Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 92 of 187
Found at i:26875591 original size:6 final size:6
Alignment explanation
Indices: 26875580--26875607 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
26875570 ATAGAGGTCA
26875580 AGCCAG AGCCAG AGCCAG AGCCAG AGCC
1 AGCCAG AGCCAG AGCCAG AGCCAG AGCC
26875608 CCAGCCCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.32, T:0.00
Consensus pattern (6 bp):
AGCCAG
Found at i:26876250 original size:48 final size:48
Alignment explanation
Indices: 26876186--26876277 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 48
26876176 TAACATTTCA
* *
26876186 ACATTAAAACACTAAAACTTGGAACAAATTTTGTAATATAAATTAAAT
1 ACATTAAAACACTAAAAATTGGAACAAACTTTGTAATATAAATTAAAT
* *
26876234 ACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATT
1 ACATTAAAACACTAAAAATTGGAACAAACTTTGTAATATAAATT
26876278 TTGTTATATA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.32
Consensus pattern (48 bp):
ACATTAAAACACTAAAAATTGGAACAAACTTTGTAATATAAATTAAAT
Found at i:26876287 original size:62 final size:62
Alignment explanation
Indices: 26876211--26876525 Score: 603
Period size: 62 Copynumber: 5.1 Consensus size: 62
26876201 AACTTGGAAC
*
26876211 AAATTTTGTAATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATAT
1 AAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATAT
26876273 AAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATAT
1 AAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATAT
* *
26876335 AAATTTTGTTATATAAATTAAATACATTGCAACATTAAAAATTGGAACAAACTTTATAATAT
1 AAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATAT
26876397 AAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATAT
1 AAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATAT
26876459 AAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATAT
1 AAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATAT
26876521 AAATT
1 AAATT
26876526 AGGTACATTG
Statistics
Matches: 248, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 248 1.00
ACGTcount: A:0.49, C:0.08, G:0.06, T:0.37
Consensus pattern (62 bp):
AAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATAT
Found at i:26877822 original size:16 final size:16
Alignment explanation
Indices: 26877801--26877853 Score: 97
Period size: 16 Copynumber: 3.3 Consensus size: 16
26877791 TTGGTTCACT
26877801 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
*
26877817 GTAATGGAATAGAAGC
1 GTAATGGAATAGAGGC
26877833 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
26877849 GTAAT
1 GTAAT
26877854 AGGTAATTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.40, C:0.06, G:0.34, T:0.21
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:26877921 original size:44 final size:46
Alignment explanation
Indices: 26877835--26877927 Score: 154
Period size: 44 Copynumber: 2.1 Consensus size: 46
26877825 ATAGAAGCGT
* *
26877835 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGG
1 AATGGAATAGAAGCGTAATAGGTAATTCTTGTGTTTGGTTGAATGG
26877881 AATGGAATAGAAGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAAGCGTAATAGGTAATTCTTGTGTTTGGTTGAATGG
26877925 AAT
1 AAT
26877928 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 24 0.53
45 3 0.07
46 18 0.40
ACGTcount: A:0.29, C:0.04, G:0.30, T:0.37
Consensus pattern (46 bp):
AATGGAATAGAAGCGTAATAGGTAATTCTTGTGTTTGGTTGAATGG
Found at i:26877923 original size:39 final size:44
Alignment explanation
Indices: 26877835--26877940 Score: 123
Period size: 39 Copynumber: 2.5 Consensus size: 44
26877825 ATAGAAGCGT
* *
26877835 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGG
1 AATGGAATAGAAGCGTAATAGGTAATTCTTGTGTTTGGTT--ATGG
26877881 AATGGAATAGAAGCGTAAT-GGT-ATTCTTGTGTTTGG-T-T-G
1 AATGGAATAGAAGCGTAATAGGTAATTCTTGTGTTTGGTTATGG
* *
26877920 AATGGAATAGAGGTGTAATAG
1 AATGGAATAGAAGCGTAATAG
26877941 CATAAGTAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
39 18 0.33
40 2 0.04
43 1 0.02
44 13 0.24
45 3 0.05
46 18 0.33
ACGTcount: A:0.30, C:0.04, G:0.31, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAAGCGTAATAGGTAATTCTTGTGTTTGGTTATGG
Found at i:26898575 original size:33 final size:33
Alignment explanation
Indices: 26898528--26898593 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
26898518 TACTCAATGA
*
26898528 GGGAAAGAAACAAGTATATATATAAACTCTCTT
1 GGGAAAGAAACAAGTATATATATAAACCCTCTT
** *
26898561 GGGAAAGAGGCAAGTCTATATATAAACCCTCTT
1 GGGAAAGAAACAAGTATATATATAAACCCTCTT
26898594 AGAATCTTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (33 bp):
GGGAAAGAAACAAGTATATATATAAACCCTCTT
Found at i:26905206 original size:16 final size:16
Alignment explanation
Indices: 26905185--26905220 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
26905175 TGAATCCTTA
*
26905185 AAATCTTTAAATCCCT
1 AAATCTTGAAATCCCT
*
26905201 AAATCTTGAAATCCTT
1 AAATCTTGAAATCCCT
26905217 AAAT
1 AAAT
26905221 TGTTAGCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.42, C:0.19, G:0.03, T:0.36
Consensus pattern (16 bp):
AAATCTTGAAATCCCT
Found at i:26908741 original size:28 final size:28
Alignment explanation
Indices: 26908708--26908761 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
26908698 TATAGTGTGG
26908708 GCCTTAGCCAAATACAGTAACAGTATGA
1 GCCTTAGCCAAATACAGTAACAGTATGA
* * *
26908736 GCCTTATCCCAATACAGTATCAGTAT
1 GCCTTAGCCAAATACAGTAACAGTAT
26908762 AATGCAGTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (28 bp):
GCCTTAGCCAAATACAGTAACAGTATGA
Found at i:26908891 original size:26 final size:26
Alignment explanation
Indices: 26908862--26908915 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
26908852 AACACACCAA
* * *
26908862 TATCGCAGCAAAGTTGCCAGTAATAG
1 TATCACAGCAAAGCTGCCAGTAACAG
* *
26908888 TATCACAGCGAAGCTGCTAGTAACAG
1 TATCACAGCAAAGCTGCCAGTAACAG
26908914 TA
1 TA
26908916 AATGTGGCAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
TATCACAGCAAAGCTGCCAGTAACAG
Found at i:26909186 original size:27 final size:28
Alignment explanation
Indices: 26909108--26909186 Score: 126
Period size: 27 Copynumber: 2.9 Consensus size: 28
26909098 GTATACCAGC
*
26909108 CATTTTACCCTATGAGGGTATTT-TAGT
1 CATTTTACCCTATGAGGGTATTTCGAGT
26909135 CATTTTACCCTATGAGGGTATTTCGA-T
1 CATTTTACCCTATGAGGGTATTTCGAGT
*
26909162 CATTTTACCCTATGAGAGTATTTCG
1 CATTTTACCCTATGAGGGTATTTCG
26909187 GGGGTATTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.42
Consensus pattern (28 bp):
CATTTTACCCTATGAGGGTATTTCGAGT
Found at i:26909193 original size:38 final size:38
Alignment explanation
Indices: 26909150--26909222 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
26909140 TACCCTATGA
*
26909150 GGGTATTTCGATCATTTTACCCTATGAGAGTATTTCGG
1 GGGTATTTCGATCAATTTACCCTATGAGAGTATTTCGG
* * * *
26909188 GGGTATTTTGGTCAATTTACCTTATGAGGGTATTT
1 GGGTATTTCGATCAATTTACCCTATGAGAGTATTT
26909223 TGGTCATTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.21, C:0.12, G:0.25, T:0.42
Consensus pattern (38 bp):
GGGTATTTCGATCAATTTACCCTATGAGAGTATTTCGG
Found at i:26909230 original size:65 final size:65
Alignment explanation
Indices: 26909123--26909251 Score: 186
Period size: 65 Copynumber: 2.0 Consensus size: 65
26909113 TACCCTATGA
*
26909123 GGGTATTTTAGTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGAGAGTATTTCGG
1 GGGTATTTTAGTCAATTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGAGAGTATTTCGG
* * * * * * *
26909188 GGGTATTTTGGTCAATTTACCTTATGAGGGTATTTTGGTCATTTTACTCTATGGGGGTATTTCG
1 GGGTATTTTAGTCAATTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGAGAGTATTTCG
26909252 ATCATTTATC
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
65 56 1.00
ACGTcount: A:0.19, C:0.13, G:0.24, T:0.43
Consensus pattern (65 bp):
GGGTATTTTAGTCAATTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGAGAGTATTTCGG
Found at i:26909256 original size:27 final size:27
Alignment explanation
Indices: 26909186--26909258 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
26909176 AGAGTATTTC
*
26909186 GGGGGTATTTTGGTCAATTTACCTTAT
1 GGGGGTATTTTGGTCATTTTACCTTAT
*
26909213 GAGGGTATTTTGGTCATTTTA-CTCTAT
1 GGGGGTATTTTGGTCATTTTACCT-TAT
* *
26909240 GGGGGTATTTCGATCATTT
1 GGGGGTATTTTGGTCATTT
26909259 ATCGGCCTCT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.05
27 38 0.95
ACGTcount: A:0.18, C:0.11, G:0.26, T:0.45
Consensus pattern (27 bp):
GGGGGTATTTTGGTCATTTTACCTTAT
Found at i:26910700 original size:50 final size:50
Alignment explanation
Indices: 26910641--26910764 Score: 122
Period size: 50 Copynumber: 2.5 Consensus size: 50
26910631 TATTGAGATT
* * * * *
26910641 ATGAAAGGTCCTATGTAAGACCATGGCTACGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGGCTACGACATGGCATGGGCACCGAA
**** * **
26910691 ATGAGAGGTCCCCCAAAAGACCATGTCTGGGACATGGCATGGGCACCGAA
1 ATGAGAGGTCCCATGTAAGACCATGGCTACGACATGGCATGGGCACCGAA
**
26910741 ATGAGAACTCCCATGTAAGACCAT
1 ATGAGAGGTCCCATGTAAGACCAT
26910765 ATCTGGGATA
Statistics
Matches: 56, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
50 56 1.00
ACGTcount: A:0.31, C:0.24, G:0.27, T:0.18
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGGCTACGACATGGCATGGGCACCGAA
Found at i:26910833 original size:49 final size:49
Alignment explanation
Indices: 26910707--26910834 Score: 161
Period size: 49 Copynumber: 2.6 Consensus size: 49
26910697 GGTCCCCCAA
* *
26910707 AAGACCATGTCTGGGACATGGCATGGGCACCGAAATGAGAACTCCCATGT
1 AAGACCATGTCTGGGACATGGCATTGGCA-CGAAAAGAGAACTCCCATGT
* *
26910757 AAGACCATATCTGGGATATGGCATTGGCA-GTAAAAGA-AACATCCCATGT
1 AAGACCATGTCTGGGACATGGCATTGGCACG-AAAAGAGAAC-TCCCATGT
* *
26910806 AAGACCATGTCTGGGACATAGCTTTGGCA
1 AAGACCATGTCTGGGACATGGCATTGGCA
26910835 TGTTATTATC
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
48 4 0.06
49 38 0.56
50 26 0.38
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (49 bp):
AAGACCATGTCTGGGACATGGCATTGGCACGAAAAGAGAACTCCCATGT
Found at i:26912296 original size:5 final size:5
Alignment explanation
Indices: 26912286--26912323 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
26912276 TGGAAGATTA
* *
26912286 AAAAT AAAAT AAAAC AATA- AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
26912324 GTGGATAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
4 3 0.10
5 26 0.90
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:26921126 original size:56 final size:56
Alignment explanation
Indices: 26921041--26921188 Score: 271
Period size: 56 Copynumber: 2.7 Consensus size: 56
26921031 GGTAAAGAGA
26921041 TCCCATGT-AGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTACGAAAGG
1 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTACGAAAGG
*
26921096 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTATGAAAGG
1 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTACGAAAGG
*
26921152 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
1 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCA
26921189 CCGAGATGAG
Statistics
Matches: 90, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
55 8 0.09
56 82 0.91
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (56 bp):
TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTACGAAAGG
Found at i:26921203 original size:50 final size:52
Alignment explanation
Indices: 26921036--26921284 Score: 238
Period size: 56 Copynumber: 4.7 Consensus size: 52
26921026 ATTTGGGTAA
* * *
26921036 AGAGATCCCATGT-AGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA-CGAGA-T--G
* * *
26921091 AAAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA-CGAG---ATG
*
26921147 AAAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C-CGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAGATG
** * * *
26921197 AGAGGTCCCCCGTAAGACCATGTCTGGAACATGGCATGGGCA-C-CGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAGATG
** * * *
26921247 AGAATTCCCATGTAAGACCATATCTGGGATATGACATT
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATT
26921285 AGTTTTAAAA
Statistics
Matches: 171, Mismatches: 19, Indels: 13
0.84 0.09 0.06
Matches are distributed among these distances:
50 76 0.44
53 3 0.02
55 12 0.07
56 78 0.46
58 1 0.01
59 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (52 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAGATG
Found at i:26926427 original size:51 final size:51
Alignment explanation
Indices: 26926341--26926453 Score: 181
Period size: 51 Copynumber: 2.2 Consensus size: 51
26926331 CCACTATGTG
* * *
26926341 CAACACCAATATTATCCAGTCCATCTGATGTTGCAAAATCACCAGCATATT
1 CAACAGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATT
* *
26926392 CATCAGCAACATTATCCACTCCATTTGATGTTGCAAAATCACCAGCATATT
1 CAACAGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATT
26926443 CAACAGCAACA
1 CAACAGCAACA
26926454 ACTTCACTAT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.36, C:0.28, G:0.10, T:0.26
Consensus pattern (51 bp):
CAACAGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATT
Found at i:26926655 original size:33 final size:34
Alignment explanation
Indices: 26926586--26926690 Score: 101
Period size: 33 Copynumber: 3.1 Consensus size: 34
26926576 CTCTCCTACT
* * *
26926586 TCACCCTCC-CCACCAGATTCTACCTTTTCCAT-A
1 TCACCTTCCACCATCAGATTCTACCTCTT-CATCA
*
26926619 TCACCTT-CACCATCAGATTCTACCCCTTCATCA
1 TCACCTTCCACCATCAGATTCTACCTCTTCATCA
* * *
26926652 TCACCTTCCCCCATCA-ACTTCCACCTCTTCAACA
1 TCACCTTCCACCATCAGA-TTCTACCTCTTCATCA
26926686 TCACC
1 TCACC
26926691 CTCCCCAGTA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
32 4 0.07
33 31 0.52
34 25 0.42
ACGTcount: A:0.23, C:0.47, G:0.02, T:0.29
Consensus pattern (34 bp):
TCACCTTCCACCATCAGATTCTACCTCTTCATCA
Found at i:26926682 original size:34 final size:34
Alignment explanation
Indices: 26926618--26926696 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 34
26926608 CCTTTTCCAT
* * *
26926618 ATCACCTT-CACCATCAGATTCTACCCCTTCATC
1 ATCACCTTCCCCCATCAGATTCCACCCCTTCAAC
*
26926651 ATCACCTTCCCCCATCA-ACTTCCACCTCTTCAAC
1 ATCACCTTCCCCCATCAGA-TTCCACCCCTTCAAC
*
26926685 ATCACCCTCCCC
1 ATCACCTTCCCC
26926697 AGTAGTCAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
33 9 0.23
34 30 0.77
ACGTcount: A:0.23, C:0.49, G:0.01, T:0.27
Consensus pattern (34 bp):
ATCACCTTCCCCCATCAGATTCCACCCCTTCAAC
Found at i:26927718 original size:14 final size:15
Alignment explanation
Indices: 26927699--26927741 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 15
26927689 GGATGCTAAC
26927699 GATTTAAGGATT-AA
1 GATTTAAGGATTGAA
*
26927713 GATTTAGGGATTTGAA
1 GATTTAAGGA-TTGAA
26927729 GATTTTAAGGATT
1 GA-TTTAAGGATT
26927742 CAATGAAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 9 0.38
15 2 0.08
16 6 0.25
17 7 0.29
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.40
Consensus pattern (15 bp):
GATTTAAGGATTGAA
Found at i:26929614 original size:45 final size:44
Alignment explanation
Indices: 26929564--26929665 Score: 123
Period size: 45 Copynumber: 2.3 Consensus size: 44
26929554 CATGATGCCA
* * * *
26929564 TTACTCATTGTTCCCATGATGTCATAGCATCTTTCAACTATGGTT
1 TTACTCATT-TTACCATGATGACATAGCATCTTTCAACTATAGTC
** *
26929609 TTACTCACTTTTATTATGATGACATAGCATTTTTCAACTATAGTC
1 TTACTCA-TTTTACCATGATGACATAGCATCTTTCAACTATAGTC
26929654 TTACTCATTTTA
1 TTACTCATTTTA
26929666 GGCGTATAGC
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
44 5 0.10
45 42 0.86
46 2 0.04
ACGTcount: A:0.25, C:0.20, G:0.10, T:0.45
Consensus pattern (44 bp):
TTACTCATTTTACCATGATGACATAGCATCTTTCAACTATAGTC
Found at i:26938664 original size:17 final size:17
Alignment explanation
Indices: 26938642--26938675 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
26938632 TATAGGGGCT
26938642 GCGTCTAGATAAAAGAG
1 GCGTCTAGATAAAAGAG
26938659 GCGTCTAGATAAAAGAG
1 GCGTCTAGATAAAAGAG
26938676 AATTAGGGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.29, T:0.18
Consensus pattern (17 bp):
GCGTCTAGATAAAAGAG
Found at i:26940913 original size:22 final size:22
Alignment explanation
Indices: 26940869--26940910 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
26940859 CTCGTAAGTC
*
26940869 AAGGAAAATAATATGCATAAAT
1 AAGGAAAATAATATACATAAAT
*
26940891 AAGGAAAA-GATATACATAAA
1 AAGGAAAATAATATACATAAA
26940911 ATATTCTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.62, C:0.05, G:0.14, T:0.19
Consensus pattern (22 bp):
AAGGAAAATAATATACATAAAT
Found at i:26944616 original size:73 final size:73
Alignment explanation
Indices: 26944530--26944730 Score: 402
Period size: 73 Copynumber: 2.8 Consensus size: 73
26944520 AAGACATCAA
26944530 GTATTGGATTCTTTATTTTGATGAAATCCATAACCTATCTACACATCCATTAATATAATCAAAAG
1 GTATTGGATTCTTTATTTTGATGAAATCCATAACCTATCTACACATCCATTAATATAATCAAAAG
26944595 AGTTCCAT
66 AGTTCCAT
26944603 GTATTGGATTCTTTATTTTGATGAAATCCATAACCTATCTACACATCCATTAATATAATCAAAAG
1 GTATTGGATTCTTTATTTTGATGAAATCCATAACCTATCTACACATCCATTAATATAATCAAAAG
26944668 AGTTCCAT
66 AGTTCCAT
26944676 GTATTGGATTCTTTATTTTGATGAAATCCATAACCTATCTACACATCCATTAATA
1 GTATTGGATTCTTTATTTTGATGAAATCCATAACCTATCTACACATCCATTAATA
26944731 AATATCTTAT
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 128 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (73 bp):
GTATTGGATTCTTTATTTTGATGAAATCCATAACCTATCTACACATCCATTAATATAATCAAAAG
AGTTCCAT
Found at i:26952535 original size:72 final size:72
Alignment explanation
Indices: 26952444--26952609 Score: 314
Period size: 72 Copynumber: 2.3 Consensus size: 72
26952434 GAATTGATAA
26952444 TGGAATTTGTCCACTCAATTGGATCCCCGACAAGTCTAATTGAGTGAGCTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGATCCCCGACAAGTCTAATTGAGTGAGCTGCAAGAGGTTCCCCA
26952509 ATGATCT
66 ATGATCT
* *
26952516 TGGAATTTGTCCACTCAATTGGATCCCCGACCAGTCTAATTTAGTGAGCTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGATCCCCGACAAGTCTAATTGAGTGAGCTGCAAGAGGTTCCCCA
26952581 ATGATCT
66 ATGATCT
26952588 TGGAATTTGTCCACTCAATTGG
1 TGGAATTTGTCCACTCAATTGG
26952610 TTGCCTCCCA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
72 92 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (72 bp):
TGGAATTTGTCCACTCAATTGGATCCCCGACAAGTCTAATTGAGTGAGCTGCAAGAGGTTCCCCA
ATGATCT
Found at i:26953827 original size:29 final size:29
Alignment explanation
Indices: 26953759--26953828 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
26953749 ATTATACTCA
* *
26953759 TTTTCCCATGTTGGTACCTAAACTTATTTT
1 TTTTCCCAAG-TGGTACATAAACTTATTTT
** *
26953789 TGGTCACAAGTGGTACATAAAC-TACTTTT
1 TTTTCCCAAGTGGTACATAAACTTA-TTTT
26953818 TTTTCCCAAGT
1 TTTTCCCAAGT
26953829 TACTACTGCC
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
28 2 0.06
29 23 0.74
30 6 0.19
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.43
Consensus pattern (29 bp):
TTTTCCCAAGTGGTACATAAACTTATTTT
Found at i:26962110 original size:72 final size:72
Alignment explanation
Indices: 26961993--26962141 Score: 253
Period size: 72 Copynumber: 2.1 Consensus size: 72
26961983 GAATTGACGA
** *
26961993 TGGAATTTGTCCACTCAATTGGTTCTGCGACAAGTCTAAAAGAGTGAGTTGCAAGTGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTCCCCGACAAGTCTAAAAGAGTGAGTTGCAAGAGGTTCCCCA
26962058 ATGATCT
66 ATGATCT
*
26962065 TGGAATTTGTCCACTCAATTGGTTCCCCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTCCCCGACAAGTCTAAAAGAGTGAGTTGCAAGAGGTTCCCCA
*
26962130 GTGATCT
66 ATGATCT
26962137 TGGAA
1 TGGAA
26962142 CCGTTCCTGA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (72 bp):
TGGAATTTGTCCACTCAATTGGTTCCCCGACAAGTCTAAAAGAGTGAGTTGCAAGAGGTTCCCCA
ATGATCT
Found at i:26963812 original size:61 final size:61
Alignment explanation
Indices: 26963692--26963814 Score: 140
Period size: 61 Copynumber: 2.0 Consensus size: 61
26963682 TAAATATATA
* * * *
26963692 TATTAAAATTTTTAGAATTAGAACTAAATTGCTAATTTTTGAAAATATTAAGGGTTAAATT
1 TATTAAAATTTTTAGAATTAGAACTAAAATGCTAAGTTTTGAAAACATTAAGGGCTAAATT
* * * ** *
26963753 TATTAAATTTTTTAGAGTTTGAACTAAAATGAC-AAGTTTTGTTAACATTCAGGGCTAAATT
1 TATTAAAATTTTTAGAATTAGAACTAAAATG-CTAAGTTTTGAAAACATTAAGGGCTAAATT
26963814 T
1 T
26963815 GTTGATTTTT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
61 50 0.98
62 1 0.02
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (61 bp):
TATTAAAATTTTTAGAATTAGAACTAAAATGCTAAGTTTTGAAAACATTAAGGGCTAAATT
Found at i:26963991 original size:21 final size:21
Alignment explanation
Indices: 26963965--26964004 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
26963955 ATATTTACTT
26963965 TCGAAAAGGTTAACAACTAAA
1 TCGAAAAGGTTAACAACTAAA
26963986 TCGAAAAGGTTAACAACTA
1 TCGAAAAGGTTAACAACTA
26964005 CTTCCTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (21 bp):
TCGAAAAGGTTAACAACTAAA
Found at i:26964394 original size:24 final size:24
Alignment explanation
Indices: 26964367--26964413 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
26964357 TACCAATGCA
26964367 ACTTTTCACCATAGGAAAAACTTC
1 ACTTTTCACCATAGGAAAAACTTC
26964391 ACTTTTCACCATAGGAAAAACTT
1 ACTTTTCACCATAGGAAAAACTT
26964414 TCTGATAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (24 bp):
ACTTTTCACCATAGGAAAAACTTC
Found at i:26966894 original size:90 final size:91
Alignment explanation
Indices: 26966783--26966999 Score: 298
Period size: 90 Copynumber: 2.4 Consensus size: 91
26966773 TTTAAGGGTG
* * * * *
26966783 CAAACTTTTTCAAAAATAGCAACTAAACCCCT-GTTCT-TTTTAT-GCACTCATTTGGGTACTTG
1 CAAAC-TTTTCAAAAAAAGCAATTAAGCCCCTACTT-TATTTTATGGCACTCAATTGGGTACTTG
*
26966845 AACTTTCAAAATACATCAAAAAGGCCCT
64 AACTTTCAAAATACATCAAAAAGACCCT
* *
26966873 CAAACATTTTCAAAAAAAGCAATTAGGCCCCTACTTTATTTTTTGGCACTCAATTGGGTACTTGA
1 CAAAC-TTTTCAAAAAAAGCAATTAAGCCCCTACTTTATTTTATGGCACTCAATTGGGTACTTGA
*
26966938 ACTTTCAAAATGCATCAAAAAGACCCT
65 ACTTTCAAAATACATCAAAAAGACCCT
26966965 CAAACTTTT-AAAAAAAGCAATTAAGCCCCTACTTT
1 CAAACTTTTCAAAAAAAGCAATTAAGCCCCTACTTT
26967000 TATCTGTTTT
Statistics
Matches: 113, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
90 53 0.47
91 11 0.10
92 49 0.43
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (91 bp):
CAAACTTTTCAAAAAAAGCAATTAAGCCCCTACTTTATTTTATGGCACTCAATTGGGTACTTGAA
CTTTCAAAATACATCAAAAAGACCCT
Found at i:26966938 original size:92 final size:90
Alignment explanation
Indices: 26966826--26966999 Score: 294
Period size: 92 Copynumber: 1.9 Consensus size: 90
26966816 TTCTTTTTAT
* *
26966826 GCACTCATTTGGGTACTTGAACTTTCAAAATACATCAAAAAGGCCCTCAAACATTTTCAAAAAAA
1 GCACTCAATTGGGTACTTGAACTTTCAAAATACATCAAAAAGACCCTCAAAC-TTTT-AAAAAAA
*
26966891 GCAATTAGGCCCCTACTTTATTTTTTG
64 GCAATTAAGCCCCTACTTTATTTTTTG
*
26966918 GCACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAACTTTTAAAAAAAGC
1 GCACTCAATTGGGTACTTGAACTTTCAAAATACATCAAAAAGACCCTCAAACTTTTAAAAAAAGC
26966983 AATTAAGCCCCTACTTT
66 AATTAAGCCCCTACTTT
26967000 TATCTGTTTT
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
90 25 0.32
91 4 0.05
92 49 0.63
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.29
Consensus pattern (90 bp):
GCACTCAATTGGGTACTTGAACTTTCAAAATACATCAAAAAGACCCTCAAACTTTTAAAAAAAGC
AATTAAGCCCCTACTTTATTTTTTG
Found at i:26967177 original size:28 final size:28
Alignment explanation
Indices: 26967121--26967176 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
26967111 CTTTTGATGG
*
26967121 ATTTTATTTTTTTTATGATTTTTATAAA
1 ATTTTATTTTTTTGATGATTTTTATAAA
*
26967149 ATTTTA-TTTTTTGACT-ATTTTTCTAAA
1 ATTTTATTTTTTTGA-TGATTTTTATAAA
26967176 A
1 A
26967177 AAAATTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.64
Consensus pattern (28 bp):
ATTTTATTTTTTTGATGATTTTTATAAA
Found at i:26967432 original size:91 final size:89
Alignment explanation
Indices: 26967281--26967475 Score: 279
Period size: 91 Copynumber: 2.2 Consensus size: 89
26967271 TAAGAGTAGG
26967281 GGCTTAATTGCTTTTTTG--AAAAAAAATTAAGGCCTTTTTGATGCATTATGAAAGTTCAAGTAC
1 GGCTTAATTGCTTTTTTGAAAAAAAAAATTAAGGCCTTTTTGATGCATTATGAAAGTTCAAGTAC
* *
26967344 CCAATTGAGTGGGAAAAAAATAGA
66 CCAATTGAGCGGGAAAAAAAAAGA
** *
26967368 GGCTTAATTG-TTTCTTTGAAAAAAAAAATTTAAAGGGTTTTTTTATGCATTATGAAAGTTCAAG
1 GGCTTAATTGCTTT-TTTGAAAAAAAAAA-TT-AAGGCCTTTTTGATGCATTATGAAAGTTCAAG
*
26967432 TACCCAATTGAGCGGGAAAAAAAAAGG
63 TACCCAATTGAGCGGGAAAAAAAAAGA
*
26967459 GGTTTAATTGCTTTTTT
1 GGCTTAATTGCTTTTTT
26967476 TGAAGAAGTG
Statistics
Matches: 95, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
86 3 0.03
87 14 0.15
89 8 0.08
90 2 0.02
91 65 0.68
92 3 0.03
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.35
Consensus pattern (89 bp):
GGCTTAATTGCTTTTTTGAAAAAAAAAATTAAGGCCTTTTTGATGCATTATGAAAGTTCAAGTAC
CCAATTGAGCGGGAAAAAAAAAGA
Found at i:26982176 original size:42 final size:42
