Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 84 of 187
Found at i:24512564 original size:29 final size:30
Alignment explanation
Indices: 24512449--24512564 Score: 125
Period size: 29 Copynumber: 4.0 Consensus size: 30
24512439 CATAATTTCA
*
24512449 AGAAAA-TTTAGGGGTCAAAATGTAATTTC
1 AGAAAAGTTTAGGGGTCAAAATGTAATTTT
* *
24512478 A-AAAAGTTAATGGGTCAAAATGTAA-TTT
1 AGAAAAGTTTAGGGGTCAAAATGTAATTTT
* * * *
24512506 AAAAAAGTTTAGGGCTTAAAATATAATTTT
1 AGAAAAGTTTAGGGGTCAAAATGTAATTTT
24512536 AGGAAAA-TTTAGGGGTC-AAATGTAATTTT
1 A-GAAAAGTTTAGGGGTCAAAATGTAATTTT
24512565 TTATTTTTGT
Statistics
Matches: 71, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
28 7 0.10
29 48 0.68
30 12 0.17
31 4 0.06
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (30 bp):
AGAAAAGTTTAGGGGTCAAAATGTAATTTT
Found at i:24513184 original size:72 final size:72
Alignment explanation
Indices: 24512738--24513999 Score: 1467
Period size: 72 Copynumber: 16.8 Consensus size: 72
24512728 TGAAAAATAG
* * * * *
24512738 AAATTGAAAATACCTCGGCGTGTGGCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 AAATTAAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGA-TTT
** *
24512803 TGAAAA-ACAG
62 AAAAAAGACAT
* ** * * *
24512813 AAATTTAAAAGAAATACCTCAGCATGGTCCGATGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AAA-TT--AA-AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGA--
* *
24512878 TTTTTTGAAAAAAAACAG
59 ---TTT-AAAAAAGACAT
* *
24512896 AAATTTAAAAGAAATACCTTAGCGTGACCCGAGGCTCAACTCACATCTCGTATTATGAGTTGATT
1 AAA-TT--AA-AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATT
24512961 TAAAAAAGACAT
61 TAAAAAAGACAT
*
24512973 AAATTAAAAATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTG
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGA--TTT-
* *
24513038 AAAAAAAACAG
62 AAAAAAGACAT
*
24513049 AAATTAAAAATACCTCAACGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTAAA
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTAAA
24513114 AAAGACAT
65 AAAGACAT
* *
24513122 AAATTTAAAATACCTCAGCGTGACCCGAGGCTCCACTCACCTCTGTATTATGAGTTGATTTAAAA
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTAAAA
24513187 AAGACAT
66 AAGACAT
* *
24513194 AAATTTAAAATACCTCAGCGTGACCCGAGGCTCCACTCACCTCTGTATTATGAGTTGATTTAAAA
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTAAAA
24513259 AAGACAT
66 AAGACAT
* *
24513266 AAATTTAAAATACCTCAGCGTGACCCGAGGCTCCACTCACCTCTGTATTATGAGTTGATTTAAAA
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTAAAA
24513331 AAGACAT
66 AAGACAT
*
24513338 AAATTTAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTAA
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA--TTT--
**
24513403 AAAAAAAGACCG
62 -AAAAAAGACAT
24513415 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTAAAA
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTT--AA
24513480 AAAAGACAT
64 AAAAGACAT
24513489 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTT
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA------T
*
24513554 TTTAAAAAGACAT
60 TTAAAAAAGACAT
*
24513567 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTAC
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA--TTTAA
24513632 AAAAGACAT
64 AAAAGACAT
*
24513641 AAATTAAAAATACCTCAGCGTGACTCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTAAA
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTT-AA
**
24513706 AAAAGACCG
64 AAAAGACAT
** *
24513715 AAATTAAAAATACCTCAGCGTGACCCGAGGCTTGACTCACCTCTGTATTATGAGTTGATTT-TAA
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTAAAA
24513779 AA-A-A-
66 AAGACAT
*** *
24513783 AAA-CCGAAATACCTCAGCGTGATCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTT
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGA------
* *
24513847 TTTTAAAAAGACAG
59 TTTAAAAAAGACAT
* * * **
24513861 AAATTAAAAATACCTCAGAGTGACCCGAGGCTCAACTCACCTTTCGTACTATGAGTTGATTT-TT
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTAAA
* *
24513925 GAAGAACAG
65 AAAG-ACAT
* * * *
24513934 AAATTTAAAAGAAATACCTCGGCATAACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATT
1 AAA-TT--AA-AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATT
24513999 T
61 T
24514000 TTTTTTGAAA
Statistics
Matches: 1073, Mismatches: 72, Indels: 82
0.87 0.06 0.07
Matches are distributed among these distances:
67 34 0.03
68 17 0.02
70 1 0.00
71 4 0.00
72 232 0.22
73 116 0.11
74 216 0.20
75 13 0.01
76 73 0.07
77 163 0.15
78 75 0.07
79 59 0.05
80 3 0.00
81 4 0.00
82 4 0.00
83 59 0.05
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (72 bp):
AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTAAAA
AAGACAT
Found at i:24513283 original size:144 final size:146
Alignment explanation
Indices: 24512738--24514000 Score: 1501
Period size: 149 Copynumber: 8.4 Consensus size: 146
24512728 TGAAAAATAG
* * * * * *
24512738 AAATTGAAAATACCTCGGCGTGTGGCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 AAATTAAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTT
** * * ** * * *
24512803 TGAAAA-ACAGAAATTTAAAAGAAATACCTCAGCATGGTCCGATGCTCAACTCACCTCTCGCAAT
64 AAAAAAGACATAAA-TT--AA-AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATT
* *
24512867 ATGAGTTGATTTTTTTTGAAAAAAAACAG
124 ATGAGTTGA-----TTT-AAAAAAGACAT
* *
24512896 AAATTTAAAAGAAATACCTTAGCGTGACCCGAGGCTCAACTCACATCTCGTATTATGAGTTGA-T
1 AAA-TT--AA-AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATT
*
24512960 TTAAAAAAGACATAAATTAAAAATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTCGTATTAT
62 TTAAAAAAGACATAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTAT
* *
24513025 GAGTTGATTTTTGAAAAAAAACAG
126 GAGTTGA--TTT-AAAAAAGACAT
*
24513049 AAATTAAAAATACCTCAACGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGA-TTTAA
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTAA
* *
24513113 AAAAGACATAAATTTAAAATACCTCAGCGTGACCCGAGGCTCCACTCACCTCTGTATTATGAGTT
66 AAAAGACATAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
24513178 GATTTAAAAAAGACAT
131 GATTTAAAAAAGACAT
* *
24513194 AAATTTAAAATACCTCAGCGTGACCCGAGGCTCCACTCACCTCT-GTATTATGAGTTGA-TTTAA
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTAA
* *
24513257 AAAAGACATAAATTTAAAATACCTCAGCGTGACCCGAGGCTCCACTCACCTCTGTATTATGAGTT
66 AAAAGACATAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
24513322 GATTTAAAAAAGACAT
131 GATTTAAAAAAGACAT
*
24513338 AAATTTAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTA
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGA-TTTT-
**
24513402 AAAAAAAAGACCGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATG
64 --AAAAAAGACATAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATG
24513467 AGTTGATTTAAAAAAAAGACAT
127 AGTTGATTT--AAAAAAGACAT
24513489 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTT
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGA-----T
*
24513553 TTTTAAAAAGACATAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTAT
61 TTTAAAAAAGACATAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTAT
*
24513618 GAGTTGATTTTTACAAAAGACAT
126 GAGTTGA--TTTAAAAAAGACAT
*
24513641 AAATTAAAAATACCTCAGCGTGACTCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTAA
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTT-A
** **
24513705 AAAAAGACCGAAATTAAAAATACCTCAGCGTGACCCGAGGCTTGACTCACCTCTGTATTATGAGT
65 AAAAAGACATAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGT
*
24513770 TGATTT-TAAAA-A-A-
130 TGATTTAAAAAAGACAT
*** *
24513783 AAA-CCGAAATACCTCAGCGTGATCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTT
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGA-----T
* * * * *
24513847 TTTTAAAAAGACAGAAATTAAAAATACCTCAGAGTGACCCGAGGCTCAACTCACCTTTCGTACTA
61 TTTAAAAAAGACATAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTA
*** *
24513912 TGAGTTGATTT-TTGAAGAACAG
125 TGAGTTGATTTAAAAAAG-ACAT
* * * *
24513934 AAATTTAAAAGAAATACCTCGGCATAACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATT
1 AAA-TT--AA-AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATT
24513999 TT
62 TT
24514001 TTTTTGAAAA
Statistics
Matches: 1002, Mismatches: 68, Indels: 77
0.87 0.06 0.07
Matches are distributed among these distances:
141 35 0.03
142 17 0.02
143 1 0.00
144 158 0.16
145 54 0.05
146 58 0.06
147 27 0.03
148 78 0.08
149 173 0.17
150 3 0.00
151 75 0.07
152 135 0.13
153 20 0.02
154 3 0.00
155 5 0.00
156 92 0.09
157 2 0.00
158 3 0.00
159 11 0.01
160 41 0.04
161 1 0.00
162 10 0.01
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (146 bp):
AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTAA
AAAAGACATAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
GATTTAAAAAAGACAT
Found at i:24514000 original size:156 final size:158
Alignment explanation
Indices: 24513788--24514079 Score: 412
Period size: 156 Copynumber: 1.8 Consensus size: 158
24513778 AAAAAAAACC
* * * *
24513788 GAAATACCTCAGCGTGATCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTTTTTTAA
1 GAAATACCTCAGCATAACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTTTTTAA
* * * *
24513853 AAAGACAGAAA-TT-AA-AAATACCTCAGAGTG-ACCCGAGGCTCAACTCACCTTTCGTACTATG
65 AAA-ACAGAAATTTAAAGAAATACCTCAGAATGAACCCGAGGCTCAACTCACCTCTCGCAATATG
24513914 AGTTGATTTTTGAAGAACAGAAATTTAAAA
129 AGTTGATTTTTGAAGAACAGAAATTTAAAA
* *
24513944 GAAATACCTCGGCATAACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTTGAA
1 GAAATACCTCAGCATAACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTTAAA
* *
24514009 AAACAGAAATTTAAAAGAAATACCTTAGAATGCAACTCGAGGCTCAACTCACCTCTCGCAATATG
66 AAACAGAAATTT-AAAGAAATACCTCAGAATG-AACCCGAGGCTCAACTCACCTCTCGCAATATG
24514074 AGTTGA
129 AGTTGA
24514080 CTTTCGTAAA
Statistics
Matches: 118, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
154 7 0.06
155 15 0.13
156 48 0.41
157 2 0.02
158 13 0.11
160 33 0.28
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (158 bp):
GAAATACCTCAGCATAACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTTAAA
AAACAGAAATTTAAAGAAATACCTCAGAATGAACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGAAGAACAGAAATTTAAAA
Found at i:24514997 original size:9 final size:9
Alignment explanation
Indices: 24514985--24515023 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
24514975 TTTCTTTTCC
24514985 TGTTTTTTT
1 TGTTTTTTT
24514994 TGTTTTTTT
1 TGTTTTTTT
*
24515003 TTTCTTGTTTT
1 TGT-TT-TTTT
24515014 TGTTTTTTT
1 TGTTTTTTT
24515023 T
1 T
24515024 AGGCATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 16 0.62
10 4 0.15
11 6 0.23
