Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 99 of 187
Found at i:28887888 original size:13 final size:13
Alignment explanation
Indices: 28887870--28887895 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
28887860 AAACTACAAC
28887870 GTGCAAATCCTAT
1 GTGCAAATCCTAT
28887883 GTGCAAATCCTAT
1 GTGCAAATCCTAT
28887896 CTCCCTAGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
GTGCAAATCCTAT
Found at i:28888265 original size:19 final size:19
Alignment explanation
Indices: 28888241--28888332 Score: 166
Period size: 19 Copynumber: 4.8 Consensus size: 19
28888231 AATCTTCAAG
28888241 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
28888260 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
28888279 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
28888298 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
28888317 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
28888333 AGATATGATT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 69 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:28888285 original size:38 final size:38
Alignment explanation
Indices: 28888241--28888355 Score: 185
Period size: 38 Copynumber: 2.9 Consensus size: 38
28888231 AATCTTCAAG
28888241 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
28888279 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
*
28888317 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT---AGATATGA-TATGTAATCTTAGA
28888356 GATTTAATTT
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
38 51 0.71
41 8 0.11
42 13 0.18
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.39
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
Found at i:28888582 original size:23 final size:23
Alignment explanation
Indices: 28888534--28888582 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
28888524 GCGTTCTTAT
* *
28888534 TTTATTGATTTGTGTATAATTTA
1 TTTATTGATTTGTATATAATTGA
**
28888557 TTTATTGATTTGTATATTGTTGA
1 TTTATTGATTTGTATATAATTGA
28888580 TTT
1 TTT
28888583 CAAATCTCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.14, T:0.63
Consensus pattern (23 bp):
TTTATTGATTTGTATATAATTGA
Found at i:28893856 original size:38 final size:41
Alignment explanation
Indices: 28893802--28893887 Score: 115
Period size: 38 Copynumber: 2.2 Consensus size: 41
28893792 CATTTAATTA
** *
28893802 ATTTTTAAAATTTAAAAATT-TAAAAAAT-TATAAAA-ACT
1 ATTTTTAAAAAATAAAAATTATAAAAAATATATAAAACAAT
*
28893840 ATTTTTAAAAAATAAAAATTATTAAAAATATATAAAACAAT
1 ATTTTTAAAAAATAAAAATTATAAAAAATATATAAAACAAT
28893881 ATTTTTA
1 ATTTTTA
28893888 TATTTTAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
38 18 0.44
39 7 0.17
40 7 0.17
41 9 0.22
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (41 bp):
ATTTTTAAAAAATAAAAATTATAAAAAATATATAAAACAAT
Found at i:28893874 original size:20 final size:19
Alignment explanation
Indices: 28893801--28893876 Score: 54
Period size: 17 Copynumber: 4.1 Consensus size: 19
28893791 ACATTTAATT
*
28893801 AATTTTTAAAAT-T-TAAA
1 AATTTTAAAAATATATAAA
*
28893818 AATTTAAAAAAT-TATAAAA
1 AATTTTAAAAATATAT-AAA
*
28893837 ACTATTTTTAAAA-A-ATAAA
1 A--ATTTTAAAAATATATAAA
28893856 AATTATTAAAAATATATAAA
1 AATT-TTAAAAATATATAAA
28893876 A
1 A
28893877 CAATATTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
17 14 0.30
18 7 0.15
19 9 0.20
20 8 0.17
21 8 0.17
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (19 bp):
AATTTTAAAAATATATAAA
Found at i:28894219 original size:20 final size:20
Alignment explanation
Indices: 28894182--28894219 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
28894172 AGAATAAACT
*
28894182 TTTACCAAAATATTTAAAGA
1 TTTACCAAAATATCTAAAGA
28894202 TTTACCAATAAT-TCTAAA
1 TTTACCAA-AATATCTAAA
28894220 ATCATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.47, C:0.13, G:0.03, T:0.37
Consensus pattern (20 bp):
TTTACCAAAATATCTAAAGA
Found at i:28894464 original size:6 final size:6
Alignment explanation
Indices: 28894453--28894478 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
28894443 ACCCACACAG
28894453 ATTCTA ATTCTA ATTCTA ATTCTA AT
1 ATTCTA ATTCTA ATTCTA ATTCTA AT
28894479 GTACTAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTCTA
Found at i:28901484 original size:15 final size:14
Alignment explanation
Indices: 28901464--28901522 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 14
28901454 ATAATAAAAC
28901464 AAAGAAATAAAAGAA
1 AAAGAAA-AAAAGAA
*
28901479 AAAGAAACAAAGAA
1 AAAGAAAAAAAGAA
28901493 CAAACGAAACAAGAAGAA
1 -AAA-GAAA-AA-AAGAA
28901511 AAAGAAAGAAAA
1 AAAGAAA-AAAA
28901523 AAAGGGGGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 6 0.16
15 12 0.32
16 10 0.27
17 4 0.11
18 5 0.14
ACGTcount: A:0.76, C:0.07, G:0.15, T:0.02
Consensus pattern (14 bp):
AAAGAAAAAAAGAA
Found at i:28901503 original size:16 final size:14
Alignment explanation
Indices: 28901473--28901517 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 14
28901463 CAAAGAAATA
28901473 AAAGAAAAAGAAAC
1 AAAGAAAAAGAAAC
28901487 AAAGAACAAACGAAAC
1 AAAGAA-AAA-GAAAC
28901503 AAGAAGAAAAAGAAA
1 -A-AAGAAAAAGAAA
28901518 GAAAAAAAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.22
15 3 0.11
16 9 0.33
17 4 0.15
18 5 0.19
ACGTcount: A:0.76, C:0.09, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAGAAAC
Found at i:28901506 original size:23 final size:22
Alignment explanation
Indices: 28901460--28901516 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
28901450 TATAATAATA
*
28901460 AAACAAAGAAATAAAAGAAAAAG
1 AAACAAAG-AACAAAAGAAAAAG
*
28901483 AAACAAAGAACAAACGAAACAAG
1 AAACAAAGAACAAAAGAAA-AAG
*
28901506 AAGAAAAAGAA
1 AA-ACAAAGAA
28901517 AGAAAAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 9 0.31
23 13 0.45
24 7 0.24
ACGTcount: A:0.75, C:0.09, G:0.14, T:0.02
Consensus pattern (22 bp):
AAACAAAGAACAAAAGAAAAAG
Found at i:28901515 original size:9 final size:10
Alignment explanation
Indices: 28901459--28901523 Score: 53
Period size: 10 Copynumber: 6.4 Consensus size: 10
28901449 ATATAATAAT
*
28901459 AAAACAAAGA
1 AAAAGAAAGA
*
28901469 AATA-AAAGA
1 AAAAGAAAGA
*
28901478 AAAAGAAACA
1 AAAAGAAAGA
*
28901488 AAGAACAAACGA
1 AA-AAGAAA-GA
28901500 AACAAG-AAGA
1 AA-AAGAAAGA
28901510 AAAAGAAAGA
1 AAAAGAAAGA
28901520 AAAA
1 AAAA
28901524 AAGGGGGGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
9 11 0.25
10 21 0.48
11 7 0.16
12 5 0.11
ACGTcount: A:0.77, C:0.08, G:0.14, T:0.02
Consensus pattern (10 bp):
AAAAGAAAGA
Found at i:28909030 original size:17 final size:17
Alignment explanation
Indices: 28909008--28909048 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
28908998 AAAAAGAAAC
28909008 AAAGAACAAA-CGAAAGA
1 AAAGAA-AAAGCGAAAGA
28909025 AAAGAAAAAGGCGAAAG-
1 AAAGAAAAA-GCGAAAGA
28909042 AAAGAAA
1 AAAGAAA
28909049 GGAGAAGCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 3 0.14
17 13 0.59
18 6 0.27
ACGTcount: A:0.71, C:0.07, G:0.22, T:0.00
Consensus pattern (17 bp):
AAAGAAAAAGCGAAAGA
Found at i:28909981 original size:40 final size:40
Alignment explanation
Indices: 28909926--28910001 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
28909916 GAGTGCCAAT
* *
28909926 TTACTTCAATTTAGCCGATGATACACTTGGTGCCAATTTA
1 TTACTTCAATTTAGCCGATGAGACACTAGGTGCCAATTTA
*
28909966 TTACTTCGAA-TTAGCCGATGAGGCACTAGGTGCCAA
1 TTACTTC-AATTTAGCCGATGAGACACTAGGTGCCAA
28910002 ACTGGTGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 30 0.94
41 2 0.06
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (40 bp):
TTACTTCAATTTAGCCGATGAGACACTAGGTGCCAATTTA
Found at i:28911638 original size:18 final size:17
Alignment explanation
Indices: 28911615--28911650 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
28911605 TCAATTTTCG
28911615 AATTCAAAAAACTCGAAT
1 AATTCAAAAAACT-GAAT
*
28911633 AATTCAAATAACTGAAT
1 AATTCAAAAAACTGAAT
28911650 A
1 A
28911651 CCAAACTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.56, C:0.14, G:0.06, T:0.25
Consensus pattern (17 bp):
AATTCAAAAAACTGAAT
Found at i:28911821 original size:32 final size:31
Alignment explanation
Indices: 28911744--28911823 Score: 94
Period size: 32 Copynumber: 2.5 Consensus size: 31
28911734 AATCCCCCAC
*
28911744 AAATCTTTTATTTCCCCTTCTTTACCCTAAA
1 AAATCTTTTATTTCCCCTCCTTTACCCTAAA
28911775 AAATC-TTTACTTTCCTTCC-CCTTTACTCC-AAA
1 AAATCTTTTA-TTTCC--CCTCCTTTAC-CCTAAA
28911807 AAATCTTTTATTTCCCC
1 AAATCTTTTATTTCCCC
28911824 ATTTACCCCC
Statistics
Matches: 43, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
30 6 0.14
31 10 0.23
32 19 0.44
33 8 0.19
ACGTcount: A:0.25, C:0.31, G:0.00, T:0.44
Consensus pattern (31 bp):
AAATCTTTTATTTCCCCTCCTTTACCCTAAA
Found at i:28921196 original size:23 final size:23
Alignment explanation
Indices: 28921170--28921215 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
28921160 GAATTTGAAA
28921170 TCTAAAAAATAAAGGGACCAAAT
1 TCTAAAAAATAAAGGGACCAAAT
28921193 TCTAAAAAATAAAGGGACCAAAT
1 TCTAAAAAATAAAGGGACCAAAT
28921216 CAATGAAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.13, G:0.13, T:0.17
Consensus pattern (23 bp):
TCTAAAAAATAAAGGGACCAAAT
Found at i:28922845 original size:28 final size:28
Alignment explanation
Indices: 28922814--28922871 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
28922804 TTAAAAGGAC
28922814 TGAAGATATTAAATATAAAGAGATAGGG
1 TGAAGATATTAAATATAAAGAGATAGGG
28922842 TGAAGATATTAAATATAAAGAGATAGGG
1 TGAAGATATTAAATATAAAGAGATAGGG
28922870 TG
1 TG
28922872 GGGATGAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (28 bp):
TGAAGATATTAAATATAAAGAGATAGGG
Found at i:28925310 original size:25 final size:26
Alignment explanation
Indices: 28925272--28925329 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
28925262 AAATTTAGGA
*
28925272 GTAAAATGGATAAAA-TTTACCAGGG
1 GTAAAATCGATAAAATTTTACCAGGG
* **
28925297 GTAAAATCGTTAAAATTTTATTAGGG
1 GTAAAATCGATAAAATTTTACCAGGG
28925323 GTAAAAT
1 GTAAAAT
28925330 AGGGATGAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 13 0.46
26 15 0.54
ACGTcount: A:0.43, C:0.05, G:0.21, T:0.31
Consensus pattern (26 bp):
GTAAAATCGATAAAATTTTACCAGGG
Found at i:28925323 original size:26 final size:25
Alignment explanation
Indices: 28925266--28925329 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
28925256 TCTCAAAAAT
* *
28925266 TTAGGAGTAAAATGGATAAAATTTA
1 TTAGGGGTAAAATCGATAAAATTTA
** *
28925291 CCAGGGGTAAAATCGTTAAAATTTTA
1 TTAGGGGTAAAATCGATAAAA-TTTA
28925317 TTAGGGGTAAAAT
1 TTAGGGGTAAAAT
28925330 AGGGATGAGA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
25 16 0.52
26 15 0.48
ACGTcount: A:0.42, C:0.05, G:0.22, T:0.31
Consensus pattern (25 bp):
TTAGGGGTAAAATCGATAAAATTTA
Found at i:28930221 original size:15 final size:15