Alignment explanation
Indices: 26982068--26982272 Score: 135
Period size: 42 Copynumber: 4.9 Consensus size: 42
26982058 AGAGCCTCCA
*
26982068 GCACCTTGGTGGCTCA--GATGTGTGGGAGCCTCAG-A-CA-CG
1 GCACCTTGGT-GCT-ATGGATGTGCGGGAGCCTCAGCACCATCG
* * * *
26982107 GTAACCTTGATGCT-TGGATGTACGGGAGCCTCGAGCACCATTG
1 G-CACCTTGGTGCTATGGATGTGCGGGAGCCTC-AGCACCATCG
* *
26982150 GCACCTTGGTGC-ATGGATGTGTGGGAGCATCAGACACCATCG
1 GCACCTTGGTGCTATGGATGTGCGGGAGCCTCAG-CACCATCG
** * * *
26982192 GCAAGTTAG-GCTATTGGTTGTG-GGAAGCCTCGGAG-ACCATCG
1 GCACCTTGGTGCTA-TGGATGTGCGGGAGCCTC--AGCACCATCG
*
26982234 GCACCTCGGTGCTAT-GATGTGCGGGAGCCTTCAGCACCA
1 GCACCTTGGTGCTATGGATGTGCGGGAGCC-TCAGCACCA
26982273 AAGCTAAAGT
Statistics
Matches: 126, Mismatches: 23, Indels: 31
0.70 0.13 0.17
Matches are distributed among these distances:
39 18 0.14
40 9 0.07
41 12 0.10
42 70 0.56
43 15 0.12
44 2 0.02
ACGTcount: A:0.20, C:0.24, G:0.33, T:0.22
Consensus pattern (42 bp):
GCACCTTGGTGCTATGGATGTGCGGGAGCCTCAGCACCATCG
Found at i:26982509 original size:24 final size:24
Alignment explanation
Indices: 26982482--26982560 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
26982472 CCGGTTAGGT
*
26982482 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
26982506 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
26982530 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
26982554 TTCCGGT
1 TCCCGGT
26982561 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:26982642 original size:42 final size:43
Alignment explanation
Indices: 26982578--26983188 Score: 430
Period size: 43 Copynumber: 14.4 Consensus size: 43
26982568 GCCCTTGGTC
* *
26982578 GTGCGGGAGCCTCGGGCACCATCGGCACCCT-GGTGCTAGGAT
1 GTGCAGGAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGGAT
* * ** * **
26982620 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTAT
1 GTGCAGGAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGG-AT
* * *
26982664 -TGCAGGAGCCTCGGGCGCCATCGGCA-CCTCGGTGCTTCGAT
1 GTGCAGGAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGGAT
* *
26982705 GTGCGGGAGCCTCGGGCACCATCGGCACCCT-GGTGCTAGGAT
1 GTGCAGGAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGGAT
* * ** * **
26982747 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTAT
1 GTGCAGGAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGG-AT
* * *
26982791 -TGCAGGAGCCTCGGGCGCCATCGGCA-CCTCGGTGCTTCGAT
1 GTGCAGGAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGGAT
* *
26982832 GTGCGGGAGCCTCGGGCACCATCGGCA-CCTTGGTGCTTGGAT
1 GTGCAGGAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGGAT
* * * * * **
26982874 GT-CCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGG-T
1 GTGCAG-GAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGGAT
* ** * **
26982916 CGTGC-GAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCAG-GAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGGAT
* *
26982959 CGTGCGGGAGCCTCGGGCACCATCGGCA-CCTTGGTGCTTGGAT
1 -GTGCAGGAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGGAT
* * * * * **
26983002 GT-CCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGG-T
1 GTGCAG-GAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGGAT
* ** * **
26983044 CGTGC-GAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCAG-GAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGGAT
* *
26983087 CGTGCGGGAGCCTCGGGCACCATCGGCACCCT-GGTGCTAGGAT
1 -GTGCAGGAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGGAT
* * ** * **
26983130 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTAT
1 GTGCAGGAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGG-AT
26983174 -TGCAGGAGCCTCGGG
1 GTGCAGGAGCCTCGGG
26983189 GGCCNNNNNN
Statistics
Matches: 454, Mismatches: 94, Indels: 41
0.77 0.16 0.07
Matches are distributed among these distances:
41 8 0.02
42 217 0.48
43 219 0.48
44 10 0.02
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (43 bp):
GTGCAGGAGCCTCGGGCACCATCGGCACCCTAGGTGCTTGGAT
Found at i:26982685 original size:43 final size:43
Alignment explanation
Indices: 26982565--26983188 Score: 402
Period size: 42 Copynumber: 14.7 Consensus size: 43
26982555 TCCGGTAGCA
** * *
26982565 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCC
1 TAGGCCCTTGGTATTGCAGGAGCCTCGGGCACCATCGGCAACC
** * * * *
26982608 T-GGTGCTAGG-ATGTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTAT-TGCAGGAGCCTCGGGCACCATCGGCAACC
* *
26982650 TAAGCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTATTGCAGGAGCCTCGGGCACCATCGGCAACC
* ** * * *
26982692 TCGGTGCTTCG-ATGTGCGGGAGCCTCGGGCACCATCGGCACCC
1 TAGGCCCTTGGTAT-TGCAGGAGCCTCGGGCACCATCGGCAACC
** * * * *
26982735 T-GGTGCTAGG-ATGTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTAT-TGCAGGAGCCTCGGGCACCATCGGCAACC
* *
26982777 TAAGCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTATTGCAGGAGCCTCGGGCACCATCGGCAACC
* ** * *
26982819 TCGGTGCTTCG-ATGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTAT-TGCAGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
26982861 TTGGTGCTTGG-A-TGTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGGTATTG-CAG-GAGCCTCGGGCACCATCGGCAACC
** * *
26982904 TAGGCCCTTGGTCGTGC-GAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTATTGCAG-GAGCCTCGGGCACCATCGGCAACC
* ** *
26982947 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTATTGCAGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
26982989 TTGGTGCTTGG-A-TGTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGGTATTG-CAG-GAGCCTCGGGCACCATCGGCAACC
** * *
26983032 TAGGCCCTTGGTCGTGC-GAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTATTGCAG-GAGCCTCGGGCACCATCGGCAACC
* ** * *
26983075 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCC
1 TAGGCCCTTGGTATTGCAGGAGCCTCGGGCACCATCGGCAACC
** * * * *
26983118 T-GGTGCTAGG-ATGTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTAT-TGCAGGAGCCTCGGGCACCATCGGCAACC
*
26983160 TAAGCCCTTGGTATTGCAGGAGCCTCGGG
1 TAGGCCCTTGGTATTGCAGGAGCCTCGGG
26983189 GGCCNNNNNN
Statistics
Matches: 453, Mismatches: 105, Indels: 46
0.75 0.17 0.08
Matches are distributed among these distances:
40 4 0.01
41 8 0.02
42 214 0.47
43 213 0.47
44 10 0.02
45 4 0.01
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTATTGCAGGAGCCTCGGGCACCATCGGCAACC
Found at i:26982714 original size:85 final size:85
Alignment explanation
Indices: 26982565--26983188 Score: 464
Period size: 85 Copynumber: 7.3 Consensus size: 85
26982555 TCCGGTAGCA
** * * *
26982565 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCT-GGTGCTAGGATGTGCAGGAG
1 TAGGCCCTTGGTATTGCAGGAGCCTCGGGCACCATCGGCA-CCTAGGTGCTTGGATGTGCGGGAG
* * *
26982629 CCCCGGACACCATCGGCAAAC
65 CCTCGGGCACCATCGGCAACC
* * * *
26982650 TAAGCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTATTGCAGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
*
26982715 CTCGGGCACCATCGGCACCC
66 CTCGGGCACCATCGGCAACC
** * * * * * ** *
26982735 T-GGTGCTAGG-ATGTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTAT-TGCAGG
1 TAGGCCCTTGGTAT-TGCAGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGG-ATGTGCGGG
*
26982797 AGCCTCGGGCGCCATCGGC-ACC
63 AGCCTCGGGCACCATCGGCAACC
* ** * * * * * *
26982819 TCGGTGCTTCG-ATGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAA
1 TAGGCCCTTGGTAT-TGCAGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAG
* *
26982883 CCTCGCGCACCATCGACAACC
65 CCTCGGGCACCATCGGCAACC
** * * * **
26982904 TAGGCCCTTGGTCGTGC-GAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGTGCGGG
1 TAGGCCCTTGGTATTGCAG-GAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGG
26982967 AGCCTCGGGCACCATCGGC-ACC
63 AGCCTCGGGCACCATCGGCAACC
* ** * * * * ** *
26982989 TTGGTGCTTGG-A-TGTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGG-TCGTGCGA
1 TAGGCCCTTGGTATTG-CAG-GAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGG
* *
26983051 GAGGCTCGGGCACCATCGGCAAAC
62 GAGCCTCGGGCACCATCGGCAACC
* ** * * *
26983075 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCT-GGTGCTAGGATGTGCAGGAG
1 TAGGCCCTTGGTATTGCAGGAGCCTCGGGCACCATCGGCA-CCTAGGTGCTTGGATGTGCGGGAG
* * *
26983139 CCCCGGACACCATCGGCAAAC
65 CCTCGGGCACCATCGGCAACC
*
26983160 TAAGCCCTTGGTATTGCAGGAGCCTCGGG
1 TAGGCCCTTGGTATTGCAGGAGCCTCGGG
26983189 GGCCNNNNNN
Statistics
Matches: 426, Mismatches: 95, Indels: 36
0.76 0.17 0.06
Matches are distributed among these distances:
83 6 0.01
84 62 0.15
85 292 0.69
86 62 0.15
87 2 0.00
88 2 0.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.18
Consensus pattern (85 bp):
TAGGCCCTTGGTATTGCAGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
CTCGGGCACCATCGGCAACC
Found at i:26982804 original size:127 final size:128
Alignment explanation
Indices: 26982568--26983188 Score: 767
Period size: 127 Copynumber: 4.9 Consensus size: 128
26982558 GGTAGCATAG
*
26982568 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTGGTGCTAGGATGTGCAGGAGCCCC
1 GCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGCACCCTGGTGCTAGGATGTGCAGGAGCCCC
* * **
26982633 GGACACCATCGGCAAACTAAGCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGC-ACCTCG
66 GGACACCATCGGCAAACTAAGCCCTTGGTATTGCAGGAGCCTCGGGCACCATCGGCAAACTAA
**
26982695 GTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCCTGGTGCTAGGATGTGCAGGAGCCC
1 GCCCTT-GATCGTGCGGGAGCCTCGGGCACCATCGGCACCCTGGTGCTAGGATGTGCAGGAGCCC
* * **
26982759 CGGACACCATCGGCAAACTAAGCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGC-ACCTCG
65 CGGACACCATCGGCAAACTAAGCCCTTGGTATTGCAGGAGCCTCGGGCACCATCGGCAAACTAA
** * * * *
26982822 GTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGT-CCGAGAACC
1 GCCCTT-GATCGTGCGGGAGCCTCGGGCACCATCGGCACCCTGGTGCTAGGATGTGCAG-GAGCC
* * * * ** *
26982885 TCGCG-CACCATCGACAACCTAGGCCCTTGGTCGTGC-GAGAGGCTCGGGCACCATCGGCAAACT
64 CCG-GACACCATCGGCAAACTAAGCCCTTGGTATTGCAG-GAGCCTCGGGCACCATCGGCAAACT
26982948 AA
127 AA
* * * * * *
26982950 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGT-CCGAGAACCT
1 GCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGCACCCTGGTGCTAGGATGTGCAG-GAGCCC
* * * ** *
26983014 CGCG-CACCATCGACAACCTAGGCCCTTGGTCGTGC-GAGAGGCTCGGGCACCATCGGCAAACTA
65 CG-GACACCATCGGCAAACTAAGCCCTTGGTATTGCAG-GAGCCTCGGGCACCATCGGCAAACTA
26983077 A
128 A
*
26983078 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTGGTGCTAGGATGTGCAGGAGCCCC
1 GCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGCACCCTGGTGCTAGGATGTGCAGGAGCCCC
26983143 GGACACCATCGGCAAACTAAGCCCTTGGTATTGCAGGAGCCTCGGG
66 GGACACCATCGGCAAACTAAGCCCTTGGTATTGCAGGAGCCTCGGG
26983189 GGCCNNNNNN
Statistics
Matches: 453, Mismatches: 32, Indels: 17
0.90 0.06 0.03
Matches are distributed among these distances:
126 3 0.01
127 226 0.50
128 221 0.49
129 3 0.01
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.18
Consensus pattern (128 bp):
GCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGCACCCTGGTGCTAGGATGTGCAGGAGCCCC
GGACACCATCGGCAAACTAAGCCCTTGGTATTGCAGGAGCCTCGGGCACCATCGGCAAACTAA
Found at i:26992210 original size:42 final size:42
Alignment explanation
Indices: 26992106--26992313 Score: 169
Period size: 42 Copynumber: 4.9 Consensus size: 42
26992096 GAGCCTCCAT
*
26992106 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
26992149 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
26992192 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
26992234 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
26992276 CACCTCGGTGCTAT-GATGTGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGC-ATGGATGTGCGGGAGCC-TCGAGCACCA
26992314 AAGCTAAAGT
Statistics
Matches: 132, Mismatches: 22, Indels: 22
0.75 0.12 0.12
Matches are distributed among these distances:
41 14 0.11
42 64 0.48
43 43 0.33
44 11 0.08
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:26992855 original size:42 final size:42
Alignment explanation
Indices: 26992751--26993085 Score: 315
Period size: 42 Copynumber: 7.9 Consensus size: 42
26992741 GAGCCTCCAT
* *
26992751 CACCTTGGTGGCTCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* *
26992794 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* * *
26992837 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
