Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 89 of 187
Found at i:26035559 original size:23 final size:22
Alignment explanation
Indices: 26035490--26035550 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
26035480 TGTTTGTTTA
*
26035490 TTAATTTG-ATCGTTAACAATG
1 TTAATTCGCATCGTTAACAATG
*
26035511 TTAATTCGCATTGTTAACAATG
1 TTAATTCGCATCGTTAACAATG
26035533 TTAATTCGCATCGCTTAA
1 TTAATTCGCATCG-TTAA
26035551 AGTTGTTAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
21 7 0.20
22 24 0.69
23 4 0.11
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (22 bp):
TTAATTCGCATCGTTAACAATG
Found at i:26053979 original size:52 final size:52
Alignment explanation
Indices: 26053922--26054023 Score: 195
Period size: 52 Copynumber: 2.0 Consensus size: 52
26053912 AACAACTTGT
26053922 GAAATGTCAGGCCGCGTACACACCATCGCATACATCAAACTCCCAACTGCGG
1 GAAATGTCAGGCCGCGTACACACCATCGCATACATCAAACTCCCAACTGCGG
*
26053974 GAAATGTCAGGCCTCGTACACACCATCGCATACATCAAACTCCCAACTGC
1 GAAATGTCAGGCCGCGTACACACCATCGCATACATCAAACTCCCAACTGC
26054024 ATTAGCATAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.31, C:0.35, G:0.17, T:0.17
Consensus pattern (52 bp):
GAAATGTCAGGCCGCGTACACACCATCGCATACATCAAACTCCCAACTGCGG
Found at i:26054326 original size:60 final size:60
Alignment explanation
Indices: 26054232--26054353 Score: 235
Period size: 60 Copynumber: 2.0 Consensus size: 60
26054222 CTCCATGCCG
26054232 AGAATCTTCTTGGCCTCACCTAGATCTTTCATCTCGAACTCTTGATTCAACTGAGCCTTC
1 AGAATCTTCTTGGCCTCACCTAGATCTTTCATCTCGAACTCTTGATTCAACTGAGCCTTC
*
26054292 AGAATCTTCTTGGCCTCACCTAGATCTTTTATCTCGAACTCTTGATTCAACTGAGCCTTC
1 AGAATCTTCTTGGCCTCACCTAGATCTTTCATCTCGAACTCTTGATTCAACTGAGCCTTC
26054352 AG
1 AG
26054354 CTTATCTATC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.22, C:0.29, G:0.14, T:0.35
Consensus pattern (60 bp):
AGAATCTTCTTGGCCTCACCTAGATCTTTCATCTCGAACTCTTGATTCAACTGAGCCTTC
Found at i:26058286 original size:17 final size:18
Alignment explanation
Indices: 26058252--26058289 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
26058242 AAATAAAAAT
**
26058252 AAATAAATTAAATTTAAA
1 AAATAAATTAAACCTAAA
26058270 AAAT-AATTAAACCTAAA
1 AAATAAATTAAACCTAAA
26058287 AAA
1 AAA
26058290 AATAAGTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (18 bp):
AAATAAATTAAACCTAAA
Found at i:26063402 original size:20 final size:20
Alignment explanation
Indices: 26063377--26063416 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26063367 AAACAACACT
26063377 TAGCAAAACTTTAAGAGAAA
1 TAGCAAAACTTTAAGAGAAA
26063397 TAGCAAAACTTTAAGAGAAA
1 TAGCAAAACTTTAAGAGAAA
26063417 ACCTCTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.10, G:0.15, T:0.20
Consensus pattern (20 bp):
TAGCAAAACTTTAAGAGAAA
Found at i:26080331 original size:11 final size:11
Alignment explanation
Indices: 26080307--26080349 Score: 61
Period size: 11 Copynumber: 3.8 Consensus size: 11
26080297 AAGAAAGAGG
26080307 GTAGAGAGAAT
1 GTAGAGAGAAT
26080318 GTAGA-AGAAGT
1 GTAGAGAGAA-T
26080329 GTAGAGAGAAT
1 GTAGAGAGAAT
26080340 GTAGAAGAGA
1 GTAG-AGAGA
26080350 GAGTATATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
10 4 0.14
11 16 0.55
12 9 0.31
ACGTcount: A:0.47, C:0.00, G:0.37, T:0.16
Consensus pattern (11 bp):
GTAGAGAGAAT
Found at i:26080504 original size:28 final size:28
Alignment explanation
Indices: 26080473--26080535 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
26080463 TCCCATATTA
*
26080473 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAAGAAAAGTCTCATAACTT
* * *
26080501 ATGGGGTATAAGAAGAGTTTTATAACTT
1 ATGGGGTATAAGAAAAGTCTCATAACTT
26080529 ATGGGGT
1 ATGGGGT
26080536 TGATAATGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAAGAAAAGTCTCATAACTT
Found at i:26083450 original size:37 final size:37
Alignment explanation
Indices: 26083400--26083478 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26083390 TTATTATGAA
* *
26083400 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
26083437 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
26083474 GTCTT
1 GTCTT
26083479 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:26083675 original size:47 final size:47
Alignment explanation
Indices: 26083597--26083976 Score: 607
Period size: 47 Copynumber: 8.1 Consensus size: 47
26083587 CCCTTCGGGA
* * * * * * *
26083597 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*** *
26083644 CCCGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26083691 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26083738 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
26083785 CTTATTACATATATACACTTTCTCATTCATCACATCGGCTATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26083832 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26083879 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26083926 CTTATCACATATATACACTTTCACATTCATCCCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26083973 CTTA
1 CTTA
26083977 CTATCATTTC
Statistics
Matches: 307, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 307 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26087448 original size:40 final size:40
Alignment explanation
Indices: 26087391--26087573 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
26087381 CCAGCATGAT
* *
26087391 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
26087431 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
26087471 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
26087512 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
26087552 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
26087574 CATCATTCGA
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.03
40 96 0.81
41 20 0.17
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:26087920 original size:29 final size:29
Alignment explanation
Indices: 26087881--26087959 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
26087871 CTTAATAATC
*
26087881 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
26087911 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
26087940 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26087960 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:26089905 original size:37 final size:38
Alignment explanation
Indices: 26089855--26089934 Score: 110
Period size: 38 Copynumber: 2.1 Consensus size: 38
26089845 TTATTACGAA
* *
26089855 GTCTTACCCGGAC-ATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAAATTC-CCACACGAAGTCATCGG
*
26089892 GTCTTACCCGGACAAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAAATTCCCACACGAAGTCATCGG
26089930 GTCTT
1 GTCTT
26089935 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.34
38 23 0.61
39 2 0.05
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (38 bp):
GTCTTACCCGGACAAAAATTCCCACACGAAGTCATCGG
Found at i:26090131 original size:47 final size:47
Alignment explanation
Indices: 26090053--26090481 Score: 687
Period size: 47 Copynumber: 9.1 Consensus size: 47
26090043 CCCTTCGCGA
* * * * * * *
26090053 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*** *
26090100 CCCGTCACATCTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26090147 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26090194 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26090241 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26090288 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26090335 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26090382 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26090429 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26090478 CTTA
1 CTTA
26090482 CTATCATTTC
Statistics
Matches: 356, Mismatches: 24, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 314 0.88
49 42 0.12
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26094491 original size:34 final size:34
Alignment explanation
Indices: 26094453--26094521 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
26094443 GAAAGAATTG
*
26094453 ATTTAACTTAAAGTAGTTATATGGAATTGATTTA
1 ATTTAACTTAAAGTAGTTATATGGAATTCATTTA
* * *
26094487 ATTTATCTTGAAGTATTTATATGGAATTCATTTA
1 ATTTAACTTAAAGTAGTTATATGGAATTCATTTA
26094521 A
1 A
26094522 ATAATAAATC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.46
Consensus pattern (34 bp):
ATTTAACTTAAAGTAGTTATATGGAATTCATTTA
Found at i:26094652 original size:23 final size:22
Alignment explanation
Indices: 26094577--26094659 Score: 85
Period size: 23 Copynumber: 3.7 Consensus size: 22
26094567 GTAACATTTG
* *
26094577 ATATGCTTTAAATGCTGGCAAA
1 ATATGTTTTAAATGCTGTCAAA
* *
26094599 AGCATGTTTCAAATGCTGTCAAA
1 A-TATGTTTTAAATGCTGTCAAA
* * *
26094622 GTAGGTTTTAAATGTTGTCCAAA
1 ATATGTTTTAAATGCTGT-CAAA
26094645 ATATGTTTTAAATGC
1 ATATGTTTTAAATGC
26094660 CATCCAAAGC
Statistics
Matches: 47, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
22 14 0.30
23 33 0.70
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (22 bp):
ATATGTTTTAAATGCTGTCAAA
Found at i:26097287 original size:21 final size:23
Alignment explanation
Indices: 26097250--26097297 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
26097240 TGTTACATTT
26097250 AAATGCTAGCAAAAGTATG-TTC
1 AAATGCTAGCAAAAGTATGTTTC
*
26097272 AAATGCTATC-AAAGTATGTTTC
1 AAATGCTAGCAAAAGTATGTTTC
26097294 AAAT
1 AAAT
26097298 CTTGTCCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (23 bp):
AAATGCTAGCAAAAGTATGTTTC
Found at i:26097351 original size:23 final size:23
Alignment explanation
Indices: 26097281--26097352 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 23
26097271 CAAATGCTAT
* *
26097281 CAAAGTATGTTTCAAATCTTGTC
1 CAAAGTATGTTTTAAATGTTGTC
* **
26097304 CAAAATATGTTTTAAATGTCATC
1 CAAAGTATGTTTTAAATGTTGTC
* *
26097327 CAAAGCATGTTTTAAGTGTTGTC
1 CAAAGTATGTTTTAAATGTTGTC
26097350 CAA
1 CAA
26097353 GTTGGACATT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (23 bp):
CAAAGTATGTTTTAAATGTTGTC
Found at i:26097472 original size:105 final size:105
Alignment explanation
Indices: 26097339--26097877 Score: 933