Alignment explanation
Indices: 28930201--28930234 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
28930191 CTAACTCATT
*
28930201 TTATTTCTTTTATTA
1 TTATTTATTTTATTA
*
28930216 TTATTTATTTTATTT
1 TTATTTATTTTATTA
28930231 TTAT
1 TTAT
28930235 AGCCACTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (15 bp):
TTATTTATTTTATTA
Found at i:28930764 original size:25 final size:26
Alignment explanation
Indices: 28930716--28930779 Score: 94
Period size: 25 Copynumber: 2.5 Consensus size: 26
28930706 ACATATTTTC
28930716 TCAAAATTTTACTAGGGGTAAAATCG
1 TCAAAATTTTACTAGGGGTAAAATCG
* *
28930742 TCAAAATTTTA-TCGGGGTAAAATTG
1 TCAAAATTTTACTAGGGGTAAAATCG
*
28930767 TTAAAATTTTACT
1 TCAAAATTTTACT
28930780 GGGACTGAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 22 0.65
26 12 0.35
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (26 bp):
TCAAAATTTTACTAGGGGTAAAATCG
Found at i:28931926 original size:36 final size:36
Alignment explanation
Indices: 28931886--28932109 Score: 215
Period size: 35 Copynumber: 6.3 Consensus size: 36
28931876 GTTTTAAACA
*
28931886 GTTGGGATAGACCATTCTATGCCAACCTTAAAAAAG
1 GTTGGGATAGACCAGTCTATGCCAACCTTAAAAAAG
* * *
28931922 GTTGGGATAGACCCA-TCTAAGGCAA-CTTTAAAAAG
1 GTTGGGATAGA-CCAGTCTATGCCAACCTTAAAAAAG
* * *
28931957 TTTGGGATAAACCATTCTATGCCAACCTTAAAAAAG
1 GTTGGGATAGACCAGTCTATGCCAACCTTAAAAAAG
* * ** **
28931993 GTTGGGATAGACCCGTCTAAGGTAA-CTTTTAAAAG
1 GTTGGGATAGACCAGTCTATGCCAACCTTAAAAAAG
* *
28932028 TTTGGGATAGACTAGTCTATGCCAACCTT-AAAAAG
1 GTTGGGATAGACCAGTCTATGCCAACCTTAAAAAAG
* * * * *
28932063 GTTGGGATAGACCCGTCTAAGGCAA-ATTTAAAAAG
1 GTTGGGATAGACCAGTCTATGCCAACCTTAAAAAAG
*
28932098 GTTGGAATAGAC
1 GTTGGGATAGAC
28932110 TTTATCTGTG
Statistics
Matches: 152, Mismatches: 31, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
34 5 0.03
35 95 0.62
36 49 0.32
37 3 0.02
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.26
Consensus pattern (36 bp):
GTTGGGATAGACCAGTCTATGCCAACCTTAAAAAAG
Found at i:28932097 original size:70 final size:71
Alignment explanation
Indices: 28931878--28932109 Score: 360
Period size: 71 Copynumber: 3.3 Consensus size: 71
28931868 TATGCTGAGT
* *
28931878 TTTAAACAG-TTGGGATAGACCATTCTATGCCAACCTTAAAAAAGGTTGGGATAGACCCATCTAA
1 TTTAAAAAGTTTGGGATAGACCATTCTATGCCAACCTTAAAAAAGGTTGGGATAGACCCGTCTAA
28931942 GGCAAC
66 GGCAAC
*
28931948 TTTAAAAAGTTTGGGATAAACCATTCTATGCCAACCTTAAAAAAGGTTGGGATAGACCCGTCTAA
1 TTTAAAAAGTTTGGGATAGACCATTCTATGCCAACCTTAAAAAAGGTTGGGATAGACCCGTCTAA
*
28932013 GGTAAC
66 GGCAAC
* * *
28932019 TTTTAAAAGTTTGGGATAGACTAGTCTATGCCAACCTT-AAAAAGGTTGGGATAGACCCGTCTAA
1 TTTAAAAAGTTTGGGATAGACCATTCTATGCCAACCTTAAAAAAGGTTGGGATAGACCCGTCTAA
*
28932083 GGCAAA
66 GGCAAC
* *
28932089 TTTAAAAAGGTTGGAATAGAC
1 TTTAAAAAGTTTGGGATAGAC
28932110 TTTATCTGTG
Statistics
Matches: 148, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
70 56 0.38
71 92 0.62
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (71 bp):
TTTAAAAAGTTTGGGATAGACCATTCTATGCCAACCTTAAAAAAGGTTGGGATAGACCCGTCTAA
GGCAAC
Found at i:28933409 original size:110 final size:110
Alignment explanation
Indices: 28933212--28933415 Score: 268
Period size: 110 Copynumber: 1.9 Consensus size: 110
28933202 TTCAACCTCA
* * * * * * *
28933212 AAACTCTAAATTATAACTTCAGTTCCTTATTAAAGGTTAAAATTTTCAGATTAGTTGAGTTTTTA
1 AAACTCTAAATTATAACTTCAGTTCCTTATTAAAGGATAAAACTTTAAGATTAATTCACTCTTTA
*
28933277 AGTATCAATTCAACCTTAAAGCTC-AAAATTCTAACTTTTTTTTG
66 AGTATCAATTCAAACTTAAAGCTCTAAAATTCTAACTTTTTTTTG
* * *
28933321 AAACTTCTAAATTCTAGCTTCAGTTCTTTATTAAAGGATAAAACTTTAAG-TGTAATTCACTCTT
1 AAAC-TCTAAATTATAACTTCAGTTCCTTATTAAAGGATAAAACTTTAAGAT-TAATTCACTCTT
*
28933385 TAAGTTTCAATTCAAACTTAAAGCTCTAAAA
64 TAAGTATCAATTCAAACTTAAAGCTCTAAAA
28933416 CACAAGTAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
109 5 0.06
110 71 0.89
111 4 0.05
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (110 bp):
AAACTCTAAATTATAACTTCAGTTCCTTATTAAAGGATAAAACTTTAAGATTAATTCACTCTTTA
AGTATCAATTCAAACTTAAAGCTCTAAAATTCTAACTTTTTTTTG
Found at i:28934246 original size:17 final size:18
Alignment explanation
Indices: 28934224--28934258 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
28934214 AAATGGTTTG
*
28934224 GTTATAA-ATTTTTTAAT
1 GTTATAATATTTATTAAT
28934241 GTTATAATATTTATTAAT
1 GTTATAATATTTATTAAT
28934259 TTTTAGGTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (18 bp):
GTTATAATATTTATTAAT
Found at i:28934591 original size:126 final size:126
Alignment explanation
Indices: 28934356--28934740 Score: 337
Period size: 126 Copynumber: 3.0 Consensus size: 126
28934346 AGTCAACATT
* * * * * *
28934356 GTGTTGGACAAAGTCGACTCTTATTTAAGTGTTGCCTTAGGCATTCATATCTCAGCCCTTATACA
1 GTGTTGGAAAAAGTCGAATCTTATTTAAGTGTTGCCTTAGGCATGCATATCACAACACTTATACA
* * *
28934421 AAGAGTTGGCCTAAGTGTATGTCGACAAGTCTGTCCCAACACTTAGGAAAGTGTCGGCTTA
66 AAGAGTTGGCCTAAGTGTATGTCGACAAGTCTATCCAAACACTTAAGAAAGTGTCGGCTTA
* * *
28934482 GTGTTGGAAAAAGTCGAATCTTATTTGAGTGTTGCCTTAGGCGTGCATTTCACAACACTTATACA
1 GTGTTGGAAAAAGTCGAATCTTATTTAAGTGTTGCCTTAGGCATGCATATCACAACACTTATACA
* * *
28934547 AAGAGTTGG-CTAAAGTGTATGTC-AGGAAGTCTATCCAAATACTTAAGAAAGTTTCAGGCCAAA
66 AAGAGTTGGCCT-AAGTGTATGTCGA-CAAGTCTATCCAAACACTTAAGAAAGTGTC-GG-C---
28934610 AGTGTCAACATA
124 ----T-----TA
* * * * * *
28934622 GTATTGGACAAAGTCGACTCTTATTTAAGTGTTGCCTTACGCATGCATATCCCAACCCTTATACA
1 GTGTTGGAAAAAGTCGAATCTTATTTAAGTGTTGCCTTAGGCATGCATATCACAACACTTATACA
* * * * * * *
28934687 AAGACTT-GCCAAAATGTATGTCTG-CAAATCTAGCCCAACACTTAGGAAAGTGTC
66 AAGAGTTGGCCTAAGTGTATGTC-GACAAGTCTATCCAAACACTTAAGAAAGTGTC
28934741 AGCCCAAAAG
Statistics
Matches: 206, Mismatches: 34, Indels: 25
0.78 0.13 0.09
Matches are distributed among these distances:
125 3 0.01
126 100 0.49
127 2 0.01
128 1 0.00
135 1 0.00
139 34 0.17
140 65 0.32
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (126 bp):
GTGTTGGAAAAAGTCGAATCTTATTTAAGTGTTGCCTTAGGCATGCATATCACAACACTTATACA
AAGAGTTGGCCTAAGTGTATGTCGACAAGTCTATCCAAACACTTAAGAAAGTGTCGGCTTA
Found at i:28934779 original size:139 final size:139
Alignment explanation
Indices: 28934483--28934888 Score: 507
Period size: 139 Copynumber: 2.9 Consensus size: 139
28934473 GTCGGCTTAG
* * * * *
28934483 TGTTGGAAAAAGTCGAATCTTATTTGAGTGTTGCCTTAGGCGTGCATTTCACAACACTTATACAA
1 TGTTGGAAAAAGTCGACTCTTATTTAAGTGTTGCCTTAGGCATGCATATC-CAACCCTTATACAA
* * * * * * * * *
28934548 AGAGTTGGCTAAAGTGTATGTCAGGAAGTCTATCCAAATACTTAAGAAAGTTTCAGGCCAAAAGT
65 AGACTTGGCCAAAGTGTATGTCTGCAAGTCTATCCCAACACTTAGGAAAGTGTCAGCCCAAAAGT
*
28934613 GTCAACATAG
130 GTCAACATAA
* * *
28934623 TATTGGACAAAGTCGACTCTTATTTAAGTGTTGCCTTACGCATGCATATCCCAACCCTTATACAA
1 TGTTGGAAAAAGTCGACTCTTATTTAAGTGTTGCCTTAGGCATGCATAT-CCAACCCTTATACAA
* * *
28934688 AGACTT-GCCAAAATGTATGTCTGCAAATCTAGCCCAACACTTAGGAAAGTGTCAGCCCAAAAGT
65 AGACTTGGCCAAAGTGTATGTCTGCAAGTCTATCCCAACACTTAGGAAAGTGTCAGCCCAAAAGT
28934752 GTCAACATAA
130 GTCAACATAA
* *
28934762 TGTTGGATAAAGCCGACTCTTATTTAAGTGTTGCCTTAGGCATGCATAT----CCCTTATACAAA
1 TGTTGGAAAAAGTCGACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCCAACCCTTATACAAA
* * * * *
28934823 GACTTGGCCAAAGCGTATGTCTGTAAGTCTATCCCAACACTTAGGAAACTGTCGGCTCAAAAGTG
66 GACTTGGCCAAAGTGTATGTCTGCAAGTCTATCCCAACACTTAGGAAAGTGTCAGCCCAAAAGTG
28934888 T
131 T
28934889 TGTCTTAGGA
Statistics
Matches: 231, Mismatches: 33, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
134 17 0.07
135 52 0.23
139 101 0.44
140 60 0.26
141 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (139 bp):
TGTTGGAAAAAGTCGACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCCAACCCTTATACAAA
GACTTGGCCAAAGTGTATGTCTGCAAGTCTATCCCAACACTTAGGAAAGTGTCAGCCCAAAAGTG
TCAACATAA
Found at i:28938827 original size:35 final size:35
Alignment explanation
Indices: 28938771--28938922 Score: 169
Period size: 35 Copynumber: 4.3 Consensus size: 35
28938761 ACTCCCTGTT
* * * * *
28938771 TTGGTGTGTTTCGGTTCGATTATCTCTTCTAAGCA
1 TTGGTGTGTTTTGGATGGATTAGCTCTTTTAAGCA
* **
28938806 TTGGTGTGTTTTGGATGGATTATCTCTTTTGTGCA
1 TTGGTGTGTTTTGGATGGATTAGCTCTTTTAAGCA
* *
28938841 TTGATGTGTTTAGGATGGATTAGCTCTTTTAAGCA
1 TTGGTGTGTTTTGGATGGATTAGCTCTTTTAAGCA
* * *
28938876 TTGGTGTGTTTTAGATGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTTTGGATGGATTAGCTCTTTTAAGCA
*
28938911 TCTAGTGTGTTT
1 T-TGGTGTGTTT
28938923 GGTTGGAATA
Statistics
Matches: 99, Mismatches: 17, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
35 90 0.91
36 9 0.09
ACGTcount: A:0.16, C:0.11, G:0.26, T:0.47
Consensus pattern (35 bp):
TTGGTGTGTTTTGGATGGATTAGCTCTTTTAAGCA
Found at i:28941110 original size:138 final size:139
Alignment explanation
Indices: 28940919--28941231 Score: 438
Period size: 138 Copynumber: 2.3 Consensus size: 139
28940909 AAAATATTTT
* * * *
28940919 TATTCTTTCCAAAAGAATATTAACTTCCACGTCTTTT-ATATTTTGACCGAAATTAATTAATATA
1 TATTCTTTCCAAAAGAATATTAATTTCCATGT-TTTTAATATTTTGACCAAAATTAACTAATATA
* *
28940983 ACTATTTATTTTAATAAA-TTCG-ACAAAATATATACA-ATTAATATTTTGTATGAATCAAATTC
65 ACTATTTATATTAATAAATTTCGTA-AAAATATATA-ATATTAATATTTTGTATAAATCAAATTC
* *
28941045 ATATGTTAGTTA
128 ATATATTAATTA
* *
28941057 TATTTTTTCCAAAAGAATATTAATTTCCTTGTTTTTAATATTTTGACCAAAATTAACTAATATAA
1 TATTCTTTCCAAAAGAATATTAATTTCCATGTTTTTAATATTTTGACCAAAATTAACTAATATAA
* * *
28941122 TTGTTTATATTAATAAATTTGGTAAAAATATATAATATTAATATTTTGTATAAATCAAATTCATA
66 CTATTTATATTAATAAATTTCGTAAAAATATATAATATTAATATTTTGTATAAATCAAATTCATA
28941187 TATTAATTA
131 TATTAATTA
*
28941196 TATTCTTTCCAAAA-AATATTAATTTCCATGTCTTTA
1 TATTCTTTCCAAAAGAATATTAATTTCCATGTTTTTA
28941232 TTTGTGTACA
Statistics
Matches: 155, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
137 4 0.03
138 89 0.57
139 61 0.39
140 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (139 bp):
TATTCTTTCCAAAAGAATATTAATTTCCATGTTTTTAATATTTTGACCAAAATTAACTAATATAA
CTATTTATATTAATAAATTTCGTAAAAATATATAATATTAATATTTTGTATAAATCAAATTCATA
TATTAATTA
Found at i:28975644 original size:28 final size:28
Alignment explanation
Indices: 28975568--28975642 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
28975558 CTGAGTGGGC
*
28975568 CACACGGGCGTGTGGGCCCATACGGGCA
1 CACACGGGCGTGTGGGCCCATACAGGCA
*
28975596 CACACGGGCATGTGGGCCCATACAGGCA
1 CACACGGGCGTGTGGGCCCATACAGGCA
*
28975624 CACACGGGTGTGTAGGGCC
1 CACACGGGCGTGT-GGGCC
28975643 ATTTTTACTG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 37 0.88
29 5 0.12
ACGTcount: A:0.20, C:0.31, G:0.37, T:0.12
Consensus pattern (28 bp):
CACACGGGCGTGTGGGCCCATACAGGCA
Found at i:28986865 original size:18 final size:16
Alignment explanation
Indices: 28986834--28986870 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 16
28986824 CCCTTGCTGA
28986834 TCATTCCACTCATCCC
1 TCATTCCACTCATCCC
28986850 TCATTCACATCTCATCCC
