Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70906002
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.33
Warning! 1642329 characters in sequence are not A, C, G, or T
File 33 of 221
Found at i:8949191 original size:47 final size:47
Alignment explanation
Indices: 8949122--8949352 Score: 444
Period size: 47 Copynumber: 4.9 Consensus size: 47
8949112 ATATATGCCA
*
8949122 CATTTAACCATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
1 CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
*
8949169 CATTTAAACATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
1 CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
8949216 CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
1 CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
8949263 CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
1 CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
8949310 CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGG
1 CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGG
8949353 TTCAACTCAT
Statistics
Matches: 182, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 182 1.00
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (47 bp):
CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
Found at i:8950270 original size:43 final size:43
Alignment explanation
Indices: 8950213--8950331 Score: 161
Period size: 43 Copynumber: 2.8 Consensus size: 43
8950203 AATGCCATCG
*
8950213 TCCCAGATGTGGTCTTACATGTAATCACATATCGATGCC-ACT
1 TCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCGACT
* *
8950255 GTCCCAGACAG-GGTCTTACACGTAATCAGATATCGATGCCGACT
1 -TCCCAGAC-GTGGTCTTACATGTAATCACATATCGATGCCGACT
* *
8950299 TCCCAGACGTGGTCTTACATGAAAACACATATC
1 TCCCAGACGTGGTCTTACATGTAATCACATATC
8950332 AGAATCCTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
42 1 0.02
43 61 0.92
44 4 0.06
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCGACT
Found at i:8951256 original size:28 final size:28
Alignment explanation
Indices: 8951216--8951272 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
8951206 TATGTTTGTT
8951216 TTTATTATAATAA-CTTTATAATATATTA
1 TTTATTATAATAACCTTTATAAT-TATTA
*
8951244 TTTATTATTATAACCTTTATAATTATTA
1 TTTATTATAATAACCTTTATAATTATTA
8951272 T
1 T
8951273 AAAAACTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATTATAATAACCTTTATAATTATTA
Found at i:8953274 original size:14 final size:11
Alignment explanation
Indices: 8953244--8953275 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8953234 AACCCGAGTT
8953244 TTTTATTATTA
1 TTTTATTATTA
8953255 TTTTATTATTA
1 TTTTATTATTA
*
8953266 TTTAATTATT
1 TTTTATTATT
8953276 TGCATGATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTTATTATTA
Found at i:8956052 original size:25 final size:25
Alignment explanation
Indices: 8956024--8956095 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 25
8956014 AACTCACATG
8956024 AGCTTCCCAATTAACAGCTCGTATC
1 AGCTTCCCAATTAACAGCTCGTATC
* ** * *
8956049 AGCTTCCTAATTTGCAGCTCATATG
1 AGCTTCCCAATTAACAGCTCGTATC
* *
8956074 AGCTTCCCGATTCACAGCTCGT
1 AGCTTCCCAATTAACAGCTCGT
8956096 GAGAGCATAC
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.31
Consensus pattern (25 bp):
AGCTTCCCAATTAACAGCTCGTATC
Found at i:8967956 original size:27 final size:27
Alignment explanation
Indices: 8967925--8968102 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
8967915 TAAATTGTAC
8967925 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
8967952 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
8967978 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
8968006 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
8968034 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
8968061 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
8968088 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
8968103 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:8968039 original size:82 final size:81
Alignment explanation
Indices: 8967926--8968081 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
8967916 AAATTGTACA
* *
8967926 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
8967990 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
8968007 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
8968072 TGCGAGTTGA
65 TGCGAATTGA
8968082 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:8968093 original size:82 final size:81
Alignment explanation
Indices: 8967922--8968102 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
8967912 GATTAAATTG
* *
8967922 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
8967987 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
8968003 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
8968067 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
8968085 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
8968103 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:8968113 original size:27 final size:27
Alignment explanation
Indices: 8968007--8968113 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
8967997 TGACCATGCG
* * * *
8968007 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
8968035 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
8968062 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
8968089 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
8968114 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:8970156 original size:21 final size:21
Alignment explanation
Indices: 8970118--8970186 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
8970108 CACAGAAGGA
* * *
8970118 CATAAGTGCTAAATGGAAACC
1 CATAAGAGCTGAACGGAAACC
* * *
8970139 CATAAGAGTTGAACGGAAGCT
1 CATAAGAGCTGAACGGAAACC
*
8970160 CATAGGAGCTGAACGGAAACC
1 CATAAGAGCTGAACGGAAACC
8970181 CATAAG
1 CATAAG
8970187 GGTTAATCTG
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.41, C:0.19, G:0.25, T:0.16
Consensus pattern (21 bp):
CATAAGAGCTGAACGGAAACC
Found at i:8970200 original size:42 final size:41
Alignment explanation
Indices: 8970132--8970266 Score: 135
Period size: 42 Copynumber: 3.2 Consensus size: 41
8970122 AGTGCTAAAT
* * * *
8970132 GGAAACCCATAAGAGTTGAACGGAAGCTCATAGGAGCTGAAC
1 GGAAACCCATAAGGGTT-AACAGAAGCTCAAAAGAGCTGAAC
* * *
8970174 GGAAACCCATAAGGGTTAATCTGAAGCTCAGAAGAGCTAAAC
1 GGAAACCCATAAGGGTTAA-CAGAAGCTCAAAAGAGCTGAAC
* * *
8970216 TGAAACCTATTAGGGTTAAACAGAAGCTCAAAAGAGCTGAAC
1 GGAAACCCATAAGGGTT-AACAGAAGCTCAAAAGAGCTGAAC
**
8970258 TAAAACCCA
1 GGAAACCCA
8970267 AGTGCTAAAC
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
41 2 0.03
42 74 0.95
43 2 0.03
ACGTcount: A:0.41, C:0.19, G:0.23, T:0.16
Consensus pattern (41 bp):
GGAAACCCATAAGGGTTAACAGAAGCTCAAAAGAGCTGAAC
Found at i:8970345 original size:41 final size:39
Alignment explanation
Indices: 8970270--8970396 Score: 110
Period size: 42 Copynumber: 3.1 Consensus size: 39
8970260 AAACCCAAGT
* * * * *
8970270 GCTAAACGGAAACTCGTAAAGGTTGAACGAAAGCTGATAGGA
1 GCTAAACGGAAACCCAT-AAGGTT-AACG-AAGCTCAGAAGA
8970312 GCTAAACGGAAACCCATAAGGTTAATCTGAAGCTCAGAAGA
1 GCTAAACGGAAACCCATAAGGTTAA-C-GAAGCTCAGAAGA
* * *
8970353 GCTAAACTGAAACCCATTAGGGTTAAACAGAAGCTCAAAAGA
1 GCTAAACGGAAACCCA-TAAGGTT-AAC-GAAGCTCAGAAGA
8970395 GC
1 GC
8970397 AGAAGTGAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
40 2 0.03
41 31 0.43
42 37 0.51
43 2 0.03
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.17
Consensus pattern (39 bp):
GCTAAACGGAAACCCATAAGGTTAACGAAGCTCAGAAGA
Found at i:8970389 original size:144 final size:145
Alignment explanation
Indices: 8970121--8970410 Score: 467
Period size: 144 Copynumber: 2.0 Consensus size: 145
8970111 AGAAGGACAT
* * *
8970121 AAGTGCTAAATGGAAACCCATAAGAGTTGAACGGAAGCTCATAGGAGCTGAACGGAAACCCATAA
1 AAGTGCTAAACGGAAACCCATAAGAGTTGAACGAAAGCTCATAGGAGCTAAACGGAAACCCATAA
*
8970186 GGGTTAATCTGAAGCTCAGAAGAGCTAAACTGAAACCTATTAGGGTTAAACAGAAGCTCAAAAGA
66 GGGTTAATCTGAAGCTCAGAAGAGCTAAACTGAAACCCATTAGGGTTAAACAGAAGCTCAAAAGA
*
8970251 GCTGAACTAAAACCC
131 GCAGAACTAAAACCC
* * *
8970266 AAGTGCTAAACGGAAACTCGTAA-AGGTTGAACGAAAGCTGATAGGAGCTAAACGGAAACCCATA
1 AAGTGCTAAACGGAAACCCATAAGA-GTTGAACGAAAGCTCATAGGAGCTAAACGGAAACCCATA
8970330 A-GGTTAATCTGAAGCTCAGAAGAGCTAAACTGAAACCCATTAGGGTTAAACAGAAGCTCAAAAG
65 AGGGTTAATCTGAAGCTCAGAAGAGCTAAACTGAAACCCATTAGGGTTAAACAGAAGCTCAAAAG
* *
8970394 AGCAGAAGTGAAACCC
130 AGCAGAACTAAAACCC
8970410 A
1 A
8970411 GAAGGGTTAA
Statistics
Matches: 134, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
144 77 0.57
145 57 0.43
ACGTcount: A:0.42, C:0.18, G:0.23, T:0.17
Consensus pattern (145 bp):
AAGTGCTAAACGGAAACCCATAAGAGTTGAACGAAAGCTCATAGGAGCTAAACGGAAACCCATAA
GGGTTAATCTGAAGCTCAGAAGAGCTAAACTGAAACCCATTAGGGTTAAACAGAAGCTCAAAAGA
GCAGAACTAAAACCC
Found at i:8970395 original size:42 final size:41
Alignment explanation
Indices: 8970310--8970422 Score: 129
Period size: 42 Copynumber: 2.7 Consensus size: 41
8970300 AAGCTGATAG
* * * * *
8970310 GAGCTAAACGGAAACCCATAAGGTTAATCTGAAGCTCAGAA
1 GAGCTAAACTGAAACCCATAGGGTTAAACAGAAGCTCAAAA
8970351 GAGCTAAACTGAAACCCATTAGGGTTAAACAGAAGCTCAAAA
1 GAGCTAAACTGAAACCCA-TAGGGTTAAACAGAAGCTCAAAA
* *
8970393 GAGC-AGAAGTGAAACCCAGAAGGGTTAAAC
1 GAGCTA-AACTGAAACCCA-TAGGGTTAAAC
8970423 TAAAACTCAT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 18 0.29
42 44 0.71
ACGTcount: A:0.43, C:0.19, G:0.23, T:0.15
Consensus pattern (41 bp):
GAGCTAAACTGAAACCCATAGGGTTAAACAGAAGCTCAAAA