Period size: 105 Copynumber: 5.2 Consensus size: 105
26097329 AAGCATGTTT
* *
26097339 TAAGTG-TTGTCC-AAGTTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
1 TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
* * ***
26097402 AAGTGTTTATGTCAATTTTAATGCTAATATTAT-AGGTGG
66 AAGTGTTTATGTCGATTTTAATGCTGATATTATAAGCAAG
* *
26097441 ATAAGTGATTTTGCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAA
1 -TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAA
26097506 TAAGTGTTTATGTCGATTTTAATGCTGATATTATAAGCAAG
65 TAAGTGTTTATGTCGATTTTAATGCTGATATTATAAGCAAG
26097547 TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
1 TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
26097612 AAGTGTTTATGTCGATTTTAATGCTGATATTATAAGCAAG
66 AAGTGTTTATGTCGATTTTAATGCTGATATTATAAGCAAG
26097652 TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
1 TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
26097717 AAGTGTTTATGTCGATTTTAATGCTGATATTATAAGCAAG
66 AAGTGTTTATGTCGATTTTAATGCTGATATTATAAGCAAG
26097757 TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
1 TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
* *
26097822 AAGTGTTTATGTCGATTTTAATGCTAATATTATAGGCGAA-
66 AAGTGTTTATGTCGATTTTAATGCTGATATTATAAGC-AAG
26097862 TAAGTGTTTTTCCAAA
1 TAAGTGTTTTTCCAAA
26097878 AAAAACTATA
Statistics
Matches: 420, Mismatches: 12, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
103 6 0.01
104 4 0.01
105 405 0.96
106 5 0.01
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.43
Consensus pattern (105 bp):
TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
AAGTGTTTATGTCGATTTTAATGCTGATATTATAAGCAAG
Found at i:26098370 original size:36 final size:36
Alignment explanation
Indices: 26098266--26098688 Score: 190
Period size: 36 Copynumber: 11.7 Consensus size: 36
26098256 GAATGAATGA
* * *
26098266 ACACTCATTTGTCGGTTTTACCGACCAGAGCAGGGC
1 ACACTCATTTGTCGATTTTACCGACCAGTGCTGGGC
* * * * * ** * *
26098302 ACATTTATTT-ACCAGTTATAGTGACTATTGCTGGGC
1 ACACTCATTTGTCGA-TTTTACCGACCAGTGCTGGGC
* *
26098338 ACACTCATTTGAT-GATTTTATCGACCAGTGCTGGGT
1 ACACTCATTTG-TCGATTTTACCGACCAGTGCTGGGC
* * * * ** **
26098374 ACACACAGTTGTCTTGGTTTTACCGAACAGCACAAGGC
1 ACACTCATTTGTC--GATTTTACCGACCAGTGCTGGGC
* * * * * *
26098412 ACATTTATTTGTCGGTTATATCGACTAGTGCTGGGC
1 ACACTCATTTGTCGATTTTACCGACCAGTGCTGGGC
* * * *
26098448 ACACTCATTTGTCGGTTTTACCGACCAGCGCAGGGT
1 ACACTCATTTGTCGATTTTACCGACCAGTGCTGGGC
* * * * * *
26098484 GCATTTATTTGTCGATTATACCGACTAGTGCTGGGT
1 ACACTCATTTGTCGATTTTACCGACCAGTGCTGGGC
* * *
26098520 ACACTCATTTGTCGATTTTACTGACCAGCGCAGGGC
1 ACACTCATTTGTCGATTTTACCGACCAGTGCTGGGC
* * * * * * *
26098556 ACATTTATTTGTCAATTATACTGACCAGTGCTAGAC
1 ACACTCATTTGTCGATTTTACCGACCAGTGCTGGGC
* * * * ** *
26098592 ACACTTATTTGTCGGTATTACTGAAGAATG-TAGGGC
1 ACACTCATTTGTCGATTTTACCGACCAGTGCT-GGGC
* * ** *
26098628 ACATTTATTTGTC-AGTTACACCGACAAGTGCTGGGC
1 ACACTCATTTGTCGA-TTTTACCGACCAGTGCTGGGC
* *
26098664 ACACACATTT-TCAAGTTTTACCGAC
1 ACACTCATTTGTCGA-TTTTACCGAC
26098689 TAGCGCAGTG
Statistics
Matches: 276, Mismatches: 101, Indels: 20
0.70 0.25 0.05
Matches are distributed among these distances:
35 5 0.02
36 245 0.89
37 2 0.01
38 24 0.09
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (36 bp):
ACACTCATTTGTCGATTTTACCGACCAGTGCTGGGC
Found at i:26098493 original size:72 final size:72
Alignment explanation
Indices: 26098359--26098696 Score: 336
Period size: 72 Copynumber: 4.7 Consensus size: 72
26098349 ATGATTTTAT
* * * * * *
26098359 CGACCAGTGCTGGGTACACACAGTTGTCTTGGTTTTACCGAACAGCACAAGGCACATTTATTTGT
1 CGACCAGTGCTGGGCACACTCATTTGTC--GGTTTTACCGACCAGCGCAGGGCACATTTATTTGT
** *
26098424 CGGTTATAT
64 CAATTATAC
* ** *
26098433 CGACTAGTGCTGGGCACACTCATTTGTCGGTTTTACCGACCAGCGCAGGGTGCATTTATTTGTCG
1 CGACCAGTGCTGGGCACACTCATTTGTCGGTTTTACCGACCAGCGCAGGGCACATTTATTTGTCA
26098498 ATTATAC
66 ATTATAC
* * * *
26098505 CGACTAGTGCTGGGTACACTCATTTGTCGATTTTACTGACCAGCGCAGGGCACATTTATTTGTCA
1 CGACCAGTGCTGGGCACACTCATTTGTCGGTTTTACCGACCAGCGCAGGGCACATTTATTTGTCA
26098570 ATTATAC
66 ATTATAC
* * * * * * ** ** *
26098577 TGACCAGTGCTAGACACACTTATTTGTCGGTATTACTGAAGAATGTAGGGCACATTTATTTGTCA
1 CGACCAGTGCTGGGCACACTCATTTGTCGGTTTTACCGACCAGCGCAGGGCACATTTATTTGTCA
* *
26098642 GTTACAC
66 ATTATAC
* * * *
26098649 CGACAAGTGCTGGGCACACACATTT-TCAAGTTTTACCGACTAGCGCAG
1 CGACCAGTGCTGGGCACACTCATTTGTC-GGTTTTACCGACCAGCGCAG
26098697 TGTAACACCT
Statistics
Matches: 217, Mismatches: 46, Indels: 4
0.81 0.17 0.01
Matches are distributed among these distances:
71 2 0.01
72 191 0.88
74 24 0.11
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (72 bp):
CGACCAGTGCTGGGCACACTCATTTGTCGGTTTTACCGACCAGCGCAGGGCACATTTATTTGTCA
ATTATAC
Found at i:26098496 original size:110 final size:108
Alignment explanation
Indices: 26098266--26098483 Score: 262
Period size: 110 Copynumber: 2.0 Consensus size: 108
26098256 GAATGAATGA
* * * *
26098266 ACACTCATTTGTCGGTTTTACCGACCAGAGCAGGGCACATTTATTTACCAGTTATAGTGACTATT
1 ACACACATTTGTCGGTTTTACCGAACAGAGCAAGGCACATTTATTTACCAGTTATAGTGACTAGT
* * *
26098331 GCTGGGCACACTCATTTGATGATTTTATCGACCAGTGCTGGGT
66 GCTGGGCACACTCATTTGATGATTTTACCGACCAGCGCAGGGT
* ** *
26098374 ACACACAGTTGTCTTGGTTTTACCGAACAGCA-CAAGGCACATTTATTTGTCGGTTATA-TCGAC
1 ACACACATTTGTC--GGTTTTACCGAACAG-AGCAAGGCACATTTATTTACCAGTTATAGT-GAC
*
26098437 TAGTGCTGGGCACACTCATTTG-TCGGTTTTACCGACCAGCGCAGGGT
62 TAGTGCTGGGCACACTCATTTGAT-GATTTTACCGACCAGCGCAGGGT
26098484 GCATTTATTT
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
108 11 0.12
109 2 0.02
110 79 0.85
111 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (108 bp):
ACACACATTTGTCGGTTTTACCGAACAGAGCAAGGCACATTTATTTACCAGTTATAGTGACTAGT
GCTGGGCACACTCATTTGATGATTTTACCGACCAGCGCAGGGT
Found at i:26107226 original size:21 final size:20
Alignment explanation
Indices: 26107197--26107235 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
26107187 ATTATATTGG
*
26107197 GAGAACAAATATTATCCTAAA
1 GAGAACAAAGA-TATCCTAAA
*
26107218 GAGATCAAAGATATCCTA
1 GAGAACAAAGATATCCTA
26107236 TGAGGGTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.49, C:0.15, G:0.13, T:0.23
Consensus pattern (20 bp):
GAGAACAAAGATATCCTAAA
Found at i:26110938 original size:24 final size:24
Alignment explanation
Indices: 26110893--26110939 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
26110883 GTTCCAGAAA
*
26110893 AAAAGAGAAGAAACTAAGAGAGAG
1 AAAAGAGAAGAAAATAAGAGAGAG
*
26110917 AAAAGAAGGAGAAAATAA-AGAGA
1 AAAAG-AGAAGAAAATAAGAGAGA
26110940 AACAGCAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.66, C:0.02, G:0.28, T:0.04
Consensus pattern (24 bp):
AAAAGAGAAGAAAATAAGAGAGAG
Found at i:26112964 original size:49 final size:49
Alignment explanation
Indices: 26112908--26113002 Score: 154
Period size: 49 Copynumber: 1.9 Consensus size: 49
26112898 TGCGACAGCT
* * *
26112908 AATGTCTGCTTTGTTGATCTTCATGATATGGTAGTACCCCAACATGCAA
1 AATGTCTGCTTTGTTGAACGTCATGATATGGCAGTACCCCAACATGCAA
*
26112957 AATGTCTGCTTTGTTGAACGTCATGATGTGGCAGTACCCCAACATG
1 AATGTCTGCTTTGTTGAACGTCATGATATGGCAGTACCCCAACATG
26113003 TAAATAAATA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (49 bp):
AATGTCTGCTTTGTTGAACGTCATGATATGGCAGTACCCCAACATGCAA
Found at i:26117050 original size:98 final size:98
Alignment explanation
Indices: 26116881--26117058 Score: 356
Period size: 98 Copynumber: 1.8 Consensus size: 98
26116871 TTCCATAGGT
26116881 TTATCAACACAAATGTACATACTAATATGTTTTTAGCCAAATACATTATTTAATTATAAAACCTA
1 TTATCAACACAAATGTACATACTAATATGTTTTTAGCCAAATACATTATTTAATTATAAAACCTA
26116946 CTATAGAAATATAAACCATAATACATTATTTAA
66 CTATAGAAATATAAACCATAATACATTATTTAA
26116979 TTATCAACACAAATGTACATACTAATATGTTTTTAGCCAAATACATTATTTAATTATAAAACCTA
1 TTATCAACACAAATGTACATACTAATATGTTTTTAGCCAAATACATTATTTAATTATAAAACCTA
26117044 CTATAGAAATATAAA
66 CTATAGAAATATAAA
26117059 AAAGTCAATC
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 80 1.00
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.35
Consensus pattern (98 bp):
TTATCAACACAAATGTACATACTAATATGTTTTTAGCCAAATACATTATTTAATTATAAAACCTA
CTATAGAAATATAAACCATAATACATTATTTAA
Found at i:26117605 original size:43 final size:44
Alignment explanation
Indices: 26117552--26117641 Score: 119
Period size: 43 Copynumber: 2.1 Consensus size: 44
26117542 GAAATCATGG
* ***
26117552 AGAATAAATTTAATCGTCGATAAAAGGTTTTATCACTTTGAGCA
1 AGAATAAATTTAATCCTCGATAAAAGGAAGTATCACTTTGAGCA
* *
26117596 AGAA-AAATTTGATCCTCGATAAAAGGAAGTATCATTTTGAGCA
1 AGAATAAATTTAATCCTCGATAAAAGGAAGTATCACTTTGAGCA
26117639 AGA
1 AGA
26117642 TCGTTCTGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
43 36 0.90
44 4 0.10
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (44 bp):
AGAATAAATTTAATCCTCGATAAAAGGAAGTATCACTTTGAGCA
Found at i:26130609 original size:24 final size:25
Alignment explanation
Indices: 26130562--26130609 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
26130552 AAATAATCAA
** *
26130562 TTTAATTTAAAATATATGATAATAT
1 TTTAATTTAAAATATACAAAAATAT
26130587 TTTAATTTAAAAT-TACAAAAATA
1 TTTAATTTAAAATATACAAAAATA
26130610 ATCATATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (25 bp):
TTTAATTTAAAATATACAAAAATAT
Found at i:26137030 original size:15 final size:14
Alignment explanation
Indices: 26137010--26137041 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
26137000 CACATCCCAA
26137010 AAATTGGGTTAGTAG
1 AAATTGGGTTAGT-G
26137025 AAATTGGGTTAGTG
1 AAATTGGGTTAGTG
26137039 AAA
1 AAA
26137042 CCCAGAGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (14 bp):
AAATTGGGTTAGTG
Found at i:26144270 original size:16 final size:16
Alignment explanation
Indices: 26144249--26144279 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26144239 GGGGAAAATA
*
26144249 AAAAGTTTTAGGGAAT
1 AAAAGTTTGAGGGAAT
26144265 AAAAGTTTGAGGGAA
1 AAAAGTTTGAGGGAA
26144280 AGTAAATAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (16 bp):
AAAAGTTTGAGGGAAT
Found at i:26144405 original size:30 final size:31
Alignment explanation
Indices: 26144366--26144425 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
26144356 AGAGGAGGGA