26992879 CAAACTAGGCCCTTGGTTGTG-GGAAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGG
* * **
26992921 CACCTCGGTGCTAT-GATGTTCGGGAGCCTCG-GACACTGTCGG
1 CACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAG-CACCATCGG
* ** *
26992963 CAACCTAGGCCCTTGG-TCGTGCGGAAGCCTCGAGCACCATCGG
1 C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGG
26993006 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* * *
26993048 CACCTTGGTGCATGGATGAGCGGGAGCCTTGAGCACCA
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCA
26993086 AAGCTAAAGT
Statistics
Matches: 236, Mismatches: 41, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
40 1 0.00
41 13 0.06
42 139 0.59
43 72 0.31
44 11 0.05
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:26992931 original size:84 final size:85
Alignment explanation
Indices: 26992751--26993049 Score: 338
Period size: 85 Copynumber: 3.5 Consensus size: 85
26992741 GAGCCTCCAT
* * * * * * *** *
26992751 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTCAGCCACCATCGGTAACCTTGATGCTTGGATGTG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTTGTG
*
26992815 CGGGAGCCTCGAGCACCATCGG
64 CGGAAGCCTCGAGCACCATCGG
* *
26992837 CACCTTGGTGCATGGATGTGCGGGAGCATCGGACACCACCGGCAAACTAGGCCCTTGGTTGTG-G
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTTGTGCG
26992901 GAAGCCTCGGAG-ACCATCGG
66 GAAGCCTC-GAGCACCATCGG
* * ** * *
26992921 CACCTCGGTGCTAT-GATGTTCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGC
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTTGTGC
26992985 GGAAGCCTCGAGCACCATCGG
65 GGAAGCCTCGAGCACCATCGG
*
26993006 CACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGGCA
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGGA-CACCATCGGCA
26993050 CCTTGGTGCA
Statistics
Matches: 180, Mismatches: 26, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
84 74 0.41
85 96 0.53
86 10 0.06
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.20
Consensus pattern (85 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTTGTGCG
GAAGCCTCGAGCACCATCGG
Found at i:26992939 original size:645 final size:645
Alignment explanation
Indices: 26991709--26992949 Score: 2392
Period size: 645 Copynumber: 1.9 Consensus size: 645
26991699 GGAAACTAAA
* * *
26991709 AAAAAAAGTGTCCCTATTTCAGACACATGTACGTCTCCTGGTAGCGCATGGACCAAGTTTTTTTA
1 AAAAAAAGTGTCCCCATTTCAGACACATGAACGTCACCTGGTAGCGCATGGACCAAGTTTTTTTA
26991774 GCTCTTTAGGGGGGAGGAGACATTGAGCGAGCAGGGGTTATCCAGGGCAATGCCCACGCCCATCG
66 GCTCTTTAGGGGGGAGGAGACATTGAGCGAGCAGGGGTTATCCAGGGCAATGCCCACGCCCATCG
26991839 CATGCCCGGGCGTCAGTGCCCCCCACCACCGGTTAGGTTCCCGGCGGTGCTCCGACAATCCATCC
131 CATGCCCGGGCGTCAGTGCCCCCCACCACCGGTTAGGTTCCCGGCGGTGCTCCGACAATCCATCC
26991904 CGGTGAGGTATCCCAGAATATACGAAAACGATGAATCGAGTCCCTCCCCAATACCAAAGGTAGAA
196 CGGTGAGGTATCCCAGAATATACGAAAACGATGAATCGAGTCCCTCCCCAATACCAAAGGTAGAA
26991969 TTCGAATATCATTATATGTTCGGTACTCAACAATGAATGAGTTGTCCCGGTCCCTCCCCAATCCA
261 TTCGAATATCATTATATGTTCGGTACTCAACAATGAATGAGTTGTCCCGGTCCCTCCCCAATCCA
* *
26992034 AGGGTAGAATTCGGATATCCAACAATGGATGAATCCTTCCGGTCCCTCCGCTTTTGCAACAAGAG
326 AGGGTAGAATTCGGATAGCCAACAATGGATGAATCCTCCCGGTCCCTCCGCTTTTGCAACAAGAG
26992099 CCTCCATCACCTTGGTGGCTCGGATGTGTGGGAGCCTCAGCCACCATCGGTAACCTTGATGCTTG
391 CCTCCATCACCTTGGTGGCTCGGATGTGTGGGAGCCTCAGCCACCATCGGTAACCTTGATGCTTG
26992164 GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCGGACACC
456 GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCGGACACC
*
26992229 ACCGGCAAACTAGGCCCTTGGTTGTGGGGAGCCTCGGAGACCATCGGCACCTCGGTGCTATGATG
521 ACCGGCAAACTAGGCCCTTGGTTGTGGGAAGCCTCGGAGACCATCGGCACCTCGGTGCTATGATG
26992294 TGCGGGAGCCTTCAGCACCAAAGCTAAAGTTGGGCCCCTGTTGGTGCGGGAGCGTCGGGT
586 TGCGGGAGCCTTCAGCACCAAAGCTAAAGTTGGGCCCCTGTTGGTGCGGGAGCGTCGGGT
* *
26992354 AAAAAAAGTGTCCCCATTTCAGACACATGAATGTCACCTGGTAGCGCATTGACCAAGTTTTTTTA
1 AAAAAAAGTGTCCCCATTTCAGACACATGAACGTCACCTGGTAGCGCATGGACCAAGTTTTTTTA
26992419 GCTCTTTAGGGGGGAGGAGACATTGAGCGAGCAGGGGTTATCCAGGGCAATGCCCACGCCCATCG
66 GCTCTTTAGGGGGGAGGAGACATTGAGCGAGCAGGGGTTATCCAGGGCAATGCCCACGCCCATCG
26992484 CATGCCCGGGCGTCAGTGCCCCCCACCACCGGTTAGGTTCCCGGCGGTGCTCCGACAATCCATCC
131 CATGCCCGGGCGTCAGTGCCCCCCACCACCGGTTAGGTTCCCGGCGGTGCTCCGACAATCCATCC
*
26992549 CGGTGAGGTATCCCCGAATATACGAAAACGATGAATCGAGTCCCTCCCCAATACCAAAGGTAGAA
196 CGGTGAGGTATCCCAGAATATACGAAAACGATGAATCGAGTCCCTCCCCAATACCAAAGGTAGAA
26992614 TTCGAATATCATTATATGTTCGGTACTCAACAATGAATGAGTTGTCCCGGTCCCTCCCCAATCCA
261 TTCGAATATCATTATATGTTCGGTACTCAACAATGAATGAGTTGTCCCGGTCCCTCCCCAATCCA
26992679 AGGGTAGAATTCGGATAGCCAACAATGGATGAATCCTCCCGGTCCCTCCGCTTTTGCAACAAGAG
326 AGGGTAGAATTCGGATAGCCAACAATGGATGAATCCTCCCGGTCCCTCCGCTTTTGCAACAAGAG
26992744 CCTCCATCACCTTGGTGGCTCGGATGTGTGGGAGCCTCAGCCACCATCGGTAACCTTGATGCTTG
391 CCTCCATCACCTTGGTGGCTCGGATGTGTGGGAGCCTCAGCCACCATCGGTAACCTTGATGCTTG
26992809 GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCGGACACC
456 GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCGGACACC
26992874 ACCGGCAAACTAGGCCCTTGGTTGTGGGAAGCCTCGGAGACCATCGGCACCTCGGTGCTATGATG
521 ACCGGCAAACTAGGCCCTTGGTTGTGGGAAGCCTCGGAGACCATCGGCACCTCGGTGCTATGATG
*
26992939 TTCGGGAGCCT
586 TGCGGGAGCCT
26992950 CGGACACTGT
Statistics
Matches: 586, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
645 586 1.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (645 bp):
AAAAAAAGTGTCCCCATTTCAGACACATGAACGTCACCTGGTAGCGCATGGACCAAGTTTTTTTA
GCTCTTTAGGGGGGAGGAGACATTGAGCGAGCAGGGGTTATCCAGGGCAATGCCCACGCCCATCG
CATGCCCGGGCGTCAGTGCCCCCCACCACCGGTTAGGTTCCCGGCGGTGCTCCGACAATCCATCC
CGGTGAGGTATCCCAGAATATACGAAAACGATGAATCGAGTCCCTCCCCAATACCAAAGGTAGAA
TTCGAATATCATTATATGTTCGGTACTCAACAATGAATGAGTTGTCCCGGTCCCTCCCCAATCCA
AGGGTAGAATTCGGATAGCCAACAATGGATGAATCCTCCCGGTCCCTCCGCTTTTGCAACAAGAG
CCTCCATCACCTTGGTGGCTCGGATGTGTGGGAGCCTCAGCCACCATCGGTAACCTTGATGCTTG
GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCGGACACC
ACCGGCAAACTAGGCCCTTGGTTGTGGGAAGCCTCGGAGACCATCGGCACCTCGGTGCTATGATG
TGCGGGAGCCTTCAGCACCAAAGCTAAAGTTGGGCCCCTGTTGGTGCGGGAGCGTCGGGT
Found at i:26998429 original size:24 final size:24
Alignment explanation
Indices: 26998402--26998474 Score: 101
Period size: 24 Copynumber: 3.0 Consensus size: 24
26998392 CCGGTTAGGT
*
26998402 TCCCGGCGGTGCTCCGGCGATCCG
1 TCCCGGCGGTGCTCTGGCGATCCG
**
26998426 TCCCGGCGGTGCTCTGGTAATCCG
1 TCCCGGCGGTGCTCTGGCGATCCG
* *
26998450 TCCCGTCGGTGCTCTGGCGAACCG
1 TCCCGGCGGTGCTCTGGCGATCCG
26998474 T
1 T
26998475 TCTGATAGCA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.07, C:0.37, G:0.34, T:0.22
Consensus pattern (24 bp):
TCCCGGCGGTGCTCTGGCGATCCG
Found at i:26998634 original size:85 final size:84
Alignment explanation
Indices: 26998488--26998777 Score: 314
Period size: 85 Copynumber: 3.4 Consensus size: 84
26998478 GATAGCATAG
* * * *
26998488 GCCCTTGGTCGTGCGGGAGCCTCGGTCACCATCGGCACCTTGGTGCTAGGATGTGCAGGAGCCCC
1 GCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGATGTGCAGGAGCCCC
*
26998553 GGACACCATCGGCAAACTAA
65 GGACACCATCGGCAACCTAA
* * * *
26998573 GCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGTACCTCGGTGCTTCGATGTGCGGGAGCCCT
1 GCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTGCAGGAGCCC-
* *
26998638 TGG-CACCATCGGCAACCTAG
64 CGGACACCATCGGCAACCTAA
* * * * * *
26998658 GCACTTGGTCGTGCAGGAGCCTCAAGG-ACCATCGGCCCCTCGGTGCTATGACGTGCCGGAGCCT
1 GCCCTTGGTCGTGCAGGAGCCTC-GGGCACCATCGGCACCTCGGTGCT-TGATGTGCAGGAGCCC
** *
26998722 CGGACACTGTCGGCAACCTAC
64 CGGACACCATCGGCAACCTAA
* * *
26998743 GCCCATGGTCGTGCGGGAGCCTCGAGCACCATCGG
1 GCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGG
26998778 NNNNNNNNNN
Statistics
Matches: 170, Mismatches: 29, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
84 3 0.02
85 162 0.95
86 5 0.03
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (84 bp):
GCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGATGTGCAGGAGCCCCG
GACACCATCGGCAACCTAA
Found at i:26999243 original size:43 final size:43
Alignment explanation
Indices: 26999182--26999645 Score: 435
Period size: 43 Copynumber: 10.9 Consensus size: 43
26999172 NNNNNNNNNN
**
26999182 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAG
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
* *
26999225 GCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAG
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
** * * *
26999267 GTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAG
1 GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
* * * *
26999310 GCCCTTTGTCGTGCGGGAGCCTCGTGCACCATCGAC-ACCTTG
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
** * *
26999352 GTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAG
1 GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
* * * **
26999395 ACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAATAG
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
* * *
26999438 GCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-ACCTCG
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
*
26999480 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTG
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
** * * *
26999522 GTGGCTCGGAT-GTGCGGGAGCCTCGGGCAGCATCGGC-ACCTCG
1 G-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
** * ** * *
26999565 GTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGCAA-CTTG
1 G-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
**
26999608 GTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCA
1 GCCCTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGCA
26999646 CCTTGGTGCC
Statistics
Matches: 348, Mismatches: 61, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
42 131 0.38
43 215 0.62
44 2 0.01
ACGTcount: A:0.15, C:0.32, G:0.36, T:0.18
Consensus pattern (43 bp):
GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
Found at i:26999340 original size:85 final size:84
Alignment explanation
Indices: 26999192--26999645 Score: 518
Period size: 85 Copynumber: 5.3 Consensus size: 84
26999182 GCCCTTGGTC
**
26999192 GTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCAT
* * *
26999257 CGGCTCCTAGGTGCTGGGAT
65 CGGCACCTTGGTGCTTGGAT
* * *
26999277 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTTGTCGTGCGGGAGCCTCGTGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCAT
*
26999342 CGACACCTTGGTGCTTGGAT
65 CGGCACCTTGGTGCTTGGAT
* * * * *
26999362 GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
** * **
26999427 CGGCAAAATAGGCCCTTGG-T
65 CGGC-ACCTTGGTGCTTGGAT
* * *
26999447 CGTGCGGGGGCCTCGGCCACCATCGGC-ACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCA
*
26999511 TCGGCACCTTGGTGGCTCGGAT
64 TCGGCACCTTGGT-GCTTGGAT
* * ** * **
26999533 GTGCGGGAGCCTCGGGCAGCATCGGC-ACCTCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGG-CACCA
*
26999597 TCGGCAACTTGGTGCTTGGAT
64 TCGGCACCTTGGTGCTTGGAT
26999618 GTGCGGGAGCCTCGGGCACCCATCGGCA
1 GTGCGGGAGCCTCGGGCA-CCATCGGCA
26999646 CCTTGGTGCC
Statistics
Matches: 313, Mismatches: 46, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
84 4 0.01
85 234 0.75
86 75 0.24
ACGTcount: A:0.15, C:0.31, G:0.36, T:0.18
Consensus pattern (84 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
GGCACCTTGGTGCTTGGAT
Found at i:26999537 original size:128 final size:127
Alignment explanation
Indices: 26999182--26999668 Score: 518
Period size: 128 Copynumber: 3.8 Consensus size: 127
26999172 NNNNNNNNNN
* *
26999182 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGGGAGCC
1 GCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGC-AACTTGGCCCTTGGAT-GTGCGGGAGCC
* * * *
26999246 TCGGCCACCATCGGCTCCTAGGTG-CTGGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAG
63 TCGGGCACCATCGGCACCTTGGTGCCTGGGATGTGCGGGAGCCTCGGGCACCATCGGCAAACTAG
* * * ** * *
26999310 GCCCTTTGTCGTGCGGGAGCCTCGTGCACCATCGACACCTTGGTGCTTGGATGTGCCGGAACCTC
1 GCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCGGCAACTTGGCCCTTGGATGTGCGGGAGCCTC
* ** * * * *
26999375 GGGCACCATCGGCAACC-TAGACCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAAATAG
65 GGGCACCATCGGC-ACCTTGGTGCCTGGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAACTAG
* * *
26999438 GCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGCACCTCGGCCCTTGG-TCGTGCGGGAGCCT
