Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 91 of 187
Found at i:26604727 original size:89 final size:89
Alignment explanation
Indices: 26604623--26604934 Score: 624
Period size: 89 Copynumber: 3.5 Consensus size: 89
26604613 GCTTTAATCC
26604623 GCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAACTTCAGGA
1 GCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAACTTCAGGA
26604688 GGATAAGGCTTGCTTACTTAGTCT
66 GGATAAGGCTTGCTTACTTAGTCT
26604712 GCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAACTTCAGGA
1 GCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAACTTCAGGA
26604777 GGATAAGGCTTGCTTACTTAGTCT
66 GGATAAGGCTTGCTTACTTAGTCT
26604801 GCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAACTTCAGGA
1 GCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAACTTCAGGA
26604866 GGATAAGGCTTGCTTACTTAGTCT
66 GGATAAGGCTTGCTTACTTAGTCT
26604890 GCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCT
26604935 TTTAAATTGC
Statistics
Matches: 223, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 223 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (89 bp):
GCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAACTTCAGGA
GGATAAGGCTTGCTTACTTAGTCT
Found at i:26605479 original size:88 final size:88
Alignment explanation
Indices: 26605371--26606641 Score: 2121
Period size: 88 Copynumber: 14.4 Consensus size: 88
26605361 GCCGGGGTCA
* * * * * * *
26605371 TCGATTTGCTTGGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCACTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
*
26605436 CCAGGGAGGCAAGGCTGGTGTCT
66 CAAGGGAGGCAAGGCTGGTGTCT
* * * * ** * *
26605459 TCGATCTGCTTCGTTGTCGGTGTAGGAAGGCAAGATCTGTTATTTTTGACCTGCTCCGCTACAAC
1 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
* *
26605524 CCAGGGAGGCAAGGTTGGTGTCT
66 CAAGGGAGGCAAGGCTGGTGTCT
* * * * * *
26605547 TCGATCTGCTTCGTTGTCGGTGCAAGAAGGCAATATCTGCTATTTTTAACCTGCTCTGCTACAAC
1 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
* *
26605612 CCAGGGAGGTAAGGCTGGTGTCT
66 CAAGGGAGGCAAGGCTGGTGTCT
* * * * *
26605635 TCGATATGCTTCGCTGTCGGTGCTAGAAGGCAAGATCTGCAATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
26605700 CAAGGGAGGCAAGGCTGGTGTCT
66 CAAGGGAGGCAAGGCTGGTGTCT
26605723 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
26605788 CAAGGGAGGCAAGGCTGGTGTCT
66 CAAGGGAGGCAAGGCTGGTGTCT
26605811 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
26605876 CAAGGGAGGCAAGGCTGGTGTCT
66 CAAGGGAGGCAAGGCTGGTGTCT
26605899 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
26605964 CAAGGGAGGCAAGGCTGGTGTCT
66 CAAGGGAGGCAAGGCTGGTGTCT
26605987 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
26606052 CAAGGGAGGCAAGGCTGGTGTCT
66 CAAGGGAGGCAAGGCTGGTGTCT
26606075 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
26606140 CAAGGGAGGCAAGGCTGGTGTCT
66 CAAGGGAGGCAAGGCTGGTGTCT
26606163 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
26606228 CAAGGGAGGCAAGGCTGGTGTCT
66 CAAGGGAGGCAAGGCTGGTGTCT
26606251 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
26606316 CAAGGGAGGCAAGGCTGGTGTCT
66 CAAGGGAGGCAAGGCTGGTGTCT
26606339 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
26606404 CAAGGGAGGCAAGGCTGGTGTCT
66 CAAGGGAGGCAAGGCTGGTGTCT
26606427 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
* * *
26606492 CCAGGGAGGCGAGGCTAGTGTCT
66 CAAGGGAGGCAAGGCTGGTGTCT
* * * *
26606515 TCGATCTACTTCGCTGTC-GATGTAAGAAGGCAAGATCTGCTATTTTTTAACCTGCTCCGCTACA
1 TCGATCTGCTTCGCTGTCAG-TGCAAGAAGGCAAGATCTACTA-TTTTTAACCTGCTCCGCTGCA
* * *
26606579 ACCCAGGGAAGCAAGGTTGGTGTCT
64 ACCAAGGGAGGCAAGGCTGGTGTCT
* * *
26606604 TCGATCTGCTTCGCTGTCGGTGTAGGAAGGCAAGATCT
1 TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCT
26606642 GTTATATCCA
Statistics
Matches: 1135, Mismatches: 45, Indels: 5
0.96 0.04 0.00
Matches are distributed among these distances:
87 1 0.00
88 1058 0.93
89 75 0.07
90 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (88 bp):
TCGATCTGCTTCGCTGTCAGTGCAAGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCTGCAAC
CAAGGGAGGCAAGGCTGGTGTCT
Found at i:26612882 original size:57 final size:58
Alignment explanation
Indices: 26612812--26612930 Score: 204
Period size: 58 Copynumber: 2.1 Consensus size: 58
26612802 CTATAGAATT
* *
26612812 TATAACAAAATATATATAATGCATTTAT-GAAAATGAAGAAAAATATATAAATATACA
1 TATAACAAAATATATATAATGCATTTATAAAAAATAAAGAAAAATATATAAATATACA
*
26612869 TATAACAAAATATATATAATGCCTTTATAAAAAATAAAGAAAAATATATAAATATACA
1 TATAACAAAATATATATAATGCATTTATAAAAAATAAAGAAAAATATATAAATATACA
26612927 TATA
1 TATA
26612931 TATATTATAA
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
57 27 0.47
58 31 0.53
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (58 bp):
TATAACAAAATATATATAATGCATTTATAAAAAATAAAGAAAAATATATAAATATACA
Found at i:26613254 original size:7 final size:7
Alignment explanation
Indices: 26613218--26613260 Score: 58
Period size: 6 Copynumber: 6.7 Consensus size: 7
26613208 GCGCATGAAT
26613218 ATAA-AA
1 ATAATAA
26613224 ATAA-AA
1 ATAATAA
26613230 ATAA-AA
1 ATAATAA
26613236 ATAATAA
1 ATAATAA
26613243 ATAATAA
1 ATAATAA
26613250 ATAAT-A
1 ATAATAA
26613256 ATAAT
1 ATAAT
26613261 GATACAAGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 22 0.61
7 14 0.39
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
ATAATAA
Found at i:26613740 original size:19 final size:19
Alignment explanation
Indices: 26613714--26613802 Score: 151
Period size: 19 Copynumber: 4.7 Consensus size: 19
26613704 AATTATATCT
26613714 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* *
26613733 TTTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
26613752 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
26613771 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
26613790 TCTAAGATTGCAT
1 TCTAAGATTGCAT
26613803 GTCCTTGAAG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 64 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:26613761 original size:38 final size:38
Alignment explanation
Indices: 26613714--26613802 Score: 169
Period size: 38 Copynumber: 2.3 Consensus size: 38
26613704 AATTATATCT
*
26613714 TCTAAGATTGCATATCATATTTAAGATTACATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTACATATCATA
26613752 TCTAAGATTGCATATCATATCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTACATATCATA
26613790 TCTAAGATTGCAT
1 TCTAAGATTGCAT
26613803 GTCCTTGAAG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (38 bp):
TCTAAGATTGCATATCATATCTAAGATTACATATCATA
Found at i:26632745 original size:24 final size:24
Alignment explanation
Indices: 26632697--26632743 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
26632687 ACTGGTCATA
*
26632697 GAGAGAATTAAGGAGGGATATTTG
1 GAGAGAATTAAGGAGGAATATTTG
*
26632721 GAGAGATTTAAGGAGAGAATATT
1 GAGAGAATTAAGGAG-GAATATT
26632744 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.40, C:0.00, G:0.34, T:0.26
Consensus pattern (24 bp):
GAGAGAATTAAGGAGGAATATTTG
Found at i:26633867 original size:20 final size:20
Alignment explanation
Indices: 26633844--26633903 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
26633834 ATAGGTAAAA
* *
26633844 TGACCAAAATACCCCTATAG
1 TGACCGAAATACCCCCATAG
26633864 TGACCGAAATACCCCCATAG
1 TGACCGAAATACCCCCATAG
* *
26633884 TGACTGAAATACCCTCATAG
1 TGACCGAAATACCCCCATAG
26633904 ACCAAAATCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.30, G:0.13, T:0.20
Consensus pattern (20 bp):
TGACCGAAATACCCCCATAG
Found at i:26633951 original size:27 final size:27
Alignment explanation
Indices: 26633917--26634315 Score: 386
Period size: 27 Copynumber: 15.1 Consensus size: 27
26633907 AAAATCACCC
* *
26633917 AGGGTAAAATGACCGAAATACCCTCAT
1 AGGGTAAAATGACCAAAATACCCCCAT
26633944 AGGGTAAAATGACCAAAATACCCCCAT
1 AGGGTAAAATGACCAAAATACCCCCAT
*
26633971 AGGGTAAAATAACCAAAATA-CCCCAT
1 AGGGTAAAATGACCAAAATACCCCCAT
*
26633997 A--GCAAAATGACCAAAATACCCCCAT
1 AGGGTAAAATGACCAAAATACCCCCAT
* * **
26634022 AGGGTAAAATGATCGAAATACCCTAAT
1 AGGGTAAAATGACCAAAATACCCCCAT
* ** *
26634049 AGGGTAAAAAGACTGAAATACCCTCAT
1 AGGGTAAAATGACCAAAATACCCCCAT
26634076 AGGGTAAAATGACCAAAATACCCCCAT
1 AGGGTAAAATGACCAAAATACCCCCAT
* ***
26634103 AAGGTAAAATGATTGAAATACCCCCAT
1 AGGGTAAAATGACCAAAATACCCCCAT
***
26634130 AGGGTAAAATGAATGAAATACCCCCAT
1 AGGGTAAAATGACCAAAATACCCCCAT
** ** **
26634157 AGGAAAAAATGACTTAAATACCTTCAT
1 AGGGTAAAATGACCAAAATACCCCCAT
*
26634184 A--G-----TGACCAAAATACCCCTAT
1 AGGGTAAAATGACCAAAATACCCCCAT
* *
26634204 AAGGTAAAATGACCAAAATATCCCCAT
1 AGGGTAAAATGACCAAAATACCCCCAT
* *
26634231 CGGGTAGAATGACCAAAATACCCCCAT
1 AGGGTAAAATGACCAAAATACCCCCAT
*** *
26634258 AGGGTAAAATGATTGAAATACCCCTAAT
1 AGGGTAAAATGACCAAAATACCCC-CAT
* * *
26634286 AGGGTAGAATGATCGAAATACCCCCAT
1 AGGGTAAAATGACCAAAATACCCCCAT
26634313 AGG
1 AGG
26634316 AGATGAAATG
Statistics
Matches: 310, Mismatches: 51, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
20 14 0.05
22 1 0.00
24 15 0.05
25 7 0.02
26 7 0.02
27 242 0.78
28 24 0.08
ACGTcount: A:0.44, C:0.22, G:0.16, T:0.19
Consensus pattern (27 bp):
AGGGTAAAATGACCAAAATACCCCCAT
Found at i:26634257 original size:155 final size:156
Alignment explanation
Indices: 26634037--26634316 Score: 424
Period size: 155 Copynumber: 1.8 Consensus size: 156
26634027 AAAATGATCG
* **
26634037 AAATACCCTAATAGGGTAAAAAGACTGAAATACCCTCATAGGGTAAAATGACCAAAATACCCCCA
1 AAATACCCTAATAAGGTAAAAAGACCAAAATACCCTCATAGGGTAAAATGACCAAAATACCCCCA
*
26634102 TAAGGTAAAATGATTGAAATACCCC-CATAGGGTAAAATGAAT-GAAATACCCCCATAGGAAAAA
66 TAAGGTAAAATGATTGAAATACCCCTAATAGGGTAAAATG-ATCGAAATACCCCCATAGGAAAAA
26634165 ATGACTTAAATACCTTCATAGTGACCA
130 ATGACTTAAATACCTTCATAGTGACCA
* * *
26634192 AAATACCCCT-ATAAGGTAAAATGACCAAAATATCCC-CATCGGGTAGAATGACCAAAATACCCC
1 AAATA-CCCTAATAAGGTAAAAAGACCAAAATA-CCCTCATAGGGTAAAATGACCAAAATACCCC
* *
26634255 CATAGGGTAAAATGATTGAAATACCCCTAATAGGGTAGAATGATCGAAATACCCCCATAGGA
64 CATAAGGTAAAATGATTGAAATACCCCTAATAGGGTAAAATGATCGAAATACCCCCATAGGA
26634317 GATGAAATGA
Statistics
Matches: 112, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
155 76 0.68
156 36 0.32
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.20
Consensus pattern (156 bp):
AAATACCCTAATAAGGTAAAAAGACCAAAATACCCTCATAGGGTAAAATGACCAAAATACCCCCA
TAAGGTAAAATGATTGAAATACCCCTAATAGGGTAAAATGATCGAAATACCCCCATAGGAAAAAA
TGACTTAAATACCTTCATAGTGACCA
Found at i:26634259 original size:74 final size:74
Alignment explanation
Indices: 26634118--26634259 Score: 158
Period size: 74 Copynumber: 1.9 Consensus size: 74
26634108 AAAATGATTG
* ** ** **
26634118 AAATACCCCCATAGGGTAAAATGAATGAAATACCCCCATAGGAAAAAATGACTTAAATACCTTCA
1 AAATACCCCCATAAGGTAAAATGAACAAAATACCCCCATAGGAAAAAATGACCAAAATACCCCCA
26634183 TAGTGACCA
66 TAGTGACCA
* * * * ** *
26634192 AAATACCCCTATAAGGTAAAATGACCAAAATATCCCCATCGGGTAGAATGACCAAAATACCCCCA
1 AAATACCCCCATAAGGTAAAATGAACAAAATACCCCCATAGGAAAAAATGACCAAAATACCCCCA
26634257 TAG
66 TAG
26634260 GGTAAAATGA
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