*
26144366 TGGGAAGGGAATAAAAGTTTT-AGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTGA-GGGAAAAG
*
26144397 TGGG-AGGGACTAAAAATTTTGAGGGAAAA
1 TGGGAAGGGAATAAAAATTTTGAGGGAAAA
26144426 TAAAATGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.42, C:0.02, G:0.37, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTGAGGGAAAAG
Found at i:26144653 original size:9 final size:9
Alignment explanation
Indices: 26144639--26144675 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
26144629 TATAGTTTAA
26144639 TATTCGAAT
1 TATTCGAAT
26144648 TATTCGAAT
1 TATTCGAAT
*
26144657 TATTCGAGT
1 TATTCGAAT
26144666 TATTCGAAT
1 TATTCGAAT
26144675 T
1 T
26144676 CAAAAATTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:26144745 original size:18 final size:18
Alignment explanation
Indices: 26144724--26144761 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
26144714 ATAATTTGAG
*
26144724 TTGATTCGAATAACTCGA
1 TTGACTCGAATAACTCGA
26144742 TTGACTCGAATAACTCGA
1 TTGACTCGAATAACTCGA
26144760 TT
1 TT
26144762 CGTTTAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (18 bp):
TTGACTCGAATAACTCGA
Found at i:26150915 original size:18 final size:18
Alignment explanation
Indices: 26150892--26150926 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26150882 AAATTATGGG
*
26150892 CTCACATGCTCGTGTGGA
1 CTCACATGCCCGTGTGGA
26150910 CTCACATGCCCGTGTGG
1 CTCACATGCCCGTGTGG
26150927 GCCCCTATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.31, G:0.29, T:0.26
Consensus pattern (18 bp):
CTCACATGCCCGTGTGGA
Found at i:26164512 original size:27 final size:27
Alignment explanation
Indices: 26164482--26164572 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
26164472 CATCACGTGG
*
26164482 TAAAATGGCTATTATGCCCCTAAGTTA
1 TAAAATGACTATTATGCCCCTAAGTTA
** *
26164509 TAAAATGACGGTTATGCCTC-AATGTTA
1 TAAAATGACTATTATGCCCCTAA-GTTA
26164536 TAAAATGACTATTATGCCCCTATA-TTA
1 TAAAATGACTATTATGCCCCTA-AGTTA
26164563 TAAAATGACT
1 TAAAATGACT
26164573 TATGCTTAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
26 2 0.04
27 50 0.93
28 1 0.02
29 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.34
Consensus pattern (27 bp):
TAAAATGACTATTATGCCCCTAAGTTA
Found at i:26164515 original size:54 final size:55
Alignment explanation
Indices: 26164451--26164570 Score: 156
Period size: 54 Copynumber: 2.2 Consensus size: 55
26164441 CCCCCAAACT
* * *
26164451 GTTATAAAATGAATGTTATGCCATC-ACGTGGTAAAATGGCTATTATGCCCCTA-A
1 GTTATAAAATGAAGGTTATGCC-TCAACGTGATAAAATGACTATTATGCCCCTATA
* * *
26164505 GTTATAAAATGACGGTTATGCCTCAATGTTATAAAATGACTATTATGCCCCTATA
1 GTTATAAAATGAAGGTTATGCCTCAACGTGATAAAATGACTATTATGCCCCTATA
26164560 -TTATAAAATGA
1 GTTATAAAATGA
26164571 CTTATGCTTA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
53 2 0.03
54 55 0.95
55 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (55 bp):
GTTATAAAATGAAGGTTATGCCTCAACGTGATAAAATGACTATTATGCCCCTATA
Found at i:26164571 original size:54 final size:51
Alignment explanation
Indices: 26164482--26164587 Score: 151
Period size: 54 Copynumber: 2.0 Consensus size: 51
26164472 CATCACGTGG
*
26164482 TAAAATGGCTATTATGCCCCTAAGTTATAAAATGACGGTTATGCCTCAATGTTA
1 TAAAATGACTATTATGCCCCTAAGTTATAAAATGAC--TTATG-CTCAATGTTA
*
26164536 TAAAATGACTATTATGCCCCTATA-TTATAAAATGACTTATGCTTAATGTTA
1 TAAAATGACTATTATGCCCCTA-AGTTATAAAATGACTTATGCTCAATGTTA
26164587 T
1 T
26164588 GTATAACTGT
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
51 10 0.20
52 5 0.10
54 33 0.67
55 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (51 bp):
TAAAATGACTATTATGCCCCTAAGTTATAAAATGACTTATGCTCAATGTTA
Found at i:26169172 original size:35 final size:34
Alignment explanation
Indices: 26169121--26169189 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 34
26169111 GAAGTGGGAA
*
26169121 AGAGTAACTATAGACTTCGTTAGTGGGCTACCCC
1 AGAGTAACTATAGACTTCGTTAGTGGACTACCCC
*
26169155 NAGAGTAACTATGGACTTCGTTAGTGGACTACCCC
1 -AGAGTAACTATAGACTTCGTTAGTGGACTACCCC
26169190 TAACGCGTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.26
Consensus pattern (34 bp):
AGAGTAACTATAGACTTCGTTAGTGGACTACCCC
Found at i:26170697 original size:33 final size:33
Alignment explanation
Indices: 26170660--26170724 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
26170650 TAGGAGGAGT
* *
26170660 TAATTAAGGAATTTTAAAGGTTATTAGAAAATC
1 TAATTAAGGAATTCTAAAGGTTATCAGAAAATC
*
26170693 TAATTAAGGAATTCTAGAGGTTATCAGAAAAT
1 TAATTAAGGAATTCTAAAGGTTATCAGAAAAT
26170725 TTGATAGAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.45, C:0.05, G:0.17, T:0.34
Consensus pattern (33 bp):
TAATTAAGGAATTCTAAAGGTTATCAGAAAATC
Found at i:26171836 original size:27 final size:27
Alignment explanation
Indices: 26171793--26171940 Score: 208
Period size: 27 Copynumber: 5.5 Consensus size: 27
26171783 ACCCCCAAAG
*
26171793 TGTTATAAAATGACTATTATG-CCCTCA
1 TGTTGTAAAATGACTATTATGCCCCT-A
* * *
26171820 CGTGGTAAAATAACTATTATGCCCCTA
1 TGTTGTAAAATGACTATTATGCCCCTA
* **
26171847 TGTTATAAAATGACGGTTATGCCCCTA
1 TGTTGTAAAATGACTATTATGCCCCTA
26171874 TGTTGTAAAATGACTATTATGCCCCTA
1 TGTTGTAAAATGACTATTATGCCCCTA
26171901 TGTTGTAAAATGACTATTATGCCCCTA
1 TGTTGTAAAATGACTATTATGCCCCTA
*
26171928 TGTTATAAAATGA
1 TGTTGTAAAATGA
26171941 TTGTATGCTT
Statistics
Matches: 106, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 102 0.96
28 4 0.04
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (27 bp):
TGTTGTAAAATGACTATTATGCCCCTA
Found at i:26172265 original size:34 final size:33
Alignment explanation
Indices: 26172216--26172292 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 33
26172206 TGCATGTTTA
* *
26172216 AACTGTTACTGTCACTGTAATGGACTAGGGCCC
1 AACTGATACTGTCACTGTAATGGACTAAGGCCC
*
26172249 ACACTGATACTGTCACTGTAATGGGCTAAGGCCC
1 A-ACTGATACTGTCACTGTAATGGACTAAGGCCC
26172283 AACTGA-ACTG
1 AACTGATACTG
26172293 AACTGTTATT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
32 4 0.10
33 6 0.15
34 30 0.75
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (33 bp):
AACTGATACTGTCACTGTAATGGACTAAGGCCC
Found at i:26173728 original size:18 final size:19
Alignment explanation
Indices: 26173690--26173728 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26173680 AGGAAGCAGA
* *
26173690 TTTTCAAAAGATGTATTTT
1 TTTTCAAAACATGTATGTT
26173709 TTTTCAAAACAT-TATGTT
1 TTTTCAAAACATGTATGTT
26173727 TT
1 TT
26173729 CGTACCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (19 bp):
TTTTCAAAACATGTATGTT
Found at i:26177136 original size:22 final size:22
Alignment explanation
Indices: 26177072--26177137 Score: 87
Period size: 24 Copynumber: 2.9 Consensus size: 22
26177062 ATCTGCATCG
*
26177072 TTGAGTGGTTTATCCACACCAT
1 TTGAGTGGTTTATTCACACCAT
* *
26177094 TTGAGTAGCTTTTATTTACACCAT
1 TTGAGT-G-GTTTATTCACACCAT
26177118 TTGAGTGGTTTATTCACACC
1 TTGAGTGGTTTATTCACACC
26177138 GTATTAGCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 17 0.46
23 2 0.05
24 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.41
Consensus pattern (22 bp):
TTGAGTGGTTTATTCACACCAT
Found at i:26177191 original size:45 final size:44
Alignment explanation
Indices: 26177119--26177204 Score: 100
Period size: 45 Copynumber: 1.9 Consensus size: 44
26177109 TTACACCATT
** * * *
26177119 TGAGTGGTTTATTCACACCGTATTAGCAACTTTTATCTGCAACAA
1 TGAGTGGTTTAACCACACCATACTAGC-ACTTTAATCTGCAACAA
* *
26177164 TGAGTGGTTTAACCACACTATACTAGCAGTTTAATCTGCAA
1 TGAGTGGTTTAACCACACCATACTAGCACTTTAATCTGCAA
26177205 ACATGTTGTG
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
44 12 0.35
45 22 0.65
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (44 bp):
TGAGTGGTTTAACCACACCATACTAGCACTTTAATCTGCAACAA
Found at i:26178233 original size:18 final size:18
Alignment explanation
Indices: 26178198--26178248 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
26178188 CTCCTGGACG
*
26178198 TTCTTTTTG-TTGTTTCTT
1 TTCTTTTTGCTT-TCTCTT
26178216 TTCTTTTTGCTTTCTCTT
1 TTCTTTTTGCTTTCTCTT
** *
26178234 TGATTTTTTCTTTCT
1 TTCTTTTTGCTTTCT
26178249 TTCTCTTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 26 0.93
19 2 0.07
ACGTcount: A:0.02, C:0.16, G:0.08, T:0.75
Consensus pattern (18 bp):
TTCTTTTTGCTTTCTCTT
Found at i:26179038 original size:17 final size:18
Alignment explanation
Indices: 26179004--26179039 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26178994 AAAATAAATG
26179004 AAATATATTATATTATAA
1 AAATATATTATATTATAA
*
26179022 AAATTTATTAT-TTATAA
1 AAATATATTATATTATAA
26179039 A
1 A
26179040 GTTTCATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
AAATATATTATATTATAA
Found at i:26179142 original size:16 final size:15
Alignment explanation
Indices: 26179121--26179154 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
26179111 AAGGAAACAT
26179121 AATAATTTAAATATAA
1 AATAA-TTAAATATAA
*
26179137 AATAATTCAATATAA
1 AATAATTAAATATAA
26179152 AAT
1 AAT
26179155 TTTATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAATTAAATATAA
Found at i:26181442 original size:10 final size:10
Alignment explanation
Indices: 26181415--26181481 Score: 55
Period size: 10 Copynumber: 6.5 Consensus size: 10
26181405 ACTAAAATAA
*
26181415 AAATTAAATT
1 AAATTAAAAT
* *
26181425 GAACTAAAAT
1 AAATTAAAAT
26181435 AAATTAAAAT
1 AAATTAAAAT
26181445 AAATTAAAA-
1 AAATTAAAAT
*
26181454 ATAATTAATTAT
1 A-AATTAA-AAT
*
26181466 AAAATTAAATT
1 -AAATTAAAAT
26181477 AAATT
1 AAATT
26181482 GAAGAAAAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
9 1 0.02
10 35 0.78
11 2 0.04
12 6 0.13
13 1 0.02
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (10 bp):
AAATTAAAAT
Found at i:26181467 original size:21 final size:22
Alignment explanation
Indices: 26181430--26181474 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
26181420 AAATTGAACT
26181430 AAAATAAATTAAAAT-AAATTA
1 AAAATAAATTAAAATAAAATTA
*
26181451 AAAAT-AATTAATTATAAAATTA
1 AAAATAAATTAA-AATAAAATTA
26181473 AA
1 AA
26181475 TTAAATTGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 6 0.29
21 7 0.33
22 8 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATAAATTAAAATAAAATTA
Found at i:26188262 original size:48 final size:46
Alignment explanation
Indices: 26188127--26188300 Score: 161
Period size: 48 Copynumber: 3.5 Consensus size: 46
26188117 ATGGTCACGT
* *
26188127 GTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGATAGGTCGTAT
1 GTGTAGTACTATGTGCAGGCTACTACGTGTATC-G---GATAGGTCGTAC
* * * *
26188177 GTGTAGTACTATGTGCAGGCTACTATGCGTATTGGATAGCTTCGATCAC
1 GTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAG-GTCG-T-AC
*
26188226 GTGT-GTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATGGTCAC
1 GTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAG-G-TCGT-AC
*
26188274 ATGTGTAGTACTATGTGTAGGCTACTA
1 --GTGTAGTACTATGTGCAGGCTACTA
26188301 TGTGAACCAG
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
46 5 0.05
47 3 0.03
48 36 0.35
49 8 0.08
50 33 0.32
51 19 0.18
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (46 bp):
GTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGGTCGTAC
Found at i:26194615 original size:16 final size:16
Alignment explanation
Indices: 26194594--26194624 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26194584 TTTTATATTA
*
26194594 TTTTAATATTAAATAT
1 TTTTAAAATTAAATAT
26194610 TTTTAAAATTAAATA
1 TTTTAAAATTAAATA
26194625 AAATTAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTTAAAATTAAATAT
Found at i:26203682 original size:62 final size:63
Alignment explanation
Indices: 26203542--26203683 Score: 178
Period size: 62 Copynumber: 2.3 Consensus size: 63
26203532 ATTTATATGC
** * * * * *
26203542 TACACGGCCTAGACACACGCCCATGTCCTCTGCTCGTGTGGTTTTAAAACATAAATAGTGAGT
1 TACACGGCCTAGACACACGCCCATGTCCTAGGCTCGTGTAGTCTTAAAACACAAACAGAGAGT
* **
26203605 TACACGGCCTGGACACACGCCCATGTCCTAGGC-CGTGTAGTCTTAAGTCACAAACAGAGAGT
1 TACACGGCCTAGACACACGCCCATGTCCTAGGCTCGTGTAGTCTTAAAACACAAACAGAGAGT
*
26203667 TACACGGCTTAGACACA
1 TACACGGCCTAGACACA
26203684 TGCCTGTGTC
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
62 37 0.55
63 30 0.45
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (63 bp):
TACACGGCCTAGACACACGCCCATGTCCTAGGCTCGTGTAGTCTTAAAACACAAACAGAGAGT
Found at i:26204562 original size:126 final size:125
Alignment explanation
Indices: 26204360--26204618 Score: 439
Period size: 126 Copynumber: 2.1 Consensus size: 125
26204350 TATGGAAGCA
*
26204360 AGCAAAAAGATAAAAAAAGAAAGAAAGAAGAAAACAAAGAACTAGAGAAGGAAATAAAAAGGGAA
1 AGCAAAAAGATAAAAAAAGAAAGAAAGAAGAAAACAAAGAACTAGAGAAGGAAAGAAAAAGGGAA
* * *
26204425 AGAATGATAGAATTAATTCAGAATGATTTAAGTTAACCACCAACCAGCCTTCCGGCGTTT
66 AGAACGATAGAATTAATTCAAAATGATTTAAGTTAACCACCAACCAGCCTTCCAGCGTTT
26204485 AG-AAAAAGATAAAAAAAAAGAAAGAAAGAAGAAAACAAAGAACTAGAGAAGGAAAGAAAAAGGG
1 AGCAAAAAGAT--AAAAAAAGAAAGAAAGAAGAAAACAAAGAACTAGAGAAGGAAAGAAAAAGGG
* *
26204549 AAAGAACGGTAGAATTAATTCAAAATGATTTAAGTTAACCATCAACCAGCCTTCCAGCGTTT
64 AAAGAACGATAGAATTAATTCAAAATGATTTAAGTTAACCACCAACCAGCCTTCCAGCGTTT
26204611 AGCAAAAA
1 AGCAAAAA
26204619 TATTTCCCTA
Statistics
Matches: 125, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
124 8 0.06
125 2 0.02
126 110 0.88
127 5 0.04
ACGTcount: A:0.54, C:0.12, G:0.19, T:0.15
Consensus pattern (125 bp):
AGCAAAAAGATAAAAAAAGAAAGAAAGAAGAAAACAAAGAACTAGAGAAGGAAAGAAAAAGGGAA
AGAACGATAGAATTAATTCAAAATGATTTAAGTTAACCACCAACCAGCCTTCCAGCGTTT
Found at i:26206886 original size:6 final size:6
Alignment explanation
Indices: 26206875--26206909 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
26206865 AAATTATAAT
*
26206875 ATATTA ATATTA CTATTA ATATTA ATATTA ATATT
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATT
26206910 CATAACATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (6 bp):
ATATTA
Found at i:26207124 original size:42 final size:36
Alignment explanation
Indices: 26207089--26207163 Score: 123
Period size: 37 Copynumber: 2.1 Consensus size: 36
26207079 TTCACATGGG
26207089 AATACAAACTAATATATAGTACAAATAACTCCTTCAA
1 AATACAAACTAATATATAGTACAAAT-ACTCCTTCAA
* *
26207126 AATGCAACCTAATATATAGTACAAATACTCCTTCAA
1 AATACAAACTAATATATAGTACAAATACTCCTTCAA
26207162 AA
1 AA
26207164 CAATAAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
36 12 0.33
37 24 0.67
ACGTcount: A:0.49, C:0.20, G:0.04, T:0.27
Consensus pattern (36 bp):
AATACAAACTAATATATAGTACAAATACTCCTTCAA
Found at i:26208864 original size:93 final size:95
Alignment explanation
Indices: 26208747--26208919 Score: 219
Period size: 94 Copynumber: 1.8 Consensus size: 95
26208737 ACCGAAATAA
* * * * * * *
26208747 TAATTAATTTGTATTTGAACCCTATAATTTATATAAATTTTGCA-ATTGGT-TT-GCACGAACAC
1 TAATAAATTTGTATTTGAACCCTATAAATTAAATAAACTAT-AAGATTGGTATTCGCA-AAACAC
*
26208809 GTGTAATTTTAAGAACTATGAACGCATGACGT
64 GTGTAATATTAAGAACTATGAACGCATGACGT
*
26208841 TAATAAATTT-TATTTGAATCCTATAAATTAAATAAACTATAAGATTGGTATTCGCAAAACACGT
1 TAATAAATTTGTATTTGAACCCTATAAATTAAATAAACTATAAGATTGGTATTCGCAAAACACGT
26208905 GTAATATTAAGAACT
66 GTAATATTAAGAACT
26208920 GCAGACGAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
92 1 0.01
93 31 0.46
94 32 0.48
95 3 0.04
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.37
Consensus pattern (95 bp):
TAATAAATTTGTATTTGAACCCTATAAATTAAATAAACTATAAGATTGGTATTCGCAAAACACGT
GTAATATTAAGAACTATGAACGCATGACGT
Found at i:26209342 original size:77 final size:77
Alignment explanation
Indices: 26209246--26209398 Score: 200
Period size: 77 Copynumber: 2.0 Consensus size: 77
26209236 GTAGTTTAAC
* * * * *
26209246 ACTAGAAATCAAATCAATTATAGGATTAATTTTCACAAATACGTGTAATACT-AAGAACTGCGTA
1 ACTAAAAATCAAATCAATTATACGATCAATCTTCACAAATACGTGTAACA-TAAAGAACTGCGTA
*
26209310 TGATTGAATGAAT
65 TGAATGAATGAAT
* * * *
26209323 ACTAAAAATCAAATCAATTATCCGATCAATCTTCACAAGTACGTGTAACATAAAGAATTGCGTCT
1 ACTAAAAATCAAATCAATTATACGATCAATCTTCACAAATACGTGTAACATAAAGAACTGCGTAT
26209388 GAATGAATGAA
66 GAATGAATGAA
26209399 CACAATAATT
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
76 1 0.02
77 64 0.98
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (77 bp):
ACTAAAAATCAAATCAATTATACGATCAATCTTCACAAATACGTGTAACATAAAGAACTGCGTAT
GAATGAATGAAT
Found at i:26214062 original size:195 final size:195
Alignment explanation
Indices: 26213776--26214131 Score: 459
Period size: 195 Copynumber: 1.8 Consensus size: 195
26213766 AATTTAAAGA
*
26213776 ACTACATATGAATGAATGACGACAATAATTTCTATTTGAATCCTATAAATTAAATAAACTATATG
1 ACTACATATGAATGAATGACGACAATAATTTATATTTGAATCCTATAAATTAAATAAACTATATG
*** * * * * *
26213841 ATTGATGTTGACAAAACCCATGTAATATTGAGAACAACATAAAAATAAATGAAGACGATGGTTTG
66 ACCCATCTTGACAAAACACATGTAATAATAAGAACAACATAAAAACAAATGAAGACGATGGTTTG
* *
26213906 TATTTTAACTCTAAATATCAAATCAATTATATGATCGATCTTCACAAACATGAGTAATATTGATT
131 TATTTTAACACTAAAAATCAAATCAATTATATGATCGATCTTCACAAACATGAGTAATATTGATT
* * *
26213971 ACTACATATGAAT-ACATGACGATAATAATTTATATTTGAAT-CTCGTAAATTAAATAAATTATA
1 ACTACATATGAATGA-ATGACGACAATAATTTATATTTGAATCCT-ATAAATTAAATAAACTAT-
* ** * * *
26214034 AT-ACCCATCTTCG-CAAAACACGTGTAATAATAAGAACTGCATAAGAACCAATGAAGACTATGG
63 ATGACCCATCTT-GACAAAACACATGTAATAATAAGAACAACATAAAAACAAATGAAGACGATGG
*
26214097 TTTTTATTTTAACACTAAAAATCAAATCAATTATA
127 TTTGTATTTTAACACTAAAAATCAAATCAATTATA
26214132 ATACTCTTTG
Statistics
Matches: 136, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
194 3 0.02
195 130 0.96
196 3 0.02
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (195 bp):
ACTACATATGAATGAATGACGACAATAATTTATATTTGAATCCTATAAATTAAATAAACTATATG
ACCCATCTTGACAAAACACATGTAATAATAAGAACAACATAAAAACAAATGAAGACGATGGTTTG
TATTTTAACACTAAAAATCAAATCAATTATATGATCGATCTTCACAAACATGAGTAATATTGATT
Found at i:26214778 original size:60 final size:60
Alignment explanation
Indices: 26214676--26214789 Score: 174
Period size: 60 Copynumber: 1.9 Consensus size: 60
26214666 GCTATGATTT
* *
26214676 TGCATGGTGCCATTTACGTGAAACAGAAGATTAGGTAACTGGAATTTTGGGTCTTTTTAG
1 TGCATGGTGCCATTTACGTGAAACAGAAGATCAGGCAACTGGAATTTTGGGTCTTTTTAG
* * * *
26214736 TGCATGGTGCCATTTATGTGAAATAGAAGATCATGCAGCTGGAATTTTGGGTCT
1 TGCATGGTGCCATTTACGTGAAACAGAAGATCAGGCAACTGGAATTTTGGGTCT
26214790 CTGTATTGGG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 48 1.00
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.34
Consensus pattern (60 bp):
TGCATGGTGCCATTTACGTGAAACAGAAGATCAGGCAACTGGAATTTTGGGTCTTTTTAG
Found at i:26215908 original size:26 final size:26
Alignment explanation
Indices: 26215872--26215921 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
26215862 TTTTGGACAT
26215872 ATTCATAACCAAATATGTGATTTTAA
1 ATTCATAACCAAATATGTGATTTTAA
*
26215898 ATTCATAACCATATATGTGATTTT
1 ATTCATAACCAAATATGTGATTTT
26215922 GGACAACTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (26 bp):
ATTCATAACCAAATATGTGATTTTAA
Found at i:26216023 original size:13 final size:13
Alignment explanation
Indices: 26215979--26216025 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
26215969 ATTAAACGAA
26215979 AATGTTACCAAAT
1 AATGTTACCAAAT
* * *
26215992 AACTATTA-AAAAA
1 AA-TGTTACCAAAT
26216005 AATGTTACCAAAT
1 AATGTTACCAAAT
26216018 AATGTTAC
1 AATGTTAC
26216026 AATTGATTGG
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
12 4 0.15
13 18 0.69
14 4 0.15
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.30
Consensus pattern (13 bp):
AATGTTACCAAAT
Found at i:26218249 original size:17 final size:17
Alignment explanation
Indices: 26218227--26218266 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
26218217 TTAGGTCGTA
26218227 TGGGCCACAC-AGGCGTG
1 TGGGCCACACGA-GCGTG
26218244 TGGGCCACACGAGCGTG
1 TGGGCCACACGAGCGTG
26218261 TGGGCC
1 TGGGCC
26218267 TACATGGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 21 0.95
18 1 0.05
ACGTcount: A:0.15, C:0.30, G:0.42, T:0.12
Consensus pattern (17 bp):
TGGGCCACACGAGCGTG
Found at i:26219248 original size:28 final size:28
Alignment explanation
Indices: 26219209--26219278 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
26219199 ACATGCAGTA
* * *
26219209 ACAGT-ACAGTGTGGGCCTTAGCCCGAT
1 ACAGTAACAGTGTGAGACTTAGCCCAAT
*
26219236 ACAGTAACAGTGTGAGATTTAGCCCAAT
1 ACAGTAACAGTGTGAGACTTAGCCCAAT
*
26219264 ACAATAACAGTGTGA
1 ACAGTAACAGTGTGA