1 GCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACTTGGCCCTTGGAT-GTGCGGGAGCCT
* * * * *
26999502 CGGGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGGGCAGCATCGGC-ACCTCG
64 CGGGCACCATCGGCACCTTGGTGCCTGGGATGTGCGGGAGCCTCGGGCACCATCGGCAAACTAG
** * ** **
26999565 GTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCT
1 G-CCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACTTGGCCCTTGGATGTGCGGGAGCCT
26999630 CGGGCACCCATCGGCACCTTGGTGCCTGGGATGTGCGGG
64 CGGGCA-CCATCGGCACCTTGGTGCCTGGGATGTGCGGG
26999669 CTAAAGAAGA
Statistics
Matches: 295, Mismatches: 52, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
127 44 0.15
128 219 0.74
129 32 0.11
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (127 bp):
GCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACTTGGCCCTTGGATGTGCGGGAGCCTCG
GGCACCATCGGCACCTTGGTGCCTGGGATGTGCGGGAGCCTCGGGCACCATCGGCAAACTAG
Found at i:27005804 original size:43 final size:43
Alignment explanation
Indices: 27005743--27005972 Score: 315
Period size: 43 Copynumber: 5.4 Consensus size: 43
27005733 TCCAGTAGCA
*
27005743 TAGGCCCTTGGTCCTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
27005786 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
27005828 TTGGTGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
27005871 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
27005913 TTGGTGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
27005956 TAGGCCCTTGGTCGTGC
1 TAGGCCCTTGGTCGTGC
27005973 CAAAGTTTAG
Statistics
Matches: 161, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
42 72 0.45
43 89 0.55
ACGTcount: A:0.14, C:0.33, G:0.34, T:0.19
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:27005892 original size:85 final size:85
Alignment explanation
Indices: 27005757--27005972 Score: 423
Period size: 85 Copynumber: 2.5 Consensus size: 85
27005747 CCCTTGGTCC
*
27005757 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
1 TGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
27005822 GGCACCTTGGTGCTTGGATG
66 GGCACCTTGGTGCTTGGATG
27005842 TGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
1 TGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
27005907 GGCACCTTGGTGCTTGGATG
66 GGCACCTTGGTGCTTGGATG
27005927 TGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
1 TGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
27005973 CAAAGTTTAG
Statistics
Matches: 130, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 130 1.00
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (85 bp):
TGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
GGCACCTTGGTGCTTGGATG
Found at i:27007534 original size:29 final size:28
Alignment explanation
Indices: 27007411--27007542 Score: 102
Period size: 30 Copynumber: 4.5 Consensus size: 28
27007401 TGGTTAACCC
* ** *
27007411 ATCCCTTTCCATAATTTGATAACCGAAGTT
1 ATCCCTTTTCATAA-TTGATAGTCGAA-CT
* * *
27007441 ATCCCTTTTCATAGTTCAACAGTCGAAGCT
1 ATCCCTTTTCATAATT-GATAGTCGAA-CT
* * *
27007471 ATCCCTTTTCATAATTTGATGGTCGTCACC
1 ATCCCTTTTCATAA-TTGATAGTCG-AACT
27007501 ATCCCTTTTCATAATTGATAGTCGAATCT
1 ATCCCTTTTCATAATTGATAGTCGAA-CT
*
27007530 TTCCCTTTTCATA
1 ATCCCTTTTCATA
27007543 GATCTATGAT
Statistics
Matches: 81, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
28 1 0.01
29 24 0.30
30 53 0.65
31 3 0.04
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.39
Consensus pattern (28 bp):
ATCCCTTTTCATAATTGATAGTCGAACT
Found at i:27008697 original size:341 final size:341
Alignment explanation
Indices: 27008070--27008756 Score: 1302
Period size: 341 Copynumber: 2.0 Consensus size: 341
27008060 TTTTCTACCA
27008070 TAAAACATCAAAACAACATAATATCATTCATGGAAAAACCCTAACCTTTTAATAATTTTACAAAT
1 TAAAACATCAAAACAACATAATATCATTCATGGAAAAACCCTAACCTTTTAATAATTTTACAAAT
27008135 TAGTCCCCGGGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGG
66 TAGTCCCCGGGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGG
*
27008200 ATAAAAAATTACTTACTTGCACAAGGTAGCCTAGCCGAACCTTCAAAGCACAATATGGTGTTTTC
131 ATAAAAAATTACTTACTTGCACAAGGTAGCCTAGCCAAACCTTCAAAGCACAATATGGTGTTTTC
*
27008265 TTTCTCCAAAAATCGGTGAAAAAAAGTGAGAAAGTTTATACCAAAAAATTTTGTTTTGTTTTACT
196 TTTCTCCAAAAATCGGTGAAAAAAAGTGAGAAAGTTGATACCAAAAAATTTTGTTTTGTTTTACT
*
27008330 TAATTAATTAATTTACTTATTTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCAT
261 TAATTAATTAATTTACTTAATTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCAT
27008395 AAATGTCCACTCAAAT
326 AAATGTCCACTCAAAT
* *
27008411 TAAAACATCAAAGCAACATAATATCATTCATGGAAAAACCCTAACCTTTTAATACTTTTACAAAT
1 TAAAACATCAAAACAACATAATATCATTCATGGAAAAACCCTAACCTTTTAATAATTTTACAAAT
*
27008476 TAGTCCCCGTGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGG
66 TAGTCCCCGGGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGG
*
27008541 ATAAAAAATTACTTACTTGCACAAGGTAGCCTAGCTAAACCTTCAAAGCACAATATGGTGTTTTC
131 ATAAAAAATTACTTACTTGCACAAGGTAGCCTAGCCAAACCTTCAAAGCACAATATGGTGTTTTC
*
27008606 TTTCTCCAAAAATCGGTGAAACAAAGTGAGAAAGTTGATACCAAAAAATTTTGTTTTGTTTTACT
196 TTTCTCCAAAAATCGGTGAAAAAAAGTGAGAAAGTTGATACCAAAAAATTTTGTTTTGTTTTACT
27008671 TAATTAATTAATTTACTTAATTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCAT
261 TAATTAATTAATTTACTTAATTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCAT
27008736 AAATGTCCACTCAAAT
326 AAATGTCCACTCAAAT
27008752 TAAAA
1 TAAAA
27008757 ATGGTCTATT
Statistics
Matches: 338, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
341 338 1.00
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (341 bp):
TAAAACATCAAAACAACATAATATCATTCATGGAAAAACCCTAACCTTTTAATAATTTTACAAAT
TAGTCCCCGGGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGG
ATAAAAAATTACTTACTTGCACAAGGTAGCCTAGCCAAACCTTCAAAGCACAATATGGTGTTTTC
TTTCTCCAAAAATCGGTGAAAAAAAGTGAGAAAGTTGATACCAAAAAATTTTGTTTTGTTTTACT
TAATTAATTAATTTACTTAATTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCAT
AAATGTCCACTCAAAT
Found at i:27008704 original size:12 final size:12
Alignment explanation
Indices: 27008687--27008711 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
27008677 ATTAATTTAC
27008687 TTAATTAACCTT
1 TTAATTAACCTT
27008699 TTAATTAACCTT
1 TTAATTAACCTT
27008711 T
1 T
27008712 GAAAAACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (12 bp):
TTAATTAACCTT
Found at i:27010330 original size:56 final size:50
Alignment explanation
Indices: 27010234--27010468 Score: 254
Period size: 50 Copynumber: 4.6 Consensus size: 50
27010224 ATTTGGGTAA
* * *
27010234 AGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCCTTGAGGTCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC--GA-G--ATG
* * *
27010290 AGAGGTCCTATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
27010340 AGAGGTCCCGTGTAAGACCATGTCTGGGACATGGCGTTGGTACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * *
27010390 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * *
27010440 AGAACTCCTATGTAAGACCATATCTGGGA
1 AGAGGTCCCATGTAAGACCATGTCTGGGA
27010469 TATAGTATTG
Statistics
Matches: 157, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
50 113 0.72
52 1 0.01
53 2 0.01
55 2 0.01
56 39 0.25
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:27015855 original size:47 final size:47
Alignment explanation
Indices: 27015786--27015912 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 47
27015776 ATTGCATTAT
* * * * * * * *
27015786 TGGCAGCTTGTCTACATATATTGGCATTTTATTTGCATTATCGTTAC
1 TGGCAGCTTGTCTGCATATATTGACAATTTATCTACATTACCATCAC
* *
27015833 TGGCAGCTTGTCTGTATATATTGACAATTTATCTACATTACCATCAT
1 TGGCAGCTTGTCTGCATATATTGACAATTTATCTACATTACCATCAC
* *
27015880 TGGCAGCTTGTTTGCATATATTGAGAATTTATC
1 TGGCAGCTTGTCTGCATATATTGACAATTTATC
27015913 CACACTACTG
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.43
Consensus pattern (47 bp):
TGGCAGCTTGTCTGCATATATTGACAATTTATCTACATTACCATCAC
Found at i:27017776 original size:30 final size:29
Alignment explanation
Indices: 27017716--27017798 Score: 123
Period size: 30 Copynumber: 2.9 Consensus size: 29
27017706 CAAAAACTTA
* * *
27017716 TATTCGTCATAATGAA-GTTTTAGCTTTT
1 TATTCGCCATAATGAATTTTTTGGCTTTT
27017744 TATTCGCCATAATGAATTTTTTGGCTTTTT
1 TATTCGCCATAATGAATTTTTTGGC-TTTT
27017774 TATTCGCCATAATGAATTTTTTGGC
1 TATTCGCCATAATGAATTTTTTGGC
27017799 ACTCCATCTT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
28 15 0.30
29 6 0.12
30 29 0.58
ACGTcount: A:0.23, C:0.13, G:0.14, T:0.49
Consensus pattern (29 bp):
TATTCGCCATAATGAATTTTTTGGCTTTT
Found at i:27018026 original size:20 final size:20
Alignment explanation
Indices: 27017988--27018026 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
27017978 AAATAAAAAA
* *
27017988 ATATTTTTTCATTACTTTAT
1 ATATTTTTTAATAACTTTAT
*
27018008 ATATTTTTTAATAATTTTA
1 ATATTTTTTAATAACTTTA
27018027 ATAATTTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (20 bp):
ATATTTTTTAATAACTTTAT
Found at i:27025221 original size:21 final size:21
Alignment explanation
Indices: 27025203--27025243 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
27025193 AACAAAATAG
27025203 TAAAACATAATACTGAAATGA
1 TAAAACATAATACTGAAATGA
* *
27025224 TAGAACATAATAGTGAAATG
1 TAAAACATAATACTGAAATG
27025244 GTAGCAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.54, C:0.07, G:0.15, T:0.24
Consensus pattern (21 bp):
TAAAACATAATACTGAAATGA
Found at i:27025290 original size:20 final size:21
Alignment explanation
Indices: 27025267--27025314 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
27025257 AAAAAAAAAG
27025267 AAAATAGCA-AAAAACAGTAA
1 AAAATAGCAGAAAAACAGTAA
* *
27025287 AAAA-AGCAGGAAAATAGTAA
1 AAAATAGCAGAAAAACAGTAA
27025307 AAAGATAG
1 AAA-ATAG
27025315 TAGTTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 4 0.17
20 16 0.70
21 1 0.04
22 2 0.09
ACGTcount: A:0.67, C:0.06, G:0.17, T:0.10
Consensus pattern (21 bp):
AAAATAGCAGAAAAACAGTAA
Found at i:27025300 original size:30 final size:28
Alignment explanation
Indices: 27025249--27025309 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
27025239 AAATGGTAGC
*
27025249 AAAATAGTAAAAAAAAAGAAAATAGCAA
1 AAAACAGTAAAAAAAAAGAAAATAGCAA
* *
27025277 AAAACAGTAAAAAAAGCAGGAAAATAGTAA
1 AAAACAGTAAAAAAA--AAGAAAATAGCAA
27025307 AAA
1 AAA
27025310 GATAGTAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 14 0.50
30 14 0.50
ACGTcount: A:0.72, C:0.05, G:0.13, T:0.10
Consensus pattern (28 bp):
AAAACAGTAAAAAAAAAGAAAATAGCAA
Found at i:27030163 original size:13 final size:13
Alignment explanation
Indices: 27030145--27030174 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
27030135 CAATAAAGAG
*
27030145 ATATATAATTTAT
1 ATATATAAGTTAT
27030158 ATATATAAGTTAT
1 ATATATAAGTTAT
27030171 ATAT
1 ATAT
27030175 GTTATATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
ATATATAAGTTAT
Found at i:27037696 original size:21 final size:20
Alignment explanation
Indices: 27037672--27037720 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
27037662 TAAATTTAAC
*
27037672 TCAATTTAATACAATTCATAT
1 TCAATTTAATACAATCCA-AT
* *
27037693 TCAATTCAATCCAATCCAAT
1 TCAATTTAATACAATCCAAT
27037713 TCATATTT
1 TCA-ATTT
27037721 TAGGCAATAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (20 bp):
TCAATTTAATACAATCCAAT
Found at i:27039244 original size:27 final size:27
Alignment explanation
Indices: 27039214--27039366 Score: 144
Period size: 27 Copynumber: 5.7 Consensus size: 27
27039204 TCAGAACATG
* **
27039214 CCACAAAGGCTATTCTTTTAGAGTATT
1 CCACAAAGGCTATTCTTTCAGAGTACA
* * * **
27039241 CCACAAATGTTATTCTTTTAGAGTATG
1 CCACAAAGGCTATTCTTTCAGAGTACA
* * *
27039268 CCACAAAAGCTATTCTTTCATAGTACG
1 CCACAAAGGCTATTCTTTCAGAGTACA
* ** *
27039295 CCATAAAGATTATTCTTTCATAGTACA
1 CCACAAAGGCTATTCTTTCAGAGTACA
* *
27039322 CCACAAAGGTTATTCTTTCAGAGAACA
1 CCACAAAGGCTATTCTTTCAGAGTACA
*
27039349 CCATAAAGGCTATTCTTT
1 CCACAAAGGCTATTCTTT
27039367 TAAAATACGC
Statistics
Matches: 107, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (27 bp):
CCACAAAGGCTATTCTTTCAGAGTACA
Found at i:27039353 original size:54 final size:53
Alignment explanation
Indices: 27039213--27039389 Score: 165
Period size: 54 Copynumber: 3.3 Consensus size: 53
27039203 ATCAGAACAT
* * ** * * *
27039213 GCCACAAAGGCTATTCTTTTAGAGTATTCCACAAATGTTATTCTTTTAGAGTAT
1 GCCACAAAAGCTATTCTTTCAGAGTACACCATAAA-GTTATTCTTTTAAAGTAC