74 54 1.00
ACGTcount: A:0.44, C:0.24, G:0.13, T:0.19
Consensus pattern (74 bp):
AAATACCCCCATAAGGTAAAATGAACAAAATACCCCCATAGGAAAAAATGACCAAAATACCCCCA
TAGTGACCA
Found at i:26640168 original size:27 final size:27
Alignment explanation
Indices: 26640134--26640535 Score: 390
Period size: 27 Copynumber: 14.6 Consensus size: 27
26640124 AGACCCAAAA
* * *
26640134 ATAGGGTAAAATGACCAAAATATCCCA
1 ATAGGGTAAAATGACCGAAATACCCCC
* *
26640161 ATAGGGTAAAATAACCGAAATACCACC
1 ATAGGGTAAAATGACCGAAATACCCCC
26640188 ATAGGGTAAAACGATCGAAATAACCGAAATACCCCC
1 ATAGGGT-AAA--AT-G-----ACCGAAATACCCCC
* *
26640224 ATAAGGTAAAATGACCGAAATAACCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * * * *
26640251 GTAGGGTAAAAAGACCAAAATACTCTC
1 ATAGGGTAAAATGACCGAAATACCCCC
* *
26640278 GTAGGGTAAAATGACTGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * ** *
26640305 ATAGGATAAAAGGACTAAAATACTCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
*** *
26640332 ATAGGGTAAAATGATTAAAATACGCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* *
26640359 ATAGGGTAAAATGATCGAAATACCCCT
1 ATAGGGTAAAATGACCGAAATACCCCC
26640386 ATAGGGTAAAATGACCGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* **
26640413 ATAGGGTTAAATGATTGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
** *
26640440 ATAGGGTAAAATGATTGAAATACCCCT
1 ATAGGGTAAAATGACCGAAATACCCCC
** **
26640467 ATAGGGTAAAATGAATGAAATACCTTC
1 ATAGGGTAAAATGACCGAAATACCCCC
* *
26640494 ATAGAGTAAAATGACCGAAATACCCTC
1 ATAGGGTAAAATGACCGAAATACCCCC
26640521 ATAGGGTAAAATGAC
1 ATAGGGTAAAATGAC
26640536 TGTTATACCC
Statistics
Matches: 316, Mismatches: 50, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
27 286 0.91
28 3 0.01
30 2 0.01
32 1 0.00
33 2 0.01
35 3 0.01
36 19 0.06
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.19
Consensus pattern (27 bp):
ATAGGGTAAAATGACCGAAATACCCCC
Found at i:26640216 original size:36 final size:36
Alignment explanation
Indices: 26640169--26640248 Score: 124
Period size: 36 Copynumber: 2.2 Consensus size: 36
26640159 CAATAGGGTA
* *
26640169 AAATAACCGAAATACCACCATAGGGTAAAACGATCG
1 AAATAACCGAAATACCACCATAAGGTAAAACGACCG
* *
26640205 AAATAACCGAAATACCCCCATAAGGTAAAATGACCG
1 AAATAACCGAAATACCACCATAAGGTAAAACGACCG
26640241 AAATAACC
1 AAATAACC
26640249 CCGTAGGGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.49, C:0.24, G:0.14, T:0.14
Consensus pattern (36 bp):
AAATAACCGAAATACCACCATAAGGTAAAACGACCG
Found at i:26640256 original size:63 final size:63
Alignment explanation
Indices: 26640142--26640261 Score: 161
Period size: 63 Copynumber: 1.9 Consensus size: 63
26640132 AAATAGGGTA
* * *
26640142 AAATGACCAAAATATCCCAATAGGGTAAAATAACCGAAATACCACCATAGGGTAAAACGATCG
1 AAATAACCAAAATACCCCAATAAGGTAAAATAACCGAAATACCACCATAGGGTAAAACGATCG
* * * *
26640205 AAATAACCGAAATACCCCCATAAGGTAAAATGACCGAAATAACC-CCGTAGGGTAAAA
1 AAATAACCAAAATACCCCAATAAGGTAAAATAACCGAAAT-ACCACCATAGGGTAAAA
26640262 AGACCAAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
63 46 0.94
64 3 0.06
ACGTcount: A:0.47, C:0.22, G:0.16, T:0.15
Consensus pattern (63 bp):
AAATAACCAAAATACCCCAATAAGGTAAAATAACCGAAATACCACCATAGGGTAAAACGATCG
Found at i:26640805 original size:26 final size:26
Alignment explanation
Indices: 26640769--26640823 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
26640759 TTTGCGACAT
* *
26640769 ATACTGTTACTGGCAGCTTTGCTGTG
1 ATACTATTACTGGCAGCTTTGCTGCG
26640795 ATACTATTACTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
26640821 ATA
1 ATA
26640824 TTGGTGTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.36
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCG
Found at i:26640973 original size:28 final size:28
Alignment explanation
Indices: 26640933--26641041 Score: 166
Period size: 28 Copynumber: 3.9 Consensus size: 28
26640923 TGCATTGTTA
26640933 CTGTATTGGGCTAAGGCCCACACTGATT
1 CTGTATTGGGCTAAGGCCCACACTGATT
26640961 CTGTATTGGGCTAAGGCCCACACTG-TT
1 CTGTATTGGGCTAAGGCCCACACTGATT
* *
26640988 ACTATATTGGGCTAAGGCCCACACTGATA
1 -CTGTATTGGGCTAAGGCCCACACTGATT
* *
26641017 CTGTATTAGGCTAAGACCCACACTG
1 CTGTATTGGGCTAAGGCCCACACTG
26641042 TACTGTCATT
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
27 2 0.03
28 71 0.96
29 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (28 bp):
CTGTATTGGGCTAAGGCCCACACTGATT
Found at i:26641011 original size:56 final size:56
Alignment explanation
Indices: 26640928--26641042 Score: 194
Period size: 56 Copynumber: 2.1 Consensus size: 56
26640918 TGCACTGCAT
* * * *
26640928 TGTTACTGTATTGGGCTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCCACAC
1 TGTTACTATATTGGGCTAAGGCCCACACTGATACTGTATTAGGCTAAGACCCACAC
26640984 TGTTACTATATTGGGCTAAGGCCCACACTGATACTGTATTAGGCTAAGACCCACAC
1 TGTTACTATATTGGGCTAAGGCCCACACTGATACTGTATTAGGCTAAGACCCACAC
26641040 TGT
1 TGT
26641043 ACTGTCATTG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (56 bp):
TGTTACTATATTGGGCTAAGGCCCACACTGATACTGTATTAGGCTAAGACCCACAC
Found at i:26641058 original size:27 final size:28
Alignment explanation
Indices: 26640944--26641058 Score: 81
Period size: 28 Copynumber: 4.1 Consensus size: 28
26640934 TGTATTGGGC
* * * **
26640944 TAAGGCCCACACTGATTCTGTATTGGGC
1 TAAGACCCACACTGATACTGTATTAGAA
* * * * **
26640972 TAAGGCCCACACTGTTACTATATTGGGC
1 TAAGACCCACACTGATACTGTATTAGAA
* **
26641000 TAAGGCCCACACTGATACTGTATTAGGC
1 TAAGACCCACACTGATACTGTATTAGAA
26641028 TAAGACCCACACTG-TACTGTCATT-GAA
1 TAAGACCCACACTGATACTGT-ATTAGAA
26641055 TAAG
1 TAAG
26641059 GCTTAGGCCT
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
27 11 0.14
28 66 0.86
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (28 bp):
TAAGACCCACACTGATACTGTATTAGAA
Found at i:26641532 original size:21 final size:22
Alignment explanation
Indices: 26641486--26641535 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
26641476 TTGATTGTGT
*
26641486 GTTTTTTAAACATTAAAAAGAG
1 GTTTTTAAAACATTAAAAAGAG
*
26641508 GTTTTTAAAAC-TTAGAAATGA-
1 GTTTTTAAAACATTA-AAAAGAG
26641529 GTTTTTA
1 GTTTTTA
26641536 CCAACAACTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.40, C:0.04, G:0.14, T:0.42
Consensus pattern (22 bp):
GTTTTTAAAACATTAAAAAGAG
Found at i:26646080 original size:7 final size:7
Alignment explanation
Indices: 26646068--26646104 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
26646058 GCTAGTTTGA
26646068 GCTTTCG
1 GCTTTCG
26646075 GCTTTCG
1 GCTTTCG
26646082 GCTTTCG
1 GCTTTCG
26646089 GCTTTCG
1 GCTTTCG
26646096 GCTTTCG
1 GCTTTCG
26646103 GC
1 GC
26646105 GAAAGTGTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.00, C:0.30, G:0.30, T:0.41
Consensus pattern (7 bp):
GCTTTCG
Found at i:26647669 original size:18 final size:18
Alignment explanation
Indices: 26647646--26647685 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
26647636 TATGCTAGTT
*
26647646 TGGTATTGATTTTCCAGG
1 TGGTATTGATTTTCCAAG
26647664 TGGTATTGATTTTCCAAG
1 TGGTATTGATTTTCCAAG
26647682 TGGT
1 TGGT
26647686 TTCGATACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.10, G:0.28, T:0.45
Consensus pattern (18 bp):
TGGTATTGATTTTCCAAG
Found at i:26650787 original size:165 final size:166
Alignment explanation
Indices: 26650612--26650911 Score: 410
Period size: 165 Copynumber: 1.8 Consensus size: 166
26650602 TAAAGAAAAA
* *
26650612 AAAGATAAAAATATCATCAAAATAGTAAAACTTATTTTAAATAAGAAAG-AGTGAA-TTAGTCAT
1 AAAGATAAAAATATCATCAAAATAATAAAACTTATTTTAAATAAG-AAGTAGTGAACTT-GTAAT
*
26650675 TTAACCAACTGAATTGGTATCACTTAACTCGTGTCACAAAAC-TAGTAAA-CGACTTAATATGAG
64 TTAACCAACTGAATTGGTATCACTTAACTCGTGACACAAAACTTAG-AAAGCGACTTAATATGAG
*
26650738 TAGAGATATAATTTTTTTCGGTTTTCTTAAAAAATATGC
128 AAGAGATATAATTTTTTTCGGTTTTCTTAAAAAATATGC
* * * * * * *
26650777 AAAGATAAAAATTTCATCATACTAATATAACTTATTTTAAATAAGAAGTGGTTAACTTTTAATTT
1 AAAGATAAAAATATCATCAAAATAATAAAACTTATTTTAAATAAGAAGTAGTGAACTTGTAATTT
* * * *
26650842 AACCAACTGAGTTGGTGTCACTTAACTCGTGACACCAAACTTAGAAAGCGACTTAATATTAGAAG
66 AACCAACTGAATTGGTATCACTTAACTCGTGACACAAAACTTAGAAAGCGACTTAATATGAGAAG
26650907 AGATA
131 AGATA
26650912 AAAAGATAAA
Statistics
Matches: 116, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
164 3 0.03
165 88 0.76
166 25 0.22
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.32
Consensus pattern (166 bp):
AAAGATAAAAATATCATCAAAATAATAAAACTTATTTTAAATAAGAAGTAGTGAACTTGTAATTT
AACCAACTGAATTGGTATCACTTAACTCGTGACACAAAACTTAGAAAGCGACTTAATATGAGAAG
AGATATAATTTTTTTCGGTTTTCTTAAAAAATATGC
Found at i:26676109 original size:27 final size:27
Alignment explanation
Indices: 26676075--26676237 Score: 204
Period size: 27 Copynumber: 6.0 Consensus size: 27
26676065 TTGTTAACTA
*
26676075 TACCGAAATACCCTCGATGGGTAAACT
1 TACCGAAATACCCTCGATGGGTAAAAT
26676102 TACCGAAATACCCTCGATGGGTAAAAT
1 TACCGAAATACCCTCGATGGGTAAAAT
*
26676129 TATCGAAATACCCTCGATGGGTAAAAT
1 TACCGAAATACCCTCGATGGGTAAAAT
*
26676156 TACTGAAATACCCTCGATGGGTAAAAT
1 TACCGAAATACCCTCGATGGGTAAAAT
* * * *
26676183 TACCAAAATA-CTTCTGATGAGTTAAAT
1 TACCGAAATACCCTC-GATGGGTAAAAT
* *
26676210 TACC-ATAATACCCCCGTTAGGGTAAAAT
1 TACCGA-AATACCCTCGAT-GGGTAAAAT
26676238 GACTGCTATG
Statistics
Matches: 118, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
26 4 0.03
27 105 0.89
28 9 0.08
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.26
Consensus pattern (27 bp):
TACCGAAATACCCTCGATGGGTAAAAT
Found at i:26682407 original size:27 final size:27
Alignment explanation
Indices: 26682369--26682450 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
26682359 TTGTTAACTG
26682369 TATCAAAATA-CCCTCGATGGGTAAAAT
1 TATCAAAATACCCCT-GATGGGTAAAAT
*
26682396 TATCGAAATACCCCTGATGGGTAAAAT
1 TATCAAAATACCCCTGATGGGTAAAAT
* *
26682423 TACCATAATACCCCT-ATTAGGGTAAAAT
1 TATCAAAATACCCCTGA-T-GGGTAAAAT
26682451 GATATATATA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 34 0.71
28 13 0.27
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.27
Consensus pattern (27 bp):
TATCAAAATACCCCTGATGGGTAAAAT
Found at i:26682588 original size:27 final size:27
Alignment explanation
Indices: 26682549--26682621 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
26682539 ATGAAGGAAG
26682549 TACTGTT-TCTGGTGGCTCTGCCACAGT-
1 TACTGTTAT-TGGTGGCTCTGCCACA-TA
*
26682576 TACTGTTATTGGTGGCTTTGCCACATA
1 TACTGTTATTGGTGGCTCTGCCACATA
*
26682603 TACTG-TATTGG-AGCTCTGC
1 TACTGTTATTGGTGGCTCTGC
26682622 TGCGTTATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
25 6 0.15
26 7 0.17
27 27 0.66
28 1 0.02
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (27 bp):
TACTGTTATTGGTGGCTCTGCCACATA
Found at i:26685810 original size:5 final size:6
Alignment explanation
Indices: 26685795--26685826 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
26685785 ATCTTGTGGC
26685795 AAAAAG AAAAAG AAAAAG AAAAAG -AAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
26685827 GAGATGGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:26696360 original size:60 final size:60
Alignment explanation
Indices: 26696246--26696369 Score: 133