Found at i:8977651 original size:46 final size:43
Alignment explanation
Indices: 8977578--8977676 Score: 119
Period size: 46 Copynumber: 2.2 Consensus size: 43
8977568 AATAATAACA
*
8977578 GATACACGGTGGATTCAGCACACAGCAACCACCCTTTGTAATCAAT
1 GATAC-CGGTGGATTCAGCACACAGCAACCA-CC-TTATAATCAAT
* *
8977624 GATATCCGGTGGGA-TCAGCACATAGCAACCACCTTATAATTAAT
1 GATA-CCGGT-GGATTCAGCACACAGCAACCACCTTATAATCAAT
8977668 GATACCGGT
1 GATACCGGT
8977677 TCACATAGTA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
43 5 0.10
44 13 0.27
45 2 0.04
46 24 0.50
47 4 0.08
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.23
Consensus pattern (43 bp):
GATACCGGTGGATTCAGCACACAGCAACCACCTTATAATCAAT
Found at i:8977740 original size:51 final size:51
Alignment explanation
Indices: 8977682--8977873 Score: 285
Period size: 51 Copynumber: 3.8 Consensus size: 51
8977672 CCGGTTCACA
* *
8977682 TAGTAGCCTGCACATAGTACTACATATGTCACCATCGCTATCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTCACCATCGCTATCTGGTACACG
* * ** * *
8977733 TAGTAGCCTGCACATAGTACTACACACGTGATCAAAGCTATCTGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTCACCATCGCTATCTGGTACACG
* *
8977784 TAGTAGCCTGCACATAGTACTACATATGTCACCATCGCTATCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTCACCATCGCTATCTGGTACACG
*
8977835 TAGTAGCCTGCACATAGTACTACACACGTGACCATCGCT
1 TAGTAGCCTGCACATAGTACTACACACGTCACCATCGCT
8977874 TTCACTTTCA
Statistics
Matches: 122, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 122 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTCACCATCGCTATCTGGTACACG
Found at i:8977856 original size:102 final size:102
Alignment explanation
Indices: 8977680--8977865 Score: 372
Period size: 102 Copynumber: 1.8 Consensus size: 102
8977670 TACCGGTTCA
8977680 CATAGTAGCCTGCACATAGTACTACATATGTCACCATCGCTATCTGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACATATGTCACCATCGCTATCTGGTACACGTAGTAGCCTGCA
8977745 CATAGTACTACACACGTGATCAAAGCTATCTGGTACG
66 CATAGTACTACACACGTGATCAAAGCTATCTGGTACG
8977782 CATAGTAGCCTGCACATAGTACTACATATGTCACCATCGCTATCTGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACATATGTCACCATCGCTATCTGGTACACGTAGTAGCCTGCA
8977847 CATAGTACTACACACGTGA
66 CATAGTACTACACACGTGA
8977866 CCATCGCTTT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 84 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACATATGTCACCATCGCTATCTGGTACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCAAAGCTATCTGGTACG
Found at i:8977888 original size:102 final size:102
Alignment explanation
Indices: 8977675--8977899 Score: 351
Period size: 102 Copynumber: 2.2 Consensus size: 102
8977665 AATGATACCG
8977675 GTTCACATAGTAGCCTGCACATAGTACTACATATGTCACCATCGCTATCTGGTACACGTAGTAGC
1 GTTCACATAGTAGCCTGCACATAGTACTACATATGTCACCATCGCTATCTGGTACACGTAGTAGC
* **
8977740 CTGCACATAGTACTACACACGTGATCAAAGCTATCTG
66 CTGCACATAGTACTACACACGTGACCAAAGCTATCAC
* *
8977777 GTACGCATAGTAGCCTGCACATAGTACTACATATGTCACCATCGCTATCTGGTACACGTAGTAGC
1 GTTCACATAGTAGCCTGCACATAGTACTACATATGTCACCATCGCTATCTGGTACACGTAGTAGC
** *
8977842 CTGCACATAGTACTACACACGTGACCATCGCTTTCAC
66 CTGCACATAGTACTACACACGTGACCAAAGCTATCAC
* * *
8977879 TTTCACATAGTGGCCTACACA
1 GTTCACATAGTAGCCTGCACA
8977900 CAGTCTATGC
Statistics
Matches: 110, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
102 110 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (102 bp):
GTTCACATAGTAGCCTGCACATAGTACTACATATGTCACCATCGCTATCTGGTACACGTAGTAGC
CTGCACATAGTACTACACACGTGACCAAAGCTATCAC
Found at i:8984124 original size:41 final size:41
Alignment explanation
Indices: 8983941--8984123 Score: 266
Period size: 41 Copynumber: 4.5 Consensus size: 41
8983931 CAGGCTCAGC
* *
8983941 GCCTAGCAGG-TATATTGCCAGTGAA-TCAATTCAGGCT-TAAA
1 GCCTAGCAGGCTA-AGTGCCAGTGAACTGAA-TCAGGCTAT-AA
8983982 GCCTAGCAGGCTAAGTGCCAGTGAACTGAATCAGGCTATAA
1 GCCTAGCAGGCTAAGTGCCAGTGAACTGAATCAGGCTATAA
8984023 GCCTAGCAGGCTAAGTGCCAGTGAACTGAATCAGGCTATAA
1 GCCTAGCAGGCTAAGTGCCAGTGAACTGAATCAGGCTATAA
* *
8984064 GCCTAGCAGGCTAAGTGCC-GATGATCTGAATCAGGCTTTAA
1 GCCTAGCAGGCTAAGTGCCAG-TGAACTGAATCAGGCTATAA
8984105 GCCTAGCAGGCTAAGTGCC
1 GCCTAGCAGGCTAAGTGCC
8984124 GGAAAATCTG
Statistics
Matches: 134, Mismatches: 4, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
40 1 0.01
41 127 0.95
42 6 0.04
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (41 bp):
GCCTAGCAGGCTAAGTGCCAGTGAACTGAATCAGGCTATAA
Found at i:8984353 original size:36 final size:36
Alignment explanation
Indices: 8984313--8984428 Score: 98
Period size: 36 Copynumber: 3.3 Consensus size: 36
8984303 TATATATGTG
8984313 TGTGCATTCGGCATATGTGAATT-ATAAGTAT-ATATA
1 TGTGCATTCGGCATATGTG-ATTGATAAGTATAAT-TA
* * *
8984349 TGTGCATTCAGCACATGTGGTTGATAAGTATAATTA
1 TGTGCATTCGGCATATGTGATTGATAAGTATAATTA
* * * *
8984385 TTTGCTTTTGGCATATGTGTTTGAATAA-TAT-A-TA
1 TGTGCATTCGGCATATGTGATTG-ATAAGTATAATTA
*
8984419 TATGCATTCG
1 TGTGCATTCG
8984429 AAGAAGTGCA
Statistics
Matches: 65, Mismatches: 12, Indels: 8
0.76 0.14 0.09
Matches are distributed among these distances:
34 9 0.14
35 3 0.05
36 47 0.72
37 6 0.09
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.41
Consensus pattern (36 bp):
TGTGCATTCGGCATATGTGATTGATAAGTATAATTA
Found at i:8988451 original size:33 final size:31
Alignment explanation
Indices: 8988389--8988468 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 31
8988379 CTAAAGTTCA
8988389 GAACAACTATTATTTAGAATAATGGTGTTTTAG
1 GAACAACTATTATTTAGAATAATGGTG-TTT-G
* **
8988422 GAACAACTA-TGTTTAGAATAACTTTTGTTTG
1 GAACAACTATTATTTAGAATAA-TGGTGTTTG
8988453 GAACAACT-TCTATTTA
1 GAACAACTAT-TATTTA
8988469 AAACAATTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
31 9 0.22
32 19 0.47
33 12 0.30
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (31 bp):
GAACAACTATTATTTAGAATAATGGTGTTTG
Found at i:8998924 original size:15 final size:15
Alignment explanation
Indices: 8998904--8998933 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8998894 TAAAAATTTT
8998904 AAGCACTTCTGAAAA
1 AAGCACTTCTGAAAA
8998919 AAGCACTTCTGAAAA
1 AAGCACTTCTGAAAA
8998934 GCCAAAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.13, T:0.20
Consensus pattern (15 bp):
AAGCACTTCTGAAAA
Found at i:9001610 original size:18 final size:18
Alignment explanation
Indices: 9001584--9001630 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
9001574 TTAATAAAAA
*
9001584 TATAAAAAAATATAAAATT
1 TATATAAAAAT-TAAAATT
*
9001603 TAT-TAAAAATTAAATTT
1 TATATAAAAATTAAAATT
*
9001620 TTTATAAAAAT
1 TATATAAAAAT
9001631 CGTAAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 8 0.33
18 13 0.54
19 3 0.12
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TATATAAAAATTAAAATT
Found at i:9001623 original size:47 final size:45
Alignment explanation
Indices: 9001531--9001656 Score: 121
Period size: 47 Copynumber: 2.7 Consensus size: 45
9001521 ATGCTCTTAT
* *
9001531 TAAAAATA-AAAAAAACAATAAAATTTAAAAAAATTATTTAATTTTAA
1 TAAAAATATAAAAAAA-TATAAAATTTAAAAAAATTAATT-ATTTT-A
*
9001578 TAAAAATATAAAAAAATATAAAATTTATTAAAAATTAAATT-TTTTA
1 TAAAAATATAAAAAAATATAAAATTTA-AAAAAATT-AATTATTTTA
* *
9001624 TAAAAATCGTAAAAAAATAAAAAAATTGTAAAA
1 TAAAAAT-ATAAAAAAAT-ATAAAATT-TAAAA
9001657 TTTTATAAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
46 8 0.12
47 31 0.46
48 23 0.34
49 5 0.07
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (45 bp):
TAAAAATATAAAAAAATATAAAATTTAAAAAAATTAATTATTTTA
Found at i:9001666 original size:19 final size:19
Alignment explanation
Indices: 9001619--9001681 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
9001609 AAATTAAATT
9001619 TTTTATAAAAATCGTAAAA
1 TTTTATAAAAATCGTAAAA
*** * *
9001638 AAATAAAAAAATTGTAAAA
1 TTTTATAAAAATCGTAAAA
*
9001657 TTTTATAAAAATCATAAAAA
1 TTTTATAAAAATCGT-AAAA
9001677 TTTTA
1 TTTTA
9001682 ATGACCTCTA
Statistics
Matches: 32, Mismatches: 11, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
19 23 0.72
20 9 0.28
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (19 bp):
TTTTATAAAAATCGTAAAA
Found at i:9001889 original size:10 final size:10
Alignment explanation
Indices: 9001874--9001899 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
9001864 TTCTTATGAC
9001874 TTTATAAAAT
1 TTTATAAAAT
9001884 TTTATAAAAT
1 TTTATAAAAT
9001894 TTTATA
1 TTTATA
9001900 TTTCTATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
TTTATAAAAT
Found at i:9001937 original size:56 final size:58
Alignment explanation
Indices: 9001815--9001943 Score: 158
Period size: 56 Copynumber: 2.3 Consensus size: 58
9001805 TTACAATAGT
** * * *
9001815 TTTTTATAATTTTTTATGAAATTTATATTTCTTTACATTTTGTATAATTTTCTTATGA
1 TTTTTATAAAATTTTATAAAATTTATATTTCTATACATTTTGTATAATTTTCTTACGA
* *
9001873 -CTTTATAAAATTTTATAAAATTTTATATTTCTATATA-TTT-TATAATTTT-TTACGA
1 TTTTTATAAAATTTTATAAAA-TTTATATTTCTATACATTTTGTATAATTTTCTTACGA
9001928 TTTTTATAAAATTTTA
1 TTTTTATAAAATTTTA
9001944 CAATTTTACA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
55 5 0.08
56 23 0.38
57 19 0.31
58 14 0.23
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.60
Consensus pattern (58 bp):
TTTTTATAAAATTTTATAAAATTTATATTTCTATACATTTTGTATAATTTTCTTACGA
Found at i:9005863 original size:38 final size:38
Alignment explanation
Indices: 9005811--9005907 Score: 140
Period size: 38 Copynumber: 2.5 Consensus size: 38
9005801 TAATTTAGTT
* *
9005811 TGAGTCTTTAATTATGTCATAATTTGAACATCATTAATA
1 TGAGT-TTTAATTATGTCATAATCTGAACAACATTAATA
*
