTGTAATTTTTAACCTACTCCACTGCTGTTCAGGGAGACAAGGTCAGTGGCTTAAA
66 AGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGTTCAGGGAGATAAGGTCAGTGGCTTAAA
23093510 T
131 T
*
23093511 CTGCTTCCCTACTCTTGGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 CTGCTTCCCTACTCTTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* * * * * * *
23093576 AGATAAAATTTGCAATTTTTAACCTATTCCACTGCTGTCCAGGGGGAT-AGGACTAGTGGCTTAA
66 AGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGTTCAGGGAGATAAGGTC-AGTGGCTTAA
23093640 AT
130 AT
* * *
23093642 CTGCTTCCCTACTACCTGGGGAAGATGAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGG
1 CTGCTTCCCTACT-CTTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
* **
23093707 GAGATAAGATCTGTAATATTCAACCTATTCCACTGCTGACCAGGGAGATA
65 GAGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGTTCAGGGAGATA
23093757 GGATTCACAA
Statistics
Matches: 446, Mismatches: 48, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
127 79 0.18
128 40 0.09
130 44 0.10
131 111 0.25
132 106 0.24
133 61 0.14
134 5 0.01
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (131 bp):
CTGCTTCCCTACTCTTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
AGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGTTCAGGGAGATAAGGTCAGTGGCTTAAA
T
Found at i:23093580 original size:44 final size:45
Alignment explanation
Indices: 23093120--23093581 Score: 150
Period size: 44 Copynumber: 10.6 Consensus size: 45
23093110 AATTTTCAAC
*
23093120 CTGCTCCACTACTGCTTAGGGAGATAAGA-TCTGCCATCTTTGAT
1 CTGCTCCACTACTGCTTAGGGAGATAAGATTCTGCCGTCTTTGAT
* **** * *
23093164 ATGCTCCACTACTGCTTAGGGAGATAAGATT-TATAATTCTTCGGT
1 CTGCTCCACTACTGCTTAGGGAGATAAGATTCT-GCCGTCTTTGAT
* * * * ** * * * *
23093209 TTGTTCCGCTGCAACTTCAGGGAGATAAG-GTCAG-TGGC-TTGAAT
1 CTGCTCCACTACTGCTT-AGGGAGATAAGATTCTGCCGTCTTTG-AT
* *
23093253 CTGCTTCC-CTACT-CTTGGGGAAGATAAGATTC-GCCGTCTTCGAT
1 CTGC-TCCACTACTGCTTAGGG-AGATAAGATTCTGCCGTCTTTGAT
* *** * *
23093297 CTGCTCCACTACTACTTAGGGAGATAAGA-TCTGTAAT-TTTCAAC
1 CTGCTCCACTACTGCTTAGGGAGATAAGATTCTGCCGTCTTT-GAT
* * * * **
23093341 CTACT-C-C-ACTGCTCAGGGAGATAAGGTTAGTG--G-CTTAAAT
1 CTGCTCCACTACTGCTTAGGGAGATAAGATT-CTGCCGTCTTTGAT
* * * * *
23093381 CTGTTTCC-CTACT-CCT-GGGAATATAAGATTC-ACCGTCTTCGAT
1 CTG-CTCCACTACTGCTTAGGG-AGATAAGATTCTGCCGTCTTTGAT
*** * * *
23093424 CTGCTCCACTACTGCTTAGGGAGATAAGA-TCTGTAATTTTTAAC
1 CTGCTCCACTACTGCTTAGGGAGATAAGATTCTGCCGTCTTTGAT
* * * * * * * **
23093468 CTACTCCACTGCTG-TTCAGGGAGACAAG-GTCAG-TGGCTTAAAT
1 CTGCTCCACTACTGCTT-AGGGAGATAAGATTCTGCCGTCTTTGAT
*
23093511 CTGCTTCC-CTACT-CTTGGGGAAGATAAGATTC-GCCGTCTTTGAT
1 CTGC-TCCACTACTGCTTAGGG-AGATAAGATTCTGCCGTCTTTGAT
23093555 CTGCTCCACTACTGCTTAGGGAGATAA
1 CTGCTCCACTACTGCTTAGGGAGATAA
23093582 AATTTGCAAT
Statistics
Matches: 295, Mismatches: 86, Indels: 74
0.65 0.19 0.16
Matches are distributed among these distances:
40 4 0.01
41 22 0.07
42 23 0.08
43 66 0.22
44 130 0.44
45 39 0.13
46 11 0.04
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (45 bp):
CTGCTCCACTACTGCTTAGGGAGATAAGATTCTGCCGTCTTTGAT
Found at i:23093609 original size:258 final size:262
Alignment explanation
Indices: 23093224--23093754 Score: 820
Period size: 258 Copynumber: 2.0 Consensus size: 262
23093214 CCGCTGCAAC
* *
23093224 TTCAGGGAGATAAGGTCAGTGGCTTGAATCTGCTTCCCTACTCTTGGGGAAGATAAGATTCGCCG
1 TTCAGGGAGACAAGGTCAGTGGCTTAAATCTGCTTCCCTACTCTTGGGGAAGATAAGATTCGCCG
* *
23093289 TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGC-
66 TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAAATCTGCAATTTTCAACCTACTCCACTGCG
* * *
23093353 T-CAGGGAGATAAGG-TTAGTGGCTTAAATCTGTTTCCCTACT-CCT-GGGAATATAAGATTCAC
131 TCCAGGGAGAT-AGGACTAGTGGCTTAAATCTGCTTCCCTACTACCTGGGGAAGATAAGATTCAC
* * *
23093414 CGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTTAACCTACTCCACTG
195 CGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAACCTACTCCACTG
23093479 CTG
260 CTG
23093482 TTCAGGGAGACAAGGTCAGTGGCTTAAATCTGCTTCCCTACTCTTGGGGAAGATAAGATTCGCCG
1 TTCAGGGAGACAAGGTCAGTGGCTTAAATCTGCTTCCCTACTCTTGGGGAAGATAAGATTCGCCG
* * * * *
23093547 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAAATTTGCAATTTTTAACCTATTCCACTGCT
66 TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAAATCTGCAATTTTCAACCTACTCCACTGC-
* * *
23093612 GTCCAGGGGGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTACCTGGGGAAGATGAGATTCGC
130 GTCCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTACCTGGGGAAGATAAGATTCAC
*
23093677 CGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAACCTATTCCACTG
195 CGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAACCTACTCCACTG
23093742 CTG
260 CTG
**
23093745 ACCAGGGAGA
1 TTCAGGGAGA
23093755 TAGGATTCAC
Statistics
Matches: 246, Mismatches: 21, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
258 120 0.49
260 4 0.02
261 33 0.13
262 3 0.01
263 86 0.35
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (262 bp):
TTCAGGGAGACAAGGTCAGTGGCTTAAATCTGCTTCCCTACTCTTGGGGAAGATAAGATTCGCCG
TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAAATCTGCAATTTTCAACCTACTCCACTGCG
TCCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTACCTGGGGAAGATAAGATTCACC
GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAACCTACTCCACTGC
TG
Found at i:23094022 original size:44 final size:44
Alignment explanation
Indices: 23093725--23094023 Score: 431
Period size: 44 Copynumber: 6.8 Consensus size: 44
23093715 ATCTGTAATA
23093725 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
23093769 TTCAACCTATTCCTACTGCTGACCAGGGAGATATGATTCACAATC
1 TTCAACCTATTCC-ACTGCTGACCAGGGAGATAGGATTCACAATC
*
23093814 TTCAACCTATTCCTACTG-TGACCAGAGAGATAGGATTCACAATC
1 TTCAACCTATTCC-ACTGCTGACCAGGGAGATAGGATTCACAATC
* * *
23093858 TTCAATCTATTCCACTACT-ACCCAGGGAGATAGAATTCACAATC
1 TTCAACCTATTCCACTGCTGA-CCAGGGAGATAGGATTCACAATC
* * * * * *
23093902 CTCAATCTATTCCACTGCTGCCCAAGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* *
23093946 TTCAACCTATTCCTCTGCTGACCAGGGAGATAGGATTCACAACC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
23093990 TTCAACCTATTCCACTGCTGTCCAGGGAGATAGG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGG
23094024 GCTGGGGTCA
Statistics
Matches: 229, Mismatches: 22, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
43 4 0.02
44 177 0.77
45 48 0.21
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
Found at i:23094187 original size:88 final size:88
Alignment explanation
Indices: 23094064--23094557 Score: 614
Period size: 88 Copynumber: 5.6 Consensus size: 88
23094054 TTAGGGAAAT
* * * * *
23094064 AAGATCTG-TAATTTTTAACCTGCTCCGCTGTAACCCAGGGAAGCAAGGCTGGGGTCTTCGATCT
1 AAGATCTGCT-ATCTTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCAATCT
* * *
23094128 GTTTCACTGTCAATACAGGAAGGC
65 GCTTCGCTGTCAATGCAGGAAGGC
* * * * **
23094152 AAGATCTGATATCTTTAACCTGCTCCGTTGTAACCCAGGGAGGCAAGGTTGGTGTCTTTGATCTG
1 AAGATCTGCTATCTTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCAATCTG
* *
23094217 CTTCGCTGTCGATGCAAGAAGGC
66 CTTCGCTGTCAATGCAGGAAGGC
** * * * * *
23094240 AAGATCCACTATCTTCAACCTGCCCCGCTGCAACCCAGGGAGGCAAAGCTAGTGTCTTCAATCTA
1 AAGATCTGCTATCTTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCAATCTG
* *
23094305 CTTCACTGTCAATACAGGAAGGC
66 CTTCGCTGTCAATGCAGGAAGGC
*
23094328 AAGATCTGCTATCTTTAACCTGCTCCGCTGTAACCCAGGGAGGCAAGGCTGGTGTCTTCAATCTG
1 AAGATCTGCTATCTTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCAATCTG
* *
23094393 CTTCGCTGTCAGTGCAGGAAGGT
66 CTTCGCTGTCAATGCAGGAAGGC
* * * *
23094416 AAGATCTGCTATATTCAACCTGCTCCGCTGCAACCTAGGGAGGCAAGGCTGGTGTCTTCAATTTG
1 AAGATCTGCTATCTTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCAATCTG
**
23094481 CTTCGCTGTCGGTGCAGGAAGGC
66 CTTCGCTGTCAATGCAGGAAGGC
* * * *
23094504 AAGATTTGCTAT-TTTCAACCTCCTCCGCTGCAACCCGGGGAGGCAAGGATGGTG
1 AAGATCTGCTATCTTT-AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTG
23094558 AATACACTTA
Statistics
Matches: 351, Mismatches: 53, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
87 2 0.01
88 348 0.99
89 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (88 bp):
AAGATCTGCTATCTTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCAATCTG
CTTCGCTGTCAATGCAGGAAGGC
Found at i:23094218 original size:43 final size:43
Alignment explanation
Indices: 23094083--23094401 Score: 116
Period size: 44 Copynumber: 7.3 Consensus size: 43
23094073 AATTTTTAAC
* * * *
23094083 CTGCTCCGCTGTAACCCAGGGAAGCAAGGCTGGGGTCTTCGAT
1 CTGCTCCGCTGTAACCCAGGGAGGCAAGGTTGGTGTCTTTGAT
* * * ** * * * * * *
23094126 CTGTTTCACTGTCAATACAGGAAGGCAAGATCTGATATCTTTAAC
1 CTGCTCCGCTGT-AACCCAGGGAGGCAAGGT-TGGTGTCTTTGAT
*
23094171 CTGCTCCGTTGTAACCCAGGGAGGCAAGGTTGGTGTCTTTGAT
1 CTGCTCCGCTGTAACCCAGGGAGGCAAGGTTGGTGTCTTTGAT
* * ** * * * *** * ** *
23094214 CTGCTTCGCTGTCGATGCAAGAAGGCAAGATCCACTATCTTCAAC
1 CTGCTCCGCTGT-AACCCAGGGAGGCAAGGT-TGGTGTCTTTGAT
* * * * * **
23094259 CTGCCCCGCTGCAACCCAGGGAGGCAAAGCTAGTGTCTTCAAT
1 CTGCTCCGCTGTAACCCAGGGAGGCAAGGTTGGTGTCTTTGAT
* * * ** * * * * * *
23094302 CTACTTCACTGTCAATACAGGAAGGCAAGATCTGCTATCTTTAAC
1 CTGCTCCGCTGT-AACCCAGGGAGGCAAGGT-TGGTGTCTTTGAT
* **
23094347 CTGCTCCGCTGTAACCCAGGGAGGCAAGGCTGGTGTCTTCAAT
1 CTGCTCCGCTGTAACCCAGGGAGGCAAGGTTGGTGTCTTTGAT
*
23094390 CTGCTTCGCTGT
1 CTGCTCCGCTGT
23094402 CAGTGCAGGA
Statistics
Matches: 184, Mismatches: 86, Indels: 12
0.65 0.30 0.04
Matches are distributed among these distances:
43 64 0.35
44 73 0.40
45 47 0.26
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (43 bp):
CTGCTCCGCTGTAACCCAGGGAGGCAAGGTTGGTGTCTTTGAT
Found at i:23094284 original size:44 final size:44
Alignment explanation
Indices: 23094143--23094550 Score: 169
Period size: 44 Copynumber: 9.3 Consensus size: 44
23094133 ACTGTCAATA
* * * *
23094143 CAGGAAGGCAAGATCTGA-TATCTTTAACCTGCTCCGTTGTAACC
1 CAGGGAGGCAAGATCT-ACTATCTTCAACCTGCTCCGCTGCAACC
* ** * ** * * * **
23094187 CAGGGAGGCAAGGT-TGGTGTCTTTGATCTGCTTCGCTGTCGATG
1 CAGGGAGGCAAGATCTACTATCTTCAACCTGCTCCGCTG-CAACC
* * * *
23094231 CAAGAAGGCAAGATCCACTATCTTCAACCTGCCCCGCTGCAACC
1 CAGGGAGGCAAGATCTACTATCTTCAACCTGCTCCGCTGCAACC
* * * * * * * **
23094275 CAGGGAGGCAA-AGCTAGTGTCTTCAATCTACTTCACTGTCAATA
1 CAGGGAGGCAAGATCTACTATCTTCAACCTGCTCCGCTG-CAACC
* * * *
23094319 CAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGCTGTAACC
1 CAGGGAGGCAAGATCTACTATCTTCAACCTGCTCCGCTGCAACC
* ** * * * ***
23094363 CAGGGAGGCAAG-GCTGGTGTCTTCAATCTGCTTCGCTGTCAGTG
1 CAGGGAGGCAAGATCTACTATCTTCAACCTGCTCCGCTG-CAACC