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.87
Consensus pattern (9 bp):
TGTTTTTTT
Found at i:24515000 original size:23 final size:23
Alignment explanation
Indices: 24514969--24515023 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
24514959 TGATTATTCT
24514969 TTTTCTTTTCTTTTCCTGTTTTT-
1 TTTT-TTTTCTTTTCCTGTTTTTG
* *
24514992 TTTGTTTTTTTTTTCTTGTTTTTG
1 TTT-TTTTTCTTTTCCTGTTTTTG
24515016 TTTTTTTT
1 TTTTTTTT
24515024 AGGCATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 24 0.86
24 4 0.14
ACGTcount: A:0.00, C:0.09, G:0.07, T:0.84
Consensus pattern (23 bp):
TTTTTTTTCTTTTCCTGTTTTTG
Found at i:24515002 original size:20 final size:20
Alignment explanation
Indices: 24514979--24515022 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
24514969 TTTTCTTTTC
* *
24514979 TTTTCCTGTTTTTTTTGTTT
1 TTTTCCTCTTGTTTTTGTTT
**
24514999 TTTTTTTCTTGTTTTTGTTT
1 TTTTCCTCTTGTTTTTGTTT
24515019 TTTT
1 TTTT
24515023 TAGGCATAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.00, C:0.07, G:0.09, T:0.84
Consensus pattern (20 bp):
TTTTCCTCTTGTTTTTGTTT
Found at i:24515004 original size:14 final size:15
Alignment explanation
Indices: 24514985--24515023 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
24514975 TTTCTTTTCC
24514985 TGTTTTTTTTGTTTT
1 TGTTTTTTTTGTTTT
*
24515000 T-TTTTTCTTGTTTT
1 TGTTTTTTTTGTTTT
24515014 TGTTTTTTTT
1 TGTTTTTTTT
24515024 AGGCATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.87
Consensus pattern (15 bp):
TGTTTTTTTTGTTTT
Found at i:24526112 original size:39 final size:38
Alignment explanation
Indices: 24526030--24526117 Score: 101
Period size: 38 Copynumber: 2.3 Consensus size: 38
24526020 TTGAAAACAC
* *
24526030 GAATTTTTTTAAAAAAAATACAAGAATTTTAGACACAT
1 GAATTTTTTTTAAAAAAATACAAGAATTTTAAACACAT
24526068 GAATTTTTTTTAAAAAAA-ACGAA-AATTTTGAAACACGA-
1 GAATTTTTTTTAAAAAAATAC-AAGAATTTT-AAACAC-AT
24526106 GAAATTTTTTTT
1 G-AATTTTTTTT
24526118 TTGAAAAGAC
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
37 8 0.18
38 25 0.57
39 11 0.25
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.38
Consensus pattern (38 bp):
GAATTTTTTTTAAAAAAATACAAGAATTTTAAACACAT
Found at i:24526463 original size:28 final size:28
Alignment explanation
Indices: 24526415--24526472 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
24526405 TGCCTTGTTT
*
24526415 ATTGAAATTATTTAAATTTAAAATA-AA
1 ATTGAAATTAATTAAATTTAAAATATAA
24526442 ATTGAAATTAAATTAAATTTAAAATATAA
1 ATTGAAATT-AATTAAATTTAAAATATAA
24526471 AT
1 AT
24526473 ACAAAAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
27 9 0.32
28 15 0.54
29 4 0.14
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (28 bp):
ATTGAAATTAATTAAATTTAAAATATAA
Found at i:24526653 original size:12 final size:11
Alignment explanation
Indices: 24526620--24526650 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
24526610 AATTGAACCC
24526620 TTTTTCCTTCT
1 TTTTTCCTTCT
*
24526631 TTTTTTCTTCT
1 TTTTTCCTTCT
24526642 TTTTTCCTT
1 TTTTTCCTT
24526651 TCTCTCTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTCCTTCT
Found at i:24526666 original size:22 final size:22
Alignment explanation
Indices: 24526620--24526667 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
24526610 AATTGAACCC
*
24526620 TTTTTCCTTCTTTTTTTCTTCT
1 TTTTTCCTTCTTCTTTTCTTCT
24526642 TTTTTCCTTTCTCTCTTTT-TT-T
1 TTTTTCC-TTCT-TCTTTTCTTCT
24526664 TTTT
1 TTTT
24526668 GCTGGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 12 0.52
23 6 0.26
24 5 0.22
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTTTCCTTCTTCTTTTCTTCT
Found at i:24527143 original size:20 final size:20
Alignment explanation
Indices: 24527102--24527142 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
24527092 CTCCCGACGC
*
24527102 TTCCCTTCTCTTCCTCTCTT
1 TTCCCTCCTCTTCCTCTCTT
*
24527122 TTCCCTCCTCTT-TTCTCTT
1 TTCCCTCCTCTTCCTCTCTT
24527141 TT
1 TT
24527143 TTTCGAAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (20 bp):
TTCCCTCCTCTTCCTCTCTT
Found at i:24527423 original size:30 final size:29
Alignment explanation
Indices: 24527389--24527476 Score: 79
Period size: 30 Copynumber: 3.0 Consensus size: 29
24527379 GCCAAAACAT
*
24527389 AATTTCAAGAAAATTTAGGGGTCAAAATGC
1 AATTT-AAGAAAATTTAGGGGTTAAAATGC
* * * **
24527419 AATTTAA-AAATTTTTAGGGCTTAAAGTAT
1 AATTTAAGAAA-ATTTAGGGGTTAAAATGC
*
24527448 AATTTTAGGAAAATTTAGGGGTTAAAATG
1 AA-TTTAAGAAAATTTAGGGGTTAAAATG
24527477 TGAATTTTTT
Statistics
Matches: 44, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
28 3 0.07
29 16 0.36
30 22 0.50
31 3 0.07
ACGTcount: A:0.42, C:0.05, G:0.19, T:0.34
Consensus pattern (29 bp):
AATTTAAGAAAATTTAGGGGTTAAAATGC
Found at i:24534885 original size:6 final size:6
Alignment explanation
Indices: 24534874--24534902 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
24534864 GTTCTCCCCA
24534874 CCCTCT CCCTCT CCCTCT CCCTCT CCCTC
1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTC
24534903 CCAACATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (6 bp):
CCCTCT
Found at i:24537470 original size:16 final size:16
Alignment explanation
Indices: 24537449--24537490 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
24537439 TTATTAAATT
*
24537449 ATATATTTTAATTATA
1 ATATATTTTAATAATA
24537465 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
24537480 AT-TATGTTTAA
1 ATATAT-TTTAA
24537491 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:24537475 original size:15 final size:15
Alignment explanation
Indices: 24537440--24537481 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
24537430 TTAAGAATTT
*
24537440 TATTAAATTAT-ATA
1 TATTTAATTATAATA
24537454 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
24537468 TATTTAATAATAAT
1 TATTTAATTATAAT
24537482 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:24537625 original size:157 final size:157
Alignment explanation
Indices: 24537424--24537740 Score: 555
Period size: 157 Copynumber: 2.0 Consensus size: 157
24537414 ATAAGAATAT
*
24537424 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
* * *
24537489 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
24537554 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
24537581 TAATTA-TAAGAATTTTATTAAATTATATATTATTAATTAAAATATATTTAATAATAATTATGTT
1 TAATTATTAAGAATTTTATTAAATTATATATT-TTAATTAAAATATATTTAATAATAATTATGTT
24537645 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
65 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
* *
24537710 ATAATCATTTACCAAAACAATTTTATGC
130 ATAATAATTTACCAAAACAAATTTATGC
24537738 TAA
1 TAA
24537741 GGGTATTCTA
Statistics
Matches: 152, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
156 25 0.16
157 127 0.84
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:24537871 original size:17 final size:16
Alignment explanation
Indices: 24537837--24537889 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
24537827 GATTAGCTAT
24537837 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
24537853 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
24537870 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
24537886 TACA
1 TACA
24537890 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:24542925 original size:6 final size:6
Alignment explanation
Indices: 24542909--24542950 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
24542899 CTGTGAGCTA
* * *
24542909 CTGTT- CTGTTG CTGTTG CTGCTG TTGCTG CTGTTG CTGTTG C
1 CTGTTG CTGTTG CTGTTG CTGTTG CTGTTG CTGTTG CTGTTG C
24542951 AACTGAGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.00, C:0.21, G:0.31, T:0.48
Consensus pattern (6 bp):
CTGTTG
Found at i:24542932 original size:9 final size:9
Alignment explanation
Indices: 24542918--24542946 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
24542908 ACTGTTCTGT
24542918 TGCTGTTGC
1 TGCTGTTGC
24542927 TGCTGTTGC
1 TGCTGTTGC
24542936 TGCTGTTGC
1 TGCTGTTGC
24542945 TG
1 TG
24542947 TTGCAACTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.00, C:0.21, G:0.34, T:0.45
Consensus pattern (9 bp):
TGCTGTTGC
Found at i:24542932 original size:15 final size:15
Alignment explanation
Indices: 24542909--24542950 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
24542899 CTGTGAGCTA
24542909 CTGTT-CTGTTGCTG
1 CTGTTGCTGTTGCTG
* *
24542923 TTGCTGCTGTTGCTG
1 CTGTTGCTGTTGCTG
24542938 CTGTTGCTGTTGC
1 CTGTTGCTGTTGC
24542951 AACTGAGCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 3 0.13
15 20 0.87
ACGTcount: A:0.00, C:0.21, G:0.31, T:0.48
Consensus pattern (15 bp):
CTGTTGCTGTTGCTG
Found at i:24543945 original size:14 final size:14
Alignment explanation
Indices: 24543904--24543950 Score: 71
Period size: 14 Copynumber: 3.4 Consensus size: 14
24543894 AAAGAGAAGC
24543904 ATCAAATGAAAGAG
1 ATCAAATGAAAGAG
24543918 ATC-AAT-ATAAGAG
1 ATCAAATGA-AAGAG
24543931 ATCAAATGAAAGAG
1 ATCAAATGAAAGAG
24543945 ATCAAA
1 ATCAAA
24543951 CAAACCTACC
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.03
13 11 0.37
14 17 0.57
15 1 0.03
ACGTcount: A:0.57, C:0.09, G:0.17, T:0.17
Consensus pattern (14 bp):
ATCAAATGAAAGAG
Found at i:24544731 original size:3 final size:3
Alignment explanation
Indices: 24544725--24544759 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
24544715 CTGCGGCTGC
*
24544725 TGT TGT TGC TGT TGT TGT TGT TGT TGT TGT TGT TG
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TG
24544760 CTGCTGCTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.03, G:0.34, T:0.63
Consensus pattern (3 bp):
TGT
Found at i:24544764 original size:3 final size:3
Alignment explanation
Indices: 24544758--24545620 Score: 1690
Period size: 3 Copynumber: 287.7 Consensus size: 3
24544748 TTGTTGTTGT
* *
24544758 TGC TGC TGC TGC TGT TGC TGT TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24544806 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24544854 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24544902 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24544950 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24544998 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24545046 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24545094 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24545142 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24545190 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24545238 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24545286 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24545334 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24545382 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24545430 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24545478 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