1 TCATTC-CA-CTCATCCC
28986868 TCA
1 TCA
28986871 CACTCTCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 2 0.11
18 11 0.58
ACGTcount: A:0.22, C:0.46, G:0.00, T:0.32
Consensus pattern (16 bp):
TCATTCCACTCATCCC
Found at i:28988401 original size:148 final size:148
Alignment explanation
Indices: 28988133--28988428 Score: 529
Period size: 148 Copynumber: 2.0 Consensus size: 148
28988123 CATGGACCGG
*
28988133 CTAGGGGTAATAATGGTATGGGCCGAGGACAGAGAGCACCGGGCAGAGGTGCTAATCAGACTGAG
1 CTAGGGGTAATAATGGTATGGGCCGAGGACAGAGAGCACCAGGCAGAGGTGCTAATCAGACTGAG
*
28988198 GCGAGGCAACCTGCACTAGTTTATGCTGCTCAACGCCGAGAGGACAGAGTCACCCCTGACGTAAT
66 GCGAGGCAACCTGCACTAGTTTATGCTGCTCAACGCCGAGAGGACAGAGACACCCCTGACGTAAT
28988263 CATGAGTACGTTCTTTAT
131 CATGAGTACGTTCTTTAT
*
28988281 CTAGGGGTAATAATGGTATGGGCCGAGGACAGAGAGCACCAGGTAGAGGTGCTAATCAGACTGAG
1 CTAGGGGTAATAATGGTATGGGCCGAGGACAGAGAGCACCAGGCAGAGGTGCTAATCAGACTGAG
* * *
28988346 GCGAGGCAAGCTGTACTGGTTTATGCTGCTCAACGCCGAGAGGACAGAGACACCCCTGACGTAAT
66 GCGAGGCAACCTGCACTAGTTTATGCTGCTCAACGCCGAGAGGACAGAGACACCCCTGACGTAAT
*
28988411 CATGGGTACGTTCTTTAT
131 CATGAGTACGTTCTTTAT
28988429 TTTTTATTTT
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
148 141 1.00
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (148 bp):
CTAGGGGTAATAATGGTATGGGCCGAGGACAGAGAGCACCAGGCAGAGGTGCTAATCAGACTGAG
GCGAGGCAACCTGCACTAGTTTATGCTGCTCAACGCCGAGAGGACAGAGACACCCCTGACGTAAT
CATGAGTACGTTCTTTAT
Found at i:29000812 original size:28 final size:29
Alignment explanation
Indices: 29000749--29000813 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 29
29000739 ACTACATTGA
*
29000749 TAGTCACCTAATTATTAGTAAATTTTTTTT
1 TAGTCACCTAATTATTAGT-AATTTTGTTT
*
29000779 TGGTCATCC-AATTATTAGT-ATTTTGTTT
1 TAGTCA-CCTAATTATTAGTAATTTTGTTT
29000807 TAGTCAC
1 TAGTCAC
29000814 TCAACTATGA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 1 0.03
28 13 0.42
30 15 0.48
31 2 0.06
ACGTcount: A:0.26, C:0.12, G:0.11, T:0.51
Consensus pattern (29 bp):
TAGTCACCTAATTATTAGTAATTTTGTTT
Found at i:29000899 original size:31 final size:32
Alignment explanation
Indices: 29000842--29000908 Score: 109
Period size: 31 Copynumber: 2.1 Consensus size: 32
29000832 AAAATAGTCT
*
29000842 CCCAACTATTCAACTTTTCTCTTTTTTGGTCA
1 CCCAACTATTCAAATTTTCTCTTTTTTGGTCA
*
29000874 CCCAGCTATTCAAATTTT-TCTTTTTTGGTCA
1 CCCAACTATTCAAATTTTCTCTTTTTTGGTCA
29000905 CCCA
1 CCCA
29000909 TCGTTAATTG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
31 17 0.52
32 16 0.48
ACGTcount: A:0.19, C:0.28, G:0.07, T:0.45
Consensus pattern (32 bp):
CCCAACTATTCAAATTTTCTCTTTTTTGGTCA
Found at i:29001819 original size:29 final size:28
Alignment explanation
Indices: 29001759--29001816 Score: 82
Period size: 27 Copynumber: 2.0 Consensus size: 28
29001749 CGAATTTTAA
*
29001759 TATTTTATTTTTATTTTTACTTTAAAAAT
1 TATTTTA-TTTTATTTTTAATTTAAAAAT
29001788 TATTTTA-TTTATTTTTAGATTTAAAAAT
1 TATTTTATTTTATTTTTA-ATTTAAAAAT
29001816 T
1 T
29001817 TATATAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 10 0.37
28 10 0.37
29 7 0.26
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (28 bp):
TATTTTATTTTATTTTTAATTTAAAAAT
Found at i:29001828 original size:29 final size:27
Alignment explanation
Indices: 29001769--29001829 Score: 68
Period size: 29 Copynumber: 2.2 Consensus size: 27
29001759 TATTTTATTT
* * * *
29001769 TTATTTTTACTTTAAAAATTATTTTAT
1 TTATTTTTAATTTAAAAATTATATAAA
29001796 TTATTTTTAGATTTAAAAATTTATATAAA
1 TTATTTTTA-ATTTAAAAA-TTATATAAA
29001825 TTATT
1 TTATT
29001830 AACAGTATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 9 0.32
28 8 0.29
29 11 0.39
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (27 bp):
TTATTTTTAATTTAAAAATTATATAAA
Found at i:29004571 original size:20 final size:19
Alignment explanation
Indices: 29004526--29004577 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
29004516 CATATCACCG
* *
29004526 TCTCTTTGTTTCATTCCTT
1 TCTCTCTGTTTCACTCCTT
*
29004545 CCGTCTCTGTTTCACTCTCTT
1 TC-TCTCTGTTTCACTC-CTT
*
29004566 TCTCTCTCTTTC
1 TCTCTCTGTTTC
29004578 TCAGTCTTCA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 1 0.04
20 21 0.81
21 4 0.15
ACGTcount: A:0.04, C:0.35, G:0.06, T:0.56
Consensus pattern (19 bp):
TCTCTCTGTTTCACTCCTT
Found at i:29011311 original size:16 final size:16
Alignment explanation
Indices: 29011282--29011315 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
29011272 GTAAAATAAT
*
29011282 ATATTTTATGTTAAAA
1 ATATTCTATGTTAAAA
*
29011298 ATATTCTATTTTAAAA
1 ATATTCTATGTTAAAA
29011314 AT
1 AT
29011316 TATTTAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (16 bp):
ATATTCTATGTTAAAA
Found at i:29014074 original size:3 final size:3
Alignment explanation
Indices: 29014068--29014099 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
29014058 ATTATTGAGT
*
29014068 TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
29014100 GCATTTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:29014114 original size:9 final size:10
Alignment explanation
Indices: 29014052--29014113 Score: 56
Period size: 12 Copynumber: 5.9 Consensus size: 10
29014042 TCCTATCATT
29014052 TTATTTATTA
1 TTATTTATTA
29014062 TTGAGTTTATTA
1 TT-A-TTTATTA
29014074 TTA-TTATTA
1 TTATTTATTA
29014083 TTATTATCATTA
1 TTATT-T-ATTA
*
29014095 TTATTGCATT-
1 TTATT-TATTA
29014105 TTATTTATT
1 TTATTTATT
29014114 TATTTGTACC
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
9 12 0.27
10 8 0.18
11 6 0.14
12 18 0.41
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.65
Consensus pattern (10 bp):
TTATTTATTA
Found at i:29026819 original size:44 final size:43
Alignment explanation
Indices: 29026754--29027077 Score: 209
Period size: 44 Copynumber: 7.5 Consensus size: 43
29026744 AGAATTGCAG
* * *
29026754 ATCTTATCTCCCTG-AGATTACAGCGGAGCAGATTGAATATAGTA
1 ATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTGAAGACAG-A
* ** *
29026798 ATCCTATCTCCCTGAAGTTACAGTGGAGTGGATT--A-A-AGG
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAGA
* * * * * *
29026837 ATCTTATCTCTCTGAAGTTACAGTAGAGCGGATCGCA-CCAG-
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAGA
* * * * * *
29026878 GTCTTATTTCCCTG-AGATTATAGTGGAACAGACTAAAGA-ATGTCA
1 ATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTGAAGACA-G--A
* * *
29026923 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAGGCCAGAA
1 -ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAG-A
* **
29026968 ATCTTATCTCCCTG-AGATTACAGCGGAGCAGATTGAAGACACT
1 ATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTGAAGACAGA
* * * * * *
29027011 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTCAAATAAAGG
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATT-GAAGACAGA
29027055 ATCTTATCTCCCTGAAGTTACAG
1 ATCTTATCTCCCTGAAGTTACAG
29027078 CAAAGTAGAT
Statistics
Matches: 216, Mismatches: 48, Indels: 32
0.73 0.16 0.11
Matches are distributed among these distances:
39 29 0.13
40 4 0.02
41 26 0.12
42 4 0.02
43 29 0.13
44 90 0.42
45 3 0.01
46 29 0.13
47 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (43 bp):
ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAGA
Found at i:29027193 original size:218 final size:214
Alignment explanation
Indices: 29026754--29027159 Score: 469
Period size: 218 Copynumber: 1.9 Consensus size: 214
29026744 AGAATTGCAG
* * *
29026754 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAATATAGTAATCCTATCTCCCTGAAGTTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGACACTAATCCTATCTCCCTGAAGTTAC
* * * * * *
29026819 AGTGGAGTGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGCGGATCGCACCAGGTCTTA
66 AGTGGAGCGGATTAAAGGATCTTATCTCCCTGAAGTTACAGCAAAGCAGATCGCACCAAGTCTTA
* ** * * * * * *
29026884 TTTCCCTGAGATTATAGTGGAACAGACTAAAGAATGTCAGATCTTATCTCCCTGAGGTTACAGTG
131 TTTCCCTGAGATTACAGTGGAACAGACTAAAGAATAACAGATCATACCCCCCTAAAGTTACAGCG
** *
29026949 GAGCAGATTGAGGCCAGAA
196 GAGCAGACAGAGGACAGAA
29026968 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGACACT-ATCCTATCTCCCTGAAGTTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGACACTAATCCTATCTCCCTGAAGTTAC
* * *
29027032 AGTGGAGCGGATTCAAATAAAGGATCTTATCTCCCTGAAGTTACAGCAAAGTAGATCGTATCAAG
66 AGTGGAGCGGA-T----TAAAGGATCTTATCTCCCTGAAGTTACAGCAAAGCAGATCGCACCAAG
* * * *
29027097 TCTTATTTCCCTGAAGA-TGCAGTGGAATAGACTGAA-AATAACA-AGTCATGCCCCCCTAAAGT
126 TCTTATTTCCCTG-AGATTACAGTGGAACAGACTAAAGAATAACAGA-TCATACCCCCCTAAAGT
29027159 T
189 T
29027160 GTAGCGGGGC
Statistics
Matches: 161, Mismatches: 24, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
213 31 0.19
214 41 0.25
216 1 0.01
217 17 0.11
218 68 0.42
219 3 0.02
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (214 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGACACTAATCCTATCTCCCTGAAGTTAC
AGTGGAGCGGATTAAAGGATCTTATCTCCCTGAAGTTACAGCAAAGCAGATCGCACCAAGTCTTA
TTTCCCTGAGATTACAGTGGAACAGACTAAAGAATAACAGATCATACCCCCCTAAAGTTACAGCG
GAGCAGACAGAGGACAGAA
Found at i:29038739 original size:78 final size:78
Alignment explanation
Indices: 29038608--29038763 Score: 267
Period size: 78 Copynumber: 2.0 Consensus size: 78
29038598 AAAACCTTCA
* * *
29038608 GGTTGTGTCATGTACACATCCTCTTCAAGTTTCTCATTAAGAAAAGTTTTTTTGACGTCCATCTG
1 GGTTGTGTCATGTACACATCCTCTTCAAGTTTCCCATTAAGAAAAGCTGTTTTGACGTCCATCTG
*
29038673 CCAGATTTTATAG
66 CCAGATTTCATAG
*
29038686 GGTTGTGTCATGTACACATCCTCTTCAAGTTTCCCATTAAGGAAAGCTGTTTTGACGTCCATCTG
1 GGTTGTGTCATGTACACATCCTCTTCAAGTTTCCCATTAAGAAAAGCTGTTTTGACGTCCATCTG
29038751 CCAGATTTCATAG
66 CCAGATTTCATAG
29038764 TCATGAAATG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (78 bp):
GGTTGTGTCATGTACACATCCTCTTCAAGTTTCCCATTAAGAAAAGCTGTTTTGACGTCCATCTG
CCAGATTTCATAG
Found at i:29047194 original size:6 final size:6
Alignment explanation
Indices: 29047183--29047217 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
29047173 GATTTCTAAA
29047183 ATTATC ATTATC ATTATC ATTATC ATTATC ATTAT
1 ATTATC ATTATC ATTATC ATTATC ATTATC ATTAT
29047218 AATTTAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.51
Consensus pattern (6 bp):
ATTATC
Found at i:29048484 original size:22 final size:22
Alignment explanation
Indices: 29048448--29048499 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
29048438 AATTTAAACT
*
29048448 AAAAATGTATCAAACTTAATATA
1 AAAAATTTATCAAACTTAATA-A
*
29048471 AAAAATTTAT-AAACTTTATAA
1 AAAAATTTATCAAACTTAATAA
29048492 AAGAAATT
1 AA-AAATT
29048500 AAGCAAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 3 0.12
22 14 0.54
23 9 0.35
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.33
Consensus pattern (22 bp):
AAAAATTTATCAAACTTAATAA
Found at i:29052129 original size:22 final size:21
Alignment explanation
Indices: 29052088--29052131 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