* * * *
23094407 CAGGAAGGTAAGATCTGCTATATTCAACCTGCTCCGCTGCAACC
1 CAGGGAGGCAAGATCTACTATCTTCAACCTGCTCCGCTGCAACC
* * ** * ** * ****
23094451 TAGGGAGGCAAG-GCTGGTGTCTTCAATTTGCTTCGCTGTCGGTG
1 CAGGGAGGCAAGATCTACTATCTTCAACCTGCTCCGCTG-CAACC
* * * * *
23094495 CAGGAAGGCAAGATTTGCTATTTTCAACCTCCTCCGCTGCAACC
1 CAGGGAGGCAAGATCTACTATCTTCAACCTGCTCCGCTGCAACC
*
23094539 CGGGGAGGCAAG
1 CAGGGAGGCAAG
23094551 GATGGTGAAT
Statistics
Matches: 249, Mismatches: 106, Indels: 18
0.67 0.28 0.05
Matches are distributed among these distances:
43 74 0.30
44 105 0.42
45 70 0.28
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (44 bp):
CAGGGAGGCAAGATCTACTATCTTCAACCTGCTCCGCTGCAACC
Found at i:23094458 original size:264 final size:264
Alignment explanation
Indices: 23094064--23094549 Score: 706
Period size: 264 Copynumber: 1.8 Consensus size: 264
23094054 TTAGGGAAAT
* *
23094064 AAGATCTGTAATTTTTAACCTGCTCCGCTGTAACCCAGGGAAGCAAGGCTGGGGTCTTCGATCTG
1 AAGATCTGTAATCTTTAACCTGCTCCGCTGTAACCCAGGGAAGCAAGGCTGGGGTCTTCAATCTG
* * * * *
23094129 TTTCACTGTCAATACAGGAAGGCAAGATCTGATATCTTTAACCTGCTCCGTTGTAACCCAGGGAG
66 CTTCACTGTCAATACAGGAAGGCAAGATCTGATATATTCAACCTGCTCCGCTGCAACCCAGGGAG
* **
23094194 GCAAGGTTGGTGTCTTTGATCTGCTTCGCTGTCGATGCAAGAAGGCAAGATCCACTATCTTCAAC
131 GCAAGGCTGGTGTCTTCAATCTGCTTCGCTGTCGATGCAAGAAGGCAAGATCCACTATCTTCAAC
23094259 CTGCC-CCGCTGCAACCCAGGGAGGCAAAGCTAGTGTCTTCAATCTACTTCACTGTCAATACAGG
196 CT-CCTCCGCTGCAACCCAGGGAGGCAAAGCTAGTGTCTTCAATCTACTTCACTGTCAATACAGG
23094323 AAGGC
260 AAGGC
* *
23094328 AAGATCTGCT-ATCTTTAACCTGCTCCGCTGTAACCCAGGGAGGCAAGGCTGGTGTCTTCAATCT
1 AAGATCTG-TAATCTTTAACCTGCTCCGCTGTAACCCAGGGAAGCAAGGCTGGGGTCTTCAATCT
* * * * * *
23094392 GCTTCGCTGTCAGTGCAGGAAGGTAAGATCTGCTATATTCAACCTGCTCCGCTGCAACCTAGGGA
65 GCTTCACTGTCAATACAGGAAGGCAAGATCTGATATATTCAACCTGCTCCGCTGCAACCCAGGGA
* * * *** *
23094457 GGCAAGGCTGGTGTCTTCAATTTGCTTCGCTGTCGGTGCAGGAAGGCAAGATTTGCTATTTTCAA
130 GGCAAGGCTGGTGTCTTCAATCTGCTTCGCTGTCGATGCAAGAAGGCAAGATCCACTATCTTCAA
*
23094522 CCTCCTCCGCTGCAACCCGGGGAGGCAA
195 CCTCCTCCGCTGCAACCCAGGGAGGCAA
23094550 GGATGGTGAA
Statistics
Matches: 194, Mismatches: 26, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
263 2 0.01
264 191 0.98
265 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (264 bp):
AAGATCTGTAATCTTTAACCTGCTCCGCTGTAACCCAGGGAAGCAAGGCTGGGGTCTTCAATCTG
CTTCACTGTCAATACAGGAAGGCAAGATCTGATATATTCAACCTGCTCCGCTGCAACCCAGGGAG
GCAAGGCTGGTGTCTTCAATCTGCTTCGCTGTCGATGCAAGAAGGCAAGATCCACTATCTTCAAC
CTCCTCCGCTGCAACCCAGGGAGGCAAAGCTAGTGTCTTCAATCTACTTCACTGTCAATACAGGA
AGGC
Found at i:23097549 original size:6 final size:6
Alignment explanation
Indices: 23097540--23097578 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
23097530 AACATAAACA
23097540 TGTGCT TGTGCT TGTGCT TGTGCT TGTGCT TGTGCT TGT
1 TGTGCT TGTGCT TGTGCT TGTGCT TGTGCT TGTGCT TGT
23097579 TCTTATTCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.15, G:0.33, T:0.51
Consensus pattern (6 bp):
TGTGCT
Found at i:23109185 original size:25 final size:25
Alignment explanation
Indices: 23109157--23109204 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23109147 AATGAAATAC
*
23109157 CGTAAACGAGACGATACGAGAAAAT
1 CGTAAACGAGACGAGACGAGAAAAT
* *
23109182 CGTAAACGATACGAGATGAGAAA
1 CGTAAACGAGACGAGACGAGAAA
23109205 CGAGATCTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.48, C:0.15, G:0.25, T:0.12
Consensus pattern (25 bp):
CGTAAACGAGACGAGACGAGAAAAT
Found at i:23112500 original size:18 final size:17
Alignment explanation
Indices: 23112473--23112521 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
23112463 AAATTCTATA
*
23112473 AAAATTATTAAAAATAAT
1 AAAATGATTAAAAAT-AT
23112491 AAAATGATTAAAAATAT
1 AAAATGATTAAAAATAT
*
23112508 AAAAAGTATTAAAA
1 AAAATG-ATTAAAA
23112522 GTATTAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.25
18 21 0.75
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (17 bp):
AAAATGATTAAAAATAT
Found at i:23112521 original size:9 final size:9
Alignment explanation
Indices: 23112456--23112529 Score: 62
Period size: 10 Copynumber: 8.0 Consensus size: 9
23112446 ATAAAAAATT
23112456 AATATTAAA
1 AATATTAAA
* *
23112465 ATTCTATAAA
1 AATAT-TAAA
23112475 AATTATTAAA
1 AA-TATTAAA
*
23112485 AATAAT-AA
1 AATATTAAA
23112493 AATGATTAAA
1 AAT-ATTAAA
23112503 AATA-TAAA
1 AATATTAAA
23112511 AAGTATTAAA
1 AA-TATTAAA
*
23112521 AGTATTAAA
1 AATATTAAA
23112530 TTAATATACT
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
8 11 0.21
9 18 0.35
10 21 0.40
11 2 0.04
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (9 bp):
AATATTAAA
Found at i:23113498 original size:21 final size:22
Alignment explanation
Indices: 23113472--23113514 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
23113462 CCTAATATGT
*
23113472 GAATTGGATTGAATTGA-TTAA
1 GAATTGGATTAAATTGAGTTAA
*
23113493 GAATTGTATTAAATTGAGTTAA
1 GAATTGGATTAAATTGAGTTAA
23113515 ATTTACTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.40
Consensus pattern (22 bp):
GAATTGGATTAAATTGAGTTAA
Found at i:23114209 original size:25 final size:25
Alignment explanation
Indices: 23114113--23114225 Score: 113
Period size: 25 Copynumber: 4.6 Consensus size: 25
23114103 TTTGAAGTTA
23114113 CCCGTTAT-TGGCTCATATGAGCTT
1 CCCGTTATATGGCTCATATGAGCTT
* * * *
23114137 CCTG-CATATGACTCTTATGAGCTT
1 CCCGTTATATGGCTCATATGAGCTT
* * ** *
23114161 CCCGTTATATAGCCCGGATAAGCTT
1 CCCGTTATATGGCTCATATGAGCTT
*
23114186 CCCGTTATATGGCTCACATGAGCTT
1 CCCGTTATATGGCTCATATGAGCTT
*
23114211 CCTGTTATATGGCTC
1 CCCGTTATATGGCTC
23114226 GAGAGAGGGC
Statistics
Matches: 69, Mismatches: 18, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
23 2 0.03
24 20 0.29
25 47 0.68
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (25 bp):
CCCGTTATATGGCTCATATGAGCTT
Found at i:23114562 original size:23 final size:23
Alignment explanation
Indices: 23114535--23114582 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
23114525 TTTTGGCCAT
23114535 TTGCTTGAGTATGCTTTATATAC
1 TTGCTTGAGTATGCTTTATATAC
23114558 TTGCTTGAGTATGCTTTATATAC
1 TTGCTTGAGTATGCTTTATATAC
23114581 TT
1 TT
23114583 ACCTTAATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.12, G:0.17, T:0.50
Consensus pattern (23 bp):
TTGCTTGAGTATGCTTTATATAC
Found at i:23116570 original size:52 final size:52
Alignment explanation
Indices: 23116492--23116672 Score: 285
Period size: 52 Copynumber: 3.5 Consensus size: 52
23116482 ACTAGTGACT
*
23116492 CAAGTGTAGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
*
23116544 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAAAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
* *
23116596 CAAATGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGGTAGCTTTGG-CTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTC-A
* *
23116647 CAAGAGTGGTACTATGTGTAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
23116673 CGGGTATCCG
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
50 1 0.01
51 36 0.30
52 83 0.69
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.28
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
Found at i:23118872 original size:18 final size:19
Alignment explanation
Indices: 23118851--23118892 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
23118841 AATTTTAATA
23118851 TTTTTT-AATATTTAT-AT
1 TTTTTTGAATATTTATGAT
* *
23118868 TTTTTTGACTTTTTATGAT
1 TTTTTTGAATATTTATGAT
23118887 TTTTTT
1 TTTTTT
23118893 ATCATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 7 0.33
19 8 0.38
ACGTcount: A:0.19, C:0.02, G:0.05, T:0.74
Consensus pattern (19 bp):
TTTTTTGAATATTTATGAT
Found at i:23122407 original size:33 final size:34
Alignment explanation
Indices: 23122370--23122433 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
23122360 TTTCGTGTAA
23122370 AAAAT-TATAATTATTTAAAATATT-TAAAATAAT
1 AAAATGTAT-ATTATTTAAAATATTATAAAATAAT
*
23122403 AAAATGTATATTATTTATAATATTATAAAAT
1 AAAATGTATATTATTTAAAATATTATAAAAT
23122434 TTTGACTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 19 0.68
34 9 0.32
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (34 bp):
AAAATGTATATTATTTAAAATATTATAAAATAAT
Found at i:23134104 original size:30 final size:28
Alignment explanation
Indices: 23134063--23134129 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 28
23134053 ACCATGCAGC
*
23134063 AGTGGCAGACAAGCCAAAAGTG-AGAGCTAA
1 AGTGGCGGACAAGCC--AAGTGCA-AGCTAA
*
23134093 AGTGGCGGACAATCCAAGTGCAAGCTAA
1 AGTGGCGGACAAGCCAAGTGCAAGCTAA
23134121 AGTGGCGGA
1 AGTGGCGGA
23134130 TAGTACAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 20 0.59
29 1 0.03
30 13 0.38
ACGTcount: A:0.37, C:0.18, G:0.33, T:0.12
Consensus pattern (28 bp):
AGTGGCGGACAAGCCAAGTGCAAGCTAA
Found at i:23134120 original size:28 final size:29
Alignment explanation
Indices: 23134079--23134154 Score: 93
Period size: 28 Copynumber: 2.7 Consensus size: 29
23134069 AGACAAGCCA
23134079 AAAGTG-AGAGCTAAAGTGGCGGACAAT-C
1 AAAGTGCA-AGCTAAAGTGGCGGACAATAC
* * *
23134107 CAAGTGCAAGCTAAAGTGGCGGATAGTAC
1 AAAGTGCAAGCTAAAGTGGCGGACAATAC
*
23134136 AAAGTGCAAGCCAAAGTGG
1 AAAGTGCAAGCTAAAGTGG
23134155 GAGACAGTCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 22 0.54
29 19 0.46
ACGTcount: A:0.38, C:0.16, G:0.32, T:0.14
Consensus pattern (29 bp):
AAAGTGCAAGCTAAAGTGGCGGACAATAC
Found at i:23134151 original size:29 final size:28
Alignment explanation
Indices: 23134091--23134154 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 28
23134081 AGTGAGAGCT
* *
23134091 AAAGTGGCGGACAATCCAAGTGCAAGCT
1 AAAGTGGCGGACAATCAAAGTGCAAGCC
* *
23134119 AAAGTGGCGGATAGTACAAAGTGCAAGCC
1 AAAGTGGCGGACAAT-CAAAGTGCAAGCC
23134148 AAAGTGG
1 AAAGTGG
23134155 GAGACAGTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 13 0.42
29 18 0.58
ACGTcount: A:0.38, C:0.17, G:0.31, T:0.14
Consensus pattern (28 bp):
AAAGTGGCGGACAATCAAAGTGCAAGCC
Found at i:23137565 original size:44 final size:45
Alignment explanation
Indices: 23137501--23137586 Score: 131
Period size: 44 Copynumber: 1.9 Consensus size: 45
23137491 ATATCGTTAT
*
23137501 AGAACATGACCTTTAGCGGCGCTTT-TCCTACAAACGCCGCTACTA
1 AGAACATGACCTTTAGCGGCGCTTTCTCC-ACAAACACCGCTACTA
*
23137546 AGAACAT-ACTTTTAGCGGCGCTTTCTCCACAAACACCGCTA
1 AGAACATGACCTTTAGCGGCGCTTTCTCCACAAACACCGCTA
23137587 AACATGTTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
44 28 0.74
45 10 0.26
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.24