* * * *
27039267 GCCACAAAAGCTATTCTTTCATAGTACGCCATAAAGATTATTCTTTCATAGTAC
1 GCCACAAAAGCTATTCTTTCAGAGTACACCATAAAG-TTATTCTTTTAAAGTAC
* * * * * *
27039321 ACCACAAAGGTTATTCTTTCAGAGAACACCATAAAGGCTATTCTTTTAAAATAC
1 GCCACAAAAGCTATTCTTTCAGAGTACACCATAAA-GTTATTCTTTTAAAGTAC
*
27039375 GCCACAAAAGTTATT
1 GCCACAAAAGCTATT
27039390 TCTTAGCTGT
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
53 1 0.01
54 98 0.98
55 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33
Consensus pattern (53 bp):
GCCACAAAAGCTATTCTTTCAGAGTACACCATAAAGTTATTCTTTTAAAGTAC
Found at i:27039389 original size:27 final size:27
Alignment explanation
Indices: 27039213--27039389 Score: 122
Period size: 27 Copynumber: 6.6 Consensus size: 27
27039203 ATCAGAACAT
* * * * *
27039213 GCCACAAAGGCTATTCTTTTAGAGTAT
1 GCCACAAAAGTTATTCTTTCAAAGTAC
* * * * *
27039240 TCCACAAATGTTATTCTTTTAGAGTAT
1 GCCACAAAAGTTATTCTTTCAAAGTAC
* *
27039267 GCCACAAAAGCTATTCTTTCATAGTAC
1 GCCACAAAAGTTATTCTTTCAAAGTAC
* *
27039294 GCCA-TAAAGATTATTCTTTCATAGTAC
1 GCCACAAAAG-TTATTCTTTCAAAGTAC
* * * *
27039321 ACCACAAAGGTTATTCTTTCAGAGAAC
1 GCCACAAAAGTTATTCTTTCAAAGTAC
* * * * * *
27039348 ACCATAAAGGCTATTCTTTTAAAATAC
1 GCCACAAAAGTTATTCTTTCAAAGTAC
27039375 GCCACAAAAGTTATT
1 GCCACAAAAGTTATT
27039390 TCTTAGCTGT
Statistics
Matches: 122, Mismatches: 26, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 4 0.03
27 115 0.94
28 3 0.02
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33
Consensus pattern (27 bp):
GCCACAAAAGTTATTCTTTCAAAGTAC
Found at i:27039389 original size:81 final size:81
Alignment explanation
Indices: 27039213--27039389 Score: 185
Period size: 81 Copynumber: 2.2 Consensus size: 81
27039203 ATCAGAACAT
* * * ** * * * **
27039213 GCCACAAAGGCTATTCTTTTAGAGTATTCCACAAATGTTATTCTTTTAGAGTATGCCACAAAAGC
1 GCCACAAAAGTTATTCTTTCAGAGTACACCACAAAGGTTATTCTTTCAGAGAACACCACAAAAGC
* *
27039278 TATTCTTTCATAGTAC
66 TATTCTTTCAAAATAC
* * * *
27039294 GCCA-TAAAGATTATTCTTTCATAGTACACCACAAAGGTTATTCTTTCAGAGAACACCATAAAGG
1 GCCACAAAAG-TTATTCTTTCAGAGTACACCACAAAGGTTATTCTTTCAGAGAACACCACAAAAG
*
27039358 CTATTCTTTTAAAATAC
65 CTATTCTTTCAAAATAC
27039375 GCCACAAAAGTTATT
1 GCCACAAAAGTTATT
27039390 TCTTAGCTGT
Statistics
Matches: 76, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
80 3 0.04
81 69 0.91
82 4 0.05
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33
Consensus pattern (81 bp):
GCCACAAAAGTTATTCTTTCAGAGTACACCACAAAGGTTATTCTTTCAGAGAACACCACAAAAGC
TATTCTTTCAAAATAC
Found at i:27040860 original size:27 final size:27
Alignment explanation
Indices: 27040801--27040860 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
27040791 CAACCAATAG
*
27040801 AGTCTGTCGAGATATTAAAAGCGAGGC
1 AGTCTGTCGAGATAGTAAAAGCGAGGC
* *
27040828 AATCTGTCGAGATAGTAAACA-CGAGGT
1 AGTCTGTCGAGATAGTAAA-AGCGAGGC
27040855 AGTCTG
1 AGTCTG
27040861 CTAGAATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.23
Consensus pattern (27 bp):
AGTCTGTCGAGATAGTAAAAGCGAGGC
Found at i:27045043 original size:23 final size:23
Alignment explanation
Indices: 27045013--27045084 Score: 135
Period size: 23 Copynumber: 3.1 Consensus size: 23
27045003 CCTAGCCTCT
27045013 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
27045036 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
27045059 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
27045082 TTT
1 TTT
27045085 TTCACTTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:27047036 original size:4 final size:4
Alignment explanation
Indices: 27047029--27047075 Score: 73
Period size: 4 Copynumber: 12.5 Consensus size: 4
27047019 TCAGTCACCC
27047029 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTC- TT-T TTCT TTC- TTCT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT
27047074 TT
1 TT
27047076 TTATTTTACA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
3 7 0.17
4 33 0.82
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTCT
Found at i:27053940 original size:21 final size:20
Alignment explanation
Indices: 27053901--27053940 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
27053891 ATCATATAAA
*
27053901 TTAAAAATTACAATTATTTT
1 TTAAAAATTACAATGATTTT
*
27053921 TTAAAAATTTATAATGATTT
1 TTAAAAA-TTACAATGATTT
27053941 ATCAAAACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (20 bp):
TTAAAAATTACAATGATTTT
Found at i:27056092 original size:21 final size:21
Alignment explanation
Indices: 27056059--27056109 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
27056049 TAAATGTCCT
* *
27056059 TAGATATAATAAAAATGAAAAA
1 TAGATAT-TTAAAAAAGAAAAA
*
27056081 TAGATATTTAAAAAAGATAAA
1 TAGATATTTAAAAAAGAAAAA
*
27056102 CAGATATT
1 TAGATATT
27056110 AATTTTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.61, C:0.02, G:0.10, T:0.27
Consensus pattern (21 bp):
TAGATATTTAAAAAAGAAAAA
Found at i:27057342 original size:30 final size:30
Alignment explanation
Indices: 27057308--27057370 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
27057298 ACTTAACAAG
27057308 CAAATGCATATAAAATAATAACAAAATTAA
1 CAAATGCATATAAAATAATAACAAAATTAA
* *
27057338 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCATATAAAATAATAACAAAATTAA
27057368 CAA
1 CAA
27057371 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.60, C:0.13, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCATATAAAATAATAACAAAATTAA
Found at i:27060095 original size:26 final size:26
Alignment explanation
Indices: 27060066--27060117 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27060056 ATTTTTTTTA
27060066 ATAA-ATTTAGAATTTTTTAAAAATAT
1 ATAAGATTTAG-ATTTTTTAAAAATAT
* *
27060092 ATAAGTTTTAGATTTTTTATAAATAT
1 ATAAGATTTAGATTTTTTAAAAATAT
27060118 TTTGAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (26 bp):
ATAAGATTTAGATTTTTTAAAAATAT
Found at i:27060606 original size:12 final size:12
Alignment explanation
Indices: 27060589--27060613 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
27060579 TAGGTCACTG
27060589 TTTCTTTTCTTT
1 TTTCTTTTCTTT
27060601 TTTCTTTTCTTT
1 TTTCTTTTCTTT
27060613 T
1 T
27060614 CCCGATTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTCTTTTCTTT
Found at i:27060781 original size:38 final size:37
Alignment explanation
Indices: 27060724--27060797 Score: 139
Period size: 38 Copynumber: 2.0 Consensus size: 37
27060714 AATACTTTTT
27060724 TTTTAATTTTTTTAATTTTAAAATATTTTTAAAATAC
1 TTTTAATTTTTTTAATTTTAAAATATTTTTAAAATAC
27060761 TTTTAATTTTTTTTAATTTTAAAATATTTTTAAAATA
1 TTTTAA-TTTTTTTAATTTTAAAATATTTTTAAAATA
27060798 AAATTTTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 6 0.17
38 30 0.83
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (37 bp):
TTTTAATTTTTTTAATTTTAAAATATTTTTAAAATAC
Found at i:27060812 original size:38 final size:37
Alignment explanation
Indices: 27060724--27060835 Score: 112
Period size: 38 Copynumber: 3.1 Consensus size: 37
27060714 AATACTTTTT
*
27060724 TTTTAATT-TTTTTAATTTTAAAATATTTTTAAAATAC
1 TTTT-ATTATTTTTAATTTTAAAATATTTTTAAAATAA
*
27060761 TTTTAATTTTTTTTAATTTTAAAATATTTTTAAAATAAAA
1 TTTT-ATTATTTTTAATTTTAAAATATTTTTAAAAT--AA
*
27060801 TTTT-TTATTTTT-GTTTT---A-ATTTTTAAAATAA
1 TTTTATTATTTTTAATTTTAAAATATTTTTAAAATAA
27060832 TTTT
1 TTTT
27060836 TTGGTATTTA
Statistics
Matches: 69, Mismatches: 3, Indels: 12
0.82 0.04 0.14
Matches are distributed among these distances:
31 6 0.09
33 11 0.16
34 1 0.01
37 12 0.17
38 34 0.49
40 5 0.07
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (37 bp):
TTTTATTATTTTTAATTTTAAAATATTTTTAAAATAA
Found at i:27072704 original size:3 final size:3
Alignment explanation
Indices: 27072696--27072731 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
27072686 AATATTTTTG
27072696 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
27072732 CATTTTCAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:27073189 original size:36 final size:39
Alignment explanation
Indices: 27073126--27073198 Score: 91
Period size: 37 Copynumber: 1.9 Consensus size: 39
27073116 ACAATATCCA
*
27073126 AACAATAACAACAGAAAAGTGGTAAT-AACAA-AATGGC
1 AACAATAACAACAGAAAAGTGGAAATAAACAACAATGGC
*
27073163 AACAA-AACAACATTAAAA-TGGAAATAAACAACAATG
1 AACAATAACAACA-GAAAAGTGGAAATAAACAACAATG
27073199 AAAATTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
36 13 0.42
37 14 0.45
38 4 0.13
ACGTcount: A:0.60, C:0.14, G:0.12, T:0.14
Consensus pattern (39 bp):
AACAATAACAACAGAAAAGTGGAAATAAACAACAATGGC
Found at i:27074139 original size:20 final size:20
Alignment explanation
Indices: 27074114--27074158 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
27074104 ATTTATTTAT
* *
27074114 TAAAATAATATTTTTATAAA
1 TAAAATAATAATCTTATAAA
*
27074134 TAAAATAATAATCTTATACA
1 TAAAATAATAATCTTATAAA
27074154 TAAAA
1 TAAAA
27074159 CAATTTAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (20 bp):
TAAAATAATAATCTTATAAA
Found at i:27074632 original size:30 final size:30
Alignment explanation
Indices: 27074596--27074655 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
27074586 CTTATTTTAG
27074596 TTTCAATGTTTGAATGCCTCGAGACAATGA
1 TTTCAATGTTTGAATGCCTCGAGACAATGA
27074626 TTTCAATGTTTGAATGCCTCGAGACAATGA
1 TTTCAATGTTTGAATGCCTCGAGACAATGA
27074656 GTTCTTGTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (30 bp):
TTTCAATGTTTGAATGCCTCGAGACAATGA
Found at i:27079589 original size:15 final size:15
Alignment explanation
Indices: 27079565--27079596 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
27079555 ATTATTGACT
27079565 AAAATAAAAAAATTA
1 AAAATAAAAAAATTA
*
27079580 AAAATTAAAAAATTA
1 AAAATAAAAAAATTA
27079595 AA
1 AA
27079597 TAAAAATACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (15 bp):
AAAATAAAAAAATTA
Found at i:27083412 original size:15 final size:16
Alignment explanation
Indices: 27083389--27083432 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
27083379 GGTTAGGGTT
*
27083389 TTTAATATTTTT-AGG
1 TTTAGTATTTTTAAGG
27083404 TTTAGTATTTTTTAAGG
1 TTTAGTA-TTTTTAAGG
*
27083421 TTTAGGATTTTT
1 TTTAGTATTTTT
27083433 TGGGTATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.24
16 10 0.40
17 9 0.36
ACGTcount: A:0.23, C:0.00, G:0.16, T:0.61
Consensus pattern (16 bp):
TTTAGTATTTTTAAGG
Found at i:27083417 original size:16 final size:17
Alignment explanation
Indices: 27083396--27083433 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
27083386 GTTTTTAATA
*
27083396 TTTTT-AGGTTTAGTAT
1 TTTTTAAGGTTTAGGAT
27083412 TTTTTAAGGTTTAGGAT
1 TTTTTAAGGTTTAGGAT
27083429 TTTTT
1 TTTTT
27083434 GGGTATTGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.63
Consensus pattern (17 bp):
TTTTTAAGGTTTAGGAT
Found at i:27092745 original size:21 final size:21
Alignment explanation
Indices: 27092721--27092764 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
27092711 GGTAAGGGGT
27092721 GTTGTATTTAGTGGTAGCAGA
1 GTTGTATTTAGTGGTAGCAGA
*
27092742 GTTGTATTTAGTGGTATCAGA
1 GTTGTATTTAGTGGTAGCAGA
27092763 GT
1 GT
27092765 AGGTTTAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.05, G:0.32, T:0.41
Consensus pattern (21 bp):
GTTGTATTTAGTGGTAGCAGA
Found at i:27104386 original size:66 final size:66
Alignment explanation
Indices: 27104280--27104438 Score: 228
Period size: 66 Copynumber: 2.4 Consensus size: 66
27104270 AGCCTAGCAC
* * * * *
27104280 GGCCTAGCAGACGGCCGTGTGGCTTGGACGTGTGTCACAAGTCAGTATACTCACCATTTTTTACA
1 GGCCTAGCAAACGGGCATGTGGCTTGGACATGTGTCACAAGTCAGTATACTCACCATTTTTGACA
27104345 T
66 T
* * * *
27104346 GGCCTAGCACACGGGCATGTGGCTTGGCCATGTGTCACAAGTTAGTATGCTCACCATTTTTGACA
1 GGCCTAGCAAACGGGCATGTGGCTTGGACATGTGTCACAAGTCAGTATACTCACCATTTTTGACA
27104411 T
66 T
*
27104412 GGCCTAGCAAACGGGCATGCGGCTTGG
1 GGCCTAGCAAACGGGCATGTGGCTTGG
27104439 TCGTGTGACC
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 83 1.00
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (66 bp):
GGCCTAGCAAACGGGCATGTGGCTTGGACATGTGTCACAAGTCAGTATACTCACCATTTTTGACA
T
Found at i:27104868 original size:51 final size:51
Alignment explanation
Indices: 27104809--27104910 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
27104799 CGGGTTAGGG
27104809 GTGTTACATTTATTAGTATCAGAGCTACAGTTTAGTCGATTCTCGGACTAA
1 GTGTTACATTTATTAGTATCAGAGCTACAGTTTAGTCGATTCTCGGACTAA