29052078 AAGGTTGATA
*
29052088 TTAAATTAAAACATTCCCTTT
1 TTAAATTAAAACACTCCCTTT
29052109 TTAACATTAAAAGCACT-CCTTT
1 TTAA-ATTAAAA-CACTCCCTTT
29052131 T
1 T
29052132 ACCATCCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 4 0.20
22 13 0.65
23 3 0.15
ACGTcount: A:0.36, C:0.20, G:0.02, T:0.41
Consensus pattern (21 bp):
TTAAATTAAAACACTCCCTTT
Found at i:29056065 original size:54 final size:54
Alignment explanation
Indices: 29056007--29056117 Score: 213
Period size: 54 Copynumber: 2.1 Consensus size: 54
29055997 AATTCATGTT
*
29056007 AATTTTCAATCCACATATTATTATGAATATGCCACAAATACACCAATTATGCCA
1 AATTTTCAATCCACATATCATTATGAATATGCCACAAATACACCAATTATGCCA
29056061 AATTTTCAATCCACATATCATTATGAATATGCCACAAATACACCAATTATGCCA
1 AATTTTCAATCCACATATCATTATGAATATGCCACAAATACACCAATTATGCCA
29056115 AAT
1 AAT
29056118 GAATCAACTA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.31
Consensus pattern (54 bp):
AATTTTCAATCCACATATCATTATGAATATGCCACAAATACACCAATTATGCCA
Found at i:29059103 original size:16 final size:17
Alignment explanation
Indices: 29059084--29059116 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
29059074 TGGCTTCATA
29059084 GTGG-TTTTTTTTAATT
1 GTGGTTTTTTTTTAATT
29059100 GTGGTTTTTTTTTAATT
1 GTGGTTTTTTTTTAATT
29059117 TCAAAATATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.12, C:0.00, G:0.18, T:0.70
Consensus pattern (17 bp):
GTGGTTTTTTTTTAATT
Found at i:29060208 original size:16 final size:16
Alignment explanation
Indices: 29060187--29060217 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
29060177 TACCCATACC
*
29060187 CTGAAATGATCCAAAT
1 CTGAAATGACCCAAAT
29060203 CTGAAATGACCCAAA
1 CTGAAATGACCCAAA
29060218 CTTAAAATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.23, G:0.13, T:0.19
Consensus pattern (16 bp):
CTGAAATGACCCAAAT
Found at i:29066917 original size:643 final size:645
Alignment explanation
Indices: 29065683--29067370 Score: 2546
Period size: 662 Copynumber: 2.6 Consensus size: 645
29065673 CAGTCTTTAT
* * *
29065683 TTATTCTTTTATTAAATATATGTATATTTTTATTCTCGTTCGATCTTGTGATTTAAATAAATATT
1 TTATTATTTTATTATATATATGTATATTTTTGTTCTCGTTCGATCTTGTGATTTAAATAAATATT
* * *
29065748 TTATATTACTGTTTATTTTACCAACGTGTGTGAAAGACCATATTCACTTCAATTTAAAGCCAAAT
66 TTATATTACTGTTTATTTTACTAACGTGTGTGCAAGATCATATTCACTTCAATTTAAAGCCAAAT
* * * *
29065813 TTGATTTTCTTTTCCGTTTTCACCATTTATGACTCATTCGCTCCATTAGGTCTTGCTAATTTCCC
131 TTGATTTTCCTTTCCGTTTTCACCATTTATGACTCATTCCCTCAATTAGGTCTTGTTAATTTCCC
* * *
29065878 ATTTTCCTAAGCTTTTGCTACTTTTAGTGGGATTT-ATTCAAGAATCGCATTTAAAATTTGGGAA
196 ATTTTCCTAAGCTTTTGCTACTTTTAGTGGGATTTAACTCAAGAATCACATTTAAAATTT-GAAA
* *
29065942 AAGAACTAAGTT-TTTTAGCTTTATGAAATTCAATGCAATGAAGTGTTTTCACTATTTCAAGGAC
260 AAGAATTGAGTTCTTTTAGCTTTATGAAATTCAATGCAATGAAGTGTTTTCACTATTTCAAGGAC
* *
29066006 AAGTATTGAAGCAAGGGCAAAATATTAGCCTCAGAATTAAAAGAATGAAGGAACGAAATCAAAGG
325 AAGTTTTGAAGCAAGGG-AAAATATTAGCCTCAGAATTGAAAGAATGAAGGAACGAAATCAAAGG
* * * *
29066071 AACATTCAAAGGCATTTTTCAAACTGTTTTTGGTGATAGCCGAAGGCAAGACTATTGTTCGTTGA
389 AACATTCAAAGGCATTTTTCAAACTATTTTCGGTGATAGACGAAGGCAAGACTACTGTTCGTTGA
* *
29066136 TCACTGTAGCCGTGCTACTACCGTGCTCATCTTATTGTTGTGTTCTAGGAGACAATCGACCAACG
454 TCACTGCAGCCGTGCTACTACCGTGCTCATCTTATTGTTGTATTCTAGGAGACAATCGACCAACG
* * *
29066201 TTTCTCCAGCACCAAAGAAGCAGTCGGATTTATCTTAAGGAAACTGTGAAAATAGGCCTCAACTA
519 TTTCTCCAGCACCAAAGAAGCAGCCGAATCTATCTTAAGGAAACTGTGAAAATAGGCCTCAACTA
* *
29066266 CCAGTCCGTTTTTCCTGCCTACGTACGAGTATAATATTTCAATCCAGTC-TTTCT-TTC-TG
584 CCAGTCCGTTTTTCCTGCCTACCTACGAGTATAATATTTCAATCCAGTCTTTTCTATTCTTA
*
29066325 TTCTT-TTTTATTATATATATGTATATTTTTGTTCTCGTTCGATCTTGTGATTTAAATAAATATT
1 TTATTATTTTATTATATATATGTATATTTTTGTTCTCGTTCGATCTTGTGATTTAAATAAATATT
*
29066389 TTATATTACTATTTATTTTACTAACGTGTGTGCAAGATCATATTCACTTCAATTTAAAGCCAAAT
66 TTATATTACTGTTTATTTTACTAACGTGTGTGCAAGATCATATTCACTTCAATTTAAAGCCAAAT
* *
29066454 TTGATTTTCCTTTCCATTTTCACCATTTATGACTCATTCCCTCGATTAGGTCTTGTTAATTTCCC
131 TTGATTTTCCTTTCCGTTTTCACCATTTATGACTCATTCCCTCAATTAGGTCTTGTTAATTTCCC
* *
29066519 ATTTTCCTAAGCTTTTGCTACTTTTAGTGGGATTTAACTCAAGAATCATATTTAAAATTTGATAC
196 ATTTTCCTAAGCTTTTGCTACTTTTAGTGGGATTTAACTCAAGAATCACATTTAAAATTTGA-AA
* *
29066584 AAGAATTGAGTTCTTTTAGCTTTATGAAATTCAATGTAATGAAGTGTTTTCACTATTTCAGGGAC
260 AAGAATTGAGTTCTTTTAGCTTTATGAAATTCAATGCAATGAAGTGTTTTCACTATTTCAAGGAC
* * * *
29066649 AAGTTTTGAAGCAAAGGAAAACTATTAGCCTCAGAAATGAAAGAATGAATGAAGGAAATCAAAGG
325 AAGTTTTGAAGCAAGGGAAAA-TATTAGCCTCAGAATTGAAAGAATGAAGGAACGAAATCAAAGG
* *
29066714 AACATTCAAAGGCGTTTTTCAAACTATTTTCGGTGATAGACGAAGGCAAGGCTACTGTTCGTTGA
389 AACATTCAAAGGCATTTTTCAAACTATTTTCGGTGATAGACGAAGGCAAGACTACTGTTCGTTGA
** * * *
29066779 TCACTGCAGTTGTGCTACTATCGTGCTCATCTTGTTGTTGTA-TCTTGGGAGACAATCGACCAAC
454 TCACTGCAGCCGTGCTACTACCGTGCTCATCTTATTGTTGTATTC-TAGGAGACAATCGACCAAC
* *
29066843 GTTTCTCCAGCACCAAAGGAGC-GACCGAATCTGTCTTAAGGAAACTGTGAAAATAGGCCTCAAC
518 GTTTCTCCAGCACCAAAGAAGCAG-CCGAATCTATCTTAAGGAAACTGTGAAAATAGGCCTCAAC
* * * *
29066907 TACTAGTCCGTTTTTCCTGCCTACCTATGAGTATAATATTTCGATCTAGTCTTTATTTCTATTCT
582 TACCAGTCCGTTTTTCCTGCCTACCTACGAGTATAATATTTCAATCCAGTC--T-TTTCTATTC-
29066972 TTATTATTATTA
643 ---------TTA
*
29066984 TTATTATTATTATTATTATATATGTATATTTTTGTTCTCGTTTGATCTTGTGATTTAAATAAATA
1 TTATTATT-TTATTA-TATATATGTATATTTTTGTTCTCGTTCGATCTTGTGATTTAAATAAATA
* *
29067049 TTTTATATTATTGTTTATTTTACTAACATGTGTGCAAGATCATATTCACTTCAATTTAAAGCCAA
64 TTTTATATTACTGTTTATTTTACTAACGTGTGTGCAAGATCATATTCACTTCAATTTAAAGCCAA
29067114 ATTTGATTTTCCTTTCCGTTTTCACCATTTATGACTCATTCCCTCAATTAGGTCTTGTTAATTTC
129 ATTTGATTTTCCTTTCCGTTTTCACCATTTATGACTCATTCCCTCAATTAGGTCTTGTTAATTTC
* * *
29067179 CCATTTTTCTAAGCTTTTGCTACTTTTAGTGGGATTTAGCTTAAGAATCACATTTAAAATTTGGA
194 CCATTTTCCTAAGCTTTTGCTACTTTTAGTGGGATTTAACTCAAGAATCACATTTAAAATTT-GA
*
29067244 AAAAGAATCGAGTTCTTTTAGCTTTATGAAATTCAATGCAATGAAGTGTTTTCACTATTTCAAGG
258 AAAAGAATTGAGTTCTTTTAGCTTTATGAAATTCAATGCAATGAAGTGTTTTCACTATTTCAAGG
* * *
29067309 ATAAGTTTTGAAGCAAGGGAAAAATATTAGCCTCAGAATTGAAAGAATGGAGGAACAAAATC
323 ACAAGTTTTGAAGCAAGGG-AAAATATTAGCCTCAGAATTGAAAGAATGAAGGAACGAAATC
29067371 TGTTAGAGTT
Statistics
Matches: 946, Mismatches: 73, Indels: 34
0.90 0.07 0.03
Matches are distributed among these distances:
641 214 0.23
642 43 0.05
643 320 0.34
647 5 0.01
648 3 0.00
659 5 0.01
660 2 0.00
661 6 0.01
662 342 0.36
663 6 0.01
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (645 bp):
TTATTATTTTATTATATATATGTATATTTTTGTTCTCGTTCGATCTTGTGATTTAAATAAATATT
TTATATTACTGTTTATTTTACTAACGTGTGTGCAAGATCATATTCACTTCAATTTAAAGCCAAAT
TTGATTTTCCTTTCCGTTTTCACCATTTATGACTCATTCCCTCAATTAGGTCTTGTTAATTTCCC
ATTTTCCTAAGCTTTTGCTACTTTTAGTGGGATTTAACTCAAGAATCACATTTAAAATTTGAAAA
AGAATTGAGTTCTTTTAGCTTTATGAAATTCAATGCAATGAAGTGTTTTCACTATTTCAAGGACA
AGTTTTGAAGCAAGGGAAAATATTAGCCTCAGAATTGAAAGAATGAAGGAACGAAATCAAAGGAA
CATTCAAAGGCATTTTTCAAACTATTTTCGGTGATAGACGAAGGCAAGACTACTGTTCGTTGATC
ACTGCAGCCGTGCTACTACCGTGCTCATCTTATTGTTGTATTCTAGGAGACAATCGACCAACGTT
TCTCCAGCACCAAAGAAGCAGCCGAATCTATCTTAAGGAAACTGTGAAAATAGGCCTCAACTACC
AGTCCGTTTTTCCTGCCTACCTACGAGTATAATATTTCAATCCAGTCTTTTCTATTCTTA
Found at i:29066980 original size:3 final size:3
Alignment explanation
Indices: 29066972--29067002 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
29066962 TTTCTATTCT
29066972 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
29067003 ATATGTATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:29069439 original size:28 final size:28
Alignment explanation
Indices: 29069399--29069456 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
29069389 ATTCTAAGAG
29069399 ATTGCTTGCAAGTCAAGTTAAACAAAAT
1 ATTGCTTGCAAGTCAAGTTAAACAAAAT
29069427 ATTGCTTGCAAGTCAAGTTAAACAAAAT
1 ATTGCTTGCAAGTCAAGTTAAACAAAAT
29069455 AT
1 AT
29069457 ATTTTGAGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (28 bp):
ATTGCTTGCAAGTCAAGTTAAACAAAAT
Found at i:29069720 original size:317 final size:317
Alignment explanation
Indices: 29069145--29069778 Score: 1268
Period size: 317 Copynumber: 2.0 Consensus size: 317
29069135 TTTCATTGAA
29069145 GAGAGGTTATCTTTTGGATGTAGGTTTTGAAAAGTTAGGGCACTATGTTCGTGAAAATCAGACCC
1 GAGAGGTTATCTTTTGGATGTAGGTTTTGAAAAGTTAGGGCACTATGTTCGTGAAAATCAGACCC
29069210 GGGTTAGTTTTGATTTGGCAGTGTAAAGGCCGAAGGCTATAAGTCTTCCAGCTTTTAAGCATAGA
66 GGGTTAGTTTTGATTTGGCAGTGTAAAGGCCGAAGGCTATAAGTCTTCCAGCTTTTAAGCATAGA
29069275 TTCGACTCAGTTAATTCCCTGCATAGTTCAAGATAGGCCTGTCGTGGGCTTTGACAAAGATGGCG
131 TTCGACTCAGTTAATTCCCTGCATAGTTCAAGATAGGCCTGTCGTGGGCTTTGACAAAGATGGCG
29069340 TTGTAAGAATTCGTGTCTAGGTGGAGATTGTTAGAGTTGTGTGACCCAAATTCTAAGAGATTGCT
196 TTGTAAGAATTCGTGTCTAGGTGGAGATTGTTAGAGTTGTGTGACCCAAATTCTAAGAGATTGCT
29069405 TGCAAGTCAAGTTAAACAAAATATTGCTTGCAAGTCAAGTTAAACAAAATATATTTT
261 TGCAAGTCAAGTTAAACAAAATATTGCTTGCAAGTCAAGTTAAACAAAATATATTTT
29069462 GAGAGGTTATCTTTTGGATGTAGGTTTTGAAAAGTTAGGGCACTATGTTCGTGAAAATCAGACCC
1 GAGAGGTTATCTTTTGGATGTAGGTTTTGAAAAGTTAGGGCACTATGTTCGTGAAAATCAGACCC
29069527 GGGTTAGTTTTGATTTGGCAGTGTAAAGGCCGAAGGCTATAAGTCTTCCAGCTTTTAAGCATAGA
66 GGGTTAGTTTTGATTTGGCAGTGTAAAGGCCGAAGGCTATAAGTCTTCCAGCTTTTAAGCATAGA
29069592 TTCGACTCAGTTAATTCCCTGCATAGTTCAAGATAGGCCTGTCGTGGGCTTTGACAAAGATGGCG
131 TTCGACTCAGTTAATTCCCTGCATAGTTCAAGATAGGCCTGTCGTGGGCTTTGACAAAGATGGCG
29069657 TTGTAAGAATTCGTGTCTAGGTGGAGATTGTTAGAGTTGTGTGACCCAAATTCTAAGAGATTGCT
196 TTGTAAGAATTCGTGTCTAGGTGGAGATTGTTAGAGTTGTGTGACCCAAATTCTAAGAGATTGCT
29069722 TGCAAGTCAAGTTAAACAAAATATTGCTTGCAAGTCAAGTTAAACAAAATATATTTT
261 TGCAAGTCAAGTTAAACAAAATATTGCTTGCAAGTCAAGTTAAACAAAATATATTTT
29069779 CTTTCTAGAA
Statistics
Matches: 317, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
317 317 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (317 bp):
GAGAGGTTATCTTTTGGATGTAGGTTTTGAAAAGTTAGGGCACTATGTTCGTGAAAATCAGACCC
GGGTTAGTTTTGATTTGGCAGTGTAAAGGCCGAAGGCTATAAGTCTTCCAGCTTTTAAGCATAGA
TTCGACTCAGTTAATTCCCTGCATAGTTCAAGATAGGCCTGTCGTGGGCTTTGACAAAGATGGCG
TTGTAAGAATTCGTGTCTAGGTGGAGATTGTTAGAGTTGTGTGACCCAAATTCTAAGAGATTGCT
TGCAAGTCAAGTTAAACAAAATATTGCTTGCAAGTCAAGTTAAACAAAATATATTTT
Found at i:29069756 original size:28 final size:28
Alignment explanation
Indices: 29069716--29069773 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
29069706 ATTCTAAGAG
29069716 ATTGCTTGCAAGTCAAGTTAAACAAAAT
1 ATTGCTTGCAAGTCAAGTTAAACAAAAT
29069744 ATTGCTTGCAAGTCAAGTTAAACAAAAT
1 ATTGCTTGCAAGTCAAGTTAAACAAAAT
29069772 AT
1 AT
29069774 ATTTTCTTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (28 bp):
ATTGCTTGCAAGTCAAGTTAAACAAAAT
Found at i:29071413 original size:15 final size:14
Alignment explanation
Indices: 29071392--29071429 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
29071382 TTGTTACAAA
29071392 AACTTTTCTTC-CTT
1 AACTTTTCTTCTC-T