Consensus pattern (45 bp):
AGAACATGACCTTTAGCGGCGCTTTCTCCACAAACACCGCTACTA
Found at i:23137723 original size:28 final size:28
Alignment explanation
Indices: 23137683--23137741 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
23137673 CGTTCTTTCA
23137683 TGTTTCACATTTGATGTTCCTCATAATT
1 TGTTTCACATTTGATGTTCCTCATAATT
23137711 TGTTTCACATTTGATGTTCCTCATAATT
1 TGTTTCACATTTGATGTTCCTCATAATT
23137739 TGT
1 TGT
23137742 AGTTCCAGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (28 bp):
TGTTTCACATTTGATGTTCCTCATAATT
Found at i:23141102 original size:40 final size:40
Alignment explanation
Indices: 23141047--23141124 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
23141037 AATGAATAAC
* *
23141047 AGGACTACCACAAAATAGGATTGAGAATAAACCACAAAAT
1 AGGACTACCACAAAATAGGATTAACAATAAACCACAAAAT
23141087 AGGACTACCACAAAATAGGATTAACAATAAACCACAAA
1 AGGACTACCACAAAATAGGATTAACAATAAACCACAAA
23141125 TTAGAAGTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.54, C:0.19, G:0.13, T:0.14
Consensus pattern (40 bp):
AGGACTACCACAAAATAGGATTAACAATAAACCACAAAAT
Found at i:23141338 original size:127 final size:127
Alignment explanation
Indices: 23141112--23141371 Score: 484
Period size: 127 Copynumber: 2.0 Consensus size: 127
23141102 TAGGATTAAC
*
23141112 AATAAACCACAAATTAGAAGTAAAACGGACCCGTTTTACCAAATACAATCTTTAAGATTGTAGTT
1 AATAAACCACAAATTAGAAGTAAAACGGACCCGTTTTACCAAAAACAATCTTTAAGATTGTAGTT
*
23141177 CGGATTCTTAAAAATACACTTAAAAGTGATAAAACTGTAAAAACTTATAAATTTCTCAAGAG
66 CAGATTCTTAAAAATACACTTAAAAGTGATAAAACTGTAAAAACTTATAAATTTCTCAAGAG
* *
23141239 AATAAACCACAAATTAGAAGTAAAACGGATCCGTTTTACCAAAAACAATCTTTAATATTGTAGTT
1 AATAAACCACAAATTAGAAGTAAAACGGACCCGTTTTACCAAAAACAATCTTTAAGATTGTAGTT
23141304 CAGATTCTTAAAAATACACTTAAAAGTGATAAAACTGTAAAAACTTATAAATTTCTCAAGAG
66 CAGATTCTTAAAAATACACTTAAAAGTGATAAAACTGTAAAAACTTATAAATTTCTCAAGAG
23141366 AATAAA
1 AATAAA
23141372 TTATTCTTTG
Statistics
Matches: 129, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
127 129 1.00
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.28
Consensus pattern (127 bp):
AATAAACCACAAATTAGAAGTAAAACGGACCCGTTTTACCAAAAACAATCTTTAAGATTGTAGTT
CAGATTCTTAAAAATACACTTAAAAGTGATAAAACTGTAAAAACTTATAAATTTCTCAAGAG
Found at i:23142274 original size:41 final size:41
Alignment explanation
Indices: 23142140--23142354 Score: 213
Period size: 41 Copynumber: 5.3 Consensus size: 41
23142130 CAAAAAAATA
* * *
23142140 TTTGCGGCATTTATG-GAAAAAACACTGCTATTGCTTTACAT
1 TTTGCGGCGTTTATGAG-AAAAACGCTGCTATTGCTTTACCT
* * * * * *
23142181 TTAGTGGTGTTTATGA-AAAATCGCCGTTATTAG-TTTACCT
1 TTTGCGGCGTTTATGAGAAAAACGCTGCTATT-GCTTTACCT
* *
23142221 TTTGCGGCGTTTATGAGAAAAACGCTGCTATTTCTTTATCT
1 TTTGCGGCGTTTATGAGAAAAACGCTGCTATTGCTTTACCT
* * * * *
23142262 TTTGCTGTGTTTATGAGAAGAACGCTACTATTGCTATACCT
1 TTTGCGGCGTTTATGAGAAAAACGCTGCTATTGCTTTACCT
* * *
23142303 TTTGCGGCGTTTATG-CAAAAACGCTGCTAATGTTTTACCT
1 TTTGCGGCGTTTATGAGAAAAACGCTGCTATTGCTTTACCT
23142343 TTTGCGGCGTTT
1 TTTGCGGCGTTT
23142355 TCGATCCAAC
Statistics
Matches: 138, Mismatches: 32, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
40 61 0.44
41 77 0.56
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (41 bp):
TTTGCGGCGTTTATGAGAAAAACGCTGCTATTGCTTTACCT
Found at i:23142275 original size:81 final size:81
Alignment explanation
Indices: 23142140--23142340 Score: 214
Period size: 81 Copynumber: 2.5 Consensus size: 81
23142130 CAAAAAAATA
* *
23142140 TTTGCGGCATTTATGGAAAAAACACTGCTATTGCTTTACATTTAGTGGTGTTTATGA-AA-AATC
1 TTTGCGGCGTTTATGG-AAAAACGCTGCTATTGCTTTACATTTAGTGGTGTTTATGAGAAGAA-C
** *
23142203 GCCGTTATTAG-TTTACCT
64 GCCACTATT-GCTATACCT
* *
23142221 TTTGCGGCGTTTATGAGAAAAACGCTGCTATTTCTTTATC-TTTTGCT-GTGTTTATGAGAAGAA
1 TTTGCGGCGTTTATG-GAAAAACGCTGCTATTGCTTTA-CATTTAG-TGGTGTTTATGAGAAGAA
*
23142284 CGCTACTATTGCTATACCT
63 CGCCACTATTGCTATACCT
* * *
23142303 TTTGCGGCGTTTATGCAAAAACGCTGCTAATGTTTTAC
1 TTTGCGGCGTTTATGGAAAAACGCTGCTATTGCTTTAC
23142341 CTTTTGCGGC
Statistics
Matches: 102, Mismatches: 12, Indels: 13
0.80 0.09 0.10
Matches are distributed among these distances:
80 1 0.01
81 66 0.65
82 33 0.32
83 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.39
Consensus pattern (81 bp):
TTTGCGGCGTTTATGGAAAAACGCTGCTATTGCTTTACATTTAGTGGTGTTTATGAGAAGAACGC
CACTATTGCTATACCT
Found at i:23146084 original size:30 final size:31
Alignment explanation
Indices: 23146045--23146104 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
23146035 GGAGGTGTGA
*
23146045 TGGGAAGGGAATAAAAGTTTTAAGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAAGGGAAAAG
* **
23146076 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAAGGGAAAA
23146105 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAAGGGAAAAG
Found at i:23146329 original size:9 final size:9
Alignment explanation
Indices: 23146315--23146360 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
23146305 TATAGTTTGA
23146315 TATTCGAAT
1 TATTCGAAT
23146324 TATTCGAAT
1 TATTCGAAT
*
23146333 TATTCGAGT
1 TATTCGAAT
*
23146342 TATTCGAGT
1 TATTCGAAT
*
23146351 TATTTGAAT
1 TATTCGAAT
23146360 T
1 T
23146361 CGAAAACTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (9 bp):
TATTCGAAT
Found at i:23146431 original size:9 final size:9
Alignment explanation
Indices: 23146414--23146444 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
23146404 TCGAGTTGAT
23146414 TCGAATAAC
1 TCGAATAAC
*
23146423 TCGATTAAC
1 TCGAATAAC
23146432 TCGAATAAC
1 TCGAATAAC
23146441 TCGA
1 TCGA
23146445 TTCCTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:23150645 original size:41 final size:40
Alignment explanation
Indices: 23150615--23150733 Score: 134
Period size: 41 Copynumber: 3.0 Consensus size: 40
23150605 TGCATAAAAT
*
23150615 ACCGGCATAAAGCCTGCTAGGCA-CAAAGCCTGATACATTTC
1 ACCGGCATAAAGCCTGCTAGGCATC-AAGCCTGATA-AATTC
* * *
23150656 ACCGGCATAAAGCCTGCTAGACATCAAGTCTGAATTAATTC
1 ACCGGCATAAAGCCTGCTAGGCATCAAGCCTG-ATAAATTC
* * *
23150697 ACCGGCATCAAGCCTGCTAGGCATTAGGCCTGA-AAAT
1 ACCGGCATAAAGCCTGCTAGGCATCAAGCCTGATAAAT
23150734 CTCAGATACA
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
39 3 0.05
40 1 0.02
41 59 0.89
42 3 0.05
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (40 bp):
ACCGGCATAAAGCCTGCTAGGCATCAAGCCTGATAAATTC
Found at i:23157005 original size:7 final size:7
Alignment explanation
Indices: 23156993--23157064 Score: 58
Period size: 7 Copynumber: 10.4 Consensus size: 7
23156983 TTGGGTTCAA
23156993 GTTTAAG
1 GTTTAAG
23157000 GTTTAAG
1 GTTTAAG
23157007 GTTTAAG
1 GTTTAAG
*
23157014 GTTT-TG
1 GTTTAAG
23157020 AGTTTAAG
1 -GTTTAAG
* *
23157028 ATTTAGG
1 GTTTAAG
*
23157035 GTTT-GG
1 GTTTAAG
23157041 GTTTAAG
1 GTTTAAG
* *
23157048 GTTCAAC
1 GTTTAAG
*
23157055 TTTTAAG
1 GTTTAAG
23157062 GTT
1 GTT
23157065 CGAGTTTAAG
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
6 7 0.14
7 42 0.84
8 1 0.02
ACGTcount: A:0.24, C:0.03, G:0.28, T:0.46
Consensus pattern (7 bp):
GTTTAAG
Found at i:23157024 original size:21 final size:20
Alignment explanation
Indices: 23157000--23157050 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
23156990 CAAGTTTAAG
*
23157000 GTTTAAGGTTTAAGGTTTTGA
1 GTTTAAGGTTT-AGGGTTTGA
* *
23157021 GTTTAAGATTTAGGGTTTGG
1 GTTTAAGGTTTAGGGTTTGA
23157041 GTTTAAGGTT
1 GTTTAAGGTT
23157051 CAACTTTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (20 bp):
GTTTAAGGTTTAGGGTTTGA
Found at i:23162486 original size:56 final size:58
Alignment explanation
Indices: 23162372--23162486 Score: 155
Period size: 56 Copynumber: 2.0 Consensus size: 58
23162362 TTGGCTGATT
23162372 ATTTTATAACTTTTCATACTTGGGTGACCAAAAAAGAAATTTACTAATAGTTGAGTGACC
1 ATTTTATAACTTTTCATACTTGGGTGACC-AAAAAGAAA-TTACTAATAGTTGAGTGACC
* * *
23162432 ATTTTGTAACTTTTTTATAGTTGGGTGA-C-AAAAGAAA-TACTAATAGTTGAGTGAC
1 ATTTTATAAC-TTTTCATACTTGGGTGACCAAAAAGAAATTACTAATAGTTGAGTGAC
23162487 TACTAGTGTA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
56 18 0.35
58 8 0.16
60 10 0.20
61 15 0.29
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (58 bp):
ATTTTATAACTTTTCATACTTGGGTGACCAAAAAGAAATTACTAATAGTTGAGTGACC
Found at i:23176834 original size:49 final size:49
Alignment explanation
Indices: 23176772--23176894 Score: 158
Period size: 49 Copynumber: 2.5 Consensus size: 49
23176762 TAGGGCTTCT
* * *
23176772 AGTTGAC-GATGGTTCTGCGGTCACGGATTAGAGTATAACTCGAGTGCCC
1 AGTTGACAG-TGGTTATGCGGTCACGGATTAGAGTATAACTCAAGAGCCC
* * * *
23176821 ATTTGGCAGTGGTTATGCAGTCACGGGTTAGAGTATAACTCAAGAGCCC
1 AGTTGACAGTGGTTATGCGGTCACGGATTAGAGTATAACTCAAGAGCCC
*
23176870 AGTTGACAGTGGTTATGTGGTCACG
1 AGTTGACAGTGGTTATGCGGTCACG
23176895 TGTTCAAGTT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
49 61 0.98
50 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.28
Consensus pattern (49 bp):
AGTTGACAGTGGTTATGCGGTCACGGATTAGAGTATAACTCAAGAGCCC
Found at i:23179049 original size:20 final size:20
Alignment explanation
Indices: 23179016--23179066 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
23179006 TTTTAACAAT
* * *
23179016 ATTTTTAACTCGAACTTTGA
1 ATTTTGAACCCGAACATTGA
23179036 ATTTTGAACCCGAACATTGA
1 ATTTTGAACCCGAACATTGA
**
23179056 AACTTGAACCC
1 ATTTTGAACCC
23179067 TAAATCTAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATTTTGAACCCGAACATTGA
Found at i:23179534 original size:19 final size:20
Alignment explanation
Indices: 23179505--23179542 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
23179495 TTAAATCTTG
*
23179505 AACCTTGAACCTTAAACCCA
1 AACCTTGAACCCTAAACCCA
23179525 AACC-TGAACCCTAAACCC
1 AACCTTGAACCCTAAACCC
23179543 TGAACTCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.39, C:0.39, G:0.05, T:0.16
Consensus pattern (20 bp):
AACCTTGAACCCTAAACCCA
Found at i:23179588 original size:21 final size:21
Alignment explanation
Indices: 23179537--23179601 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
23179527 CCTGAACCCT
*
23179537 AAACCCTGAA-CTCTAAACTCA
1 AAACCCTAAACCT-TAAACTCA
***
23179558 AAATATTAAACCTTAAACTCA
1 AAACCCTAAACCTTAAACTCA
*
23179579 AAACCCTAAACTTTAAAC-CA
1 AAACCCTAAACCTTAAACTCA
23179599 AAA
1 AAA
23179602 GGCCAAGTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
20 5 0.14
21 28 0.80
22 2 0.06
ACGTcount: A:0.51, C:0.26, G:0.02, T:0.22
Consensus pattern (21 bp):
AAACCCTAAACCTTAAACTCA
Found at i:23182549 original size:17 final size:17
Alignment explanation
Indices: 23182516--23182551 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
