Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 90 of 187
Found at i:26313357 original size:22 final size:22
Alignment explanation
Indices: 26313326--26313368 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26313316 TAGTGGCGTC
* *
26313326 AAAAAGCGCCGCTAAAGACTTA
1 AAAAAACGCCGCTAAAAACTTA
26313348 AAAAAACGCCGCTAAAAACTT
1 AAAAAACGCCGCTAAAAACTT
26313369 GTTCTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.23, G:0.14, T:0.14
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAAACTTA
Found at i:26315342 original size:249 final size:249
Alignment explanation
Indices: 26315039--26315536 Score: 951
Period size: 249 Copynumber: 2.0 Consensus size: 249
26315029 ATATATTCTT
26315039 TTACAGTAAAGTTGTCATGATTTGAACGTAATTAGAATCAGGTTAGGAAAATTATTTAATTGGAA
1 TTACAGTAAAGTTGTCATGATTTGAACGTAATTAGAATCAGGTTAGGAAAATTATTTAATTGGAA
26315104 AATTTAATTGATTTAAATTAAATTATAAATAATTTTTATTTTGAGAAATAAAAAAATATACTGGG
66 AATTTAATTGATTTAAATTAAATTATAAATAATTTTTATTTTGAGAAATAAAAAAATATACTGGG
* *
26315169 TTGAATTAAATTATAAAGTGATGAATTAAAAGTCTAAGAAACACATATAATTGGACCCAATACAA
131 TTGAATTAAATTATAAAGTGATGAACTAAAAGTCCAAGAAACACATATAATTGGACCCAATACAA
*
26315234 GAGAGGCTCGAATCCCCATCATAATACATATGAGGAGAGGCACACCCTAGTAGC
196 GAGAGGCTCGAATCCCCATCATAATACATATGAGGAGAGGCACACCCTAATAGC
26315288 TTACAGTAAAGTTGTCATGATTTGAACGTAATTAGAATCAGGTTAGGAAAATTATTTAATTGGAA
1 TTACAGTAAAGTTGTCATGATTTGAACGTAATTAGAATCAGGTTAGGAAAATTATTTAATTGGAA
26315353 AATTTAATTGATTTAAATTAAATTATAAATAATTTTTATTTTGAGAAATAAAAAAATATACTGGG
66 AATTTAATTGATTTAAATTAAATTATAAATAATTTTTATTTTGAGAAATAAAAAAATATACTGGG
*
26315418 TTGAATTAAATTATAAAGTGATGAACTAAAAGTCCAAGAAACACATATAATTGGACCCAATTCAA
131 TTGAATTAAATTATAAAGTGATGAACTAAAAGTCCAAGAAACACATATAATTGGACCCAATACAA
*
26315483 GAGAGGCTCGAATCCCCATCATAATGCATATGAGGAGAGGCACACCCTAATAGC
196 GAGAGGCTCGAATCCCCATCATAATACATATGAGGAGAGGCACACCCTAATAGC
26315537 CACCACTCTC
Statistics
Matches: 244, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
249 244 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (249 bp):
TTACAGTAAAGTTGTCATGATTTGAACGTAATTAGAATCAGGTTAGGAAAATTATTTAATTGGAA
AATTTAATTGATTTAAATTAAATTATAAATAATTTTTATTTTGAGAAATAAAAAAATATACTGGG
TTGAATTAAATTATAAAGTGATGAACTAAAAGTCCAAGAAACACATATAATTGGACCCAATACAA
GAGAGGCTCGAATCCCCATCATAATACATATGAGGAGAGGCACACCCTAATAGC
Found at i:26317302 original size:57 final size:58
Alignment explanation
Indices: 26317240--26317358 Score: 143
Period size: 57 Copynumber: 2.1 Consensus size: 58
26317230 TCATTTTCAT
** * *
26317240 TTTTCATTTTAATTTTAGAGGAAACCACATTCATTTCCAAATGATT-CC-ATTTCTCCA
1 TTTTCATTTTAATTTTAGAAAAAACCACAATAATTTCCAAAT-ATTCCCTATTTCTCCA
* * * *
26317297 TTTTCATTTTTATTTTGGAAAAAACCATAATAATTTCCAAATCTTCCCTATTTCTCCA
1 TTTTCATTTTAATTTTAGAAAAAACCACAATAATTTCCAAATATTCCCTATTTCTCCA
26317355 TTTT
1 TTTT
26317359 ACCATTTCTA
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
56 2 0.04
57 37 0.71
58 13 0.25
ACGTcount: A:0.29, C:0.20, G:0.05, T:0.45
Consensus pattern (58 bp):
TTTTCATTTTAATTTTAGAAAAAACCACAATAATTTCCAAATATTCCCTATTTCTCCA
Found at i:26319934 original size:49 final size:49
Alignment explanation
Indices: 26319881--26320037 Score: 137
Period size: 49 Copynumber: 3.2 Consensus size: 49
26319871 AGCCACTTAG
*
26319881 GATGGTAGAATATGAAAATAGTGAAAGCTATCGTTGT-TGGACCATCC-GA
1 GATGGTAGAATATGAAAATAGTGAAAGCTATCGTTGTCAGG-CCA-CCTGA
* * *
26319930 GATGGTGGAGAAT-TG-AAATAGTGAAAGCCATTGTTGTCAGGCCACCTGG
1 GATGGT--AGAATATGAAAATAGTGAAAGCTATCGTTGTCAGGCCACCTGA
* * * *
26319979 GATGGTAGAATATGAAAACAGTAAAAG-TCATCGTTG-CTAAGCCACCCGA
1 GATGGTAGAATATGAAAATAGTGAAAGCT-ATCGTTGTC-AGGCCACCTGA
*
26320028 GATGATAGAA
1 GATGGTAGAA
26320038 CATTCAAATT
Statistics
Matches: 88, Mismatches: 12, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
47 5 0.06
48 5 0.06
49 69 0.78
50 4 0.05
51 5 0.06
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (49 bp):
GATGGTAGAATATGAAAATAGTGAAAGCTATCGTTGTCAGGCCACCTGA
Found at i:26319955 original size:98 final size:98
Alignment explanation
Indices: 26319826--26320014 Score: 224
Period size: 98 Copynumber: 1.9 Consensus size: 98
26319816 TTTTCGGGTT
* *
26319826 ATCCAAGATGGTAGAAAATCGAAATACTGAAAGTCATCATT-TT-TTA-GCCACTTAGGATGGTA
1 ATCCAAGATGGTAGAAAATCGAAATACTGAAAG-C--CATTGTTGTCAGGCCACCTAGGATGGTA
* *
26319888 GAATATGAAAATAGTGAAAG-CTATCGTTGTTGGACC
63 GAATATGAAAACAGTAAAAGTC-ATCGTTGTTGGACC
* * * * * *
26319924 ATCCGAGATGGTGGAGAATTGAAATAGTGAAAGCCATTGTTGTCAGGCCACCTGGGATGGTAGAA
1 ATCCAAGATGGTAGAAAATCGAAATACTGAAAGCCATTGTTGTCAGGCCACCTAGGATGGTAGAA
26319989 TATGAAAACAGTAAAAGTCATCGTTG
66 TATGAAAACAGTAAAAGTCATCGTTG
26320015 CTAAGCCACC
Statistics
Matches: 77, Mismatches: 10, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
95 4 0.05
96 2 0.03
97 3 0.04
98 67 0.87
99 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.26
Consensus pattern (98 bp):
ATCCAAGATGGTAGAAAATCGAAATACTGAAAGCCATTGTTGTCAGGCCACCTAGGATGGTAGAA
TATGAAAACAGTAAAAGTCATCGTTGTTGGACC
Found at i:26323338 original size:20 final size:20
Alignment explanation
Indices: 26323295--26323339 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
26323285 TTGTTTAATC
* ** *
26323295 TTTTCTTTACCTAATTTTCT
1 TTTTATTTACCTAATTACCA
26323315 TTTTATTTACCTAATTACCA
1 TTTTATTTACCTAATTACCA
26323335 TTTTA
1 TTTTA
26323340 ACCTTATTGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.22, C:0.18, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTATTTACCTAATTACCA
Found at i:26325538 original size:87 final size:87
Alignment explanation
Indices: 26325392--26325565 Score: 330
Period size: 87 Copynumber: 2.0 Consensus size: 87
26325382 CTCATTATCA
*
26325392 TAGACAGTGAGTAGGGTCGAAAAATTATTAAAAGCATCAAAAGAAAAATTTTGGGAACATGAAAA
1 TAGACAGTGAGTAGGGCCGAAAAATTATTAAAAGCATCAAAAGAAAAATTTTGGGAACATGAAAA
26325457 TAAACTTGTAAAATAGGAAATT
66 TAAACTTGTAAAATAGGAAATT
*
26325479 TAGACAGTGAGTAGGGCCGAAAAATTATTAAAAGCATCAAAAGAAACATTTTGGGAACATGAAAA
1 TAGACAGTGAGTAGGGCCGAAAAATTATTAAAAGCATCAAAAGAAAAATTTTGGGAACATGAAAA
26325544 TAAACTTGTAAAATAGGAAATT
66 TAAACTTGTAAAATAGGAAATT
26325566 ACAGTACTAT
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 85 1.00
ACGTcount: A:0.49, C:0.08, G:0.20, T:0.24
Consensus pattern (87 bp):
TAGACAGTGAGTAGGGCCGAAAAATTATTAAAAGCATCAAAAGAAAAATTTTGGGAACATGAAAA
TAAACTTGTAAAATAGGAAATT
Found at i:26328153 original size:26 final size:26
Alignment explanation
Indices: 26328124--26328215 Score: 99
Period size: 23 Copynumber: 3.8 Consensus size: 26
26328114 ATCCTCTTTC
*
26328124 GAGCCATATAACAGGAAACTCACAAA
1 GAGCCATATAACAGGAAGCTCACAAA
*
26328150 GAGCTAT-TAATCAGGAAGCTCACAAA
1 GAGCCATATAA-CAGGAAGCTCACAAA
*
26328176 GAG-CATAT--CGGGAAGCTCACAAA
1 GAGCCATATAACAGGAAGCTCACAAA
26328199 GAGCC-TAT--CAGGAAGCT
1 GAGCCATATAACAGGAAGCT
26328216 TATCTGGGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
23 28 0.48
24 1 0.02
25 5 0.09
26 24 0.41
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.15
Consensus pattern (26 bp):
GAGCCATATAACAGGAAGCTCACAAA
Found at i:26328193 original size:23 final size:23
Alignment explanation
Indices: 26328135--26328215 Score: 108
Period size: 23 Copynumber: 3.4 Consensus size: 23
26328125 AGCCATATAA
*
26328135 CAGGAAACTCACAAAGAGCTATTAAT
1 CAGGAAGCTCACAAAGAGC-A-T-AT
26328161 CAGGAAGCTCACAAAGAGCATAT
1 CAGGAAGCTCACAAAGAGCATAT
* *
26328184 CGGGAAGCTCACAAAGAGCCTAT
1 CAGGAAGCTCACAAAGAGCATAT
26328207 CAGGAAGCT
1 CAGGAAGCT
26328216 TATCTGGGCT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
23 31 0.61
24 1 0.02
25 1 0.02
26 18 0.35
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.15
Consensus pattern (23 bp):
CAGGAAGCTCACAAAGAGCATAT
Found at i:26328305 original size:26 final size:26
Alignment explanation
Indices: 26328252--26328342 Score: 105
Period size: 26 Copynumber: 3.5 Consensus size: 26
26328242 ATAAGAGTCA
* * * *
26328252 TAATCAGGAAGTTCACAAAGAACTTT
1 TAATCAGGAAGCTCACGAAGAGCCTT
26328278 TAATCAGGAAGCTCACGAAGAGCCTT
1 TAATCAGGAAGCTCACGAAGAGCCTT
* *
26328304 TAAAT-GGGAAGCTCATGAAGAGCCTT
1 T-AATCAGGAAGCTCACGAAGAGCCTT
26328330 TAATCAGG-AGCTC
1 TAATCAGGAAGCTC
26328343 TGGATAGCCA
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
25 8 0.14
26 45 0.80
27 3 0.05
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (26 bp):
TAATCAGGAAGCTCACGAAGAGCCTT
Found at i:26328505 original size:64 final size:64
Alignment explanation
Indices: 26328399--26328527 Score: 204
Period size: 64 Copynumber: 2.0 Consensus size: 64
26328389 TTTGGAGAGC
* * * *
26328399 CATATAACAGGACGCTCATAAAGAGCTACGGTATGTCTGCAACACATGCAGGATCACTACCGAT
1 CATATAAAAGGACGCTCACAAAGAGCTACGGTATGTCCGCAACACATGCAGGATCACAACCGAT
* *
26328463 CATATAAAAGGACGCTCACAAAGAGTTACGGTATGTCCGCAACATATGCAGGATCACAACCGAT
1 CATATAAAAGGACGCTCACAAAGAGCTACGGTATGTCCGCAACACATGCAGGATCACAACCGAT
26328527 C
1 C
26328528 GGGGTGTTCG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.19
Consensus pattern (64 bp):
CATATAAAAGGACGCTCACAAAGAGCTACGGTATGTCCGCAACACATGCAGGATCACAACCGAT
Found at i:26330104 original size:71 final size:71
Alignment explanation
Indices: 26330021--26330155 Score: 270
Period size: 71 Copynumber: 1.9 Consensus size: 71
26330011 AATATTTTAA
26330021 TTTTTTTGTTATTTATTCTTGAAATTTTATTAAAATTATGGTGGAAAGTGTTATTAACCTACCAA
1 TTTTTTTGTTATTTATTCTTGAAATTTTATTAAAATTATGGTGGAAAGTGTTATTAACCTACCAA
26330086 AATTTT
66 AATTTT
26330092 TTTTTTTGTTATTTATTCTTGAAATTTTATTAAAATTATGGTGGAAAGTGTTATTAACCTACCA
1 TTTTTTTGTTATTTATTCTTGAAATTTTATTAAAATTATGGTGGAAAGTGTTATTAACCTACCA
26330156 TTGTTGATTA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 64 1.00
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.50
Consensus pattern (71 bp):
TTTTTTTGTTATTTATTCTTGAAATTTTATTAAAATTATGGTGGAAAGTGTTATTAACCTACCAA
AATTTT
Found at i:26331245 original size:21 final size:21
Alignment explanation
Indices: 26331219--26331294 Score: 93
Period size: 21 Copynumber: 3.7 Consensus size: 21
26331209 ATTTAAAGAT
26331219 TTTGAAAATTATATATAATTG
1 TTTGAAAATTATATATAATTG
*
26331240 TTTGAAAATTATAT-T-TTTG
1 TTTGAAAATTATATATAATTG
** *
26331259 AAGTGAATATTATATATAATTG
1 -TTTGAAAATTATATATAATTG
26331281 TTTGAAAATTATAT
1 TTTGAAAATTATAT
26331295 TTTTTTATTG
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
19 3 0.07
20 12 0.27
21 26 0.59
22 3 0.07
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.49
Consensus pattern (21 bp):
TTTGAAAATTATATATAATTG
Found at i:26331274 original size:41 final size:41
Alignment explanation
Indices: 26331221--26331298 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
26331211 TTAAAGATTT
26331221 TGAAAATTATATATAATTGTTTGAAAATTATATTTTTGAAG
1 TGAAAATTATATATAATTGTTTGAAAATTATATTTTTGAAG
*
26331262 TGAATATTATATATAATTGTTTGAAAATTATATTTTT
1 TGAAAATTATATATAATTGTTTGAAAATTATATTTTT
26331299 TTATTGACTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (41 bp):
TGAAAATTATATATAATTGTTTGAAAATTATATTTTTGAAG
Found at i:26335891 original size:23 final size:25
Alignment explanation
Indices: 26335847--26335892 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