Period size: 60 Copynumber: 2.1 Consensus size: 60
26696236 AGAATGGGAA
* ** * *
26696246 TGAT-CTTGGCCTCAATGATGATCTGAATGGTCAAGATGCTAATCCTCTTTTTTGTAGAG
1 TGATACTTGGCCTCAATGATAATCTGAATGGTCAAGACCCTAATCCTCATGTTTGTAGAG
* * * * * * *
26696305 TGATACTTGGTCTGAATGATAATTTGAATGGTCAAGGCCCTAATCTTCATGTTTGTGGGG
1 TGATACTTGGCCTCAATGATAATCTGAATGGTCAAGACCCTAATCCTCATGTTTGTAGAG
26696365 TGATA
1 TGATA
26696370 GATGACTAAG
Statistics
Matches: 52, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
59 4 0.08
60 48 0.92
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (60 bp):
TGATACTTGGCCTCAATGATAATCTGAATGGTCAAGACCCTAATCCTCATGTTTGTAGAG
Found at i:26708965 original size:40 final size:40
Alignment explanation
Indices: 26708910--26708986 Score: 136
Period size: 40 Copynumber: 1.9 Consensus size: 40
26708900 AGAATCTTGA
*
26708910 CTAATAATTTTATATCTTCATTTAAGTCATCTTCAAATCG
1 CTAATAATTTTATATCTTCATTTAAGCCATCTTCAAATCG
*
26708950 CTAATAATTTTATATCTTTATTTAAGCCATCTTCAAA
1 CTAATAATTTTATATCTTCATTTAAGCCATCTTCAAA
26708987 CTGCTTACAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.34, C:0.17, G:0.04, T:0.45
Consensus pattern (40 bp):
CTAATAATTTTATATCTTCATTTAAGCCATCTTCAAATCG
Found at i:26711446 original size:50 final size:50
Alignment explanation
Indices: 26711326--26711437 Score: 131
Period size: 50 Copynumber: 2.3 Consensus size: 50
26711316 GTCATAATAA
* * *
26711326 GGAAGCTCATATGAGCC-AATATCGAGAAGCTCCGGAGAGCCATTAATCG
1 GGAAGCTCATAAGATCCAAATATCGAGAAGCTCCGGAGAGACATTAATCG
* *
26711375 GGAAGCTCATAAGATCCAAATATCGGGAAGCT-CGTGAGGGACATATAA-CG
1 GGAAGCTCATAAGATCCAAATATCGAGAAGCTCCG-GAGAGACAT-TAATCG
*
26711425 GGATGCTCATAAG
1 GGAAGCTCATAAG
26711438 TGCTAAATAA
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
49 17 0.31
50 34 0.63
51 3 0.06
ACGTcount: A:0.34, C:0.20, G:0.28, T:0.19
Consensus pattern (50 bp):
GGAAGCTCATAAGATCCAAATATCGAGAAGCTCCGGAGAGACATTAATCG
Found at i:26712452 original size:21 final size:21
Alignment explanation
Indices: 26712426--26712468 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
26712416 TACCCAAACA
*
26712426 CTAAACCCAATTAGCCTTAGC
1 CTAAACCCAATTAGCCTAAGC
*
26712447 CTAAACCTAATTAGCCTAAGC
1 CTAAACCCAATTAGCCTAAGC
26712468 C
1 C
26712469 CAATAACCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.33, G:0.09, T:0.23
Consensus pattern (21 bp):
CTAAACCCAATTAGCCTAAGC
Found at i:26713569 original size:15 final size:16
Alignment explanation
Indices: 26713545--26713585 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
26713535 TCATATATAC
26713545 ATTCTTTAATAT-TTT
1 ATTCTTTAATATGTTT
*
26713560 ATTCTATAATATGTTT
1 ATTCTTTAATATGTTT
*
26713576 TTTCTTTAAT
1 ATTCTTTAAT
26713586 TTCACTCATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.63
Consensus pattern (16 bp):
ATTCTTTAATATGTTT
Found at i:26716638 original size:27 final size:27
Alignment explanation
Indices: 26716295--26716638 Score: 421
Period size: 27 Copynumber: 12.7 Consensus size: 27
26716285 ACCGAAAGAT
26716295 CCCCATAGGGTAAAATGA-TCGAAATAC
1 CCCCATAGGGTAAAATGACT-GAAATAC
*
26716322 CCCCATAGGGTAAAATGATTGAAATAC
1 CCCCATAGGGTAAAATGACTGAAATAC
*
26716349 CCTCATAGGGTAAAATGA-TCGAAATAC
1 CCCCATAGGGTAAAATGACT-GAAATAC
* * *
26716376 CCTCATAGGATAAATTGACT-AAAGTAC
1 CCCCATAGGGTAAAATGACTGAAA-TAC
* * * *
26716403 CCCCGTAGGGTAAAGTGA-TCAAAATAT
1 CCCCATAGGGTAAAATGACT-GAAATAC
*
26716430 CCCCATAGGGTAAAATTA-TCGAAATAC
1 CCCCATAGGGTAAAATGACT-GAAATAC
*
26716457 CCTCATAGGGTAAAATGA-TCGAAATAC
1 CCCCATAGGGTAAAATGACT-GAAATAC
*
26716484 CCCCATAGGGTAAAATGACTAAAATAC
1 CCCCATAGGGTAAAATGACTGAAATAC
*
26716511 CCTCATAGGGTAAAATGACTGAAATAC
1 CCCCATAGGGTAAAATGACTGAAATAC
* *
26716538 CTCTATAGGGTAAAATGACTGAAATAC
1 CCCCATAGGGTAAAATGACTGAAATAC
*
26716565 CCCTATAGGGTAAAATGACTGAAATAC
1 CCCCATAGGGTAAAATGACTGAAATAC
* *
26716592 CCCTATAAGGTAAAATGACTGAAATAC
1 CCCCATAGGGTAAAATGACTGAAATAC
*
26716619 CCCCATAGGATAAAATGACT
1 CCCCATAGGGTAAAATGACT
26716639 ATTATACCCC
Statistics
Matches: 283, Mismatches: 27, Indels: 14
0.87 0.08 0.04
Matches are distributed among these distances:
26 5 0.02
27 272 0.96
28 6 0.02
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.22
Consensus pattern (27 bp):
CCCCATAGGGTAAAATGACTGAAATAC
Found at i:26718390 original size:24 final size:25
Alignment explanation
Indices: 26718358--26718428 Score: 76
Period size: 24 Copynumber: 2.9 Consensus size: 25
26718348 TGCTAAAGAG
26718358 CCCACTCAAGCTACTACTGAAG-CA
1 CCCACTCAAGCTACTACTGAAGACA
* * *
26718382 CCCACTCAACCTGCTACCG-AGACA
1 CCCACTCAAGCTACTACTGAAGACA
*
26718406 CCTACTCAAAG-TACTACTGAAGA
1 CCCACTC-AAGCTACTACTGAAGA
26718429 GCCTAAAAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
23 2 0.05
24 30 0.81
25 5 0.14
ACGTcount: A:0.34, C:0.37, G:0.13, T:0.17
Consensus pattern (25 bp):
CCCACTCAAGCTACTACTGAAGACA
Found at i:26721039 original size:26 final size:27
Alignment explanation
Indices: 26721009--26721066 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 27
26720999 ATAACAGTGT
26721009 GTGGGCCTTAGCCCAATATAGTAA-CA
1 GTGGGCCTTAGCCCAATATAGTAATCA
26721035 GTGGGGGCCTTAGCCCAATATAGTAATCA
1 GT--GGGCCTTAGCCCAATATAGTAATCA
26721064 GTG
1 GTG
26721067 CAATGCAGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
26 2 0.07
27 1 0.03
28 22 0.76
29 4 0.14
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (27 bp):
GTGGGCCTTAGCCCAATATAGTAATCA
Found at i:26721051 original size:28 final size:30
Alignment explanation
Indices: 26720977--26721066 Score: 121
Period size: 30 Copynumber: 3.0 Consensus size: 30
26720967 TATCAGTAGA
* * * *
26720977 GTGTAGGCCTTAGCCCATTACAATAACAGT
1 GTGTGGGCCTTAGCCCAATATAGTAACAGT
26721007 GTGTGGGCCTTAGCCCAATATAGTAACAGT
1 GTGTGGGCCTTAGCCCAATATAGTAACAGT
26721037 G-G-GGGCCTTAGCCCAATATAGTAATCAGT
1 GTGTGGGCCTTAGCCCAATATAGTAA-CAGT
26721066 G
1 G
26721067 CAATGCAGTA
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
28 22 0.40
29 6 0.11
30 27 0.49
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (30 bp):
GTGTGGGCCTTAGCCCAATATAGTAACAGT
Found at i:26721227 original size:26 final size:26
Alignment explanation
Indices: 26721174--26721234 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
26721164 CCAATATCGT
* *
26721174 AGCAAAGCTGCCAATAATAGTGACGC
1 AGCAAAGCTGCCAATAACAGTAACGC
* *
26721200 AGCAAAGCTGCCAGTAACAGTAATGC
1 AGCAAAGCTGCCAATAACAGTAACGC
*
26721226 AGTAAAGCT
1 AGCAAAGCT
26721235 ACTAGTAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.16
Consensus pattern (26 bp):
AGCAAAGCTGCCAATAACAGTAACGC
Found at i:26721241 original size:26 final size:26
Alignment explanation
Indices: 26721174--26721266 Score: 69
Period size: 26 Copynumber: 3.5 Consensus size: 26
26721164 CCAATATCGT
* * * * *
26721174 AGCAAAGCTGCCAATAATAGTGACGC
1 AGCAAAGCTACCAGTAACAGTAATGC
*
26721200 AGCAAAGCTGCCAGTAACAGTAATGC
1 AGCAAAGCTACCAGTAACAGTAATGC
* * * *
26721226 AGTAAAGCTACTAGTAATAGTATATGT
1 AGCAAAGCTACCAGTAACAGTA-ATGC
* *
26721253 GGCAAAGCCACCAG
1 AGCAAAGCTACCAG
26721267 AATAGTATAA
Statistics
Matches: 53, Mismatches: 13, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
26 40 0.75
27 13 0.25
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (26 bp):
AGCAAAGCTACCAGTAACAGTAATGC
Found at i:26721423 original size:27 final size:26
Alignment explanation
Indices: 26721390--26721584 Score: 158
Period size: 27 Copynumber: 7.3 Consensus size: 26
26721380 GAGTATAACA
* *
26721390 GTCATTTTACCATATGGGGGTATTTTG
1 GTCATTTTACC-TTTAGGGGTATTTTG
* *
26721417 GTAATTTTATCCTTTAGGGGTATTTCG
1 GTCATTTTA-CCTTTAGGGGTATTTTG
26721444 GTCATTTTACCTTT-GAGGGTATTTTG
1 GTCATTTTACCTTTAG-GGGTATTTTG
* *
26721470 ATCATATTACCCTTTAGGGGTATTTTG
1 GTCATTTTA-CCTTTAGGGGTATTTTG
* **
26721497 GTCATTTTACCTTTCAAGGGTATTCCG
1 GTCATTTTACCTTT-AGGGGTATTTTG
* * * *
26721524 ATCATTTTACCCTTCGGGCGTATTTCG
1 GTCATTTTACCTTTAGGG-GTATTTTG
* * * * *
26721551 ATTATTTTACCCTTTAAGGATATTTCG
1 GTCATTTTA-CCTTTAGGGGTATTTTG
26721578 GTCATTT
1 GTCATTT
26721585 GCCCATGAAT
Statistics
Matches: 136, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.01
26 28 0.21
27 98 0.72
28 9 0.07
ACGTcount: A:0.19, C:0.16, G:0.19, T:0.46
Consensus pattern (26 bp):
GTCATTTTACCTTTAGGGGTATTTTG
Found at i:26721484 original size:53 final size:53
Alignment explanation
Indices: 26721407--26721584 Score: 196
Period size: 53 Copynumber: 3.3 Consensus size: 53
26721397 TACCATATGG
* * * *
26721407 GGGTATTTTGGTAATTTTATCCTTTAGGGGTATTTCGGTCATTTTACCTTTGA
1 GGGTATTTTGATCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCTTTAA
* *
26721460 GGGTATTTTGATCATATTACCCTTTAGGGGTATTTTGGTCATTTTACCTTTCAA
1 GGGTATTTTGATCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCTTT-AA
** * * *
26721514 GGGTATTCCGATCATTTTACCC-TTCGGGCGTATTTCGATTATTTTACCCTTTAA
1 GGGTATTTTGATCATTTTACCCTTTAGGG-GTATTTCGGTCATTTTA-CCTTTAA
* * *
26721568 GGATATTTCGGTCATTT
1 GGGTATTTTGATCATTT
26721585 GCCCATGAAT
Statistics
Matches: 106, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
53 51 0.48
54 50 0.47
55 5 0.05
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.46
Consensus pattern (53 bp):
GGGTATTTTGATCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCTTTAA
Found at i:26721547 original size:54 final size:53
Alignment explanation
Indices: 26721420--26721584 Score: 197
Period size: 54 Copynumber: 3.1 Consensus size: 53
26721410 TATTTTGGTA
* * *
26721420 ATTTTATCCTTTAGGGGTATTTCGGTCATTTTACCTTTGAGGGTATTTTGATC
1 ATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCTTTAAGGGTATTTCGATC
* * *
26721473 ATATTACCCTTTAGGGGTATTTTGGTCATTTTACCTTTCAAGGGTATTCCGATC
1 ATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCTTT-AAGGGTATTTCGATC
* * * * *
26721527 ATTTTACCC-TTCGGGCGTATTTCGATTATTTTACCCTTTAAGGATATTTCGGTC
1 ATTTTACCCTTTAGGG-GTATTTCGGTCATTTTA-CCTTTAAGGGTATTTCGATC
26721581 ATTT
1 ATTT
26721585 GCCCATGAAT
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
53 40 0.42
54 50 0.53
55 5 0.05
ACGTcount: A:0.19, C:0.17, G:0.18, T:0.46
Consensus pattern (53 bp):
ATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCTTTAAGGGTATTTCGATC
Found at i:26724311 original size:136 final size:136
Alignment explanation
Indices: 26724067--26724339 Score: 345
Period size: 136 Copynumber: 2.0 Consensus size: 136
26724057 ACACGTGACA
* * * * *
26724067 TTTATCTCTACTAATATTAAGTTGTTTACTGATTTCAGTGTCATAAGTTCAGTGACAACAACTAA
1 TTTATCTCTACTAATATTAAGTCGTTTACTAATTTCAGTGACACAAGTTAAGTGACAACAACTAA
* * *
26724132 GTTGGTTAAATTACCAATTAAACCTTTCATATTTAAAATAAGTTATCTTATTACGATGATATTTT
66 GTTGGTTAAATTACCAATTAAACCTTTCATATTAAAAATAAGTTATATTATTACGATGATATTTC
26724197 TATCTT
131 TATCTT
** *
26724203 TTTATCTCTACTAATATTAAGTCGTTTACTAATTTTGGTGACACGAGTTAAGTGAC-ACTAACTC
1 TTTATCTCTACTAATATTAAGTCGTTTACTAATTTCAGTGACACAAGTTAAGTGACAAC-AACT-
* * * * * *
26724267 AA-TTGGTTAAATTACTAATT-AGCCTCTTCTTATTAAAAATAAGTTATATTGTTATGGTGATAT
64 AAGTTGGTTAAATTACCAATTAAACCT-TTCATATTAAAAATAAGTTATATTATTACGATGATAT
26724330 TTCTATCTT
128 TTCTATCTT
26724339 T
1 T