23182506 AATGATTCAA
23182516 ATGGTATAATGATATAT
1 ATGGTATAATGATATAT
23182533 ATGGTATAATGATATAT
1 ATGGTATAATGATATAT
23182550 AT
1 AT
23182552 TTATTATGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.42
Consensus pattern (17 bp):
ATGGTATAATGATATAT
Found at i:23182827 original size:15 final size:15
Alignment explanation
Indices: 23182807--23182837 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
23182797 GTATCTAGGT
23182807 CGAGTCATTTTGGTA
1 CGAGTCATTTTGGTA
23182822 CGAGTCATTTTGGTA
1 CGAGTCATTTTGGTA
23182837 C
1 C
23182838 AAACTATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (15 bp):
CGAGTCATTTTGGTA
Found at i:23183359 original size:18 final size:18
Alignment explanation
Indices: 23183336--23183371 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
23183326 TGTTTAGGTA
23183336 TGAGTTGGAAATGAATTG
1 TGAGTTGGAAATGAATTG
*
23183354 TGAGTTGGAAATGGATTG
1 TGAGTTGGAAATGAATTG
23183372 GTTATGTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (18 bp):
TGAGTTGGAAATGAATTG
Found at i:23185449 original size:15 final size:16
Alignment explanation
Indices: 23185409--23185457 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
23185399 ACCCGTATTA
23185409 ATTTTAAAA-A-AATT
1 ATTTTAAAATATAATT
**
23185423 ATTTTATTATATAATT
1 ATTTTAAAATATAATT
23185439 -TTTTAAAATATAATAT
1 ATTTTAAAATATAAT-T
23185455 ATT
1 ATT
23185458 AAATACACTA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
14 7 0.26
15 13 0.48
16 5 0.19
17 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTTTAAAATATAATT
Found at i:23195075 original size:12 final size:13
Alignment explanation
Indices: 23195058--23195094 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
23195048 GAACCGGACA
23195058 CGAACCGAA-CTC
1 CGAACCGAAGCTC
23195070 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
23195082 CGAACCGTAGCTC
1 CGAACCGAAGCTC
23195095 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:23197627 original size:2 final size:2
Alignment explanation
Indices: 23197620--23197661 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
23197610 GAAAGACAAA
23197620 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
23197662 GGTAAGATGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:23203940 original size:47 final size:47
Alignment explanation
Indices: 23203887--23203978 Score: 184
Period size: 47 Copynumber: 2.0 Consensus size: 47
23203877 AAAATCTGAA
23203887 ATGAAAGGCTTATAAAGTTATATTTATAGCCTACTAACATTTAACCT
1 ATGAAAGGCTTATAAAGTTATATTTATAGCCTACTAACATTTAACCT
23203934 ATGAAAGGCTTATAAAGTTATATTTATAGCCTACTAACATTTAAC
1 ATGAAAGGCTTATAAAGTTATATTTATAGCCTACTAACATTTAAC
23203979 TTAACATTGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (47 bp):
ATGAAAGGCTTATAAAGTTATATTTATAGCCTACTAACATTTAACCT
Found at i:23213243 original size:11 final size:11
Alignment explanation
Indices: 23213227--23213253 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
23213217 TAGAAATTAG
23213227 TTTGTGAAACT
1 TTTGTGAAACT
23213238 TTTGTGAAACT
1 TTTGTGAAACT
23213249 TTTGT
1 TTTGT
23213254 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:23214786 original size:93 final size:92
Alignment explanation
Indices: 23214654--23214848 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
23214644 TTGATTTTAG
* *
23214654 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
23214718 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
23214746 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
23214811 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
23214839 CAAATTCATA
1 TAAATTCATA
23214849 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:23214896 original size:48 final size:52
Alignment explanation
Indices: 23214826--23214924 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
23214816 AATAATTATT
23214826 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
23214874 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
23214925 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:23214906 original size:17 final size:17
Alignment explanation
Indices: 23214881--23214914 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
23214871 ATAATTTTAA
*
23214881 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
23214898 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
23214915 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:23214931 original size:17 final size:16
Alignment explanation
Indices: 23214886--23214933 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
23214876 TTTAAATTTT
23214886 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
23214903 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
23214917 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
23214934 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:23215002 original size:18 final size:17
Alignment explanation
Indices: 23214974--23215008 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23214964 ATTATTAAGA
*
23214974 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
23214991 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
23215009 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:23215045 original size:144 final size:143
Alignment explanation
Indices: 23214954--23215233 Score: 389
Period size: 144 Copynumber: 1.9 Consensus size: 143
23214944 AAATTCATAT
* *
23214954 AAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 AAGAATACTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAA
* * *
23215019 TTATGTTTAAATATGATTAAATTATTTATTATTGATATTAATCTTATTAAAATTTAAATAAAATA
66 TTATGTTTAAATATGATTAAATTATTTA-TATTGATAATAATATTATTAAAATTCAAATAAAATA
23215084 ATTTACCAAAACAA
130 ATTTACCAAAACAA
**** *
23215098 ATTTCTGCTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAA
1 AAGAATACTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAA
* *
23215163 TTATGTTTAAATATGATTAAATTATTTATTTTTGATAATAAATATTCTTATTAAAATTTAAATAA
66 TTATGTTTAAATATGATTAAATTATTTA-TATTGATAAT-AATA---TTATTAAAATTCAAATAA
23215228 CAATAA
126 -AATAA
23215234 CAATAATCAT
Statistics
Matches: 121, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
144 95 0.79
145 3 0.02
148 18 0.15
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (143 bp):
AAGAATACTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAA
TTATGTTTAAATATGATTAAATTATTTATATTGATAATAATATTATTAAAATTCAAATAAAATAA
TTTACCAAAACAA
Found at i:23215146 original size:18 final size:17
Alignment explanation
Indices: 23215118--23215152 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23215108 ATTATTAAGA
*
23215118 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
23215135 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
23215153 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:23215415 original size:21 final size:21
Alignment explanation
Indices: 23215389--23215447 Score: 118
Period size: 21 Copynumber: 2.8 Consensus size: 21
23215379 GATTTGCTAT
23215389 TACACCTCTAATCCAATCCAA
1 TACACCTCTAATCCAATCCAA
23215410 TACACCTCTAATCCAATCCAA
1 TACACCTCTAATCCAATCCAA
23215431 TACACCTCTAATCCAAT
1 TACACCTCTAATCCAAT
23215448 ACAGCGAACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.25
Consensus pattern (21 bp):
TACACCTCTAATCCAATCCAA
Found at i:23215984 original size:45 final size:45
Alignment explanation
Indices: 23215935--23216137 Score: 241
Period size: 45 Copynumber: 4.5 Consensus size: 45
23215925 GAAACAAGAT
* * * *
23215935 AGACCATGGTTGAAAGATACCATGACAGTATACCCGAAATGAGA-A
1 AGACCATAGTTGAAAGATACTATGACATTATAACCGAAATGA-ATA
** * *
23215980 AGACCATAGTTGAAAGATACTATGGTATTA-AACTGGAATGAATA
1 AGACCATAGTTGAAAGATACTATGACATTATAACCGAAATGAATA
* * *
23216024 AAACCATAGTTGAAAGATACTATGACATTAT-ACTGGAAATGTATA
1 AGACCATAGTTGAAAGATACTATGACATTATAAC-CGAAATGAATA
* * *
23216069 AGACCATAGTTGAAAGATGCTATGACATTAAAACCGATATGAATA
1 AGACCATAGTTGAAAGATACTATGACATTATAACCGAAATGAATA
23216114 AGACCATAGTTGAAAGATACTATG
1 AGACCATAGTTGAAAGATACTATG
23216138 GCATCACTTC
Statistics
Matches: 133, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
43 1 0.01
44 38 0.29
45 92 0.69
46 2 0.02
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.25
Consensus pattern (45 bp):
AGACCATAGTTGAAAGATACTATGACATTATAACCGAAATGAATA
Found at i:23216092 original size:89 final size:90
Alignment explanation
Indices: 23215937--23216137 Score: 264
Period size: 89 Copynumber: 2.2 Consensus size: 90
23215927 AACAAGATAG
* *
23215937 ACCATGGTTGAAAGATACCATGACAGTATACCCGAAATGAGAAAGACCATAGTTGAAAGATACTA
1 ACCATAGTTGAAAGATACTATGACAGTATACCCGAAATGAGAAAGACCATAGTTGAAAGATACTA
** *
23216002 TGGTATT-AAACTGGA-ATGAATAAA
66 TGACATTAAAAC-CGATATGAATAAA
* ** * *
23216026 ACCATAGTTGAAAGATACTATGACATTATACTGGAAATGTA-TAAGACCATAGTTGAAAGATGCT
1 ACCATAGTTGAAAGATACTATGACAGTATACCCGAAATG-AGAAAGACCATAGTTGAAAGATACT
*
23216090 ATGACATTAAAACCGATATGAATAAG
65 ATGACATTAAAACCGATATGAATAAA
23216116 ACCATAGTTGAAAGATACTATG
1 ACCATAGTTGAAAGATACTATG
23216138 GCATCACTTC
Statistics
Matches: 98, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
89 63 0.64
90 35 0.36
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.25
Consensus pattern (90 bp):
ACCATAGTTGAAAGATACTATGACAGTATACCCGAAATGAGAAAGACCATAGTTGAAAGATACTA
TGACATTAAAACCGATATGAATAAA
Found at i:23216762 original size:25 final size:25
Alignment explanation
Indices: 23216734--23216785 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
23216724 TCTTTGTAGA
23216734 ATGTCAGATTTGAGCTGTCGTTTGG
1 ATGTCAGATTTGAGCTGTCGTTTGG
*
23216759 ATGTCGGATTTGAGCTGTCGTTTGG
1 ATGTCAGATTTGAGCTGTCGTTTGG
23216784 AT
1 AT
23216786 TACTTTCGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.15, C:0.12, G:0.33, T:0.40
Consensus pattern (25 bp):
ATGTCAGATTTGAGCTGTCGTTTGG
Found at i:23217831 original size:39 final size:40
Alignment explanation
Indices: 23217752--23217834 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
23217742 ACTCTATAAC
* *
23217752 CCTAATCTGACGGCGGAGACTGGTTATGGGTGTTACAACT
1 CCTAATCTGACGACAGAGACTGGTTATGGGTGTTACAACT
*
23217792 CCTAATCTGGCGACAGAGAC-GAGTTA-GGGTGTTACAACT
1 CCTAATCTGACGACAGAGACTG-GTTATGGGTGTTACAACT
23217831 CCTA
1 CCTA
23217835 CTACTGCTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
39 18 0.46
40 21 0.54
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCTAATCTGACGACAGAGACTGGTTATGGGTGTTACAACT
Found at i:23218648 original size:20 final size:18