24545526 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
* *
24545574 TGC TGC TGC TGC TGC TGC TGC TGT TGC TGC TGC TGT TGC TGC TGC TG
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TG
24545621 TTGTTGCTGA
Statistics
Matches: 852, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
3 852 1.00
ACGTcount: A:0.00, C:0.33, G:0.33, T:0.34
Consensus pattern (3 bp):
TGC
Found at i:24550105 original size:17 final size:17
Alignment explanation
Indices: 24550083--24550143 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
24550073 ATTGAATCAC
24550083 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
24550100 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
*
24550120 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
24550137 TACATAA
1 TACATAA
24550144 GTCTTGAAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 19 0.59
20 13 0.41
ACGTcount: A:0.51, C:0.13, G:0.03, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:24550116 original size:37 final size:37
Alignment explanation
Indices: 24550074--24550148 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
24550064 ATTATCCAAA
24550074 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
24550111 TTGAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
24550148 T
1 T
24550149 GAAATTAACA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:24550162 original size:37 final size:37
Alignment explanation
Indices: 24550074--24550165 Score: 125
Period size: 37 Copynumber: 2.5 Consensus size: 37
24550064 ATTATCCAAA
*
24550074 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATAACTACATAATTAAAAACATTACATAAGTCT
* *
24550111 TTGAATCACTACATAATTAAAAATATTACATAAGTC-
1 TTGAATAACTACATAATTAAAAACATTACATAAGTCT
24550147 TTGAAATTAAC-ACATAATT
1 TTG-AA-TAACTACATAATT
24550166 GAAATATAAG
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
36 3 0.06
37 45 0.88
38 3 0.06
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.34
Consensus pattern (37 bp):
TTGAATAACTACATAATTAAAAACATTACATAAGTCT
Found at i:24550290 original size:18 final size:18
Alignment explanation
Indices: 24550258--24550321 Score: 70
Period size: 18 Copynumber: 3.9 Consensus size: 18
24550248 AACATGTGTC
*
24550258 TATTTA-TATATTATTTT
1 TATTTATTAAATTATTTT
24550275 TATTTATTAAATTATTTT
1 TATTTATTAAATTATTTT
24550293 TA--T-TT---TTATTTT
1 TATTTATTAAATTATTTT
24550305 TATTTATTAAATTATTT
1 TATTTATTAAATTATTT
24550322 GTAATTTTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 13
0.74 0.02 0.25
Matches are distributed among these distances:
12 9 0.23
14 1 0.03
15 4 0.10
16 1 0.03
17 6 0.15
18 18 0.46
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TATTTATTAAATTATTTT
Found at i:24550298 original size:5 final size:6
Alignment explanation
Indices: 24550268--24550309 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
24550258 TATTTATATA
**
24550268 TTATTT TTATTT ATTA-AA TTATTT TTATTT TTATTT TTATTT
1 TTATTT TTATTT -TTATTT TTATTT TTATTT TTATTT TTATTT
24550310 ATTAAATTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
5 3 0.10
6 24 0.80
7 3 0.10
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (6 bp):
TTATTT
Found at i:24551936 original size:64 final size:64
Alignment explanation
Indices: 24551854--24551973 Score: 168
Period size: 64 Copynumber: 1.9 Consensus size: 64
24551844 CGAGTATCCC
* * ** * * *
24551854 GATCGATATTGATTCTGCATGTGTTGTGGATATACTGCAGCTCTTTTTGAGCGTCCTGTTATAT
1 GATCGATATTGATCCTGCATGTATTGCAGACATACCGCAGCTCTTTATGAGCGTCCTGTTATAT
*
24551918 GATCGGTATTGATCCTGCATGTATTGCAGACATACCGCAGCTCTTTATGAGCGTCC
1 GATCGATATTGATCCTGCATGTATTGCAGACATACCGCAGCTCTTTATGAGCGTCC
24551974 CGATATAGGC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
64 48 1.00
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (64 bp):
GATCGATATTGATCCTGCATGTATTGCAGACATACCGCAGCTCTTTATGAGCGTCCTGTTATAT
Found at i:24560542 original size:26 final size:26
Alignment explanation
Indices: 24560505--24560575 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
24560495 ACACATCGCA
*
24560505 GCTCTT-ATGAGCGTCCCGATTAAAG
1 GCTCTTCATGAGCTTCCCGATTAAAG
* *
24560530 GCTCTTCATGAGCTTCCTGATTAATG
1 GCTCTTCATGAGCTTCCCGATTAAAG
* *
24560556 GCTTTTC-GGAGCTTCCCGAT
1 GCTCTTCATGAGCTTCCCGAT
24560576 ATGACTCGCT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 17 0.44
26 22 0.56
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (26 bp):
GCTCTTCATGAGCTTCCCGATTAAAG
Found at i:24560689 original size:73 final size:73
Alignment explanation
Indices: 24560529--24560692 Score: 163
Period size: 73 Copynumber: 2.2 Consensus size: 73
24560519 CCCGATTAAA
* ** *
24560529 GGCTCTTCATGAGCTTCCTGATTAATGGCTTTTCGGAGCTTCCCGATATGACTCGCTTGAACTTC
1 GGCTCTT-ATGAGCTTCCTGATTAATAGCTTTTCAAAGCTACCCGATATGACTCGCTTGAACTTC
24560594 CCAATATAT
65 CCAATATAT
* * * * * *
24560603 GGCTATCT-GGAGCTTCCTGATTAATAG-TTCTTCAAAGCTACCTGTTATTGGCTCGCTTGAGCT
1 GGCTCT-TATGAGCTTCCTGATTAATAGCTT-TTCAAAGCTACCCGATA-TGACTCGCTTGAACT
**
24560666 TCCTGA-ATAT
63 TCCCAATATAT
24560676 GGCTCTTATGAGCTTCC
1 GGCTCTTATGAGCTTCC
24560693 CGTTATACAG
Statistics
Matches: 72, Mismatches: 14, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
72 3 0.04
73 46 0.64
74 22 0.31
75 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (73 bp):
GGCTCTTATGAGCTTCCTGATTAATAGCTTTTCAAAGCTACCCGATATGACTCGCTTGAACTTCC
CAATATAT
Found at i:24560750 original size:25 final size:25
Alignment explanation
Indices: 24560646--24560750 Score: 97
Period size: 25 Copynumber: 4.3 Consensus size: 25
24560636 AAAGCTACCT
* * *
24560646 GTTAT-TGGCTCGCTTGAGCTTCCT
1 GTTATATGGCTCACATGAGCTTCCC
* **
24560670 G-AATATGGCTCTTATGAGCTTCCC
1 GTTATATGGCTCACATGAGCTTCCC
** * * *
24560694 GTTATACAGCCCAGATAAGCTTCCC
1 GTTATATGGCTCACATGAGCTTCCC
24560719 GTTATATGGCTCACATGAGCTTCCC
1 GTTATATGGCTCACATGAGCTTCCC
24560744 GTTATAT
1 GTTATAT
24560751 TGCTTAAGAG
Statistics
Matches: 62, Mismatches: 17, Indels: 3
0.76 0.21 0.04
Matches are distributed among these distances:
23 2 0.03
24 17 0.27
25 43 0.69
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (25 bp):
GTTATATGGCTCACATGAGCTTCCC
Found at i:24561989 original size:30 final size:30
Alignment explanation
Indices: 24561971--24562028 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
24561961 ACATACGAGG
24561971 GTGTCTCTTGGCCGTGTGAGACACACGGAC
1 GTGTCTCTTGGCCGTGTGAGACACACGGAC
*
24562001 GTGTCTCTTGGTCGTGTGAGACACACGG
1 GTGTCTCTTGGCCGTGTGAGACACACGG
24562029 CCTGACTACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.16, C:0.24, G:0.34, T:0.26
Consensus pattern (30 bp):
GTGTCTCTTGGCCGTGTGAGACACACGGAC
Found at i:24564921 original size:106 final size:106
Alignment explanation
Indices: 24564784--24564997 Score: 365
Period size: 106 Copynumber: 2.0 Consensus size: 106
24564774 ATTAAAGAAC
*
24564784 TTTTAGAACTTGTGCACATTAGAGAGGAAAAAAGAGTACGGTTAGAATGTAATATTTATATATTA
1 TTTTAGAACTTGTGCACATTAGAGAGGAAAAAAGAGTACGGGTAGAATGTAATATTTATATATTA
24564849 TTCACGTTTGTATATGTATATGCTAAATCCATGAAAGTGTT
66 TTCACGTTTGTATATGTATATGCTAAATCCATGAAAGTGTT
* * *
24564890 TTTTAGAATTTGTGCACATTAGAGAGGAAAAAAGAGTATGGGTAGAATGTAATATTTGTATATTA
1 TTTTAGAACTTGTGCACATTAGAGAGGAAAAAAGAGTACGGGTAGAATGTAATATTTATATATTA
* * *
24564955 TTCATGTTTGTATATGTATATGTTAAATCCATGGAAGTGTT
66 TTCACGTTTGTATATGTATATGCTAAATCCATGAAAGTGTT
24564996 TT
1 TT
24564998 GATTTAATCA
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
106 101 1.00
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.39
Consensus pattern (106 bp):
TTTTAGAACTTGTGCACATTAGAGAGGAAAAAAGAGTACGGGTAGAATGTAATATTTATATATTA
TTCACGTTTGTATATGTATATGCTAAATCCATGAAAGTGTT
Found at i:24567515 original size:96 final size:96
Alignment explanation
Indices: 24567394--24567626 Score: 306
Period size: 96 Copynumber: 2.4 Consensus size: 96
24567384 CGTGTTTATT
* *
24567394 GTTTTTTAAGAAAAAATCAATTAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATTAAAAATTA
1 GTTTTTTAAGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATT-AAAATTA
24567459 TTTA-AAAATCAGATAAGGGTTTAGAGTTAAG
65 TTTATAAAATCAGATAAGGGTTTAGAGTTAAG
* * * * *
24567490 GTTTTTTAAGGAAAAATCAAATAAATTATGGTTCAGGGTTACTTGAGTAAATTAATTATAATTTT
1 GTTTTTTAAGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAATTAT
** * * *
24567555 TTATAAAATTTGATTAGGGTTTAGTGTTTAG
66 TTATAAAATCAGATAAGGGTTTAGAGTTAAG
* * *
24567586 GGTTTTTAAGTAAAAACTCAAATAAATTAGGGTTTGGGGTT
1 GTTTTTTAAG-AAAAAATCAAATAAATTAGGGTTTAGGGTT
24567627 TAGGGTTACT
Statistics
Matches: 117, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
95 9 0.08
96 83 0.71
97 25 0.21
ACGTcount: A:0.38, C:0.03, G:0.19, T:0.40
Consensus pattern (96 bp):
GTTTTTTAAGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAATTAT
TTATAAAATCAGATAAGGGTTTAGAGTTAAG
Found at i:24568025 original size:126 final size:126
Alignment explanation
Indices: 24567659--24568073 Score: 643
Period size: 126 Copynumber: 3.3 Consensus size: 126
24567649 TTGTTAATTT
* * * * *
24567659 AAAGAAGCTCTCACGTGGACGCACTTTTACTACAGTAGCTCCTGAAAAAATAATTTCGAGTATAT
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
* *
24567724 GTTTTTGAGCAAATAGTGTCAAAAACGCTTTAAGCAATATGCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTG
* *
24567785 AAAGAAGCTCCCACGTGGATGCGCTTTTGCTACAGTAGCTCCT-AAAAAATAATTTTGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
* * * * *
24567849 GTTTCTCAGCAAATAGTGTAAAAAATGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTA
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTG
** * *
24567910 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTTTTGAACAAATAATTTCGAATAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
24567975 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTG
* *
24568036 AAAGAAGCTCTCACGTGAACGCGCTTTTGCTACAGTAG
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAG
24568074 TGTATGTTTG
Statistics
Matches: 261, Mismatches: 27, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
125 112 0.43
126 149 0.57
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (126 bp):
AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTG
Found at i:24570806 original size:21 final size:21
Alignment explanation
Indices: 24570782--24570822 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