26335837 TTTGGTGCAA
*
26335847 TTAACTCATTATTTTAATTTAAAAT
1 TTAACTCATTATTTTAAATTAAAAT
26335872 TTAA-TCATT-TTTTAAATTAAA
1 TTAACTCATTATTTTAAATTAAA
26335893 TCGAACCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 11 0.55
24 5 0.25
25 4 0.20
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (25 bp):
TTAACTCATTATTTTAAATTAAAAT
Found at i:26335948 original size:79 final size:79
Alignment explanation
Indices: 26335833--26335990 Score: 307
Period size: 79 Copynumber: 2.0 Consensus size: 79
26335823 ATAGTTTAGG
26335833 GATGTTTGGTGCAATTAACTCATTATTTTAATTTAAAATTTAATCATTTTTTAAATTAAATCGAA
1 GATGTTTGGTGCAATTAACTCATTATTTTAATTTAAAATTTAATCATTTTTTAAATTAAATCGAA
26335898 CCTTAGTCACTCTA
66 CCTTAGTCACTCTA
26335912 GATGTTTGGTGCAATTAACTCATTATTTTAATTTAAAATTTAATCATTTTTTAAATTAAATCGAA
1 GATGTTTGGTGCAATTAACTCATTATTTTAATTTAAAATTTAATCATTTTTTAAATTAAATCGAA
*
26335977 CTTTAGTCACTCTA
66 CCTTAGTCACTCTA
26335991 TTTATTATCT
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (79 bp):
GATGTTTGGTGCAATTAACTCATTATTTTAATTTAAAATTTAATCATTTTTTAAATTAAATCGAA
CCTTAGTCACTCTA
Found at i:26335970 original size:23 final size:25
Alignment explanation
Indices: 26335926--26335971 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
26335916 TTTGGTGCAA
*
26335926 TTAACTCATTATTTTAATTTAAAAT
1 TTAACTCATTATTTTAAATTAAAAT
26335951 TTAA-TCATT-TTTTAAATTAAA
1 TTAACTCATTATTTTAAATTAAA
26335972 TCGAACTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 11 0.55
24 5 0.25
25 4 0.20
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (25 bp):
TTAACTCATTATTTTAAATTAAAAT
Found at i:26337293 original size:15 final size:15
Alignment explanation
Indices: 26337273--26337306 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
26337263 ACGTTTCAAG
*
26337273 AATTAAAATTTACCA
1 AATTAAAATATACCA
26337288 AATTAAAATATACCA
1 AATTAAAATATACCA
26337303 AATT
1 AATT
26337307 TACCAAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (15 bp):
AATTAAAATATACCA
Found at i:26342201 original size:159 final size:158
Alignment explanation
Indices: 26341947--26342260 Score: 610
Period size: 159 Copynumber: 2.0 Consensus size: 158
26341937 GAATTTCCTT
26341947 CTCCCACCTGCCACGATAGCCAAATTGCTCTCTTGGGTTTGAAGCAACAACTTCGCCCTCTCAAT
1 CTCCCACCTGCCACGATAGCCAAATTGCTCTCTTGGGTTTGAAGCAACAACTTCGCCCTCTCAAT
26342012 CGGTGCCACGATCGTGTGCACCACGCCACCCATCACCGCTCCCGCCATTAGATCACGGTGGAAGC
66 CGGTGCCACGATCGTGTGCACCACGCCACCCATCACCGCTCCCGCCATTAGATCACGGTGGAAGC
26342077 TCGCCAGCCATTTGTACGGCCCCGAAGC
131 TCGCCAGCCATTTGTACGGCCCCGAAGC
26342105 NCTCCCACCTGCCACGATAGCCAAATTGCTCTCTTGGGTTTGAAGCAACAACTTCGCCCTCTCAA
1 -CTCCCACCTGCCACGATAGCCAAATTGCTCTCTTGGGTTTGAAGCAACAACTTCGCCCTCTCAA
*
26342170 TCGGTGCCACGATCGTGTGCACCACGCCACCCATCACCGCTCCCGCCATTAGATCCCGGTGGAAG
65 TCGGTGCCACGATCGTGTGCACCACGCCACCCATCACCGCTCCCGCCATTAGATCACGGTGGAAG
26342235 CTCGCCAGCCATTTGTACGGCCCCGA
130 CTCGCCAGCCATTTGTACGGCCCCGA
26342261 CGCCGGTTTC
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
159 154 1.00
ACGTcount: A:0.20, C:0.38, G:0.21, T:0.20
Consensus pattern (158 bp):
CTCCCACCTGCCACGATAGCCAAATTGCTCTCTTGGGTTTGAAGCAACAACTTCGCCCTCTCAAT
CGGTGCCACGATCGTGTGCACCACGCCACCCATCACCGCTCCCGCCATTAGATCACGGTGGAAGC
TCGCCAGCCATTTGTACGGCCCCGAAGC
Found at i:26347159 original size:31 final size:31
Alignment explanation
Indices: 26347093--26347159 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
26347083 ATTAAATAGT
* * * *
26347093 TAAATAATTTAATATAATAATAGATGATATT
1 TAAATAATTTAATATAATAATACATAAAATA
26347124 TAAATAATTTAATATAATGAA-ACATAAAATA
1 TAAATAATTTAATATAAT-AATACATAAAATA
26347155 TAAAT
1 TAAAT
26347160 TAATCTAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 29 0.94
32 2 0.06
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.37
Consensus pattern (31 bp):
TAAATAATTTAATATAATAATACATAAAATA
Found at i:26349044 original size:45 final size:45
Alignment explanation
Indices: 26348971--26349085 Score: 189
Period size: 45 Copynumber: 2.6 Consensus size: 45
26348961 TACATATGAT
* *
26348971 CACTTATCAC-TTGTCCCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
26349014 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCAC-TGATCAGATAAGTGTAGCTAAAGCTAC
26349060 CACTTATCACTTTGTCACTGATCAGA
1 CACTTATCACTTTGTCACTGATCAGA
26349086 AGTACTCAAA
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
43 10 0.15
44 6 0.09
45 27 0.40
46 24 0.36
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (45 bp):
CACTTATCACTTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:26354237 original size:22 final size:22
Alignment explanation
Indices: 26354212--26354287 Score: 57
Period size: 22 Copynumber: 3.5 Consensus size: 22
26354202 ATAATATGGG
26354212 ATATGATATGATAATATATGAA
1 ATATGATATGATAATATATGAA
* *
26354234 ATATGGTA-CA-ACATGATATGAA
1 ATATGATATGATA-AT-ATATGAA
* * * *
26354256 ATATGATTTGATAAGATACGAT
1 ATATGATATGATAATATATGAA
*
26354278 ATAAGATATG
1 ATATGATATG
26354288 CTCTAATTTG
Statistics
Matches: 40, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
20 1 0.03
21 3 0.08
22 33 0.82
23 2 0.05
24 1 0.03
ACGTcount: A:0.46, C:0.04, G:0.17, T:0.33
Consensus pattern (22 bp):
ATATGATATGATAATATATGAA
Found at i:26356169 original size:18 final size:18
Alignment explanation
Indices: 26356142--26356180 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26356132 TCCATAGGCA
26356142 GAGCCAGTTG-CTAGAGTT
1 GAGCCAGTTGTC-AGAGTT
*
26356160 GAGCCTGTTGTCAGAGTT
1 GAGCCAGTTGTCAGAGTT
26356178 GAG
1 GAG
26356181 TAGGTACCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 18 0.95
19 1 0.05
ACGTcount: A:0.21, C:0.15, G:0.36, T:0.28
Consensus pattern (18 bp):
GAGCCAGTTGTCAGAGTT
Found at i:26357421 original size:31 final size:31
Alignment explanation
Indices: 26357386--26357454 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 31
26357376 TATAGGCAAA
*
26357386 TTTCAAAAGTAATTGAATCCTAATAAAACTC
1 TTTCAAAAGTAATTGAAGCCTAATAAAACTC
*
26357417 TTTCAAGAGTAATTGAAGCCTAATAAAACTC
1 TTTCAAAAGTAATTGAAGCCTAATAAAACTC
26357448 TTT-AAAA
1 TTTCAAAA
26357455 TTATCTAAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 3 0.09
31 32 0.91
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (31 bp):
TTTCAAAAGTAATTGAAGCCTAATAAAACTC
Found at i:26359293 original size:15 final size:15
Alignment explanation
Indices: 26359273--26359302 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26359263 ACTTCTAGTG
26359273 CAACTCTTTATCATA
1 CAACTCTTTATCATA
26359288 CAACTCTTTATCATA
1 CAACTCTTTATCATA
26359303 GGTCGAATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.00, T:0.40
Consensus pattern (15 bp):
CAACTCTTTATCATA
Found at i:26362868 original size:5 final size:6
Alignment explanation
Indices: 26362853--26362878 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
26362843 TGATTTTGGG
26362853 AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA
26362879 GAACAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:26376509 original size:17 final size:16
Alignment explanation
Indices: 26376484--26376525 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
26376474 TCACCAGTGC
*
26376484 TTTGGCAAATTGAGGAG
1 TTTGCCAAA-TGAGGAG
*
26376501 TTTGCCAAATGGGGAG
1 TTTGCCAAATGAGGAG
26376517 TTTGCCAAA
1 TTTGCCAAA
26376526 AGAGTATCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 15 0.65
17 8 0.35
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.29
Consensus pattern (16 bp):
TTTGCCAAATGAGGAG
Found at i:26378933 original size:20 final size:21
Alignment explanation
Indices: 26378910--26378959 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
26378900 GCCATTTTAA
*
26378910 TTTTAATTTTAATTTTTATGT
1 TTTTAATTTTAATTTTTACGT
*
26378931 TTTTAA-ATTAATTTTTACG-
1 TTTTAATTTTAATTTTTACGT
*
26378950 TTCTAATTTT
1 TTTTAATTTT
26378960 TTTTCATTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 5 0.21
20 13 0.54
21 6 0.25
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (21 bp):
TTTTAATTTTAATTTTTACGT
Found at i:26381066 original size:25 final size:25
Alignment explanation
Indices: 26381033--26381126 Score: 104
Period size: 25 Copynumber: 3.8 Consensus size: 25
26381023 ATCATTAAAT
*
26381033 AATTTTAAAATTATTAAAATTATTA
1 AATTATAAAATTATTAAAATTATTA
*
26381058 TATTATAAAATTATTAAAATT-TTA
1 AATTATAAAATTATTAAAATTATTA
* * *
26381082 AATTTTTAAAATTATT-ATATTATAA
1 AA-TTATAAAATTATTAAAATTATTA
26381107 AATTATTAAAATT-TTAAAAT
1 AATTA-TAAAATTATTAAAAT
26381127 CATTTGCTGA
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
24 12 0.21
25 45 0.79
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
AATTATAAAATTATTAAAATTATTA
Found at i:26381068 original size:16 final size:16
Alignment explanation
Indices: 26381033--26381126 Score: 82
Period size: 17 Copynumber: 5.7 Consensus size: 16
26381023 ATCATTAAAT
*
26381033 AATTTTAAAATTATTAA
1 AATTATAAAATTATT-A
* * *
26381050 AATTATTATATTATAA
1 AATTATAAAATTATTA
26381066 AATTATTAAAATT-TTA
1 AATTA-TAAAATTATTA
*
26381082 AATTTTTAAAATTATTA
1 AA-TTATAAAATTATTA
*
26381099 TATTATAAAATTATTAA
1 AATTATAAAATTATT-A
*
26381116 AATTTTAAAAT
1 AATTATAAAAT
26381127 CATTTGCTGA
Statistics
Matches: 61, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
16 29 0.48
17 32 0.52
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AATTATAAAATTATTA
Found at i:26381091 original size:41 final size:41
Alignment explanation
Indices: 26381033--26381124 Score: 166
Period size: 41 Copynumber: 2.2 Consensus size: 41
26381023 ATCATTAAAT
26381033 AATTTTAAAATTATTAAAATTATTATATTATAAAATTATTAA
1 AATTTT-AAATTATTAAAATTATTATATTATAAAATTATTAA
*
26381075 AATTTTAAATTTTTAAAATTATTATATTATAAAATTATTAA
1 AATTTTAAATTATTAAAATTATTATATTATAAAATTATTAA
26381116 AATTTTAAA
1 AATTTTAAA
26381125 ATCATTTGCT
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 43 0.88
42 6 0.12
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (41 bp):
AATTTTAAATTATTAAAATTATTATATTATAAAATTATTAA
Found at i:26381123 original size:8 final size:8
Alignment explanation
Indices: 26381033--26381126 Score: 84
Period size: 8 Copynumber: 11.4 Consensus size: 8
26381023 ATCATTAAAT
26381033 AATTTTAA
1 AATTTTAA
26381041 AATTATTAA
1 AATT-TTAA
26381050 AATTATT-A
1 AATT-TTAA
* *
26381058 TATTATAA
1 AATTTTAA
26381066 AATTATTAA
1 AATT-TTAA
26381075 AATTTTAA
1 AATTTTAA
*
26381083 ATTTTTAA
1 AATTTTAA
26381091 AATTATT-A
1 AATT-TTAA
* *
26381099 TATTATAA
1 AATTTTAA
26381107 AATTATTAA
1 AATT-TTAA
26381116 AATTTTAA
1 AATTTTAA
26381124 AAT
1 AAT
26381127 CATTTGCTGA
Statistics
Matches: 70, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
7 2 0.03
8 41 0.59
9 27 0.39
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (8 bp):
AATTTTAA
Found at i:26381745 original size:24 final size:24
Alignment explanation
Indices: 26381704--26381766 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
26381694 ACATCCCCGA
*
26381704 AACAATAGAAAGGCTGAAAAGGAT
1 AACAATGGAAAGGCTGAAAAGGAT
* *
26381728 AACAATGGAACGGTTGAAAAGGAT
1 AACAATGGAAAGGCTGAAAAGGAT
* *
26381752 AGCAATGGAATGGCT