26219279 TAATGCAACC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 5 0.14
28 32 0.86
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (28 bp):
ACAGTAACAGTGTGAGACTTAGCCCAAT
Found at i:26219632 original size:27 final size:26
Alignment explanation
Indices: 26219602--26219905 Score: 256
Period size: 27 Copynumber: 11.4 Consensus size: 26
26219592 TCGACTCCTA
**
26219602 GGGGTATAACAGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCT-TG
26219629 GGGGTATTTCAGTCATTTTACCCTTTG
1 GGGGTATTTCAGTCATTTTACCC-TTG
26219656 GGGGTATTTCAGTCATTTTACCCTTCG
1 GGGGTATTTCAGTCATTTTACCCTT-G
* *
26219683 GGGGTATTTCGGTCATTTTACCCTTTA
1 GGGGTATTTCAGTCATTTTACCC-TTG
** * *
26219710 GAAGTA-TTCTGGTCA-TTTACCTTTTG
1 GGGGTATTTC-AGTCATTTTACC-CTTG
26219736 GGGGTATTTCAGTCATTTTACCCTTCG
1 GGGGTATTTCAGTCATTTTACCCTT-G
* * *
26219763 GAGGTATTTCGGTCATTTTACCCTTTA
1 GGGGTATTTCAGTCATTTTACCC-TTG
** * * *
26219790 GGGGTATTTTGGTCA-TTGACCTGTTA
1 GGGGTATTTCAGTCATTTTACC-CTTG
* * *
26219816 TGGGTATTTCGGTCATTTTACCTTTTG
1 GGGGTATTTCAGTCATTTTACC-CTTG
* * * **
26219843 GGGGTATTTTAATCACTTTACATTTTG
1 GGGGTATTTCAGTCATTTTAC-CCTTG
26219870 GGGGTATTTCAGTCA-TTTACCCTTTG
1 GGGGTATTTCAGTCATTTTACCC-TTG
26219896 GGGGTATTTC
1 GGGGTATTTC
26219906 GGGCTTACCA
Statistics
Matches: 230, Mismatches: 34, Indels: 27
0.79 0.12 0.09
Matches are distributed among these distances:
26 62 0.27
27 163 0.71
28 5 0.02
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (26 bp):
GGGGTATTTCAGTCATTTTACCCTTG
Found at i:26219749 original size:107 final size:107
Alignment explanation
Indices: 26219613--26219907 Score: 384
Period size: 107 Copynumber: 2.8 Consensus size: 107
26219603 GGGTATAACA
* *
26219613 GTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTTTGGGGGTATTTCAGTCATTTTACC
1 GTCATTTTACCTTTTGGGGGTATTTCAGTCATTTTACCCTTTGGGGGTATTTCAGTCATTTTACC
* *
26219678 CTTCGGGGGTATTTCGGTCATTTTACCCT-TTA-GAAGTA-TTCTG
66 CTTTGGGGGTATTTCGGTCA-TTGA-CCTGTTATG-AGTATTTC-G
* * *
26219721 GTCA-TTTACCTTTTGGGGGTATTTCAGTCATTTTACCCTTCGGAGGTATTTCGGTCATTTTACC
1 GTCATTTTACCTTTTGGGGGTATTTCAGTCATTTTACCCTTTGGGGGTATTTCAGTCATTTTACC
* * *
26219785 CTTTAGGGGTATTTTGGTCATTGACCTGTTATGGGTATTTCG
66 CTTTGGGGGTATTTCGGTCATTGACCTGTTATGAGTATTTCG
* * * **
26219827 GTCATTTTACCTTTTGGGGGTATTTTAATCACTTTACATTTTGGGGGTATTTCAGTCA-TTTACC
1 GTCATTTTACCTTTTGGGGGTATTTCAGTCATTTTACCCTTTGGGGGTATTTCAGTCATTTTACC
26219891 CTTTGGGGGTATTTCGG
66 CTTTGGGGGTATTTCGG
26219908 GCTTACCACT
Statistics
Matches: 163, Mismatches: 20, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
105 3 0.02
106 35 0.21
107 121 0.74
108 4 0.02
ACGTcount: A:0.16, C:0.17, G:0.23, T:0.44
Consensus pattern (107 bp):
GTCATTTTACCTTTTGGGGGTATTTCAGTCATTTTACCCTTTGGGGGTATTTCAGTCATTTTACC
CTTTGGGGGTATTTCGGTCATTGACCTGTTATGAGTATTTCG
Found at i:26219907 original size:80 final size:80
Alignment explanation
Indices: 26219613--26219905 Score: 347
Period size: 80 Copynumber: 3.6 Consensus size: 80
26219603 GGGTATAACA
* *
26219613 GTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTTTGGGGGTATTTCAGTCATTTTACC
1 GTCATTTTACCCTTTAGGGGTATTTCAGTCA-TTTACCCTTTGGGGGTATTTCAGTCATTTTACC
26219678 CTTCGGGGGTATTTCG
65 CTTCGGGGGTATTTCG
** * *
26219694 GTCATTTTACCCTTTAGAAGTA-TTCTGGTCATTTACCTTTTGGGGGTATTTCAGTCATTTTACC
1 GTCATTTTACCCTTTAGGGGTATTTC-AGTCATTTACCCTTTGGGGGTATTTCAGTCATTTTACC
*
26219758 CTTCGGAGGTATTTCG
65 CTTCGGGGGTATTTCG
** * ** *
26219774 GTCATTTTACCCTTTAGGGGTATTTTGGTCATTGA-CCTGTTATGGGTATTTCGGTCATTTTACC
1 GTCATTTTACCCTTTAGGGGTATTTCAGTCATTTACCCT-TTGGGGGTATTTCAGTCATTTTACC
* * **
26219838 TTTTGGGGGTATTTTA
65 CTTCGGGGGTATTTCG
* * ** *
26219854 ATCACTTTACATTTTGGGGGTATTTCAGTCATTTACCCTTTGGGGGTATTTC
1 GTCATTTTACCCTTTAGGGGTATTTCAGTCATTTACCCTTTGGGGGTATTTC
26219906 GGGCTTACCA
Statistics
Matches: 178, Mismatches: 30, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
79 2 0.01
80 149 0.84
81 27 0.15
ACGTcount: A:0.16, C:0.17, G:0.22, T:0.44
Consensus pattern (80 bp):
GTCATTTTACCCTTTAGGGGTATTTCAGTCATTTACCCTTTGGGGGTATTTCAGTCATTTTACCC
TTCGGGGGTATTTCG
Found at i:26222462 original size:98 final size:96
Alignment explanation
Indices: 26222172--26222467 Score: 269
Period size: 98 Copynumber: 3.0 Consensus size: 96
26222162 ATTGATATTT
* * * *
26222172 ACAAAACCCATGTAATATTGAGAACTGCATAAGAATAAATAAAGACGATGGTTTGTATTTGAACT
1 ACAAAACACGTGTAATATTGAGAACTGCATAAGAATAAATGAAGACTATGGTTTGTATTT-AACT
26222237 CTAAAAATCAAATCAATTATACGATCGATCTTC
65 CTAAAAATCAAATCAATTATACGATC-ATCTTC
* * * * * * ** *
26222270 AC--AACACGAGTAATATTGATAACTACATATGAATACATGATGA-TAATAATTTATATTTTAAT
1 ACAAAACACGTGTAATATTGAGAACTGCATAAGAATAAATGAAGACT-ATGGTTTGTA-TTTAA-
* * **
26222332 CTCGT--AAATTAAATAAATTATAATATTCATCTTC
63 CTC-TAAAAATCAAATCAATTATACGA-TCATCTTC
* * * * *
26222366 ACAAAACACGTGTAATATTAAGCATTGCATAAGAGTAAATGAAGACTATGGTTTGTATATTAACA
1 ACAAAACACGTGTAATATTGAGAACTGCATAAGAATAAATGAAGACTATGGTTTGTAT-TTAACT
*
26222431 CTAAAAATCAAATCAATTATCCGATCAATCTTC
65 CTAAAAATCAAATCAATTATACGATC-ATCTTC
26222464 ACAA
1 ACAA
26222468 GTACGTGTAA
Statistics
Matches: 150, Mismatches: 36, Indels: 24
0.71 0.17 0.11
Matches are distributed among these distances:
96 66 0.44
97 13 0.09
98 70 0.47
99 1 0.01
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.31
Consensus pattern (96 bp):
ACAAAACACGTGTAATATTGAGAACTGCATAAGAATAAATGAAGACTATGGTTTGTATTTAACTC
TAAAAATCAAATCAATTATACGATCATCTTC
Found at i:26222580 original size:195 final size:194
Alignment explanation
Indices: 26222122--26222581 Score: 539
Period size: 194 Copynumber: 2.4 Consensus size: 194
26222112 CAATAATAAT
* * * * *
26222122 TAATTTCTATTTGAATCCTATAAATTAAATAAACTAT-ATGATTGATATTTACAAAACCCATGTA
1 TAATTTATATTTGAATCCCATAAATTAAATAAATTATAAT-ATTGATCTTTACAAAACACATGTA
* *
26222186 ATATTGAGAACTGCATAAGAATAAATAAAGACGATGGTTTGTATTTGAACTCTAAAAATCAAATC
65 ATATTAAGAACTGCATAAGAATAAATAAAGACGATGGTTTGTATTTGAACACTAAAAATCAAATC
* * ** * ** *
26222251 AATTATACGATCGATCTTCACAACACGAGTAATATTGATAACTACATATGAATACATGATGATAA
130 AATTATACGATCAATCTTCACAACACGAGTAACATAAAGAACTACATATGAATACATGAACACAA
* * * * * *
26222316 TAATTTATATTTTAATCTCGTAAATTAAATAAATTATAATATTCATCTTCACAAAACACGTGTAA
1 TAATTTATATTTGAATCCCATAAATTAAATAAATTATAATATTGATCTTTACAAAACACATGTAA
* * * * *
26222381 TATTAAGCATTGCATAAGAGTAAATGAAGACTATGGTTTGTATATT-AACACTAAAAATCAAATC
66 TATTAAGAACTGCATAAGAATAAATAAAGACGATGGTTTGTAT-TTGAACACTAAAAATCAAATC
* * * * * * *
26222445 AATTATCCGATCAATCTTCACAAGTACGTGTAACATAAAGAATTGCGTCTGAATGA-ATGAACAC
130 AATTATACGATCAATCTTCACAA-CACGAGTAACATAAAGAACTACATATGAAT-ACATGAACAC
26222509 AA
193 AA
* * *
26222511 TAATTTATATTTGAATCCCATAAATTAAATAAATTATAATATTGTTCTTTGCAAAACACATGCAA
1 TAATTTATATTTGAATCCCATAAATTAAATAAATTATAATATTGATCTTTACAAAACACATGTAA
26222576 TATTAA
66 TATTAA
26222582 AACACATGTA
Statistics
Matches: 220, Mismatches: 42, Indels: 7
0.82 0.16 0.03
Matches are distributed among these distances:
194 126 0.57
195 93 0.42
196 1 0.00
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (194 bp):
TAATTTATATTTGAATCCCATAAATTAAATAAATTATAATATTGATCTTTACAAAACACATGTAA
TATTAAGAACTGCATAAGAATAAATAAAGACGATGGTTTGTATTTGAACACTAAAAATCAAATCA
ATTATACGATCAATCTTCACAACACGAGTAACATAAAGAACTACATATGAATACATGAACACAA
Found at i:26224536 original size:36 final size:38
Alignment explanation
Indices: 26224491--26224577 Score: 106
Period size: 39 Copynumber: 2.3 Consensus size: 38
26224481 GGAGTTGTAA
* * * *
26224491 GTGACTATTCATCTATATCAC-TAAATGC-TAGGAGTT
1 GTGACTATTCATCTACATAACTTAAATACATAAGAGTT
*
26224527 GTGACTATTCATTTACATAACTTAAATACTATAAGAGTT
1 GTGACTATTCATCTACATAACTTAAATAC-ATAAGAGTT
26224566 GTGACTATTCAT
1 GTGACTATTCAT
26224578 GCATATGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
36 18 0.42
37 6 0.14
39 19 0.44
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (38 bp):
GTGACTATTCATCTACATAACTTAAATACATAAGAGTT
Found at i:26224636 original size:32 final size:32
Alignment explanation
Indices: 26224600--26224664 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
26224590 TTTTTCATCT
* *
26224600 TCAAGTCTCTTCGCATTATTAACTCTTCATAA
1 TCAAGTCTCTTCACATTAGTAACTCTTCATAA
* *
26224632 TCAAGTCTCTTCACATTCGTAACTTTTCATAA
1 TCAAGTCTCTTCACATTAGTAACTCTTCATAA
26224664 T
1 T
26224665 TTATTTTCTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (32 bp):
TCAAGTCTCTTCACATTAGTAACTCTTCATAA
Found at i:26229137 original size:32 final size:32
Alignment explanation
Indices: 26229101--26229164 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
26229091 ACTTTTTATC
* *
26229101 TTCAAGTCTCTTCGCATTATTAACTCTTCATA
1 TTCAAGTCTCTTCACATTAGTAACTCTTCATA
* *
26229133 TTCAAGTCTCTTCACATTCGTAACTTTTCATA
1 TTCAAGTCTCTTCACATTAGTAACTCTTCATA
26229165 ATTTATTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (32 bp):
TTCAAGTCTCTTCACATTAGTAACTCTTCATA
Found at i:26232664 original size:16 final size:17
Alignment explanation
Indices: 26232632--26232669 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
26232622 AAACATTAAT
26232632 ATTCATATCATTAAAAA
1 ATTCATATCATTAAAAA
*
26232649 ATTCATATCATAAAAAA
1 ATTCATATCATTAAAAA
26232666 ATTC
1 ATTC
26232670 GATAACACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (17 bp):
ATTCATATCATTAAAAA
Found at i:26235865 original size:3 final size:3
Alignment explanation
Indices: 26235857--26235896 Score: 62
Period size: 3 Copynumber: 13.0 Consensus size: 3
26235847 AGTATAGAGT
*
26235857 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TATA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
26235897 TGTACAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:26238959 original size:28 final size:28
Alignment explanation
Indices: 26238922--26238978 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
26238912 TGAAACTTAT
26238922 TTGAATCAAGAAAAATGATCGTAAATTA
1 TTGAATCAAGAAAAATGATCGTAAATTA
26238950 TTGAATCAAGAAAAATGATCGTAAATTA
1 TTGAATCAAGAAAAATGATCGTAAATTA
26238978 T
1 T
26238979 GGTAATAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.49, C:0.07, G:0.14, T:0.30
Consensus pattern (28 bp):
TTGAATCAAGAAAAATGATCGTAAATTA
Found at i:26241673 original size:52 final size:52