29071406 AACGTTTTCTTCTCT
1 AAC-TTTTCTTCTCT
29071421 AACTTTTCT
1 AACTTTTCT
29071430 ATTTTTCTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.41
15 12 0.55
16 1 0.05
ACGTcount: A:0.16, C:0.26, G:0.03, T:0.55
Consensus pattern (14 bp):
AACTTTTCTTCTCT
Found at i:29071429 original size:14 final size:14
Alignment explanation
Indices: 29071392--29071429 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
29071382 TTGTTACAAA
29071392 AACTTTTCTTCCTT
1 AACTTTTCTTCCTT
29071406 AACGTTTTCTT-CTCT
1 AAC-TTTTCTTCCT-T
29071421 AACTTTTCT
1 AACTTTTCT
29071430 ATTTTTCTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.16, C:0.26, G:0.03, T:0.55
Consensus pattern (14 bp):
AACTTTTCTTCCTT
Found at i:29086428 original size:20 final size:22
Alignment explanation
Indices: 29086389--29086436 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 22
29086379 TAGAAACTGG
29086389 TAGAA-TTGTTATTCTAGAAAA
1 TAGAATTTGTTATTCTAGAAAA
29086410 TAGAATTTG-TATT-TAGAAAA
1 TAGAATTTGTTATTCTAGAAAA
29086430 TA-AATTT
1 TAGAATTT
29086437 TCACTGTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.19
20 9 0.35
21 9 0.35
22 3 0.12
ACGTcount: A:0.44, C:0.02, G:0.12, T:0.42
Consensus pattern (22 bp):
TAGAATTTGTTATTCTAGAAAA
Found at i:29086783 original size:16 final size:16
Alignment explanation
Indices: 29086764--29086794 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
29086754 TTAATTAATT
*
29086764 AATTAATTAATTTTCC
1 AATTAAGTAATTTTCC
29086780 AATTAAGTAATTTTC
1 AATTAAGTAATTTTC
29086795 TCTACCTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.10, G:0.03, T:0.48
Consensus pattern (16 bp):
AATTAAGTAATTTTCC
Found at i:29089442 original size:33 final size:33
Alignment explanation
Indices: 29089400--29089465 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
29089390 AATAAAGGGA
29089400 AAATTTCATTTCTTACATTGTTTTGGTGATAAT
1 AAATTTCATTTCTTACATTGTTTTGGTGATAAT
29089433 AAATTTCATTTCTTACATTGTTTTGGTGATAAT
1 AAATTTCATTTCTTACATTGTTTTGGTGATAAT
29089466 GCTGTCATTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.09, G:0.12, T:0.52
Consensus pattern (33 bp):
AAATTTCATTTCTTACATTGTTTTGGTGATAAT
Found at i:29091676 original size:25 final size:25
Alignment explanation
Indices: 29091617--29091679 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
29091607 TAGCTCTCAT
* *
29091617 GAGCTTTCTATTATATGGTTATTGC
1 GAGCTTCCTGTTATATGGTTATTGC
29091642 GAGCTTCCTGTTATATGGTTATTGC
1 GAGCTTCCTGTTATATGGTTATTGC
*
29091667 GGGCTTCCTGTTA
1 GAGCTTCCTGTTA
29091680 ATAGCTCTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.44
Consensus pattern (25 bp):
GAGCTTCCTGTTATATGGTTATTGC
Found at i:29091780 original size:25 final size:25
Alignment explanation
Indices: 29091752--29091843 Score: 98
Period size: 25 Copynumber: 3.6 Consensus size: 25
29091742 CTTATGAGTA
*
29091752 TCCCGA-TATATGGCTCTTTGGAGCT
1 TCCCGATTA-ATGGCTCTTCGGAGCT
* *
29091777 TCCCGATTAAAGGCTCTTCGTGAGTT
1 TCCCGATTAATGGCTCTTCG-GAGCT
*
29091803 TCCCGATTAATGGCTCTCCGGAGCT
1 TCCCGATTAATGGCTCTTCGGAGCT
*
29091828 TCCTG-TTACATGGCTC
1 TCCCGATTA-ATGGCTC
29091844 ACATGAGCTT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
24 3 0.05
25 30 0.53
26 24 0.42
ACGTcount: A:0.16, C:0.27, G:0.23, T:0.34
Consensus pattern (25 bp):
TCCCGATTAATGGCTCTTCGGAGCT
Found at i:29091817 original size:26 final size:26
Alignment explanation
Indices: 29091746--29091819 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
29091736 GTAGCTCTTA
* *
29091746 TGAGTATCCCGA-TATATGGCTCTTTG
1 TGAGTTTCCCGATTA-ATGGCTCTTCG
* *
29091772 -GAGCTTCCCGATTAAAGGCTCTTCG
1 TGAGTTTCCCGATTAATGGCTCTTCG
29091797 TGAGTTTCCCGATTAATGGCTCT
1 TGAGTTTCCCGATTAATGGCTCT
29091820 CCGGAGCTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 18 0.45
26 22 0.55
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
TGAGTTTCCCGATTAATGGCTCTTCG
Found at i:29091900 original size:24 final size:25
Alignment explanation
Indices: 29091846--29091907 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
29091836 CATGGCTCAC
29091846 ATGAGCTTCTCGTTATATAGCTCGA
1 ATGAGCTTCTCGTTATATAGCTCGA
* * *
29091871 AAGAGCTT-TCCGTTATGTA-CTCGT
1 ATGAGCTTCT-CGTTATATAGCTCGA
29091895 ATGAGCATTCTCG
1 ATGAGC-TTCTCG
29091908 AATACAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
24 10 0.33
25 19 0.63
26 1 0.03
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (25 bp):
ATGAGCTTCTCGTTATATAGCTCGA
Found at i:29093858 original size:17 final size:17
Alignment explanation
Indices: 29093836--29093909 Score: 60
Period size: 17 Copynumber: 4.3 Consensus size: 17
29093826 GAACTCACAA
*
29093836 GTGAGCTCTCAAGTTTG
1 GTGAGCTCACAAGTTTG
** *
29093853 GTGAGCTTGC-TGTCTTG
1 GTGAGCTCACAAGT-TTG
**
29093870 GTGAGCTCACATTTTTTG
1 GTGAGCTCACA-AGTTTG
*
29093888 GTGAGCTCACAATTTTG
1 GTGAGCTCACAAGTTTG
29093905 GTGAG
1 GTGAG
29093910 TTCGCAGTTC
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
16 2 0.04
17 29 0.62
18 14 0.30
19 2 0.04
ACGTcount: A:0.16, C:0.16, G:0.30, T:0.38
Consensus pattern (17 bp):
GTGAGCTCACAAGTTTG
Found at i:29093890 original size:18 final size:17
Alignment explanation
Indices: 29093867--29093909 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 17
29093857 GCTTGCTGTC
*
29093867 TTGGTGAGCTCACATTTT
1 TTGGTGAGCTCACA-ATT
29093885 TTGGTGAGCTCACAATT
1 TTGGTGAGCTCACAATT
29093902 TTGGTGAG
1 TTGGTGAG
29093910 TTCGCAGTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.19, C:0.14, G:0.28, T:0.40
Consensus pattern (17 bp):
TTGGTGAGCTCACAATT
Found at i:29098771 original size:47 final size:47
Alignment explanation
Indices: 29098706--29098799 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 47
29098696 ATATATGCAC
*
29098706 CAACTTGAGATAGAGTGTTGAAATATGTAAAACCCATATATTCTGGG
1 CAACTTGAGAGAGAGTGTTGAAATATGTAAAACCCATATATTCTGGG
* * * *
29098753 CAACTTGAGGGAGGGTGTTGAAATATGTGAAACCCATATATTTTGGG
1 CAACTTGAGAGAGAGTGTTGAAATATGTAAAACCCATATATTCTGGG
29098800 GATATATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.30
Consensus pattern (47 bp):
CAACTTGAGAGAGAGTGTTGAAATATGTAAAACCCATATATTCTGGG
Found at i:29100824 original size:21 final size:21
Alignment explanation
Indices: 29100798--29100839 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
29100788 GTGGAAAAGG
29100798 TTAGAAACTATTTATGTGACT
1 TTAGAAACTATTTATGTGACT
*
29100819 TTAGAAACTCTTTATGTGACT
1 TTAGAAACTATTTATGTGACT
29100840 AAGTCTTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43
Consensus pattern (21 bp):
TTAGAAACTATTTATGTGACT
Found at i:29102376 original size:38 final size:38
Alignment explanation
Indices: 29102322--29102398 Score: 138
Period size: 38 Copynumber: 2.0 Consensus size: 38
29102312 ATATCTATCT
29102322 TTTGTACTTTTCGTTCTTTTGCTATTATAGTAAAATTA
1 TTTGTACTTTTCGTTCTTTTGCTATTATAGTAAAATTA
29102360 TTTGTACTCTTT-GTTCTTTTGCTATTATAGTAAAATTA
1 TTTGTACT-TTTCGTTCTTTTGCTATTATAGTAAAATTA
29102398 T
1 T
29102399 CTTTACCCGT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 35 0.92
39 3 0.08
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.56
Consensus pattern (38 bp):
TTTGTACTTTTCGTTCTTTTGCTATTATAGTAAAATTA
Found at i:29107217 original size:15 final size:15
Alignment explanation
Indices: 29107197--29107227 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
29107187 GTTATGTAAG
29107197 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
29107212 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
29107227 T
1 T
29107228 ATGTTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:29108133 original size:76 final size:76
Alignment explanation
Indices: 29108007--29108185 Score: 331
Period size: 76 Copynumber: 2.4 Consensus size: 76
29107997 TCCTGCAGTT
29108007 GCTGTCAGTCTCGCTACCTCTTTAGTTGCCACCCCTAAAGCTAAACAAAAGCTAAGCTTGTAAGC
1 GCTGTCAGTCTCGCTACCTCTTTAGTTGCCACCCCTAAAGCTAAACAAAAGCTAAGCTTGTAAGC
29108072 TCATAGAGAAA
66 TCATAGAGAAA
* * *
29108083 GCTGTCAGTCTCGCTACCTCTTTAGTTGCCACCCCTAGAGCTAAGCAAAAGCTGAGCTTGTAAGC
1 GCTGTCAGTCTCGCTACCTCTTTAGTTGCCACCCCTAAAGCTAAACAAAAGCTAAGCTTGTAAGC
29108148 TCATAGAGAAA
66 TCATAGAGAAA
29108159 GCTGTCAGTCTCGCTACCTCTTTAGTT
1 GCTGTCAGTCTCGCTACCTCTTTAGTT
29108186 ACCCACAACC
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 100 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (76 bp):
GCTGTCAGTCTCGCTACCTCTTTAGTTGCCACCCCTAAAGCTAAACAAAAGCTAAGCTTGTAAGC
TCATAGAGAAA
Found at i:29110006 original size:16 final size:16
Alignment explanation
Indices: 29109976--29110005 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
29109966 TAAATGTAAC
29109976 ATATAATATGAAAAAT
1 ATATAATATGAAAAAT
29109992 ATATAATA-GAAAAA
1 ATATAATATGAAAAA
29110006 ACTAAACAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (16 bp):
ATATAATATGAAAAAT
Found at i:29113033 original size:27 final size:27
Alignment explanation
Indices: 29113003--29113081 Score: 72
Period size: 27 Copynumber: 2.9 Consensus size: 27
29112993 TTTTTATTTA
29113003 TTTATATATTTTATAAATTTATAAATT
1 TTTATATATTTTATAAATTTATAAATT
* * * * *
29113030 TTTAGT-TCTTTTATATAGTCATATATT
1 TTTA-TATATTTTATAAATTTATAAATT
29113057 TTTATATATTTT-TCATAATTTATAA
1 TTTATATATTTTAT-A-AATTTATAA
29113082 CTTTATATTT
Statistics
Matches: 38, Mismatches: 10, Indels: 7
0.69 0.18 0.13
Matches are distributed among these distances:
26 2 0.05
27 30 0.79
28 6 0.16
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (27 bp):
TTTATATATTTTATAAATTTATAAATT
Found at i:29119372 original size:97 final size:97
Alignment explanation
Indices: 29119150--29119533 Score: 609
Period size: 97 Copynumber: 4.0 Consensus size: 97
29119140 GTTTTTAGAT
* * * * *
29119150 TTTAGGGTTTTAAAGAAAAAATT-AAATAAATAAGGGTTTAAGGTTTCTTAAGTAAATTAATTAT
1 TTTAGGGTTTTCAAGAAAAAATTCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT
29119214 AAATTTT-AAAAAATTAGATTAGGGTTTAGTG
66 AAATTTTAAAAAAATTAGATTAGGGTTTAGTG
*
29119245 TTTAGGGTTCTT-AAGGAGAAAA-TCAAATAAATTAGGGTTT-GGTGTTACTTGAGTAAATTAAT
1 TTTAGGGTT-TTCAA-GAAAAAATTCAAATAAATTAGGGTTTAGG-GTTACTTGAGTAAATTAAT
*
29119307 TATAAATTTAAAAAAAATTAGATTAGGGTTTAGTG
63 TATAAATTTTAAAAAAATTAGATTAGGGTTTAGTG
29119342 TTTAGGGTTTTCAAGAAAAAATTCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT
1 TTTAGGGTTTTCAAGAAAAAATTCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT
*
29119407 AAATTTTTAAAAAATTAGATTAGGGTTTAGTG
66 AAATTTTAAAAAAATTAGATTAGGGTTTAGTG
29119439 TTTAGGGTTTTCAAGAAAAAATTCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT
1 TTTAGGGTTTTCAAGAAAAAATTCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT
*
29119504 AAATTTTTAAAAAAA-TAGAATAGGGTTTAG
66 AAA-TTTTAAAAAAATTAGATTAGGGTTTAG
29119534 GATTTTTAAG
Statistics
Matches: 269, Mismatches: 11, Indels: 16
0.91 0.04 0.05