1 AACAATGGAAAGGCT
26381767 ATTATATCAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.46, C:0.10, G:0.29, T:0.16
Consensus pattern (24 bp):
AACAATGGAAAGGCTGAAAAGGAT
Found at i:26391813 original size:19 final size:20
Alignment explanation
Indices: 26391789--26391826 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26391779 CCTGACTTGA
26391789 AAATTTTC-AATTTCTTTCT
1 AAATTTTCTAATTTCTTTCT
*
26391808 AAATTTTCTAATTTGTTTC
1 AAATTTTCTAATTTCTTTC
26391827 GAATTGGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.26, C:0.13, G:0.03, T:0.58
Consensus pattern (20 bp):
AAATTTTCTAATTTCTTTCT
Found at i:26393301 original size:56 final size:56
Alignment explanation
Indices: 26393223--26393336 Score: 201
Period size: 56 Copynumber: 2.0 Consensus size: 56
26393213 TAAATATTAG
* *
26393223 AGGCAAGTCGTGAGAACAAAACTAATTAAAGCAATCGGTGTTTTTAATATTGGTGT
1 AGGCAAGTCATGAGAACAAAACTAATTAAAGCAATCGATGTTTTTAATATTGGTGT
*
26393279 AGGCAAGTCATGAGAACGAAACTAATTAAAGCAATCGATGTTTTTAATATTGGTGT
1 AGGCAAGTCATGAGAACAAAACTAATTAAAGCAATCGATGTTTTTAATATTGGTGT
26393335 AG
1 AG
26393337 TTTTTATGTT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.30
Consensus pattern (56 bp):
AGGCAAGTCATGAGAACAAAACTAATTAAAGCAATCGATGTTTTTAATATTGGTGT
Found at i:26395957 original size:19 final size:19
Alignment explanation
Indices: 26395923--26395971 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
26395913 GATAGAAAAG
*
26395923 ATGACAAATG-AATAT-GA
1 ATGAGAAATGAAATATGGA
26395940 TATGAGAAATGAAATATGGA
1 -ATGAGAAATGAAATATGGA
26395960 ATGATGAAATGA
1 ATGA-GAAATGA
26395972 GATGTGAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 9 0.33
19 9 0.33
20 9 0.33
ACGTcount: A:0.51, C:0.02, G:0.22, T:0.24
Consensus pattern (19 bp):
ATGAGAAATGAAATATGGA
Found at i:26395980 original size:19 final size:18
Alignment explanation
Indices: 26395928--26395992 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 18
26395918 AAAAGATGAC
26395928 AAATGAATATGATATGA-G
1 AAATGAATATGA-ATGATG
26395946 AAATGAAATATGGAATGATG
1 AAATG-AATAT-GAATGATG
*
26395966 AAATGAGATGTGAATTG-TG
1 AAATGA-ATATGAA-TGATG
26395985 AAATGAAT
1 AAATGAAT
26395993 TCAAGTATTG
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
18 7 0.17
19 21 0.51
20 13 0.32
ACGTcount: A:0.48, C:0.00, G:0.25, T:0.28
Consensus pattern (18 bp):
AAATGAATATGAATGATG
Found at i:26396996 original size:54 final size:54
Alignment explanation
Indices: 26396892--26396998 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
26396882 TGTGAGATCA
* * **
26396892 AAGTCAGTGAGTTATACAGGCAGAGACACGGGCTCGGACACGGCCATGTGTCTT
1 AAGTCAGTGAGTTACACAGGCAGAGACACGAGCTCGGACACAACCATGTGTCTT
* * *
26396946 AAGTTAGTGAGTTACACAGGCA-AGGACACGAGCTGGGACACAACCGTGTGTCT
1 AAGTCAGTGAGTTACACAGGCAGA-GACACGAGCTCGGACACAACCATGTGTCT
26396999 CAACTTTGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.02
54 44 0.98
ACGTcount: A:0.28, C:0.21, G:0.31, T:0.20
Consensus pattern (54 bp):
AAGTCAGTGAGTTACACAGGCAGAGACACGAGCTCGGACACAACCATGTGTCTT
Found at i:26398777 original size:8 final size:8
Alignment explanation
Indices: 26398764--26398832 Score: 50
Period size: 8 Copynumber: 8.2 Consensus size: 8
26398754 CTAAGCCCTA
26398764 TTTTTATT
1 TTTTTATT
26398772 TTTTTATT
1 TTTTTATT
*
26398780 TATTTTTTT
1 T-TTTTATT
*
26398789 TATTTTATGGA
1 T-TTTTAT--T
* *
26398800 TTTATATG
1 TTTTTATT
*
26398808 TTTTTA-C
1 TTTTTATT
26398815 TTTTTATT
1 TTTTTATT
26398823 TTTTTATT
1 TTTTTATT
26398831 TT
1 TT
26398833 CTGGATTTAT
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
7 6 0.12
8 24 0.49
9 13 0.27
10 5 0.10
11 1 0.02
ACGTcount: A:0.16, C:0.01, G:0.04, T:0.78
Consensus pattern (8 bp):
TTTTTATT
Found at i:26410515 original size:42 final size:42
Alignment explanation
Indices: 26410402--26410503 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 42
26410392 AATGTCATGT
* * *
26410402 CCCAGACATGGTCTTACATGGAAATCTCATATCGGTGCCAATAG
1 CCCAGATATGGTCTTACA-CG-AATCTCATATCGATGCCAATAG
* *
26410446 CCCAGGTATGGTCTTACACGAAGTCTCATATCGATGTC-ATA-
1 CCCAGATATGGTCTTACACGAA-TCTCATATCGATGCCAATAG
26410487 CCCTAGATATGGTCTTA
1 CCC-AGATATGGTCTTA
26410504 TACGGGATCT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
41 3 0.06
42 17 0.34
43 14 0.28
44 16 0.32
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (42 bp):
CCCAGATATGGTCTTACACGAATCTCATATCGATGCCAATAG
Found at i:26410545 original size:20 final size:20
Alignment explanation
Indices: 26410520--26410698 Score: 88
Period size: 20 Copynumber: 8.2 Consensus size: 20
26410510 ATCTCAAATT
26410520 GATGCCGATGCCACATCCCA
1 GATGCCGATGCCACATCCCA
26410540 GATGCCGATGCCACATCCCA
1 GATGCCGATGCCACATCCCA
** * *** *
26410560 GATATGGTCTTATACGGGATCTCAAA
1 G--AT-G-CCGATGCCACATC-C-CA
26410586 TTGATGCCGATGCCACATCCCA
1 --GATGCCGATGCCACATCCCA
26410608 GATGCCGATGCCACATCCCA
1 GATGCCGATGCCACATCCCA
** * *** *
26410628 GATATGGTCTTATACGGGATCTCAAA
1 G--AT-G-CCGATGCCACATC-C-CA
26410654 TTGATGCCGATGCCACATCCCA
1 --GATGCCGATGCCACATCCCA
26410676 GATGCCGATGCCACATCCCA
1 GATGCCGATGCCACATCCCA
26410696 GAT
1 GAT
26410699 ATGGTCTTAT
Statistics
Matches: 115, Mismatches: 28, Indels: 32
0.66 0.16 0.18
Matches are distributed among these distances:
20 65 0.57
22 6 0.05
23 4 0.03
24 28 0.24
25 4 0.03
26 6 0.05
28 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (20 bp):
GATGCCGATGCCACATCCCA
Found at i:26410586 original size:68 final size:68
Alignment explanation
Indices: 26410491--26410722 Score: 464
Period size: 68 Copynumber: 3.4 Consensus size: 68
26410481 GTCATACCCT
26410491 AGATATGGTCTTATACGGGATCTCAAATTGATGCCGATGCCACATCCCAGATGCCGATGCCACAT
1 AGATATGGTCTTATACGGGATCTCAAATTGATGCCGATGCCACATCCCAGATGCCGATGCCACAT
26410556 CCC
66 CCC
26410559 AGATATGGTCTTATACGGGATCTCAAATTGATGCCGATGCCACATCCCAGATGCCGATGCCACAT
1 AGATATGGTCTTATACGGGATCTCAAATTGATGCCGATGCCACATCCCAGATGCCGATGCCACAT
26410624 CCC
66 CCC
26410627 AGATATGGTCTTATACGGGATCTCAAATTGATGCCGATGCCACATCCCAGATGCCGATGCCACAT
1 AGATATGGTCTTATACGGGATCTCAAATTGATGCCGATGCCACATCCCAGATGCCGATGCCACAT
26410692 CCC
66 CCC
26410695 AGATATGGTCTTATACGGGATCTCAAAT
1 AGATATGGTCTTATACGGGATCTCAAAT
26410723 CAATTTAGCA
Statistics
Matches: 164, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 164 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (68 bp):
AGATATGGTCTTATACGGGATCTCAAATTGATGCCGATGCCACATCCCAGATGCCGATGCCACAT
CCC
Found at i:26411953 original size:8 final size:8
Alignment explanation
Indices: 26411940--26411965 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
26411930 CACACGAGTT
26411940 GCCATACG
1 GCCATACG
26411948 GCCATACG
1 GCCATACG
26411956 GCCATACG
1 GCCATACG
26411964 GC
1 GC
26411966 AGGTGTGTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.38, G:0.27, T:0.12
Consensus pattern (8 bp):
GCCATACG
Found at i:26416897 original size:109 final size:106
Alignment explanation
Indices: 26416706--26416910 Score: 295
Period size: 109 Copynumber: 1.9 Consensus size: 106
26416696 TTATTGATTT
26416706 TGAAGACAGGTCATGCATGGTATTTATACGCACCATGCATTAGAAAAACATAAACGTTAGTAGGA
1 TGAAGACAGGTCATGCATGGTATTTATACGCACCATGCATTAGAAAAACATAAACGTTAGTAGGA
* **
26416771 AGCCTGTTTGGCCAAAATAATCTTTAAAAAAAGAAATAAAACAA
66 AGCCTATTTAACCAAAAT-A--TTTAAAAAAAGAAATAAAACAA
* * * * *
26416815 TGAAGACTGGTCATGCATGGTATTTATAGGCACCATGTATTAGAAAAACATGAACGTT-GATAGT
1 TGAAGACAGGTCATGCATGGTATTTATACGCACCATGCATTAGAAAAACATAAACGTTAG-TAGG
26416879 AAGCCTATTTAACCAAAATATTTAAAAAAAGA
65 AAGCCTATTTAACCAAAATATTTAAAAAAAGA
26416911 GAAAGAAAAA
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
106 12 0.14
108 2 0.02
109 73 0.84
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.26
Consensus pattern (106 bp):
TGAAGACAGGTCATGCATGGTATTTATACGCACCATGCATTAGAAAAACATAAACGTTAGTAGGA
AGCCTATTTAACCAAAATATTTAAAAAAAGAAATAAAACAA
Found at i:26419290 original size:2 final size:2
Alignment explanation
Indices: 26419285--26419314 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
26419275 TTCTATATAA
26419285 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
26419315 ACATGTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:26434264 original size:17 final size:17
Alignment explanation
Indices: 26434222--26434265 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
26434212 TATTGCTTCT
26434222 AAATGATATTTTTGGGAA
1 AAATG-TATTTTTGGGAA
*
26434240 AAAAGTATTTTT-GGAA
1 AAATGTATTTTTGGGAA
26434256 CAAATGTATT
1 -AAATGTATT
26434266 CCTAAACAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 4 0.17
17 15 0.65
18 4 0.17
ACGTcount: A:0.41, C:0.02, G:0.18, T:0.39
Consensus pattern (17 bp):
AAATGTATTTTTGGGAA
Found at i:26435334 original size:128 final size:128
Alignment explanation
Indices: 26435106--26435490 Score: 770
Period size: 128 Copynumber: 3.0 Consensus size: 128
26435096 ACGACTCAAA
26435106 CTAAAATCAACTTAAATTAACAAAACTCAAAATCATCCCAAACCCCAAAATCATTCAAATGAAAC
1 CTAAAATCAACTTAAATTAACAAAACTCAAAATCATCCCAAACCCCAAAATCATTCAAATGAAAC
26435171 CTAAAATTACTAAAAAAAAACTTGAACTACCCAGAATTATTCTAATTTAAAACTAGCCTAAAT
66 CTAAAATTACTAAAAAAAAACTTGAACTACCCAGAATTATTCTAATTTAAAACTAGCCTAAAT
26435234 CTAAAATCAACTTAAATTAACAAAACTCAAAATCATCCCAAACCCCAAAATCATTCAAATGAAAC
1 CTAAAATCAACTTAAATTAACAAAACTCAAAATCATCCCAAACCCCAAAATCATTCAAATGAAAC
26435299 CTAAAATTACTAAAAAAAAACTTGAACTACCCAGAATTATTCTAATTTAAAACTAGCCTAAAT
66 CTAAAATTACTAAAAAAAAACTTGAACTACCCAGAATTATTCTAATTTAAAACTAGCCTAAAT
26435362 CTAAAATCAACTTAAATTAACAAAACTCAAAATCATCCCAAACCCCAAAATCATTCAAATGAAAC
1 CTAAAATCAACTTAAATTAACAAAACTCAAAATCATCCCAAACCCCAAAATCATTCAAATGAAAC
26435427 CTAAAATTACTAAAAAAAAACTTGAACTACCCAGAATTATTCTAATTTAAAACTAGCCTAAAT
66 CTAAAATTACTAAAAAAAAACTTGAACTACCCAGAATTATTCTAATTTAAAACTAGCCTAAAT
26435490 C
1 C
26435491 GAAATAATCT
Statistics
Matches: 257, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
128 257 1.00
ACGTcount: A:0.51, C:0.22, G:0.03, T:0.24
Consensus pattern (128 bp):
CTAAAATCAACTTAAATTAACAAAACTCAAAATCATCCCAAACCCCAAAATCATTCAAATGAAAC
CTAAAATTACTAAAAAAAAACTTGAACTACCCAGAATTATTCTAATTTAAAACTAGCCTAAAT
Found at i:26442451 original size:135 final size:138
Alignment explanation
Indices: 26442245--26442554 Score: 305
Period size: 135 Copynumber: 2.2 Consensus size: 138
26442235 TTTTTTAAAT
* * * * * *
26442245 AATAAAGGAAACT-AAAAAGATAAAATAGTTTTTCCT-TCATAA-TCCAAGTTTTCCTCTAAATA
1 AATAAAGGAAA-TAAAAAAGATAAATTAATTTTTCGTGT-AAAACT-CAAGTTTTCCTATAAAAA
* * *
26442307 CTCAGGTAATTTCCTGTAAAATCCC-AAGTGTT-TC-CCTCTTACTA-AAAAA-TAAAATTAATT
63 CTCAAGTAATTTACTATAAAA-CCCTAAGTGTTCTCTCCTCTTACTAGAAAAACTAAAA-TAATT
26442367 CTAAAAAAGAAAA
126 CTAAAAAAGAAAA
*
26442380 AATGAAATGAAA-AAAAAAGATAAATTAATTTTTCGTGTAAAACTCAAGTTTTCCTATAAAAACT
1 AAT-AAAGGAAATAAAAAAGATAAATTAATTTTTCGTGTAAAACTCAAGTTTTCCTATAAAAACT
* * * * *
26442444 TAAGTAATTTATTATAAAACCCTAAGTTTTCTCTTCCTTTTACTAGGAAAAATCTGAAATAATTC
65 CAAGTAATTTACTATAAAACCCTAAGTGTTCTC-TCCTCTTACTA-GAAAAA-CTAAAATAATTC
*
26442509 TAAAAAGGAAAA
127 TAAAAAAGAAAA
* * *
26442521 GATAAAGGAAATTAAAAAGATAAATTGATTTTTC
1 AATAAAGGAAATAAAAAAGATAAATTAATTTTTC