9005850 TGAGTTTTAATTATGTTATAATCTGAACAACATTAATA
1 TGAGTTTTAATTATGTCATAATCTGAACAACATTAATA
* *
9005888 AGGGTTTTAATTATGTCATA
1 TGAGTTTTAATTATGTCATA
9005908 GTTTATGACA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 47 0.90
39 5 0.10
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.43
Consensus pattern (38 bp):
TGAGTTTTAATTATGTCATAATCTGAACAACATTAATA
Found at i:9011032 original size:15 final size:15
Alignment explanation
Indices: 9011012--9011045 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
9011002 GATATGTGTA
9011012 CCCTACTATTTATTT
1 CCCTACTATTTATTT
9011027 CCCTACTATTTATTT
1 CCCTACTATTTATTT
9011042 CCCT
1 CCCT
9011046 TTCCCTAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.18, C:0.32, G:0.00, T:0.50
Consensus pattern (15 bp):
CCCTACTATTTATTT
Found at i:9011871 original size:26 final size:25
Alignment explanation
Indices: 9011823--9011898 Score: 98
Period size: 25 Copynumber: 3.0 Consensus size: 25
9011813 TTTCTCATAC
* * *
9011823 CAATTTTACTCTAGTAAAATTTTGA
1 CAATTTTACCCCAATAAAATTTTGA
*
9011848 CAATTTTACCCCCGATAAAATTTTGA
1 CAATTTTA-CCCCAATAAAATTTTGA
*
9011874 CTATTTTACCCCAATAAAATTTTGA
1 CAATTTTACCCCAATAAAATTTTGA
9011899 GAAAATTCGT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
25 24 0.55
26 20 0.45
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (25 bp):
CAATTTTACCCCAATAAAATTTTGA
Found at i:9011891 original size:25 final size:26
Alignment explanation
Indices: 9011837--9011898 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
9011827 TTTACTCTAG
*
9011837 TAAAATTTTGACAATTTTACCCCCGA
1 TAAAATTTTGACAATTTTACCCCCAA
*
9011863 TAAAATTTTGACTATTTTA-CCCCAA
1 TAAAATTTTGACAATTTTACCCCCAA
9011888 TAAAATTTTGA
1 TAAAATTTTGA
9011899 GAAAATTCGT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
25 16 0.47
26 18 0.53
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (26 bp):
TAAAATTTTGACAATTTTACCCCCAA
Found at i:9013477 original size:15 final size:15
Alignment explanation
Indices: 9013457--9013486 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9013447 TCTGTGACAA
9013457 AACTTTCACCCAAAT
1 AACTTTCACCCAAAT
*
9013472 AACTTTCCCCCAAAT
1 AACTTTCACCCAAAT
9013487 GCATATGCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.27
Consensus pattern (15 bp):
AACTTTCACCCAAAT
Found at i:9013669 original size:31 final size:31
Alignment explanation
Indices: 9013582--9013669 Score: 124
Period size: 31 Copynumber: 2.8 Consensus size: 31
9013572 GGTCTGAAAA
*
9013582 ATAACATACATAATATAT-ACACTAAAATATC
1 ATAACATACATAATAT-TCACACTAATATATC
*
9013613 ATAACATACATAATATGCACACTAATATATC
1 ATAACATACATAATATTCACACTAATATATC
* *
9013644 ATAAAATACATAATATTCATACTAAT
1 ATAACATACATAATATTCACACTAAT
9013670 GTACATACTA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.31
Consensus pattern (31 bp):
ATAACATACATAATATTCACACTAATATATC
Found at i:9013799 original size:18 final size:18
Alignment explanation
Indices: 9013771--9013814 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
9013761 AATACAATAC
9013771 AATAC-AATACAATATAT
1 AATACAAATACAATATAT
*
9013788 AATACAAATACAATATCT
1 AATACAAATACAATATAT
9013806 AA-ACAAATA
1 AATACAAATA
9013815 AGACACTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 12 0.48
18 13 0.52
ACGTcount: A:0.61, C:0.14, G:0.00, T:0.25
Consensus pattern (18 bp):
AATACAAATACAATATAT
Found at i:9013802 original size:5 final size:5
Alignment explanation
Indices: 9013736--9013784 Score: 98
Period size: 5 Copynumber: 9.8 Consensus size: 5
9013726 CCAACAAAAA
9013736 AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATA
1 AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATA
9013785 TATAATACAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.61, C:0.18, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAC
Found at i:9014305 original size:10 final size:12
Alignment explanation
Indices: 9014274--9014307 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
9014264 ATTTTGATTG
9014274 TAATAAATTTAA
1 TAATAAATTTAA
9014286 TAATAAATTTAA
1 TAATAAATTTAA
9014298 -AA-AAATTTAA
1 TAATAAATTTAA
9014308 GAAATAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 8 0.36
11 2 0.09
12 12 0.55
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TAATAAATTTAA
Found at i:9022540 original size:35 final size:35
Alignment explanation
Indices: 9022489--9022605 Score: 153
Period size: 35 Copynumber: 3.3 Consensus size: 35
9022479 ACTCTCTGTT
*
9022489 TTGGTGTGTTTTGGAAGGATTAGCTCTTACGAGCA
1 TTGGTGTGTTTAGGAAGGATTAGCTCTTACGAGCA
* *
9022524 TTGGTGTGTTTCGGAAGGATTAGCTTTTACGAGCA
1 TTGGTGTGTTTAGGAAGGATTAGCTCTTACGAGCA
* * * **
9022559 TTGGTGTGTTTAAGATGGATTGGCTCTTGTGAGCA
1 TTGGTGTGTTTAGGAAGGATTAGCTCTTACGAGCA
9022594 TCTGGTGTGTTT
1 T-TGGTGTGTTT
9022606 TGGTTGGATT
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
35 62 0.86
36 10 0.14
ACGTcount: A:0.17, C:0.10, G:0.32, T:0.40
Consensus pattern (35 bp):
TTGGTGTGTTTAGGAAGGATTAGCTCTTACGAGCA
Found at i:9023088 original size:18 final size:18
Alignment explanation
Indices: 9023061--9023099 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
9023051 TTATCATTTA
*
9023061 TAATACATGTGAATTATG
1 TAATACATGTGAATTAGG
*
9023079 TAATATATGTGAATTAGG
1 TAATACATGTGAATTAGG
9023097 TAA
1 TAA
9023100 AATGTGTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (18 bp):
TAATACATGTGAATTAGG
Found at i:9027835 original size:37 final size:38
Alignment explanation
Indices: 9027781--9027853 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 38
9027771 TTTTCATAAT
* *
9027781 TTCACTTTTTCACTTTCAA-T-AACTATTTAATTCAAAA
1 TTCACTTTTCCACTTTCAAGTCAA-TATTCAATTCAAAA
*
9027818 TTCACTTTTCCATTTTCAAGTCAATATTCAATTCAA
1 TTCACTTTTCCACTTTCAAGTCAATATTCAATTCAA
9027854 TTCCACACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 17 0.55
38 12 0.39
39 2 0.06
ACGTcount: A:0.33, C:0.21, G:0.01, T:0.45
Consensus pattern (38 bp):
TTCACTTTTCCACTTTCAAGTCAATATTCAATTCAAAA
Found at i:9027884 original size:23 final size:22
Alignment explanation
Indices: 9027841--9027884 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
9027831 TTTCAAGTCA
9027841 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
9027864 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
9027885 TTAAGCATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:9028027 original size:46 final size:43
Alignment explanation
Indices: 9027945--9028052 Score: 130
Period size: 46 Copynumber: 2.4 Consensus size: 43
9027935 ACACTTCGGA
9027945 ATAA-TAATAGATACACGGTGGATTCAGCACACAGCAACCACCCTTT
1 ATAATTAAT-GATAC-CGGTGGATTCAGCACACAGCAACCA-CC-TT
* *
9027991 GTAATTAATGATATCCGGTGGGA-TCAGCACATAGCAACCACCTT
1 ATAATTAATGATA-CCGGT-GGATTCAGCACACAGCAACCACCTT
9028035 ATAATTAATGATACCGGT
1 ATAATTAATGATACCGGT
9028053 TCATATAGTA
Statistics
Matches: 56, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
43 5 0.09
44 14 0.25
45 2 0.04
46 27 0.48
47 8 0.14
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (43 bp):
ATAATTAATGATACCGGTGGATTCAGCACACAGCAACCACCTT
Found at i:9029836 original size:37 final size:38
Alignment explanation
Indices: 9029782--9029854 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 38
9029772 TTTTCATAAT
* *
9029782 TTCACTTTTTCACTTTCAA-T-AACTATTTAATTCAAAA
1 TTCACTTTTCCACTTTCAAGTCAA-TATTCAATTCAAAA
*
9029819 TTCACTTTTCCATTTTCAAGTCAATATTCAATTCAA
1 TTCACTTTTCCACTTTCAAGTCAATATTCAATTCAA
9029855 TTCCACACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 17 0.55
38 12 0.39
39 2 0.06
ACGTcount: A:0.33, C:0.21, G:0.01, T:0.45
Consensus pattern (38 bp):
TTCACTTTTCCACTTTCAAGTCAATATTCAATTCAAAA
Found at i:9029885 original size:23 final size:22
Alignment explanation
Indices: 9029842--9029885 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
9029832 TTTCAAGTCA
9029842 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
9029865 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
9029886 TTAAGCATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:9030028 original size:46 final size:43
Alignment explanation
Indices: 9029946--9030053 Score: 130
Period size: 46 Copynumber: 2.4 Consensus size: 43
9029936 ACACTTCGGA
9029946 ATAA-TAATAGATACACGGTGGATTCAGCACACAGCAACCACCCTTT
1 ATAATTAAT-GATAC-CGGTGGATTCAGCACACAGCAACCA-CC-TT
* *
9029992 GTAATTAATGATATCCGGTGGGA-TCAGCACATAGCAACCACCTT
1 ATAATTAATGATA-CCGGT-GGATTCAGCACACAGCAACCACCTT
9030036 ATAATTAATGATACCGGT
1 ATAATTAATGATACCGGT
9030054 TCATATAGTA
Statistics
Matches: 56, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
43 5 0.09
44 14 0.25
45 2 0.04
46 27 0.48
47 8 0.14
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (43 bp):
ATAATTAATGATACCGGTGGATTCAGCACACAGCAACCACCTT
Found at i:9030117 original size:51 final size:50
Alignment explanation
Indices: 9030059--9030243 Score: 192
Period size: 51 Copynumber: 3.7 Consensus size: 50
9030049 CCGGTTCATA
* * *
9030059 TAGTAGCCTACACATAGTACTACACATGTGACCGTCATTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCGT-ATTATCCGGTACACG
* * * ***
9030110 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATCCGGTACGTA
1 TAGTAGCCTGCACATAGTACTACACACGTGACCGTA-TTATCCGGTACACG
* *** * * *
9030161 TAGTAGCTTGCACATAGTACTACACATACGA-CATATCTTTCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCGTAT-TATCCGGTACACG
9030211 TAGTAGCCTGCACATAGTACTACACACGTGACC
1 TAGTAGCCTGCACATAGTACTACACACGTGACC
9030244 ATCACTTTCA
Statistics
Matches: 106, Mismatches: 25, Indels: 6
0.77 0.18 0.04