26724340 GCCTATTTTT
Statistics
Matches: 117, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
135 6 0.05
136 109 0.93
137 2 0.02
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (136 bp):
TTTATCTCTACTAATATTAAGTCGTTTACTAATTTCAGTGACACAAGTTAAGTGACAACAACTAA
GTTGGTTAAATTACCAATTAAACCTTTCATATTAAAAATAAGTTATATTATTACGATGATATTTC
TATCTT
Found at i:26724513 original size:164 final size:165
Alignment explanation
Indices: 26724208--26724521 Score: 393
Period size: 164 Copynumber: 1.9 Consensus size: 165
26724198 ATCTTTTTAT
* * *
26724208 CTCTACTAATATTAAGTCGTTTACTAATTTTGGTGACACGAGTTAAGTGACACTAACTCAATTGG
1 CTCTACTAATATTAAGTCGTTTAATAAGTTTGGTGACACGAGTTAAGTGACACCAACTCAATTGG
* * * * *
26724273 TTAAATTACTAATTAGCCTCTTCTTATTAAAAATAAGTTATATTGTTATGGTGATATTTCTATCT
66 TTAAATTACTAATTAACCTCTTCATATTAAAAATAAGTTATACTATTATGATGATATTTCTATCT
* *
26724338 TTGCCTATTTTTTAGGAAAACAAAAAAAAATACAA
131 TTGCATATTTTTTAAGAAAACAAAAAAAAATACAA
* *
26724373 CTCTACTAATA-TAAGTCGTTTAATGAGTTTGGTGACACGAGTTAAGTGACACCAA-TACAGTTG
1 CTCTACTAATATTAAGTCGTTTAATAAGTTTGGTGACACGAGTTAAGTGACACCAACT-CAATTG
* * * * * * *
26724436 GTTAATTTACTAATTAA-CTCTTTCATATTTAAATTATGTTTTACTATTGTGATGATATTTTTAT
65 GTTAAATTACTAATTAACCTC-TTCATATTAAAAATAAGTTATACTATTATGATGATATTTCTAT
*
26724500 CATTT-TATATTTTTTAAGAAAA
129 C-TTTGCATATTTTTTAAGAAAA
26724522 TTAATAAAAA
Statistics
Matches: 126, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
163 4 0.03
164 108 0.86
165 14 0.11
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (165 bp):
CTCTACTAATATTAAGTCGTTTAATAAGTTTGGTGACACGAGTTAAGTGACACCAACTCAATTGG
TTAAATTACTAATTAACCTCTTCATATTAAAAATAAGTTATACTATTATGATGATATTTCTATCT
TTGCATATTTTTTAAGAAAACAAAAAAAAATACAA
Found at i:26731613 original size:42 final size:43
Alignment explanation
Indices: 26731505--26731681 Score: 198
Period size: 42 Copynumber: 4.2 Consensus size: 43
26731495 TTTTAGAAAT
* *
26731505 AAACGCCGCTATAGATCATGGCCTTTAACGACGCTTTTCCCAC
1 AAACGCCGCTATAGATCATGACCTTTAGCGACGCTTTTCCCAC
* * *
26731548 AAACACCGCTATAGATCATGACCTTTAGCGGCGCTTTT-GCAC
1 AAACGCCGCTATAGATCATGACCTTTAGCGACGCTTTTCCCAC
** *
26731590 AGGCGCCGCTATAGGTCGA-GACCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTATAGATC-ATGACCTTTAGCGACGCTTTTCCCAC
* * * * * *
26731633 AAACGCCGCTATAAAACA-AACCTTTAGCGACGCTTCTCACAA
1 AAACGCCGCTATAGATCATGACCTTTAGCGACGCTTTTCCCAC
26731675 AAACGCC
1 AAACGCC
26731682 ACTAAAAACA
Statistics
Matches: 112, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
42 62 0.55
43 50 0.45
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTATAGATCATGACCTTTAGCGACGCTTTTCCCAC
Found at i:26731727 original size:16 final size:14
Alignment explanation
Indices: 26731686--26731728 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 14
26731676 AACGCCACTA
26731686 AAAACATAATATTTT
1 AAAA-ATAATATTTT
26731701 AAAAA-AATATTTT
1 AAAAATAATATTTT
26731714 AATCAAATAATATTT
1 AA--AAATAATATTT
26731729 ATTTTTATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 10 0.40
14 1 0.04
15 7 0.28
16 7 0.28
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (14 bp):
AAAAATAATATTTT
Found at i:26735483 original size:149 final size:149
Alignment explanation
Indices: 26735212--26736309 Score: 1948
Period size: 149 Copynumber: 7.4 Consensus size: 149
26735202 TTTTTGCGGC
* * * * *
26735212 CATAAAAGCGCCGCAAAAAAATTCATTTTGAATAAAACTACGCCGTTTTGCTATGCTATGCTAAA
1 CATAAAAGCGTCGCAAAAAAAATCGTTTTAAACAAAACTACGCCGTTTTGCTATGCTATGCTAAA
* * * *
26735277 AGGAGGCTA-TTTTTTAAAAGTAAAATTATTTTGTAGCGTTTTTTATATAAACGCCGCTATTGCT
66 AGGGGGCTATTTTTTTAAAAGTAAAATTATTTTATGGCGTTTTTTATATAAACGCCACTATTGCT
*
26735341 TCCCTTTAGCGGCGTTTTT
131 TACCTTTAGCGGCGTTTTT
* * * * * *
26735360 CGTAAAAGCGCCGTAAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGTTATGCTAA
1 CATAAAAGCGTCGCAAAAAAAA-TCGTTTTAAACAAAACTACGCCGTTTTGCTATGCTATGCTAA
* *
26735425 AAGGGGGCTA-TTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATATAAACGCCGCTATTGC
65 AAGGGGGCTATTTTTTTAAAAGTAAAATTATTTTATGGCGTTTTTTATATAAACGCCACTATTGC
26735489 TTACCTTTAGCGGCGTTTTT
130 TTACCTTTAGCGGCGTTTTT
* * * * *
26735509 CGTAAAAGCGCCGTACAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTA
1 CATAAAAGCGTCG--CAAAAAAAATCGTTTTAAACAAAACTACGCCGTTTTGCTATGCTATGCTA
26735574 AAAGGGGGCTATTTTTTTAAAAGTAAAATTATTTTATGGCGTTTTTTATATAAACGCCACTATTG
64 AAAGGGGGCTATTTTTTTAAAAGTAAAATTATTTTATGGCGTTTTTTATATAAACGCCACTATTG
26735639 CTTACCTTTAGCGGCGTTTTT
129 CTTACCTTTAGCGGCGTTTTT
26735660 CATAAAAGCGTCGCAAAAAAAATCGTTTTAAACAAAACTACGCCGTTTTGCTATGCTATGCTAAA
1 CATAAAAGCGTCGCAAAAAAAATCGTTTTAAACAAAACTACGCCGTTTTGCTATGCTATGCTAAA
26735725 AGGGGGCTATTTTTTTAAAAGTAAAATTATTTTATGGCGTTTTTTATATAAACGCCACTATTGCT
66 AGGGGGCTATTTTTTTAAAAGTAAAATTATTTTATGGCGTTTTTTATATAAACGCCACTATTGCT
26735790 TACCTTTAGCGGCGTTTTT
131 TACCTTTAGCGGCGTTTTT
26735809 CATAAAAGCGTCGCAAAAAAAATCGTTTTAAACAAAACTACGCCGTTTTGCTATGCTATGCTAAA
1 CATAAAAGCGTCGCAAAAAAAATCGTTTTAAACAAAACTACGCCGTTTTGCTATGCTATGCTAAA
26735874 AGGGGGCTATTTTTTTAAAAGTAAAATTATTTTATGGCGTTTTTTATATAAACGCCACTATTGCT
66 AGGGGGCTATTTTTTTAAAAGTAAAATTATTTTATGGCGTTTTTTATATAAACGCCACTATTGCT
26735939 TACCTTTAGCGGCGTTTTT
131 TACCTTTAGCGGCGTTTTT
26735958 CATAAAAGCGTCGCAAAAAAAATCGTTTTAAACAAAACTACGCCGTTTTGCTATGCTATGCTAAA
1 CATAAAAGCGTCGCAAAAAAAATCGTTTTAAACAAAACTACGCCGTTTTGCTATGCTATGCTAAA
26736023 AGGGGGCTATTTTTTTAAAAGTAAAATTATTTTATGGCGTTTTTTATATAAACGCCACTATTGCT
66 AGGGGGCTATTTTTTTAAAAGTAAAATTATTTTATGGCGTTTTTTATATAAACGCCACTATTGCT
26736088 TACCTTTAGCGGCGTTTTT
131 TACCTTTAGCGGCGTTTTT
26736107 CATAAAAGCGTCGCAAAAAAAATCGTTTTAAACAAAACTACGCCGTTTTGCTATGCTATGCTAAA
1 CATAAAAGCGTCGCAAAAAAAATCGTTTTAAACAAAACTACGCCGTTTTGCTATGCTATGCTAAA
26736172 AGGGGGCTATTTTTTTAAAAGTAAAATTATTTTATGGCGTTTTTTATATAAACGCCACTATTGCT
66 AGGGGGCTATTTTTTTAAAAGTAAAATTATTTTATGGCGTTTTTTATATAAACGCCACTATTGCT
26736237 TACCTTTAGCGGCGTTTTT
131 TACCTTTAGCGGCGTTTTT
26736256 CATAAAAGCGTCGCAAAAAAAATCGTTTTAAACAAAACTACGCCGTTTTGCTAT
1 CATAAAAGCGTCGCAAAAAAAATCGTTTTAAACAAAACTACGCCGTTTTGCTAT
26736310 TCTAAAAAAA
Statistics
Matches: 928, Mismatches: 18, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
148 19 0.02
149 768 0.83
150 51 0.05
151 90 0.10
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (149 bp):
CATAAAAGCGTCGCAAAAAAAATCGTTTTAAACAAAACTACGCCGTTTTGCTATGCTATGCTAAA
AGGGGGCTATTTTTTTAAAAGTAAAATTATTTTATGGCGTTTTTTATATAAACGCCACTATTGCT
TACCTTTAGCGGCGTTTTT
Found at i:26736643 original size:17 final size:18
Alignment explanation
Indices: 26736610--26736643 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26736600 TATCTCTTAA
26736610 ATAATTTAAACTATATTC
1 ATAATTTAAACTATATTC
*
26736628 ATAATTTCAA-TATATT
1 ATAATTTAAACTATATT
26736644 TGATTTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (18 bp):
ATAATTTAAACTATATTC
Found at i:26736760 original size:15 final size:14
Alignment explanation
Indices: 26736745--26736815 Score: 65
Period size: 14 Copynumber: 4.9 Consensus size: 14
26736735 ACCCCTAAAT
*
26736745 CCCTAAACCTTAAAT
1 CCCTAAACCTT-AAC
26736760 CCCT-AACTCTTAAC
1 CCCTAAAC-CTTAAC
*
26736774 CCCT-AACATCTAAC
1 CCCTAAACCT-TAAC
*
26736788 CCCTAAACCCCTAAC
1 CCCTAAA-CCTTAAC
26736803 CCCTAAACCTTAA
1 CCCTAAACCTTAA
26736816 ATCCCAACAC
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
13 1 0.02
14 25 0.53
15 20 0.43
16 1 0.02
ACGTcount: A:0.35, C:0.42, G:0.00, T:0.23
Consensus pattern (14 bp):
CCCTAAACCTTAAC
Found at i:26736780 original size:7 final size:7
Alignment explanation
Indices: 26736760--26736808 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
26736750 AACCTTAAAT
26736760 CCCTAAC
1 CCCTAAC
* *
26736767 TCTTAAC
1 CCCTAAC
26736774 CCCTAAC
1 CCCTAAC
**
26736781 ATCTAAC
1 CCCTAAC
26736788 CCCTAAAC
1 CCCT-AAC
26736796 CCCTAAC
1 CCCTAAC
26736803 CCCTAA
1 CCCTAA
26736809 ACCTTAAATC
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
7 26 0.79
8 7 0.21
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (7 bp):
CCCTAAC
Found at i:26736816 original size:22 final size:22
Alignment explanation
Indices: 26736771--26736832 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 22
26736761 CCTAACTCTT
* *
26736771 AACCCCTAACATCTAACCCCTA
1 AACCCCTAACACCTAAACCCTA
* *
26736793 AACCCCTAACCCCTAAACCTTA
1 AACCCCTAACACCTAAACCCTA
* *
26736815 AATCCC-AACACTTAAACC
1 AACCCCTAACACCTAAACC
26736833 ATAATCCGTA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
21 10 0.30
22 23 0.70
ACGTcount: A:0.39, C:0.44, G:0.00, T:0.18
Consensus pattern (22 bp):
AACCCCTAACACCTAAACCCTA
Found at i:26736869 original size:15 final size:15
Alignment explanation
Indices: 26736846--26736875 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26736836 ATCCGTATTT
26736846 CATAATCCCTAAACC
1 CATAATCCCTAAACC
*
26736861 CATACTCCCTAAACC
1 CATAATCCCTAAACC
26736876 TTAAAATATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.43, G:0.00, T:0.20
Consensus pattern (15 bp):
CATAATCCCTAAACC
Found at i:26737094 original size:15 final size:15
Alignment explanation
Indices: 26737074--26737128 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
26737064 CCTAGCACGT
26737074 CTAACCCCTAAACCC
1 CTAACCCCTAAACCC
26737089 CTAACCCTCT-AACCC
1 CTAACCC-CTAAACCC
* * *
26737104 CTAAACCTTAAATCC
1 CTAACCCCTAAACCC
26737119 C-AACCCCTAA
1 CTAACCCCTAA
26737129 TCCATAATCC
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
14 8 0.24
15 23 0.70
16 2 0.06
ACGTcount: A:0.35, C:0.47, G:0.00, T:0.18
Consensus pattern (15 bp):
CTAACCCCTAAACCC
Found at i:26737110 original size:8 final size:7
Alignment explanation
Indices: 26737074--26737107 Score: 50
Period size: 8 Copynumber: 4.6 Consensus size: 7
26737064 CCTAGCACGT
26737074 CTAACCC
1 CTAACCC
26737081 CTAAACCC
1 CT-AACCC
26737089 CTAACCC
1 CTAACCC
26737096 TCTAACCC
1 -CTAACCC
26737104 CTAA
1 CTAA
26737108 ACCTTAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 11 0.44
8 14 0.56
ACGTcount: A:0.32, C:0.50, G:0.00, T:0.18
Consensus pattern (7 bp):
CTAACCC
Found at i:26737142 original size:14 final size:14
Alignment explanation
Indices: 26737123--26737171 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
26737113 AAATCCCAAC
26737123 CCCTAATCCATAAT
1 CCCTAATCCATAAT
26737137 CCCTAATCCATAAT
1 CCCTAATCCATAAT
* * *
26737151 CTCTAAACCCATACT
1 CCCT-AATCCATAAT
26737166 CCCTAA
1 CCCTAA
26737172 ACCGACCTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 19 0.63
15 11 0.37
ACGTcount: A:0.35, C:0.39, G:0.00, T:0.27
Consensus pattern (14 bp):
CCCTAATCCATAAT
Found at i:26737402 original size:73 final size:73
Alignment explanation
Indices: 26737325--26737477 Score: 216
Period size: 73 Copynumber: 2.1 Consensus size: 73
26737315 TTTTTTTGGT
* * * * * * * *
26737325 CGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTTGGCTTATGTTTTTTTGCGGCGCTTTCTT
1 CGCTAAATCCCCGAAAGCTCACAAAACGGCATCGTTGGGCTTAGGTTATTTTGAGGCACTTACTC
*
26737390 TAAAACGC
66 AAAAACGC
26737398 CGCTAAATCCCCGAAAGCTCACAAAACGGCATCGTTGGGCTTAGGTTATTTTGAGGCACTTACTC