26442555 TAGTCCATAT
Statistics
Matches: 142, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
134 3 0.02
135 64 0.45
136 11 0.08
138 9 0.06
140 12 0.08
141 39 0.27
142 4 0.03
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.32
Consensus pattern (138 bp):
AATAAAGGAAATAAAAAAGATAAATTAATTTTTCGTGTAAAACTCAAGTTTTCCTATAAAAACTC
AAGTAATTTACTATAAAACCCTAAGTGTTCTCTCCTCTTACTAGAAAAACTAAAATAATTCTAAA
AAAGAAAA
Found at i:26442728 original size:31 final size:31
Alignment explanation
Indices: 26442693--26442751 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
26442683 ATGTGTGCAA
26442693 TGACTAAAATAATAAAAATATGTAACGAGAG
1 TGACTAAAATAATAAAAATATGTAACGAGAG
* *
26442724 TGACTAAAATGATAAAATTATGTAACGA
1 TGACTAAAATAATAAAAATATGTAACGA
26442752 TAATATCTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.53, C:0.07, G:0.15, T:0.25
Consensus pattern (31 bp):
TGACTAAAATAATAAAAATATGTAACGAGAG
Found at i:26445683 original size:18 final size:18
Alignment explanation
Indices: 26445642--26445683 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
26445632 TCATTGCAAT
*
26445642 ATATGTAAAAATAATTTA
1 ATATATAAAAATAATTTA
*
26445660 AAATATAAAAATTAA-TTA
1 ATATATAAAAA-TAATTTA
26445678 ATATAT
1 ATATAT
26445684 CAATATATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
ATATATAAAAATAATTTA
Found at i:26445839 original size:34 final size:35
Alignment explanation
Indices: 26445773--26445839 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
26445763 CAAACACCAG
*
26445773 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAACCATTTTACAGAAAAGT
* *
26445808 AAAATATTTTCCCG-AAACCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAACCATTTTACAGAAAA
26445840 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAACCATTTTACAGAAAAGT
Found at i:26447902 original size:17 final size:18
Alignment explanation
Indices: 26447865--26447902 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
26447855 TACAATAAAT
* *
26447865 AATATATAATAAATTTGA
1 AATATATAATAAATATAA
26447883 AATA-ATAATAAATATAA
1 AATATATAATAAATATAA
26447900 AAT
1 AAT
26447903 TAAAAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
AATATATAATAAATATAA
Found at i:26447977 original size:24 final size:24
Alignment explanation
Indices: 26447851--26448150 Score: 142
Period size: 24 Copynumber: 12.8 Consensus size: 24
26447841 TGAATTGGAT
* *
26447851 AATTTACAATAAATAATATATAATA
1 AATTTAAAAT-AATAATATATGATA
* *
26447876 AATTTGAAATAATAATAAAT-ATA
1 AATTTAAAATAATAATATATGATA
* *
26447899 AAATTAAAA-AAT--TTTGATGAT-
1 AATTTAAAATAATAATAT-ATGATA
* * ***
26447920 AATTCTAGAATAATCATACGCGATA
1 AATT-TAAAATAATAATATATGATA
** * *
26447945 AATCCAAAATAATAGTATATAATA
1 AATTTAAAATAATAATATATGATA
*
26447969 AATTT-AAA-AATATTA-ATGATA
1 AATTTAAAATAATAATATATGATA
* *
26447990 AATTTGAAATAGAT-ATACATGATA
1 AATTTAAAATA-ATAATATATGATA
** ** *
26448014 AATTTAAAATAATGTTA-ACAATG
1 AATTTAAAATAATAATATATGATA
26448037 AATTTAAAATAATAATAT-TGATA
1 AATTTAAAATAATAATATATGATA
* *
26448060 AA-TTACAAATAATAAAACATGATA
1 AATTTA-AAATAATAATATATGATA
* **
26448084 AATCTAAAATAATAATATACAATA
1 AATTTAAAATAATAATATATGATA
* * * * *
26448108 CACTT-AGATAATATTA-ATGATT
1 AATTTAAAATAATAATATATGATA
26448130 AATTTAATAATAATAAGTATA
1 AATTTAA-AATAATAA-TATA
26448151 AACATTCAAA
Statistics
Matches: 199, Mismatches: 56, Indels: 39
0.68 0.19 0.13
Matches are distributed among these distances:
20 1 0.01
21 15 0.08
22 27 0.14
23 63 0.32
24 76 0.38
25 16 0.08
26 1 0.01
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (24 bp):
AATTTAAAATAATAATATATGATA
Found at i:26448119 original size:70 final size:68
Alignment explanation
Indices: 26447941--26448133 Score: 174
Period size: 70 Copynumber: 2.8 Consensus size: 68
26447931 AATCATACGC
* * * * * ** *
26447941 GATAAATCCAAAATAATAGTATATAATAAATTTAAAAATATTAATGATAAATTTGAAATAGATAT
1 GATAAATCTAAAATAATAATATACAAT-AATTTAATAATAATAATGATAAATTACAAATAGATAA
26448006 ACAT
65 ACAT
* ** *
26448010 GATAAATTTAAAATAATGTTA-ACAATGAATTTAAAATAATAATATTGATAAATTACAAATA-AT
1 GATAAATCTAAAATAATAATATACAAT-AATTT--AATAATAATAATGATAAATTACAAATAGAT
26448073 AAAACAT
63 -AAACAT
* * *
26448080 GATAAATCTAAAATAATAATATACAATACACTTAGATAATATTAATGATTAATT
1 GATAAATCTAAAATAATAATATACAATA-ATTTA-ATAATAATAATGATAAATT
26448134 TAATAATAAT
Statistics
Matches: 99, Mismatches: 19, Indels: 11
0.77 0.15 0.09
Matches are distributed among these distances:
68 9 0.09
69 20 0.20
70 62 0.63
71 8 0.08
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (68 bp):
GATAAATCTAAAATAATAATATACAATAATTTAATAATAATAATGATAAATTACAAATAGATAAA
CAT
Found at i:26450581 original size:22 final size:22
Alignment explanation
Indices: 26450533--26450581 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
26450523 AATCATGTCA
* *
26450533 TTTTCAAGTTGAAACGGTATGG
1 TTTTGAAGTTGAAACGGAATGG
26450555 TTTTGAAGTTGAAACGGAATGG
1 TTTTGAAGTTGAAACGGAATGG
26450577 TTTTG
1 TTTTG
26450582 GCTGGTTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.27, C:0.06, G:0.29, T:0.39
Consensus pattern (22 bp):
TTTTGAAGTTGAAACGGAATGG
Found at i:26460580 original size:19 final size:20
Alignment explanation
Indices: 26460538--26460583 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
26460528 AAAAAAATTA
* *
26460538 AAAATCATAATATATTTTTG
1 AAAATTATAAAATATTTTTG
26460558 AAAATTATAAAATATTTTT-
1 AAAATTATAAAATATTTTTG
26460577 AAAATTA
1 AAAATTA
26460584 CAAGTCTGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (20 bp):
AAAATTATAAAATATTTTTG
Found at i:26460689 original size:22 final size:22
Alignment explanation
Indices: 26460664--26460714 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
26460654 AGAAAATCTT
26460664 AAATTTTTTTATGATTTTTTAA
1 AAATTTTTTTATGATTTTTTAA
**
26460686 AAATAATTTTATGATTTTTTAA
1 AAATTTTTTTATGATTTTTTAA
26460708 AAATTTT
1 AAATTTT
26460715 ATGGGTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (22 bp):
AAATTTTTTTATGATTTTTTAA
Found at i:26460944 original size:19 final size:19
Alignment explanation
Indices: 26460894--26460962 Score: 59
Period size: 19 Copynumber: 3.6 Consensus size: 19
26460884 TCAAAAATAG
* *
26460894 TTTATGATTATTTTTAATTT
1 TTTAAGATT-TTTTTAATGT
* * *
26460914 TTTAATAATTTTCT-ATGT
1 TTTAAGATTTTTTTAATGT
*
26460932 TTTAAGATTTTTTTAATTT
1 TTTAAGATTTTTTTAATGT
*
26460951 TTTAGGATTTTT
1 TTTAAGATTTTT
26460963 AATAAATTTA
Statistics
Matches: 38, Mismatches: 10, Indels: 3
0.75 0.20 0.06
Matches are distributed among these distances:
18 14 0.37
19 18 0.47
20 6 0.16
ACGTcount: A:0.25, C:0.01, G:0.07, T:0.67
Consensus pattern (19 bp):
TTTAAGATTTTTTTAATGT
Found at i:26462762 original size:26 final size:26
Alignment explanation
Indices: 26462733--26462822 Score: 89
Period size: 26 Copynumber: 3.6 Consensus size: 26
26462723 CTTATGAGAG
*
26462733 TCCCGTTATATGGCTCTTCGTGAGCT
1 TCCCGTTATATGGCTCTTCGTGAACT
* *
26462759 TCCCGATTA-AAGGCTCTTTGTGAACT
1 TCCCG-TTATATGGCTCTTCGTGAACT
* * *
26462785 TCCCGTTAT-T-TCTC-ACTTGAACT
1 TCCCGTTATATGGCTCTTCGTGAACT
26462808 TCCCGTTATATGGCT
1 TCCCGTTATATGGCT
26462823 ATCCAGTGCT
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
23 15 0.29
24 4 0.08
25 5 0.10
26 24 0.47
27 3 0.06
ACGTcount: A:0.17, C:0.27, G:0.18, T:0.39
Consensus pattern (26 bp):
TCCCGTTATATGGCTCTTCGTGAACT
Found at i:26462884 original size:24 final size:24
Alignment explanation
Indices: 26462839--26462889 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
26462829 TGCTTCCTAA
*
26462839 TTAATTGCTCTTCGGAGCTACCCG
1 TTAATTGCTCTTCAGAGCTACCCG
*
26462863 TTAATTGCTC-TCTAGAGTTACCCG
1 TTAATTGCTCTTC-AGAGCTACCCG
26462887 TTA
1 TTA
26462890 TAGTCTCTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (24 bp):
TTAATTGCTCTTCAGAGCTACCCG
Found at i:26470272 original size:223 final size:222
Alignment explanation
Indices: 26469885--26470330 Score: 730
Period size: 223 Copynumber: 2.0 Consensus size: 222
26469875 GCTGTTGATA
* *
26469885 GATAAACAACTTTTGTTAAAGGAATTTTGATGAAAACATGATTTAGGGGCTAAATTGAAAAGTTG
1 GATAAACAACTTTTGTTAAAGGAATTTTGATGAAAACATGATTTAAGGGCTAAATTGAAAAGATG
* ** * *
26469950 TAAAATTTATGGGAAATTTTAATTTTTGTGAAATACATAGGCTATTATTTTTATAAGTAAAAATT
66 TAAAATTCATGAAAAATTCTAATTTTTGTGAAATACATAGGCTATTATTGTTATAAGTAAAAATT
* *
26470015 GGCTAGGCTTGGAATAAGAATTAAATTGCATGAATTTCATTTTCCGAGCCTAGGGATGAAATCGT
131 GGCTAGGCTTGGAATAAGAATTAAATTGCATGAATTTAATTTTCCGAGCCTAAGGATGAAATCGT
26470080 CATTAATTAAAAGTATAGAGGCAAAAT
196 CATTAATTAAAAGTATAGAGGCAAAAT
26470107 GATAAACAACTTTTGTTAAAGGAATTTTGATGAAAACATGATTTAAGGGCTAAATTGAAAAGATG
1 GATAAACAACTTTTGTTAAAGGAATTTTGATGAAAACATGATTTAAGGGCTAAATTGAAAAGATG
*
26470172 TAAAATTCATAGAAAAATTCTAATTTTTGTGAAATACATGGGCTATTATTGTTATAAGTAAAAAT
66 TAAAATTCAT-GAAAAATTCTAATTTTTGTGAAATACATAGGCTATTATTGTTATAAGTAAAAAT
* ** *
26470237 TGGCTAGGCTTGGAATAAGGATTAAATTGCATGAATTTAATTTTTTGAGCCTAAGGATGAAATTG
130 TGGCTAGGCTTGGAATAAGAATTAAATTGCATGAATTTAATTTTCCGAGCCTAAGGATGAAATCG
* * *
26470302 TTATTAATTAAAAGTATAGGGGCTAAAT
195 TCATTAATTAAAAGTATAGAGGCAAAAT
26470330 G
1 G
26470331 GAAATTTTAT
Statistics
Matches: 206, Mismatches: 17, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
222 72 0.35
223 134 0.65
ACGTcount: A:0.39, C:0.07, G:0.19, T:0.35
Consensus pattern (222 bp):
GATAAACAACTTTTGTTAAAGGAATTTTGATGAAAACATGATTTAAGGGCTAAATTGAAAAGATG
TAAAATTCATGAAAAATTCTAATTTTTGTGAAATACATAGGCTATTATTGTTATAAGTAAAAATT
GGCTAGGCTTGGAATAAGAATTAAATTGCATGAATTTAATTTTCCGAGCCTAAGGATGAAATCGT
CATTAATTAAAAGTATAGAGGCAAAAT
Found at i:26470852 original size:26 final size:26
Alignment explanation
Indices: 26470822--26470878 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
26470812 GCAACTCTTA
*
26470822 TGAGCGTCCCG-TTATATGGCTCTTCG
1 TGAGCGTCCCGATTA-AAGGCTCTTCG
* * *
26470848 TGAGCTTCTCGATTAAAGGCTCTTTG
1 TGAGCGTCCCGATTAAAGGCTCTTCG
26470874 TGAGC
1 TGAGC
26470879 TTCTTATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.16, C:0.23, G:0.26, T:0.35
Consensus pattern (26 bp):
TGAGCGTCCCGATTAAAGGCTCTTCG
Found at i:26479018 original size:20 final size:20
Alignment explanation
Indices: 26478995--26479033 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26478985 TGAAAAGATG
26478995 TAAAATTTATGAAAAAATTC
1 TAAAATTTATGAAAAAATTC
* *
26479015 TAAATTTTATGAAATAATT
1 TAAAATTTATGAAAAAATT
26479034 GACTGCTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (20 bp):
TAAAATTTATGAAAAAATTC
Found at i:26482777 original size:43 final size:41
Alignment explanation
Indices: 26482561--26482800 Score: 182
Period size: 43 Copynumber: 5.7 Consensus size: 41
26482551 TTAGCGGTAC
* * * *
26482561 CTTTAGCGGCGC--TTCAAAAAAAGCCGCTAAAGGTTATGTT
1 CTTTAGCGGCGCTTTTCCACAAACGCCGCTAAA-GTAATGTT
* * **
26482601 CTTTAGCGGCGC-TTTCTCAGAAACGCCGCTAAAGAACATGAC
1 CTTTAGCGGCGCTTTTC-CACAAACGCCGCTAAAGTA-ATGTT
* * * * *
26482643 CTTTAGCGGCGATTCTACGACAAACGCCGCTAAAGAACATGAT
1 CTTTAGCGGCGCTT-TTCCACAAACGCCGCTAAAGTA-ATGTT
* * * *
26482686 CTTTAGCAGCGC-ATACCAACAAACGCCGCTAAAGCTCATGTT
1 CTTTAGCGGCGCTTTTCC-ACAAACGCCGCTAAAG-TAATGTT
26482728 CTTTTAGCGGCGCCTTTTCCACAAACGCCGCTACAAGTAATGTT