Matches are distributed among these distances:
95 13 0.05
96 57 0.21
97 187 0.70
98 12 0.04
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (97 bp):
TTTAGGGTTTTCAAGAAAAAATTCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT
AAATTTTAAAAAAATTAGATTAGGGTTTAGTG
Found at i:29119832 original size:125 final size:126
Alignment explanation
Indices: 29119609--29120024 Score: 681
Period size: 126 Copynumber: 3.3 Consensus size: 126
29119599 TAATTTAAAA
** *
29119609 AAGCTCCCACGTGGACGCTCTTTTGCTATTGTAGTTCTTGAAAAAATAATTTTGAGAAGACGTTT
1 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGTTT
29119674 CTGAGCAAATAGTGTCAAAAACCCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
66 CTGAGCAAATAGTGTCAAAAACCCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
* *
29119735 AAGCTCCCACGTGGACACTCTTTTGCTATAGTAGTTCCTG-AAAAATAATTTTGAGAAGACGTTT
1 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGTTT
* *
29119799 CTGAGCAAATAGTGTCAAAAACTCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAA
66 CTGAGCAAATAGTGTCAAAAACCCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
** *
29119860 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTTTTGAAAAAATAATTTTGAGAAGATGTTT
1 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGTTT
* * * * * *
29119925 CTGAGCAAATAGTGTTAAAAACGCTTCAAGCAGGATGCAATATCAGCAAAAGTACTAAAAG
66 CTGAGCAAATAGTGTCAAAAACCCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
29119986 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCCT
1 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCCT
29120025 ATTTGGCCTG
Statistics
Matches: 270, Mismatches: 19, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
125 119 0.44
126 151 0.56
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (126 bp):
AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGTTT
CTGAGCAAATAGTGTCAAAAACCCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
Found at i:29123614 original size:18 final size:18
Alignment explanation
Indices: 29123588--29123629 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
29123578 GATTAGAAAA
* * *
29123588 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
29123606 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
29123624 AGGATA
1 AGGATA
29123630 TGCACATGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.45, C:0.07, G:0.29, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:29123757 original size:30 final size:30
Alignment explanation
Indices: 29123686--29123779 Score: 107
Period size: 30 Copynumber: 3.1 Consensus size: 30
29123676 TGAAATGTTT
* * * *
29123686 GGCCGGGTGACTGTGTGGGTGCTATTGCTG
1 GGCCGGGTGATTGTGTGGGCGCTGTTGATG
* * *
29123716 GGCCTGGTGATTGTATGGGCGCTGTTGATA
1 GGCCGGGTGATTGTGTGGGCGCTGTTGATG
* *
29123746 GGCCGGGTGATTGTGTGAGCACTGTTGATG
1 GGCCGGGTGATTGTGTGGGCGCTGTTGATG
29123776 GGCC
1 GGCC
29123780 TGCATCGTCA
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.11, C:0.16, G:0.44, T:0.30
Consensus pattern (30 bp):
GGCCGGGTGATTGTGTGGGCGCTGTTGATG
Found at i:29124485 original size:19 final size:20
Alignment explanation
Indices: 29124450--29124490 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
29124440 AATTTTAGCA
*
29124450 TACGATTATATT-TTAAATC
1 TACGATTATATTGTAAAATC
29124469 TACG-TTATAATTGTAAAATC
1 TACGATTAT-ATTGTAAAATC
29124489 TA
1 TA
29124491 ATAGAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 4 0.21
19 7 0.37
20 8 0.42
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (20 bp):
TACGATTATATTGTAAAATC
Found at i:29125434 original size:22 final size:22
Alignment explanation
Indices: 29125403--29125452 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
29125393 TTTTCGAAAA
* **
29125403 AAATTAAAGAGAGCTTTGAGAG
1 AAATTTAAGAGAAATTTGAGAG
*
29125425 GAATTTAAGAGAAATTTGAGAG
1 AAATTTAAGAGAAATTTGAGAG
29125447 AAATTT
1 AAATTT
29125453 GAAAGATTGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.46, C:0.02, G:0.24, T:0.28
Consensus pattern (22 bp):
AAATTTAAGAGAAATTTGAGAG
Found at i:29125453 original size:11 final size:11
Alignment explanation
Indices: 29125417--29125454 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
29125407 TAAAGAGAGC
*
29125417 TTTGAGAGGAA
1 TTTGAGAGAAA
*
29125428 TTTAAGAGAAA
1 TTTGAGAGAAA
29125439 TTTGAGAGAAA
1 TTTGAGAGAAA
29125450 TTTGA
1 TTTGA
29125455 AAGATTGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.26, T:0.32
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:29126006 original size:13 final size:11
Alignment explanation
Indices: 29125978--29126009 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
29125968 TTATTCAATA
29125978 TTCTCTCAAAT
1 TTCTCTCAAAT
29125989 TTCTCTCAAAT
1 TTCTCTCAAAT
*
29126000 TCCTCTCAAA
1 TTCTCTCAAA
29126010 GCTCTCTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.28, C:0.31, G:0.00, T:0.41
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:29126015 original size:22 final size:22
Alignment explanation
Indices: 29125972--29126016 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
29125962 ATTCAATTAT
**
29125972 TCAATATTCTCTCAAATTTCTC
1 TCAATATTCTCTCAAAGCTCTC
29125994 TCAA-ATTCCTCTCAAAGCTCTC
1 TCAATATT-CTCTCAAAGCTCTC
29126016 T
1 T
29126017 TTAATTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.27, C:0.31, G:0.02, T:0.40
Consensus pattern (22 bp):
TCAATATTCTCTCAAAGCTCTC
Found at i:29127042 original size:95 final size:96
Alignment explanation
Indices: 29126892--29127083 Score: 323
Period size: 95 Copynumber: 2.0 Consensus size: 96
29126882 TTAGAGGTTG
* *
29126892 CCTAATTTATTTGATTTTATCCTTAAGAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAAT
1 CCTAATTTATTTGATTTTATCCTTAAAAACCATAAACACTAAACCCTAATCTAATTTTTTAAAAT
* * *
29126957 TTATAATTAATTTACTCAAGTAACCCTAAAC
66 TTAAAATTAATTTAATCAAGAAACCCTAAAC
29126988 CCTAATTTATTTGATTTT-TCCTTAAAAACCATAAACACTAAACCCTAATCTAATTTTTTAAAAT
1 CCTAATTTATTTGATTTTATCCTTAAAAACCATAAACACTAAACCCTAATCTAATTTTTTAAAAT
*
29127052 TTAAAATTAATTTAATTAAGAAACCCTAAAC
66 TTAAAATTAATTTAATCAAGAAACCCTAAAC
29127083 C
1 C
29127084 TTAAACCCTT
Statistics
Matches: 90, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
95 72 0.80
96 18 0.20
ACGTcount: A:0.41, C:0.19, G:0.03, T:0.38
Consensus pattern (96 bp):
CCTAATTTATTTGATTTTATCCTTAAAAACCATAAACACTAAACCCTAATCTAATTTTTTAAAAT
TTAAAATTAATTTAATCAAGAAACCCTAAAC
Found at i:29129301 original size:19 final size:19
Alignment explanation
Indices: 29129277--29129387 Score: 159
Period size: 19 Copynumber: 5.8 Consensus size: 19
29129267 AATCTTCAGG
29129277 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
29129296 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* ***
29129315 AATACATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
29129334 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
29129353 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
29129372 GATATGCAACCTTAGA
1 GATATGCAATCTTAGA
29129388 AGATATGATT
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 79 1.00
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:29129327 original size:38 final size:38
Alignment explanation
Indices: 29129284--29129387 Score: 181
Period size: 38 Copynumber: 2.7 Consensus size: 38
29129274 AGGGATATGC
29129284 AATCTTAGATATGATATGCAATCTTAGATATAATACAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATACAT
* *
29129322 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATACAT
*
29129360 AATCTTAGATATGATATGCAACCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
29129388 AGATATGATT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 63 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATACAT
Found at i:29133089 original size:10 final size:10
Alignment explanation
Indices: 29133074--29133107 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
29133064 ATTCAATCAG
*
29133074 AAAAAAAA-C
1 AAAAAAAAGA
29133083 AAAAAAAAGA
1 AAAAAAAAGA
29133093 AAAAAAAAGA
1 AAAAAAAAGA
29133103 AAAAA
1 AAAAA
29133108 GAAAAAAGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.91, C:0.03, G:0.06, T:0.00
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:29133095 original size:18 final size:17
Alignment explanation
Indices: 29133072--29133114 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
29133062 ATATTCAATC
29133072 AGAAAAAAAACAAAAAAA
1 AGAAAAAAAA-AAAAAAA
*
29133090 AGAAAAAAAAAGAAAAA
1 AGAAAAAAAAAAAAAAA
29133107 AGAAAAAA
1 AGAAAAAA
29133115 GCAAAAGGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.88, C:0.02, G:0.09, T:0.00
Consensus pattern (17 bp):
AGAAAAAAAAAAAAAAA
Found at i:29133097 original size:17 final size:17
Alignment explanation
Indices: 29133075--29133120 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
29133065 TTCAATCAGA
29133075 AAAAAAACAAAAAAAAG
1 AAAAAAACAAAAAAAAG
29133092 AAAAAAA-AAGAAAAAAG
1 AAAAAAACAA-AAAAAAG
*
29133109 AAAAAAGCAAAA
1 AAAAAAACAAAA
29133121 GGAGAGGCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 2 0.08
17 22 0.85
18 2 0.08
ACGTcount: A:0.87, C:0.04, G:0.09, T:0.00
Consensus pattern (17 bp):
AAAAAAACAAAAAAAAG
Found at i:29135077 original size:10 final size:10
Alignment explanation
Indices: 29135062--29135087 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
29135052 GATTCAATCA
29135062 AAAAAAAAAG
1 AAAAAAAAAG
29135072 AAAAAAAAAG
1 AAAAAAAAAG
29135082 AAAAAA
1 AAAAAA
29135088 GAAAAGGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:29135087 original size:17 final size:16
Alignment explanation
Indices: 29135061--29135092 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
29135051 AGATTCAATC
29135061 AAAAAAAAAAGAAAAA
1 AAAAAAAAAAGAAAAA
29135077 AAAAGAAAAAAGAAAA
1 AAAA-AAAAAAGAAAA
29135093 GGAGAGGCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAGAAAAA
Found at i:29136923 original size:19 final size:19
Alignment explanation
Indices: 29136899--29137009 Score: 177
Period size: 19 Copynumber: 5.8 Consensus size: 19
29136889 AATCTTCAGG
29136899 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
29136918 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
29136937 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
29136956 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
29136975 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
29136994 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
29137010 AGATATGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 82 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:29136949 original size:38 final size:38
Alignment explanation
Indices: 29136906--29137009 Score: 199
Period size: 38 Copynumber: 2.7 Consensus size: 38
29136896 AGGGATATGC
29136906 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