Matches are distributed among these distances:
50 38 0.36
51 68 0.64
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCGTATTATCCGGTACACG
Found at i:9031557 original size:68 final size:67
Alignment explanation
Indices: 9031470--9031710 Score: 207
Period size: 68 Copynumber: 3.5 Consensus size: 67
9031460 TCACAACCTC
*
9031470 CAAAAATAGCTAGCGGACCTACGCTCCCAGTTGATATTCTAAGAGCTTGCAGATTTAAGCTCGCA
1 CAAACATAGCTAGCGGACCTACGCTCCCAGTTGATATTCTAAGAGCTTG-AGATTTAAGCTCGCA
9031535 ACT
65 ACT
* * * * * * * * * *
9031538 CCAACATAGCTAGCAGACCTACGCTCTCAGTTGATGTTATAA-AGGTTTGACGGTTTATGATCAC
1 CAAACATAGCTAGCGGACCTACGCTCCCAGTTGATATTCTAAGA-GCTTGA-GATTTAAGCTCGC
9031602 AACCT
64 AA-CT
* * * * * *
9031607 CTAAAAATAGCTA-CTGGGCCTATGCTCCTAGTTGATATTCTAAGAGCTCGTAGAGTTAAGCTCG
1 C-AAACATAGCTAGC-GGACCTACGCTCCCAGTTGATATTCTAAGAGCTTG-AGATTTAAGCTCG
*
9031671 TAACT
63 CAACT
* * * *
9031676 CTAACACAGCTAGCGGACCTACACTCCCAGCTGAT
1 CAAACATAGCTAGCGGACCTACGCTCCCAGTTGAT
9031711 GTTATAAAGG
Statistics
Matches: 129, Mismatches: 36, Indels: 16
0.71 0.20 0.09
Matches are distributed among these distances:
67 2 0.02
68 75 0.58
69 8 0.06
70 42 0.33
71 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (67 bp):
CAAACATAGCTAGCGGACCTACGCTCCCAGTTGATATTCTAAGAGCTTGAGATTTAAGCTCGCAA
CT
Found at i:9031687 original size:138 final size:138
Alignment explanation
Indices: 9031431--9032096 Score: 623
Period size: 138 Copynumber: 4.9 Consensus size: 138
9031421 TGTTTGTACT
* * *
9031431 TGATGTTATAATGGTTTGCCGGTTTATGATCACAACCTCCAAAAATAGCTAGCGGACCTACGCTC
1 TGATGTTATAAAGGTTTGACGGTTTATGATCACAACCTCCAAAAATAGCTAGCGGACCTATGCTC
* * * * *
9031496 CCAGTTGATATTCTAAGAGCTTGCAGATTTAAGCTCGCAACTCCAACATAGCTAGCAGACCTACG
66 CCAGTTGATATTCTAAGAGCTCGTAGAGTTAAGCTCGCAACTCCAACACAGCTAGCGGACCTACG
* *
9031561 CTCTCAGT
131 CTCCCAGC
* *
9031569 TGATGTTATAAAGGTTTGACGGTTTATGATCACAACCTCTAAAAATAGCTA-CTGGGCCTATGCT
1 TGATGTTATAAAGGTTTGACGGTTTATGATCACAACCTCCAAAAATAGCTAGC-GGACCTATGCT
* * *
9031633 CCTAGTTGATATTCTAAGAGCTCGTAGAGTTAAGCTCGTAACTCTAACACAGCTAGCGGACCTAC
65 CCCAGTTGATATTCTAAGAGCTCGTAGAGTTAAGCTCGCAACTCCAACACAGCTAGCGGACCTAC
*
9031698 ACTCCCAGC
130 GCTCCCAGC
* * ** * * * *
9031707 TGATGTTATAAAGGTTT-ATTGTTTTATGATTGCAACCTCCAAAAACAACTAACGAACCTATGCT
1 TGATGTTATAAAGGTTTGA-CGGTTTATGATCACAACCTCCAAAAATAGCTAGCGGACCTATGCT
* * * * * * *
9031771 CCCAGTTGATATTCAAAGAGCTCG-CGAAGTTAAGCTCACAGCTCCAGCACAACTAGCGGACATA
65 CCCAGTTGATATTCTAAGAGCTCGTAG-AGTTAAGCTCGCAACTCCAACACAGCTAGCGGACCTA
9031835 CGCTCCCAGC
129 CGCTCCCAGC
* * * * *
9031845 TGATGTTATAAAGATTTGCCGGTTTATGATTGA-AACCTTCAAAAATAGCTAGCGGACCTATACT
1 TGATGTTATAAAGGTTTGACGGTTTATGA-TCACAACCTCCAAAAATAGCTAGCGGACCTATGCT
* * * * *
9031909 ACTAGCTGATATT-TAAAGAGCT--T---G-T-A----G---CTCCAACATAGCTAGCTGACCTA
65 CCCAGTTGATATTCT-AAGAGCTCGTAGAGTTAAGCTCGCAACTCCAACACAGCTAGCGGACCTA
*
9031959 TGCTCCCAGC
129 CGCTCCCAGC
** ** * *
9031969 TGATGTTATAAAGGTTTTCCATTTTATGATCACAACCTCCAAAAATAGCTAGCAGACCTATGCCC
1 TGATGTTATAAAGGTTTGACGGTTTATGATCACAACCTCCAAAAATAGCTAGCGGACCTATGCTC
* * * * * * * * * * *
9032034 CCAGATGGTATTCAAAGAACTCGCAAAGTTAAGCTGGCATCTCCAACAAAGGTAGCAGACCTA
66 CCAGTTGATATTCTAAGAGCTCGTAGAGTTAAGCTCGCAACTCCAACACAGCTAGCGGACCTA
9032097 AGTTCATAAT
Statistics
Matches: 426, Mismatches: 78, Indels: 48
0.77 0.14 0.09
Matches are distributed among these distances:
123 2 0.00
124 94 0.22
129 1 0.00
130 1 0.00
131 2 0.00
132 1 0.00
133 1 0.00
135 1 0.00
137 3 0.01
138 318 0.75
139 2 0.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (138 bp):
TGATGTTATAAAGGTTTGACGGTTTATGATCACAACCTCCAAAAATAGCTAGCGGACCTATGCTC
CCAGTTGATATTCTAAGAGCTCGTAGAGTTAAGCTCGCAACTCCAACACAGCTAGCGGACCTACG
CTCCCAGC
Found at i:9032271 original size:51 final size:51
Alignment explanation
Indices: 9032206--9032303 Score: 151
Period size: 51 Copynumber: 1.9 Consensus size: 51
9032196 AGGTAGTTCG
* * *
9032206 AAATCTACTTAAGTTTAGAATTTTCTTAAGATTAAAATTTGCTTAAGCCCA
1 AAATCTACTTAAGTTCAGAATTTGCTTAAGATTAAAATATGCTTAAGCCCA
* *
9032257 AAATTTACTTAAGTTCAGAATTTGCTTAAGTTTAAAATATGCTTAAG
1 AAATCTACTTAAGTTCAGAATTTGCTTAAGATTAAAATATGCTTAAG
9032304 TTCAAGATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (51 bp):
AAATCTACTTAAGTTCAGAATTTGCTTAAGATTAAAATATGCTTAAGCCCA
Found at i:9032330 original size:51 final size:51
Alignment explanation
Indices: 9032206--9032339 Score: 137
Period size: 51 Copynumber: 2.6 Consensus size: 51
9032196 AGGTAGTTCG
* * * * * *
9032206 AAATCTACTTAAGTTTAGAATTTTCTTAAGATTAAAATTTGCTTAAGCCCA
1 AAATTTACTTAAGTTCAAAATTTGCTTAAGTTTAAAATATGCTTAAGCCCA
* **
9032257 AAATTTACTTAAGTTCAGAATTTGCTTAAGTTTAAAATATGCTTAAGTTCA
1 AAATTTACTTAAGTTCAAAATTTGCTTAAGTTTAAAATATGCTTAAGCCCA
* *
9032308 AGATTTGA-TTGAA-TTCAAAATTTGGTTAAGTT
1 AAATTT-ACTT-AAGTTCAAAATTTGCTTAAGTT
9032340 CATAGAAAGA
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
51 68 0.96
52 3 0.04
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.41
Consensus pattern (51 bp):
AAATTTACTTAAGTTCAAAATTTGCTTAAGTTTAAAATATGCTTAAGCCCA
Found at i:9032341 original size:17 final size:17
Alignment explanation
Indices: 9032213--9032341 Score: 118
Period size: 17 Copynumber: 7.6 Consensus size: 17
9032203 TCGAAATCTA
* * *
9032213 CTTAAGTTTAGAATTTT
1 CTTAAGTTCAAAATTTG
9032230 CTTAAGATT-AAAATTTG
1 CTTAAG-TTCAAAATTTG
** *
9032247 CTTAAGCCCAAAATTTA
1 CTTAAGTTCAAAATTTG
*
9032264 CTTAAGTTCAGAATTTG
1 CTTAAGTTCAAAATTTG
* *
9032281 CTTAAGTTTAAAATATG
1 CTTAAGTTCAAAATTTG
*
9032298 CTTAAGTTCAAGATTTG
1 CTTAAGTTCAAAATTTG
*
9032315 ATTGAA-TTCAAAATTTG
1 CTT-AAGTTCAAAATTTG
*
9032332 GTTAAGTTCA
1 CTTAAGTTCA
9032342 TAGAAAGATA
Statistics
Matches: 90, Mismatches: 18, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
16 2 0.02
17 84 0.93
18 4 0.04
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (17 bp):
CTTAAGTTCAAAATTTG
Found at i:9035310 original size:18 final size:18
Alignment explanation
Indices: 9035287--9035331 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
9035277 AATCGTGTCG
9035287 TTCATTTTCAAAACATTA
1 TTCATTTTCAAAACATTA
* * *
9035305 TTCATTTACAAATCGTTA
1 TTCATTTTCAAAACATTA
9035323 TTCAATTTT
1 TTC-ATTTT
9035332 AAATTTTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.33, C:0.16, G:0.02, T:0.49
Consensus pattern (18 bp):
TTCATTTTCAAAACATTA
Found at i:9036591 original size:16 final size:17
Alignment explanation
Indices: 9036570--9036602 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
9036560 AACCTAATTC
*
9036570 AAAATTTTAA-ACATAA
1 AAAATTATAACACATAA
9036586 AAAATTATAACACATAA
1 AAAATTATAACACATAA
9036603 TTATTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAATTATAACACATAA
Found at i:9042128 original size:20 final size:18
Alignment explanation
Indices: 9042103--9042156 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
9042093 TTATGTTAAC
*
9042103 TTCAAATCATGTCGTTCATT
1 TTCAAATCAT-T-ATTCATT
*
9042123 TTCAAAACATTATTCATT
1 TTCAAATCATTATTCATT
*
9042141 TACAAATCATTATTCA
1 TTCAAATCATTATTCA
9042157 ATTTAAAAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 20 0.67
19 1 0.03
20 9 0.30
ACGTcount: A:0.35, C:0.19, G:0.04, T:0.43
Consensus pattern (18 bp):
TTCAAATCATTATTCATT
Found at i:9042140 original size:18 final size:18
Alignment explanation
Indices: 9042117--9042169 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
9042107 AATCATGTCG
9042117 TTCATTTTCAAAACATTA
1 TTCATTTTCAAAACATTA
* *
9042135 TTCATTTACAAATCATTA
1 TTCATTTTCAAAACATTA
* *
9042153 TTCAATTTAAAAACATT
1 TTCATTTTCAAAACATT
9042170 TTTTTTATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.43
Consensus pattern (18 bp):
TTCATTTTCAAAACATTA
Found at i:9047818 original size:10 final size:10
Alignment explanation
Indices: 9047805--9047838 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
9047795 GCAAAAATAG
9047805 AAAAATTAAA
1 AAAAATTAAA
**
9047815 AAAAAAGAAA
1 AAAAATTAAA
9047825 AAAAATTAAA
1 AAAAATTAAA
9047835 AAAA
1 AAAA
9047839 TATTTTTTCG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (10 bp):
AAAAATTAAA
Found at i:9058337 original size:40 final size:40
Alignment explanation
Indices: 9058293--9058556 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
9058283 GCTCCTCGTT
* *
9058293 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
9058333 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
9058373 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
9058413 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
9058453 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
9058492 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
9058533 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
9058557 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:9068824 original size:72 final size:72
Alignment explanation
Indices: 9068737--9068895 Score: 257
Period size: 72 Copynumber: 2.2 Consensus size: 72
9068727 CGGCCTGGCC
*
9068737 ACACGGGC-TTGTGTCACACACGGGAAACACACATGGACGTGTGACCCAAGTCAGAGAGTTACAT
1 ACACGGGCGTT-TGTCACACACGGGAAACACACATGGACCTGTGACCCAAGTCAGAGAGTTACAT
9068801 GGCCTGAG
65 GGCCTGAG
* *
9068809 ACACGGGCGTTTGTCACACACGGGCAACACACATGGGCCTGTGACCCAAGTCAGAGAGTTACATG
1 ACACGGGCGTTTGTCACACACGGGAAACACACATGGACCTGTGACCCAAGTCAGAGAGTTACATG
9068874 GCCTGAG
66 GCCTGAG
* *
9068881 ACACGAGCGTGTGTC
1 ACACGGGCGTTTGTC
9068896 TCAACCGTGT
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
72 79 0.98
73 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.30, T:0.17