1 C-TTTAGCGGCG-CTTTTCCACAAACGCCGCTA-AAGTAATGTT
*
26482772 CTTTAGCGGCGTTGTTTTCCACAAACGCC
1 CTTTAGCGGCG--CTTTTCCACAAACGCC
26482801 ACTATGGTCA
Statistics
Matches: 163, Mismatches: 25, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
40 12 0.07
41 7 0.04
42 48 0.29
43 52 0.32
44 38 0.23
45 6 0.04
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (41 bp):
CTTTAGCGGCGCTTTTCCACAAACGCCGCTAAAGTAATGTT
Found at i:26483250 original size:21 final size:21
Alignment explanation
Indices: 26483226--26483266 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26483216 TGAACCCCTG
*
26483226 CTTCTCTCACTGCAGCCTCTA
1 CTTCCCTCACTGCAGCCTCTA
* *
26483247 CTTCCCTCGCTGCCGCCTCT
1 CTTCCCTCACTGCAGCCTCT
26483267 GCTTTAAGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.49, G:0.12, T:0.32
Consensus pattern (21 bp):
CTTCCCTCACTGCAGCCTCTA
Found at i:26483328 original size:87 final size:87
Alignment explanation
Indices: 26483177--26483482 Score: 594
Period size: 87 Copynumber: 3.5 Consensus size: 87
26483167 CGATGTCGCA
*
26483177 TCTGTTTTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGAACCCCTGCTTCTCTCACTGCAGC
1 TCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGAACCCCTGCTTCTCTCACTGCAGC
26483242 CTCTACTTCCCTCGCTGCCGCC
66 CTCTACTTCCCTCGCTGCCGCC
26483264 TCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGAACCCCTGCTTCTCTCACTGCAGC
1 TCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGAACCCCTGCTTCTCTCACTGCAGC
26483329 CTCTACTTCCCTCGCTGCCGCC
66 CTCTACTTCCCTCGCTGCCGCC
26483351 TCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGAACCCCTGCTTCTCTCACTGCAGC
1 TCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGAACCCCTGCTTCTCTCACTGCAGC
26483416 CTCTACTTCCCTCGCTGCCGCC
66 CTCTACTTCCCTCGCTGCCGCC
*
26483438 TCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCCTTTGAACC
1 TCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGAACC
26483483 TCAACTGTGG
Statistics
Matches: 217, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 217 1.00
ACGTcount: A:0.13, C:0.31, G:0.16, T:0.39
Consensus pattern (87 bp):
TCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGAACCCCTGCTTCTCTCACTGCAGC
CTCTACTTCCCTCGCTGCCGCC
Found at i:26483337 original size:21 final size:21
Alignment explanation
Indices: 26483313--26483353 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26483303 TGAACCCCTG
*
26483313 CTTCTCTCACTGCAGCCTCTA
1 CTTCCCTCACTGCAGCCTCTA
* *
26483334 CTTCCCTCGCTGCCGCCTCT
1 CTTCCCTCACTGCAGCCTCT
26483354 GCTTTAAGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.49, G:0.12, T:0.32
Consensus pattern (21 bp):
CTTCCCTCACTGCAGCCTCTA
Found at i:26483424 original size:21 final size:21
Alignment explanation
Indices: 26483400--26483440 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26483390 TGAACCCCTG
*
26483400 CTTCTCTCACTGCAGCCTCTA
1 CTTCCCTCACTGCAGCCTCTA
* *
26483421 CTTCCCTCGCTGCCGCCTCT
1 CTTCCCTCACTGCAGCCTCT
26483441 GCTTTAAGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.49, G:0.12, T:0.32
Consensus pattern (21 bp):
CTTCCCTCACTGCAGCCTCTA
Found at i:26488958 original size:25 final size:25
Alignment explanation
Indices: 26488930--26488995 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
26488920 AGTTATGTAT
*
26488930 TAAGTTATTTATTATGAAAATTATG
1 TAAGTTATGTATTATGAAAATTATG
*
26488955 TAAGTTATGTATTATGAATATTATG
1 TAAGTTATGTATTATGAAAATTATG
* *
26488980 TAAGTTGTGAATTATG
1 TAAGTTATGTATTATG
26488996 TAAGTGCTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (25 bp):
TAAGTTATGTATTATGAAAATTATG
Found at i:26488968 original size:16 final size:16
Alignment explanation
Indices: 26488933--26489573 Score: 118
Period size: 16 Copynumber: 40.5 Consensus size: 16
26488923 TATGTATTAA
* *
26488933 GTTATTTATTATGAAA
1 GTTATGTATTATGTAA
*
26488949 ATTATGTAAGTTATGT-A
1 GTTATGT-A-TTATGTAA
26488966 -TTATGAATATTATGTAA
1 GTTATG--TATTATGTAA
* *
26488983 GTTGTGAATTATGTAA
1 GTTATGTATTATGTAA
**
26488999 GTGCTGTATTATGATCAA
1 GTTATGTATTATG-T-AA
26489017 -TTATGTAAGTTATGT-A
1 GTTATGT-A-TTATGTAA
* *
26489033 -TTCTGAAAATTATGTAA
1 GTTATG--TATTATGTAA
* * * *
26489050 GCTGTGTACTATATAA
1 GTTATGTATTATGTAA
*
26489066 GTTATGTAAGTTATGAAA
1 GTTATGT-A-TTATGTAA
*
26489084 ATTATGTAAGTTATGTAA
1 GTTATGT-A-TTATGTAA
* * *
26489102 GTTTTTTATTATGAAA
1 GTTATGTATTATGTAA
* * **
26489118 ATGAACTAACTTATGT-A
1 GTTATGT-A-TTATGTAA
*
26489135 -TTATGAAAATTATGTAA
1 GTTATG--TATTATGTAA
*
26489152 GTTCA-ATATTATGTAA
1 GTT-ATGTATTATGTAA
26489168 GTTATGTATTATG-AA
1 GTTATGTATTATGTAA
26489183 ---A---ATTATGTAA
1 GTTATGTATTATGTAA
*
26489193 GTTCA-ATATTATGTAA
1 GTT-ATGTATTATGTAA
26489209 GTTATGTATTATG-AA
1 GTTATGTATTATGTAA
26489224 ---A---ATTATGTAA
1 GTTATGTATTATGTAA
*
26489234 GTTCA-ATATTATGTAA
1 GTT-ATGTATTATGTAA
26489250 GTTATGTATTATG-AA
1 GTTATGTATTATGTAA
26489265 ---A---ATTATGTAA
1 GTTATGTATTATGTAA
*
26489275 GTTCA-ATATTATGTAA
1 GTT-ATGTATTATGTAA
26489291 GTTATGTATTATG-AA
1 GTTATGTATTATGTAA
26489306 ---A---ATTATGTAA
1 GTTATGTATTATGTAA
*
26489316 GTTCA-ATATTATGTAA
1 GTT-ATGTATTATGTAA
*
26489332 GTTATGTATTATGAAA
1 GTTATGTATTATGTAA
* *
26489348 ATTATGTAAGTTCTGTATA
1 GTTATGT-A-TTATGTA-A
* *
26489367 G-TAT-AAGTTATGTAG
1 GTTATGTA-TTATGTAA
*
26489382 GTTATGAAAATTATGTAA
1 GTTATG--TATTATGTAA
* * *
26489400 GTTATTTTTTTATGAAA
1 GTTA-TGTATTATGTAA
* *
26489417 ATTAAGTAAGTTATGT-A
1 GTTATGT-A-TTATGTAA
*
26489434 -TTATGAAAATTATGTAA
1 GTTATG--TATTATGTAA
*
26489451 GTTCA-ATATTATGTAA
1 GTT-ATGTATTATGTAA
* *
26489467 GTTATGTACTATGAAA
1 GTTATGTATTATGTAA
* *
26489483 ATTATGTAAGTTATGTAT
1 GTTATGT-A-TTATGTAA
*
26489501 GTTGTGTATTATATGTAA
1 GTTATGTA-T-TATGTAA
*
26489519 GTTATGTA-TGTGT-A
1 GTTATGTATTATGTAA
* *
26489533 -TAATGAAAGTTATGTAA
1 GTTATG-TA-TTATGTAA
* *
26489550 GTTGTGTATAATGTAA
1 GTTATGTATTATGTAA
26489566 GTTATGTA
1 GTTATGTA
26489574 AGTTAAGTAT
Statistics
Matches: 457, Mismatches: 88, Indels: 160
0.65 0.12 0.23
Matches are distributed among these distances:
9 24 0.05
10 8 0.02
12 4 0.01
13 4 0.01
14 6 0.01
15 19 0.04
16 244 0.53
17 36 0.08
18 101 0.22
19 11 0.02
ACGTcount: A:0.37, C:0.02, G:0.17, T:0.44
Consensus pattern (16 bp):
GTTATGTATTATGTAA
Found at i:26489007 original size:41 final size:41
Alignment explanation
Indices: 26488948--26489402 Score: 222
Period size: 41 Copynumber: 10.9 Consensus size: 41
26488938 TTATTATGAA
*
26488948 AATTATGTAAGTTATGTATTATGA-ATATTATGTAAGTTGTG
1 AATTATGTAAGTGATGTATTATGATA-ATTATGTAAGTTGTG
*
26488989 AATTATGTAAGTGCTGTATTATGATCAATTATGTAAGTTATGTATTCTG
1 AATTATGTAAGTGATGTATTATGAT-AATTATGTAAG-T-TG-----TG
* *
26489038 AAAATTATGTAAGCTG-TGTACTAT-ATAAGTTATGTAAGTTATG
1 --AATTATGTAAG-TGATGTATTATGATAA-TTATGTAAGTTGTG
* * ** **
26489081 AAAATTATGTAAGTTATGTA--A-GTTTTTTAT-T-A--TGAA
1 --AATTATGTAAGTGATGTATTATGATAATTATGTAAGTTGTG
* ** * * * **
26489117 AATGAACTAACTTATGTATTATGAAAATTATGTAAGTT-CA
1 AATTATGTAAGTGATGTATTATGATAATTATGTAAGTTGTG
* * **
26489157 ATATTATGTAAGTTATGTATTATGAAAATTATGTAAGTT-CA
1 A-ATTATGTAAGTGATGTATTATGATAATTATGTAAGTTGTG
* * **
26489198 ATATTATGTAAGTTATGTATTATGAAAATTATGTAAGTT-CA
1 A-ATTATGTAAGTGATGTATTATGATAATTATGTAAGTTGTG
* * **
26489239 ATATTATGTAAGTTATGTATTATGAAAATTATGTAAGTT-CA
1 A-ATTATGTAAGTGATGTATTATGATAATTATGTAAGTTGTG
* * **
26489280 ATATTATGTAAGTTATGTATTATGAAAATTATGTAAGTT-CA
1 A-ATTATGTAAGTGATGTATTATGATAATTATGTAAGTTGTG
* * *
26489321 ATATTATGTAAGTTATGTATTATGAAAATTATGTAAGTTCTG
1 A-ATTATGTAAGTGATGTATTATGATAATTATGTAAGTTGTG
* * * *
26489363 TA-TAGTATAAGTTATGTAGGTTATGAAAATTATGTAAGTT
1 AATTA-TGTAAGTGATGTA--TTATGATAATTATGTAAGTT
26489403 ATTTTTTTAT
Statistics
Matches: 359, Mismatches: 28, Indels: 52
0.82 0.06 0.12
Matches are distributed among these distances:
34 14 0.04
36 2 0.01
37 5 0.01
38 2 0.01
39 2 0.01
40 8 0.02
41 235 0.65
42 11 0.03
43 41 0.11
44 2 0.01
48 1 0.00
49 5 0.01
50 11 0.03
51 18 0.05
52 2 0.01
ACGTcount: A:0.37, C:0.03, G:0.16, T:0.44
Consensus pattern (41 bp):
AATTATGTAAGTGATGTATTATGATAATTATGTAAGTTGTG
Found at i:26489161 original size:25 final size:25
Alignment explanation
Indices: 26489133--26489339 Score: 98
Period size: 25 Copynumber: 7.7 Consensus size: 25
26489123 CTAACTTATG
26489133 TATTATGAAAATTATGTAAGTTCAA
1 TATTATGAAAATTATGTAAGTTCAA
* * * *
26489158 TATTATGTAAGTTATGT-ATTATGAA
1 TATTATGAAAATTATGTAAGT-TCAA
* *
26489183 AATTATGTAAGTTCAATATTATGTAAGTT-ATG
1 TATTATG--A----AA-ATTATGTAAGTTCA-A
26489215 TATTATGAAAATTATGTAAGTTCAA
1 TATTATGAAAATTATGTAAGTTCAA
* * * *
26489240 TATTATGTAAGTTATGT-ATTATGAA
1 TATTATGAAAATTATGTAAGT-TCAA
* *
26489265 AATTATGTAAGTTCAATATTATGTAAGTT-ATG
1 TATTATG--A----AA-ATTATGTAAGTTCA-A
26489297 TATTATGAAAATTATGTAAGTTCAA
1 TATTATGAAAATTATGTAAGTTCAA
* *
26489322 TATTATGTAAGTTATGTA
1 TATTATGAAAATTATGTA
26489340 TTATGAAAAT
Statistics
Matches: 136, Mismatches: 24, Indels: 44
0.67 0.12 0.22
Matches are distributed among these distances:
24 4 0.03
25 88 0.65
26 6 0.04
30 2 0.01
31 6 0.04
32 26 0.19
33 4 0.03
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.44
Consensus pattern (25 bp):
TATTATGAAAATTATGTAAGTTCAA
Found at i:26489217 original size:82 final size:82
Alignment explanation
Indices: 26489128--26489494 Score: 549
Period size: 82 Copynumber: 4.3 Consensus size: 82
26489118 ATGAACTAAC
26489128 TTATGTATTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTATTATGAAAATTATGTAA
1 TTATGTATTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTATTATGAAAATTATGTAA
26489193 GTTCAATATTATGTAAG
66 GTTCAATATTATGTAAG
26489210 TTATGTATTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTATTATGAAAATTATGTAA
1 TTATGTATTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTATTATGAAAATTATGTAA
26489275 GTTCAATATTATGTAAG
66 GTTCAATATTATGTAAG
26489292 TTATGTATTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTATTATGAAAATTATGTAA
1 TTATGTATTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTATTATGAAAATTATGTAA
** *
26489357 GTTCTGTA-TAGTATAAG
66 GTTCAATATTA-TGTAAG
*
26489374 TTATGTAGGTTATGAAAATTATGTAAGTT-ATTTTTTTATGAAAATTAAGTAAGTTATGTATTAT
1 TTATGTA--TTATGAAAATTATGTAAGTTCA-------AT----ATTATGTAAGTTATGTATTAT
26489438 GAAAATTATGTAAGTTCAATATTATGTAAG
53 GAAAATTATGTAAGTTCAATATTATGTAAG
*
26489468 TTATGTACTATGAAAATTATGTAAGTT
1 TTATGTATTATGAAAATTATGTAAGTT
26489495 ATGTATGTTG
Statistics
Matches: 262, Mismatches: 8, Indels: 20
0.90 0.03 0.07
Matches are distributed among these distances:
81 2 0.01
82 165 0.63
83 1 0.00
84 20 0.08
90 2 0.01
92 19 0.07
94 51 0.19
95 2 0.01
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.44
Consensus pattern (82 bp):
TTATGTATTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTATTATGAAAATTATGTAA
GTTCAATATTATGTAAG
Found at i:26489351 original size:25 final size:25
Alignment explanation
Indices: 26489324--26489606 Score: 93
Period size: 25 Copynumber: 11.6 Consensus size: 25
26489314 AAGTTCAATA
* *
26489324 TTATGTAAGTTATGTATTATGAAAA
1 TTATGTAAGTTATGTATTATGTAAG
* *
26489349 TTATGTAAGTTCTGTA-TAGTATAAG
1 TTATGTAAGTTATGTATTA-TGTAAG