1 CGCTAAATCCCCGAAAGCTCACAAAACGGCATCGTTGGGCTTAGGTTATTTTGAGGCACTTACTC
26737463 AAAAACGC
66 AAAAACGC
*
26737471 TGCTAAA
1 CGCTAAA
26737478 GCCGTATGCA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
73 70 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (73 bp):
CGCTAAATCCCCGAAAGCTCACAAAACGGCATCGTTGGGCTTAGGTTATTTTGAGGCACTTACTC
AAAAACGC
Found at i:26737777 original size:113 final size:114
Alignment explanation
Indices: 26737377--26737817 Score: 593
Period size: 114 Copynumber: 3.9 Consensus size: 114
26737367 ATGTTTTTTT
* * *
26737377 GCGGCGCTTTCTTTAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCATCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGACATCGTTGGGCTTAG
* * * *
26737442 GTTATTTTGAGGCACTTACTCAAAAACGCTGCTAAAG-CCGTATGCATTA
66 GTTATTTTGCGGCGCTTACTCAAAAACGCCGCTAAAGACC-TAAGCATTA
* * * * * *
26737491 GCGGCGCCTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTTGTTTGGCTTAT
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGACATCGTTGGGCTTAG
* * * *
26737556 GTTTTTTTGCGGCGCTTTC-CTAAAAACGCCGCTAAAAACTTAAGCATTA
66 GTTATTTTGCGGCGCTTACTC-AAAAACGCCGCTAAAGACCTAAGCATTA
* * *
26737605 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCTCAAAAGCTCACAAAACGACGTCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGACATCGTTGGGCTTAG
26737670 GTTATTTTGCGGCGCTTACTCAAAAACGCCGCTAAAGACCTAAGCATTA
66 GTTATTTTGCGGCGCTTACTCAAAAACGCCGCTAAAGACCTAAGCATTA
* ** **
26737719 GC-GCGCTTTCTTAAAAACGTCGCTAAATCCCTGAAAGCTCACAAAACGACATTATTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGACATCGTTGGGCTTAG
**
26737783 GTT-TTTTGCGGCGCTTTTTCAAAAACGCCGCTAAA
66 GTTATTTTGCGGCGCTTACTCAAAAACGCCGCTAAA
26737818 TCCCCAAAAG
Statistics
Matches: 288, Mismatches: 36, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
112 30 0.10
113 58 0.20
114 198 0.69
115 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (114 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGACATCGTTGGGCTTAG
GTTATTTTGCGGCGCTTACTCAAAAACGCCGCTAAAGACCTAAGCATTA
Found at i:26737809 original size:72 final size:71
Alignment explanation
Indices: 26737721--26737888 Score: 228
Period size: 72 Copynumber: 2.3 Consensus size: 71
26737711 AAGCATTAGC
* ** *
26737721 GCGCTTTCTTAAAAACGTCGCTAAATCCCTGAAAGCTCACAAAACGACATTATTGGGCTTAGGTT
1 GCGCTTT-TTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGACATCATTGGGCTTAGGTT
26737786 TTTTGCG
65 TTTTGCG
* * * *
26737793 GCGCTTTTTCAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTT
1 GCGCTTTTT-AAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGACATCATTGGGCTTAGGTT
26737858 TTTTGCG
65 TTTTGCG
*
26737865 GCGCTTTTTGGAAAACGCCGCTAA
1 GCGCTTTTT-AAAAACGCCGCTAA
26737889 TGCTTATTTT
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
71 2 0.02
72 83 0.98
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (71 bp):
GCGCTTTTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGACATCATTGGGCTTAGGTTT
TTTGCG
Found at i:26739998 original size:20 final size:20
Alignment explanation
Indices: 26739938--26740007 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 20
26739928 TACGGGATTA
*
26739938 CACTTTGGTGCCTCTACTTG
1 CACTTTGGTGCCTCTGCTTG
* * * *
26739958 TACTTCGGTGCCGCTGTTTG
1 CACTTTGGTGCCTCTGCTTG
*
26739978 CACTTTGGTGCCTTTGCTTG
1 CACTTTGGTGCCTCTGCTTG
26739998 CACTTTGGTG
1 CACTTTGGTG
26740008 TGTTTGGGAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.07, C:0.26, G:0.26, T:0.41
Consensus pattern (20 bp):
CACTTTGGTGCCTCTGCTTG
Found at i:26740804 original size:30 final size:30
Alignment explanation
Indices: 26740770--26740833 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
26740760 CACGGGCTGT
* * *
26740770 CACACGATTGTGTGCAACACATGGTCACAC
1 CACACGACTGTGTCCAACACACGGTCACAC
*
26740800 CACACGGCTGTGTCCAACACACGGTCACAC
1 CACACGACTGTGTCCAACACACGGTCACAC
26740830 CACA
1 CACA
26740834 TGGCCATGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.36, G:0.19, T:0.16
Consensus pattern (30 bp):
CACACGACTGTGTCCAACACACGGTCACAC
Found at i:26741955 original size:27 final size:27
Alignment explanation
Indices: 26741918--26742044 Score: 179
Period size: 27 Copynumber: 4.7 Consensus size: 27
26741908 ATAACATTAA
26741918 GCAT-ATAGTCATTTTATAACATAGGG
1 GCATAATAGTCATTTTATAACATAGGG
* *
26741944 GCATAATAGTCATTTTACAATATAGGG
1 GCATAATAGTCATTTTATAACATAGGG
26741971 GCATAACT-GTCATTTTATAACATAGGG
1 GCATAA-TAGTCATTTTATAACATAGGG
**
26741998 GCATAATAGTCATTTTACCACAT-GAGG
1 GCATAATAGTCATTTTATAACATAG-GG
26742025 GCATAATAGTCATTTTATAA
1 GCATAATAGTCATTTTATAA
26742045 TAGTTTGGGG
Statistics
Matches: 89, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
26 6 0.07
27 82 0.92
28 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.34
Consensus pattern (27 bp):
GCATAATAGTCATTTTATAACATAGGG
Found at i:26741984 original size:54 final size:54
Alignment explanation
Indices: 26741918--26742044 Score: 197
Period size: 54 Copynumber: 2.4 Consensus size: 54
26741908 ATAACATTAA
*
26741918 GCAT-ATAGTCATTTTATAACATAGGGGCATAATAGTCATTTTACAATAT-AGGG
1 GCATAATAGTCATTTTATAACATAGGGGCATAATAGTCATTTTACAACATGA-GG
*
26741971 GCATAACT-GTCATTTTATAACATAGGGGCATAATAGTCATTTTACCACATGAGG
1 GCATAA-TAGTCATTTTATAACATAGGGGCATAATAGTCATTTTACAACATGAGG
26742025 GCATAATAGTCATTTTATAA
1 GCATAATAGTCATTTTATAA
26742045 TAGTTTGGGG
Statistics
Matches: 68, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
53 5 0.07
54 61 0.90
55 2 0.03
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.34
Consensus pattern (54 bp):
GCATAATAGTCATTTTATAACATAGGGGCATAATAGTCATTTTACAACATGAGG
Found at i:26751212 original size:50 final size:50
Alignment explanation
Indices: 26751147--26751432 Score: 223
Period size: 50 Copynumber: 5.6 Consensus size: 50
26751137 TCTTGTACTA
* **
26751147 CCAATGCCATATCCCAGATATGGTCTTACAAGAGAGTTCTCATATAGGTG
1 CCAATGCCATATCCCAGACATGGTCTTACAAGAGACCTCTCATATAGGTG
* ** * * *
26751197 TCC-ATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTG
1 -CCAATGCCATATCCCAGACATGGTCTTACAAGAGACCTCTCATATAGGTG
* * * * *
26751247 CCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATG
1 CCAATGCCATATCCCAGACATGGTCTTACAAGAGACCTCTCATATAGGTG
*** * * * * * * *
26751297 CCAACAACATGTCCGAGACATGGTCTTACATGGGACCTCTCATCTCGCTG
1 CCAATGCCATATCCCAGACATGGTCTTACAAGAGACCTCTCATATAGGTG
* * * * * *
26751347 CCAACGCCATGTCCCAAACATGGTCTTACATGAGACCTCTCCTAATCTCAATGATG
1 CCAATGCCATATCCCAGACATGGTCTTACAAGAGACCTCT-C--ATAT--A-GGTG
*
26751403 CCAATGCCATGTCCCAGACATGGTCTTACA
1 CCAATGCCATATCCCAGACATGGTCTTACA
26751433 TGGGATCTCT
Statistics
Matches: 199, Mismatches: 29, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
49 2 0.01
50 159 0.80
51 3 0.02
53 4 0.02
56 31 0.16
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (50 bp):
CCAATGCCATATCCCAGACATGGTCTTACAAGAGACCTCTCATATAGGTG
Found at i:26751257 original size:100 final size:99
Alignment explanation
Indices: 26751147--26751442 Score: 299
Period size: 100 Copynumber: 2.9 Consensus size: 99
26751137 TCTTGTACTA
* * ** * *
26751147 CCAATGCCATATCCCAGATATGGTCTTACAAGAGAGTTCTCATATAGGTGTCCATGC-CATGTCC
1 CCAATGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATATAGATG-CCA-ACACATGTCC
* * *
26751211 CAGACATGGTCTTACGGGGGACCTCTCATCTTGGTG
64 CAGACATGGTCTTACAGGGGACCTCTCATCTCGCTG
* * * *
26751247 CCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACAACATGTCCG
1 CCAATGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATATAGATGCCAAC-ACATGTCCC
*
26751312 AGACATGGTCTTACATGGGACCTCTCATCTCGCTG
65 AGACATGGTCTTACAGGGGACCTCTCATCTCGCTG
* * * *
26751347 CCAACGCCATGTCCCAAACATGGTCTTACATGAGACCTCTCCTAATCTCAATGATGCCAATGC-C
1 CCAATGCCATATCCCAGACATGGTCTTACATGAGACCTCT-C--ATAT--A-GATGCCAA--CAC
* *
26751411 ATGTCCCAGACATGGTCTTACATGGGATCTCT
58 ATGTCCCAGACATGGTCTTACAGGGGACCTCT
26751443 TTACCCAAAT
Statistics
Matches: 165, Mismatches: 21, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
98 1 0.01
99 3 0.02
100 116 0.70
101 1 0.01
103 4 0.02
106 39 0.24
108 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (99 bp):
CCAATGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATATAGATGCCAACACATGTCCCA
GACATGGTCTTACAGGGGACCTCTCATCTCGCTG
Found at i:26758088 original size:50 final size:49
Alignment explanation
Indices: 26757971--26758211 Score: 239
Period size: 50 Copynumber: 4.9 Consensus size: 49
26757961 GGATATACCA
* * * ** * * * *
26757971 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCTTGTAC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAG
* * * * * **
26758020 TACCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-AG
* * ** * *
26758070 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-AG
*
26758120 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAG
*
26758169 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26758212 TTACCCAAAT
Statistics
Matches: 158, Mismatches: 32, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
49 36 0.23
50 122 0.77
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (49 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAG
Found at i:26761603 original size:25 final size:25
Alignment explanation
Indices: 26761557--26761605 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
26761547 TTGTTTTTGA
* *
26761557 TAGTATATCCTGAAACTGCTATAGG
1 TAGTATATACTGAAACTACTATAGG
* *
26761582 TAGTATATATTGAGACTACTATAG
1 TAGTATATACTGAAACTACTATAG
26761606 ATACATTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (25 bp):
TAGTATATACTGAAACTACTATAGG
Found at i:26769489 original size:43 final size:44
Alignment explanation
Indices: 26769402--26769498 Score: 178
Period size: 43 Copynumber: 2.2 Consensus size: 44
26769392 TCAATAATTG
26769402 TATATACCACAAGTTCAACGAGAGTAAGGTTCTATATTTGGTTT
1 TATATACCACAAGTTCAACGAGAGTAAGGTTCTATATTTGGTTT
*
26769446 TATATACCACAAGTTCAATGAGAGT-AGGTTCTATATTTGGTTT
1 TATATACCACAAGTTCAACGAGAGTAAGGTTCTATATTTGGTTT
26769489 TATATACCAC
1 TATATACCAC
26769499 TACTTATCAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 28 0.54
44 24 0.46
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.37
Consensus pattern (44 bp):
TATATACCACAAGTTCAACGAGAGTAAGGTTCTATATTTGGTTT
Found at i:26775342 original size:25 final size:25
Alignment explanation
Indices: 26775308--26775377 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
26775298 TATATTCCAT
26775308 AGCTCGTGAGAGCATACCGATTTAC
1 AGCTCGTGAGAGCATACCGATTTAC
* *
26775333 AGCTCATGAGAGCATATCGATTTAC
1 AGCTCGTGAGAGCATACCGATTTAC
*
26775358 AGCTCGTGAGAGTATACCGA
1 AGCTCGTGAGAGCATACCGA
26775378 ATTATAACTC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24
Consensus pattern (25 bp):
AGCTCGTGAGAGCATACCGATTTAC
Found at i:26786526 original size:25 final size:25
Alignment explanation
Indices: 26786498--26786571 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 25
26786488 ACACAAGTTG
*
26786498 TAAATCGATATGTTCTCACGAGCTA
1 TAAATCGGTATGTTCTCACGAGCTA
* * *
26786523 TAAATTGGTATGCTT-TCACGAGTTG
1 TAAATCGGTATG-TTCTCACGAGCTA
* * *
26786548 TATATCGGTATGCTCTCATGAGCT