Consensus pattern (72 bp):
ACACGGGCGTTTGTCACACACGGGAAACACACATGGACCTGTGACCCAAGTCAGAGAGTTACATG
GCCTGAG
Found at i:9072526 original size:27 final size:27
Alignment explanation
Indices: 9072467--9072526 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 27
9072457 CTCTTTTGAA
9072467 TTAAAA-AATTCTCTTTGAGTTTTTCT
1 TTAAAAGAATTCTCTTTGAGTTTTTCT
*
9072493 TT-CAAGAATT-TCTCTTGAG-TTTTCTT
1 TTAAAAGAATTCTCT-TTGAGTTTTTC-T
9072519 TTAAAAGA
1 TTAAAAGA
9072527 GTTTTAACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
25 10 0.36
26 14 0.50
27 4 0.14
ACGTcount: A:0.28, C:0.12, G:0.10, T:0.50
Consensus pattern (27 bp):
TTAAAAGAATTCTCTTTGAGTTTTTCT
Found at i:9072725 original size:18 final size:19
Alignment explanation
Indices: 9072702--9072749 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
9072692 CTGCTTTACT
9072702 ATCTTT-TTTATTGTTCTA
1 ATCTTTATTTATTGTTCTA
*
9072720 ATCTTTGATTTATTTTTCT-
1 ATCTTT-ATTTATTGTTCTA
9072739 AT-TTTATTTAT
1 ATCTTTATTTAT
9072750 CTTAGTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 6 0.22
18 9 0.33
19 2 0.07
20 10 0.37
ACGTcount: A:0.19, C:0.08, G:0.04, T:0.69
Consensus pattern (19 bp):
ATCTTTATTTATTGTTCTA
Found at i:9073689 original size:18 final size:18
Alignment explanation
Indices: 9073638--9073689 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
9073628 TTACTTTAAC
*
9073638 AAAATTATAATTGAATTATG
1 AAAATTA-AATT-AATTAGG
* *
9073658 AAAA-TAATTTAATTGGG
1 AAAATTAAATTAATTAGG
9073675 AAAATTAAATTAATT
1 AAAATTAAATTAATT
9073690 TATTTATTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 9 0.33
18 12 0.44
19 2 0.07
20 4 0.15
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (18 bp):
AAAATTAAATTAATTAGG
Found at i:9090725 original size:22 final size:22
Alignment explanation
Indices: 9090695--9090744 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
9090685 AAAGAGGGGA
*
9090695 AAAAATGTTATTCCATCATCAC
1 AAAATTGTTATTCCATCATCAC
9090717 AAAATTGTTATTCCATCATCAC
1 AAAATTGTTATTCCATCATCAC
9090739 AAAATT
1 AAAATT
9090745 TACAGCCGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.42, C:0.20, G:0.04, T:0.34
Consensus pattern (22 bp):
AAAATTGTTATTCCATCATCAC
Found at i:9090825 original size:15 final size:16
Alignment explanation
Indices: 9090799--9090828 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9090789 AAAATCAGAT
9090799 AAAAATGCAAAAGAAA
1 AAAAATGCAAAAGAAA
9090815 AAAAATG-AAAAGAA
1 AAAAATGCAAAAGAA
9090829 TGTGTTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.77, C:0.03, G:0.13, T:0.07
Consensus pattern (16 bp):
AAAAATGCAAAAGAAA
Found at i:9092948 original size:4 final size:4
Alignment explanation
Indices: 9092939--9092965 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
9092929 TAATAGACGG
9092939 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
9092966 GGTCTAAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:9094876 original size:5 final size:6
Alignment explanation
Indices: 9094860--9094895 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
9094850 GAGAGGTAAG
**
9094860 CTTTTT CTTTTT CTTTTT CGCTTT CTTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
9094896 GGTTTGCTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (6 bp):
CTTTTT
Found at i:9097597 original size:17 final size:17
Alignment explanation
Indices: 9097572--9097609 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
9097562 CTTAAGGCCT
*
9097572 TCCTTCTTTGACATATG
1 TCCTCCTTTGACATATG
9097589 TCCTCCTTTGACATATG
1 TCCTCCTTTGACATATG
9097606 TCCT
1 TCCT
9097610 TTCTTTCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.16, C:0.29, G:0.11, T:0.45
Consensus pattern (17 bp):
TCCTCCTTTGACATATG
Found at i:9106655 original size:20 final size:20
Alignment explanation
Indices: 9106630--9106668 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
9106620 TACTTTCTTC
9106630 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
9106650 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
9106669 AACTAATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:9107020 original size:50 final size:50
Alignment explanation
Indices: 9106959--9107065 Score: 160
Period size: 50 Copynumber: 2.1 Consensus size: 50
9106949 ACATGGGAGT
* * * *
9106959 TCTCATATCGGTGCCCATGTCATGTCCTAGACATGGTCTTATGGGGGACC
1 TCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTCTTATGGGGGACC
* *
9107009 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTATGTGGGACC
1 TCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTCTTATGGGGGACC
9107059 TCTCATA
1 TCTCATA
9107066 GTCTCGATAA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.19, C:0.29, G:0.23, T:0.29
Consensus pattern (50 bp):
TCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTCTTATGGGGGACC
Found at i:9107098 original size:56 final size:50
Alignment explanation
Indices: 9106959--9107105 Score: 150
Period size: 50 Copynumber: 2.8 Consensus size: 50
9106949 ACATGGGAGT
* * * *
9106959 TCTCATATCGGTGCCCATGTCATGTCCTAGACATGGTCTTATGGGGGACC
1 TCTCATCTCGATGCCAATGTCATGTCCCAGACATGGTCTTATGGGGGACC
* * * *
9107009 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTATGTGGGACC
1 TCTCATCTCGATGCCAATGTCATGTCCCAGACATGGTCTTATGGGGGACC
* *
9107059 TCTCATAGTCTCGATAATGCCAATGTCATGCCCCCGACATGGTCTTA
1 TCTC--A-TCTCG---ATGCCAATGTCATGTCCCAGACATGGTCTTA
9107106 CATGGGATCT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
50 48 0.60
52 1 0.01
53 5 0.06
56 26 0.32
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (50 bp):
TCTCATCTCGATGCCAATGTCATGTCCCAGACATGGTCTTATGGGGGACC
Found at i:9109914 original size:13 final size:13
Alignment explanation
Indices: 9109896--9109920 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9109886 GTACCACATT
9109896 TATATCATCAAAA
1 TATATCATCAAAA
9109909 TATATCATCAAA
1 TATATCATCAAA
9109921 GCATTATTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (13 bp):
TATATCATCAAAA
Found at i:9110819 original size:35 final size:35
Alignment explanation
Indices: 9110758--9111009 Score: 326
Period size: 35 Copynumber: 7.2 Consensus size: 35
9110748 ACATCGTCAG
* ** *
9110758 TCCAACCATAACACGCTGATGTTCATAAGAGCTAA
1 TCCAACCGTAACACGCCAATGCTCATAAGAGCTAA
* * * *
9110793 TCCAACTG-AAGCATGCTAGTGCTCATAAGAGCTAA
1 TCCAACCGTAA-CACGCCAATGCTCATAAGAGCTAA
*
9110828 TCCAACCGTAACACACCAATGCTCATAAGAGCTAA
1 TCCAACCGTAACACGCCAATGCTCATAAGAGCTAA
**
9110863 TCCAACCGTAACACGGAAATGCTCATAAGAGCTAA
1 TCCAACCGTAACACGCCAATGCTCATAAGAGCTAA
* * * *
9110898 TCCAACCGAAACACACCAGTGATCATAAGAGCTAA
1 TCCAACCGTAACACGCCAATGCTCATAAGAGCTAA
*
9110933 TCCAACCGTAACACGCCAATTCTCATAAGAGCTAA
1 TCCAACCGTAACACGCCAATGCTCATAAGAGCTAA
* *
9110968 TCCAACCGAAACACGCCAATGCTCGTAAGAGCTAA
1 TCCAACCGTAACACGCCAATGCTCATAAGAGCTAA
9111003 TCCAACC
1 TCCAACC
9111010 AAAACACGTC
Statistics
Matches: 187, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
34 2 0.01
35 183 0.98
36 2 0.01
ACGTcount: A:0.38, C:0.29, G:0.15, T:0.18
Consensus pattern (35 bp):
TCCAACCGTAACACGCCAATGCTCATAAGAGCTAA
Found at i:9127947 original size:11 final size:11
Alignment explanation
Indices: 9127911--9128090 Score: 84
Period size: 11 Copynumber: 17.1 Consensus size: 11
9127901 ATATTTTTTA
9127911 TTTTAAAATATT
1 TTTTAAAAT-TT
* **
9127923 TTTT-ACATAC
1 TTTTAAAATTT
9127933 TTTTAAAATTT
1 TTTTAAAATTT
9127944 TTTT-AAA---
1 TTTTAAAATTT
*
9127951 TTTTAAAATAT
1 TTTTAAAATTT
9127962 TTTTAAAATACTT
1 TTTTAAAAT--TT
**
9127975 TTTTTTAATTT
1 TTTTAAAATTT
9127986 TTTT-AAA---
1 TTTTAAAATTT
*
9127993 TTTTAAAATAT
1 TTTTAAAATTT
9128004 TTTTAAAATACTT
1 TTTTAAAAT--TT
*
9128017 TTTT-TAATTT
1 TTTTAAAATTT
9128027 TTTT-AAA---
1 TTTTAAAATTT
*
9128034 TTTTAAAATAT
1 TTTTAAAATTT
*
9128045 TTTTAAAATAT
1 TTTTAAAATTT
9128056 TTTTAAAATACTT
1 TTTTAAAAT--TT
*
9128069 TTTT-TAATTT
1 TTTTAAAATTT
*
9128079 TTTAAAAATTT
1 TTTTAAAATTT
9128090 T
1 T
9128091 AAAATAAAAA
Statistics
Matches: 131, Mismatches: 17, Indels: 41
0.69 0.09 0.22
Matches are distributed among these distances:
7 12 0.09
8 9 0.07
10 22 0.17
11 60 0.46
12 10 0.08
13 18 0.14
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:9128019 original size:41 final size:41
Alignment explanation
Indices: 9127910--9128059 Score: 241
Period size: 41 Copynumber: 3.7 Consensus size: 41
9127900 TATATTTTTT
* * **
9127910 ATTTTAAAATATTTTTTACATAC-TTTTAAAATTTTTTTAA
1 ATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTTAA
9127950 ATTTTAAAATATTTTTAAAATACTTTTTTTTAATTTTTTTAA
1 ATTTTAAAATATTTTTAAAATAC-TTTTTTTAATTTTTTTAA
9127992 ATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTTAA
1 ATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTTAA
9128033 ATTTTAAAATATTTTTAAAATA-TTTTT
1 ATTTTAAAATATTTTTAAAATACTTTTT
9128060 AAAATACTTT
Statistics
Matches: 104, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
40 26 0.25
41 40 0.38
42 38 0.37
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (41 bp):
ATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTTAA
Found at i:9128071 original size:42 final size:41
Alignment explanation
Indices: 9127910--9128096 Score: 238
Period size: 42 Copynumber: 4.5 Consensus size: 41
9127900 TATATTTTTT
* *
9127910 ATTTTAAAATATTTTTTACATAC-TTTTAAAATTTTTTTAA
1 ATTTTAAAATATTTTTAAAATACTTTTTAAAATTTTTTTAA
**
9127950 ATTTTAAAATATTTTTAAAATACTTTTTTTTAATTTTTTTAA
1 ATTTTAAAATATTTTTAAAATAC-TTTTTAAAATTTTTTTAA
**
9127992 ATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTTAA
1 ATTTTAAAATATTTTTAAAATACTTTTTAAAATTTTTTTAA
9128033 ATTTTAAAATATTTTTAAAATA-TTTTTAAAATACTTTTTTTAA
1 ATTTTAAAATATTTTTAAAATACTTTTT-AAA-A-TTTTTTTAA
*
9128076 TTTTTTAAAA-A-TTTTAAAATA
1 -ATTTTAAAATATTTTTAAAATA
9128097 AAAATGGGCC
Statistics
Matches: 134, Mismatches: 7, Indels: 10
0.89 0.05 0.07
Matches are distributed among these distances:
40 26 0.19
41 41 0.31
42 49 0.37
43 10 0.07
44 8 0.06
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (41 bp):
ATTTTAAAATATTTTTAAAATACTTTTTAAAATTTTTTTAA
Found at i:9128683 original size:26 final size:26
Alignment explanation
Indices: 9128625--9128718 Score: 98
Period size: 26 Copynumber: 3.5 Consensus size: 26
9128615 ATAGTACCTA
* *
9128625 CTAAATAAAACACCGACAACTAATGCCTG
1 CTAAAT-ATACACCGA-AAC-AAAGCCTG
* ** *
9128654 CTAAATATACACTGGCACAAAGCCTA
1 CTAAATATACACCGAAACAAAGCCTG
*
9128680 CTAAATATACACCGAAACAAAGCTTG
1 CTAAATATACACCGAAACAAAGCCTG
9128706 CTAAATATACACC
1 CTAAATATACACC
9128719 AACATAAAGC
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
26 40 0.74
27 2 0.04
28 6 0.11
29 6 0.11
ACGTcount: A:0.45, C:0.27, G:0.10, T:0.19
Consensus pattern (26 bp):
CTAAATATACACCGAAACAAAGCCTG
Found at i:9128727 original size:26 final size:26
Alignment explanation
Indices: 9128649--9128730 Score: 94
Period size: 26 Copynumber: 3.2 Consensus size: 26
9128639 GACAACTAAT
***
9128649 GCCTGCTAAATATACACTGGCACAAA
1 GCCTGCTAAATATACACCAACACAAA
*
9128675 GCCTACTAAATATACACCGAA-ACAAA
1 GCCTGCTAAATATACACC-AACACAAA
* *
9128701 GCTTGCTAAATATACACCAACATAAA
1 GCCTGCTAAATATACACCAACACAAA
9128727 GCCT
1 GCCT
9128731 ATTACGCCCT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
25 2 0.04
26 44 0.96
ACGTcount: A:0.43, C:0.27, G:0.11, T:0.20
Consensus pattern (26 bp):
GCCTGCTAAATATACACCAACACAAA
Found at i:9128728 original size:52 final size:55
Alignment explanation
Indices: 9128621--9128731 Score: 138
Period size: 52 Copynumber: 2.1 Consensus size: 55
9128611 GTACATAGTA
* ***
9128621 CCTACTAAATAAAACACCGACAACTAATGCCTGCTAAATATACACTGGCACAAAG
1 CCTACTAAATAAAACACCGACAACTAAAGCCTGCTAAATATACACCAACACAAAG
* * *
9128676 CCTACTAAAT-ATACACCGA-AAC-AAAGCTTGCTAAATATACACCAACATAAAG
1 CCTACTAAATAAAACACCGACAACTAAAGCCTGCTAAATATACACCAACACAAAG
9128728 CCTA
1 CCTA
9128732 TTACGCCCTA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
52 28 0.57
53 3 0.06
54 8 0.16
55 10 0.20
ACGTcount: A:0.45, C:0.27, G:0.09, T:0.19
Consensus pattern (55 bp):
CCTACTAAATAAAACACCGACAACTAAAGCCTGCTAAATATACACCAACACAAAG
Found at i:9136172 original size:26 final size:26
Alignment explanation
Indices: 9136119--9136199 Score: 99
Period size: 26 Copynumber: 3.1 Consensus size: 26
9136109 AAACTAATGG
* *
9136119 CTGCTAAATTATACACCAACACAAAGC
1 CTGCTAAA-TATACACTAGCACAAAGC
*
9136146 CTGCTAAATATGCACTAGCACAAAGC
1 CTGCTAAATATACACTAGCACAAAGC
* * *
9136172 CTGCTAGATATACACTGGCATAAAGC
1 CTGCTAAATATACACTAGCACAAAGC
9136198 CT
1 CT
9136200 ACTACACCCT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 39 0.83
27 8 0.17
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.21
Consensus pattern (26 bp):
CTGCTAAATATACACTAGCACAAAGC
Found at i:9147327 original size:16 final size:16
Alignment explanation
Indices: 9147306--9147337 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9147296 GTTTTGTTGC
*
9147306 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
9147322 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
9147338 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:9150503 original size:20 final size:21
Alignment explanation
Indices: 9150464--9150510 Score: 78
Period size: 20 Copynumber: 2.2 Consensus size: 21
9150454 AATGGAACAA
9150464 TACAACACATGTGATTTCTTAT
1 TACAACACATGT-ATTTCTTAT
9150486 TACAACACATGT-TTTCTTAT
1 TACAACACATGTATTTCTTAT
9150506 TACAA
1 TACAA
9150511 AACTTCTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 13 0.52
22 12 0.48
ACGTcount: A:0.34, C:0.19, G:0.06, T:0.40
Consensus pattern (21 bp):
TACAACACATGTATTTCTTAT
Found at i:9150523 original size:20 final size:20
Alignment explanation
Indices: 9150480--9150523 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
9150470 ACATGTGATT
* * *
9150480 TCTTATTACAACACATGTTT
1 TCTTATTACAAAACATCTTA
*
9150500 TCTTATTACAAAACTTCTTA
1 TCTTATTACAAAACATCTTA
9150520 TCTT
1 TCTT
9150524 TAATGGATCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.02, T:0.48
Consensus pattern (20 bp):
TCTTATTACAAAACATCTTA
Found at i:9150980 original size:26 final size:26
Alignment explanation
Indices: 9150951--9151004 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
9150941 CCTAAAGTTT
* *
9150951 TTTTGACGATTTTACCCTTGGTAAAA
1 TTTTGACAATTTTACCCTTGATAAAA
*
9150977 TTTTGACAATTTTTCCCTTGATAAAA
1 TTTTGACAATTTTACCCTTGATAAAA
9151003 TT
1 TT
9151005 CTGAGAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.11, T:0.46
Consensus pattern (26 bp):
TTTTGACAATTTTACCCTTGATAAAA
Found at i:9151292 original size:40 final size:42
Alignment explanation
Indices: 9151248--9151338 Score: 132
Period size: 44 Copynumber: 2.2 Consensus size: 42
9151238 AAACCATAAT
9151248 CATTCAT-GA-ATGTTTCCCATTTCACTTTTCCTATTCATTC
1 CATTCATCGATATGTTTCCCATTTCACTTTTCCTATTCATTC
* *
9151288 CATTCATTTCTATTTGTTTCCCATTTCACTTTTCCTATTCATTC
1 CATTCA--TCGATATGTTTCCCATTTCACTTTTCCTATTCATTC
9151332 CATTCAT
1 CATTCAT
9151339 TTCTATTCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
40 6 0.13
42 2 0.04
43 1 0.02
44 36 0.80
ACGTcount: A:0.19, C:0.27, G:0.03, T:0.51
Consensus pattern (42 bp):
CATTCATCGATATGTTTCCCATTTCACTTTTCCTATTCATTC
Found at i:9151307 original size:44 final size:44
Alignment explanation
Indices: 9151258--9151345 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
9151248 CATTCATGAA
9151258 TGTTTCCCATTTCACTTTTCCTATTCATTCCATTCATTTCTATT
1 TGTTTCCCATTTCACTTTTCCTATTCATTCCATTCATTTCTATT
9151302 TGTTTCCCATTTCACTTTTCCTATTCATTCCATTCATTTCTATT
1 TGTTTCCCATTTCACTTTTCCTATTCATTCCATTCATTTCTATT
9151346 CAAACACACA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.16, C:0.27, G:0.02, T:0.55
Consensus pattern (44 bp):
TGTTTCCCATTTCACTTTTCCTATTCATTCCATTCATTTCTATT
Found at i:9155762 original size:65 final size:65
Alignment explanation
Indices: 9155690--9155959 Score: 267
Period size: 65 Copynumber: 4.2 Consensus size: 65
9155680 CTTTAACTCT
** ***
9155690 TTTAAAGAAGTGTAATATCTAAGTTTGCTTTCAAGAAACATATTACCTTAAAAAGGTAGTTCCAC
1 TTTAAAGAAGTGTAATATCTAAGTTCACTTTCAAGAAACATATTACCTTAAAAAGGTAAAGCCAC
* **
9155755 TTTAAAGAAGTGTAATATCTAAGTTCACTTTCAAGATATGTATTACCTTAAAAAGGTAAAGCCAC
1 TTTAAAGAAGTGTAATATCTAAGTTCACTTTCAAGAAACATATTACCTTAAAAAGGTAAAGCCAC
** **** * *
9155820 TTTAAAGAAGTGTGTTATCTAAGTTCACTTTCAAGAAGTGCATTA-CTT-TAAAGGTAAAACCAC
1 TTTAAAGAAGTGTAATATCTAAGTTCACTTTCAAGAAACATATTACCTTAAAAAGGTAAAGCCAC
*** * * *** * * *
9155883 TTTAAACTGGTGTTATATCTAATTTCACTTTCAAGAAATGCATTACCTTAAAGAGATACAA-CCG
1 TTTAAAGAAGTGTAATATCTAAGTTCACTTTCAAGAAACATATTACCTTAAAAAGGTA-AAGCCA
9155947 C
65 C
9155948 TTTAAAGAAGTG
1 TTTAAAGAAGTG
9155960 GGCTATCTAA
Statistics
Matches: 173, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
63 51 0.29
64 6 0.03
65 114 0.66
66 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (65 bp):
TTTAAAGAAGTGTAATATCTAAGTTCACTTTCAAGAAACATATTACCTTAAAAAGGTAAAGCCAC
Found at i:9156573 original size:18 final size:18
Alignment explanation
Indices: 9156550--9156587 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
9156540 ATGTTCGTGT
*
9156550 GGCTCA-ACCGTGTGACAA
1 GGCTCAGACCATGTGA-AA
9156568 GGCTCAGACCATGTGAAA
1 GGCTCAGACCATGTGAAA
9156586 GG
1 GG
9156588 AGACACACGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.29, C:0.24, G:0.32, T:0.16
Consensus pattern (18 bp):
GGCTCAGACCATGTGAAA
Found at i:9170970 original size:359 final size:359
Alignment explanation
Indices: 9170306--9171385 Score: 2124
Period size: 359 Copynumber: 3.0 Consensus size: 359
9170296 AGACTTTGCA
* *
9170306 GTTTTTGATTCTTTTGGTGTAAGAACTTCAACAGTTGATTGATTCTTCTCAATGGGATTATCTTT
1 GTTTCTGATTCTTTTGGTGTAAGAACTTCAACAGCTGATTGATTCTTCTCAATGGGATTATCTTT
*
9170371 GACATCAATCAATCGGGGTTCTAGAATTTTACCACTTCGCAATGCCACTGCCTTGATATGTTCTT
66 GACATTAATCAATCGGGGTTCTAGAATTTTACCACTTCGCAATGCCACTGCCTTGATATGTTCTT
*
9170436 TACCCAAATTTCTTAGACTCCCAGTATCGCTCGGCAAGGTTCCTTGCAGCCTATTACGAAGCTCC
131 TACCCAAATTTCTTAGACTCTCAGTATCGCTCGGCAAGGTTCCTTGCAGCCTATTACGAAGCTCC
9170501 GTAGCCAACTGACCCATTTGGTTTTCCAAATTTTTCAGTGTTGCTGCTTGGCTTTGGATCAAAAC
196 GTAGCCAACTGACCCATTTGGTTTTCCAAATTTTTCAGTGTTGCTGCTTGGCTTTGGATCAAAAC
9170566 GTCATTCTTTTCCATGTACGCTTTCAACAAGTTCTCCAAACTGTTTGATGCCTTAGCTTGAGGTG
261 GTCATTCTTTTCCATGTACGCTTTCAACAAGTTCTCCAAACTGTTTGATGCCTTAGCTTGAGGTG
9170631 GTTTTAGAGCTTGCTGATTAAACCCCTGAGATTG
326 GTTTTAGAGCTTGCTGATTAAACCCCTGAGATTG
9170665 GTTTCTGATTCTTTTGGTGTAAGAACTTCAACAGCTGATTGATTCTTCTCAATGGGATTATCTTT
1 GTTTCTGATTCTTTTGGTGTAAGAACTTCAACAGCTGATTGATTCTTCTCAATGGGATTATCTTT
9170730 GACATTAATCAATCGGGGTTCTAGAATTTTACCACTTCGCAATGCCACTGCCTTGATATGTTCTT
66 GACATTAATCAATCGGGGTTCTAGAATTTTACCACTTCGCAATGCCACTGCCTTGATATGTTCTT
9170795 TACCCAAATTTCTTAGACTCTCAGTATCGCTCGGCAAGGTTCCTTGCAGCCTATTACGAAGCTCC
131 TACCCAAATTTCTTAGACTCTCAGTATCGCTCGGCAAGGTTCCTTGCAGCCTATTACGAAGCTCC
9170860 GTAGCCAACTGACCCATTTGGTTTTCCAAATTTTTCAGTGTTGCTGCTTGGCTTTGGATCAAAAC
196 GTAGCCAACTGACCCATTTGGTTTTCCAAATTTTTCAGTGTTGCTGCTTGGCTTTGGATCAAAAC
9170925 GTCATTCTTTTCCATGTACGCTTTCAACAAGTTCTCCAAACTGTTTGATGCCTTAGCTTGAGGTG