27104860 GTGTTACATTTATTAGTATCAGAGCTACAGTTTAGTCGATTCTCGGACTAA
1 GTGTTACATTTATTAGTATCAGAGCTACAGTTTAGTCGATTCTCGGACTAA
27104911 CGTAGCGTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (51 bp):
GTGTTACATTTATTAGTATCAGAGCTACAGTTTAGTCGATTCTCGGACTAA
Found at i:27110807 original size:34 final size:35
Alignment explanation
Indices: 27110758--27110824 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
27110748 CAGTAAAATG
* *
27110758 TTTTCCGTAAGATGATTT-TTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTATTGGAAAATATTTTAC
* *
27110792 TTTTCTGTAAAATGATTTATTGTAAAATATTTT
1 TTTTCCGTAAAATGATTTATTGGAAAATATTTT
27110825 TTGGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.30, C:0.06, G:0.13, T:0.51
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTATTGGAAAATATTTTAC
Found at i:27115575 original size:34 final size:35
Alignment explanation
Indices: 27115526--27115592 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
27115516 CAGTAAAATG
* *
27115526 TTTTCCGTAAGATGATTT-TTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTATTGGAAAATATTTTAC
* *
27115560 TTTTCTGTAAAATGATTTATTGTAAAATATTTT
1 TTTTCCGTAAAATGATTTATTGGAAAATATTTT
27115593 TTGGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.30, C:0.06, G:0.13, T:0.51
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTATTGGAAAATATTTTAC
Found at i:27117624 original size:831 final size:831
Alignment explanation
Indices: 27116023--27117685 Score: 3326
Period size: 831 Copynumber: 2.0 Consensus size: 831
27116013 TTCTATGGTT
27116023 TTTACTTTTAACTAAAAAAGCTTTGGCCTCGGATTCATGACTCACTAGATAATCAAACACAGAAC
1 TTTACTTTTAACTAAAAAAGCTTTGGCCTCGGATTCATGACTCACTAGATAATCAAACACAGAAC
27116088 ACAAGACCACTTTCACTGCTGCATCATATGTCGCTCTATCACATGTGATCATTTTCATGTTATCA
66 ACAAGACCACTTTCACTGCTGCATCATATGTCGCTCTATCACATGTGATCATTTTCATGTTATCA
27116153 TCCCATCCAAAACCAGTTTCACCTCGAATTTTACATATAATCTGCCACTGGTTTTTTACTGTCCT
131 TCCCATCCAAAACCAGTTTCACCTCGAATTTTACATATAATCTGCCACTGGTTTTTTACTGTCCT
27116218 CAAATGATTTTCCACATGCTTCGCCTCGCATTGGACTTGGAATCTTTCAGAAATGCTGTCGGCAA
196 CAAATGATTTTCCACATGCTTCGCCTCGCATTGGACTTGGAATCTTTCAGAAATGCTGTCGGCAA
27116283 CTCGATTAATAGAAACTGCTTTGAAAGTATTAGAAGGCTTATTTCCTTTTCGAGCCTCCTCTGCT
261 CTCGATTAATAGAAACTGCTTTGAAAGTATTAGAAGGCTTATTTCCTTTTCGAGCCTCCTCTGCT
27116348 AGAATTTCAAGGAAAACATGTTCTATCGGTTTTGTCCACCTGAATTGCTTGGAGGTCCCTTATTT
326 AGAATTTCAAGGAAAACATGTTCTATCGGTTTTGTCCACCTGAATTGCTTGGAGGTCCCTTATTT
27116413 GTTGCCCTTACCCATTCTACATTAAATAATTGTCATTGTCAATAATTTCAATATCCAACAAGCTT
391 GTTGCCCTTACCCATTCTACATTAAATAATTGTCATTGTCAATAATTTCAATATCCAACAAGCTT
27116478 AAAACATAATATTAAATACAATATCCAACAAGGTTAAAACATAATCAATATCTAACAAATTCAAG
456 AAAACATAATATTAAATACAATATCCAACAAGGTTAAAACATAATCAATATCTAACAAATTCAAG
27116543 ACATATATTAAAATCCAACAATTTAAAATTTCAATATCATTATCCAACCAATATTTACAAAAAAA
521 ACATATATTAAAATCCAACAATTTAAAATTTCAATATCATTATCCAACCAATATTTACAAAAAAA
27116608 ATAATTTTTATACTAAAACATACATAACATAGAAATAGTAACCCTAAGCCCTAAATAAATCTAAT
586 ATAATTTTTATACTAAAACATACATAACATAGAAATAGTAACCCTAAGCCCTAAATAAATCTAAT
27116673 ATTTCTAGCCATATAATCAGTCCACATAGTTTGTGCAATTTCATCTTTCTTAGCAGACCATTCTC
651 ATTTCTAGCCATATAATCAGTCCACATAGTTTGTGCAATTTCATCTTTCTTAGCAGACCATTCTC
27116738 TTGCTCCTTGTCTTTCTTCTCGCTCCGTGAGAGTTTGTATTATCAAATCAGACTCAGACTCAGAC
716 TTGCTCCTTGTCTTTCTTCTCGCTCCGTGAGAGTTTGTATTATCAAATCAGACTCAGACTCAGAC
27116803 GCCTCGTATAATCCTTGATTAAGTAAATCACTAGGATCAACTCCCATTATA
781 GCCTCGTATAATCCTTGATTAAGTAAATCACTAGGATCAACTCCCATTATA
27116854 TTTACTTTTAACTAAAAAAGCTTTGGCCTCGGATTCATGACTCACTAGATAATCAAACACAGAAC
1 TTTACTTTTAACTAAAAAAGCTTTGGCCTCGGATTCATGACTCACTAGATAATCAAACACAGAAC
27116919 ACAAGACCACTTTCACTGCTGCATCATATGTCGCTCTATCACATGTGATCATTTTCATGTTATCA
66 ACAAGACCACTTTCACTGCTGCATCATATGTCGCTCTATCACATGTGATCATTTTCATGTTATCA
27116984 TCCCATCCAAAACCAGTTTCACCTCGAATTTTACATATAATCTGCCACTGGTTTTTTACTGTCCT
131 TCCCATCCAAAACCAGTTTCACCTCGAATTTTACATATAATCTGCCACTGGTTTTTTACTGTCCT
27117049 CAAATGATTTTCCACATGCTTCGCCTCGCATTGGACTTGGAATCTTTCAGAAATGCTGTCGGCAA
196 CAAATGATTTTCCACATGCTTCGCCTCGCATTGGACTTGGAATCTTTCAGAAATGCTGTCGGCAA
27117114 CTCGATTAATAGAAACTGCTTTGAAAGTATTAGAAGGCTTATTTCCTTTTCGAGCCTCCTCTGCT
261 CTCGATTAATAGAAACTGCTTTGAAAGTATTAGAAGGCTTATTTCCTTTTCGAGCCTCCTCTGCT
27117179 AGAATTTCAAGGAAAACATGTTCTATCGGTTTTGTCCACCTGAATTGCTTGGAGGTCCCTTATTT
326 AGAATTTCAAGGAAAACATGTTCTATCGGTTTTGTCCACCTGAATTGCTTGGAGGTCCCTTATTT
27117244 GTTGCCCTTACCCATTCTACATTAAATAATTGTCATTGTCAATAATTTCAATATCCAACAAGCTT
391 GTTGCCCTTACCCATTCTACATTAAATAATTGTCATTGTCAATAATTTCAATATCCAACAAGCTT
27117309 AAAACATAATATTAAATACAATATCCAACAAGGTTAAAACATAATCAATATCTAACAAATTCAAG
456 AAAACATAATATTAAATACAATATCCAACAAGGTTAAAACATAATCAATATCTAACAAATTCAAG
27117374 ACATATATTAAAATCCAACAATTTAAAATTTCAATATCATTATCCAACCAATATTTACAAAAAAA
521 ACATATATTAAAATCCAACAATTTAAAATTTCAATATCATTATCCAACCAATATTTACAAAAAAA
27117439 ATAATTTTTATACTAAAACATACATAACATAGAAATAGTAACCCTAAGCCCTAAATAAATCTAAT
586 ATAATTTTTATACTAAAACATACATAACATAGAAATAGTAACCCTAAGCCCTAAATAAATCTAAT
27117504 ATTTCTAGCCATATAATCAGTCCACATAGTTTGTGCAATTTCATCTTTCTTAGCAGACCATTCTC
651 ATTTCTAGCCATATAATCAGTCCACATAGTTTGTGCAATTTCATCTTTCTTAGCAGACCATTCTC
27117569 TTGCTCCTTGTCTTTCTTCTCGCTCCGTGAGAGTTTGTATTATCAAATCAGACTCAGACTCAGAC
716 TTGCTCCTTGTCTTTCTTCTCGCTCCGTGAGAGTTTGTATTATCAAATCAGACTCAGACTCAGAC
27117634 GCCTCGTATAATCCTTGATTAAGTAAATCACTAGGATCAACTCCCATTATA
781 GCCTCGTATAATCCTTGATTAAGTAAATCACTAGGATCAACTCCCATTATA
27117685 T
1 T
27117686 GATTATGAAT
Statistics
Matches: 832, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
831 832 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (831 bp):
TTTACTTTTAACTAAAAAAGCTTTGGCCTCGGATTCATGACTCACTAGATAATCAAACACAGAAC
ACAAGACCACTTTCACTGCTGCATCATATGTCGCTCTATCACATGTGATCATTTTCATGTTATCA
TCCCATCCAAAACCAGTTTCACCTCGAATTTTACATATAATCTGCCACTGGTTTTTTACTGTCCT
CAAATGATTTTCCACATGCTTCGCCTCGCATTGGACTTGGAATCTTTCAGAAATGCTGTCGGCAA
CTCGATTAATAGAAACTGCTTTGAAAGTATTAGAAGGCTTATTTCCTTTTCGAGCCTCCTCTGCT
AGAATTTCAAGGAAAACATGTTCTATCGGTTTTGTCCACCTGAATTGCTTGGAGGTCCCTTATTT
GTTGCCCTTACCCATTCTACATTAAATAATTGTCATTGTCAATAATTTCAATATCCAACAAGCTT
AAAACATAATATTAAATACAATATCCAACAAGGTTAAAACATAATCAATATCTAACAAATTCAAG
ACATATATTAAAATCCAACAATTTAAAATTTCAATATCATTATCCAACCAATATTTACAAAAAAA
ATAATTTTTATACTAAAACATACATAACATAGAAATAGTAACCCTAAGCCCTAAATAAATCTAAT
ATTTCTAGCCATATAATCAGTCCACATAGTTTGTGCAATTTCATCTTTCTTAGCAGACCATTCTC
TTGCTCCTTGTCTTTCTTCTCGCTCCGTGAGAGTTTGTATTATCAAATCAGACTCAGACTCAGAC
GCCTCGTATAATCCTTGATTAAGTAAATCACTAGGATCAACTCCCATTATA
Found at i:27119055 original size:149 final size:147
Alignment explanation
Indices: 27118750--27119046 Score: 506
Period size: 149 Copynumber: 2.0 Consensus size: 147
27118740 ATCCATCTAC
27118750 ACAAAATAATGCCACACAAATATATGATCACTACTACAAAAGATACAAGATTTTCATAAGATCAC
1 ACAAAATAATGCCACACAAATATATGATCACTACTACAAAAGATACAAGATTTTCATAAGATCAC
27118815 ATAAAGTTACCATGACTAAAAGTGCATACATACATAGCAAGCTAATTATAATTGCATAATAAATT
66 ATAAAGTTACCATGACTAAAAGTGCATACATACATAGCAAGCTAATTATAATTGCATAATAAATT
27118880 TTTTGAAAGTAGAATCT
131 TTTTGAAAGTAGAATCT
*
27118897 ACACAAAATAATGCCACACAAATATATGATCACTACTACAAAAGATGCAAGATTTTCATAAGATC
1 --ACAAAATAATGCCACACAAATATATGATCACTACTACAAAAGATACAAGATTTTCATAAGATC
*
27118962 ACATAAAGTTACCATGACTAAAAAAGTGCATACATACATATCAAGCTAATTATAATTGCCCAATA
64 ACATAAAGTTACCATGACT--AAAAGTGCATACATACATAGCAAGCTAATTATAATTG--C-ATA
27119027 AT-AATTTTTTGAAAGTAGAA
124 ATAAATTTTTTGAAAGTAGAA
27119047 CTTAAAATAT
Statistics
Matches: 141, Mismatches: 2, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
149 81 0.57
151 36 0.26
153 19 0.13
154 5 0.04
ACGTcount: A:0.46, C:0.16, G:0.10, T:0.27
Consensus pattern (147 bp):
ACAAAATAATGCCACACAAATATATGATCACTACTACAAAAGATACAAGATTTTCATAAGATCAC
ATAAAGTTACCATGACTAAAAGTGCATACATACATAGCAAGCTAATTATAATTGCATAATAAATT
TTTTGAAAGTAGAATCT
Found at i:27120241 original size:337 final size:337
Alignment explanation
Indices: 27119626--27120299 Score: 1339
Period size: 337 Copynumber: 2.0 Consensus size: 337
27119616 GTGTGTATAT
27119626 ATATATATTTTAAACATAACTAACAAAAATATCAGTCCCTAAGATGCCTATATAGATGAGTTATT
1 ATATATATTTTAAACATAACTAACAAAAATATCAGTCCCTAAGATGCCTATATAGATGAGTTATT
27119691 ACTAGCTTCCTGATTTCTTAAATCAAAATCTACTTGAAAAGTTAAAAACAAATTTGATTTTGGTT
66 ACTAGCTTCCTGATTTCTTAAATCAAAATCTACTTGAAAAGTTAAAAACAAATTTGATTTTGGTT
27119756 CATCTGTCATTTGCAAAAGTTTTGAGACTTTCCCATTTCTAACTTCATCTTTTCTTTAATTCTCA
131 CATCTGTCATTTGCAAAAGTTTTGAGACTTTCCCATTTCTAACTTCATCTTTTCTTTAATTCTCA
27119821 GTCTTTGAACTGTGAAAAAAATGGTGGGGTGCATGAAGTCATAATTTAGAGATAAATTGGCACGT
196 GTCTTTGAACTGTGAAAAAAATGGTGGGGTGCATGAAGTCATAATTTAGAGATAAATTGGCACGT
27119886 GACAGTCACCATAACTAAAATTTTTCCCTCCTGTTCATACTGTATATTCACTACAATCTCTTTCA
261 GACAGTCACCATAACTAAAATTTTTCCCTCCTGTTCATACTGTATATTCACTACAATCTCTTTCA
27119951 TGGAAATTTAAA
326 TGGAAATTTAAA
27119963 ATATATATTTTAAACATAACTAACAAAAATATCAGTCCCTAAGATGCCTATATAGATGAGTTATT
1 ATATATATTTTAAACATAACTAACAAAAATATCAGTCCCTAAGATGCCTATATAGATGAGTTATT
27120028 ACTAGCTTCCTGATTTCTTAAATCAAAATCTACTTGAAAAGTTAAAAACAAATTTGATTTTGGTT
66 ACTAGCTTCCTGATTTCTTAAATCAAAATCTACTTGAAAAGTTAAAAACAAATTTGATTTTGGTT
*
27120093 CATCTGTCATTTGCAAAAGTTTTGAGACTTTCCTATTTCTAACTTCATCTTTTCTTTAATTCTCA
131 CATCTGTCATTTGCAAAAGTTTTGAGACTTTCCCATTTCTAACTTCATCTTTTCTTTAATTCTCA
27120158 GTCTTTGAACTGTGAAAAAAATGGTGGGGTGCATGAAGTCATAATTTAGAGATAAATTGGCACGT
196 GTCTTTGAACTGTGAAAAAAATGGTGGGGTGCATGAAGTCATAATTTAGAGATAAATTGGCACGT
27120223 GACAGTCACCATAACTAAAATTTTTCCCTCCTGTTCATACTGTATATTCACTACAATCTCTTTCA
261 GACAGTCACCATAACTAAAATTTTTCCCTCCTGTTCATACTGTATATTCACTACAATCTCTTTCA
27120288 TGGAAATTTAAA
326 TGGAAATTTAAA
27120300 GCATGTTTGA
Statistics
Matches: 336, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
337 336 1.00
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (337 bp):
ATATATATTTTAAACATAACTAACAAAAATATCAGTCCCTAAGATGCCTATATAGATGAGTTATT
ACTAGCTTCCTGATTTCTTAAATCAAAATCTACTTGAAAAGTTAAAAACAAATTTGATTTTGGTT
CATCTGTCATTTGCAAAAGTTTTGAGACTTTCCCATTTCTAACTTCATCTTTTCTTTAATTCTCA
GTCTTTGAACTGTGAAAAAAATGGTGGGGTGCATGAAGTCATAATTTAGAGATAAATTGGCACGT
GACAGTCACCATAACTAAAATTTTTCCCTCCTGTTCATACTGTATATTCACTACAATCTCTTTCA
TGGAAATTTAAA
Found at i:27123792 original size:66 final size:66
Alignment explanation
Indices: 27123670--27123853 Score: 262
Period size: 66 Copynumber: 2.8 Consensus size: 66
27123660 CCTAAAACGG
* * * *
27123670 CCTAGCACACGGGCGTGTGGCTTGGACGTGTGTCACAAGTCTGTATACTCAACATTTTTCACATG
1 CCTAGCACACGGGCGTGTGGCTTGGCCGTGTGTCACAAGTCAGTATGCTCACCATTTTTCACATG
27123735 A
66 A
* *
27123736 CCTAACACACGGACGTGTGGCTTGGCCGTGTGTCACAAGTCAGTATGCTCACCATTTTTCACATG
1 CCTAGCACACGGGCGTGTGGCTTGGCCGTGTGTCACAAGTCAGTATGCTCACCATTTTTCACATG
*
27123801 G
66 A
* * *
27123802 CCTAGCACACGGGCATGTGGCTTGGCCGTGTGACCCAAGTCAGTGA-GCTCAC
1 CCTAGCACACGGGCGTGTGGCTTGGCCGTGTGTCACAAGTCAGT-ATGCTCAC
27123854 TAGTTTGGAC
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
66 104 0.99
67 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.26
Consensus pattern (66 bp):
CCTAGCACACGGGCGTGTGGCTTGGCCGTGTGTCACAAGTCAGTATGCTCACCATTTTTCACATG
A
Found at i:27134730 original size:14 final size:13
Alignment explanation
Indices: 27134707--27134755 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
27134697 AATTCAAAGT
27134707 AAATAATAATTTA
1 AAATAATAATTTA
27134720 AAATAAATAATTTA
1 AAAT-AATAATTTA
* * *
27134734 CAACAACAATTTA
1 AAATAATAATTTA
27134747 AAA-AATAAT
1 AAATAATAAT
27134756 AATAAAAGGG
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
12 5 0.17
13 14 0.47
14 11 0.37
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATAATAATTTA
Found at i:27136832 original size:37 final size:37
Alignment explanation
Indices: 27136782--27136856 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
27136772 ACCTAAACAA
27136782 AAATGACATGTTTCATAAGTAACAAGCAAAAAACCCT
1 AAATGACATGTTTCATAAGTAACAAGCAAAAAACCCT
27136819 AAATGACATGTTTCATAAGTAACAAGCAAAAAACCCT
1 AAATGACATGTTTCATAAGTAACAAGCAAAAAACCCT
27136856 A
1 A
27136857 CTTAATTAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.49, C:0.19, G:0.11, T:0.21
Consensus pattern (37 bp):
AAATGACATGTTTCATAAGTAACAAGCAAAAAACCCT
Found at i:27138357 original size:4 final size:4
Alignment explanation
Indices: 27138348--27138373 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
27138338 ATCAAATTGC