Alignment explanation
Indices: 23218601--23218649 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
23218591 CAAGATAAAC
23218601 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
23218618 ATT-AATATAATCATTTCAAT
1 ATTAAAT-TAAT-ATTT-AAT
23218638 ATTAAATTAATA
1 ATTAAATTAATA
23218650 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
16 3 0.11
17 6 0.22
19 5 0.19
20 10 0.37
21 3 0.11
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:23221377 original size:31 final size:31
Alignment explanation
Indices: 23221339--23221403 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
23221329 AATAGTGTCC
23221339 ATCTTGGGTTCTCGTCAACCAATTAACTACA
1 ATCTTGGGTTCTCGTCAACCAATTAACTACA
23221370 ATCTTGGGTTCTCGTCAACCAATTAACTACA
1 ATCTTGGGTTCTCGTCAACCAATTAACTACA
23221401 ATC
1 ATC
23221404 AGGTTTCTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (31 bp):
ATCTTGGGTTCTCGTCAACCAATTAACTACA
Found at i:23225276 original size:18 final size:18
Alignment explanation
Indices: 23225238--23225277 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
23225228 TGCATTTTCC
* * *
23225238 ATAATATAATTATATTTA
1 ATAATAAAATTATAATAA
23225256 ATAATAAAATTATAATAA
1 ATAATAAAATTATAATAA
23225274 ATAA
1 ATAA
23225278 AAGTCATCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAATAAAATTATAATAA
Found at i:23225782 original size:5 final size:5
Alignment explanation
Indices: 23225772--23225801 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
23225762 TTTAAGTGAG
*
23225772 ATTTA ATTTA ATTTT ATTTA ATTTA ATTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA
23225802 TACAATTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
ATTTA
Found at i:23225792 original size:15 final size:15
Alignment explanation
Indices: 23225772--23225800 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
23225762 TTTAAGTGAG
23225772 ATTTAATTTAATTTT
1 ATTTAATTTAATTTT
23225787 ATTTAATTTAATTT
1 ATTTAATTTAATTT
23225801 ATACAATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATTTAATTTAATTTT
Found at i:23230882 original size:180 final size:180
Alignment explanation
Indices: 23230572--23230913 Score: 533
Period size: 180 Copynumber: 1.9 Consensus size: 180
23230562 ACTTGAACAC
23230572 TAGATTACAGATGTATCAACTACCATGAAACCTTCATTGAGGATTCAAAAGAGTCATCCTCTTAG
1 TAGATTACAGATGTATCAACTACCATGAAACCTTCATTGAGGATTCAAAAGAGTCATCCTCTTAG
* * * *
23230637 TAATGTTATTTGTGCTACAAGTCTACTATTGAAACAAAAGAGGTTAAGGATGCTAAAAGATATGA
66 AAATATTATTTGTGCTACAAATCTACTATTGAAACAAAAAAGGTTAAGGATGCTAAAAGATATGA
* *
23230702 ATACCTGAGAGGTGCCTTTAACATTTGTTGAAGACCTTTTACCATCCTCT
131 ATACCTGAGAGATGCCTTGAACATTTGTTGAAGACCTTTTACCATCCTCT
* * *
23230752 TAGATTGA-AGATGTATCGATTACCATGAGACCTTCATTGAGGATTCAAAAGAGTCATCCTCTTA
1 TAGATT-ACAGATGTATCAACTACCATGAAACCTTCATTGAGGATTCAAAAGAGTCATCCTCTTA
* * * *
23230816 GAAATATTATTTTTGCTACAAATCTACTATTGAACCAAAAAAGGTTGAGGGTGCTAAAAGATATG
65 GAAATATTATTTGTGCTACAAATCTACTATTGAAACAAAAAAGGTTAAGGATGCTAAAAGATATG
* *
23230881 AATACTTGAGAGATGCCTTGAGCATTTGTTGAA
130 AATACCTGAGAGATGCCTTGAACATTTGTTGAA
23230914 TGACATAAGG
Statistics
Matches: 146, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
180 145 0.99
181 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (180 bp):
TAGATTACAGATGTATCAACTACCATGAAACCTTCATTGAGGATTCAAAAGAGTCATCCTCTTAG
AAATATTATTTGTGCTACAAATCTACTATTGAAACAAAAAAGGTTAAGGATGCTAAAAGATATGA
ATACCTGAGAGATGCCTTGAACATTTGTTGAAGACCTTTTACCATCCTCT
Found at i:23238534 original size:86 final size:84
Alignment explanation
Indices: 23238385--23238552 Score: 230
Period size: 86 Copynumber: 2.0 Consensus size: 84
23238375 ATATAAATTC
* *
23238385 CGCTAAGAACATGACCTTTAGCGGCACTTTTATCACAATCGTTGCTAAAGAACATGACCTTTAGC
1 CGCTAAGAACATGACCTTTAGCGACACTTTTATCACAATCG-CGCTAAAGAACATGACCTTTAGC
23238450 GGTGCTTTTATCACAAACAT
65 GGTGCTTTTATCACAAACAT
* *
23238470 CGCTAAAGAACATGATCTTTAGCGACGCTTTTATCACAAATAC-CGCTAAAGAACATGACCTTTA
1 CGCT-AAGAACATGACCTTTAGCGACACTTTTATCAC-AAT-CGCGCTAAAGAACATGACCTTTA
* * *
23238534 GTGGTGTTTTTTTCACAAA
63 GCGGTGCTTTTATCACAAA
23238553 TGCAGCAAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
85 4 0.05
86 65 0.89
87 3 0.04
88 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (84 bp):
CGCTAAGAACATGACCTTTAGCGACACTTTTATCACAATCGCGCTAAAGAACATGACCTTTAGCG
GTGCTTTTATCACAAACAT
Found at i:23238550 original size:43 final size:43
Alignment explanation
Indices: 23238379--23238553 Score: 203
Period size: 43 Copynumber: 4.1 Consensus size: 43
23238369 TTTTTCATAT
* **
23238379 AAATTCCGCT-AAGAACATGACCTTTAGCGGCACTTTTATCAC
1 AAATACCGCTAAAGAACATGACCTTTAGCGGTGCTTTTATCAC
*
23238421 -AAT-CGTTGCTAAAGAACATGACCTTTAGCGGTGCTTTTATCAC
1 AAATAC--CGCTAAAGAACATGACCTTTAGCGGTGCTTTTATCAC
* * * **
23238464 AAACATCGCTAAAGAACATGATCTTTAGCGACGCTTTTATCAC
1 AAATACCGCTAAAGAACATGACCTTTAGCGGTGCTTTTATCAC
* * *
23238507 AAATACCGCTAAAGAACATGACCTTTAGTGGTGTTTTTTTCAC
1 AAATACCGCTAAAGAACATGACCTTTAGCGGTGCTTTTATCAC
23238550 AAAT
1 AAAT
23238554 GCAGCAAATA
Statistics
Matches: 111, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 3 0.03
43 102 0.92
44 2 0.02
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (43 bp):
AAATACCGCTAAAGAACATGACCTTTAGCGGTGCTTTTATCAC
Found at i:23239761 original size:87 final size:87
Alignment explanation
Indices: 23239615--23239789 Score: 332
Period size: 87 Copynumber: 2.0 Consensus size: 87
23239605 AACTCGTTCA
*
23239615 CGATCCTACATTATGAAATTATTATTACGTATATAGGAAATACTATAAACTGAAATAATTATAAG
1 CGATCCTACATTATGAAATTATTATTACGTATATAGGAAATACTATAAACCGAAATAATTATAAG
23239680 ATTTTGGAAGTACGTAATACCT
66 ATTTTGGAAGTACGTAATACCT
*
23239702 CGATCCTACATTATGAAATTATTATTACGTATATAGTAAATACTATAAACCGAAATAATTATAAG
1 CGATCCTACATTATGAAATTATTATTACGTATATAGGAAATACTATAAACCGAAATAATTATAAG
23239767 ATTTTGGAAGTACGTAATACCT
66 ATTTTGGAAGTACGTAATACCT
23239789 C
1 C
23239790 TCCTTTCTTT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.34
Consensus pattern (87 bp):
CGATCCTACATTATGAAATTATTATTACGTATATAGGAAATACTATAAACCGAAATAATTATAAG
ATTTTGGAAGTACGTAATACCT
Found at i:23241410 original size:40 final size:40
Alignment explanation
Indices: 23241352--23241495 Score: 119
Period size: 40 Copynumber: 3.6 Consensus size: 40
23241342 TTTTTGCGGC
* * *
23241352 ATTTTT-AAAACGTGCCGCTAATGGTAGACCTATAGCGAA
1 ATTTTTCAAAAAGCGCCGCTAATGCTAGACCTATAGCGAA
* * **
23241391 ATTTTTCAAAAAGCGCCGCTAATGCTTGATCTATAGCGGC
1 ATTTTTCAAAAAGCGCCGCTAATGCTAGACCTATAGCGAA
* * * * * * **
23241431 ACTTTTCAAGAAGCGCCACTAATGCTCGATCTGTAGCGGC
1 ATTTTTCAAAAAGCGCCGCTAATGCTAGACCTATAGCGAA
* * *
23241471 GTTATTCAAAAAGTGCCGCTAATGC
1 ATTTTTCAAAAAGCGCCGCTAATGC
23241496 CACTAAAGCT
Statistics
Matches: 86, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
39 6 0.07
40 80 0.93
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (40 bp):
ATTTTTCAAAAAGCGCCGCTAATGCTAGACCTATAGCGAA
Found at i:23241610 original size:40 final size:40
Alignment explanation
Indices: 23241548--23241684 Score: 195
Period size: 40 Copynumber: 3.5 Consensus size: 40
23241538 GCGCTTTTTT
*
23241548 ATCTATAGCGGCATTTTTCAAAAAGCACCGCTAATGCTCG
1 ATCTATAGCGGCGTTTTTCAAAAAGCACCGCTAATGCTCG
* * *
23241588 ATCGATGGCGGCGTTTTTCAAAAAGCTCCGCTAATGCTCG
1 ATCTATAGCGGCGTTTTTCAAAAAGCACCGCTAATGCTCG
* ** *
23241628 ATCTATAGCTGCGTTTTTC-AAAAGTGCCGCTAATGCTTG
1 ATCTATAGCGGCGTTTTTCAAAAAGCACCGCTAATGCTCG
23241667 ATCTATAGCGGCGTTTTT
1 ATCTATAGCGGCGTTTTT
23241685 TGTCCAAACG
Statistics
Matches: 86, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 34 0.40
40 52 0.60
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (40 bp):
ATCTATAGCGGCGTTTTTCAAAAAGCACCGCTAATGCTCG
Found at i:23244366 original size:48 final size:47
Alignment explanation
Indices: 23244328--23244422 Score: 147
Period size: 48 Copynumber: 2.0 Consensus size: 47
23244318 AATTATTTAC
*
23244328 TATTTT-ATTTTTGATTTGATTTGATATTTGACTAATATAATCACTTT
1 TATTTTAATTTTT-ATTTGATTTGATATTTGACCAATATAATCACTTT
*
23244375 TGTTTTCAATTTTTATTTGATTTGATATTTGACCAATATAATCACTTT
1 TATTTT-AATTTTTATTTGATTTGATATTTGACCAATATAATCACTTT
23244423 GCTTTATGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
47 5 0.11
48 33 0.75
49 6 0.14
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.56
Consensus pattern (47 bp):
TATTTTAATTTTTATTTGATTTGATATTTGACCAATATAATCACTTT
Found at i:23247072 original size:34 final size:34
Alignment explanation
Indices: 23247033--23247223 Score: 256
Period size: 34 Copynumber: 5.6 Consensus size: 34
23247023 TTTTGCTAAT
* *
23247033 GTATTGATTTGTTAGAAGCATATTAATTGCTACC
1 GTATTGATCTGTTATAAGCATATTAATTGCTACC
* * * * *
23247067 ATATTGATCTATTGTAAGCATATAAATTACTACC
1 GTATTGATCTGTTATAAGCATATTAATTGCTACC
*
23247101 GTATTGATCTGTTATAAGCATATTAATTGCTACT
1 GTATTGATCTGTTATAAGCATATTAATTGCTACC
*
23247135 GTATTGATCTGTTATAAGCATATTGATTGCTACC
1 GTATTGATCTGTTATAAGCATATTAATTGCTACC
* * *
23247169 GTATTGATCTGCTACACGCATATTAATTGCTACC
1 GTATTGATCTGTTATAAGCATATTAATTGCTACC
* *
23247203 GTATTGATTTATTATAAGCAT
1 GTATTGATCTGTTATAAGCAT
23247224 GTCATATTGC
Statistics
Matches: 133, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 133 1.00
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (34 bp):
GTATTGATCTGTTATAAGCATATTAATTGCTACC
Found at i:23247160 original size:19 final size:19
Alignment explanation
Indices: 23247102--23247161 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
23247092 ATTACTACCG
23247102 TATTGATCTGTTATAAGCA
1 TATTGATCTGTTATAAGCA
* *
23247121 TATTAAT-TGCTACT--G--
1 TATTGATCTGTTA-TAAGCA
23247136 TATTGATCTGTTATAAGCA
1 TATTGATCTGTTATAAGCA
23247155 TATTGAT
1 TATTGAT
23247162 TGCTACCGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 12
0.66 0.09 0.26
Matches are distributed among these distances:
15 7 0.23
16 4 0.13
17 2 0.06
18 4 0.13
19 14 0.45
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (19 bp):
TATTGATCTGTTATAAGCA
Found at i:23247175 original size:15 final size:15
Alignment explanation
Indices: 23247155--23247211 Score: 69
Period size: 15 Copynumber: 3.5 Consensus size: 15
23247145 GTTATAAGCA
23247155 TATTGATTGCTACCG
1 TATTGATTGCTACCG
23247170 TATTGATCTGCTACACG
1 TATTGAT-TGCTAC-CG
*
23247187 CATATTAATTGCTACCG
1 --TATTGATTGCTACCG
23247204 TATTGATT
1 TATTGATT
23247212 TATTATAAGC
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
15 14 0.39
16 6 0.17
17 4 0.11
18 6 0.17
19 6 0.17
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (15 bp):
TATTGATTGCTACCG
Found at i:23247438 original size:45 final size:45