261 GTCATTCTTTTCCATGTACGCTTTCAACAAGTTCTCCAAACTGTTTGATGCCTTAGCTTGAGGTG
9170990 GTTTTAGAGCTTGCTGATTAAACCCCTGAGATTG
326 GTTTTAGAGCTTGCTGATTAAACCCCTGAGATTG
9171024 GTTTCTGATTCTTTTGGTGTAAGAACTTCAACAGCTGATTGATTCTTCTCAATGGGATTATCTTT
1 GTTTCTGATTCTTTTGGTGTAAGAACTTCAACAGCTGATTGATTCTTCTCAATGGGATTATCTTT
9171089 GACATTAATCAATCGGGGTTCTAGAATTTTACCACTTCGCAATGCCACTGCCTTGATATGTTCTT
66 GACATTAATCAATCGGGGTTCTAGAATTTTACCACTTCGCAATGCCACTGCCTTGATATGTTCTT
9171154 TACCCAAATTTCTTAGACTCTCAGTATCGCTCGGCAAGGTTCCTTGCAGCCTATTACGAAGCTCC
131 TACCCAAATTTCTTAGACTCTCAGTATCGCTCGGCAAGGTTCCTTGCAGCCTATTACGAAGCTCC
9171219 GTAGCCAACTGACCCATTTGGTTTTCCAAATTTTTCAGTGTTGCTGCTTGGCTTTGGATCAAAAC
196 GTAGCCAACTGACCCATTTGGTTTTCCAAATTTTTCAGTGTTGCTGCTTGGCTTTGGATCAAAAC
9171284 GTCATTCTTTTCCATGTACGCTTTCAACAAGTTCTCCAAACTGTTTGATGCCTTAGCTTGAGGTG
261 GTCATTCTTTTCCATGTACGCTTTCAACAAGTTCTCCAAACTGTTTGATGCCTTAGCTTGAGGTG
9171349 GTTTTAGAGCTTGCTGATTAAACCCCTGAGATTG
326 GTTTTAGAGCTTGCTGATTAAACCCCTGAGATTG
9171383 GTT
1 GTT
9171386 AGGTCTTTGC
Statistics
Matches: 717, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
359 717 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (359 bp):
GTTTCTGATTCTTTTGGTGTAAGAACTTCAACAGCTGATTGATTCTTCTCAATGGGATTATCTTT
GACATTAATCAATCGGGGTTCTAGAATTTTACCACTTCGCAATGCCACTGCCTTGATATGTTCTT
TACCCAAATTTCTTAGACTCTCAGTATCGCTCGGCAAGGTTCCTTGCAGCCTATTACGAAGCTCC
GTAGCCAACTGACCCATTTGGTTTTCCAAATTTTTCAGTGTTGCTGCTTGGCTTTGGATCAAAAC
GTCATTCTTTTCCATGTACGCTTTCAACAAGTTCTCCAAACTGTTTGATGCCTTAGCTTGAGGTG
GTTTTAGAGCTTGCTGATTAAACCCCTGAGATTG
Found at i:9186670 original size:16 final size:17
Alignment explanation
Indices: 9186649--9186683 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
9186639 CACGCTTATT
9186649 TTCTCAATTTTTT-TTC
1 TTCTCAATTTTTTCTTC
9186665 TTCTCAATTTTTTCTTC
1 TTCTCAATTTTTTCTTC
9186682 TT
1 TT
9186684 TTGCTGGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.11, C:0.20, G:0.00, T:0.69
Consensus pattern (17 bp):
TTCTCAATTTTTTCTTC
Found at i:9239375 original size:20 final size:20
Alignment explanation
Indices: 9239350--9239394 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
9239340 TCGCTTAAAG
9239350 TTTTATTTATA-AGATTATTA
1 TTTTATTTATAGA-ATTATTA
*
9239370 TTTTATTTATTGAATTATTA
1 TTTTATTTATAGAATTATTA
9239390 TTTTA
1 TTTTA
9239395 ATAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.64
Consensus pattern (20 bp):
TTTTATTTATAGAATTATTA
Found at i:9239405 original size:20 final size:20
Alignment explanation
Indices: 9239358--9239405 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
9239348 AGTTTTATTT
* *
9239358 ATAAGATTATTATTTTATTTA
1 ATAA-ATTATTATTTTAATAA
* *
9239379 TTGAATTATTATTTTAATAA
1 ATAAATTATTATTTTAATAA
9239399 ATAAATT
1 ATAAATT
9239406 TCATATTAGA
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (20 bp):
ATAAATTATTATTTTAATAA
Found at i:9244268 original size:17 final size:19
Alignment explanation
Indices: 9244246--9244330 Score: 79
Period size: 18 Copynumber: 4.6 Consensus size: 19
9244236 TTTTTTCAGC
9244246 TATTTTAT-TTATT-TAAT
1 TATTTTATATTATTATAAT
9244263 TATTTT-TATTATTATAAT
1 TATTTTATATTATTATAAT
* ** *
9244281 TATGTTATACCATTAT-CT
1 TATTTTATATTATTATAAT
*
9244299 TATTTTATTATTATTATTAT
1 TATTTTA-TATTATTATAAT
9244319 TATTTTTATATT
1 TA-TTTTATATT
9244331 CATACGCATG
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
16 1 0.02
17 11 0.20
18 16 0.30
19 14 0.26
20 7 0.13
21 5 0.09
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (19 bp):
TATTTTATATTATTATAAT
Found at i:9245102 original size:13 final size:14
Alignment explanation
Indices: 9245069--9245105 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
9245059 TTTTTTATGA
9245069 ATATTAGTTTCGTTT
1 ATATTA-TTTCGTTT
9245084 AT-TTATTT-GTTT
1 ATATTATTTCGTTT
9245096 ATATTATTTC
1 ATATTATTTC
9245106 TATGTCATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
12 6 0.30
13 9 0.45
14 3 0.15
15 2 0.10
ACGTcount: A:0.22, C:0.05, G:0.08, T:0.65
Consensus pattern (14 bp):
ATATTATTTCGTTT
Found at i:9245132 original size:15 final size:15
Alignment explanation
Indices: 9245112--9245143 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
9245102 TTTCTATGTC
9245112 ATTGTTGTATTTATT
1 ATTGTTGTATTTATT
*
9245127 ATTGTTGTATTTGTT
1 ATTGTTGTATTTATT
9245142 AT
1 AT
9245144 CGCGACATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.16, T:0.66
Consensus pattern (15 bp):
ATTGTTGTATTTATT
Found at i:9251754 original size:404 final size:402
Alignment explanation
Indices: 9251005--9251810 Score: 1531
Period size: 404 Copynumber: 2.0 Consensus size: 402
9250995 GGAATCCATA
9251005 CATATATGGTATGACCCCTAATTATCTCTGGTCAATTTATAGTGAATTTCCAAAGTCGGAACAGG
1 CATATATGGTATGACCCCTAATTATCTCTGGTCAATTTATAGTGAATTTCCAAAGTCGGAACAGG
9251070 GAATCCAGAAACTGTTCTGGCCCTGTTCCACAAGAACCCGAATATCTCTTACTGTACTGTTCCTA
66 GAATCCAGAAACTGTTCTGGCCCTGTTCCACAAGAACCCGAATATCTCTTACTGTACTGTTCCTA
9251135 TGATTGTTTCGTTACTTCCATATGAAAGTAGATTCATCAAGGTTCGATTACATAATTTATTCACT
131 TGATTGTTTCGTTACTTCCATATGAAAGTAGATTCATCAAGGTTCGATTACATAATTTATTCACT
9251200 ATTTAATTCCACTCCTACGAATTCTTGTGATTTTTCCAATCCACACCACTGCTGCTATCAGCTTC
196 ATTTAATTCCACTCCTACGAATTCTTGTGATTTTTCCAATCCACACCACTGCTGCTATCAGCTTC
9251265 TGTTTTCAAAGTAAACCTTACCTAATTTGGGGTTTCATGGACCAACTAGGGCCTTGTCATACATA
261 TGTTTTCAAAGTAAACCTTACCTAATTTGGGGTTTCATGGACCAACTAGGGCCTTGTCATACATA
*
9251330 TGCCCACATATGATCATACTTAGCCATTCCAATGGCTGATCATTAGCCCAACACTTCCATTCCAA
326 AGCCCACATATGATCATACTTAGCCATTCCAATGGCTGATCATTAGCCCAACACTTCCATTCC-A
9251395 ACCATAGTCACATC
390 A-CATAGTCACATC
9251409 CATATATGGTATGACCCCTAATTATCTCTGGTCAATTTATAGTGAATTTCCAAAGTCGGAACAGG
1 CATATATGGTATGACCCCTAATTATCTCTGGTCAATTTATAGTGAATTTCCAAAGTCGGAACAGG
9251474 GAATCCAGAAACTGTTCTGGCCCTGTTCCACAAGAACCCGAATATCTCTTACTGTACTGTTCCTA
66 GAATCCAGAAACTGTTCTGGCCCTGTTCCACAAGAACCCGAATATCTCTTACTGTACTGTTCCTA
9251539 TGATTGTTTCGTTACTTCCATATGAAAGTAGATTCATCAAGGTTCGATTACATAATTTATTCACT
131 TGATTGTTTCGTTACTTCCATATGAAAGTAGATTCATCAAGGTTCGATTACATAATTTATTCACT
9251604 ATTTAATTCCACTCCTACGAATTCTTGTGATTTTTCCAATCCACACCACTGCTGCTATCAGCTTC
196 ATTTAATTCCACTCCTACGAATTCTTGTGATTTTTCCAATCCACACCACTGCTGCTATCAGCTTC
*
9251669 TGTTTTCAAAGTGAACCTTACCTAATTTGGGGTTTCATGGACCAACTAGGGCCTTGTCATACATA
261 TGTTTTCAAAGTAAACCTTACCTAATTTGGGGTTTCATGGACCAACTAGGGCCTTGTCATACATA
* * * *
9251734 AGCCCACATATGATCATACTTAGCCATTCTAGTGGCTGATCATTTGCTCAACACTTCCATTCCAA
326 AGCCCACATATGATCATACTTAGCCATTCCAATGGCTGATCATTAGCCCAACACTTCCATTCCAA
*
9251799 CATAGTTACATC
391 CATAGTCACATC
9251811 ATGAAACCAT
Statistics
Matches: 395, Mismatches: 7, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
402 11 0.03
403 2 0.01
404 382 0.97
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (402 bp):
CATATATGGTATGACCCCTAATTATCTCTGGTCAATTTATAGTGAATTTCCAAAGTCGGAACAGG
GAATCCAGAAACTGTTCTGGCCCTGTTCCACAAGAACCCGAATATCTCTTACTGTACTGTTCCTA
TGATTGTTTCGTTACTTCCATATGAAAGTAGATTCATCAAGGTTCGATTACATAATTTATTCACT
ATTTAATTCCACTCCTACGAATTCTTGTGATTTTTCCAATCCACACCACTGCTGCTATCAGCTTC
TGTTTTCAAAGTAAACCTTACCTAATTTGGGGTTTCATGGACCAACTAGGGCCTTGTCATACATA
AGCCCACATATGATCATACTTAGCCATTCCAATGGCTGATCATTAGCCCAACACTTCCATTCCAA
CATAGTCACATC
Found at i:9252524 original size:40 final size:39
Alignment explanation
Indices: 9252426--9252688 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
9252416 TCCTCGTTCA
* * * *
9252426 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
9252465 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
9252504 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
9252544 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
9252584 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
9252624 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
9252665 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
9252689 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:9252648 original size:120 final size:119
Alignment explanation
Indices: 9252426--9252688 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
9252416 TCCTCGTTCA
* * *
9252426 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
9252491 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
9252544 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
9252609 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
9252665 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
9252689 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:9252697 original size:41 final size:41
Alignment explanation
Indices: 9252620--9252697 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
9252610 TTTGTATCTC
* * *
9252620 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
9252661 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
9252698 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:9260474 original size:40 final size:39
Alignment explanation
Indices: 9260376--9260638 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
9260366 TCCTCGTTCA
* * * *
9260376 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
9260415 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
9260454 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
9260494 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
9260534 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
9260574 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
9260615 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