Alignment explanation
Indices: 26241595--26241698 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
26241585 TCGCTCCCAA
26241595 ATGCTCTCCTAAGTATAGAAACATAAATTTAAAGGATTAGGAGCATCAAGTT
1 ATGCTCTCCTAAGTATAGAAACATAAATTTAAAGGATTAGGAGCATCAAGTT
26241647 ATGCTCTCCTAAGTATAGAAACATAAATTTAAAGGATTAGGAGCATCAAGTT
1 ATGCTCTCCTAAGTATAGAAACATAAATTTAAAGGATTAGGAGCATCAAGTT
26241699 CACTAATTTG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (52 bp):
ATGCTCTCCTAAGTATAGAAACATAAATTTAAAGGATTAGGAGCATCAAGTT
Found at i:26243315 original size:32 final size:33
Alignment explanation
Indices: 26243258--26243322 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
26243248 TCTGAGAAAA
*
26243258 CTAATAAGAAAATAAAAAAATAGTGAAGAAGAT
1 CTAATAAGAAAATAAAAAAACAGTGAAGAAGAT
*
26243291 CTAATAAGAACAT-AAAAAACAGTGAAGAAGAT
1 CTAATAAGAAAATAAAAAAACAGTGAAGAAGAT
26243323 TAAAAGGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.60
33 12 0.40
ACGTcount: A:0.62, C:0.06, G:0.15, T:0.17
Consensus pattern (33 bp):
CTAATAAGAAAATAAAAAAACAGTGAAGAAGAT
Found at i:26248683 original size:24 final size:23
Alignment explanation
Indices: 26248652--26248696 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
26248642 TATACATACC
* *
26248652 TTATTATATATCTTTATATCTTA
1 TTATTATATATATCTATATCTTA
26248675 TTATGTATATATATCTATATCT
1 TTAT-TATATATATCTATATCT
26248697 CTTTTTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (23 bp):
TTATTATATATATCTATATCTTA
Found at i:26250912 original size:24 final size:23
Alignment explanation
Indices: 26250881--26250926 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
26250871 TATACATACC
*
26250881 TTATTATATATCTTTATATCTTA
1 TTATTATATATCTATATATCTTA
*
26250904 TTATGTATATATCTATATCTCTT
1 TTAT-TATATATCTATATATCTT
26250927 TTTAAATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.59
Consensus pattern (23 bp):
TTATTATATATCTATATATCTTA
Found at i:26251254 original size:19 final size:19
Alignment explanation
Indices: 26251221--26251281 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
26251211 TATTTTTATA
*
26251221 TATATATTT-ATATATTCTT
1 TATATATTTAAAATATT-TT
26251240 TATAT-TTTAAAATATATTT
1 TATATATTTAAAATAT-TTT
* *
26251259 TATATATTTTATATATTTT
1 TATATATTTAAAATATTTT
26251278 TATA
1 TATA
26251282 ATTCACATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
18 3 0.08
19 24 0.67
20 9 0.25
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (19 bp):
TATATATTTAAAATATTTT
Found at i:26251254 original size:21 final size:21
Alignment explanation
Indices: 26251230--26251281 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
26251220 ATATATATTT
26251230 ATATATTCTT-TATATTTTAAA
1 ATATATT-TTATATATTTTAAA
*
26251251 ATATATTTTATATATTTT-AT
1 ATATATTTTATATATTTTAAA
26251271 ATAT-TTTTATA
1 ATATATTTTATA
26251282 ATTCACATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 7 0.24
20 7 0.24
21 15 0.52
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
ATATATTTTATATATTTTAAA
Found at i:26251367 original size:21 final size:21
Alignment explanation
Indices: 26251343--26251383 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26251333 TCTTTACATT
26251343 TTTTATTGT-ATTCATTATTTA
1 TTTTATTGTCATT-ATTATTTA
*
26251364 TTTTATTTTCATTATTATTT
1 TTTTATTGTCATTATTATTT
26251384 TGAATGAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (21 bp):
TTTTATTGTCATTATTATTTA
Found at i:26255898 original size:16 final size:16
Alignment explanation
Indices: 26255869--26255910 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
26255859 TACATAATAT
* *
26255869 ATTATTAATTAATAAA
1 ATTATAAATCAATAAA
26255885 ATTATAAATCAATAAA
1 ATTATAAATCAATAAA
26255901 ATTATTAAAT
1 ATTA-TAAAT
26255911 ATAACTGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
ATTATAAATCAATAAA
Found at i:26255977 original size:15 final size:15
Alignment explanation
Indices: 26255965--26255994 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26255955 AATATAATTT
26255965 TGTAATAATTAATAA
1 TGTAATAATTAATAA
*
26255980 TGTTATAATTAATAA
1 TGTAATAATTAATAA
26255995 AAATTAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (15 bp):
TGTAATAATTAATAA
Found at i:26260981 original size:19 final size:19
Alignment explanation
Indices: 26260941--26260984 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
26260931 TCCTCAACTC
*
26260941 ATTGTGATTCTTTTTTTCT
1 ATTGTGATTCTTTGTTTCT
*
26260960 ATTGTGATTGTTATGTTT-T
1 ATTGTGATTCTT-TGTTTCT
26260979 ATTGTG
1 ATTGTG
26260985 GGATGCATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.14, C:0.05, G:0.18, T:0.64
Consensus pattern (19 bp):
ATTGTGATTCTTTGTTTCT
Found at i:26264036 original size:21 final size:22
Alignment explanation
Indices: 26263993--26264043 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
26263983 ATATAAATAA
*
26263993 AATAATAAATATGTAATTATAT
1 AATAATAAATATATAATTATAT
* *
26264015 AATAA-AAATATATATTTTTAT
1 AATAATAAATATATAATTATAT
26264036 ATATAATA
1 A-ATAATA
26264044 TTTTTAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 14 0.58
22 9 0.38
23 1 0.04
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATAATAAATATATAATTATAT
Found at i:26264045 original size:86 final size:86
Alignment explanation
Indices: 26263921--26264078 Score: 241
Period size: 86 Copynumber: 1.8 Consensus size: 86
26263911 ATGTTTGAGC
* *
26263921 AATTAATAATTAATAAATATATTTTTTTTAATTCATATTTTTAATTAATAACTCTTTTATTTATA
1 AATTAATAATTAATAAATATATTTTTTATAATTAATATTTTTAATTAATAACTCTTTTATTTATA
26263986 TAAATAAAATAATAAATATGT
66 TAAATAAAATAATAAATATGT
26264007 AATTATATAA-TAA-AAATATATATTTTTAT-ATATAATATTTTTAATTAATAACTCTTTTATTT
1 AATTA-ATAATTAATAAATATAT-TTTTTATAAT-TAATATTTTTAATTAATAACTCTTTTATTT
*
26264069 ATATATATAA
63 ATATAAATAA
26264079 TAAAAATTAA
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
85 10 0.15
86 52 0.79
87 4 0.06
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.51
Consensus pattern (86 bp):
AATTAATAATTAATAAATATATTTTTTATAATTAATATTTTTAATTAATAACTCTTTTATTTATA
TAAATAAAATAATAAATATGT
Found at i:26264745 original size:40 final size:41
Alignment explanation
Indices: 26264661--26264747 Score: 106
Period size: 40 Copynumber: 2.1 Consensus size: 41
26264651 TGTAGGGCGT
* * *
26264661 GTTTTTAAACAAGTCAAGAGAAAACGCTTCCTGCAGGACGC
1 GTTTTCAAACAAGTCAAGAGAAAACGCTTCCTACAGGACAC
* *
26264702 GTTTTCAAACAAGTC-AGCA-AAAATGCTTCCTATAGGACAC
1 GTTTTCAAACAAGTCAAG-AGAAAACGCTTCCTACAGGACAC
26264742 GTTTTC
1 GTTTTC
26264748 TGTTTCCCTC
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
40 25 0.62
41 15 0.38
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.26
Consensus pattern (41 bp):
GTTTTCAAACAAGTCAAGAGAAAACGCTTCCTACAGGACAC
Found at i:26267431 original size:22 final size:23
Alignment explanation
Indices: 26267394--26267438 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
26267384 TAATTTATGG
26267394 CTCACATGCAATATACATTCTTGA
1 CTCACAT-CAATATACATTCTTGA
26267418 CTCACAT-AATATACATTCTTG
1 CTCACATCAATATACATTCTTG
26267439 CCTTGCATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 14 0.67
24 7 0.33
ACGTcount: A:0.33, C:0.24, G:0.07, T:0.36
Consensus pattern (23 bp):
CTCACATCAATATACATTCTTGA
Found at i:26267447 original size:22 final size:22
Alignment explanation
Indices: 26267403--26267474 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 22
26267393 GCTCACATGC
**
26267403 AATATACATTCTTGACTCACAT
1 AATATACATTCTTGACTTGCAT
*
26267425 AATATACATTCTTGCCTTGCAT
1 AATATACATTCTTGACTTGCAT
* * *
26267447 AGTACAC-TTACTTGACTTGCAA
1 AATATACATT-CTTGACTTGCAT
26267469 AATATA
1 AATATA
26267475 GTGGTTTGCA
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
21 2 0.05
22 38 0.95
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (22 bp):
AATATACATTCTTGACTTGCAT
Found at i:26267577 original size:22 final size:22
Alignment explanation
Indices: 26267494--26267584 Score: 67
Period size: 22 Copynumber: 4.0 Consensus size: 22
26267484 ATGTAATTCA
* *
26267494 TGACTTGCATAAAGTATACATTCT
1 TGACTTGCAT-AA-TACACATACT
* * * *
26267518 TGAATCGCATAATATACATTCT
1 TGACTTGCATAATACACATACT
* * *
26267540 TG-CCTCCTATAGTACACATACT
1 TGACTTGC-ATAATACACATACT
26267562 TGACTTGCATAATACACATACT
1 TGACTTGCATAATACACATACT
26267584 T
1 T
26267585 AACTCGTATA
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
21 1 0.02
22 39 0.74
23 5 0.09
24 8 0.15
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (22 bp):
TGACTTGCATAATACACATACT
Found at i:26267595 original size:22 final size:22
Alignment explanation
Indices: 26267547--26267597 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
26267537 TCTTGCCTCC
* * *
26267547 TATAGTACACATACTTGACTTG
1 TATAATACACATACTTAACTCG
*
26267569 CATAATACACATACTTAACTCG
1 TATAATACACATACTTAACTCG
26267591 TATAATA
1 TATAATA
26267598 TAGTGGTTCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (22 bp):
TATAATACACATACTTAACTCG
Found at i:26267635 original size:103 final size:103
Alignment explanation
Indices: 26267528--26267726 Score: 292
Period size: 103 Copynumber: 1.9 Consensus size: 103
26267518 TGAATCGCAT
* * * * * *
26267528 AATATACATTCTTGCCTCCT-ATAGTACACATACTTGACTTGCATAATACACATACTTAACTCGT
1 AATATACATTCTTG-ATCCTCATAATACACATACTTGACTCGCATAACACACATACCTAACTCGC
26267592 ATAATATAGTGGTTCACATGTAATTTATGACTTATATGC
65 ATAATATAGTGGTTCACATGTAATTTATGACTTATATGC
* * *
26267631 AATATACGTTCTTGATTCTCATAATACACATGCTTGACTCGCATAACACACATACCTAACTCGCA
1 AATATACATTCTTGATCCTCATAATACACATACTTGACTCGCATAACACACATACCTAACTCGCA
*
26267696 TAATATAGTGGTTCGCATGTAATTTATGACT
66 TAATATAGTGGTTCACATGTAATTTATGACT
26267727 CGCATGCAAT
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
102 3 0.04
103 82 0.96
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.35
Consensus pattern (103 bp):
AATATACATTCTTGATCCTCATAATACACATACTTGACTCGCATAACACACATACCTAACTCGCA
TAATATAGTGGTTCACATGTAATTTATGACTTATATGC
Found at i:26267637 original size:125 final size:125
Alignment explanation
Indices: 26267403--26267700 Score: 321
Period size: 125 Copynumber: 2.4 Consensus size: 125
26267393 GCTCACATGC
* * * * * * *