Alignment explanation
Indices: 23247335--23247480 Score: 140
Period size: 45 Copynumber: 3.3 Consensus size: 45
23247325 ACTGCAAATA
* * *
23247335 TGTTGTGCATCCACAACCCAATGACA-ACTTTTACCTACAAACA---
1 TGTTGTGCATCCACAATCCAATGGCAGA-TTTTATCTACAAA-ATTT
* ***
23247378 TGTTCTGCATCCACAA-CCAAGTGGCAGATTTTATCTGTTAAATTT
1 TGTTGTGCATCCACAATCCAA-TGGCAGATTTTATCTACAAAATTT
* *
23247423 TGTTGTGCATCCACAATCCAATGGCAGTTTTTATTTACAAAATTT
1 TGTTGTGCATCCACAATCCAATGGCAGATTTTATCTACAAAATTT
*
23247468 TGTTGTGTATCCA
1 TGTTGTGCATCCA
23247481 TAGCCCAGTG
Statistics
Matches: 84, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
42 5 0.06
43 28 0.33
44 1 0.01
45 46 0.55
46 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.36
Consensus pattern (45 bp):
TGTTGTGCATCCACAATCCAATGGCAGATTTTATCTACAAAATTT
Found at i:23249645 original size:21 final size:22
Alignment explanation
Indices: 23249608--23249648 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
23249598 TCAAATAAAC
23249608 ATAAAAGATAAATGAAAAGATA
1 ATAAAAGATAAATGAAAAGATA
23249630 ATAAAA-AT-AATGGAAAAGA
1 ATAAAAGATAAAT-GAAAAGA
23249649 CTATAGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.17
21 9 0.50
22 6 0.33
ACGTcount: A:0.68, C:0.00, G:0.15, T:0.17
Consensus pattern (22 bp):
ATAAAAGATAAATGAAAAGATA
Found at i:23258454 original size:126 final size:126
Alignment explanation
Indices: 23258284--23258525 Score: 315
Period size: 126 Copynumber: 1.9 Consensus size: 126
23258274 TGGAACACAC
* * * * * ** *
23258284 CTGTGTCTCTGGCTCATGTGGTCCAAAATGGCAAACATTGAGTCACAGGGCATGGACGCACGCCC
1 CTGTGTCCCCGGCCCATGTGGTCCAAAATGGCAAACAGTAAGTCACACAGCATGGACACACGCCC
** * *
23258349 GTGTCCTTGGTTCGTATGG-TCTTTAATGGAAAATAGTGACTTACACGGCCTGGGCAGATGT
66 GTGTCCTTGGCCCGTATGGTTC-TTAATAGAAAATAGTGACTCACACGGCCTGGGCAGATGT
** * *
23258410 CTGTGTCCCCGGCCCATGTGGTCCTTAATGGCAAACAGTAAGTCACACAGCTTGGACACATGCCC
1 CTGTGTCCCCGGCCCATGTGGTCCAAAATGGCAAACAGTAAGTCACACAGCATGGACACACGCCC
*
23258475 GTGTCCTTGGCCCGTATGGTTCTTAATAGAAAATAGTGAGTCACACGGCCT
66 GTGTCCTTGGCCCGTATGGTTCTTAATAGAAAATAGTGACTCACACGGCCT
23258526 AGCACAAGAC
Statistics
Matches: 98, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
126 96 0.98
127 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (126 bp):
CTGTGTCCCCGGCCCATGTGGTCCAAAATGGCAAACAGTAAGTCACACAGCATGGACACACGCCC
GTGTCCTTGGCCCGTATGGTTCTTAATAGAAAATAGTGACTCACACGGCCTGGGCAGATGT
Found at i:23258487 original size:63 final size:63
Alignment explanation
Indices: 23258254--23258523 Score: 186
Period size: 63 Copynumber: 4.3 Consensus size: 63
23258244 CCTGAATTAT
* * * * * ** *
23258254 AAACAGTGAGTCACATGGCCTGGAACACA--CCTGTGT-CTCTGGCTCATGTGGTCCAAAATGGC
1 AAACAGTGAGTCACACGGCATGG-ACACATGCCCGTGTCCT-TGGCCCATATGGTCCTTAATGGA
* * * * ** * *
23258316 AAACATTGAGTCACAGGGCATGGACGCACGCCCGTGTCCTTGGTTCGTATGGTCTTTAATGGA
1 AAACAGTGAGTCACACGGCATGGACACATGCCCGTGTCCTTGGCCCATATGGTCCTTAATGGA
* * * * * * * * ** * *
23258379 AAATAGTGACTTACACGGCCTGGGCAGATGTCTGTGTCCCCGGCCCATGTGGTCCTTAATGGC
1 AAACAGTGAGTCACACGGCATGGACACATGCCCGTGTCCTTGGCCCATATGGTCCTTAATGGA
* * * * * *
23258442 AAACAGTAAGTCACACAGCTTGGACACATGCCCGTGTCCTTGGCCCGTATGGTTCTTAATAGA
1 AAACAGTGAGTCACACGGCATGGACACATGCCCGTGTCCTTGGCCCATATGGTCCTTAATGGA
*
23258505 AAATAGTGAGTCACACGGC
1 AAACAGTGAGTCACACGGC
23258524 CTAGCACAAG
Statistics
Matches: 153, Mismatches: 52, Indels: 5
0.73 0.25 0.02
Matches are distributed among these distances:
61 4 0.03
62 20 0.13
63 127 0.83
64 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.24
Consensus pattern (63 bp):
AAACAGTGAGTCACACGGCATGGACACATGCCCGTGTCCTTGGCCCATATGGTCCTTAATGGA
Found at i:23264154 original size:19 final size:17
Alignment explanation
Indices: 23264110--23264158 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
23264100 GTGTCGTTCG
*
23264110 TTTCCAAAACATTATTCA
1 TTTCC-AAACGTTATTCA
*
23264128 TTTACAAATCGTTATTCAA
1 TTTCCAAA-CGTTATTC-A
23264147 TTTCCAAACGTT
1 TTTCCAAACGTT
23264159 TTTTTATTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 3 0.12
18 15 0.58
19 8 0.31
ACGTcount: A:0.35, C:0.20, G:0.04, T:0.41
Consensus pattern (17 bp):
TTTCCAAACGTTATTCA
Found at i:23266891 original size:13 final size:13
Alignment explanation
Indices: 23266873--23266897 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23266863 GGCTTTACAT
23266873 GGATAAGTAATAC
1 GGATAAGTAATAC
23266886 GGATAAGTAATA
1 GGATAAGTAATA
23266898 TCAAATTGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.24, T:0.24
Consensus pattern (13 bp):
GGATAAGTAATAC
Found at i:23273690 original size:22 final size:21
Alignment explanation
Indices: 23273661--23273706 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
23273651 GTGACAAATA
*
23273661 AATAATTATATAT-ATTCTTAT
1 AATAATTAT-TATGATGCTTAT
23273682 AATAGATTATTATGATGCTTAT
1 AATA-ATTATTATGATGCTTAT
23273704 AAT
1 AAT
23273707 GCCATACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (21 bp):
AATAATTATTATGATGCTTAT
Found at i:23275462 original size:25 final size:26
Alignment explanation
Indices: 23275421--23275478 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 26
23275411 GAACTAGACC
*
23275421 AGGATTAGAACTTAAGTTTAGAAATT
1 AGGATTAGAACTTAAGTTAAGAAATT
* *
23275447 TGGATTAG-ACTTAAGTTAAGAAGTT
1 AGGATTAGAACTTAAGTTAAGAAATT
23275472 AGGATTA
1 AGGATTA
23275479 TATTTTGTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 21 0.75
26 7 0.25
ACGTcount: A:0.40, C:0.03, G:0.22, T:0.34
Consensus pattern (26 bp):
AGGATTAGAACTTAAGTTAAGAAATT
Found at i:23282743 original size:4 final size:4
Alignment explanation
Indices: 23282734--23282765 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
23282724 TATTTTTATT
23282734 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
23282766 CTTAGTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:23284158 original size:6 final size:6
Alignment explanation
Indices: 23284147--23284181 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
23284137 CAATTTTGTG
23284147 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
23284182 CAATAATAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:23284189 original size:18 final size:18
Alignment explanation
Indices: 23284147--23284189 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
23284137 CAATTTTGTG
*
23284147 AAAAATAAAAATAAAAAT
1 AAAAATAAAAATAAAAAC
23284165 AAAAATAAAAATAAAAAC
1 AAAAATAAAAATAAAAAC
*
23284183 AATAATA
1 AAAAATA
23284190 GGAAAAGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (18 bp):
AAAAATAAAAATAAAAAC
Found at i:23284254 original size:22 final size:21
Alignment explanation
Indices: 23284226--23284273 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
23284216 TGTAGACAAC
23284226 TTTTTTTTTGCGCTTTTTCCT
1 TTTTTTTTTGCGCTTTTTCCT
* *
23284247 TCTTTTTTTTGCGTTTTTTGCT
1 T-TTTTTTTTGCGCTTTTTCCT
23284269 TTTTT
1 TTTTT
23284274 CTGTTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.00, C:0.15, G:0.10, T:0.75
Consensus pattern (21 bp):
TTTTTTTTTGCGCTTTTTCCT
Found at i:23287323 original size:48 final size:47
Alignment explanation
Indices: 23287259--23287375 Score: 121
Period size: 47 Copynumber: 2.5 Consensus size: 47
23287249 CAATGCCATA
* * * *
23287259 TCCCAGATATGTTCTTACA-TGGGATCACATATCGGTGCCGATG-CTATG
1 TCCCAGACATGGTCTTACACTGGCA-CACATAT-GGAGCCGATGTC-ATG
* * *
23287307 TCCCAGACATGGTCTTACACTGGCACTCATCTTGAGCCGATGTCATG
1 TCCCAGACATGGTCTTACACTGGCACACATATGGAGCCGATGTCATG
*
23287354 TCCTAGACATGGTCTTACACTG
1 TCCCAGACATGGTCTTACACTG
23287376 ACTTTTCGCT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
47 32 0.54
48 23 0.39
49 4 0.07
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.30
Consensus pattern (47 bp):
TCCCAGACATGGTCTTACACTGGCACACATATGGAGCCGATGTCATG
Found at i:23287443 original size:49 final size:49
Alignment explanation
Indices: 23287293--23287474 Score: 219
Period size: 49 Copynumber: 3.7 Consensus size: 49
23287283 TCACATATCG
* * *
23287293 GTGCCGATGCTATGTCCCAGACATGGTCTTACACTGGCACTCATC-T-T
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCCTCGTCT
* * * ** *
23287340 GAGCCGATGTCATGTCCTAGACATGGTCTTACACTGACTTTTCGCT-GTCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACTC-CTCGTCT
*
23287390 GTGCCGATGCCATGTCCCAGA-ATGGTCTTACACTAACACTCCTCGGTCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCCTC-GTCT
23287439 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTG
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTG
23287475 GCACACTTAC
Statistics
Matches: 111, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
47 35 0.32
48 4 0.04
49 41 0.37
50 31 0.28
ACGTcount: A:0.19, C:0.30, G:0.22, T:0.29
Consensus pattern (49 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCCTCGTCT
Found at i:23287462 original size:99 final size:97
Alignment explanation
Indices: 23287293--23287474 Score: 267
Period size: 99 Copynumber: 1.9 Consensus size: 97
23287283 TCACATATCG
* ** * *
23287293 GTGCCGATGCTATGTCCCAGACATGGTCTTACACTGGCACTCATCTTGAGCCGATGTCATGTCCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAACACTCATCTTGAGCCGATGCCATGTCCC
23287358 AGACATGGTCTTACACTGACTTTTCGCTGTCC
66 AGACATGGTCTTACACTGACTTTTCGCTGTCC
* *
23287390 GTGCCGATGCCATGTCCCAGA-ATGGTCTTACACTAACACTCCTCGGTCTGTGCCGATGCCATGT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAACACTCATC--T-TGAGCCGATGCCATGT
23287454 CCCAGACATGGTCTTACACTG
63 CCCAGACATGGTCTTACACTG
23287475 GCACACTTAC
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
96 20 0.27
97 20 0.27
98 1 0.01
99 34 0.45
ACGTcount: A:0.19, C:0.30, G:0.22, T:0.29
Consensus pattern (97 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAACACTCATCTTGAGCCGATGCCATGTCCC
AGACATGGTCTTACACTGACTTTTCGCTGTCC
Found at i:23287553 original size:44 final size:44
Alignment explanation
Indices: 23287485--23287593 Score: 148
Period size: 44 Copynumber: 2.5 Consensus size: 44
23287475 GCACACTTAC
* * * * *
23287485 TGCCATGGTCTAACCATGGTCTTTTCTGTAAATTCTT-TCTTAAT
1 TGCCATGTTATAAACATGGACTTTTCCGTAAATTCTTCT-TTAAT
*
23287529 TGCCATGTTATAAACATGGACTTTTCCGTCAATTCTTCTTTAAT
1 TGCCATGTTATAAACATGGACTTTTCCGTAAATTCTTCTTTAAT
23287573 TGCCATGTTATAAACATGGAC
1 TGCCATGTTATAAACATGGAC
23287594 CTTGAGATAT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 57 0.98
45 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (44 bp):
TGCCATGTTATAAACATGGACTTTTCCGTAAATTCTTCTTTAAT
Found at i:23290768 original size:18 final size:18