29136944 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
29136982 AATCTTAGATATGATATGCAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
29137010 AGATATGATT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.38
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:29151807 original size:15 final size:16
Alignment explanation
Indices: 29151787--29151816 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
29151777 TAGCAACTAA
29151787 TATATAAT-TATATTT
1 TATATAATATATATTT
29151802 TATATAATATATATT
1 TATATAATATATATT
29151817 AATTGTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATATAATATATATTT
Found at i:29152478 original size:47 final size:47
Alignment explanation
Indices: 29152426--29152522 Score: 194
Period size: 47 Copynumber: 2.1 Consensus size: 47
29152416 GCCCTCCAAC
29152426 TTTAGCCAACGTCACCTTGCTTCCCTTTCATATTATTATTTTTTTCT
1 TTTAGCCAACGTCACCTTGCTTCCCTTTCATATTATTATTTTTTTCT
29152473 TTTAGCCAACGTCACCTTGCTTCCCTTTCATATTATTATTTTTTTCT
1 TTTAGCCAACGTCACCTTGCTTCCCTTTCATATTATTATTTTTTTCT
29152520 TTT
1 TTT
29152523 TGAAGTTCTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.16, C:0.25, G:0.06, T:0.53
Consensus pattern (47 bp):
TTTAGCCAACGTCACCTTGCTTCCCTTTCATATTATTATTTTTTTCT
Found at i:29159957 original size:16 final size:16
Alignment explanation
Indices: 29159938--29159968 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
29159928 CTTAGGTTCA
*
29159938 CAAACAGATAGGCTCG
1 CAAACAAATAGGCTCG
29159954 CAAACAAATAGGCTC
1 CAAACAAATAGGCTC
29159969 TCATACATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.26, G:0.19, T:0.13
Consensus pattern (16 bp):
CAAACAAATAGGCTCG
Found at i:29161732 original size:200 final size:200
Alignment explanation
Indices: 29161389--29161788 Score: 791
Period size: 200 Copynumber: 2.0 Consensus size: 200
29161379 CTGTAATGGC
29161389 ATTACAGCCTGAATCCATTCCAGCTCTATTACAGGAAAAGGTTGAATAGCCATTCTCTTCCTTCA
1 ATTACAGCCTGAATCCATTCCAGCTCTATTACAGGAAAAGGTTGAATAGCCATTCTCTTCCTTCA
*
29161454 CTAGTGAATAGCCATTCCATTCCACGGGAGTAATTTTTTTCCCTATTTTAAATTTTTCCCCTCAC
66 CTAGTGAATAGCCATTCCATTCCACGGGAGTAATTTTTTTCCCTATTTTAAAATTTTCCCCTCAC
29161519 CTTTACCCAGAGAGAATGAAGAAGCTGTAATGGAACCATCATCTTCTCCTTCAGTCTGGTAACTT
131 CTTTACCCAGAGAGAATGAAGAAGCTGTAATGGAACCATCATCTTCTCCTTCAGTCTGGTAACTT
29161584 TCTTT
196 TCTTT
29161589 ATTACAGCCTGAATCCATTCCAGCTCTATTACAGGAAAAGGTTGAATAGCCATTCTCTTCCTTCA
1 ATTACAGCCTGAATCCATTCCAGCTCTATTACAGGAAAAGGTTGAATAGCCATTCTCTTCCTTCA
29161654 CTAGTGAATAGCCATTCCATTCCACGGGAGTAATTTTTTTCCCTATTTTAAAATTTTCCCCTCAC
66 CTAGTGAATAGCCATTCCATTCCACGGGAGTAATTTTTTTCCCTATTTTAAAATTTTCCCCTCAC
29161719 CTTTACCCAGAGAGAATGAAGAAGCTGTAATGGAACCATCATCTTCTCCTTCAGTCTGGTAACTT
131 CTTTACCCAGAGAGAATGAAGAAGCTGTAATGGAACCATCATCTTCTCCTTCAGTCTGGTAACTT
29161784 TCTTT
196 TCTTT
29161789 CCTTTCCATC
Statistics
Matches: 199, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
200 199 1.00
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (200 bp):
ATTACAGCCTGAATCCATTCCAGCTCTATTACAGGAAAAGGTTGAATAGCCATTCTCTTCCTTCA
CTAGTGAATAGCCATTCCATTCCACGGGAGTAATTTTTTTCCCTATTTTAAAATTTTCCCCTCAC
CTTTACCCAGAGAGAATGAAGAAGCTGTAATGGAACCATCATCTTCTCCTTCAGTCTGGTAACTT
TCTTT
Found at i:29163860 original size:23 final size:22
Alignment explanation
Indices: 29163834--29164021 Score: 110
Period size: 23 Copynumber: 8.2 Consensus size: 22
29163824 AGTGTTGCAT
*
29163834 ATTGAAGTATTTAAATGCTGTGA
1 ATTGAAGT-TTTAAATGCTGTAA
* *
29163857 ATTGAAGTGTTAAAGTGCTGCAA
1 ATTGAAGTTTTAAA-TGCTGTAA
*
29163880 ATTGAAGTGTTTAAATGTTGTAA
1 ATTGAAGT-TTTAAATGCTGTAA
* * *
29163903 ATTGAAGTGTTTTAAGTACTGCAA
1 ATTGAA--GTTTTAAATGCTGTAA
* ** *
29163927 ATTGAATTGTTTAGTTGCTGAAA
1 ATTGAAGT-TTTAAATGCTGTAA
*
29163950 ATTGAGATGTTTT-ATTGCTGT-A
1 ATTGA-A-GTTTTAAATGCTGTAA
* * *
29163972 ATTGAGGTGTATAAATGTTGTAA
1 ATTGAAGT-TTTAAATGCTGTAA
* * *
29163995 ATTGAAGTGTTTTATTGCTGAAA
1 ATTGAAGT-TTTAAATGCTGTAA
29164018 ATTG
1 ATTG
29164022 GATGGTATAA
Statistics
Matches: 127, Mismatches: 28, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
20 2 0.02
21 2 0.02
22 18 0.14
23 77 0.61
24 25 0.20
25 3 0.02
ACGTcount: A:0.32, C:0.04, G:0.23, T:0.41
Consensus pattern (22 bp):
ATTGAAGTTTTAAATGCTGTAA
Found at i:29163884 original size:46 final size:46
Alignment explanation
Indices: 29163812--29164005 Score: 176
Period size: 46 Copynumber: 4.2 Consensus size: 46
29163802 TTTATCATGT
* * *
29163812 TTGAAGTGTTAAAGTGTTGCATATTGAAGTATTTAAATGCTGTGAA
1 TTGAAGTGTTAAAGTGCTGCAAATTGAAGTATTTAAATGCTGTAAA
* *
29163858 TTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAA
1 TTGAAGTGTTAAAGTGCTGCAAATTGAAGTATTTAAATGCTGTAAA
* * * * ** *
29163904 TTGAAGTGTTTTAAGTACTGCAAATTGAATTGTTTAGTTGCTGAAAA
1 TTGAAGTG-TTAAAGTGCTGCAAATTGAAGTATTTAAATGCTGTAAA
** * * * * * *
29163951 TTG-AGATGTTTTATTGCTG-TAATTGAGGTGTATAAATGTTGTAAA
1 TTGAAG-TGTTAAAGTGCTGCAAATTGAAGTATTTAAATGCTGTAAA
29163996 TTGAAGTGTT
1 TTGAAGTGTT
29164006 TTATTGCTGA
Statistics
Matches: 122, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
45 25 0.20
46 61 0.50
47 36 0.30
ACGTcount: A:0.31, C:0.04, G:0.24, T:0.41
Consensus pattern (46 bp):
TTGAAGTGTTAAAGTGCTGCAAATTGAAGTATTTAAATGCTGTAAA
Found at i:29164634 original size:45 final size:44
Alignment explanation
Indices: 29164550--29164645 Score: 140
Period size: 45 Copynumber: 2.2 Consensus size: 44
29164540 ATTACAACAT
* *
29164550 CATTCCATTCAACCAAACACAAGAATACTATTATAGTTCTATTC
1 CATTACATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
*
29164594 CATTACATTCAACCAAACA-ATTGAATTACTATTACAGTTCTATTC
1 CATTACATTCAACCAAACACA-AGAA-TACTATTACAGTTCTATTC
29164639 CATTACA
1 CATTACA
29164646 GCTCTATTCC
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 21 0.45
45 25 0.53
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.33
Consensus pattern (44 bp):
CATTACATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
Found at i:29164645 original size:16 final size:16
Alignment explanation
Indices: 29164624--29164695 Score: 108
Period size: 16 Copynumber: 4.5 Consensus size: 16
29164614 TTGAATTACT
*
29164624 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
29164640 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* * *
29164656 ATTATAGCTTTATTCA
1 ATTACAGCTCTATTCC
29164672 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
29164688 ATTACAGC
1 ATTACAGC
29164696 GAACCAAACG
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:29166994 original size:48 final size:48
Alignment explanation
Indices: 29166911--29167011 Score: 148
Period size: 48 Copynumber: 2.1 Consensus size: 48
29166901 GAAGATGCTT
*
29166911 TTTCATCAAATAATAATAATGAAAGTTTCAAAGGTGATTGAAAACGCG
1 TTTCATCAAATAATAATAATGAAAGCTTCAAAGGTGATTGAAAACGCG
* * * * *
29166959 TTTCATCGAATAATAATAATGAATGCTTCAGAGGTGCTTGAAAACGTG
1 TTTCATCAAATAATAATAATGAAAGCTTCAAAGGTGATTGAAAACGCG
29167007 TTTCA
1 TTTCA
29167012 GTAGATATGT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.32
Consensus pattern (48 bp):
TTTCATCAAATAATAATAATGAAAGCTTCAAAGGTGATTGAAAACGCG
Found at i:29173590 original size:14 final size:14
Alignment explanation
Indices: 29173571--29173600 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
29173561 ATTCAACAGA
29173571 ACTAAAATGATTAT
1 ACTAAAATGATTAT
*
29173585 ACTAAAGTGATTAT
1 ACTAAAATGATTAT
29173599 AC
1 AC
29173601 ATGCTAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (14 bp):
ACTAAAATGATTAT
Found at i:29175267 original size:38 final size:38
Alignment explanation
Indices: 29175225--29175299 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
29175215 CAATACACAA
29175225 CATGTAATTCACTTACCAAAACTTACCAATTGTACATG
1 CATGTAATTCACTTACCAAAACTTACCAATTGTACATG
*
29175263 CATGTAATTCACTTGCCAAAACTTACCAATTGTACAT
1 CATGTAATTCACTTACCAAAACTTACCAATTGTACAT
29175300 CTAATCAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (38 bp):
CATGTAATTCACTTACCAAAACTTACCAATTGTACATG
Found at i:29176219 original size:25 final size:25
Alignment explanation
Indices: 29176085--29176212 Score: 136
Period size: 25 Copynumber: 5.2 Consensus size: 25
29176075 GTACATGTAT
* ** *
29176085 GCTCATACAAGCTCTGAATCGGTAT
1 GCTCATACGAGCTGAGAATCGGTAA
* *
29176110 GCTCTTACGAGCT-ATAATCGGTAA
1 GCTCATACGAGCTGAGAATCGGTAA
29176134 GCTCATACGAGCTGAGTAAT-GGTAA
1 GCTCATACGAGCTGAG-AATCGGTAA
* * *
29176159 GCTCATGCGAGTTGA-ATAACGGTAA
1 GCTCATACGAGCTGAGA-ATCGGTAA
29176184 GCTCATACGAGCTGAGAATCGGTAA
1 GCTCATACGAGCTGAGAATCGGTAA
29176209 GCTC
1 GCTC
29176213 TCACGAGTTG
Statistics
Matches: 85, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
23 1 0.01
24 21 0.25
25 59 0.69
26 4 0.05
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (25 bp):
GCTCATACGAGCTGAGAATCGGTAA
Found at i:29176220 original size:50 final size:50
Alignment explanation
Indices: 29176085--29176224 Score: 162
Period size: 50 Copynumber: 2.8 Consensus size: 50
29176075 GTACATGTAT
* ** * *
29176085 GCTCATACAAGCTCTGAATCGGTATGCTCTTACGAGCT--ATAATCGGTAA
1 GCTCATACGAGCTGAGAATCGGTAAGCTC-TACGAGTTGAATAATCGGTAA
*
29176134 GCTCATACGAGCTGAGTAAT-GGTAAGCTCATGCGAGTTGAATAA-CGGTAA
1 GCTCATACGAGCTGAG-AATCGGTAAGCTC-TACGAGTTGAATAATCGGTAA
29176184 GCTCATACGAGCTGAGAATCGGTAAGCTCTCACGAGTTGAA
1 GCTCATACGAGCTGAGAATCGGTAAGCTCT-ACGAGTTGAA
29176225 ATTGGTAACC
Statistics
Matches: 78, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
49 31 0.40
50 43 0.55
51 4 0.05
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (50 bp):
GCTCATACGAGCTGAGAATCGGTAAGCTCTACGAGTTGAATAATCGGTAA
Found at i:29188399 original size:24 final size:25
Alignment explanation
Indices: 29188346--29188399 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
29188336 AACAAATTCT
* *
29188346 TTTTTTCATTTTCATCACTCGTTTC
1 TTTTTTCATTTTAATCACTCGTCTC
29188371 -TTTTTC-TTTTGAATCACTC-TCTC
1 TTTTTTCATTTT-AATCACTCGTCTC
29188394 TTTTTT
1 TTTTTT
29188400 TATCACTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.11, C:0.22, G:0.04, T:0.63
Consensus pattern (25 bp):
TTTTTTCATTTTAATCACTCGTCTC
Found at i:29200768 original size:25 final size:25
Alignment explanation
Indices: 29200726--29200820 Score: 113
Period size: 25 Copynumber: 3.8 Consensus size: 25
29200716 TATGCTCACA
*
29200726 TGAGCTGTA-AACGGTAAGCTCCTC
1 TGAGCTGAATAACGGTAAGCTCCTC
*
29200750 TAAGCTGAATAACGGTAAGCTCCT-
1 TGAGCTGAATAACGGTAAGCTCCTC
*
29200774 TCGAGCTAAATAACGGTAAGCTCCTC
1 T-GAGCTGAATAACGGTAAGCTCCTC
* * *
29200800 CGAGTTGAATAATGGTAAGCT
1 TGAGCTGAATAACGGTAAGCT
29200821 TACACAAGCT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
24 8 0.13
25 52 0.87
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (25 bp):
TGAGCTGAATAACGGTAAGCTCCTC
Found at i:29211239 original size:15 final size:16
Alignment explanation