26267403 AATATACATTCTTGACTCACATAATATACATTCTTGCCTTGCATAGTACACTTACTTGACTTGCA
1 AATATACATTCTTGACTCACATAATACACATACTTGACTTGCATAATACACATACTTAACTCGCA
** *
26267468 AAATATAGTGGTTTGCATGTAATTCATGACTTGCATAAAGTATACATTCTTGAATCGCAT
66 AAATATAGTGGTTCACATGTAATTCATGACTTACATAAAGTATACATTCTTGAATCGCAT
* * *
26267528 AATATACATTCTTGCCTC-CTATAGTACACATACTTGACTTGCATAATACACATACTTAACTCGT
1 AATATACATTCTTGACTCAC-ATAATACACATACTTGACTTGCATAATACACATACTTAACTCGC
* * * * * * *
26267592 ATAATATAGTGGTTCACATGTAATTTATGACTTATATGCAA-TATACGTTCTTGATTCTCAT
65 AAAATATAGTGGTTCACATGTAATTCATGACTTACAT-AAAGTATACATTCTTGAATCGCAT
* * * * * * *
26267653 AATACACATGCTTGACTCGCATAACACACATACCTAACTCGCATAATA
1 AATATACATTCTTGACTCACATAATACACATACTTGACTTGCATAATA
26267701 TAGTGGTTCG
Statistics
Matches: 142, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
124 1 0.01
125 138 0.97
126 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.35
Consensus pattern (125 bp):
AATATACATTCTTGACTCACATAATACACATACTTGACTTGCATAATACACATACTTAACTCGCA
AAATATAGTGGTTCACATGTAATTCATGACTTACATAAAGTATACATTCTTGAATCGCAT
Found at i:26267666 original size:22 final size:22
Alignment explanation
Indices: 26267641--26267698 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
26267631 AATATACGTT
* * *
26267641 CTTGATTCTCATAATACACATG
1 CTTGACTCGCATAACACACATG
*
26267663 CTTGACTCGCATAACACACATA
1 CTTGACTCGCATAACACACATG
* *
26267685 CCTAACTCGCATAA
1 CTTGACTCGCATAA
26267699 TATAGTGGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.34, C:0.29, G:0.09, T:0.28
Consensus pattern (22 bp):
CTTGACTCGCATAACACACATG
Found at i:26267734 original size:103 final size:103
Alignment explanation
Indices: 26267552--26267748 Score: 304
Period size: 103 Copynumber: 1.9 Consensus size: 103
26267542 CCTCCTATAG
* * * *
26267552 TACACATACTTGACTTGCATAATACACATACTTAACTCGTATAATATAGTGGTTCACATGTAATT
1 TACACATACTTGACTCGCATAACACACATACCTAACTCGCATAATATAGTGGTTCACATGTAATT
* *
26267617 TATGACTTATATGCAATATACGTTCTTGATTCTCATAA
66 TATGACTCACATGCAATATACGTTCTTGATTCTCATAA
* *
26267655 TACACATGCTTGACTCGCATAACACACATACCTAACTCGCATAATATAGTGGTTCGCATGTAATT
1 TACACATACTTGACTCGCATAACACACATACCTAACTCGCATAATATAGTGGTTCACATGTAATT
* *
26267720 TATGACTCGCATGCAATATTCGTTCTTGA
66 TATGACTCACATGCAATATACGTTCTTGA
26267749 CTCGCAAATA
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
103 84 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (103 bp):
TACACATACTTGACTCGCATAACACACATACCTAACTCGCATAATATAGTGGTTCACATGTAATT
TATGACTCACATGCAATATACGTTCTTGATTCTCATAA
Found at i:26267938 original size:29 final size:29
Alignment explanation
Indices: 26267902--26268096 Score: 282
Period size: 29 Copynumber: 6.7 Consensus size: 29
26267892 CATGTTCACT
*
26267902 TATACTAGGGCTCGCACAACAACTTTACA
1 TATACTAGGGCTCGCACAACAGCTTTACA
* * *
26267931 TATACTAGTGCTCACACAATAGCTTTACA
1 TATACTAGGGCTCGCACAACAGCTTTACA
26267960 TATACTAGGGCTCGCACAACAGCTTTACA
1 TATACTAGGGCTCGCACAACAGCTTTACA
** * *
26267989 TATACTACTGCTCACACAATAGCTTTACA
1 TATACTAGGGCTCGCACAACAGCTTTACA
26268018 TATACTAGGGCTCGCACAACAGCTTTACA
1 TATACTAGGGCTCGCACAACAGCTTTACA
** * *
26268047 TATACTACTGCTCACACAATAGCTTTACA
1 TATACTAGGGCTCGCACAACAGCTTTACA
26268076 TATACTAGGGCTCGCACAACA
1 TATACTAGGGCTCGCACAACA
26268097 AGGCTTGCAC
Statistics
Matches: 143, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 143 1.00
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (29 bp):
TATACTAGGGCTCGCACAACAGCTTTACA
Found at i:26267972 original size:58 final size:58
Alignment explanation
Indices: 26267902--26268097 Score: 365
Period size: 58 Copynumber: 3.4 Consensus size: 58
26267892 CATGTTCACT
*
26267902 TATACTAGGGCTCGCACAACAACTTTACATATACTAGTGCTCACACAATAGCTTTACA
1 TATACTAGGGCTCGCACAACAACTTTACATATACTACTGCTCACACAATAGCTTTACA
*
26267960 TATACTAGGGCTCGCACAACAGCTTTACATATACTACTGCTCACACAATAGCTTTACA
1 TATACTAGGGCTCGCACAACAACTTTACATATACTACTGCTCACACAATAGCTTTACA
*
26268018 TATACTAGGGCTCGCACAACAGCTTTACATATACTACTGCTCACACAATAGCTTTACA
1 TATACTAGGGCTCGCACAACAACTTTACATATACTACTGCTCACACAATAGCTTTACA
26268076 TATACTAGGGCTCGCACAACAA
1 TATACTAGGGCTCGCACAACAA
26268098 GGCTTGCACA
Statistics
Matches: 135, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 135 1.00
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.27
Consensus pattern (58 bp):
TATACTAGGGCTCGCACAACAACTTTACATATACTACTGCTCACACAATAGCTTTACA
Found at i:26268094 original size:87 final size:87
Alignment explanation
Indices: 26267880--26268097 Score: 285
Period size: 87 Copynumber: 2.5 Consensus size: 87
26267870 CACACAATAG
* * *
26267880 GGCTCACACATACATG-TTCACTTATACTAGGGCTCGCACAACAACTTTACATATACTAGTGCTC
1 GGCTCACACA-ACA-GCTTTACATATACTAGGGCTCGCACAACAACTTTACATATACTAGGGCTC
* *
26267944 ACACAATAGCTTTACATATACTAG
64 ACACAACAGCTTTACATATACTAC
* ** * * * *
26267968 GGCTCGCACAACAGCTTTACATATACTACTGCTCACACAATAGCTTTACATATACTAGGGCTCGC
1 GGCTCACACAACAGCTTTACATATACTAGGGCTCGCACAACAACTTTACATATACTAGGGCTCAC
26268033 ACAACAGCTTTACATATACTAC
66 ACAACAGCTTTACATATACTAC
* *
26268055 TGCTCACACAATAGCTTTACATATACTAGGGCTCGCACAACAA
1 GGCTCACACAACAGCTTTACATATACTAGGGCTCGCACAACAA
26268098 GGCTTGCACA
Statistics
Matches: 109, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
86 1 0.01
87 99 0.91
88 9 0.08
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.27
Consensus pattern (87 bp):
GGCTCACACAACAGCTTTACATATACTAGGGCTCGCACAACAACTTTACATATACTAGGGCTCAC
ACAACAGCTTTACATATACTAC
Found at i:26275501 original size:20 final size:19
Alignment explanation
Indices: 26275455--26275501 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
26275445 TTTAATTTTT
26275455 AATTTT-TATATTTAAATA
1 AATTTTATATATTTAAATA
* * *
26275473 TAGTTTATATATTCTAATTA
1 AATTTTATATATT-TAAATA
26275493 AATTTTATA
1 AATTTTATA
26275502 AATAATTAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
18 4 0.18
19 6 0.27
20 12 0.55
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (19 bp):
AATTTTATATATTTAAATA
Found at i:26275749 original size:13 final size:13
Alignment explanation
Indices: 26275728--26275791 Score: 92
Period size: 13 Copynumber: 4.9 Consensus size: 13
26275718 ACACTCAAAT
*
26275728 TTCTTAAAAGCAC
1 TTCTCAAAAGCAC
*
26275741 TTCTCAAAAACAC
1 TTCTCAAAAGCAC
* *
26275754 TTTTGAAAAGCAC
1 TTCTCAAAAGCAC
26275767 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
26275780 TTCTCAAAAGCA
1 TTCTCAAAAGCA
26275792 ATGAAGAACT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 44 1.00
ACGTcount: A:0.41, C:0.25, G:0.08, T:0.27
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:26281867 original size:27 final size:28
Alignment explanation
Indices: 26281828--26281886 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 28
26281818 TTGTAAATGG
* *
26281828 TTTATTTTAAGTTATTTTGTATATT-AT
1 TTTATTTTAAGTTACTTTATATATTAAT
*
26281855 TTTATTTCT-AGTTGCTTTATATATTAAT
1 TTTATTT-TAAGTTACTTTATATATTAAT
26281883 TTTA
1 TTTA
26281887 AAATTATTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.25, C:0.03, G:0.07, T:0.64
Consensus pattern (28 bp):
TTTATTTTAAGTTACTTTATATATTAAT
Found at i:26281959 original size:4 final size:4
Alignment explanation
Indices: 26281950--26281974 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
26281940 TTTCACGTAC
26281950 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
26281975 TATCACTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:26282324 original size:23 final size:23
Alignment explanation
Indices: 26282298--26282343 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
26282288 AATTTATTGT
26282298 TTATATTGATGATTTTAAATTTC
1 TTATATTGATGATTTTAAATTTC
26282321 TTATATTGATGATTTTAAATTTC
1 TTATATTGATGATTTTAAATTTC
26282344 CTTACTTACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57
Consensus pattern (23 bp):
TTATATTGATGATTTTAAATTTC
Found at i:26287163 original size:20 final size:19
Alignment explanation
Indices: 26287138--26287207 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
26287128 TTATAAAAAC
26287138 ATTCAAAATAATTTTCACAA
1 ATTCAAAATAATTTTCA-AA
* *
26287158 ATTCAATATAATTTTTAAA
1 ATTCAAAATAATTTTCAAA
*
26287177 ATTCAAAAT-ATTTATAAAA
1 ATTCAAAATAATTT-TCAAA
*
26287196 ATTTAAAA-AATT
1 ATTCAAAATAATT
26287208 CTAAAGAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
18 4 0.09
19 24 0.56
20 15 0.35
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (19 bp):
ATTCAAAATAATTTTCAAA
Found at i:26287180 original size:19 final size:19
Alignment explanation
Indices: 26287138--26287195 Score: 73
Period size: 20 Copynumber: 3.1 Consensus size: 19
26287128 TTATAAAAAC
*
26287138 ATTCAAAATAATTTTCACAA
1 ATTCAAAATAATTTTTA-AA
*
26287158 ATTCAATATAATTTTTAAA
1 ATTCAAAATAATTTTTAAA
*
26287177 ATTCAAAAT-ATTTATAAA
1 ATTCAAAATAATTTTTAAA
26287195 A
1 A
26287196 ATTTAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.26
19 10 0.29
20 15 0.44
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.40
Consensus pattern (19 bp):
ATTCAAAATAATTTTTAAA
Found at i:26287198 original size:19 final size:20
Alignment explanation
Indices: 26287126--26287196 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
26287116 TCCTAACAAA
*
26287126 AATTATAAAAACATTCAAAAT
1 AATTTTAAAAA-ATTCAAAAT
* * *
26287147 AATTTTCACAAATTCAATAT
1 AATTTTAAAAAATTCAAAAT
*
26287167 AATTTT-TAAAATTCAAAAT
1 AATTTTAAAAAATTCAAAAT
26287186 -ATTTATAAAAA
1 AATTT-TAAAAA
26287197 TTTAAAAAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
18 4 0.10
19 11 0.28
20 17 0.43
21 8 0.20
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (20 bp):
AATTTTAAAAAATTCAAAAT
Found at i:26288569 original size:144 final size:144
Alignment explanation
Indices: 26288385--26288675 Score: 530
Period size: 144 Copynumber: 2.0 Consensus size: 144
26288375 CAAGTTTTCA
*
26288385 GTATCAAATGTGTTCCATATGATGGCCCAATTACAAAAGATATCCCCTATTCAAGTATATCCAAA
1 GTATCAAATGTGTTCCATATGATGACCCAATTACAAAAGATATCCCCTATTCAAGTATATCCAAA
26288450 -AGAACACTTTCAGTTTTGCAACTAAATACAAAAAAGTTGTAAAGTAAAAGAAGTTGCAAATGAA
66 GA-AACACTTTCAGTTTTGCAACTAAATACAAAAAAGTTGTAAAGTAAAAGAAGTTGCAAATGAA
26288514 AGTATTCTAAAGTTT
130 AGTATTCTAAAGTTT