Alignment explanation
Indices: 23290718--23290768 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
23290708 AATAAAAAAC
*
23290718 GTTTTGAAATTGAATAAT
1 GTTTTGAAAATGAATAAT
* *
23290736 GATTTGTAAATGAATAAT
1 GTTTTGAAAATGAATAAT
*
23290754 GTTTTGAAAACGAAT
1 GTTTTGAAAATGAAT
23290769 GACACGATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.41, C:0.02, G:0.18, T:0.39
Consensus pattern (18 bp):
GTTTTGAAAATGAATAAT
Found at i:23300392 original size:25 final size:25
Alignment explanation
Indices: 23300355--23300419 Score: 114
Period size: 25 Copynumber: 2.6 Consensus size: 25
23300345 ATAAAACCCT
*
23300355 AAAA-CTAAGCTAAAGAGATGAAAG
1 AAAACCTAAACTAAAGAGATGAAAG
23300379 AAAACCTAAACTAAAGAGATGAAAG
1 AAAACCTAAACTAAAGAGATGAAAG
23300404 AAAACCTAAACTAAAG
1 AAAACCTAAACTAAAG
23300420 CTCTCCTCCT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
24 4 0.10
25 35 0.90
ACGTcount: A:0.60, C:0.12, G:0.15, T:0.12
Consensus pattern (25 bp):
AAAACCTAAACTAAAGAGATGAAAG
Found at i:23300418 original size:30 final size:30
Alignment explanation
Indices: 23300347--23300418 Score: 82
Period size: 25 Copynumber: 2.5 Consensus size: 30
23300337 AATAAAAAAT
*
23300347 AAAACCCTAAAACTAAGCTAAAGAGATGAAAG
1 AAAA-CCT-AAACTAAACTAAAGAGATGAAAG
23300379 AAAA-C----CTAAACTAAAGAGATGAAAG
1 AAAACCTAAACTAAACTAAAGAGATGAAAG
23300404 AAAACCTAAACTAAA
1 AAAACCTAAACTAAA
23300419 GCTCTCCTCC
Statistics
Matches: 34, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
25 23 0.68
26 1 0.03
30 6 0.18
32 4 0.12
ACGTcount: A:0.60, C:0.15, G:0.12, T:0.12
Consensus pattern (30 bp):
AAAACCTAAACTAAACTAAAGAGATGAAAG
Found at i:23301871 original size:31 final size:32
Alignment explanation
Indices: 23301818--23301877 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
23301808 AACAGTCCAT
23301818 TGACTTAAAATAAAAACTTTCAAATAGTTTAG
1 TGACTTAAAATAAAAACTTTCAAATAGTTTAG
* *
23301850 TGACTT-AAATGAATACTTTCAAATAGTT
1 TGACTTAAAATAAAAACTTTCAAATAGTT
23301878 CAATAACCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 20 0.77
32 6 0.23
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (32 bp):
TGACTTAAAATAAAAACTTTCAAATAGTTTAG
Found at i:23311877 original size:5 final size:5
Alignment explanation
Indices: 23311867--23311924 Score: 77
Period size: 5 Copynumber: 11.8 Consensus size: 5
23311857 AATTATGTTT
23311867 TTATA TTATA TTATTA TTA-A -TATA TTATA TTATA TTATA TTAT- TATATA
1 TTATA TTATA TTA-TA TTATA TTATA TTATA TTATA TTATA TTATA T-TATA
23311916 TTATA TTAT
1 TTATA TTAT
23311925 TATATATATA
Statistics
Matches: 48, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
3 2 0.04
4 3 0.06
5 37 0.77
6 6 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:23311883 original size:3 final size:3
Alignment explanation
Indices: 23311870--23311927 Score: 56
Period size: 3 Copynumber: 21.0 Consensus size: 3
23311860 TATGTTTTTA
*
23311870 TAT TA- TAT TAT TAT TAA TA- TAT TA- TAT TA- TAT TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23311913 ATAT TA- TAT TAT TAT
1 -TAT TAT TAT TAT TAT
23311928 ATATATATGA
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
2 12 0.26
3 32 0.68
4 3 0.06
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:23311925 original size:15 final size:15
Alignment explanation
Indices: 23311868--23311935 Score: 97
Period size: 15 Copynumber: 4.7 Consensus size: 15
23311858 ATTATGTTTT
23311868 TATATTATATTATTA
1 TATATTATATTATTA
*
23311883 T-TAATATATTA-TA
1 TATATTATATTATTA
23311896 TTATATTATATTATTA
1 -TATATTATATTATTA
23311912 TATATTATATTATTA
1 TATATTATATTATTA
23311927 TATA-TATAT
1 TATATTATAT
23311936 GACAAAGAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
13 2 0.04
14 15 0.31
15 29 0.60
16 2 0.04
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TATATTATATTATTA
Found at i:23311930 original size:10 final size:10
Alignment explanation
Indices: 23311870--23311931 Score: 58
Period size: 10 Copynumber: 6.0 Consensus size: 10
23311860 TATGTTTTTA
23311870 TATTATATTAT
1 TATTATA-TAT
23311881 TATTA-ATA-
1 TATTATATAT
23311889 TATTATAT-T
1 TATTATATAT
23311898 ATATTATATTAT
1 -TATTATA-TAT
23311910 TATATATTATAT
1 TAT-TA-TATAT
23311922 TATTATATAT
1 TATTATATAT
23311932 ATATGACAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
8 5 0.11
9 4 0.09
10 13 0.30
11 11 0.25
12 9 0.20
13 2 0.05
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TATTATATAT
Found at i:23312001 original size:40 final size:40
Alignment explanation
Indices: 23311944--23312039 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 40
23311934 ATGACAAAGA
23311944 AAGAAAGAAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
1 AAGAAAG-AAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
* *
23311985 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
*
23312025 AAGGAAGGAAAGAAA
1 AA-GAAAGAAAGAAA
23312040 GAAAGAAAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 33 0.66
41 17 0.34
ACGTcount: A:0.64, C:0.08, G:0.28, T:0.00
Consensus pattern (40 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
Found at i:23313450 original size:41 final size:39
Alignment explanation
Indices: 23313402--23313513 Score: 111
Period size: 37 Copynumber: 2.9 Consensus size: 39
23313392 TCGACCTTGA
23313402 GTCGATGAGACACTGGGTGTCATACTATTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCA-ACTATTACTTCGGATAG
* ** ** * *
23313442 ATTCGATGAGGTACTGGGTACCAAC--TTACTTCGGCTTG
1 -GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
* *
23313480 GCCGATGAGACACTGGGTGTCAACTATTGCTTCG
1 GTCGATGAGACACTGGGTGTCAACTATTACTTCG
23313514 AACTATCCGA
Statistics
Matches: 55, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
37 18 0.33
38 11 0.20
39 7 0.13
40 2 0.04
41 17 0.31
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
Found at i:23324573 original size:14 final size:13
Alignment explanation
Indices: 23324525--23324574 Score: 52
Period size: 12 Copynumber: 4.0 Consensus size: 13
23324515 ACTGGTCATA
23324525 GAGAGA-ATTGAG
1 GAGAGATATTGAG
* *
23324537 GAGGGATATT-TG
1 GAGAGATATTGAG
23324549 GAGAGAT-TTGAG
1 GAGAGATATTGAG
23324561 GAGAGAATATTGAG
1 GAGAG-ATATTGAG
23324575 ATTTGGGGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 2 0.07
12 18 0.60
13 5 0.17
14 5 0.17
ACGTcount: A:0.36, C:0.00, G:0.40, T:0.24
Consensus pattern (13 bp):
GAGAGATATTGAG
Found at i:23325731 original size:27 final size:27
Alignment explanation
Indices: 23325687--23325912 Score: 267
Period size: 27 Copynumber: 8.3 Consensus size: 27
23325677 ACCCCAAAAT
* * *
23325687 AGGTAAAATAACCAAAATATCCCTATA
1 AGGTAAAATGACCAAAATACCCCCATA
* *
23325714 TGGTAAAATGACCTAAATACCCCCAATA
1 AGGTAAAATGACCAAAATACCCCC-ATA
* *
23325742 AGGTAAAATGATCGAAATACCCCCAT-
1 AGGTAAAATGACCAAAATACCCCCATA
*
23325768 AGGATAAAATGACTAAAATACCCCCATA
1 AGG-TAAAATGACCAAAATACCCCCATA
*
23325796 AGGTAAAATGACCAAAATACCCCTATA
1 AGGTAAAATGACCAAAATACCCCCATA
* * * *
23325823 GGGTAAAATGATCAAAATATCCCTATA
1 AGGTAAAATGACCAAAATACCCCCATA
23325850 AGGTAAAATGACCAAAATACCCCCATA
1 AGGTAAAATGACCAAAATACCCCCATA
* *
23325877 GGGTAAAATGA-TAGAAATACCCCCATA
1 AGGTAAAATGACCA-AAATACCCCCATA
*
23325904 GGGTAAAAT
1 AGGTAAAAT
23325913 AACTATTATA
Statistics
Matches: 173, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.02
27 142 0.82
28 27 0.16
ACGTcount: A:0.46, C:0.20, G:0.13, T:0.20
Consensus pattern (27 bp):
AGGTAAAATGACCAAAATACCCCCATA
Found at i:23331986 original size:51 final size:50
Alignment explanation
Indices: 23331918--23332123 Score: 193
Period size: 51 Copynumber: 4.0 Consensus size: 50
23331908 GCACCACCCT
*
23331918 TGTGATCAATTCTATCCGGTACACATAGTAGCCTACAC-TGAGTACTACACA
1 TGTGA-CAATACTATCCGGTACACATAGTAGCCTACACAT-AGTACTACACA
* * * *
23331969 TGTGACTAATACCATCCGGTACACGTAGTAGGCTGCACATAGTACTACACA
1 TGTGAC-AATACTATCCGGTACACATAGTAGCCTACACATAGTACTACACA
* * ** *
23332020 CGTGACCAA-AGCTATCCGGTACACATAATAGCC-AGCATTTAGTATTACACA
1 TGTGA-CAATA-CTATCCGGTACACATAGTAGCCTA-CACATAGTACTACACA
* *** *
23332071 TGTGACCATAACTATCTTATACTCATAGTAGCCTACACATAGTACTACACA
1 TGTGACAAT-ACTATCCGGTACACATAGTAGCCTACACATAGTACTACACA
23332122 TG
1 TG
23332124 AGTTCTCATG
Statistics
Matches: 123, Mismatches: 24, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
50 4 0.03
51 115 0.93
52 4 0.03
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (50 bp):
TGTGACAATACTATCCGGTACACATAGTAGCCTACACATAGTACTACACA
Found at i:23332488 original size:22 final size:22
Alignment explanation
Indices: 23332463--23332504 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
23332453 CAAATTATTC
23332463 ATTCTAGCCCAAAAATCACACT
1 ATTCTAGCCCAAAAATCACACT
*
23332485 ATTCTAGTCCAAAAATCACA
1 ATTCTAGCCCAAAAATCACA
23332505 TTATGGGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.29, G:0.05, T:0.24
Consensus pattern (22 bp):
ATTCTAGCCCAAAAATCACACT
Found at i:23338140 original size:12 final size:12
Alignment explanation
Indices: 23338123--23338152 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
23338113 TTAAACTCAA
23338123 TAATATTTAATT
1 TAATATTTAATT
23338135 TAATATTTAATT
1 TAATATTTAATT
23338147 TAATAT
1 TAATAT
23338153 CTTATTCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TAATATTTAATT
Found at i:23338613 original size:51 final size:51
Alignment explanation
Indices: 23338522--23338721 Score: 235
Period size: 51 Copynumber: 3.9 Consensus size: 51
23338512 CCCTAATGAT
* *
23338522 CAATGCTATCCGGTACACATAATAGCCTACAC-TGAGTACTACACATGTGAC
1 CAATACTATCCGGTACACATAGTAGCCTACACAT-AGTACTACACATGTGAC
* * * * *
23338573 CAATACCATCCGGTACACGTAGTAGCCTGCACATAATACTACACACGTGAC
1 CAATACTATCCGGTACACATAGTAGCCTACACATAGTACTACACATGTGAC
* *
23338624 CAA-AGCTATCCGGTACACATAGTAGCCAACACTTAGTACTACACATGTGAC
1 CAATA-CTATCCGGTACACATAGTAGCCTACACATAGTACTACACATGTGAC
*** *
23338675 C-ATAACTATCTTATACTCATAGTAGCCTACACATAGTACTACACATG
1 CAAT-ACTATCCGGTACACATAGTAGCCTACACATAGTACTACACATG
23338722 AGTTCTCATG
Statistics
Matches: 125, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
50 2 0.02
51 121 0.97
52 2 0.02
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.23
Consensus pattern (51 bp):
CAATACTATCCGGTACACATAGTAGCCTACACATAGTACTACACATGTGAC
Found at i:23338698 original size:102 final size:102
Alignment explanation
Indices: 23338526--23338719 Score: 273
Period size: 102 Copynumber: 1.9 Consensus size: 102
23338516 AATGATCAAT
* *
23338526 GCTATCCGGTACACATAATAGCCTACACTGAGTACTACACATGTGACCAATACCATCCGGTACAC