Indices: 29211215--29211260 Score: 60
Period size: 15 Copynumber: 3.0 Consensus size: 16
29211205 ATATCGATAC
29211215 CCATATCTTTGACTTT
1 CCATATCTTTGACTTT
**
29211231 CCA-ATCTTTGA-TAC
1 CCATATCTTTGACTTT
29211245 CCATATCTTTGACTTT
1 CCATATCTTTGACTTT
29211261 ATTTGATACC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
14 4 0.17
15 16 0.67
16 4 0.17
ACGTcount: A:0.22, C:0.26, G:0.07, T:0.46
Consensus pattern (16 bp):
CCATATCTTTGACTTT
Found at i:29211244 original size:30 final size:28
Alignment explanation
Indices: 29211210--29211288 Score: 119
Period size: 25 Copynumber: 2.9 Consensus size: 28
29211200 CTAATATATC
29211210 GATACCCATATCTTTGACTTTCCAATCTTT
1 GATACCCATATCTTTGACTTTCCAA--TTT
29211240 GATACCCATATCTTTGACTTT---ATTT
1 GATACCCATATCTTTGACTTTCCAATTT
29211265 GATACCCATATCTTTGACTTTCCA
1 GATACCCATATCTTTGACTTTCCA
29211289 TAAATATGGA
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
25 24 0.52
27 1 0.02
30 21 0.46
ACGTcount: A:0.24, C:0.25, G:0.08, T:0.43
Consensus pattern (28 bp):
GATACCCATATCTTTGACTTTCCAATTT
Found at i:29215906 original size:30 final size:31
Alignment explanation
Indices: 29215857--29215916 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
29215847 TTTCTTATGT
29215857 CAATATCTCGATACCCATATCTTTGACTTTC
1 CAATATCTCGATACCCATATCTTTGACTTTC
* *
29215888 CAATAT-TTGATACTCATATCTTTGACTTT
1 CAATATCTCGATACCCATATCTTTGACTTT
29215917 ATTTGATACC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.27, C:0.23, G:0.07, T:0.43
Consensus pattern (31 bp):
CAATATCTCGATACCCATATCTTTGACTTTC
Found at i:29215919 original size:25 final size:25
Alignment explanation
Indices: 29215891--29215941 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
29215881 GACTTTCCAA
29215891 TATTTGATA-CTCATATCTTTGACTT
1 TATTTGATACCT-ATATCTTTGACTT
29215916 TATTTGATACCTATATCTTTGACTT
1 TATTTGATACCTATATCTTTGACTT
29215941 T
1 T
29215942 TCATAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 23 0.92
26 2 0.08
ACGTcount: A:0.24, C:0.16, G:0.08, T:0.53
Consensus pattern (25 bp):
TATTTGATACCTATATCTTTGACTT
Found at i:29216601 original size:139 final size:139
Alignment explanation
Indices: 29216441--29216745 Score: 494
Period size: 137 Copynumber: 2.2 Consensus size: 139
29216431 TTATTAATAT
* *
29216441 ATAC-AAAATATTAATTGTATATATTTTA-TTGAATTTATTAACATAAACAGTTATATTATTTAA
1 ATACGAAAATATTAATTGTATATATTTTACCT-AATTTATTAACATAAACAGTTATATTAATTAA
* *
29216504 TTTCGGTCA-AA-ATATAAGACATGAAAATTAATATTTTTTTAGAAAGAATATAATTAATATATG
65 TTTCGGTCAGAATATAAAAGACATGAAAATTAATATTCTTTTAGAAAGAATATAATTAATATATG
29216567 AATTTGATTC
130 AATTTGATTC
*
29216577 ATACGAAAATATTAATTGTATATATTTTACCTAATTTATTAATATAAACAGTTATATTAATTAAT
1 ATACGAAAATATTAATTGTATATATTTTACCTAATTTATTAACATAAACAGTTATATTAATTAAT
* *
29216642 TTCGGTCAGAATATAAAAGACATGAAAATTAATATTCTTTTGGAAATAATATAATTAATATATGA
66 TTCGGTCAGAATATAAAAGACATGAAAATTAATATTCTTTTAGAAAGAATATAATTAATATATGA
29216707 ATTTGATTC
131 ATTTGATTC
*
29216716 ATACG-AAATATTATTTGTATATATTTTACC
1 ATACGAAAATATTAATTGTATATATTTTACC
29216746 AGGAAATTAA
Statistics
Matches: 157, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
136 4 0.03
137 63 0.40
138 27 0.17
139 63 0.40
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.42
Consensus pattern (139 bp):
ATACGAAAATATTAATTGTATATATTTTACCTAATTTATTAACATAAACAGTTATATTAATTAAT
TTCGGTCAGAATATAAAAGACATGAAAATTAATATTCTTTTAGAAAGAATATAATTAATATATGA
ATTTGATTC
Found at i:29216821 original size:82 final size:82
Alignment explanation
Indices: 29216667--29216827 Score: 279
Period size: 82 Copynumber: 2.0 Consensus size: 82
29216657 AAAGACATGA
* *
29216667 AAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTTGATTCATACGAAATATTATTT
1 AAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACGAAATATTAATT
29216732 GTATATATTTTACCAGG
66 GTATATATTTTACCAGG
*
29216749 AAATTAATATTCTTTTGGAAAGAATATAATTAATATTTGAATTTGATTCATAC-AAATTATTAAT
1 AAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACGAAA-TATTAAT
29216813 TGTATATATTTTACC
65 TGTATATATTTTACC
29216828 GAATTTAGTA
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
81 3 0.04
82 72 0.96
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45
Consensus pattern (82 bp):
AAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACGAAATATTAATT
GTATATATTTTACCAGG
Found at i:29216911 original size:220 final size:220
Alignment explanation
Indices: 29216528--29217137 Score: 1031
Period size: 220 Copynumber: 2.8 Consensus size: 220
29216518 TAAGACATGA
* * * *
29216528 AAATTAATATTTTTTTAGAAAGAATATAATTAATATATGAATTTGATTCATACGAAAATATTAAT
1 AAATTAATATTCTTTTGGAAAGAATATAATTAATATTTGAATTTGATTCATAC-AAATTATTAAT
* * *
29216593 TGTATATATTTTACCTAATTTATTAATATAAACAGTTATATTAATTAATTTCGGTCAGAATATAA
65 TGTATATATTTTACCGAATTTACTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAA
* *
29216658 AAGACATGAAAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTTGATTCATACGAA
130 AAGACATGAAAATTAATATTCTTTTGGAAATAATATAATTAAGATATGAATTTGATTCATACAAA
29216723 ATATTATTTGTATATATTTTACCAGG
195 ATATTATTTGTATATATTTTACCAGG
29216749 AAATTAATATTCTTTTGGAAAGAATATAATTAATATTTGAATTTGATTCATACAAATTATTAATT
1 AAATTAATATTCTTTTGGAAAGAATATAATTAATATTTGAATTTGATTCATACAAATTATTAATT
*
29216814 GTATATATTTTACCGAATTTAGTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAA
66 GTATATATTTTACCGAATTTACTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAA
*
29216879 AGACATTAAAATTAATATTCTTTTGGAAATAATATAATTAAGATATGAATTTGATTCATACAAAA
131 AGACATGAAAATTAATATTCTTTTGGAAATAATATAATTAAGATATGAATTTGATTCATACAAAA
* *
29216944 TATTATTTGTATGTATTTTACCGGG
196 TATTATTTGTATATATTTTACCAGG
29216969 AAATTAATATTCTTTTGGAAAGAATATAATTAATATTTGAATTTGATTCATACAAATTATTAATT
1 AAATTAATATTCTTTTGGAAAGAATATAATTAATATTTGAATTTGATTCATACAAATTATTAATT
* * * * *
29217034 GTATATATTTTAACGAATTTACTAATATGAATAGTTATATTAATTAATTTTGGTTAAAATATAAA
66 GTATATATTTTACCGAATTTACTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAA
* *
29217099 AGACATGGAAATTAATATTCTTTTGGAAAGAATATAATT
131 AGACATGAAAATTAATATTCTTTTGGAAATAATATAATT
29217138 TATTTTTCTA
Statistics
Matches: 368, Mismatches: 21, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
220 318 0.86
221 50 0.14
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.42
Consensus pattern (220 bp):
AAATTAATATTCTTTTGGAAAGAATATAATTAATATTTGAATTTGATTCATACAAATTATTAATT
GTATATATTTTACCGAATTTACTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAA
AGACATGAAAATTAATATTCTTTTGGAAATAATATAATTAAGATATGAATTTGATTCATACAAAA
TATTATTTGTATATATTTTACCAGG
Found at i:29217024 original size:82 final size:82
Alignment explanation
Indices: 29216887--29217045 Score: 264
Period size: 82 Copynumber: 1.9 Consensus size: 82
29216877 AAAGACATTA
* *
29216887 AAATTAATATTCTTTTGGAAATAATATAATTAAGATATGAATTTGATTCATACAAAATATTATTT
1 AAATTAATATTCTTTTGGAAAGAATATAATTAAGATATGAATTTGATTCATACAAAATATTAATT
*
29216952 GTATGTATTTTACCGGG
66 GTATATATTTTACCGGG
* * *
29216969 AAATTAATATTCTTTTGGAAAGAATATAATTAATATTTGAATTTGATTCATACAAATTATTAATT
1 AAATTAATATTCTTTTGGAAAGAATATAATTAAGATATGAATTTGATTCATACAAAATATTAATT
29217034 GTATATATTTTA
66 GTATATATTTTA
29217046 ACGAATTTAC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 71 1.00
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (82 bp):
AAATTAATATTCTTTTGGAAAGAATATAATTAAGATATGAATTTGATTCATACAAAATATTAATT
GTATATATTTTACCGGG
Found at i:29221179 original size:101 final size:101
Alignment explanation
Indices: 29221004--29221210 Score: 351
Period size: 101 Copynumber: 2.0 Consensus size: 101
29220994 AAAGTCCATA
* * **
29221004 AAATTTAATAAAAAATCATTTAAACCATATTGTGAGAGTATGATCAATTTGTGTTCCCGAACACC
1 AAATTTAACAAAAAATCATTTAAACCATATTATGAGAGTATGATCAATCCGTGTTCCCGAACACC
29221069 GCCCCAATCCTAAGTCCACGAATTACCTGAAATGAT
66 GCCCCAATCCTAAGTCCACGAATTACCTGAAATGAT
*
29221105 AAATTTAACAAAAAATCATTTAAACCATATTATGATAGTATGATCAATCCGTGTTCCCGAACACC
1 AAATTTAACAAAAAATCATTTAAACCATATTATGAGAGTATGATCAATCCGTGTTCCCGAACACC
* *
29221170 GCCCCAATCCTAAGTCCATGATTTACCTGAAATGAT
66 GCCCCAATCCTAAGTCCACGAATTACCTGAAATGAT
29221206 AAATT
1 AAATT
29221211 AGTATGGTGA
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 99 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (101 bp):
AAATTTAACAAAAAATCATTTAAACCATATTATGAGAGTATGATCAATCCGTGTTCCCGAACACC
GCCCCAATCCTAAGTCCACGAATTACCTGAAATGAT
Found at i:29224427 original size:70 final size:70
Alignment explanation
Indices: 29224313--29224453 Score: 257
Period size: 70 Copynumber: 2.0 Consensus size: 70
29224303 AAGTTTCATT
*
29224313 AAAATTTATGAAGTGGTTTTAAAGTATTATATTTTTTTGGTAAATAATATCTCACTGAAATTTAT
1 AAAATTTATGAAGTGGTTTTAAAGTATTATATTTTTTTGATAAATAATATCTCACTGAAATTTAT
29224378 ACGCC
66 ACGCC
29224383 AAAATTTATGGAA-TGGTTTTAAAGTATTATATTTTTTTGATAAATAATATCTCACTGAAATTTA
1 AAAATTTAT-GAAGTGGTTTTAAAGTATTATATTTTTTTGATAAATAATATCTCACTGAAATTTA
29224447 TACGCC
65 TACGCC
29224453 A
1 A
29224454 TTTAACTTAT
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
70 66 0.96
71 3 0.04
ACGTcount: A:0.37, C:0.09, G:0.12, T:0.43
Consensus pattern (70 bp):
AAAATTTATGAAGTGGTTTTAAAGTATTATATTTTTTTGATAAATAATATCTCACTGAAATTTAT
ACGCC
Found at i:29227160 original size:37 final size:37
Alignment explanation
Indices: 29227110--29227185 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
29227100 CTGAGAAAAG
29227110 TATATTTTCTGGGTCATGTTATCTATATTAATGGCAT
1 TATATTTTCTGGGTCATGTTATCTATATTAATGGCAT
29227147 TATATTTTCTGGGTCATGTTATCTATATTAATGGCAT
1 TATATTTTCTGGGTCATGTTATCTATATTAATGGCAT
29227184 TA
1 TA
29227186 AAGTAGATCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.11, G:0.16, T:0.49
Consensus pattern (37 bp):
TATATTTTCTGGGTCATGTTATCTATATTAATGGCAT
Found at i:29228660 original size:9 final size:9
Alignment explanation
Indices: 29228647--29228688 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
29228637 TTTATTCAAG
29228647 TTATTATAA
1 TTATTATAA
*
29228656 ATATTAT-A
1 TTATTATAA
29228664 TCTA-TATAA
1 T-TATTATAA
29228673 TTATTATAA
1 TTATTATAA
29228682 TTATTAT
1 TTATTAT
29228689 TATTTATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
8 6 0.21
9 22 0.79
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (9 bp):
TTATTATAA
Found at i:29228699 original size:26 final size:25
Alignment explanation
Indices: 29228637--29228700 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 25
29228627 AATCCAAGAT
29228637 TTTATTCAAGTTATTATAAATATTATA
1 TTTATT-AA-TTATTATAAATATTATA
* *
29228664 TCTATATAATTATTATAATTATTATTA
1 TTTAT-TAATTATTATAAATATTA-TA
29228691 TTTATTAATT
1 TTTATTAATT
29228701 GTAATTTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
26 19 0.59
27 12 0.38
28 1 0.03
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (25 bp):
TTTATTAATTATTATAAATATTATA
Done.