* *
26489374 TTATGTAGGTTATGAAAATTATGTAAG
1 TTATGTAAGTTATG--TATTATGTAAG
*** * *
26489401 TTAT-TTTTTTATGAAAATTAAGTAAG
1 TTATGTAAGTTATG--TATTATGTAAG
*
26489427 TTATGT-A-TTATGAAAATTATGTAAG
1 TTATGTAAGTTATG--TATTATGTAAG
*
26489452 TTCA-AT-A-TTATGTAAGTTATGT-A-
1 TT-ATGTAAGTTATGT-A-TTATGTAAG
* * * *
26489475 CTATGAAAATTATGTAAGTTATGTATG
1 TTATGTAAGTTATGT-A-TTATGTAAG
26489502 -T-TGT--G-TAT-TA-TATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* * *
26489520 TTATGT-A--TGTGTATAATGAAAG
1 TTATGTAAGTTATGTATTATGTAAG
* *
26489542 TTATGTAAGTTGTGTATAATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* *
26489567 TTATGTAAGTTAAGTATAAT-TAAG
1 TTATGTAAGTTATGTATTATGTAAG
*
26489591 CTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
26489607 AGATGTGATA
Statistics
Matches: 206, Mismatches: 31, Indels: 43
0.74 0.11 0.15
Matches are distributed among these distances:
18 7 0.03
19 1 0.00
20 6 0.03
21 3 0.01
22 16 0.08
23 2 0.01
24 23 0.11
25 111 0.54
26 24 0.12
27 11 0.05
28 2 0.01
ACGTcount: A:0.36, C:0.01, G:0.18, T:0.44
Consensus pattern (25 bp):
TTATGTAAGTTATGTATTATGTAAG
Found at i:26489419 original size:26 final size:25
Alignment explanation
Indices: 26489370--26489606 Score: 119
Period size: 25 Copynumber: 9.4 Consensus size: 25
26489360 CTGTATAGTA
26489370 TAAGTTATGTAGGTTATGAAAATTATG
1 TAAGTTATGTA--TTATGAAAATTATG
* * *
26489397 TAAGTTATTTTTTTATGAAAATTAAG
1 TAAGTTA-TGTATTATGAAAATTATG
26489423 TAAGTTATGTATTATGAAAATTATG
1 TAAGTTATGTATTATGAAAATTATG
* * *
26489448 TAAGTTCA-ATATTATGTAAGTTATG
1 TAAGTT-ATGTATTATGAAAATTATG
* * * *
26489473 T-A-CTATGAAAATTATGTAAGTTATG
1 TAAGTTATG--TATTATGAAAATTATG
* * * *
26489498 TATGTTGTGTATTATATGTAAGTTATG
1 TAAGTTATGTA-T-TATGAAAATTATG
* * *
26489525 T-A--TGTGTATAATGAAAGTTATG
1 TAAGTTATGTATTATGAAAATTATG
* * * *
26489547 TAAGTTGTGTATAATGTAAGTTATG
1 TAAGTTATGTATTATGAAAATTATG
* * * **
26489572 TAAGTTAAGTATAAT-TAAGCTATG
1 TAAGTTATGTATTATGAAAATTATG
26489596 TAAGTTATGTA
1 TAAGTTATGTA
26489607 AGATGTGATA
Statistics
Matches: 174, Mismatches: 24, Indels: 27
0.77 0.11 0.12
Matches are distributed among these distances:
22 13 0.07
23 3 0.02
24 25 0.14
25 85 0.49
26 22 0.13
27 24 0.14
28 2 0.01
ACGTcount: A:0.36, C:0.01, G:0.19, T:0.44
Consensus pattern (25 bp):
TAAGTTATGTATTATGAAAATTATG
Found at i:26489441 original size:94 final size:92
Alignment explanation
Indices: 26489323--26489496 Score: 269
Period size: 94 Copynumber: 1.9 Consensus size: 92
26489313 TAAGTTCAAT
* ** *
26489323 ATTATGTAAGTTATGTATTATGAAAATTATGTAAGTTCTGTA-TAGTATAAGTTATGTAGGTTAT
1 ATTAAGTAAGTTATGTATTATGAAAATTATGTAAGTTCAATATTA-TATAAGTTATGTA--CTAT
26489387 GAAAATTATGTAAGTTATTTTTTTATGAAA
63 GAAAATTATGTAAGTTATTTTTTTATGAAA
*
26489417 ATTAAGTAAGTTATGTATTATGAAAATTATGTAAGTTCAATATTATGTAAGTTATGTACTATGAA
1 ATTAAGTAAGTTATGTATTATGAAAATTATGTAAGTTCAATATTATATAAGTTATGTACTATGAA
26489482 AATTATGTAAGTTAT
66 AATTATGTAAGTTAT
26489497 GTATGTTGTG
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
92 21 0.28
94 51 0.69
95 2 0.03
ACGTcount: A:0.38, C:0.02, G:0.16, T:0.44
Consensus pattern (92 bp):
ATTAAGTAAGTTATGTATTATGAAAATTATGTAAGTTCAATATTATATAAGTTATGTACTATGAA
AATTATGTAAGTTATTTTTTTATGAAA
Found at i:26489468 original size:41 final size:41
Alignment explanation
Indices: 26489417--26489494 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
26489407 TTTTATGAAA
*
26489417 ATTAAGTAAGTTATGTATTATGAAAATTATGTAAGTTCAAT
1 ATTAAGTAAGTTATGTACTATGAAAATTATGTAAGTTCAAT
*
26489458 ATTATGTAAGTTATGTACTATGAAAATTATGTAAGTT
1 ATTAAGTAAGTTATGTACTATGAAAATTATGTAAGTT
26489495 ATGTATGTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.40, C:0.03, G:0.15, T:0.42
Consensus pattern (41 bp):
ATTAAGTAAGTTATGTACTATGAAAATTATGTAAGTTCAAT
Found at i:26489516 original size:27 final size:24
Alignment explanation
Indices: 26489486--26489606 Score: 122
Period size: 25 Copynumber: 4.9 Consensus size: 24
26489476 TATGAAAATT
26489486 ATGTAAGTTATGTATGTTGTGTATTA
1 ATGTAAGTTATGTA-GTTGTGTA-TA
26489512 TATGTAAGTTATGTA--TGTGTATA
1 -ATGTAAGTTATGTAGTTGTGTATA
*
26489535 ATGAAAGTTATGTAAGTTGTGTATA
1 ATGTAAGTTATGT-AGTTGTGTATA
**
26489560 ATGTAAGTTATGTAAGTTAAGTATA
1 ATGTAAGTTATGT-AGTTGTGTATA
* *
26489585 AT-TAAGCTATGTAAGTTATGTA
1 ATGTAAGTTATGT-AGTTGTGTA
26489607 AGATGTGATA
Statistics
Matches: 85, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
22 12 0.14
23 3 0.04
24 24 0.28
25 32 0.38
27 14 0.16
ACGTcount: A:0.34, C:0.01, G:0.21, T:0.44
Consensus pattern (24 bp):
ATGTAAGTTATGTAGTTGTGTATA
Found at i:26489596 original size:49 final size:51
Alignment explanation
Indices: 26489486--26489631 Score: 153
Period size: 49 Copynumber: 2.9 Consensus size: 51
26489476 TATGAAAATT
* * *
26489486 ATGTAAGTTATGTATGTTGTGTATTATATGTAAGTTATGTATG-T--GTATA
1 ATGTAAGTTATGTAAGTTGTGTA-TAGATGTAAGTTATGTAAGTTAAGTATA
*
26489535 ATGAAAGTTATGTAAGTTGTGTATA-ATGTAAGTTATGTAAGTTAAGTATA
1 ATGTAAGTTATGTAAGTTGTGTATAGATGTAAGTTATGTAAGTTAAGTATA
* * *
26489585 AT-TAAGCTATGTAAGTTATGTA-AGATGTGATAGTCATGTAA-TTAAGT
1 ATGTAAGTTATGTAAGTTGTGTATAGATGT-A-AGTTATGTAAGTTAAGT
26489632 TATGTTTTTA
Statistics
Matches: 84, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
47 15 0.18
48 4 0.05
49 42 0.50
50 14 0.17
51 9 0.11
ACGTcount: A:0.34, C:0.01, G:0.22, T:0.42
Consensus pattern (51 bp):
ATGTAAGTTATGTAAGTTGTGTATAGATGTAAGTTATGTAAGTTAAGTATA
Found at i:26490324 original size:21 final size:21
Alignment explanation
Indices: 26490300--26490372 Score: 67
Period size: 21 Copynumber: 3.3 Consensus size: 21
26490290 AGATGTTTAT
26490300 ATAAATACGCTGAAAATATAA
1 ATAAATACGCTGAAAATATAA
*** *
26490321 ATAAATAATAT-AATATCAATAA
1 ATAAATACGCTGAAAAT--ATAA
26490343 TATTAAATACGCTGAAAATATAA
1 -A-TAAATACGCTGAAAATATAA
26490366 ATAAATA
1 ATAAATA
26490373 GTCCCAAAAC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
20 4 0.10
21 14 0.36
22 5 0.13
23 5 0.13
24 7 0.18
25 4 0.10
ACGTcount: A:0.59, C:0.07, G:0.05, T:0.29
Consensus pattern (21 bp):
ATAAATACGCTGAAAATATAA
Found at i:26490842 original size:16 final size:18
Alignment explanation
Indices: 26490762--26490832 Score: 101
Period size: 19 Copynumber: 3.9 Consensus size: 18
26490752 AGAATCACAT
26490762 ATGCTTAACATTC-AAA-
1 ATGCTTAACATTCAAAAC
*
26490778 ATGTTTAACATTCAAAAC
1 ATGCTTAACATTCAAAAC
26490796 ATAGCTTAACATTCAAAAC
1 AT-GCTTAACATTCAAAAC
26490815 TATGCTTAACATTCAAAA
1 -ATGCTTAACATTCAAAA
26490833 TGTTTAACAT
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
16 12 0.24
17 3 0.06
18 2 0.04
19 30 0.61
20 2 0.04
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.31
Consensus pattern (18 bp):
ATGCTTAACATTCAAAAC
Found at i:26492879 original size:7 final size:7
Alignment explanation
Indices: 26492866--26492947 Score: 58
Period size: 7 Copynumber: 11.7 Consensus size: 7
26492856 TAAAGCGGCT
26492866 TAAACCC
1 TAAACCC
*
26492873 CAAACCC
1 TAAACCC
*
26492880 TAAACCT
1 TAAACCC
26492887 TAAACCC
1 TAAACCC
26492894 TAAACTCC
1 TAAAC-CC
* *
26492902 CAAACCT
1 TAAACCC
26492909 TAAACCC
1 TAAACCC
* **
26492916 CAAACAT
1 TAAACCC
26492923 TAAA-CC
1 TAAACCC
* * *
26492929 TATATCA
1 TAAACCC
26492936 TAAACCC
1 TAAACCC
26492943 TAAAC
1 TAAAC
26492948 TCAAAACTCT
Statistics
Matches: 54, Mismatches: 19, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
6 3 0.06
7 45 0.83
8 6 0.11
ACGTcount: A:0.45, C:0.37, G:0.00, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:26492925 original size:14 final size:14
Alignment explanation
Indices: 26492864--26492928 Score: 76
Period size: 14 Copynumber: 4.6 Consensus size: 14
26492854 ACTAAAGCGG
26492864 CTTAAACCCCAAAC
1 CTTAAACCCCAAAC
* **
26492878 CCTAAACCTTAAAC
1 CTTAAACCCCAAAC
*
26492892 CCTAAACTCCCAAAC
1 CTTAAAC-CCCAAAC
26492907 CTTAAACCCCAAAC
1 CTTAAACCCCAAAC
*
26492921 ATTAAACC
1 CTTAAACC
26492929 TATATCATAA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
14 32 0.74
15 11 0.26
ACGTcount: A:0.43, C:0.40, G:0.00, T:0.17
Consensus pattern (14 bp):
CTTAAACCCCAAAC
Found at i:26492926 original size:29 final size:28
Alignment explanation
Indices: 26492865--26492928 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
26492855 CTAAAGCGGC
** *
26492865 TTAAACCCCAAACCCTAAACCTTAAACC
1 TTAAACCCCAAACCCTAAACCCCAAACA
* *
26492893 CTAAACTCCCAAACCTTAAACCCCAAACA
1 TTAAAC-CCCAAACCCTAAACCCCAAACA
26492922 TTAAACC
1 TTAAACC
26492929 TATATCATAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
28 6 0.21
29 23 0.79
ACGTcount: A:0.44, C:0.39, G:0.00, T:0.17
Consensus pattern (28 bp):
TTAAACCCCAAACCCTAAACCCCAAACA
Found at i:26493810 original size:113 final size:114
Alignment explanation
Indices: 26493421--26494149 Score: 1031
Period size: 113 Copynumber: 6.4 Consensus size: 114
26493411 CTATTGGCTC
* * * * * *
26493421 TATAACTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTACGGCGCTTTT-CACAAAGCACT
1 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGTG-TTTTGTACAATGCACC
* *
26493485 GTTAATACTGTGATTTAGCGGCGTGTTTT-CATAAGCGCCACTAATTCTAA
65 GCTAATACTGTGCTTTAGCGGCGT-TTTTCCATAAGCGCCACTAATTCTAA
* * * * *
26493535 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTACGGCGCTTTT-CACAAAGCACT
1 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGTG-TTTTGTACAATGCACC
* *
26493599 GTTAATACTGTGATTTAGCGGCGTGTTTT-CATAAGCGCCACTAATTCTAA
65 GCTAATACTGTGCTTTAGCGGCGT-TTTTCCATAAGCGCCACTAATTCTAA
* *
26493649 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGTGTTTTGTATAATGCGCCG
1 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGTGTTTTGTACAATGCACCG
26493714 CTAATACTG-GCTTTAGCGGCGTTTTTCCATAAGCGCCACTAATTCTAA
66 CTAATACTGTGCTTTAGCGGCGTTTTTCCATAAGCGCCACTAATTCTAA
* * * *
26493762 TATACCTCAAGGCCAAACGCTGCGTTTTGGTTAAGATATTTCGCGGTGTTTTGTATAATGCGCCG
1 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGTGTTTTGTACAATGCACCG
** *
26493827 CTAATACT-CCCTTTAGCGGCGTTTTTCCATAGGCGCCACTAATTCTAA
66 CTAATACTGTGCTTTAGCGGCGTTTTTCCATAAGCGCCACTAATTCTAA
* * * *
26493875 TATACCTCAAGGCCAAACGCTGCGTTTTGGTTAAGATATTTCGCGGTGTTTTGTATAATGCGCCG
1 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGTGTTTTGTACAATGCACCG
** *
26493940 CTAATACT-CCCTTTAGCGGCGTTTTTCCATAGGCGCCACTAATTCTAA
66 CTAATACTGTGCTTTAGCGGCGTTTTTCCATAAGCGCCACTAATTCTAA
* * * *
26493988 TATACCTCAAGACCAAACGCTGCGTTTTGATTAAGATATTTTACGGCGTTTTTTACAATGCACCG
1 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGTGTTTTGTACAATGCACCG
* * *
26494053 CTAATATTGTGCTTTAGCGGCGTTGTTGCATAAGCGCCACTAATTCTAA
66 CTAATACTGTGCTTTAGCGGCGTTTTTCCATAAGCGCCACTAATTCTAA
26494102 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGTG
1 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGTG
26494150 CTTGCAAATA
Statistics
Matches: 580, Mismatches: 31, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
112 4 0.01
113 322 0.56
114 254 0.44
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (114 bp):
TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGTGTTTTGTACAATGCACCG
CTAATACTGTGCTTTAGCGGCGTTTTTCCATAAGCGCCACTAATTCTAA