1 TAAATCGGTATGTTCTCACGAGCT
26786572 GTGGTTCAGA
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
24 1 0.03
25 35 0.92
26 2 0.05
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (25 bp):
TAAATCGGTATGTTCTCACGAGCTA
Found at i:26792184 original size:21 final size:21
Alignment explanation
Indices: 26792145--26792230 Score: 86
Period size: 21 Copynumber: 4.0 Consensus size: 21
26792135 CCTGATCAGT
26792145 ATACGACACATAAGTGCCTGA
1 ATACGACACATAAGTGCCTGA
*
26792166 A-ACGACACATGAGGTGCCT-A
1 ATACGACACAT-AAGTGCCTGA
*
26792186 ATAGGACACATAAAGTGCCTGA
1 ATACGACACAT-AAGTGCCTGA
* *
26792208 TGTACGAAACATAAAGTGCCTGA
1 -ATACGACACAT-AAGTGCCTGA
26792231 TCGGCAAAGC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
20 11 0.20
21 23 0.43
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (21 bp):
ATACGACACATAAGTGCCTGA
Found at i:26792472 original size:36 final size:37
Alignment explanation
Indices: 26792432--26792520 Score: 101
Period size: 36 Copynumber: 2.4 Consensus size: 37
26792422 CTCTTCAAAT
* *
26792432 TCACATTTCAATTCAACTTCACTTTTTCACTTTCAA-
1 TCACATTTCAATTCAAATTCACTTTTCCACTTTCAAG
* * *
26792468 TCACAATTCAATTCAAATTTACTTTTCCATTTTCAAG
1 TCACATTTCAATTCAAATTCACTTTTCCACTTTCAAG
*
26792505 TCA-ATATTCATTTCAA
1 TCACAT-TTCAATTCAA
26792521 TTCCACACAT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
36 32 0.73
37 12 0.27
ACGTcount: A:0.31, C:0.24, G:0.01, T:0.44
Consensus pattern (37 bp):
TCACATTTCAATTCAAATTCACTTTTCCACTTTCAAG
Found at i:26799824 original size:23 final size:23
Alignment explanation
Indices: 26799754--26799862 Score: 147
Period size: 23 Copynumber: 5.0 Consensus size: 23
26799744 CCTGATCAGT
26799754 ATACGACACAT-AAGTGCCTGA-
1 ATACGACACATAAAGTGCCTGAG
** *
26799775 A-ACGACACACGAGGTGCCT--G
1 ATACGACACATAAAGTGCCTGAG
*
26799795 ATACGACACATAAAGTGTCTGAG
1 ATACGACACATAAAGTGCCTGAG
26799818 ATACGACACATAAAGTGCCTGAG
1 ATACGACACATAAAGTGCCTGAG
26799841 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
26799863 TCGGCAAAGC
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
20 9 0.12
21 22 0.29
23 45 0.59
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAG
Found at i:26800115 original size:16 final size:17
Alignment explanation
Indices: 26800079--26800115 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
26800069 TTATATAATT
26800079 TATAATATTTTAATTAA
1 TATAATATTTTAATTAA
*
26800096 -ATAATATTTTTA-TAA
1 TATAATATTTTAATTAA
26800111 TATAA
1 TATAA
26800116 ATCAAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATAATATTTTAATTAA
Found at i:26800306 original size:16 final size:16
Alignment explanation
Indices: 26800285--26800346 Score: 80
Period size: 16 Copynumber: 4.2 Consensus size: 16
26800275 ATTTACTTAA
26800285 CTACATGTTCAATTTT
1 CTACATGTTCAATTTT
26800301 CTACATGTTCAATTTT
1 CTACATGTTCAATTTT
*
26800317 CTA-A-G---AATTAT
1 CTACATGTTCAATTTT
26800328 CTACATGTTCAATTTT
1 CTACATGTTCAATTTT
26800344 CTA
1 CTA
26800347 AGATGGAGGC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
11 8 0.21
12 1 0.03
13 1 0.03
14 1 0.03
15 1 0.03
16 27 0.69
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (16 bp):
CTACATGTTCAATTTT
Found at i:26800333 original size:27 final size:27
Alignment explanation
Indices: 26800295--26800349 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
26800285 CTACATGTTC
*
26800295 AATTTTCTACATGTTCAATTTTCTAAG
1 AATTATCTACATGTTCAATTTTCTAAG
26800322 AATTATCTACATGTTCAATTTTCTAAG
1 AATTATCTACATGTTCAATTTTCTAAG
26800349 A
1 A
26800350 TGGAGGCCCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.45
Consensus pattern (27 bp):
AATTATCTACATGTTCAATTTTCTAAG
Found at i:26801378 original size:18 final size:19
Alignment explanation
Indices: 26801355--26801392 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
26801345 CGTGCGTGAC
26801355 TTTCTTT-TCTTC-TTTCTT
1 TTTCTTTCT-TTCTTTTCTT
26801373 TTTCTTTCTTTCTTTTCTT
1 TTTCTTTCTTTCTTTTCTT
26801392 T
1 T
26801393 CTAATTTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTCTTTCTTTCTTTTCTT
Found at i:26801389 original size:13 final size:13
Alignment explanation
Indices: 26801354--26801394 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
26801344 TCGTGCGTGA
26801354 CTTTCTTTTC-TT
1 CTTTCTTTTCTTT
26801366 CTTTCTTTTTCTTT
1 CTTTC-TTTTCTTT
26801380 CTTTCTTTTCTTT
1 CTTTCTTTTCTTT
26801393 CT
1 CT
26801395 AATTTGTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 5 0.19
13 15 0.56
14 7 0.26
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
CTTTCTTTTCTTT
Found at i:26806544 original size:83 final size:83
Alignment explanation
Indices: 26806405--26806574 Score: 290
Period size: 83 Copynumber: 2.0 Consensus size: 83
26806395 AGAAGTTTTT
*
26806405 TAAAATAGTTACGTATTTGAGTAAATTTTATTAAAACTTTTGGTTCTTTTTAAAAACTCGATTAT
1 TAAAACAGTTACGTATTTGAGTAAATTTTATTAAAACTTTTGGTTCTTTTTAAAAACTCGATTAT
*
26806470 CTCTACTACTAGTC-ATTA
66 CCCTACTACTAG-CAATTA
26806488 TAAAACAGTTACGTATTTGAGTAAATTTTATTAAAA-TGTTTGGTTCTTTTTAAAAACTCGATTA
1 TAAAACAGTTACGTATTTGAGTAAATTTTATTAAAACT-TTTGGTTCTTTTTAAAAACTCGATTA
26806552 TCCCTACTACTAGCAATTA
65 TCCCTACTACTAGCAATTA
26806571 TAAA
1 TAAA
26806575 TCAAAACAAT
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
82 2 0.02
83 81 0.98
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (83 bp):
TAAAACAGTTACGTATTTGAGTAAATTTTATTAAAACTTTTGGTTCTTTTTAAAAACTCGATTAT
CCCTACTACTAGCAATTA
Found at i:26809268 original size:100 final size:100
Alignment explanation
Indices: 26809095--26809365 Score: 411
Period size: 100 Copynumber: 2.7 Consensus size: 100
26809085 AACTTTTGGA
** * * *
26809095 AAGTAAGATTCGCCATTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCTG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACTG
*
26809160 TTGTGGCTTTAATCTGTTCCACTACA-TCGCCTAG-G
66 ATGTGGCTTTAATCTGTTCCACTACACT-GCC-AGAG
*
26809195 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACTG
*
26809260 ATGTGGCTTTAATCTGTTCCACTGCACTGCCAGAG
66 ATGTGGCTTTAATCTGTTCCACTACACTGCCAGAG
* **
26809295 AAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTAAGGGAAGCAAGATTCACTG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACTG
26809360 ATGTGG
66 ATGTGG
26809366 GTATTACACC
Statistics
Matches: 157, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
99 2 0.01
100 154 0.98
101 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (100 bp):
AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACTG
ATGTGGCTTTAATCTGTTCCACTACACTGCCAGAG
Found at i:26809334 original size:50 final size:50
Alignment explanation
Indices: 26809095--26809365 Score: 249
Period size: 50 Copynumber: 5.4 Consensus size: 50
26809085 AACTTTTGGA
** * *
26809095 AAGTAAGATTCGCCATTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGG
1 AAGTAAGATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGCCAGGG
* * * ** *
26809145 AAGCATGATTCGCTGTTGTGGCTTTAATCTGTTCCACTAC-ATCGCCTA-GG
1 AAGTAAGATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAAT-GCC-AGGG
* * *
26809195 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGG
1 AAGTAAGATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGCCAGGG
* * * * * ** * *
26809245 AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACTGCCAGAG
1 AAGTAAGATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGCCAGGG
* * **
26809295 AAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTAAGGG
1 AAGTAAGATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGCCAGGG
* * *
26809345 AAGCAAGATTCACTGATGTGG
1 AAGTAAGATTCGCTGTTGTGG
26809366 GTATTACACC
Statistics
Matches: 168, Mismatches: 49, Indels: 8
0.75 0.22 0.04
Matches are distributed among these distances:
49 2 0.01
50 164 0.98
51 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (50 bp):
AAGTAAGATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGCCAGGG
Found at i:26813922 original size:20 final size:20
Alignment explanation
Indices: 26813897--26813939 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
26813887 ATACAATAAA
26813897 ATTTCAATTTCATATTGAAT
1 ATTTCAATTTCATATTGAAT
26813917 ATTTCAATTTCATATTGAAT
1 ATTTCAATTTCATATTGAAT
26813937 ATT
1 ATT
26813940 GAATATTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.51
Consensus pattern (20 bp):
ATTTCAATTTCATATTGAAT
Found at i:26815930 original size:30 final size:31
Alignment explanation
Indices: 26815896--26815963 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
26815886 TTACAAAAAT
** *
26815896 GTCATTGAACTAT-TTGAAAGTTTCATTTAA
1 GTCATTGAACTATATAAAAAATTTCATTTAA
* *
26815926 GTCATTTAACTATATAAAAAATTTTATTTAA
1 GTCATTGAACTATATAAAAAATTTCATTTAA
26815957 GTCATTG
1 GTCATTG
26815964 GGTTGTTAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
30 12 0.39
31 19 0.61
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (31 bp):
GTCATTGAACTATATAAAAAATTTCATTTAA
Found at i:26817225 original size:17 final size:16
Alignment explanation
Indices: 26817184--26817225 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
26817174 TAATCATTTA
26817184 AAAATTA-TAAAAAAT
1 AAAATTATTAAAAAAT
*
26817199 ATAAACTATTAAAATAAT
1 A-AAATTATTAAAA-AAT
26817217 AAAATTATT
1 AAAATTATT
26817226 TTTTACTATC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 1 0.05
16 5 0.23
17 12 0.55
18 4 0.18
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAATTATTAAAAAAT
Found at i:26817838 original size:11 final size:10
Alignment explanation
Indices: 26817796--26817856 Score: 77
Period size: 11 Copynumber: 5.6 Consensus size: 10
26817786 CAACTAAATC
26817796 ATTTCTCTCA
1 ATTTCTCTCA
26817806 ATTTCTCTCTA
1 ATTTCTCTC-A
26817817 ATATTCTCTCA
1 AT-TTCTCTCA
26817828 ATTTCCTCTCA
1 ATTT-CTCTCA
26817839 ATTTCCTCTCAA
1 ATTT-CTCTC-A
26817851 ATTTCT
1 ATTTCT
26817857 ATTTAAAAGA
Statistics
Matches: 47, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
10 11 0.23
11 24 0.51
12 12 0.26
ACGTcount: A:0.21, C:0.30, G:0.00, T:0.49
Consensus pattern (10 bp):
ATTTCTCTCA
Found at i:26822707 original size:126 final size:126
Alignment explanation
Indices: 26822482--26822772 Score: 483
Period size: 126 Copynumber: 2.3 Consensus size: 126
26822472 AGGCCAATGC
*
26822482 GCTACTGTAGCAAAAGCGCGTCCATGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAACATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAACATCCT
* *
26822547 ACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
66 ACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTGCAGGA
* * * *
26822608 GCTACTGAAGCAAAAACGCGTCCACATGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAACATCCT
*
26822673 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTGCAGGA
66 ACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTGCAGGA
* * *
26822734 GCTATTGTAGCAAAAGTGGGTCCACGTGGGAGCTTCTTT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTT
26822773 AAATCAACAA
Statistics
Matches: 151, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 151 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (126 bp):
GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAACATCCT
ACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTGCAGGA
Found at i:26822966 original size:95 final size:95
Alignment explanation
Indices: 26822847--26823090 Score: 278
Period size: 95 Copynumber: 2.5 Consensus size: 95
26822837 TTAAAAACCT
*
26822847 AAACCCTAAACCTTAAACCCTAATCTAATTTTATAAAAATTTATAATTAATTTACTCAAGTAACC
1 AAACCCTAAACATTAAA-CCTAATCTAATTTT-TAAAAATTTATAATTAATTTACTCAAGTAACC
* * *
26822912 CTGAACCCTAATTTATTTGA-TTTTCCTT-AA
64 CTAAACCCTAATTTAATTAATTTTTCCTTAAA
* * * * *
26822942 AAACCCTTAACTTTAAACCTTAATCTGATTTTTTTAAAAAATT-TAATTAAATTACTCAAGTAAC
1 AAACCCTAAACATTAAACC-TAATCT-A-ATTTTTAAAAATTTATAATTAATTTACTCAAGTAAC
*
26823006 CCTAAACCCTAATTTAATTAATTTTTTCTTAAA
63 CCTAAACCCTAATTTAATTAATTTTTCCTTAAA
** ** * *
26823039 AAACAATAAACACGAAACCTAATCCAATTTTGAAAAATTTATAATTAATTTA
1 AAACCCTAAACATTAAACCTAATCTAATTTTTAAAAATTTATAATTAATTTA
26823091 ATTGACAAAC
Statistics
Matches: 123, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
94 13 0.11
95 70 0.57
96 21 0.17
97 19 0.15
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (95 bp):
AAACCCTAAACATTAAACCTAATCTAATTTTTAAAAATTTATAATTAATTTACTCAAGTAACCCT
AAACCCTAATTTAATTAATTTTTCCTTAAA
Found at i:26824223 original size:10 final size:9
Alignment explanation
Indices: 26824189--26824255 Score: 53
Period size: 9 Copynumber: 6.9 Consensus size: 9
26824179 ACAAGTTAAA
26824189 TATAAAAAT
1 TATAAAAAT
**
26824198 TATTAGAACTT
1 TA-TA-AAAAT
26824209 TATAAATAAT
1 TATAAA-AAT
26824219 TATAAAAAT
1 TATAAAAAT
26824228 TATAGAAAATT
1 TATA-AAAA-T
* *
26824239 TTTAAATAT
1 TATAAAAAT
26824248 TATAAAAA
1 TATAAAAA
26824256 AATTTAGAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
9 18 0.40
10 18 0.40
11 9 0.20
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (9 bp):
TATAAAAAT
Found at i:26824249 original size:29 final size:30
Alignment explanation
Indices: 26824189--26824255 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
26824179 ACAAGTTAAA
*
26824189 TATAAAAATTATTAGAACTTTATAAATAAT
1 TATAAAAATTATTAGAAATTTATAAATAAT
*
26824219 TATAAAAATTA-TAGAAAATTTTTAAAT-AT
1 TATAAAAATTATTAG-AAATTTATAAATAAT
26824248 TATAAAAA
1 TATAAAAA
26824256 AATTTAGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 13 0.38
30 21 0.62
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (30 bp):
TATAAAAATTATTAGAAATTTATAAATAAT
Found at i:26824256 original size:30 final size:31
Alignment explanation
Indices: 26824192--26824271 Score: 87
Period size: 30 Copynumber: 2.6 Consensus size: 31
26824182 AGTTAAATAT
*
26824192 AAAAATTATTAG-AACTTTATAAATAATTAT-
1 AAAAATTA-TAGAAAATTTATAAATAATTATA
*
26824222 AAAAATTATAGAAAATTTTTAAAT-ATTATAA
1 AAAAATTATAGAAAATTTATAAATAATTAT-A
*
26824253 AAAAATT-TAGAAAAATTAT
1 AAAAATTATAGAAAATTTAT
26824272 TGAAACATCA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
29 8 0.19
30 28 0.65
31 7 0.16
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.38
Consensus pattern (31 bp):
AAAAATTATAGAAAATTTATAAATAATTATA
Found at i:26825022 original size:21 final size:21
Alignment explanation
Indices: 26824980--26825022 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
26824970 ATTTGAATAA
* *
26824980 TTTTAACAAAATTTATATATT
1 TTTTAAAAAAATTTATAGATT
26825001 TTTTAAAAAAA-TTATAAGATT
1 TTTTAAAAAAATTTAT-AGATT
26825022 T
1 T
26825023 AAATTTTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
TTTTAAAAAAATTTATAGATT
Found at i:26825078 original size:20 final size:21
Alignment explanation
Indices: 26825048--26825093 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
26825038 TTAAAAAAAA
26825048 TTATAA-A-TTTTTATAAATT
1 TTATAATATTTTTTATAAATT
*
26825067 TT-TAATATTTTTTATGAATT
1 TTATAATATTTTTTATAAATT
26825087 TTATAAT
1 TTATAAT
26825094 TTATATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 3 0.13
19 3 0.13
20 13 0.57
21 4 0.17
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (21 bp):
TTATAATATTTTTTATAAATT
Found at i:26825445 original size:21 final size:18
Alignment explanation
Indices: 26825419--26825463 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 18
26825409 CTTATTTGGT
*
26825419 ATTTTAACTTTGTTTTAATAA
1 ATTTTAA-TTTATTTT-A-AA
26825440 ATTTTAATTTATTTTAAA
1 ATTTTAATTTATTTTAAA
26825458 ATTTTA
1 ATTTTA
26825464 TTAAAACAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 8 0.35
19 1 0.04
20 7 0.30
21 7 0.30
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (18 bp):
ATTTTAATTTATTTTAAA
Found at i:26826480 original size:16 final size:16
Alignment explanation
Indices: 26826436--26826482 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
26826426 TACTATAAAA
*
26826436 TATAATTTAACATA-AT
1 TATAA-TTAAAATATAT
*
26826452 TATTATT-AAATATAT
1 TATAATTAAAATATAT
26826467 TATAATTAAAATATAT
1 TATAATTAAAATATAT
26826483 AATTTAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 4 0.15
15 10 0.38
16 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TATAATTAAAATATAT
Found at i:26827651 original size:76 final size:76
Alignment explanation
Indices: 26827525--26827753 Score: 458
Period size: 76 Copynumber: 3.0 Consensus size: 76
26827515 NNNNNNNNNN
26827525 TATGGTAATGTACCTTCTCTTTCTTCTTCTTCTTTCTCCTCCTACCATTAGAGTAATAGATGTTA
1 TATGGTAATGTACCTTCTCTTTCTTCTTCTTCTTTCTCCTCCTACCATTAGAGTAATAGATGTTA
26827590 TAATTTGCCTT
66 TAATTTGCCTT
26827601 TATGGTAATGTACCTTCTCTTTCTTCTTCTTCTTTCTCCTCCTACCATTAGAGTAATAGATGTTA
1 TATGGTAATGTACCTTCTCTTTCTTCTTCTTCTTTCTCCTCCTACCATTAGAGTAATAGATGTTA
26827666 TAATTTGCCTT
66 TAATTTGCCTT
26827677 TATGGTAATGTACCTTCTCTTTCTTCTTCTTCTTTCTCCTCCTACCATTAGAGTAATAGATGTTA
1 TATGGTAATGTACCTTCTCTTTCTTCTTCTTCTTTCTCCTCCTACCATTAGAGTAATAGATGTTA
26827742 TAATTTGCCTT
66 TAATTTGCCTT
26827753 T
1 T
26827754 CTTCACTATT
Statistics
Matches: 153, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 153 1.00
ACGTcount: A:0.20, C:0.22, G:0.10, T:0.48
Consensus pattern (76 bp):
TATGGTAATGTACCTTCTCTTTCTTCTTCTTCTTTCTCCTCCTACCATTAGAGTAATAGATGTTA
TAATTTGCCTT
Found at i:26834180 original size:62 final size:62
Alignment explanation
Indices: 26834072--26834190 Score: 150
Period size: 62 Copynumber: 1.9 Consensus size: 62
26834062 ATGGGCAACA
** * *
26834072 GACACGAGCGTGTGCCTGAACCGTGTAACTCACTATTTGTGGTATAATACCACACGGCCAGG
1 GACACGAGCGTGTGCCTGAACCGTGTAACTCACTATTTACGATATAAAACCACACGGCCAGG
* * * *
26834134 GACACGGGCGTGTGCCTTG-GCTGTGTAACTCACTGTTTACGATATAAAACCACACGG
1 GACACGAGCGTGTGCC-TGAACCGTGTAACTCACTATTTACGATATAAAACCACACGG
26834191 TCAAAGACAT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
62 46 0.96
63 2 0.04
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (62 bp):
GACACGAGCGTGTGCCTGAACCGTGTAACTCACTATTTACGATATAAAACCACACGGCCAGG
Found at i:26834208 original size:62 final size:62
Alignment explanation
Indices: 26834092--26834234 Score: 144
Period size: 62 Copynumber: 2.3 Consensus size: 62
26834082 TGTGCCTGAA
* ** * * ** * * *
26834092 CCGTGTAACTCACTATTTGTGGTATAATACCACACGGCCAGGGACACGGGCGTGT-GCCTTGG
1 CCGTGTAACTCACTGTTTACGATATAAAACCACACGGCCAAAGACACGGACGTGTAACC-AGG
* * *
26834154 CTGTGTAACTCACTGTTTACGATATAAAACCACACGGTCAAAGACATGGACGTGTAACCAGG
1 CCGTGTAACTCACTGTTTACGATATAAAACCACACGGCCAAAGACACGGACGTGTAACCAGG
*
26834216 CCATGTAACTCACTGTTTA
1 CCGTGTAACTCACTGTTTA
26834235 TGCTTTGAAA
Statistics
Matches: 65, Mismatches: 15, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
62 63 0.97
63 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (62 bp):
CCGTGTAACTCACTGTTTACGATATAAAACCACACGGCCAAAGACACGGACGTGTAACCAGG
Found at i:26834251 original size:62 final size:63
Alignment explanation
Indices: 26834157--26834280 Score: 151
Period size: 62 Copynumber: 2.0 Consensus size: 63
26834147 GCCTTGGCTG
*
26834157 TGTAACTCACTGTTTACGATATAAAACCACACGGTCAAAG-ACATGGACGTGTAACCAGGCCA
1 TGTAACTCACTGTTTACGATATAAAACCACACGGGCAAAGCACATGGACGTGTAACCAGGCCA
* * * * * * ** *
26834219 TGTAACTCACTGTTTATGCTTTGAAACTACACGGGCAAGGCACATGGGTGTGTGACCAGGCC
1 TGTAACTCACTGTTTACGATATAAAACCACACGGGCAAAGCACATGGACGTGTAACCAGGCC
26834281 GTGTGTCATG
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
62 33 0.65
63 18 0.35
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (63 bp):
TGTAACTCACTGTTTACGATATAAAACCACACGGGCAAAGCACATGGACGTGTAACCAGGCCA
Found at i:26835349 original size:38 final size:38
Alignment explanation
Indices: 26835298--26835373 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
26835288 TCATAATGTA
26835298 TGAGAAAAGTAGTTTAATAATAATTTAGTATTTGAATT
1 TGAGAAAAGTAGTTTAATAATAATTTAGTATTTGAATT
26835336 TGAGAAAAGTAGTTTAATAATAATTTAGTATTTGAATT
1 TGAGAAAAGTAGTTTAATAATAATTTAGTATTTGAATT
26835374 AATATAGAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (38 bp):
TGAGAAAAGTAGTTTAATAATAATTTAGTATTTGAATT
Found at i:26838094 original size:16 final size:17
Alignment explanation
Indices: 26838067--26838101 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
26838057 AGAGAGTTGA
26838067 GAGAGAGGATGAGAGAT
1 GAGAGAGGATGAGAGAT
*
26838084 GAGAG-GGATGAGGGAT
1 GAGAGAGGATGAGAGAT
26838100 GA
1 GA
26838102 AGGATGATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.37, C:0.00, G:0.51, T:0.11
Consensus pattern (17 bp):
GAGAGAGGATGAGAGAT
Found at i:26841687 original size:13 final size:13
Alignment explanation
Indices: 26841669--26841693 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26841659 CATCTTCTTC
26841669 GTTTGGTACAGGA
1 GTTTGGTACAGGA
26841682 GTTTGGTACAGG
1 GTTTGGTACAGG
26841694 TACGGGTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.40, T:0.32
Consensus pattern (13 bp):
GTTTGGTACAGGA
Found at i:26842402 original size:14 final size:15
Alignment explanation
Indices: 26842371--26842403 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26842361 GAAACAGTTT
*
26842371 GAATTAAAAATGTTA
1 GAATTAAAAATGTGA
26842386 GAATTAAAAATG-GA
1 GAATTAAAAATGTGA
26842400 GAAT
1 GAAT
26842404 ATTAGAGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.55, C:0.00, G:0.18, T:0.27
Consensus pattern (15 bp):
GAATTAAAAATGTGA
Found at i:26843855 original size:22 final size:22
Alignment explanation
Indices: 26843830--26843901 Score: 65
Period size: 22 Copynumber: 3.2 Consensus size: 22
26843820 ACAATTTTTA
26843830 TTATTTATAGCAAATTAAAGAG
1 TTATTTATAGCAAATTAAAGAG
* *** * *
26843852 TTATTAATTTAAAATTCTATATA-
1 TTATTTATAGCAAA-T-TAAAGAG
26843875 TTATTTATAGCAAATTAAAGAG
1 TTATTTATAGCAAATTAAAGAG
26843897 TTATT
1 TTATT
26843902 AATTTAAAAG
Statistics
Matches: 35, Mismatches: 12, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
21 4 0.11
22 16 0.46
23 11 0.31
24 4 0.11
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.44
Consensus pattern (22 bp):
TTATTTATAGCAAATTAAAGAG
Found at i:26843877 original size:45 final size:45
Alignment explanation
Indices: 26843828--26843963 Score: 181
Period size: 45 Copynumber: 3.1 Consensus size: 45
26843818 GTACAATTTT
26843828 TATTATTTATAGCAAATTAAAGAGTTATTAATTTAAAATTCTATA
1 TATTATTTATAGCAAATTAAAGAGTTATTAATTTAAAATTCTATA