24570772 CCAGCTTCTG
* * *
24570782 GCGGGGGTTGTGGTTGCTCCA
1 GCGGGGATTCTGGTTCCTCCA
24570803 GCGGGGATTCTGGTTCCTCC
1 GCGGGGATTCTGGTTCCTCC
24570823 GGTAGGGGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.05, C:0.24, G:0.41, T:0.29
Consensus pattern (21 bp):
GCGGGGATTCTGGTTCCTCCA
Found at i:24571052 original size:18 final size:18
Alignment explanation
Indices: 24571025--24571062 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
24571015 GAAAATGGAA
* *
24571025 ACATATAAGGGTTAGGAT
1 ACATAAAAGGGCTAGGAT
24571043 ACATAAAAGGGCTAGGAT
1 ACATAAAAGGGCTAGGAT
24571061 AC
1 AC
24571063 GCACCTGGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.11, G:0.26, T:0.21
Consensus pattern (18 bp):
ACATAAAAGGGCTAGGAT
Found at i:24572898 original size:11 final size:11
Alignment explanation
Indices: 24572884--24572925 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
24572874 TTTAAATAGA
24572884 AATTTGAGAGG
1 AATTTGAGAGG
24572895 AATTTGAGAGG
1 AATTTGAGAGG
24572906 AATTTGAGA-G
1 AATTTGAGAGG
*
24572916 AAATTGAGAG
1 AATTTGAGAG
24572926 AAATGATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
10 9 0.31
11 20 0.69
ACGTcount: A:0.40, C:0.00, G:0.33, T:0.26
Consensus pattern (11 bp):
AATTTGAGAGG
Found at i:24572924 original size:10 final size:10
Alignment explanation
Indices: 24572881--24572929 Score: 53
Period size: 11 Copynumber: 4.6 Consensus size: 10
24572871 TCTTTTAAAT
24572881 AGAAATTTGAG
1 AGAAA-TTGAG
*
24572892 AGGAATTTGAG
1 A-GAAATTGAG
*
24572903 AGGAATTTGAG
1 A-GAAATTGAG
24572914 AGAAATTGAG
1 AGAAATTGAG
24572924 AGAAAT
1 AGAAAT
24572930 GATTTAGTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
10 14 0.40
11 18 0.51
12 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.31, T:0.24
Consensus pattern (10 bp):
AGAAATTGAG
Found at i:24572924 original size:21 final size:22
Alignment explanation
Indices: 24572884--24572925 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
24572874 TTTAAATAGA
*
24572884 AATTTGAGAGGAATTTGAGAGG
1 AATTTGAGAGGAAATTGAGAGG
24572906 AATTTGAGA-GAAATTGAGAG
1 AATTTGAGAGGAAATTGAGAG
24572926 AAATGATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.40, C:0.00, G:0.33, T:0.26
Consensus pattern (22 bp):
AATTTGAGAGGAAATTGAGAGG
Found at i:24587762 original size:27 final size:27
Alignment explanation
Indices: 24587732--24587835 Score: 86
Period size: 27 Copynumber: 3.9 Consensus size: 27
24587722 GCGACAGTAA
*
24587732 CACTTCGATGCAAATCAGTGATAGTGG
1 CACTTCGATGCAAATCAGTGATTGTGG
* * * * *
24587759 CACTTTGGTGCAACTTAATGATTGTGG
1 CACTTCGATGCAAATCAGTGATTGTGG
24587786 CACTTC-AGTGCAACAT-AGTGATTGTGG
1 CACTTCGA-TGCAA-ATCAGTGATTGTGG
* * **
24587813 CTCTTCGAAGCATTTCAGTGATT
1 CACTTCGATGCAAATCAGTGATT
24587836 CTGCGCTTCG
Statistics
Matches: 59, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
26 1 0.02
27 56 0.95
28 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (27 bp):
CACTTCGATGCAAATCAGTGATTGTGG
Found at i:24589237 original size:24 final size:24
Alignment explanation
Indices: 24589210--24589320 Score: 75
Period size: 24 Copynumber: 4.6 Consensus size: 24
24589200 ATTCGAGAAT
24589210 GCTCATACGAGCACA-TAACGGGAA
1 GCTCATACGAGC-CAGTAACGGGAA
**
24589234 GCTCATGTGAGCCATGTAACGGGAA
1 GCTCATACGAGCCA-GTAACGGGAA
* * *
24589259 GCTCCAGA-GAGCCATTAATGGGAA
1 GCT-CATACGAGCCAGTAACGGGAA
* * * *
24589283 GC-CCTAGAGAGCCATTAATGGGAA
1 GCTCATA-CGAGCCAGTAACGGGAA
*
24589307 GCTCATATGAGCCA
1 GCTCATACGAGCCA
24589321 ATATCAAGAA
Statistics
Matches: 71, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
22 2 0.03
23 2 0.03
24 44 0.62
25 21 0.30
26 2 0.03
ACGTcount: A:0.32, C:0.23, G:0.28, T:0.17
Consensus pattern (24 bp):
GCTCATACGAGCCAGTAACGGGAA
Found at i:24589259 original size:25 final size:24
Alignment explanation
Indices: 24589225--24589445 Score: 119
Period size: 25 Copynumber: 8.9 Consensus size: 24
24589215 TACGAGCACA
*
24589225 TAACGGGAAGCTCATGTGAGCCAT
1 TAACGGGAAGCTCATGAGAGCCAT
24589249 GTAACGGGAAGCTCCA-GAGAGCCAT
1 -TAACGGGAAGCT-CATGAGAGCCAT
* *
24589274 TAATGGGAAGC-CCTAGAGAGCCAT
1 TAACGGGAAGCTCAT-GAGAGCCAT
* *
24589298 TAATGGGAAGCTCAT-ATGAGCCAA
1 TAACGGGAAGCTCATGA-GAGCCAT
* * * * * * *
24589322 TATCAAGAAAGTTCAAGAAAGCCAA
1 TAAC-GGGAAGCTCATGAGAGCCAT
*
24589347 TATCGGGAAGCTTCA-GAGAGCCAAT
1 TAACGGGAAGC-TCATGAGAGCC-AT
* *
24589372 TAATCGAGAAGCTCATGATAGAGCCTT
1 TAA-CGGGAAGCTCATG--AGAGCCAT
*
24589399 TAATCGGGAAGCTC-CGAAGAGCCAT
1 TAA-CGGGAAGCTCATG-AGAGCCAT
* * *
24589424 ATATCGGGACGCTCATAAGAGC
1 -TAACGGGAAGCTCATGAGAGC
24589446 TACGGTGTGT
Statistics
Matches: 153, Mismatches: 28, Indels: 30
0.73 0.13 0.14
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 48 0.31
25 69 0.45
26 14 0.09
27 14 0.09
28 6 0.04
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.19
Consensus pattern (24 bp):
TAACGGGAAGCTCATGAGAGCCAT
Found at i:24589511 original size:24 final size:24
Alignment explanation
Indices: 24589484--24589561 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
24589474 CACAACCAAT
*
24589484 CGGGATGCTCCGAAGAGCTATTAA
1 CGGGAAGCTCCGAAGAGCTATTAA
* *
24589508 CGGGAAGCT-CGCAAGAACCATATAA
1 CGGGAAGCTCCG-AAGAGCTAT-TAA
* *
24589533 CGGAAAGCTCACG-AGAGCTAATAA
1 CGGGAAGCTC-CGAAGAGCTATTAA
24589557 CGGGA
1 CGGGA
24589562 CGTATTTTTG
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
23 2 0.05
24 22 0.52
25 16 0.38
27 2 0.05
ACGTcount: A:0.36, C:0.22, G:0.28, T:0.14
Consensus pattern (24 bp):
CGGGAAGCTCCGAAGAGCTATTAA
Found at i:24603385 original size:12 final size:12
Alignment explanation
Indices: 24603354--24603385 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
24603344 CAGATTTGCA
24603354 TTTCTTT-TTAT
1 TTTCTTTATTAT
24603365 TTT-TTTATTAT
1 TTTCTTTATTAT
24603376 TTTCTTTATT
1 TTTCTTTATT
24603386 TTGTATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 3 0.16
11 10 0.53
12 6 0.32
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTCTTTATTAT
Found at i:24609670 original size:20 final size:20
Alignment explanation
Indices: 24609607--24609670 Score: 53
Period size: 20 Copynumber: 3.1 Consensus size: 20
24609597 AAGACTTGAG
24609607 AAATGTAAAAATC--TTATGAA
1 AAATGTAAAAATCAATT-T-AA
* *
24609627 AATATTTAAAAATTAA-TTATA
1 AA-ATGTAAAAATCAATTTA-A
24609648 AAATGTAAAAATCAATTTAA
1 AAATGTAAAAATCAATTTAA
24609668 AAA
1 AAA
24609671 GATTAAAAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
20 18 0.51
21 16 0.46
22 1 0.03
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (20 bp):
AAATGTAAAAATCAATTTAA
Found at i:24610910 original size:21 final size:21
Alignment explanation
Indices: 24610894--24610935 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
24610884 TTATAATATT
* *
24610894 TCATTATTGGGTGATAAAAAA
1 TCATAATTGGGTGATAATAAA
24610915 TCATAATTGGGTGATTAATAA
1 TCATAATTGGGTGA-TAATAA
24610936 TTTAGTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.40, C:0.05, G:0.19, T:0.36
Consensus pattern (21 bp):
TCATAATTGGGTGATAATAAA
Found at i:24611527 original size:22 final size:25
Alignment explanation
Indices: 24611502--24611546 Score: 69
Period size: 22 Copynumber: 1.9 Consensus size: 25
24611492 TTAGTAGATT
24611502 CTTAAAA-TCT-AAAAAA-AAAATC
1 CTTAAAATTCTGAAAAAAGAAAATC
24611524 CTTAAAATTCTGAAAAAAGAAAA
1 CTTAAAATTCTGAAAAAAGAAAA
24611547 AAACGTACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 3 0.15
24 6 0.30
25 4 0.20
ACGTcount: A:0.62, C:0.11, G:0.04, T:0.22
Consensus pattern (25 bp):
CTTAAAATTCTGAAAAAAGAAAATC
Found at i:24612851 original size:19 final size:19
Alignment explanation
Indices: 24612827--24612866 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
24612817 ATTTTTAAAA
24612827 AATTATATCTT-TATTTTTT
1 AATTAT-TCTTATATTTTTT
*
24612846 AATTATTTTTATATTTTTT
1 AATTATTCTTATATTTTTT
24612865 AA
1 AA
24612867 ATTTTATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 3 0.16
19 16 0.84
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (19 bp):
AATTATTCTTATATTTTTT
Found at i:24613087 original size:20 final size:20
Alignment explanation
Indices: 24613041--24613088 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
24613031 CTGTTTTTTA
*
24613041 TTTTATATATTATAATATAAT
1 TTTTA-ATATTATAACATAAT
*
24613062 TATTAATATTATGAACAT-AT
1 TTTTAATATTAT-AACATAAT
24613082 TTTTAAT
1 TTTTAAT
24613089 GGTTTGCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (20 bp):
TTTTAATATTATAACATAAT
Found at i:24617497 original size:19 final size:20
Alignment explanation
Indices: 24617470--24617512 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
24617460 GTCCACGTGT
*
24617470 AATTCATAAAAAT-TTAAAA
1 AATTAATAAAAATATTAAAA
*
24617489 AATTAATAAAAATATTTAAA
1 AATTAATAAAAATATTAAAA
24617509 AATT
1 AATT
24617513 CAACAAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
AATTAATAAAAATATTAAAA
Found at i:24632464 original size:23 final size:22
Alignment explanation
Indices: 24632421--24632465 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
24632411 TTGATCTCAT
*
24632421 TTTTTTAAAAAAAATCAAATTA
1 TTTTTTAAAAAAAATAAAATTA
**
24632443 TTTTTTAACGAAAATAATAATTA
1 TTTTTTAAAAAAAATAA-AATTA
24632466 AAACATTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.42
Consensus pattern (22 bp):
TTTTTTAAAAAAAATAAAATTA
Found at i:24635977 original size:33 final size:32
Alignment explanation
Indices: 24635892--24636081 Score: 100
Period size: 33 Copynumber: 5.7 Consensus size: 32
24635882 GTTTTCTTTG
** * *
24635892 TGCCATAGTCCAACTATGATCTTACA-CATGCAT
1 TGCCATAACCCAACTATGGTCTTACATCA-G-AA
* * * *
24635925 TACCATGACCCAACCATGGTCTTACATTC-GTAG
1 TGCCATAACCCAACTATGGTCTTACA-TCAG-AA
* * *
24635958 TGTCATAACTCAATTATGGTCTTATCATCAGAA
1 TGCCATAACCCAACTATGGTCTTA-CATCAGAA
*
24635991 TGCCATAACCCAACTATGGTCTTACTTAT-AAATA
1 TGCCATAACCCAACTATGGTCTTAC--ATCAGA-A
** *
24636025 CTGCCATAGTCCAACCATGGTCTTACATTCA-AA
1 -TGCCATAACCCAACTATGGTCTTACA-TCAGAA
**
24636058 TAGCCATAACCCAGTTATGGTCTT
1 T-GCCATAACCCAACTATGGTCTT
24636082 TTCATTAAAA
Statistics
Matches: 119, Mismatches: 27, Indels: 22
0.71 0.16 0.13
Matches are distributed among these distances:
32 2 0.02
33 85 0.71
34 8 0.07
35 24 0.20
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.31
Consensus pattern (32 bp):
TGCCATAACCCAACTATGGTCTTACATCAGAA
Found at i:24636039 original size:35 final size:34
Alignment explanation
Indices: 24635990--24636150 Score: 118
Period size: 35 Copynumber: 4.7 Consensus size: 34
24635980 TATCATCAGA
*
24635990 ATGCCATAACCCAACTATGGTCTTACTTATAAAT
1 ATGCCATAATCCAACTATGGTCTTACTTATAAAT