Found at i:26497318 original size:166 final size:166
Alignment explanation
Indices: 26497044--26497532 Score: 807
Period size: 166 Copynumber: 2.9 Consensus size: 166
26497034 TCTAAAATAG
* * *
26497044 GCATACTGTTAGTTCATGCCATTGTTTTAGATGTTAATTTTCTGTACATTACAGATACTGTGGCC
1 GCATACTATTAGTTCATGCCATTGTTTTAGATGTCAATTTTCTATACATTACAGATACTGTGGCC
* * * *
26497109 AGGGAAACATTAGATCAAGTTATGGCTAATGCAATTTCAAAATCTGGCTCTAATCGATCTGCAGT
66 AGGGAAACATTAGATCAAGTTATGGCTGATGCACTTTCAAAATCTGGTTCTAATCGATCTGCAGC
* * *
26497174 ATACATTTCATGTCTTATTTTTGCAATCGATTTGCA
131 ATACATTTCATGTCTTCTTTTTGCAATCGATCTACA
* *
26497210 GCATACTATTAATTCATGCCGTTGTTTTAGATGTCAATTTTCTATACATTACAGATACTGTGGCC
1 GCATACTATTAGTTCATGCCATTGTTTTAGATGTCAATTTTCTATACATTACAGATACTGTGGCC
* * *
26497275 AGGGAAACATTAGATCAAGTTATGGCTGATGCACTTTCAAAATCTGGTTGTAATCGAACTGCAAC
66 AGGGAAACATTAGATCAAGTTATGGCTGATGCACTTTCAAAATCTGGTTCTAATCGATCTGCAGC
26497340 ATACATTTCATGTCTTCTTTTTGCAATCGATCTACA
131 ATACATTTCATGTCTTCTTTTTGCAATCGATCTACA
**
26497376 GCATACTATTAGTTCATGCCATTGTTTTAGATGTCAATTTTCTATACATTACAGATGTTGTGGCC
1 GCATACTATTAGTTCATGCCATTGTTTTAGATGTCAATTTTCTATACATTACAGATACTGTGGCC
* *
26497441 AGGGAAACATTAGATCAAGTTATGGCAGATGCACTTTCAAAATATGGTTCTAATCGATCTGCAGC
66 AGGGAAACATTAGATCAAGTTATGGCTGATGCACTTTCAAAATCTGGTTCTAATCGATCTGCAGC
26497506 ATACATTTCATGTCTTCTTTTTGCAAT
131 ATACATTTCATGTCTTCTTTTTGCAAT
26497533 GGCATTTTAA
Statistics
Matches: 299, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
166 299 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (166 bp):
GCATACTATTAGTTCATGCCATTGTTTTAGATGTCAATTTTCTATACATTACAGATACTGTGGCC
AGGGAAACATTAGATCAAGTTATGGCTGATGCACTTTCAAAATCTGGTTCTAATCGATCTGCAGC
ATACATTTCATGTCTTCTTTTTGCAATCGATCTACA
Found at i:26503038 original size:24 final size:23
Alignment explanation
Indices: 26502991--26503049 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 23
26502981 TATTTTAAAA
* *
26502991 AAATA-TTTGAAATATAAATTTT
1 AAATATTTTTAAATATAAATATT
26503013 AAATATTTTTAAATAATAAATATT
1 AAATATTTTTAAAT-ATAAATATT
* *
26503037 AATTATTTATAAA
1 AAATATTTTTAAA
26503050 ATTTAATTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 5 0.16
23 7 0.23
24 19 0.61
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
AAATATTTTTAAATATAAATATT
Found at i:26503709 original size:33 final size:32
Alignment explanation
Indices: 26503672--26503734 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
26503662 TTTATTAAAA
* *
26503672 TTTTAAAAATTCAAATAATATAAAAATATTATT
1 TTTTAAAAATTAAAATAAT-TAAAAAAATTATT
*
26503705 TTTTAAAAATTAAAATTATTAAAAAAATTA
1 TTTTAAAAATTAAAATAATTAAAAAAATTA
26503735 ATTAATTGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 10 0.37
33 17 0.63
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (32 bp):
TTTTAAAAATTAAAATAATTAAAAAAATTATT
Found at i:26503726 original size:16 final size:16
Alignment explanation
Indices: 26503665--26503729 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 16
26503655 CAATTAATTT
26503665 ATTAAAATT-TTAAAA
1 ATTAAAATTATTAAAA
* *
26503680 ATTCAAATAATATAAAA
1 ATTAAAATTAT-TAAAA
* * *
26503697 A-TATTATTTTTTAAAA
1 ATTA-AAATTATTAAAA
26503713 ATTAAAATTATTAAAA
1 ATTAAAATTATTAAAA
26503729 A
1 A
26503730 AATTAATTAA
Statistics
Matches: 36, Mismatches: 10, Indels: 7
0.68 0.19 0.13
Matches are distributed among these distances:
15 7 0.19
16 18 0.50
17 11 0.31
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
ATTAAAATTATTAAAA
Found at i:26504334 original size:45 final size:45
Alignment explanation
Indices: 26504270--26504355 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
26504260 TCTTGACCAC
* * *
26504270 ATATAAATAATTAATAATAAATATTGTGTAATTTAATTAAAATTA
1 ATATAAATAATTAATAATAAATACTATATAATTTAATTAAAATTA
*
26504315 ATATAAATAATTTATAATAAATACTATATAATTTAATTAAA
1 ATATAAATAATTAATAATAAATACTATATAATTTAATTAAA
26504356 CATTTAGTAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.42
Consensus pattern (45 bp):
ATATAAATAATTAATAATAAATACTATATAATTTAATTAAAATTA
Found at i:26505337 original size:24 final size:25
Alignment explanation
Indices: 26505286--26505338 Score: 63
Period size: 27 Copynumber: 2.1 Consensus size: 25
26505276 CTAGTGGTGT
**
26505286 ATAAGATTGTACATTTTTTTTTGGTAA
1 ATAAGATTGTACA--TTTTTTTAATAA
26505313 ATAAGATTGTACA-TTTTTTAATAA
1 ATAAGATTGTACATTTTTTTAATAA
26505337 AT
1 AT
26505339 TATGTGATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 11 0.46
27 13 0.54
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.49
Consensus pattern (25 bp):
ATAAGATTGTACATTTTTTTAATAA
Found at i:26509061 original size:67 final size:67
Alignment explanation
Indices: 26508867--26509105 Score: 241
Period size: 67 Copynumber: 3.6 Consensus size: 67
26508857 TACTGCTACA
* * * * * *
26508867 GTGGACTCCATT-GACTGTCATAGTCGAGCCATGGTCTTACACCTTAATCCTTATTTTTAAAGTC
1 GTGGACTCTATTGGA-TGCCATAGTCGAGCTATGGTCTTACACCTTAATCCCTATGTTTAATGTC
*
26508931 CT-
65 TTG
** * * *
26508933 GTAAAACTCTGTTGGATGCCATAGCCGAGCTATGGTCTTACACCTGAATCCACT-TGTTTAATGT
1 GT-GGACTCTATTGGATGCCATAGTCGAGCTATGGTCTTACACCTTAATCC-CTATGTTTAATGT
26508997 CTTG
64 CTTG
* * *
26509001 GTGGACTCTATTGGATGCCATAGTCGAGTTATGGTCTTAAACCTTAATCCCTATGTTTAATATCT
1 GTGGACTCTATTGGATGCCATAGTCGAGCTATGGTCTTACACCTTAATCCCTATGTTTAATGTCT
26509066 TG
66 TG
* * * ** *
26509068 ATGGACTCAATTGGTTGCCATAACCGAACTATGGTCTT
1 GTGGACTCTATTGGATGCCATAGTCGAGCTATGGTCTT
26509106 GCAAACCTCT
Statistics
Matches: 141, Mismatches: 27, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
66 4 0.03
67 132 0.94
68 5 0.04
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (67 bp):
GTGGACTCTATTGGATGCCATAGTCGAGCTATGGTCTTACACCTTAATCCCTATGTTTAATGTCT
TG
Found at i:26511871 original size:38 final size:39
Alignment explanation
Indices: 26511782--26511881 Score: 114
Period size: 39 Copynumber: 2.6 Consensus size: 39
26511772 CGAATATAAC
* * *
26511782 AATTATAACTACCATAATTAAAATAATATTTGGCTGAAA
1 AATTATAATTACAATAATTATAATAATATTTGGCTGAAA
* * *
26511821 AATTACAATTACAATAATTATAATAATATTT-GATCG-TA
1 AATTATAATTACAATAATTATAATAATATTTGGCT-GAAA
*
26511859 AATTATAATTACAATTATTATAA
1 AATTATAATTACAATAATTATAA
26511882 CAAGGATTTA
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
38 24 0.46
39 28 0.54
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (39 bp):
AATTATAATTACAATAATTATAATAATATTTGGCTGAAA
Found at i:26537421 original size:22 final size:24
Alignment explanation
Indices: 26537394--26537438 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
26537384 TTTTTGCTAT
*
26537394 AAAATAAA-AAGATAGGA-AGTAA
1 AAAATAAAGAAAATAGGAGAGTAA
26537416 AAAATAAAGAAAATAGGAGAGTA
1 AAAATAAAGAAAATAGGAGAGTA
26537439 TTGATCAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 8 0.40
23 8 0.40
24 4 0.20
ACGTcount: A:0.67, C:0.00, G:0.20, T:0.13
Consensus pattern (24 bp):
AAAATAAAGAAAATAGGAGAGTAA
Found at i:26540101 original size:18 final size:21
Alignment explanation
Indices: 26540078--26540115 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 21
26540068 CAATTTATTT
26540078 TTATAT-TG-ATA-AATATAA
1 TTATATGTGTATATAATATAA
26540096 TTATATGTGTATATAATATA
1 TTATATGTGTATATAATATA
26540116 TAAATATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.35
19 2 0.12
20 3 0.18
21 6 0.35
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (21 bp):
TTATATGTGTATATAATATAA
Found at i:26540132 original size:29 final size:29
Alignment explanation
Indices: 26540086--26540142 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
26540076 TTTTATATTG
*
26540086 ATAAATATAATTATATGTGTATAT-AATAT
1 ATAAATATAATAATATGT-TATATCAATAT
26540115 ATAAATATAA-AATGATGTTATATCAATA
1 ATAAATATAATAAT-ATGTTATATCAATA
26540143 ATTATGTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 7 0.28
29 18 0.72
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.40
Consensus pattern (29 bp):
ATAAATATAATAATATGTTATATCAATAT
Found at i:26542079 original size:20 final size:21
Alignment explanation
Indices: 26542050--26542088 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
26542040 TAAAATAAAG
26542050 TTTAAAATAATTTT-AAAAAA
1 TTTAAAATAATTTTCAAAAAA
*
26542070 TTTAATATAATTTTCAAAA
1 TTTAAAATAATTTTCAAAA
26542089 TTCAAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTAAAATAATTTTCAAAAAA
Found at i:26542797 original size:18 final size:18
Alignment explanation
Indices: 26542771--26542810 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
26542761 GAAAATGTAA
26542771 TTTACCAATTCCTTTTTG
1 TTTACCAATTCCTTTTTG
*
26542789 TTTATCAATTCCTTTTTG
1 TTTACCAATTCCTTTTTG
26542807 TTTA
1 TTTA
26542811 AGTTTCAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.17, G:0.05, T:0.60
Consensus pattern (18 bp):
TTTACCAATTCCTTTTTG
Found at i:26549313 original size:5 final size:5
Alignment explanation
Indices: 26549303--26549330 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
26549293 CTTTTTTCCA
26549303 CATCC CATCC CATCC CATCC CATCC CAT
1 CATCC CATCC CATCC CATCC CATCC CAT
26549331 ACCTTCACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.57, G:0.00, T:0.21
Consensus pattern (5 bp):
CATCC
Found at i:26552048 original size:16 final size:18
Alignment explanation
Indices: 26552013--26552048 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
26552003 GTTAGTAGGG
26552013 TATAAATACAACTTTATA
1 TATAAATACAACTTTATA
26552031 TATAAATACAACTTTATA
1 TATAAATACAACTTTATA
26552049 AACCCTTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
TATAAATACAACTTTATA
Found at i:26560387 original size:21 final size:20
Alignment explanation
Indices: 26560353--26560407 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 20
26560343 ACATTTTGTT
*
26560353 GCTATATATTTTTTAATAGGA
1 GCTA-ATATTTTTTAATAGAA
26560374 GCTAATATTGTTTTAATAGAA
1 GCTAATATT-TTTTAATAGAA
26560395 GCTAATATTTTTT
1 GCTAATATTTTTT
26560408 TTATTTTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 9 0.28
21 23 0.72
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.49
Consensus pattern (20 bp):
GCTAATATTTTTTAATAGAA
Found at i:26569424 original size:14 final size:14
Alignment explanation
Indices: 26569389--26569461 Score: 60
Period size: 14 Copynumber: 4.9 Consensus size: 14
26569379 TTATTGATAT
*
26569389 TATAAAAATAAAAA
1 TATAAAAATTAAAA
*
26569403 TAT-CAAATTAAAA
1 TATAAAAATTAAAA
26569416 TATAAAAATTAAATTGA
1 TATAAAAATTAAA---A
26569433 TATAGAAAAATTAAAA
1 TAT--AAAAATTAAAA
26569449 -ATTAAAAATTAAA
1 TA-TAAAAATTAAA
26569462 TAAACAAGGG
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
13 11 0.22
14 21 0.43
15 1 0.02
16 2 0.04
17 4 0.08
19 10 0.20
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (14 bp):
TATAAAAATTAAAA
Found at i:26569429 original size:19 final size:19
Alignment explanation
Indices: 26569391--26569447 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
26569381 ATTGATATTA
26569391 TAAAA-ATAAAAATATCAAAT
1 TAAAATATAAAAAT-T-AAAT
26569411 TAAAATATAAAAATTAAAT
1 TAAAATATAAAAATTAAAT
* * *
26569430 TGATATAGAAAAATTAAA
1 TAAAATATAAAAATTAAA
26569448 AATTAAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 19 0.58