27138348 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
27138374 CTGACACTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:27149304 original size:95 final size:95
Alignment explanation
Indices: 27149137--27149312 Score: 257
Period size: 95 Copynumber: 1.9 Consensus size: 95
27149127 GGCGTCATTA
* * *
27149137 ATAGTAGTGGAATTCATAGTCCAATAAAAGGTAAATGATATCATCTCATAGGCATGACATGGTTG
1 ATAGTAGTGAAATTCATACTCCAATAAAAGGTAAATGATATCATCTCATAAGCATGACATGGTTG
*
27149202 GTAGAAAAGTAACATGACATGACTTCCTTT
66 ATAGAAAAGTAACATGACATGACTTCCTTT
* *
27149232 ATAGTAGTGAAATTCATAACT-CGATAAAAGGTAAATGATATTC-TCTCATAAGCATTACATGGT
1 ATAGTAGTGAAATTCAT-ACTCCAATAAAAGGTAAATGATA-TCATCTCATAAGCATGACATGGT
*
27149295 TGATGGAAAAGTAACATG
64 TGATAGAAAAGTAACATG
27149313 GTCATGGGTC
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
95 68 0.94
96 4 0.06
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (95 bp):
ATAGTAGTGAAATTCATACTCCAATAAAAGGTAAATGATATCATCTCATAAGCATGACATGGTTG
ATAGAAAAGTAACATGACATGACTTCCTTT
Found at i:27152950 original size:13 final size:13
Alignment explanation
Indices: 27152934--27152958 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27152924 ATGTTTAGAT
27152934 GAAATGGTTATAC
1 GAAATGGTTATAC
27152947 GAAATGGTTATA
1 GAAATGGTTATA
27152959 TGAGATGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (13 bp):
GAAATGGTTATAC
Found at i:27152950 original size:26 final size:26
Alignment explanation
Indices: 27152896--27152961 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
27152886 ATTATGTATT
* *
27152896 AAATGTGTAAATGAAATGGTAAAATG
1 AAATGTTTAAATGAAATGGTAAAACG
* * *
27152922 AAATGTTTAGATGAAATGGTTATACG
1 AAATGTTTAAATGAAATGGTAAAACG
* *
27152948 AAATGGTTATATGA
1 AAATGTTTAAATGA
27152962 GATGATTGTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.44, C:0.02, G:0.23, T:0.32
Consensus pattern (26 bp):
AAATGTTTAAATGAAATGGTAAAACG
Found at i:27162521 original size:14 final size:14
Alignment explanation
Indices: 27162502--27162541 Score: 62
Period size: 15 Copynumber: 2.8 Consensus size: 14
27162492 TATAATCTTC
27162502 TTTTATATTTTAAT
1 TTTTATATTTTAAT
*
27162516 TTTTATATATTAAAT
1 TTTTATAT-TTTAAT
27162531 TTTTATATTTT
1 TTTTATATTTT
27162542 TATATTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTATATTTTAAT
Found at i:27162533 original size:21 final size:22
Alignment explanation
Indices: 27162509--27162551 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
27162499 TTCTTTTATA
27162509 TTTTA-ATTTTTATATATTAAAT
1 TTTTATATTTTTATAT-TTAAAT
27162531 TTTTATATTTTTATATTTAAA
1 TTTTATATTTTTATATTTAAA
27162552 AATCTTGCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTTATATTTTTATATTTAAAT
Found at i:27162542 original size:8 final size:8
Alignment explanation
Indices: 27162502--27162548 Score: 55
Period size: 8 Copynumber: 6.2 Consensus size: 8
27162492 TATAATCTTC
27162502 TTTTATA-
1 TTTTATAT
27162509 TTTTA-AT
1 TTTTATAT
27162516 TTTTATA-
1 TTTTATAT
* *
27162523 TATTAAAT
1 TTTTATAT
27162531 TTTTATAT
1 TTTTATAT
27162539 TTTTATAT
1 TTTTATAT
27162547 TT
1 TT
27162549 AAAAATCTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
6 1 0.03
7 15 0.45
8 17 0.52
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (8 bp):
TTTTATAT
Found at i:27165347 original size:15 final size:15
Alignment explanation
Indices: 27165327--27165366 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 15
27165317 GTTATCATTA
27165327 TTTTTACTATTATTG
1 TTTTTACTATTATTG
27165342 TTTTTA--A-TATTG
1 TTTTTACTATTATTG
*
27165354 TTATTACTATTAT
1 TTTTTACTATTAT
27165367 CATGCTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 6
0.75 0.04 0.21
Matches are distributed among these distances:
12 10 0.48
13 1 0.05
14 1 0.05
15 9 0.43
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.65
Consensus pattern (15 bp):
TTTTTACTATTATTG
Found at i:27166037 original size:14 final size:14
Alignment explanation
Indices: 27166018--27166047 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
27166008 TCAAATCACC
27166018 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
27166032 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
27166046 GG
1 GG
27166048 CCTAAATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.13, G:0.47, T:0.33
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:27171162 original size:14 final size:14
Alignment explanation
Indices: 27171143--27171174 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
27171133 TCCAATCACC
27171143 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
27171157 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
27171171 GGGC
1 GGGC
27171175 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:27171506 original size:18 final size:18
Alignment explanation
Indices: 27171485--27171524 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
27171475 TACAACTTAC
*
27171485 ATATACATCTATATATAT
1 ATATACATCTACATATAT
*
27171503 ATATATATCTACATATAT
1 ATATACATCTACATATAT
27171521 ATAT
1 ATAT
27171525 TATACTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (18 bp):
ATATACATCTACATATAT
Found at i:27171508 original size:36 final size:36
Alignment explanation
Indices: 27171432--27171508 Score: 86
Period size: 36 Copynumber: 2.1 Consensus size: 36
27171422 ACATATCTTT
* * *
27171432 TATATTTTATAATTCACATATACATATATATTTTCC
1 TATATTTTACAATTCACATATACATATATATTATCA
*
27171468 TATATTTTACAACTT-ACATATACATCTATATATAT-A
1 TATATTTTACAA-TTCACATATACATATATAT-TATCA
27171504 TATAT
1 TATAT
27171509 ATCTACATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
36 31 0.89
37 4 0.11
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (36 bp):
TATATTTTACAATTCACATATACATATATATTATCA
Found at i:27171967 original size:19 final size:19
Alignment explanation
Indices: 27171943--27171982 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
27171933 AATGCTCTTT
*
27171943 AATCAAAAATATAAATAAA
1 AATCAAAAACATAAATAAA
27171962 AATCAAAAACATAAATAAA
1 AATCAAAAACATAAATAAA
27171981 AA
1 AA
27171983 ACTCATTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (19 bp):
AATCAAAAACATAAATAAA
Found at i:27172568 original size:6 final size:6
Alignment explanation
Indices: 27172557--27172581 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
27172547 TGACAACTCC
27172557 CGTTTT CGTTTT CGTTTT CGTTTT C
1 CGTTTT CGTTTT CGTTTT CGTTTT C
27172582 AAAATCCTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.20, G:0.16, T:0.64
Consensus pattern (6 bp):
CGTTTT
Found at i:27173920 original size:17 final size:17
Alignment explanation
Indices: 27173900--27173934 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
27173890 ATTTATTTAA
*
27173900 TCAATTAATTTAATTTC
1 TCAATTAAATTAATTTC
*
27173917 TCAATTAAATTATTTTC
1 TCAATTAAATTAATTTC
27173934 T
1 T
27173935 TAACTCAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.54
Consensus pattern (17 bp):
TCAATTAAATTAATTTC
Found at i:27180538 original size:13 final size:13
Alignment explanation
Indices: 27180520--27180548 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
27180510 ATGCCGGGTA
27180520 GATTACATATTAG
1 GATTACATATTAG
27180533 GATTACATATTAG
1 GATTACATATTAG
27180546 GAT
1 GAT
27180549 CAAAAGTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (13 bp):
GATTACATATTAG
Found at i:27186104 original size:40 final size:40
Alignment explanation
Indices: 27186031--27186175 Score: 152
Period size: 40 Copynumber: 3.7 Consensus size: 40
27186021 AAACAGGCCT
* ** *
27186031 TTAGCGGCGTTTGGATAAAAAAAGCCGCTAAAGATCGAGCA
1 TTAGCGGCGTTT-CATGGAAAACGCCGCTAAAGATCGAGCA
* * *
27186072 TTAGCAGCGTTTCTTGGAAAACGCCGCTAAAGATCGAGTA
1 TTAGCGGCGTTTCATGGAAAACGCCGCTAAAGATCGAGCA
*
27186112 TTAGCGGCGTTT-ATGGAAAACGCCGCTAAA-AT-AAGCA
1 TTAGCGGCGTTTCATGGAAAACGCCGCTAAAGATCGAGCA
* * * *
27186149 TTAGTGGCGTTTCCTAGAAAGCGCCGC
1 TTAGCGGCGTTTCATGGAAAACGCCGC
27186176 AAAAAACCTA
Statistics
Matches: 88, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
37 14 0.16
38 13 0.15
39 17 0.19
40 33 0.38
41 11 0.12
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (40 bp):
TTAGCGGCGTTTCATGGAAAACGCCGCTAAAGATCGAGCA
Found at i:27186482 original size:40 final size:41
Alignment explanation
Indices: 27186198--27186566 Score: 439
Period size: 41 Copynumber: 9.0 Consensus size: 41
27186188 CTCGAGGATA
*
27186198 TAGCGGCGTTTTT-GAGAAAGCACCGCTAATGCTCAGGGCTT
1 TAGCGGCGTTTTTGGA-AAAGCGCCGCTAATGCTCAGGGCTT
* * *
27186239 TAGCGGCGTTTTTGGAAAAGCGTCGCTAATACTAAGGGCTT
1 TAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGCTT
* *
27186280 TAGCAGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGCTT
1 TAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGCTT
* * * *
27186321 TAGCAGCGTTTTTGGGAATGTGCCGCTAATGCTCAGGGCTT
1 TAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGCTT
* *
27186362 TAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGATT
1 TAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGCTT
* *
27186403 TAACGGCGTTTTTGG-AAAGCGTCGCTAATGCTCAGGGCTT
1 TAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGCTT
*
27186443 TAGCGGCG-TTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTT
1 TAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGC-TT
* * **
27186484 TAGCGGCATTTTT-GATAAAACGCCG-TGAATGCTCTA--TTTT
1 TAGCGGCGTTTTTGGA-AAAGCGCCGCT-AATGCTC-AGGGCTT
* *
27186524 TAGCGGCGTTTTCT-AAAAAGCGCCGCTAATGCTCAGGGATT
1 TAGCGGCGTTTT-TGGAAAAGCGCCGCTAATGCTCAGGGCTT
27186565 TA
1 TA
27186567 AAATAATTTA
Statistics
Matches: 287, Mismatches: 30, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
39 7 0.02
40 79 0.28
41 179 0.62
42 21 0.07
43 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (41 bp):
TAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGCTT
Found at i:27186845 original size:20 final size:21
Alignment explanation
Indices: 27186811--27186850 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
27186801 TGTGTTAAGG
27186811 GTTTATGGTTTTAGGGTTTAA
1 GTTTATGGTTTTAGGGTTTAA
27186832 GTTTATGG-TTTAGGGTTTA
1 GTTTATGGTTTTAGGGTTTA
27186851 GATTAACTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.53
Consensus pattern (21 bp):
GTTTATGGTTTTAGGGTTTAA
Found at i:27186851 original size:7 final size:7
Alignment explanation
Indices: 27186740--27186851 Score: 50
Period size: 7 Copynumber: 15.9 Consensus size: 7
27186730 TATCACTATA
27186740 GTTTAGG
1 GTTTAGG
* *
27186747 GGTTATG
1 GTTTAGG
*
27186754 GTTTATG
1 GTTTAGG
*
27186761 GTTTATG
1 GTTTAGG
*
27186768 GTTTAAAG
1 GTTT-AGG
* *
27186776 G-CTGGG
1 GTTTAGG
*
27186782 GTTTAAG
1 GTTTAGG
27186789 GTTTAGAG
1 GTTTAG-G
*
27186797 G-TTATGT
1 GTTTA-GG
*
27186804 GTTAAGG
1 GTTTAGG
27186811 GTTTATGG
1 GTTTA-GG
*
27186819 TTTTAGG
1 GTTTAGG
*
27186826 GTTTA-A
1 GTTTAGG
*
27186832 GTTTATG
1 GTTTAGG
27186839 GTTTAGG
1 GTTTAGG
27186846 GTTTAG
1 GTTTAG
27186852 ATTAACTAGT
Statistics
Matches: 78, Mismatches: 20, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
6 7 0.09
7 57 0.73
8 14 0.18
ACGTcount: A:0.19, C:0.01, G:0.35, T:0.46
Consensus pattern (7 bp):
GTTTAGG
Found at i:27187123 original size:14 final size:15
Alignment explanation
Indices: 27187097--27187154 Score: 79
Period size: 14 Copynumber: 4.1 Consensus size: 15
27187087 AATAATTATA
27187097 TATGGATTTAGGGAT
1 TATGGATTTAGGGAT
27187112 TATGGA-TTAGGGAT
1 TATGGATTTAGGGAT
27187126 TATGG-TTTAAGGG-T
1 TATGGATTT-AGGGAT
27187140 TA-GGATTTAGGGAT
1 TATGGATTTAGGGAT
27187154 T
1 T
27187155 TTGTTTAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
13 6 0.15
14 23 0.59
15 10 0.26
ACGTcount: A:0.26, C:0.00, G:0.34, T:0.40
Consensus pattern (15 bp):
TATGGATTTAGGGAT
Found at i:27187150 original size:28 final size:29
Alignment explanation
Indices: 27187097--27187162 Score: 77
Period size: 28 Copynumber: 2.3 Consensus size: 29
27187087 AATAATTATA
27187097 TATGGATTT-AGGGATTATGGATTAGGGAT
1 TATGG-TTTAAGGGATTATGGATTAGGGAT
27187126 TATGGTTTAAGGG-TTA-GGATTTAGGGAT
1 TATGGTTTAAGGGATTATGGA-TTAGGGAT
*
27187154 T-TTGTTTAA
1 TATGGTTTAA
27187163 AATTAAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
27 10 0.29
28 15 0.44
29 9 0.26
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (29 bp):
TATGGTTTAAGGGATTATGGATTAGGGAT
Done.