* * *
24636024 ACTGCCATAGTCCAACCATGGTCTTACATT-CAAAT
1 A-TGCCATAATCCAACTATGGTCTTAC-TTATAAAT
* **
24636059 A-GCCATAACCCAGTTATGGTCTT--TTCATTAAA-
1 ATGCCATAATCCAACTATGGTCTTACTT-A-TAAAT
* *
24636091 ATACCAT-ATCTCAGCTATGGTCTTACTTATAAAT
1 ATGCCATAATC-CAACTATGGTCTTACTTATAAAT
** *
24636125 ACTGCCATGGTCCAACCATGGTCTTA
1 A-TGCCATAATCCAACTATGGTCTTA
24636151 TCCGTCAATT
Statistics
Matches: 98, Mismatches: 17, Indels: 23
0.71 0.12 0.17
Matches are distributed among these distances:
30 2 0.02
32 3 0.03
33 40 0.41
34 3 0.03
35 46 0.47
36 4 0.04
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (34 bp):
ATGCCATAATCCAACTATGGTCTTACTTATAAAT
Found at i:24636066 original size:101 final size:101
Alignment explanation
Indices: 24635934--24636150 Score: 301
Period size: 101 Copynumber: 2.1 Consensus size: 101
24635924 TTACCATGAC
* * * * * *
24635934 CCAACCATGGTCTTACATTCGTAGTGTCATAACTCAATTATGGTCTTATCATCAGAATGCCATAA
1 CCAACCATGGTCTTACATTCGAAATGCCATAACCCAATTATGGTCTTATCATCAAAATACCATAA
24635999 CCCAACTATGGTCTTACTTATAAATACTGCCATAGT
66 CCCAACTATGGTCTTACTTATAAATACTGCCATAGT
* * *
24636035 CCAACCATGGTCTTACATTC-AAATAGCCATAACCCAGTTATGGTCTTTTCATTAAAATACCATA
1 CCAACCATGGTCTTACATTCGAAAT-GCCATAACCCAATTATGGTCTTATCATCAAAATACCATA
* * * *
24636099 TCTCAGCTATGGTCTTACTTATAAATACTGCCATGGT
65 ACCCAACTATGGTCTTACTTATAAATACTGCCATAGT
24636136 CCAACCATGGTCTTA
1 CCAACCATGGTCTTA
24636151 TCCGTCAATT
Statistics
Matches: 102, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 2 0.02
101 100 0.98
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (101 bp):
CCAACCATGGTCTTACATTCGAAATGCCATAACCCAATTATGGTCTTATCATCAAAATACCATAA
CCCAACTATGGTCTTACTTATAAATACTGCCATAGT
Found at i:24636098 original size:33 final size:34
Alignment explanation
Indices: 24635992--24636114 Score: 101
Period size: 33 Copynumber: 3.6 Consensus size: 34
24635982 TCATCAGAAT
*
24635992 GCCATAACCCAACTATGGTC-TTAC-TTATAAATA
1 GCCATAACCCAGCTATGGTCTTTACATTA-AAATA
** * * *
24636025 CTGCCATAGTCCAACCATGGTC-TTACATTCAAATA
1 --GCCATAACCCAGCTATGGTCTTTACATTAAAATA
* *
24636060 GCCATAACCCAGTTATGGTCTTTTCATTAAAATA
1 GCCATAACCCAGCTATGGTCTTTACATTAAAATA
* *
24636094 -CCATATCTCAGCTATGGTCTT
1 GCCATAACCCAGCTATGGTCTT
24636115 ACTTATAAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
33 33 0.46
34 11 0.15
35 26 0.36
36 2 0.03
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (34 bp):
GCCATAACCCAGCTATGGTCTTTACATTAAAATA
Found at i:24639963 original size:16 final size:17
Alignment explanation
Indices: 24639944--24639975 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
24639934 TTATTAAATC
24639944 ATATATTTAA-ATTAAA
1 ATATATTTAATATTAAA
24639960 ATATATTTAATATTAA
1 ATATATTTAATATTAA
24639976 TTATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTTAATATTAAA
Found at i:24640039 original size:66 final size:63
Alignment explanation
Indices: 24639968--24640180 Score: 194
Period size: 61 Copynumber: 3.4 Consensus size: 63
24639958 AAATATATTT
24639968 AATATTAATTATTTAA-AATTTTATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTA-TTAAGAATTTTA--TTA-AGTATCATATATTATGATTTGAGTAAATTCATATA
24640032 AG
62 AG
* * * * * * *
24640034 AATATTAATTATTAAGAATTTTATTAA--ATTATATATTTTAATTAT-ATTATATTTA-ATAAT
1 AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATT-TGAGTAAATTCATATAAG
* * * *
24640094 AATTATGTTATT-TT-A-TATTTTA--CAGTATCATATATTATGGTTTGAGTAAATTCATATAAG
1 AA-TAT-TAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
24640154 AATATTAATTATTAAGAATTTTATTAA
1 AATATTAATTATTAAGAATTTTATTAA
24640181 ATTATATATT
Statistics
Matches: 113, Mismatches: 21, Indels: 29
0.69 0.13 0.18
Matches are distributed among these distances:
57 1 0.01
58 5 0.04
59 30 0.27
60 14 0.12
61 31 0.27
62 5 0.04
63 2 0.02
64 3 0.03
65 4 0.04
66 18 0.16
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (63 bp):
AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:24640054 original size:120 final size:120
Alignment explanation
Indices: 24639930--24640222 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
24639920 AATTATTTTA
* * *
24639930 AATTTTATTAAATCATATATTTAAATTAAAATATATTTAATATTAATTAT-TTAAAATTT-TATT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTATATT
*
24639993 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
24640050 AATTTTATTAAATTATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
24640115 ACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
24640170 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
24640223 TAAATATGAT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 4 0.02
120 155 0.96
121 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:24640082 original size:18 final size:17
Alignment explanation
Indices: 24640051--24640085 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24640041 ATTATTAAGA
24640051 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
24640068 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
24640086 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:24640199 original size:18 final size:17
Alignment explanation
Indices: 24640171--24640205 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24640161 ATTATTAAGA
*
24640171 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24640188 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24640206 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24640319 original size:147 final size:149
Alignment explanation
Indices: 24640159--24640433 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
24640149 ATAAGAATAT
*
24640159 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
24640224 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
24640287 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
24640306 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
24640371 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
24640434 CAATAATCAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 91 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:24640346 original size:18 final size:17
Alignment explanation
Indices: 24640318--24640352 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24640308 ATTATTAAGA
*
24640318 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24640335 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24640353 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24640603 original size:45 final size:44
Alignment explanation
Indices: 24640514--24640608 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
24640504 TTACACCTCT
* *
24640514 ATTACATTCAACCAAACACAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACACAGATTTACTATTACACCTCTATTCC
** *
24640558 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACA-CAGATTTACTATTACACCTCTATTCC
24640603 ATTACA
1 ATTACA
24640609 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (44 bp):
ATTACATTCAACCAAACACAGATTTACTATTACACCTCTATTCC
Found at i:24640608 original size:16 final size:16
Alignment explanation
Indices: 24640589--24640640 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
24640579 GATTTGCTAT
* *
24640589 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
24640605 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
24640621 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
24640637 TACA
1 TACA
24640641 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:24642114 original size:25 final size:23
Alignment explanation
Indices: 24642070--24642130 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 23
24642060 TGGTATTTAA
*
24642070 ATATAATTTATATTATATGA-ATTT
1 ATATAA-TTAAATTATATGATA-TT
24642094 ATGATAATTAAATTATAATGATATT
1 AT-ATAATTAAATTAT-ATGATATT
*
24642119 ATATTATTAAAT
1 ATATAATTAAAT
24642131 GAATTAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 19 0.59
25 12 0.38
26 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (23 bp):
ATATAATTAAATTATATGATATT
Found at i:24643971 original size:153 final size:153
Alignment explanation
Indices: 24643693--24643999 Score: 614
Period size: 153 Copynumber: 2.0 Consensus size: 153
24643683 TAATTGATAC
24643693 TAAACTAAAGTGGAGATTGTACTGAAAAGTGAATTAAATACCCTATTAACTAGTCGGGCTAGTCG
1 TAAACTAAAGTGGAGATTGTACTGAAAAGTGAATTAAATACCCTATTAACTAGTCGGGCTAGTCG
24643758 GATATAGTTGGCATGCATTGGATATGGAAGAGTGCGGGGTATTTGCCGGCTTACTGATCAGGCAC
66 GATATAGTTGGCATGCATTGGATATGGAAGAGTGCGGGGTATTTGCCGGCTTACTGATCAGGCAC
24643823 TTATGTGCCGACTACTGTTACTG
131 TTATGTGCCGACTACTGTTACTG
24643846 TAAACTAAAGTGGAGATTGTACTGAAAAGTGAATTAAATACCCTATTAACTAGTCGGGCTAGTCG
1 TAAACTAAAGTGGAGATTGTACTGAAAAGTGAATTAAATACCCTATTAACTAGTCGGGCTAGTCG
24643911 GATATAGTTGGCATGCATTGGATATGGAAGAGTGCGGGGTATTTGCCGGCTTACTGATCAGGCAC
66 GATATAGTTGGCATGCATTGGATATGGAAGAGTGCGGGGTATTTGCCGGCTTACTGATCAGGCAC
24643976 TTATGTGCCGACTACTGTTACTG
131 TTATGTGCCGACTACTGTTACTG
24643999 T
1 T
24644000 TACCGATTCG
Statistics
Matches: 154, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
153 154 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (153 bp):
TAAACTAAAGTGGAGATTGTACTGAAAAGTGAATTAAATACCCTATTAACTAGTCGGGCTAGTCG
GATATAGTTGGCATGCATTGGATATGGAAGAGTGCGGGGTATTTGCCGGCTTACTGATCAGGCAC
TTATGTGCCGACTACTGTTACTG
Found at i:24644033 original size:39 final size:39
Alignment explanation
Indices: 24643971--24644086 Score: 99
Period size: 45 Copynumber: 2.8 Consensus size: 39
24643961 TTACTGATCA
* * * *
24643971 GGCAC-TTATGTGCCGACTACTGTTACTGTTACCGATTC
1 GGCACTTTGTGTGTCGAATACTGTTACTGTTACAGATTC
24644009 GGCACTTTGTGTGTCGAATACTGTTACCGTTACTGTTACAGATTC
1 GGCACTTTGTGTGTCGAATAC---T---GTTACTGTTACAGATTC
* * * *
24644054 AGCACTTTGTGTGTTGAATAATGTCACTGTTAC
1 GGCACTTTGTGTGTCGAATACTGTTACTGTTAC
24644087 TATTACTGTT
Statistics
Matches: 63, Mismatches: 8, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
38 5 0.08
39 22 0.35
42 2 0.03
45 34 0.54
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (39 bp):
GGCACTTTGTGTGTCGAATACTGTTACTGTTACAGATTC
Found at i:24644098 original size:51 final size:45
Alignment explanation
Indices: 24643988--24644092 Score: 147
Period size: 45 Copynumber: 2.3 Consensus size: 45
24643978 ATGTGCCGAC
* *
24643988 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGT
* * *
24644033 TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAATAATGT
1 TACTGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGT
* *
24644078 CACTGTTACTATTAC
1 TACTGTTACTGTTAC
24644093 TGTTACCATT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (45 bp):
TACTGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGT
Found at i:24646630 original size:17 final size:17
Alignment explanation
Indices: 24646608--24646716 Score: 87
Period size: 17 Copynumber: 6.5 Consensus size: 17
24646598 ACGACTATAC
24646608 TTTATATGCAAGTTGTG
1 TTTATATGCAAGTTGTG
** *
24646625 TTTATATGTGAGTTGTC
1 TTTATATGCAAGTTGTG
* *
24646642 TTTATATGTAAGCTG-G
1 TTTATATGCAAGTTGTG
* * *
24646658 GTTATATGCGAGTTGTA
1 TTTATATGCAAGTTGTG
* * * *
24646675 TGTATATGCGAGCTATG
1 TTTATATGCAAGTTGTG
*
24646692 TTTATACGCAAGTTGTG
1 TTTATATGCAAGTTGTG
24646709 -TTATATGC
1 TTTATATGC
24646717 GAACTGCGTT
Statistics
Matches: 69, Mismatches: 22, Indels: 3
0.73 0.23 0.03
Matches are distributed among these distances:
16 18 0.26
17 51 0.74
ACGTcount: A:0.23, C:0.08, G:0.25, T:0.44
Consensus pattern (17 bp):
TTTATATGCAAGTTGTG
Found at i:24646671 original size:33 final size:34
Alignment explanation
Indices: 24646607--24646748 Score: 110
Period size: 33 Copynumber: 4.2 Consensus size: 34
24646597 AACGACTATA
* * *
24646607 CTTTATATGCAAGTTGTGTTTATATGTGAGTTGT
1 CTTTATATGCAAGCTGTGGTTATATGCGAGTTGT
*
24646641 CTTTATATGTAAGCTG-GGTTATATGCGAGTTGT
1 CTTTATATGCAAGCTGTGGTTATATGCGAGTTGT
* * * * * * *
24646674 ATGTATATGCGAGCTATGTTTATACGCAAGTTGT
1 CTTTATATGCAAGCTGTGGTTATATGCGAGTTGT
* * * * *
24646708 -GTTATATGCGAA-CTGCGTTTATATGTGTGTTGT
1 CTTTATATGC-AAGCTGTGGTTATATGCGAGTTGT
24646741 CTTTATAT
1 CTTTATAT
24646749 TCGAGCTATG
Statistics
Matches: 83, Mismatches: 22, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
33 48 0.58
34 35 0.42
ACGTcount: A:0.22, C:0.09, G:0.24, T:0.45
Consensus pattern (34 bp):
CTTTATATGCAAGCTGTGGTTATATGCGAGTTGT
Found at i:24646696 original size:50 final size:50
Alignment explanation
Indices: 24646609--24646718 Score: 121
Period size: 50 Copynumber: 2.2 Consensus size: 50
24646599 CGACTATACT
* * * * * * * *
24646609 TTATATGCAAGTTGTGTTTATATGTGAGTTGTCTTTATATGTAAGCTGGG
1 TTATATGCGAGTTGTATGTATATGCGAGCTATCTTTATACGCAAGCTGGG
* * *
24646659 TTATATGCGAGTTGTATGTATATGCGAGCTATGTTTATACGCAAGTTGTG
1 TTATATGCGAGTTGTATGTATATGCGAGCTATCTTTATACGCAAGCTGGG
24646709 TTATATGCGA
1 TTATATGCGA
24646719 ACTGCGTTTA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.24, C:0.08, G:0.25, T:0.43
Consensus pattern (50 bp):
TTATATGCGAGTTGTATGTATATGCGAGCTATCTTTATACGCAAGCTGGG
Found at i:24646746 original size:50 final size:50
Alignment explanation
Indices: 24646624--24646747 Score: 122
Period size: 50 Copynumber: 2.5 Consensus size: 50
24646614 TGCAAGTTGT
* * ** *
24646624 GTTTATATGTGAGTTGTCTTTATATGTAAGCTGGGTTATATGCGAGTTGT
1 GTTTATATGTGAGTTGTCTTTATACGCAAGCTGGGTTATATGCGAACTGC
* * * * * * * *
24646674 ATGTATATGCGAGCTATGTTTATACGCAAGTTGTGTTATATGCGAACTGC
1 GTTTATATGTGAGTTGTCTTTATACGCAAGCTGGGTTATATGCGAACTGC
*
24646724 GTTTATATGTGTGTTGTCTTTATA
1 GTTTATATGTGAGTTGTCTTTATA
24646748 TTCGAGCTAT
Statistics
Matches: 54, Mismatches: 20, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.22, C:0.09, G:0.25, T:0.44
Consensus pattern (50 bp):
GTTTATATGTGAGTTGTCTTTATACGCAAGCTGGGTTATATGCGAACTGC
Found at i:24652428 original size:9 final size:9
Alignment explanation
Indices: 24652411--24652441 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
24652401 TCGAGTTGAT
24652411 TCGAATAAC
1 TCGAATAAC
*
24652420 TCGATTAAC
1 TCGAATAAC
24652429 TCGAATAAC
1 TCGAATAAC
24652438 TCGA
1 TCGA
24652442 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:24654504 original size:50 final size:50
Alignment explanation
Indices: 24654429--24654527 Score: 162
Period size: 50 Copynumber: 2.0 Consensus size: 50
24654419 TTCAGAATTC
* *
24654429 TGACTTCTGATATATAAAACATAAGGAAGAATACGTTTTGTTGGTAAAAT
1 TGACTTCTGATATATAAAACATAAGGAAGAATACATTTGGTTGGTAAAAT
* *
24654479 TGACTTCTGGTATATAAAACATAAGGAAGGATACATTTGGTTGGTAAAA
1 TGACTTCTGATATATAAAACATAAGGAAGAATACATTTGGTTGGTAAAA
24654528 AACTGACTTC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.32
Consensus pattern (50 bp):
TGACTTCTGATATATAAAACATAAGGAAGAATACATTTGGTTGGTAAAAT
Found at i:24662887 original size:24 final size:24
Alignment explanation
Indices: 24662860--24662911 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
24662850 TGAGGGGGAG
24662860 TATTGAGAATCTTTGATTATTTGA
1 TATTGAGAATCTTTGATTATTTGA
24662884 TATTGAGAATCTTTGATTATTTGA
1 TATTGAGAATCTTTGATTATTTGA
24662908 TATT
1 TATT
24662912 ATTAAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.29, C:0.04, G:0.15, T:0.52
Consensus pattern (24 bp):
TATTGAGAATCTTTGATTATTTGA
Found at i:24672406 original size:15 final size:14
Alignment explanation
Indices: 24672375--24672404 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
24672365 TCATATAAAA
24672375 TTATTAAAGATGAT
1 TTATTAAAGATGAT
*
24672389 TTATTTAAGATGAT
1 TTATTAAAGATGAT
24672403 TT
1 TT
24672405 TAAATTGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (14 bp):
TTATTAAAGATGAT
Found at i:24672604 original size:16 final size:14
Alignment explanation
Indices: 24672568--24672600 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
24672558 TTAAAATTTC
24672568 AATATTG-AAAAAA
1 AATATTGAAAAAAA
24672581 AATATTGAAAAAAA
1 AATATTGAAAAAAA
24672595 AATATT
1 AATATT
24672601 TTGAGCTTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (14 bp):
AATATTGAAAAAAA
Found at i:24681109 original size:23 final size:24
Alignment explanation
Indices: 24681065--24681111 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
24681055 TTTTTTTTAA
* * *
24681065 TTTCGAATTTAAATCGAGTTAAAT
1 TTTCGAATTCAAATCAACTTAAAT
24681089 TTTCGAATTCAAAT-AACTTAAAT
1 TTTCGAATTCAAATCAACTTAAAT
24681112 AAATCAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (24 bp):
TTTCGAATTCAAATCAACTTAAAT
Found at i:24683371 original size:153 final size:153
Alignment explanation
Indices: 24683093--24683398 Score: 612
Period size: 153 Copynumber: 2.0 Consensus size: 153
24683083 TTGTTTTCAA
24683093 ATTTTTCGGGGTTTAGTGTTTTATCTCCATCTTTTGTACTTTTTGTTCTTTTGCCATTATAGTAA
1 ATTTTTCGGGGTTTAGTGTTTTATCTCCATCTTTTGTACTTTTTGTTCTTTTGCCATTATAGTAA
24683158 AATTATATTTGCCCGTAGTTTTTTTTTATCCTTTTTGGAAGGGTTTTTCCACGTTAAATTTGTGT
66 AATTATATTTGCCCGTAGTTTTTTTTTATCCTTTTTGGAAGGGTTTTTCCACGTTAAATTTGTGT
24683223 GTTCAATTTCTCAATTTATTCTG
131 GTTCAATTTCTCAATTTATTCTG
24683246 ATTTTTCGGGGTTTAGTGTTTTATCTCCATCTTTTGTACTTTTTGTTCTTTTGCCATTATAGTAA
1 ATTTTTCGGGGTTTAGTGTTTTATCTCCATCTTTTGTACTTTTTGTTCTTTTGCCATTATAGTAA
24683311 AATTATATTTGCCCGTAGTTTTTTTTTATCCTTTTTGGAAGGGTTTTTCCACGTTAAATTTGTGT
66 AATTATATTTGCCCGTAGTTTTTTTTTATCCTTTTTGGAAGGGTTTTTCCACGTTAAATTTGTGT
24683376 GTTCAATTTCTCAATTTATTCTG
131 GTTCAATTTCTCAATTTATTCTG
24683399 CTATTTTTTT
Statistics
Matches: 153, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
153 153 1.00
ACGTcount: A:0.18, C:0.14, G:0.15, T:0.54
Consensus pattern (153 bp):
ATTTTTCGGGGTTTAGTGTTTTATCTCCATCTTTTGTACTTTTTGTTCTTTTGCCATTATAGTAA
AATTATATTTGCCCGTAGTTTTTTTTTATCCTTTTTGGAAGGGTTTTTCCACGTTAAATTTGTGT
GTTCAATTTCTCAATTTATTCTG
Found at i:24690565 original size:7 final size:6
Alignment explanation
Indices: 24690546--24690577 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
24690536 CGTTTTGATT
*
24690546 AATAAA AATAAA AATAAA AATAAA AATTAA AA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AA
24690578 CATGAAAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AATAAA
Found at i:24693356 original size:35 final size:36
Alignment explanation
Indices: 24693276--24693347 Score: 92
Period size: 35 Copynumber: 2.0 Consensus size: 36
24693266 TAAACATTAA
* ***
24693276 AAAATTATTTTAAAAATAAAAAAATAAAAATATTTT
1 AAAAGTATTTTAAAAATAAAAAAATAAAAATAAAAT
*
24693312 AAAAGTATTTT-AAAATTAAAAAATAAAAATAAAAT
1 AAAAGTATTTTAAAAATAAAAAAATAAAAATAAAAT
24693347 A
1 A
24693348 TATATATTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
35 21 0.68
36 10 0.32
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (36 bp):
AAAAGTATTTTAAAAATAAAAAAATAAAAATAAAAT
Found at i:24695176 original size:19 final size:19
Alignment explanation
Indices: 24695127--24695178 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
24695117 TTCTCATAAA
24695127 AAATATTAAAAA-ATTATG
1 AAATATTAAAAATATTATG
* * * *
24695145 AAAAATCATAAATATTATT
1 AAATATTAAAAATATTATG
24695164 AAATATTAAAAATAT
1 AAATATTAAAAATAT
24695179 ACAATCACAA
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 9 0.35
19 17 0.65
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (19 bp):
AAATATTAAAAATATTATG
Found at i:24702246 original size:24 final size:24
Alignment explanation
Indices: 24702194--24702246 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
24702184 CTAATTTTTT
* *
24702194 AGAA-TAATATATTTAAATTTTAA
1 AGAATTAATATATTTAAAGTGTAA
*
24702217 AAAATTAATATTATTTAAAGTGT-A
1 AGAATTAATA-TATTTAAAGTGTAA
24702241 AGAATT
1 AGAATT
24702247 GCATTATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
23 3 0.12
24 11 0.46
25 10 0.42
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.42
Consensus pattern (24 bp):
AGAATTAATATATTTAAAGTGTAA
Found at i:24705730 original size:27 final size:27
Alignment explanation
Indices: 24705603--24705734 Score: 156
Period size: 27 Copynumber: 4.9 Consensus size: 27
24705593 TTTCATCTCC
* *
24705603 TAGGGGCATTTCGATCATTTTACCCTA
1 TAGGGGTATTTCGGTCATTTTACCCTA
* *
24705630 TGGGGGTATTTCGGCCATTTTACCCTA
1 TAGGGGTATTTCGGTCATTTTACCCTA
* * *
24705657 TAGGGGTATTTCAGTCATTTAACCTTA
1 TAGGGGTATTTCGGTCATTTTACCCTA
** *
24705684 TAATGGTATTTCGGTCATTTCACCCTA
1 TAGGGGTATTTCGGTCATTTTACCCTA
* *
24705711 TAGGGGTATTTTGGTTATTTTACC
1 TAGGGGTATTTCGGTCATTTTACC
24705735 TATTTTTGGG
Statistics
Matches: 86, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.41
Consensus pattern (27 bp):
TAGGGGTATTTCGGTCATTTTACCCTA
Found at i:24707266 original size:27 final size:26
Alignment explanation
Indices: 24707210--24707267 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
24707200 GTTAACACTT
* *
24707210 AAAAACTAAAGAATTTAAAGTTCATC
1 AAAAACTAAAGAAATTAAAGTGCATC
* * *
24707236 AAAACACTAAATAAATTAATGTGCATG
1 AAAA-ACTAAAGAAATTAAAGTGCATC
24707263 AAAAA
1 AAAAA
24707268 TGTATGAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.57, C:0.10, G:0.09, T:0.24
Consensus pattern (26 bp):
AAAAACTAAAGAAATTAAAGTGCATC
Found at i:24709451 original size:84 final size:85
Alignment explanation
Indices: 24709363--24709730 Score: 235
Period size: 84 Copynumber: 4.4 Consensus size: 85
24709353 TATCGACTTC
*
24709363 AATCTGCTCCACTGTGACTTCAAGGG-GATAAGACTCGATACGATCTGCTCCACTACTGCTT-AG
1 AATCTGCTCCACTGTGACTTC-AGGGAGATAAGACTCGATTCGATCTGCTCCACTACTGCTTCAG