**
26843873 TATTATTTATAGCAAATTAAAGAGTTATTAATTTAAAAGAC--TA
1 TATTATTTATAGCAAATTAAAGAGTTATTAATTTAAAATTCTATA
* ***
26843916 T-TTATTTATAACAAATTAATA-ACAAATTAATTTAAAATTCTATA
1 TATTATTTATAGCAAATTAA-AGAGTTATTAATTTAAAATTCTATA
26843960 TATT
1 TATT
26843964 TATAACAAAT
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
42 31 0.39
43 4 0.05
44 3 0.04
45 41 0.52
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.43
Consensus pattern (45 bp):
TATTATTTATAGCAAATTAAAGAGTTATTAATTTAAAATTCTATA
Found at i:26843934 original size:42 final size:42
Alignment explanation
Indices: 26843830--26843976 Score: 179
Period size: 42 Copynumber: 3.4 Consensus size: 42
26843820 ACAATTTTTA
*
26843830 TTATTTATAGCAAATTAAAGAGTTATTAATTTAAAATTCTATAT
1 TTATTTATAACAAATTAAAGAGTTATTAATTTAAAATTC--TAT
* **
26843874 ATTATTTATAGCAAATTAAAGAGTTATTAATTTAAAAGACTAT
1 -TTATTTATAACAAATTAAAGAGTTATTAATTTAAAATTCTAT
***
26843917 TTATTTATAACAAATTAATA-ACAAATTAATTTAAAATTCTAT
1 TTATTTATAACAAATTAA-AGAGTTATTAATTTAAAATTCTAT
*
26843959 ATATTTATAACAAATTAA
1 TTATTTATAACAAATTAA
26843977 TATAACAGTA
Statistics
Matches: 92, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
42 51 0.55
43 4 0.04
45 37 0.40
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.42
Consensus pattern (42 bp):
TTATTTATAACAAATTAAAGAGTTATTAATTTAAAATTCTAT
Found at i:26843982 original size:13 final size:15
Alignment explanation
Indices: 26843964--26844009 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
26843954 TCTATATATT
26843964 TATAACA-AA-TTAA
1 TATAACAGAAGTTAA
26843977 TATAACAGTAAGTTAA
1 TATAACAG-AAGTTAA
*
26843993 TATAACACCAAGTTAA
1 TATAACA-GAAGTTAA
26844009 T
1 T
26844010 TAAAGAGTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 7 0.25
15 2 0.07
16 19 0.68
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (15 bp):
TATAACAGAAGTTAA
Found at i:26843994 original size:16 final size:16
Alignment explanation
Indices: 26843973--26844009 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
26843963 TTATAACAAA
**
26843973 TTAATATAACAGTAAG
1 TTAATATAACACCAAG
26843989 TTAATATAACACCAAG
1 TTAATATAACACCAAG
26844005 TTAAT
1 TTAAT
26844010 TAAAGAGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (16 bp):
TTAATATAACACCAAG
Found at i:26847756 original size:16 final size:18
Alignment explanation
Indices: 26847729--26847792 Score: 91
Period size: 16 Copynumber: 3.8 Consensus size: 18
26847719 AGCAAATTAG
26847729 CAATTAATACAATTAATA
1 CAATTAATACAATTAATA
26847747 CAATT-A-ACAATTAATA
1 CAATTAATACAATTAATA
26847763 CAATTAATACAATTAATA
1 CAATTAATACAATTAATA
*
26847781 -ATTTAATA-AATT
1 CAATTAATACAATT
26847793 TACTAATCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
16 19 0.44
17 9 0.21
18 15 0.35
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (18 bp):
CAATTAATACAATTAATA
Found at i:26847757 original size:25 final size:25
Alignment explanation
Indices: 26847723--26847792 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
26847713 TGTTATAGCA
*
26847723 AATTAGCAATTAATACAATTAATAC
1 AATTAACAATTAATACAATTAATAC
26847748 AATTAACAATTAATACAATTAATAC
1 AATTAACAATTAATACAATTAATAC
*
26847773 AATTAATAATTTAATA-AATT
1 AATTAACAA-TTAATACAATT
26847793 TACTAATCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 36 0.86
26 6 0.14
ACGTcount: A:0.54, C:0.09, G:0.01, T:0.36
Consensus pattern (25 bp):
AATTAACAATTAATACAATTAATAC
Found at i:26847794 original size:9 final size:9
Alignment explanation
Indices: 26847729--26847792 Score: 91
Period size: 9 Copynumber: 7.6 Consensus size: 9
26847719 AGCAAATTAG
26847729 CAATTAATA
1 CAATTAATA
26847738 CAATTAATA
1 CAATTAATA
26847747 CAATT-A-A
1 CAATTAATA
26847754 CAATTAATA
1 CAATTAATA
26847763 CAATTAATA
1 CAATTAATA
26847772 CAATTAATA
1 CAATTAATA
*
26847781 -ATTTAATA
1 CAATTAATA
26847789 -AATT
1 CAATT
26847793 TACTAATCAA
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
7 6 0.12
8 12 0.24
9 33 0.65
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (9 bp):
CAATTAATA
Found at i:26847875 original size:16 final size:16
Alignment explanation
Indices: 26847854--26847894 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
26847844 ATAATTTCAA
* *
26847854 AATTTTACTACCAATT
1 AATTTTAATAACAATT
26847870 AATTTTAATAACAATT
1 AATTTTAATAACAATT
*
26847886 AGTTTTAAT
1 AATTTTAAT
26847895 TTTATTAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.46
Consensus pattern (16 bp):
AATTTTAATAACAATT
Found at i:26849901 original size:62 final size:62
Alignment explanation
Indices: 26849769--26849963 Score: 164
Period size: 62 Copynumber: 3.1 Consensus size: 62
26849759 CGTGTGTTTG
* * * * *
26849769 GGCTATGTAACTCACTGTTTATGGTATAAGACCACATGGCCAAGGACACGGGAGTGTGCTTTA
1 GGCTGTGTAACTCACTGTTTATGGTATAAAACCACACGGCCAAGGACACGGGAGTGTAC-TCA
* * * * *
26849832 -GCCGTGTAACTCACTGTTTGTGGTATAAAACCACACGGTCAGGGACACGGGTGTGTAAC-CA
1 GGCTGTGTAACTCACTGTTTATGGTATAAAACCACACGGCCAAGGACACGGGAGTGT-ACTCA
* * * * * *
26849893 GGCTGTGTAATTCACTGTTTAT-ATTTCAAAACCACACGGGCAAGGCACATGGGCGTGTGAC-CA
1 GGCTGTGTAACTCACTGTTTATGGTAT-AAAACCACACGGCCAAGG-ACACGGGAGTGT-ACTCA
*
26849956 GGCCGTGT
1 GGCTGTGT
26849964 GTCATGTTAT
Statistics
Matches: 107, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
61 3 0.03
62 82 0.77
63 22 0.21
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (62 bp):
GGCTGTGTAACTCACTGTTTATGGTATAAAACCACACGGCCAAGGACACGGGAGTGTACTCA
Found at i:26852139 original size:17 final size:17
Alignment explanation
Indices: 26852117--26852150 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
26852107 TTTTACTTGG
26852117 ATTTTTAGATT-TTTATT
1 ATTTTTA-ATTATTTATT
26852134 ATTTTTAATTATTTATT
1 ATTTTTAATTATTTATT
26852151 TAATTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
ATTTTTAATTATTTATT
Found at i:26860038 original size:35 final size:36
Alignment explanation
Indices: 26859975--26860045 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
26859965 ATAAAAGAAA
26859975 AAAAAATTAAATTGTTCTAAAGGAAAAAATATAGGG
1 AAAAAATTAAATTGTTCTAAAGGAAAAAATATAGGG
26860011 AAAAAATTAAATTGTTCTAAAGG-AAAAATATAGGG
1 AAAAAATTAAATTGTTCTAAAGGAAAAAATATAGGG
26860046 GCTAATTGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 12 0.34
36 23 0.66
ACGTcount: A:0.55, C:0.03, G:0.17, T:0.25
Consensus pattern (36 bp):
AAAAAATTAAATTGTTCTAAAGGAAAAAATATAGGG
Found at i:26860087 original size:34 final size:34
Alignment explanation
Indices: 26860034--26860105 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
26860024 GTTCTAAAGG
* * *
26860034 AAAA-ATATAGGGGCTAATTGTAGAATTTAATCT
1 AAAATATATAGGGACCAATTGTAGAATTTAAGCT
26860067 AAAATATATAGGGACCAATTGTAGAATTTAAGCT
1 AAAATATATAGGGACCAATTGTAGAATTTAAGCT
26860101 AAAAT
1 AAAAT
26860106 TTTCGTTTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
33 4 0.11
34 31 0.89
ACGTcount: A:0.46, C:0.07, G:0.17, T:0.31
Consensus pattern (34 bp):
AAAATATATAGGGACCAATTGTAGAATTTAAGCT
Found at i:26860210 original size:31 final size:29
Alignment explanation
Indices: 26860175--26860246 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
26860165 TTAACGGCTC
*
26860175 AGTGACTAAAATGTTACAACACGATAACATA
1 AGTGACTAAAATGTAACAACAC-A-AACATA
* ***
26860206 AGTGACTAAAACGTAACATTTCAAACATA
1 AGTGACTAAAATGTAACAACACAAACATA
26860235 AGTGACTAAAAT
1 AGTGACTAAAAT
26860247 ATAATTTAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 17 0.49
30 1 0.03
31 17 0.49
ACGTcount: A:0.49, C:0.15, G:0.12, T:0.24
Consensus pattern (29 bp):
AGTGACTAAAATGTAACAACACAAACATA
Found at i:26863987 original size:18 final size:19
Alignment explanation
Indices: 26863964--26864009 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
26863954 TGCACATGAT
*
26863964 CATGGTCATGA-TGATGGA
1 CATGGTCATGAGTCATGGA
26863982 CATGGTCAT-AGTCATGGA
1 CATGGTCATGAGTCATGGA
*
26864000 CATGGACATG
1 CATGGTCATG
26864010 GGCATGAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 1 0.04
18 23 0.96
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.26
Consensus pattern (19 bp):
CATGGTCATGAGTCATGGA
Found at i:26864015 original size:18 final size:18
Alignment explanation
Indices: 26863977--26864015 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
26863967 GGTCATGATG
* *
26863977 ATGGACATGGTCATAGTC
1 ATGGACATGGACATAGGC
*
26863995 ATGGACATGGACATGGGC
1 ATGGACATGGACATAGGC
26864013 ATG
1 ATG
26864016 AGCATGGAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.23
Consensus pattern (18 bp):
ATGGACATGGACATAGGC
Found at i:26864175 original size:15 final size:15
Alignment explanation
Indices: 26864155--26864201 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
26864145 ATTATTTTTA
26864155 TTATATTTTAATTAT
1 TTATATTTTAATTAT
*
26864170 TTATATTTGAA--AT
1 TTATATTTTAATTAT
26864183 GTTATATTTTAATTAT
1 -TTATATTTTAATTAT
26864199 TTA
1 TTA
26864202 CGTTATCGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
13 2 0.07
14 10 0.37
15 13 0.48
16 2 0.07
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (15 bp):
TTATATTTTAATTAT
Found at i:26864447 original size:22 final size:21
Alignment explanation
Indices: 26864417--26864473 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 21
26864407 AGAAGAAAAT
*
26864417 AAAAAATAAATAAAAGTGTTA
1 AAAAAATAAAAAAAAGTGTTA
* *
26864438 AAAAACATAAAAAAAATTGTTC
1 AAAAA-ATAAAAAAAAGTGTTA
*
26864460 AAAACA-AAAAAAAA
1 AAAAAATAAAAAAAA
26864474 TATGGAGATC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 8 0.26
21 6 0.19
22 17 0.55
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (21 bp):
AAAAAATAAAAAAAAGTGTTA
Found at i:26866066 original size:27 final size:28
Alignment explanation
Indices: 26866016--26866068 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
26866006 AAATTTGATC
26866016 ATCAACCTTCTAAAAACAGTTGAATTTG
1 ATCAACCTTCTAAAAACAGTTGAATTTG
* * *
26866044 ATCAACTTTTTAAAAAGAG-TGAATT
1 ATCAACCTTCTAAAAACAGTTGAATT
26866069 GATGTTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 6 0.27
28 16 0.73
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (28 bp):
ATCAACCTTCTAAAAACAGTTGAATTTG
Found at i:26872244 original size:24 final size:24
Alignment explanation
Indices: 26872195--26872249 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
26872185 TAAAGTAGGT
* *
26872195 TATA-TATTATTTTTATAATATTA
1 TATATTATGATTTTTATAATATCA
26872218 TATATTATGATTTTTATTAAT-TCA
1 TATATTATGATTTTTA-TAATATCA
*
26872242 TATTTTAT
1 TATATTAT
26872250 TAATGATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 4 0.15
24 19 0.70
25 4 0.15
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (24 bp):
TATATTATGATTTTTATAATATCA
Found at i:26874924 original size:14 final size:14
Alignment explanation
Indices: 26874905--26874939 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
26874895 TGACATTTTT
* *
26874905 TTCTAATGATATTA
1 TTCTAACGATACTA
26874919 TTCTAACGATACTA
1 TTCTAACGATACTA
26874933 TTCTAAC
1 TTCTAAC
26874940 ATGTAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (14 bp):
TTCTAACGATACTA
Done.