1 GCTATCCGGTACACATAATAGCCAACACTGAGTACTACACATGTGACCAATACCATCCGATACAC
* *
23338591 GTAGTAGCCTGCACATAATACTACACACGTGACCAAA
66 ATAGTAGCCTACACATAATACTACACACGTGACCAAA
* * * ** *
23338628 GCTATCCGGTACACATAGTAGCCAACACTTAGTACTACACATGTGACC-ATAACTATCTTATACT
1 GCTATCCGGTACACATAATAGCCAACACTGAGTACTACACATGTGACCAAT-ACCATCCGATACA
*
23338692 CATAGTAGCCTACACATAGTACTACACA
65 CATAGTAGCCTACACATAATACTACACA
23338720 TGAGTTCTCA
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
101 2 0.03
102 78 0.98
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (102 bp):
GCTATCCGGTACACATAATAGCCAACACTGAGTACTACACATGTGACCAATACCATCCGATACAC
ATAGTAGCCTACACATAATACTACACACGTGACCAAA
Found at i:23342060 original size:44 final size:44
Alignment explanation
Indices: 23341992--23342215 Score: 157
Period size: 44 Copynumber: 4.9 Consensus size: 44
23341982 TAGATCATAT
* * *
23341992 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAG
1 CAGATAGAAGCTAGTAATCTTATCTCCCTGAGATTACAGCGGAG
* *
23342036 CAGATAGAAGCTAGTAATCCTATCTCCCTGAGATTA-AGTGGAG
1 CAGATAGAAGCTAGTAATCTTATCTCCCTGAGATTACAGCGGAG
* * * * * * * *
23342079 CGGATTA-AA-ATAAATGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCGCAT
1 CAGA-TAGAAGCT-AGTAATCTTATCTCCCTG-AG--AT--T--A-CAG--CGGAG
* * *
23342133 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCTGAG
1 CAGATAGAAGCTAGTAATCTTATCTCCCTGAGATTACAGCGGAG
* *
23342177 CAGATGGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
1 CAGATAGAAGCTAGTAATCTTATCTCCCTGAGATTACAG
23342216 TAGAGCGGAT
Statistics
Matches: 137, Mismatches: 28, Indels: 30
0.70 0.14 0.15
Matches are distributed among these distances:
42 1 0.01
43 25 0.18
44 74 0.54
46 4 0.03
47 1 0.01
48 1 0.01
49 1 0.01
50 1 0.01
51 2 0.01
52 2 0.01
53 3 0.02
54 21 0.15
55 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (44 bp):
CAGATAGAAGCTAGTAATCTTATCTCCCTGAGATTACAGCGGAG
Found at i:23342292 original size:142 final size:142
Alignment explanation
Indices: 23341852--23342419 Score: 913
Period size: 142 Copynumber: 4.0 Consensus size: 142
23341842 TAAGGAAGCG
* *
23341852 GATTGAAGCCAGAAATATTATCTCCCTGAGATTACAGCGGAGCAGATAAAAGCTAGTAATCCTAT
1 GATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATAGAAGCTAGTAATCCTAT
* *
23341917 CTCTCTGAGATTACAGTAGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAAAG
66 CTCCCTGAGATTACAGTAGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAAAG
**
23341982 TAGATCATATCA
131 TAGATCGCATCA
23341994 GATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATAGAAGCTAGTAATCCTAT
1 GATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATAGAAGCTAGTAATCCTAT
* * * *
23342059 CTCCCTGAGATTA-AGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTGAAGTTATAGTAGAG
66 CTCCCTGAGATTACAGTAGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAAAG
23342123 TAGATCGCATCA
131 TAGATCGCATCA
* * *
23342135 GATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCTGAGCAGATGGAAGCTAGTAATCCTAT
1 GATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATAGAAGCTAGTAATCCTAT
*
23342200 CTCCCTGAGATTACAGTAGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAATAAAG
66 CTCCCTGAGATTACAGTAGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAAAG
*
23342265 TAGATCGTATCA
131 TAGATCGCATCA
* * * *
23342277 GATTGAAGCCAGAAATCTTATCTCTCTGAGCTTACAGCTGAGCAGATTGAAGCTAGTAATCCTAT
1 GATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATAGAAGCTAGTAATCCTAT
* * * * *
23342342 CTCCCTGAGATTATAGCAGAGCGGATTAAGATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAG
66 CTCCCTGAGATTACAGTAGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAAAG
23342407 TAGATCGCATCA
131 TAGATCGCATCA
23342419 G
1 G
23342420 GTTTTATCTC
Statistics
Matches: 395, Mismatches: 30, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
141 131 0.33
142 264 0.67
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.28
Consensus pattern (142 bp):
GATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATAGAAGCTAGTAATCCTAT
CTCCCTGAGATTACAGTAGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAAAG
TAGATCGCATCA
Found at i:23342343 original size:44 final size:44
Alignment explanation
Indices: 23342275--23342368 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
23342265 TAGATCGTAT
* * * *
23342275 CAGATTGAAGCCAGAAATCTTATCTCTCTGAGCTTACAGCTGAG
1 CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCAGAG
* * *
23342319 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTATAGCAGAG
1 CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCAGAG
*
23342363 CGGATT
1 CAGATT
23342369 AAGATAAAGG
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (44 bp):
CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCAGAG
Found at i:23342806 original size:13 final size:13
Alignment explanation
Indices: 23342784--23342817 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
23342774 GGCCCAAACT
23342784 AAATAATAAATACA
1 AAATAATAAATA-A
23342798 AAA-AATAAATAA
1 AAATAATAAATAA
23342810 AAATAATA
1 AAATAATA
23342818 GTCCAACGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.21
13 12 0.63
14 3 0.16
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (13 bp):
AAATAATAAATAA
Found at i:23344396 original size:3 final size:3
Alignment explanation
Indices: 23344388--23344432 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
23344378 TTTTATTTAG
23344388 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
23344433 GTTTACATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:23354890 original size:60 final size:59
Alignment explanation
Indices: 23354784--23354907 Score: 158
Period size: 60 Copynumber: 2.1 Consensus size: 59
23354774 CTAGTTAGAC
* * * * *
23354784 TCCTTCATTCCATGCTTGTCGAGAAGGAATCATTAAATCACTGACTCCTTTGGGTTTGA
1 TCCTTCATTCCATGCTTGTCGAGAAGGAATAATTAAATCACCGACTCATTGGGGTTCGA
* * * *
23354843 TTCCTTCATTGCATGTTTGTCGAGAATGAATAATTAAATCGCCGACTCATTGGGGTTCGA
1 -TCCTTCATTCCATGCTTGTCGAGAAGGAATAATTAAATCACCGACTCATTGGGGTTCGA
23354903 TCCTT
1 TCCTT
23354908 GGAATACTCA
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
59 5 0.09
60 50 0.91
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.36
Consensus pattern (59 bp):
TCCTTCATTCCATGCTTGTCGAGAAGGAATAATTAAATCACCGACTCATTGGGGTTCGA
Found at i:23361207 original size:17 final size:17
Alignment explanation
Indices: 23361185--23361227 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
23361175 ACAAGGATAT
*
23361185 TTATTCTAACAGTCAAC
1 TTATTCTAACAGTCAAA
23361202 TTATTCTAACAGTCAAA
1 TTATTCTAACAGTCAAA
23361219 TTATT-TAAC
1 TTATTCTAAC
23361228 TGCTGATAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 4 0.16
17 21 0.84
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.40
Consensus pattern (17 bp):
TTATTCTAACAGTCAAA
Found at i:23362165 original size:61 final size:61
Alignment explanation
Indices: 23362070--23362191 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
23362060 GGCTCACTTA
23362070 GCACATGTTATGGAAATTTTTCATATTCTATAATTTTCTCTTTAGATCTAGTATTTAGTTT
1 GCACATGTTATGGAAATTTTTCATATTCTATAATTTTCTCTTTAGATCTAGTATTTAGTTT
23362131 GCACATGTTATGGAAATTTTTCATATTCTATAATTTTCTCTTTAGATCTAGTATTTAGTTT
1 GCACATGTTATGGAAATTTTTCATATTCTATAATTTTCTCTTTAGATCTAGTATTTAGTTT
23362192 TTCTCTTTTC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.51
Consensus pattern (61 bp):
GCACATGTTATGGAAATTTTTCATATTCTATAATTTTCTCTTTAGATCTAGTATTTAGTTT
Found at i:23362467 original size:57 final size:57
Alignment explanation
Indices: 23362397--23362504 Score: 198
Period size: 57 Copynumber: 1.9 Consensus size: 57
23362387 AGATCCATGA
*
23362397 GCAACTAATCCTCCTGTGGGGGATTAGCGAGTAGAGGTATGATTAATTAACTATTTT
1 GCAACTAATCCTCCTGTGGGGGATTAGCAAGTAGAGGTATGATTAATTAACTATTTT
*
23362454 GCAACTAATCCTCCTGTGGGGGATTAGCAAGTGGAGGTATGATTAATTAAC
1 GCAACTAATCCTCCTGTGGGGGATTAGCAAGTAGAGGTATGATTAATTAAC
23362505 ATAAAACTCT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (57 bp):
GCAACTAATCCTCCTGTGGGGGATTAGCAAGTAGAGGTATGATTAATTAACTATTTT
Found at i:23366856 original size:341 final size:341
Alignment explanation
Indices: 23366229--23366908 Score: 1040
Period size: 341 Copynumber: 2.0 Consensus size: 341
23366219 ACTCCTATTC
* * * * *
23366229 TATTGGTGTGAAGTCTATTCTCTTTAACCATAAGGTGTGATCTTATAGGTCCTGTAACATTGGTA
1 TATTGGTGTAAAATCTATTCGCTTTAACCATAAGGTGTGACCTTATAGGTCCTATAACATTGGTA
* * *
23366294 GTAATACTAGAACATTTCTAATGTTTCAAGCAATGCGTGGCGTCTAGCAATACATCATTGCTACC
66 GTAAAACTAGAACATTTCTAATGTTACAAGCAATGAGTGGCGTCTAGCAATACATCATTGCTACC
** *
23366359 CAAGTTACAAGAAGTTGTGATTCGACATAACCTTTCTCTAATAAATATTTCATTTTATTATATCA
131 CAAGTTACAAGAAGTCATGATTCGACATAACCTTTCTCTAATAAATATTTCATTGTATTATATCA
* *
23366424 TTTTATCATTTATATCTAAATTGGACACAAGTCATGGTATAGTCACACTTGTATAGTCCAATCTC
196 TTTTATCATTTATATCTAAATTGGACACAAGTCATAGCATAGTCACACTTGTATAGTCCAATCTC
* *
23366489 ATATTTCTTGATATTCTGAATAGACTACAATAAACAAATAAGTGTGATATCTCATATCAACTTAT
261 ATATTTCTTAATATTCTGAATAGACTACAATAAAAAAATAAGTGTGATATCTCATATCAACTTAT
23366554 TTGAGCATGACCATTA
326 TTGAGCATGACCATTA
* * * * * **
23366570 TATTGGTGTAAAATCTGTTCGCTTTAACCATAGGGTGTGGCCTTGTAGGTTCTTATAATGTTGGT
1 TATTGGTGTAAAATCTATTCGCTTTAACCATAAGGTGTGACCTTATAGG-TCCTATAACATTGGT
*
23366635 AGTAAAACTAGAACATTTCTAATGTTACAAGCAATGAGTGGCGTCTAGCAATGCATCATTGCTAC
65 AGTAAAACTAGAACATTTCTAATGTTACAAGCAATGAGTGGCGTCTAGCAATACATCATTGCTAC
* * * * *
23366700 TCAAGTTACAAGAAGTCATGATTTGGCATAACCTTTCTGTGATAAACT-TTTCA-TGTATTATAT
130 CCAAGTTACAAGAAGTCATGATTCGACATAACCTTTCTCTAATAAA-TATTTCATTGTATTATAT
* *
23366763 CATTTTATCCTTTATATCTAAATTGGACACAAGTCATAGCATAGTCACCCTTGTATAGTCCAATC
194 CATTTTATCATTTATATCTAAATTGGACACAAGTCATAGCATAGTCACACTTGTATAGTCCAATC
* *
23366828 TCATATTTCTTAATATTCTGAGTAGACTATAATAAAAAAATAAGTGTGATATCTCATATCAACTT
259 TCATATTTCTTAATATTCTGAATAGACTACAATAAAAAAATAAGTGTGATATCTCATATCAACTT
23366893 ATTTGAGCATGACCAT
324 ATTTGAGCATGACCAT
23366909 GCATTTCTAG
Statistics
Matches: 305, Mismatches: 32, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
341 188 0.62
342 116 0.38
343 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (341 bp):
TATTGGTGTAAAATCTATTCGCTTTAACCATAAGGTGTGACCTTATAGGTCCTATAACATTGGTA
GTAAAACTAGAACATTTCTAATGTTACAAGCAATGAGTGGCGTCTAGCAATACATCATTGCTACC
CAAGTTACAAGAAGTCATGATTCGACATAACCTTTCTCTAATAAATATTTCATTGTATTATATCA
TTTTATCATTTATATCTAAATTGGACACAAGTCATAGCATAGTCACACTTGTATAGTCCAATCTC
ATATTTCTTAATATTCTGAATAGACTACAATAAAAAAATAAGTGTGATATCTCATATCAACTTAT
TTGAGCATGACCATTA
Done.