24709426 GGAGATAAGATCTATTCTTTT
65 GGAGATAAGATCTATTCTTTT
** * * * * *
24709447 AATCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTGATTTCTCAGTCTGCCCCACT-GTGACTT
1 AATCTGCTCCACTGTGACTTCAGGGAGATAAGACTCGA-TTC-GA-TCTGCTCCACTACTG-CTT
* *
24709510 CAAGGG-GATAAGACTCGATGC----
62 C-AGGGAGATAAGA-TCTATTCTTTT
* * * * ** * * **
24709531 GATCTGCTCCACTACTG-CTT-AGGGAGATAAGATCTATTGTTTTAATCCGCTCCACTGCAACTT
1 AATCTGCTCCACT-GTGACTTCAGGGAGATAAGA-C--TCGATTCGATCTGCTCCACTACTGCTT
* *
24709594 CAGGGAGATAGGAT-TAATT-TTTC
62 CAGGGAGATAAGATCT-ATTCTTTT
* * * *
24709617 AGTCTGCCCCACTGTGACTTCAAGGG-GATAAGACTCGATGCGATCTGCTCCACTACTGCTT-AA
1 AATCTGCTCCACTGTGACTTC-AGGGAGATAAGACTCGATTCGATCTGCTCCACTACTGCTTCAG
*
24709680 GGAGATAAGATCTATTGTTTT
65 GGAGATAAGATCTATTCTTTT
** **
24709701 AATCCACTCCACTGCAACTTCAGGGAGATA
1 AATCTGCTCCACTGTGACTTCAGGGAGATA
24709731 GGATTGATTT
Statistics
Matches: 210, Mismatches: 48, Indels: 52
0.68 0.15 0.17
Matches are distributed among these distances:
83 43 0.20
84 102 0.49
85 6 0.03
86 29 0.14
87 17 0.08
88 13 0.06
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (85 bp):
AATCTGCTCCACTGTGACTTCAGGGAGATAAGACTCGATTCGATCTGCTCCACTACTGCTTCAGG
GAGATAAGATCTATTCTTTT
Found at i:24709457 original size:43 final size:44
Alignment explanation
Indices: 24709405--24709730 Score: 159
Period size: 43 Copynumber: 7.7 Consensus size: 44
24709395 ACTCGATACG
24709405 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTATTCTTTTA
1 ATCTGCTCCACTACTGCTTCAGGGAGATAAGATCTATTCTTTTA
* ** * * *
24709448 ATCTGCTCCACTGCAACTTCAGGGAGATAGGAT-TGATT-TCTCA
1 ATCTGCTCCACTACTGCTTCAGGGAGATAAGATCT-ATTCTTTTA
* * * * * *
24709491 GTCTGCCCCACT-GTGACTTCAAGGG-GATAAGACTCGATGC----G
1 ATCTGCTCCACTACTG-CTTC-AGGGAGATAAGA-TCTATTCTTTTA
*
24709532 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTATTGTTTTA
1 ATCTGCTCCACTACTGCTTCAGGGAGATAAGATCTATTCTTTTA
* * ** * *
24709575 ATCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TAATT-TTTCA
1 ATCTGCTCCACTACTGCTTCAGGGAGATAAGATCT-ATTCTTTTA
* * * * * *
24709618 GTCTGCCCCACT-GTGACTTCAAGGG-GATAAGACTCGATGC----G
1 ATCTGCTCCACTACTG-CTTC-AGGGAGATAAGA-TCTATTCTTTTA
* *
24709659 ATCTGCTCCACTACTGCTT-AAGGAGATAAGATCTATTGTTTTA
1 ATCTGCTCCACTACTGCTTCAGGGAGATAAGATCTATTCTTTTA
** * **
24709702 ATCCACTCCACTGCAACTTCAGGGAGATA
1 ATCTGCTCCACTACTGCTTCAGGGAGATA
24709731 GGATTGATTT
Statistics
Matches: 204, Mismatches: 52, Indels: 53
0.66 0.17 0.17
Matches are distributed among these distances:
39 15 0.07
40 14 0.07
41 26 0.13
42 4 0.02
43 93 0.46
44 52 0.25
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCACTACTGCTTCAGGGAGATAAGATCTATTCTTTTA
Found at i:24709552 original size:127 final size:127
Alignment explanation
Indices: 24709320--24709743 Score: 690
Period size: 127 Copynumber: 3.3 Consensus size: 127
24709310 TGGCGTTTCG
* * ** * *
24709320 ATCCACTCCACTGCAA-TGTCGGGGAGATAGGATT-ATCGACTTCAATCTGCTCCACTGTGACTT
1 ATCCGCTCCACTGCAACT-TCAGGGAGATAGGATTGAT-TTC-TCAGTCTGCCCCACTGTGACTT
* *
24709383 CAAGGGGATAAGACTCGATACGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATTCTTTTA
63 CAAGGGGATAAGACTCGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATTGTTTTA
*
24709448 ATCTGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTCAGTCTGCCCCACTGTGACTTCAA
1 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTCAGTCTGCCCCACTGTGACTTCAA
24709513 GGGGATAAGACTCGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATTGTTTTA
66 GGGGATAAGACTCGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATTGTTTTA
* *
24709575 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATTTTTCAGTCTGCCCCACTGTGACTTCAA
1 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTCAGTCTGCCCCACTGTGACTTCAA
*
24709640 GGGGATAAGACTCGATGCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTATTGTTTTA
66 GGGGATAAGACTCGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATTGTTTTA
*
24709702 ATCCACTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTC
1 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTC
24709744 CTGTTTGCTC
Statistics
Matches: 278, Mismatches: 16, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
127 245 0.88
128 30 0.11
129 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (127 bp):
ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTCAGTCTGCCCCACTGTGACTTCAA
GGGGATAAGACTCGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATTGTTTTA
Found at i:24709887 original size:87 final size:87
Alignment explanation
Indices: 24709796--24709968 Score: 231
Period size: 87 Copynumber: 2.0 Consensus size: 87
24709786 TCCAACCTAT
* * * *
24709796 TCCACTACTGGTCAGGGACATAGGACTT-GTGGCTTAAATCTGTTTCCCTACTCCTGGGAAAGAT
1 TCCACTACTGCTCAGGGACATAAGA-TTAATGGCTTAAACCTGTTTCCCTACTCCTGGGAAAGAT
* *
24709860 AAGATTCGCCGTTTTGGATCTGC
65 AAGATTCGCCGTCTTCGATCTGC
* * * * *
24709883 TCCACTATTGCTTAGGGAGATAAGATTAATGGCTTAAACCTGTTTCCCTACTCCTGGGGAAGATG
1 TCCACTACTGCTCAGGGACATAAGATTAATGGCTTAAACCTGTTTCCCTACTCCTGGGAAAGATA
24709948 AGATTCGCCGTCTTCGATCTG
66 AGATTCGCCGTCTTCGATCTG
24709969 TTTCCCTACT
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
86 2 0.03
87 72 0.97
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (87 bp):
TCCACTACTGCTCAGGGACATAAGATTAATGGCTTAAACCTGTTTCCCTACTCCTGGGAAAGATA
AGATTCGCCGTCTTCGATCTGC
Found at i:24709991 original size:87 final size:87
Alignment explanation
Indices: 24709825--24710081 Score: 322
Period size: 87 Copynumber: 3.0 Consensus size: 87
24709815 ATAGGACTTG
* * *
24709825 TGGCTTAAATCTGTTTCCCTACTCCTGGGAAAGATAAGATTCGCCGTTTTGGATCTG-CTCCACT
1 TGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTGGATCTGTTTCC-CT
* *
24709889 ATTGCTTAGGG-AGATAAGATTAA
65 ACT-CTTGGGGAAGATAAGATTAA
* * *
24709912 TGGCTTAAACCTGTTTCCCTACTCCTGGGGAAGATGAGATTCGCCGTCTTCGATCTGTTTCCCTA
1 TGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTGGATCTGTTTCCCTA
**
24709977 CTCTTGGGGAAGATAAGATTCG
66 CTCTTGGGGAAGATAAGATTAA
* *** * *
24709999 TAGCTCGGATTTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCAG-CTTGGATCTGTTTCCCTA
1 TGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTGGATCTGTTTCCCTA
*
24710063 CTCCTGGGGAAGATAAGAT
66 CTCTTGGGGAAGATAAGAT
24710082 CCGTAATATT
Statistics
Matches: 148, Mismatches: 20, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
86 41 0.28
87 104 0.70
88 3 0.02
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (87 bp):
TGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTGGATCTGTTTCCCTA
CTCTTGGGGAAGATAAGATTAA
Found at i:24710028 original size:43 final size:43
Alignment explanation
Indices: 24709922--24710081 Score: 241
Period size: 43 Copynumber: 3.7 Consensus size: 43
24709912 TGGCTTAAAC
* *
24709922 CTGTTTCCCTACTCCTGGGGAAGATGAGATTCGCCGTCTTC-GAT
1 CTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCAG-C-TCGGAT
* *
24709966 CTGTTTCCCTACTCTTGGGGAAGATAAGATTCGTAGCTCGGAT
1 CTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCAGCTCGGAT
* *
24710009 TTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCAGCTTGGAT
1 CTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCAGCTCGGAT
24710052 CTGTTTCCCTACTCCTGGGGAAGATAAGAT
1 CTGTTTCCCTACTCCTGGGGAAGATAAGAT
24710082 CCGTAATATT
Statistics
Matches: 106, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
42 2 0.02
43 72 0.68
44 32 0.30
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32
Consensus pattern (43 bp):
CTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCAGCTCGGAT
Found at i:24711319 original size:14 final size:13
Alignment explanation
Indices: 24711296--24711353 Score: 64
Period size: 15 Copynumber: 4.2 Consensus size: 13
24711286 AGCCTCTCCA
24711296 TTTTACTTTTCATT
1 TTTTA-TTTTCATT
24711310 TTTTCATTTTCATTT
1 TTTT-ATTTTCA-TT
24711325 TTTTATTTTTCATCT
1 TTTTA-TTTTCAT-T
24711340 TTTTATTTT-ATT
1 TTTTATTTTCATT
24711352 TT
1 TT
24711354 ATTGTCTCGT
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 2 0.05
14 16 0.40
15 19 0.47
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTATTTTCATT
Found at i:24711328 original size:15 final size:14
Alignment explanation
Indices: 24711296--24711353 Score: 73
Period size: 14 Copynumber: 4.1 Consensus size: 14
24711286 AGCCTCTCCA
24711296 TTTTACTTTTCATTT
1 TTTTA-TTTTCATTT
*
24711311 TTTCATTTTCATTT
1 TTTTATTTTCATTT
*
24711325 TTTTATTTTTCATCT
1 TTTTA-TTTTCATTT
24711340 TTTTATTTT-ATTT
1 TTTTATTTTCATTT
24711353 T
1 T
24711354 ATTGTCTCGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
13 4 0.11
14 17 0.45
15 17 0.45
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTATTTTCATTT
Found at i:24711334 original size:29 final size:28
Alignment explanation
Indices: 24711296--24711353 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 28
24711286 AGCCTCTCCA
24711296 TTTTACTTTTCAT-TTTTTCATTTTCATTT
1 TTTTACTTTTCATCTTTTT-ATTTT-ATTT
*
24711325 TTTTATTTTTCATCTTTTTATTTTATTT
1 TTTTACTTTTCATCTTTTTATTTTATTT
24711353 T
1 T
24711354 ATTGTCTCGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 5 0.19
29 17 0.63
30 5 0.19
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (28 bp):
TTTTACTTTTCATCTTTTTATTTTATTT
Found at i:24715589 original size:73 final size:73
Alignment explanation
Indices: 24715465--24715619 Score: 256
Period size: 73 Copynumber: 2.1 Consensus size: 73
24715455 ATCCCCAGTG
* *
24715465 GAGTCGCCAAGCTATCGAAACCATCTTTTCTGAAATTTGAAAAAACGGGGATCGACTTTTAAAAC
1 GAGTCGCCAAGCTATCGAAACCATCTTTTCTGAAATTGGAAAAAACAGGGATCGACTTTTAAAAC
24715530 GAAAACTA
66 GAAAACTA
* * *
24715538 GAGTCGCCAAGCTGTCGAAACCATCTTTTCTGAAATTGGAAAAAATAGGGATCGACTTTTAAAAT
1 GAGTCGCCAAGCTATCGAAACCATCTTTTCTGAAATTGGAAAAAACAGGGATCGACTTTTAAAAC
*
24715603 GAAAACTG
66 GAAAACTA
24715611 GAGTCGCCA
1 GAGTCGCCA
24715620 CCGATCTTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
73 76 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.25
Consensus pattern (73 bp):
GAGTCGCCAAGCTATCGAAACCATCTTTTCTGAAATTGGAAAAAACAGGGATCGACTTTTAAAAC
GAAAACTA
Found at i:24716501 original size:27 final size:26
Alignment explanation
Indices: 24716445--24716502 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
24716435 GTTAACACTT
* *
24716445 AAAAACTAAAGAATTTAAAGTTCATC
1 AAAAACTAAAGAAATTAAAGTGCATC
* * *
24716471 AAAACACTAAATAAATTAATGTGCATG
1 AAAA-ACTAAAGAAATTAAAGTGCATC
24716498 AAAAA
1 AAAAA
24716503 TGTATGAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.57, C:0.10, G:0.09, T:0.24
Consensus pattern (26 bp):
AAAAACTAAAGAAATTAAAGTGCATC