20 6 0.18
21 8 0.24
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.28
Consensus pattern (19 bp):
TAAAATATAAAAATTAAAT
Found at i:26570120 original size:16 final size:16
Alignment explanation
Indices: 26570095--26570149 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
26570085 AAAAAAATTC
26570095 AAAT-TATTTTTAAAA
1 AAATATATTTTTAAAA
26570110 AAATATATTTTTAAAA
1 AAATATATTTTTAAAA
* **
26570126 AATTATAATTTTTTTAA
1 AAATAT-ATTTTTAAAA
26570143 AAATATA
1 AAATATA
26570150 ACAAATATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
15 4 0.12
16 17 0.50
17 13 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AAATATATTTTTAAAA
Found at i:26570144 original size:17 final size:17
Alignment explanation
Indices: 26570096--26570150 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 17
26570086 AAAAAATTCA
*
26570096 AATTATTTTTAAAAAAAT
1 AATT-TTTTTAAAAATAT
*
26570114 -ATATTTTTAAAAAATTAT
1 AAT-TTTTTTAAAAA-TAT
26570132 AATTTTTTTAAAAATAT
1 AATTTTTTTAAAAATAT
26570149 AA
1 AA
26570151 CAAATATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
17 16 0.52
18 13 0.42
19 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AATTTTTTTAAAAATAT
Found at i:26570862 original size:15 final size:16
Alignment explanation
Indices: 26570827--26570864 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
26570817 AACTCCCTTC
*
26570827 AAAATTTATAAAAATT
1 AAAATTAATAAAAATT
*
26570843 TAAATTAATAAAAA-T
1 AAAATTAATAAAAATT
26570858 AAAATTA
1 AAAATTA
26570865 TACTTTAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAAATTAATAAAAATT
Found at i:26574394 original size:35 final size:35
Alignment explanation
Indices: 26574328--26574394 Score: 80
Period size: 35 Copynumber: 1.9 Consensus size: 35
26574318 AATCCCTTCA
* * * *
26574328 AAACACACCAAGGGGCTCCAAAGTTCCAAGCCACC
1 AAACACACCAAAGAGCACCAAAGTGCCAAGCCACC
* *
26574363 AAACACACCAAAGAGCACCTAAGTGCTAAGCC
1 AAACACACCAAAGAGCACCAAAGTGCCAAGCC
26574395 TGAAAGCGTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 26 1.00
ACGTcount: A:0.40, C:0.34, G:0.16, T:0.09
Consensus pattern (35 bp):
AAACACACCAAAGAGCACCAAAGTGCCAAGCCACC
Found at i:26577809 original size:19 final size:19
Alignment explanation
Indices: 26577785--26577822 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
26577775 TTAGTGTTAG
26577785 TTAATTAAG-TTAAATTAAA
1 TTAATTAAGATT-AATTAAA
*
26577804 TTAATTTAGATTAATTAAA
1 TTAATTAAGATTAATTAAA
26577823 GGTTAAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (19 bp):
TTAATTAAGATTAATTAAA
Found at i:26578672 original size:12 final size:13
Alignment explanation
Indices: 26578654--26578691 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
26578644 CCGTAAAGAA
26578654 ATGATAAATTGAT
1 ATGATAAATTGAT
26578667 -TGATAAATTGAAT
1 ATGATAAATTG-AT
*
26578680 ATGATGAATTGA
1 ATGATAAATTGA
26578692 AAATTGAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 10 0.45
13 3 0.14
14 9 0.41
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.37
Consensus pattern (13 bp):
ATGATAAATTGAT
Found at i:26595501 original size:24 final size:24
Alignment explanation
Indices: 26595473--26595519 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
26595463 AATCAATTTC
*
26595473 TCAATCCAATATATATATTTCAAA
1 TCAATCCAATATATATATGTCAAA
*
26595497 TCAATTCAATATATATATGTCAA
1 TCAATCCAATATATATATGTCAA
26595520 TCATCTAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (24 bp):
TCAATCCAATATATATATGTCAAA
Found at i:26597481 original size:23 final size:23
Alignment explanation
Indices: 26597461--26597505 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
26597451 TTTCTTACTA
*
26597461 TAGTAATTTTCGGGGTATTACAG
1 TAGTAATTTTCGGGATATTACAG
26597484 TAGTAATTTTCGGGATATTACA
1 TAGTAATTTTCGGGATATTACA
26597506 AACACTCACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (23 bp):
TAGTAATTTTCGGGATATTACAG
Found at i:26598659 original size:168 final size:168
Alignment explanation
Indices: 26598465--26598781 Score: 420
Period size: 168 Copynumber: 1.9 Consensus size: 168
26598455 TTTTTATTAA
* ** *
26598465 TTTTCTTAAAAAATATAAAAAGATAAAAATATCATCACAATTGTAAAACTAATTTTAAATATGAA
1 TTTTCGTAAAAAATATAAAAAGATAAAAATATCATCACAATAATAAAACTAATTTTAAATAAGAA
* * * * * * *
26598530 -AGAGTTAATTAGTAATTTAACCAACTGAATTGCTGTCACTTAACTCGTGTCACCAAACTCAGTA
66 GAGA-CTAATTAGTAATTTAACCAACTCAACTGCTGTCACTTAACTCATGACACAAAACTCAATA
26598594 AACGACCTAATATTAGTAGATATGTAATTTTGTTTTTGG
130 AACGACCTAATATTAGTAGATATGTAATTTTGTTTTTGG
** * * * *
26598633 TTTTCGTAAAAAATATGCAAAGATAAAAATTTCATCATAATAATATAACTTATTTTAAATAAGAA
1 TTTTCGTAAAAAATATAAAAAGATAAAAATATCATCACAATAATAAAACTAATTTTAAATAAGAA
* * * *
26598698 GAGACTAATTAGTAATTTAACCAACTCAGCTGGTGTCACTTTACTCATGACACAAAACTTAATAA
66 GAGACTAATTAGTAATTTAACCAACTCAACTGCTGTCACTTAACTCATGACACAAAACTCAATAA
*
26598763 ACGACTTAATATTAGTAGA
131 ACGACCTAATATTAGTAGA
26598782 GATAAAAAGA
Statistics
Matches: 126, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
168 123 0.98
169 3 0.02
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.34
Consensus pattern (168 bp):
TTTTCGTAAAAAATATAAAAAGATAAAAATATCATCACAATAATAAAACTAATTTTAAATAAGAA
GAGACTAATTAGTAATTTAACCAACTCAACTGCTGTCACTTAACTCATGACACAAAACTCAATAA
ACGACCTAATATTAGTAGATATGTAATTTTGTTTTTGG
Found at i:26603241 original size:1 final size:1
Alignment explanation
Indices: 26603231--26603331 Score: 58
Period size: 1 Copynumber: 101.0 Consensus size: 1
26603221 GCATGAACAT
* * * * * * * * * *
26603231 AAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * *
26603296 TAAAAATAAAAATAAAAATAAAAATAAAAATAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
26603332 TAATAAATAA
Statistics
Matches: 68, Mismatches: 32, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
1 68 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (1 bp):
A
Found at i:26603348 original size:6 final size:6
Alignment explanation
Indices: 26603229--26603347 Score: 220
Period size: 6 Copynumber: 19.7 Consensus size: 6
26603219 GCGCATGAAC
26603229 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
26603277 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
*
26603325 ATAAAA ATAATAA ATAATA ATAA
1 ATAAAA ATAA-AA ATAAAA ATAA
26603348 TGATACAAGA
Statistics
Matches: 111, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
6 105 0.95
7 6 0.05
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:26603602 original size:23 final size:20
Alignment explanation
Indices: 26603557--26603602 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 20
26603547 GATTTGAAAT
*
26603557 AAAAAATATACAAATCAATA
1 AAAAAATATACAAATCAACA
26603577 AAAAAATTATACACGAATCAACA
1 AAAAAA-TATACA--AATCAACA
26603600 AAA
1 AAA
26603603 TAAGAACGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 6 0.27
21 6 0.27
23 10 0.45
ACGTcount: A:0.67, C:0.13, G:0.02, T:0.17
Consensus pattern (20 bp):
AAAAAATATACAAATCAACA
Found at i:26603826 original size:19 final size:19
Alignment explanation
Indices: 26603802--26603847 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26603792 AATCATATCT
**
26603802 TCTAAGATCGGATACCATA
1 TCTAAGATCACATACCATA
* *
26603821 TCTAAGATTACATATCATA
1 TCTAAGATCACATACCATA
26603840 TCTAAGAT
1 TCTAAGAT
26603848 TGCATATCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (19 bp):
TCTAAGATCACATACCATA
Found at i:26603848 original size:19 final size:19
Alignment explanation
Indices: 26603817--26603855 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
26603807 GATCGGATAC
26603817 CATATCTAAGATTACATAT
1 CATATCTAAGATTACATAT
*
26603836 CATATCTAAGATTGCATAT
1 CATATCTAAGATTACATAT
26603855 C
1 C
26603856 CATTAAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (19 bp):
CATATCTAAGATTACATAT
Found at i:26603864 original size:17 final size:19
Alignment explanation
Indices: 26603820--26603866 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
26603810 CGGATACCAT
*
26603820 ATCTAAGATTACATATCAT
1 ATCTAAGATTACATATCAC
*
26603839 ATCTAAGATTGCATATC-C
1 ATCTAAGATTACATATCAC
26603857 AT-TAAGATTA
1 ATCTAAGATTA
26603867 TGTTTCCATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 7 0.28
18 2 0.08
19 16 0.64
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (19 bp):
ATCTAAGATTACATATCAC
Found at i:26604457 original size:45 final size:45
Alignment explanation
Indices: 26604400--26604917 Score: 232
Period size: 45 Copynumber: 11.7 Consensus size: 45
26604390 TTGTTTATTT
* * * *
26604400 AGTCTGCCCCACTGCAATTTCAGGGGGATAGGACTTGATTTCTTG
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCGATTTCTTG
* * *
26604445 AGTCTGCTCCACTGCAACTTCAGTGAGATAAGACTCGCTTTCTTG
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCGATTTCTTG
* * *
26604490 GGTCTGCTCCACTGCAACTTT-AGGGAGATAAGACCCGA-TGC---
1 AGTCTGCTCCACTGCAA-TTTCAGGGAGATAAGACTCGATTTCTTG
* ** * * *
26604531 AATCTGCT-TTCTGCAACTTCAGAGAGATAAGATCTGTGA-TT-TT-
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGA-CT-CGATTTCTTG
* ** * * * *
26604574 AATCCACTCCACTGCAACTTT-AGGGAGATAGGA-TTG-TTGGCTTT
1 AGTCTGCTCCACTGCAA-TTTCAGGGAGATAAGACTCGATT-TCTTG
* * * * *** *
26604618 AATCCGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTC
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCGATTTCTTG
* * * * * *
26604663 AGTCTGC-CTCACTACAACTTCA-GGAGGATAAGGCTTGCTTACTT-
1 AGTCTGCTC-CACTGCAATTTCAGGGA-GATAAGACTCGATTTCTTG
* * *** *
26604707 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTC
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCGATTTCTTG
* * * * * *
26604752 AGTCTGC-CTCACTACAACTTCA-GGAGGATAAGGCTTGCTTACTT-
1 AGTCTGCTC-CACTGCAATTTCAGGGA-GATAAGACTCGATTTCTTG
* * *** *
26604796 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTC
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCGATTTCTTG
* * * * * *
26604841 AGTCTGC-CTCACTACAACTTCA-GGAGGATAAGGCTTGCTTACTT-
1 AGTCTGCTC-CACTGCAATTTCAGGGA-GATAAGACTCGATTTCTTG
*
26604885 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGA
26604918 TTCGCCATCT
Statistics
Matches: 367, Mismatches: 77, Indels: 59
0.73 0.15 0.12
Matches are distributed among these distances:
39 2 0.01
40 17 0.05
41 10 0.03
42 4 0.01
43 10 0.03
44 144 0.39
45 178 0.49
46 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (45 bp):
AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCGATTTCTTG
Found at i:26604593 original size:44 final size:44
Alignment explanation
Indices: 26604541--26604652 Score: 154
Period size: 44 Copynumber: 2.5 Consensus size: 44
26604531 AATCTGCTTT
* *
26604541 CTGCAACTTCAGAGAGATAAGATCTG-TGATTTTAATCCACTCCA
1 CTGCAACTTCAGGGAGATAAGAT-TGTTGACTTTAATCCACTCCA
* * * *
26604585 CTGCAACTTTAGGGAGATAGGATTGTTGGCTTTAATCCGCTCCA
1 CTGCAACTTCAGGGAGATAAGATTGTTGACTTTAATCCACTCCA
26604629 CTGCAACTTCAGGGAGATAAGATT
1 CTGCAACTTCAGGGAGATAAGATT
26604653 CGCCATCTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
43 2 0.03
44 57 0.97
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (44 bp):
CTGCAACTTCAGGGAGATAAGATTGTTGACTTTAATCCACTCCA
Done.