*
26288529 GTATCAAATGTGTTCCATATGATGACCTAATTACAAAAGATATCCCCTATTCAAGTATATCCAAA
1 GTATCAAATGTGTTCCATATGATGACCCAATTACAAAAGATATCCCCTATTCAAGTATATCCAAA
*
26288594 GAAACACTTTCAGTTTTGCAACTAAATACAAAAAAGTTGTAAAGTAGAAGAAGTTGCAAATGAAA
66 GAAACACTTTCAGTTTTGCAACTAAATACAAAAAAGTTGTAAAGTAAAAGAAGTTGCAAATGAAA
*
26288659 GTGTTCTAAAGTTT
131 GTATTCTAAAGTTT
26288673 GTA
1 GTA
26288676 AAACTTTGTA
Statistics
Matches: 142, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
144 141 0.99
145 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (144 bp):
GTATCAAATGTGTTCCATATGATGACCCAATTACAAAAGATATCCCCTATTCAAGTATATCCAAA
GAAACACTTTCAGTTTTGCAACTAAATACAAAAAAGTTGTAAAGTAAAAGAAGTTGCAAATGAAA
GTATTCTAAAGTTT
Found at i:26292742 original size:49 final size:48
Alignment explanation
Indices: 26292584--26292767 Score: 149
Period size: 49 Copynumber: 3.8 Consensus size: 48
26292574 GGTATCCAGA
* *
26292584 TATGA-AGAGCCACTAGTAGGGCATGTTAGTTGCAAACCAGAATGGCAAA
1 TATGATAG-GCCACTAGTAGGGCATGTTAGTTGCTAACCAGAATGGC-AG
* * * * * * *
26292633 TGTGCTAGACTACT-GATAGGGCATGCTAGTTGCTAACCAG-GTGGGAG
1 TATGATAGGCCACTAG-TAGGGCATGTTAGTTGCTAACCAGAATGGCAG
* * *
26292680 AATATGATAGGCCACTGGTAGGGCATATTAGTTGCTAACCAGATTGGCATG
1 --TATGATAGGCCACTAGTAGGGCATGTTAGTTGCTAACCAGAATGGCA-G
* * * *
26292731 TATGTTGGGCCACTAGTAGGACATGTTAGTTGTTAAC
1 TATGATAGGCCACTAGTAGGGCATGTTAGTTGCTAAC
26292768 TAGGTTGATG
Statistics
Matches: 105, Mismatches: 23, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 92 0.88
50 7 0.07
51 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (48 bp):
TATGATAGGCCACTAGTAGGGCATGTTAGTTGCTAACCAGAATGGCAG
Found at i:26292761 original size:98 final size:98
Alignment explanation
Indices: 26292583--26292772 Score: 213
Period size: 98 Copynumber: 1.9 Consensus size: 98
26292573 CGGTATCCAG
* * *
26292583 ATATGAAGAGCCACTAGTAGGGCATGTTAGTTGCAAACCAGAATGGCAAATGTGCTAGACTACTG
1 ATATGAAGAGCCACTAGTAGGGCATATTAGTTGCAAACCAGAATGGCAAATATGCTAGACCACTG
*
26292648 ATAGGGCATGCTAGTTGCTAACCAGGTGGGAGA
66 ATAGGACATGCTAGTTGCTAACCAGGTGGGAGA
* * * ** * * *
26292681 ATATGATAG-GCCACTGGTAGGGCATATTAGTTGCTAACCAGATTGGCATGTATGTTGGGCCACT
1 ATATGA-AGAGCCACTAGTAGGGCATATTAGTTGCAAACCAGAATGGCAAATATGCTAGACCACT
* * *
26292745 -AGTAGGACATGTTAGTTGTTAACTAGGT
65 GA-TAGGACATGCTAGTTGCTAACCAGGT
26292773 TGATGGCCAC
Statistics
Matches: 75, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
97 1 0.01
98 72 0.96
99 2 0.03
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (98 bp):
ATATGAAGAGCCACTAGTAGGGCATATTAGTTGCAAACCAGAATGGCAAATATGCTAGACCACTG
ATAGGACATGCTAGTTGCTAACCAGGTGGGAGA
Found at i:26293095 original size:48 final size:48
Alignment explanation
Indices: 26293017--26293145 Score: 204
Period size: 48 Copynumber: 2.7 Consensus size: 48
26293007 AAGAAATGAT
* * *
26293017 TTGAAAAGAGTAAGTTAATATCAATTTGTATGTGATATATGTTATGTA
1 TTGAAAAGAGTAAGTTAATATGACTCTGTATGTGATATATGTTATGTA
* *
26293065 TTGAAAAGGGTAAGTTAATATGACTCTGTATATGATATATGTTATGTA
1 TTGAAAAGAGTAAGTTAATATGACTCTGTATGTGATATATGTTATGTA
*
26293113 TTGAAAAGAGTAAGTTAATATGACTCTATATGT
1 TTGAAAAGAGTAAGTTAATATGACTCTGTATGT
26293146 TTTGAATGTT
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.37, C:0.04, G:0.19, T:0.40
Consensus pattern (48 bp):
TTGAAAAGAGTAAGTTAATATGACTCTGTATGTGATATATGTTATGTA
Found at i:26293155 original size:48 final size:47
Alignment explanation
Indices: 26293017--26293161 Score: 175
Period size: 48 Copynumber: 3.0 Consensus size: 47
26293007 AAGAAATGAT
* * * * *
26293017 TTGAAAAGAGTAAGTTAATATCAATTTGTATGTGATATATGTTATGTA
1 TTGAAAAGAGTAAGTTAATATGACTCTATATGTTATA-ATGTTATGTA
* *
26293065 TTGAAAAGGGTAAGTTAATATGACTCTGTATATGATAT-ATGTTATGTA
1 TTGAAAAGAGTAAGTTAATATGACTC--TATATGTTATAATGTTATGTA
*
26293113 TTGAAAAGAGTAAGTTAATATGACTCTATATGTTTTGAATGTTATGTA
1 TTGAAAAGAGTAAGTTAATATGACTCTATATGTTAT-AATGTTATGTA
26293161 T
1 T
26293162 AATTACTGAC
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
46 8 0.10
48 68 0.82
50 7 0.08
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.41
Consensus pattern (47 bp):
TTGAAAAGAGTAAGTTAATATGACTCTATATGTTATAATGTTATGTA
Found at i:26300460 original size:15 final size:16
Alignment explanation
Indices: 26300435--26300470 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
26300425 TAAGTGAAAG
26300435 AAAATATTTTATGTTA
1 AAAATATTTTATGTTA
*
26300451 AAAATA-TTTATTTTA
1 AAAATATTTTATGTTA
26300466 AAAAT
1 AAAAT
26300471 TTATTTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
AAAATATTTTATGTTA
Found at i:26300474 original size:13 final size:14
Alignment explanation
Indices: 26300435--26300476 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
26300425 TAAGTGAAAG
*
26300435 AAAATATTTTATGTTA
1 AAAATA-TTTAT-TTT
26300451 AAAATATTTATTTT
1 AAAATATTTATTTT
26300465 AAAA-ATTTATTT
1 AAAATATTTATTT
26300477 AATAATGAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 8 0.32
14 6 0.24
15 5 0.20
16 6 0.24
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (14 bp):
AAAATATTTATTTT
Found at i:26301452 original size:9 final size:8
Alignment explanation
Indices: 26301429--26301454 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
26301419 TAATTAATTC
26301429 TTTAAAAA
1 TTTAAAAA
26301437 TTTAAAAA
1 TTTAAAAA
26301445 TTTAAAAA
1 TTTAAAAA
26301453 TT
1 TT
26301455 ATTTTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
TTTAAAAA
Found at i:26302139 original size:21 final size:20
Alignment explanation
Indices: 26302113--26302176 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 20
26302103 AATAATTTTC
26302113 AAAATTTTAAAACATTTATAA
1 AAAATTTTAAAA-ATTTATAA
*
26302134 AAAATTCTAAAGAATATT-TAAA
1 AAAATTTTAAA-AAT-TTAT-AA
*
26302156 AAAAATTTAAAAATTT-TAA
1 AAAATTTTAAAAATTTATAA
26302175 AA
1 AA
26302177 CTTTGCAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
19 4 0.11
20 3 0.08
21 16 0.43
22 14 0.38
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (20 bp):
AAAATTTTAAAAATTTATAA
Found at i:26302158 original size:23 final size:21
Alignment explanation
Indices: 26302113--26302176 Score: 76
Period size: 23 Copynumber: 3.0 Consensus size: 21
26302103 AATAATTTTC
* * *
26302113 AAAATTTTAAAACATTTATAA
1 AAAATTTAAAAATATTTAAAA
26302134 AAAATTCTAAAGAATATTTAAAA
1 AAAATT-TAAA-AATATTTAAAA
26302157 AAAATTTAAAAAT-TTTAAAA
1 AAAATTTAAAAATATTTAAAA
26302177 CTTTGCAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
20 7 0.18
21 9 0.24
22 7 0.18
23 15 0.39
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (21 bp):
AAAATTTAAAAATATTTAAAA
Found at i:26302163 original size:11 final size:11
Alignment explanation
Indices: 26302121--26302168 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
26302111 TCAAAATTTT
* *
26302121 AAAACATTTAT
1 AAAAAATTTAA
26302132 AAAAAATTCTAA
1 AAAAAATT-TAA
* *
26302144 AGAATATTTAA
1 AAAAAATTTAA
26302155 AAAAAATTTAA
1 AAAAAATTTAA
26302166 AAA
1 AAA
26302169 TTTTAAAACT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
11 22 0.73
12 8 0.27
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (11 bp):
AAAAAATTTAA
Found at i:26302173 original size:9 final size:9
Alignment explanation
Indices: 26302106--26302176 Score: 52
Period size: 9 Copynumber: 7.1 Consensus size: 9
26302096 AAAATAAAAT
*
26302106 AATTTTCAA
1 AATTTTAAA
26302115 AATTTTAAA
1 AATTTTAAA
26302124 ACATTTATAAAA
1 A-ATTT-T-AAA
*
26302136 AATTCTAAA
1 AATTTTAAA
26302145 GAATATTTAAAAA
1 -AAT-TTT--AAA
*
26302158 AAATTTAAA
1 AATTTTAAA
26302167 AATTTTAAA
1 AATTTTAAA
26302176 A
1 A
26302177 CTTTGCAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
9 24 0.48
10 8 0.16
11 9 0.18
12 6 0.12
13 3 0.06
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (9 bp):
AATTTTAAA
Found at i:26312581 original size:12 final size:12
Alignment explanation
Indices: 26312564--26312603 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
26312554 AGCAGATGCC
26312564 GCAGCGAGAGAA
1 GCAGCGAGAGAA
26312576 GCAGCGAGAGAA
1 GCAGCGAGAGAA
*
26312588 GCAGCGATAGAA
1 GCAGCGAGAGAA
26312600 GCAG
1 GCAG
26312604 AGGTTCAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.40, C:0.17, G:0.40, T:0.03
Consensus pattern (12 bp):
GCAGCGAGAGAA
Found at i:26313167 original size:42 final size:42
Alignment explanation
Indices: 26313071--26313254 Score: 226
Period size: 42 Copynumber: 4.3 Consensus size: 42
26313061 CTTTTTGAAC
* * * * * *
26313071 AAGCACCGCTATAGAACATTA-CTTTTAGAGGCGTTTTCTTCCA
1 AAGCGCCGCTAAAGAACATGATCTTTT-GCGGCGTTTT-TTTCT
* *
26313114 AAACGCCGCTAAAGAATATGATCTTTTGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTTGCGGCGTTTTTTTCT
26313156 AAGCGCCGCTAAAGAACATGATCTTTTGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTTGCGGCGTTTTTTTCT
* * *
26313198 AAGCGCTGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCTGT
1 AAGCGCCGCTAAAGAACATGATCTTTTGCGGCGTTTTTT-TCT
*
26313241 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
26313255 TTAGCGACGT
Statistics
Matches: 124, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
42 80 0.65
43 39 0.31
44 5 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGATCTTTTGCGGCGTTTTTTTCT
Found at i:26313189 original size:85 final size:85
Alignment explanation
Indices: 26313071--26313254 Score: 228
Period size: 85 Copynumber: 2.2 Consensus size: 85
26313061 CTTTTTGAAC
* * * *
26313071 AAGCACCGCTATAGAACATTACTTTTAGAGGCGTTTTCTTCCAAAACGCCGCTAAAGAATATGAT
1 AAGCGCCGCTAAAGAACATGACTTTTAGAGGCGTTTT-TTCCAAAACGCCGCTAAAGAACATGAT
*
26313136 CTTTTGCGGCGTTTTTT-TCT
65 CTTTAGCGGCGTTTTTTCTCT
* * * * *
26313156 AAGCGCCGCTAAAGAACATGATCTTTT-GCGGCGTTTTTTTCTAAGCGCTGCTAAAGAACATGAT
1 AAGCGCCGCTAAAGAACATGA-CTTTTAGAGGCGTTTTTTCCAAAACGCCGCTAAAGAACATGAT
*
26313220 CTTTAGCGGCGTTTTTTCTGT
65 CTTTAGCGGCGTTTTTTCTCT
*
26313241 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
26313255 TTAGCGACGT
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
84 38 0.45
85 42 0.49
86 5 0.06
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (85 bp):
AAGCGCCGCTAAAGAACATGACTTTTAGAGGCGTTTTTTCCAAAACGCCGCTAAAGAACATGATC
TTTAGCGGCGTTTTTTCTCT
Done.