Found at i:24729601 original size:4 final size:4
Alignment explanation
Indices: 24729592--24729658 Score: 55
Period size: 4 Copynumber: 16.2 Consensus size: 4
24729582 CTAACTTTTC
* * *
24729592 TCTT TCTT TCTT TCTCT T-TT TCTT TCCTT TCTT TCCT TCTC TGTT TCGTT
1 TCTT TCTT TCTT TCT-T TCTT TCTT T-CTT TCTT TCTT TCTT TCTT TC-TT
* *
24729642 TCTT TCTC TCAT TCTT T
1 TCTT TCTT TCTT TCTT T
24729659 ATCTATTTCT
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
3 2 0.04
4 37 0.76
5 10 0.20
ACGTcount: A:0.01, C:0.28, G:0.03, T:0.67
Consensus pattern (4 bp):
TCTT
Found at i:24729610 original size:21 final size:21
Alignment explanation
Indices: 24729586--24729650 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
24729576 GAAACCCTAA
24729586 CTTTTCTCTTTCTTTCTTTCT
1 CTTTTCTCTTTCTTTCTTTCT
24729607 CTTTT-TCTTTCCTTTCTTTC-
1 CTTTTCTCTTT-CTTTCTTTCT
* *
24729627 CTTCTCTGTTTCGTTTCTTTCT
1 CTTTTCTCTTTC-TTTCTTTCT
24729649 CT
1 CT
24729651 CATTCTTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
20 10 0.26
21 26 0.68
22 2 0.05
ACGTcount: A:0.00, C:0.29, G:0.03, T:0.68
Consensus pattern (21 bp):
CTTTTCTCTTTCTTTCTTTCT
Found at i:24729623 original size:25 final size:26
Alignment explanation
Indices: 24729588--24729648 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 26
24729578 AACCCTAACT
* *
24729588 TTTCTCTTTCTTTCTTTCTCTTTTTC-
1 TTTC-CTTTCTTTCCTTCTCTGTTTCG
24729614 TTTCCTTTCTTTCCTTCTCTGTTTCG
1 TTTCCTTTCTTTCCTTCTCTGTTTCG
24729640 TTT-CTTTCT
1 TTTCCTTTCT
24729649 CTCATTCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 25 0.78
26 7 0.22
ACGTcount: A:0.00, C:0.28, G:0.03, T:0.69
Consensus pattern (26 bp):
TTTCCTTTCTTTCCTTCTCTGTTTCG
Found at i:24729656 original size:25 final size:25
Alignment explanation
Indices: 24729592--24729656 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
24729582 CTAACTTTTC
* *
24729592 TCTTTCTTTCTTTCTCTTTTTC-TT
1 TCTTTCTTTCATTCTCTGTTTCGTT
*
24729616 TCCTTTCTTTCCTTCTCTGTTTCGTT
1 T-CTTTCTTTCATTCTCTGTTTCGTT
*
24729642 TCTTTCTCTCATTCT
1 TCTTTCTTTCATTCT
24729657 TTATCTATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
24 1 0.03
25 31 0.89
26 3 0.09
ACGTcount: A:0.02, C:0.29, G:0.03, T:0.66
Consensus pattern (25 bp):
TCTTTCTTTCATTCTCTGTTTCGTT
Found at i:24729691 original size:5 final size:5
Alignment explanation
Indices: 24729681--24729722 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
24729671 TTCTTTTACT
24729681 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TA
24729723 CTTAACTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:24730935 original size:21 final size:22
Alignment explanation
Indices: 24730893--24730942 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
24730883 CTTTTATTCG
* *
24730893 AAACATGTGATTTAATGGCTAA
1 AAACATGTGATTTAAAGACTAA
*
24730915 AAACATG-GCTTTAAAGACTAA
1 AAACATGTGATTTAAAGACTAA
24730936 ATAACAT
1 A-AACAT
24730943 TTAAAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.28
Consensus pattern (22 bp):
AAACATGTGATTTAAAGACTAA
Found at i:24731165 original size:9 final size:9
Alignment explanation
Indices: 24731151--24731176 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
24731141 AGTTGGGACT
24731151 TTGGGAGAG
1 TTGGGAGAG
24731160 TTGGGAGAG
1 TTGGGAGAG
24731169 TTGGGAGA
1 TTGGGAGA
24731177 ATAAAAGGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.54, T:0.23
Consensus pattern (9 bp):
TTGGGAGAG
Found at i:24733029 original size:22 final size:23
Alignment explanation
Indices: 24732999--24733043 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
24732989 AATAATAAAA
24732999 TAATAATAA-AAGTCAAACATAT
1 TAATAATAAGAAGTCAAACATAT
*
24733021 TAATTATAATGGAAGTCAAACAT
1 TAATAATAA--GAAGTCAAACAT
24733044 TTTTTTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 8 0.42
25 11 0.58
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.29
Consensus pattern (23 bp):
TAATAATAAGAAGTCAAACATAT
Found at i:24733318 original size:15 final size:16
Alignment explanation
Indices: 24733277--24733318 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
24733267 TATGAATTTA
*
24733277 TTTAATTAA-AGTATT
1 TTTAATTAATATTATT
24733292 TTTAATTAATATTATT
1 TTTAATTAATATTATT
24733308 TTT-ATTAATAT
1 TTTAATTAATAT
24733319 ACTAAAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 17 0.68
16 8 0.32
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TTTAATTAATATTATT
Found at i:24734558 original size:22 final size:22
Alignment explanation
Indices: 24734532--24734596 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 22
24734522 TATTTTTCAC
*
24734532 TATTGTTTTGCTGCCATTTTGA
1 TATTGTTTTGCTACCATTTTGA
*
24734554 TATTGTTTTGCTACCATTTTGC
1 TATTGTTTTGCTACCATTTTGA
* * *
24734576 TATTATATTGCTACTATTTTG
1 TATTGTTTTGCTACCATTTTG
24734597 TTGTTATTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.17, C:0.14, G:0.14, T:0.55
Consensus pattern (22 bp):
TATTGTTTTGCTACCATTTTGA
Found at i:24737214 original size:31 final size:31
Alignment explanation
Indices: 24737179--24737246 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
24737169 TTTTGGGTTC
* *
24737179 AATTTGATACCTAAGCTTCACACTTTTTAC-T
1 AATTTGACACCTAAACTTCACACTTTTT-CTT
* *
24737210 AATTTCACACCTAAACTTGACACTTTTTCTT
1 AATTTGACACCTAAACTTCACACTTTTTCTT
24737241 AATTTG
1 AATTTG
24737247 GTACTTAATC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 1 0.03
31 30 0.97
ACGTcount: A:0.29, C:0.22, G:0.06, T:0.43
Consensus pattern (31 bp):
AATTTGACACCTAAACTTCACACTTTTTCTT
Found at i:24737312 original size:90 final size:90
Alignment explanation
Indices: 24737121--24737313 Score: 203
Period size: 90 Copynumber: 2.1 Consensus size: 90
24737111 TAATATAAAC
* * * * * *
24737121 ATTTGATATCTGAATTTGACATTTTTTCTTAATTTGGTATCTAAGAGTTTTTGGGTTCAATTTGA
1 ATTTGATACCTAAACTTGACACTTTTTCTTAATTTGGTATCTAAGACTTTTTGGGGTCAATTTGA
24737186 TACCTAAGCTTCACACTTTTTACTA
66 TACCTAAGCTTCACACTTTTTACTA
* * *
24737211 ATTTCACACCTAAACTTGACACTTTTTCTTAATTTGGTA-CTTAA-TCTTTTTGGGGTCAAATTT
1 ATTTGATACCTAAACTTGACACTTTTTCTTAATTTGGTATC-TAAGACTTTTTGGGGTC-AATTT
* * * ** *
24737274 GGTATCTGAA-CTTGATTCTTTTTCCTA
64 GATACCT-AAGCTTCACACTTTTTACTA
24737301 ATTTGATACCTAA
1 ATTTGATACCTAA
24737314 TCTTTTTTTT
Statistics
Matches: 83, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
89 11 0.13
90 70 0.84
91 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (90 bp):
ATTTGATACCTAAACTTGACACTTTTTCTTAATTTGGTATCTAAGACTTTTTGGGGTCAATTTGA
TACCTAAGCTTCACACTTTTTACTA
Found at i:24737773 original size:32 final size:32
Alignment explanation
Indices: 24737736--24737805 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
24737726 AGCTTAGGTG
24737736 CCAAATTAGGAAAAAAATACTAAGTTCAAGTA
1 CCAAATTAGGAAAAAAATACTAAGTTCAAGTA
* ** * *
24737768 CCAAATTGGGACTAAAATATTAAGTTTAAGTA
1 CCAAATTAGGAAAAAAATACTAAGTTCAAGTA
24737800 CCAAAT
1 CCAAAT
24737806 ATTATATTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.49, C:0.13, G:0.13, T:0.26
Consensus pattern (32 bp):
CCAAATTAGGAAAAAAATACTAAGTTCAAGTA
Found at i:24738334 original size:10 final size:10
Alignment explanation
Indices: 24738315--24738345 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
24738305 AGGGTCGTTA
*
24738315 TGAATTTAAT
1 TGAATGTAAT
24738325 TGAATGTAAT
1 TGAATGTAAT
24738335 TGAATGTAAT
1 TGAATGTAAT
24738345 T
1 T
24738346 AGACTATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (10 bp):
TGAATGTAAT
Found at i:24739136 original size:11 final size:11
Alignment explanation
Indices: 24739105--24739143 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
24739095 AATCTGCTAT
24739105 TTTTTTTGTTA
1 TTTTTTTGTTA
**
24739116 TTTTAATGTTA
1 TTTTTTTGTTA
*
24739127 TTTTTTTGTTG
1 TTTTTTTGTTA
24739138 TTTTTT
1 TTTTTT
24739144 ACCTATTTTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.79
Consensus pattern (11 bp):
TTTTTTTGTTA
Found at i:24740702 original size:30 final size:29
Alignment explanation
Indices: 24740666--24740727 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 29
24740656 ACTTAACAAG
24740666 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAA-AAAATTAA
* *
24740696 CAAATGTCTTTAAAATAATAATAAATTAA
1 CAAATGTCTCTAAAATAATAAAAAATTAA
24740725 CAA
1 CAA
24740728 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.56, C:0.11, G:0.03, T:0.29
Consensus pattern (29 bp):
CAAATGTCTCTAAAATAATAAAAAATTAA
Found at i:24750090 original size:73 final size:73
Alignment explanation
Indices: 24749971--24750114 Score: 225
Period size: 73 Copynumber: 2.0 Consensus size: 73
24749961 ATTGTCTCAG
* * * *
24749971 GGTAGGTCACTTTATAACCTTACCCTCAATTGGGAGCATGCAATTGTTATCAATACCTTGTCATA
1 GGTAGGTCACTTTATAACCTTACCCTCAATTGGGAGCAAGAAATTGTTATCAATACATTGCCATA
24750036 ACACACAT
66 ACACACAT
** *
24750044 GGTAGGTCACTTTATAACCTTACCCTTGATTGGGGGCAAGAAATTGTTATCAATACATTGCCATA
1 GGTAGGTCACTTTATAACCTTACCCTCAATTGGGAGCAAGAAATTGTTATCAATACATTGCCATA
24750109 ACACAC
66 ACACAC
24750115 CTTGCCACCC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 64 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (73 bp):
GGTAGGTCACTTTATAACCTTACCCTCAATTGGGAGCAAGAAATTGTTATCAATACATTGCCATA
ACACACAT
Found at i:24751359 original size:18 final size:17
Alignment explanation
Indices: 24751338--24751386 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
24751328 ATATATAAAA
24751338 TATAAAAAAT-ATATATTT
1 TATAAAAAATCA-A-ATTT
*
24751356 TATAAAACATCAAATTT
1 TATAAAAAATCAAATTT
*
24751373 TATAAAATATCAAA
1 TATAAAAAATCAAA
24751387 GATTTATGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 17 0.61
18 10 0.36
19 1 0.04
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (17 bp):
TATAAAAAATCAAATTT
Found at i:24751372 original size:17 final size:17
Alignment explanation
Indices: 24751352--24751386 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
24751342 AAAAATATAT
24751352 ATTTTATAAAACATCAA
1 ATTTTATAAAACATCAA
*
24751369 ATTTTATAAAATATCAA
1 ATTTTATAAAACATCAA
24751386 A
1 A
24751387 GATTTATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (17 bp):
ATTTTATAAAACATCAA
Found at i:24769234 original size:27 final size:27
Alignment explanation
Indices: 24769190--24769241 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
24769180 GTATATATAT
24769190 ATTTAAGTCCATAATCTAACATTTTCC
1 ATTTAAGTCCATAATCTAACATTTTCC
* *
24769217 ATTTAAGTCCTTAGTCTAACATTTT
1 ATTTAAGTCCATAATCTAACATTTT
24769242 TCTTGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.19, G:0.06, T:0.44
Consensus pattern (27 bp):
ATTTAAGTCCATAATCTAACATTTTCC
Done.