9260639 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:9260598 original size:120 final size:119
Alignment explanation
Indices: 9260376--9260638 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
9260366 TCCTCGTTCA
* * *
9260376 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
9260441 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
9260494 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
9260559 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
9260615 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
9260639 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:9260647 original size:41 final size:41
Alignment explanation
Indices: 9260570--9260647 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
9260560 TTTGTATCTC
* * *
9260570 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
9260611 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
9260648 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:9263024 original size:14 final size:15
Alignment explanation
Indices: 9262998--9263030 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
9262988 TCCCAAGCTG
*
9262998 GGAAGGACCTTATGT
1 GGAAGGACCTTATCT
9263013 GGAAGG-CCTTATCT
1 GGAAGGACCTTATCT
9263027 GGAA
1 GGAA
9263031 AAGCATCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.24
Consensus pattern (15 bp):
GGAAGGACCTTATCT
Found at i:9264812 original size:100 final size:100
Alignment explanation
Indices: 9264705--9265062 Score: 475
Period size: 100 Copynumber: 3.6 Consensus size: 100
9264695 ACTACGACGA
* *
9264705 CGAATCTTACTCCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCC
1 CGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCC
9264770 CAACATTGCAATTAAAAAGATTGAAGCCGCAATGG
66 CAACATTGCAATTAAAAAGATTGAAGCCGCAATGG
* ** * * *
9264805 CAAATCTTACTTCATTGGC-GATGTAATGGAACAGATTGAAGCTACGATGACGAATCTTGTTTCC
1 CGAATCTTACTTCCCTGGCAG-TGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCC
* * *
9264869 CCAAAATTGCAATTAAAAATATTGAAGCCGCAACGG
65 CCAACATTGCAATTAAAAAGATTGAAGCCGCAATGG
* * * * *
9264905 CGAATATTACTTCCTTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGTGAATCTTGTTTTCC
1 CGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCC
* *
9264970 CAACATTGCAATTAAAAAGATCGAAGCCACAATGG
66 CAACATTGCAATTAAAAAGATTGAAGCCGCAATGG
* * * ** * *
9265005 CGAATCTCATTTCCCTGGCATTGTAGCAGAGCAGATTGAAGCCACGACGGCGAATCTT
1 CGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTT
9265063 ATCTCCCTAG
Statistics
Matches: 221, Mismatches: 35, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
99 1 0.00
100 219 0.99
101 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (100 bp):
CGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCC
CAACATTGCAATTAAAAAGATTGAAGCCGCAATGG
Found at i:9265389 original size:45 final size:44
Alignment explanation
Indices: 9265270--9265429 Score: 127
Period size: 44 Copynumber: 3.6 Consensus size: 44
9265260 AAGATATCAG
*
9265270 GTCTTATCTCCCTGAGGTTGCAGTGGAGC-GACTAAGTAAGCAA
1 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAA
** *
9265313 GTCTTATC-CTTTTGAAGTTGCAGT-GAGGCAGACTGAAGGT-GGCGAA
1 GTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AA-GTAAGC-AA
* * *
9265359 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATCCAA-TAA
1 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGT--AAGCAA
* *
9265403 -TCCTATCTCCCTGAAGTTACAGTGGAG
1 GTCTTATCTCCCTGAAGTTGCAGTGGAG
9265430 TGGATTAAAT
Statistics
Matches: 94, Mismatches: 12, Indels: 21
0.74 0.09 0.17
Matches are distributed among these distances:
42 3 0.03
43 22 0.23
44 33 0.35
45 29 0.31
46 7 0.07
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (44 bp):
GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAA
Found at i:9265426 original size:44 final size:44
Alignment explanation
Indices: 9265357--9265442 Score: 136
Period size: 44 Copynumber: 2.0 Consensus size: 44
9265347 GAAGGTGGCG
* *
9265357 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATCCAAT
1 AATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAATCCAAT
**
9265401 AATCCTATCTCCCTGAAGTTACAGTGGAGTGGATTAAATCCA
1 AATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAATCCA
9265443 CAGATCTTAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (44 bp):
AATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAATCCAAT
Found at i:9267044 original size:17 final size:19
Alignment explanation
Indices: 9267022--9267065 Score: 58
Period size: 17 Copynumber: 2.5 Consensus size: 19
9267012 TTTTTTCAGC
9267022 TATTTTAT-TTATT-TAAT
1 TATTTTATATTATTATAAT
9267039 TATTTT-TATTATTATAAT
1 TATTTTATATTATTATAAT
*
9267057 TATGTTATA
1 TATTTTATA
9267066 CCATTATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 1 0.04
17 11 0.48
18 9 0.39
19 2 0.09
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
TATTTTATATTATTATAAT
Found at i:9267047 original size:18 final size:18
Alignment explanation
Indices: 9267024--9267059 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
9267014 TTTTCAGCTA
9267024 TTTTATTTATT-TAATTAT
1 TTTTA-TTATTATAATTAT
9267042 TTTTATTATTATAATTAT
1 TTTTATTATTATAATTAT
9267060 GTTATACCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTATTATTATAATTAT
Found at i:9267100 original size:18 final size:17
Alignment explanation
Indices: 9267072--9267106 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9267062 TATACCATTA
*
9267072 TTTTATTTTATTTTTAT
1 TTTTATTTTATCTTTAT
9267089 TTTTATTATTATCTTTAT
1 TTTTATT-TTATCTTTAT
9267107 ATTCATACGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTATTTTATCTTTAT
Found at i:9267709 original size:31 final size:28
Alignment explanation
Indices: 9267636--9267710 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 28
9267626 TTTACATCAG
*
9267636 GTTACATTTTAGTCACTTATGTTTGACAT
1 GTTACATTTTAGTCACTTACGTTT-ACAT
*
9267665 GTTACGTTTTAGTCACTTACG-TTATCAT
1 GTTACATTTTAGTCACTTACGTTTA-CAT
9267693 GTTGTAACATTTTAGTCA
1 G-T-T-ACATTTTAGTCA
9267711 TTGAGCCATT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
27 1 0.03
28 6 0.15
29 20 0.51
30 1 0.03
31 11 0.28
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.47
Consensus pattern (28 bp):
GTTACATTTTAGTCACTTACGTTTACAT
Found at i:9272475 original size:30 final size:30
Alignment explanation
Indices: 9272455--9272545 Score: 182
Period size: 30 Copynumber: 3.0 Consensus size: 30
9272445 TGTCTTCGTG
9272455 AATTCCTTCTTCTAGATCCATCATCCCTGT
1 AATTCCTTCTTCTAGATCCATCATCCCTGT
9272485 AATTCCTTCTTCTAGATCCATCATCCCTGT
1 AATTCCTTCTTCTAGATCCATCATCCCTGT
9272515 AATTCCTTCTTCTAGATCCATCATCCCTGT
1 AATTCCTTCTTCTAGATCCATCATCCCTGT
9272545 A
1 A
9272546 CGAGTTAACT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.21, C:0.33, G:0.07, T:0.40
Consensus pattern (30 bp):
AATTCCTTCTTCTAGATCCATCATCCCTGT
Found at i:9285620 original size:23 final size:23
Alignment explanation
Indices: 9285594--9285715 Score: 183
Period size: 23 Copynumber: 5.3 Consensus size: 23
9285584 ATAAGTGCCA
9285594 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
9285617 CACTGATATGTAACCGCAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
9285640 CACTGAAATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
9285663 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
9285686 CACTGA-ATTGTAGCCGAAGCTAC
1 CACTGATA-TGTAGCCGAAGCTAC
9285709 CACTGAT
1 CACTGAT
9285716 CAATAACACT
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
22 1 0.01
23 86 0.99
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:9288899 original size:57 final size:57
Alignment explanation
Indices: 9288837--9289071 Score: 251
Period size: 57 Copynumber: 4.1 Consensus size: 57
9288827 TTCGGAGTTC
* *
9288837 TGCCACAAACGTCGTCCTTAAACAGGTTCACCACAAAGGTTTGCCTTTCCAGAATTT
1 TGCCACAAACGTCGTCCTTTAACAGGTTCGCCACAAAGGTTTGCCTTTCCAGAATTT
* * * * * * *
9288894 TGCCACAAA-GGCTATCCTTTTATAGGTTCGCCACAAAGGTTTTCCTTTTCAGAGTTT
1 TGCCACAAACGTC-GTCCTTTAACAGGTTCGCCACAAAGGTTTGCCTTTCCAGAATTT
* * * *
9288951 TACCACAAACGTTGCCCTTTAAC-GTGTTCGCCACAAAGGTTTTCCTTTCCA-AAGTTT
1 TGCCACAAACGTCGTCCTTTAACAG-GTTCGCCACAAAGGTTTGCCTTTCCAGAA-TTT
* * * * * *
9289008 TGCTACAAAGGTTGTCCTTTAACAGGTTCGCTACAAAGGCTTGCCTTTCCAGAGTTT
1 TGCCACAAACGTCGTCCTTTAACAGGTTCGCCACAAAGGTTTGCCTTTCCAGAATTT
9289065 TGCCACA
1 TGCCACA
9289072 GGTTCGCCAC
Statistics
Matches: 145, Mismatches: 27, Indels: 12
0.79 0.15 0.07
Matches are distributed among these distances:
56 4 0.03
57 138 0.95
58 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (57 bp):
TGCCACAAACGTCGTCCTTTAACAGGTTCGCCACAAAGGTTTGCCTTTCCAGAATTT
Found at i:9288901 original size:29 final size:29
Alignment explanation
Indices: 9288867--9289071 Score: 131
Period size: 29 Copynumber: 7.2 Consensus size: 29
9288857 AACAGGTTCA
*
9288867 CCACAAAGGTTTGCCTTTCCAGAATTTTG
1 CCACAAAGGTTTGCCTTTCCAGAGTTTTG
* * * * *
9288896 CCACAAAGGCTAT-CCTTT-TATAGGTTCG
1 CCACAAAGG-TTTGCCTTTCCAGAGTTTTG
* * *
9288924 CCACAAAGGTTTTCCTTTTCAGAGTTTTA
1 CCACAAAGGTTTGCCTTTCCAGAGTTTTG
* *
9288953 CCACAAACG-TTGCCCTTT--A-ACGTGTTCG
1 CCACAAAGGTTTG-CCTTTCCAGA-GT-TTTG
* *
9288981 CCACAAAGGTTTTCCTTTCCAAAGTTTTG
1 CCACAAAGGTTTGCCTTTCCAGAGTTTTG
* * *
9289010 CTACAAAGG-TTGTCCTTTAACAG-G-TTCG
1 CCACAAAGGTTTG-CCTTT-CCAGAGTTTTG
* *
9289038 CTACAAAGGCTTGCCTTTCCAGAGTTTTG
1 CCACAAAGGTTTGCCTTTCCAGAGTTTTG
9289067 CCACA
1 CCACA
9289072 GGTTCGCCAC
Statistics
Matches: 134, Mismatches: 27, Indels: 30
0.70 0.14 0.16
Matches are distributed among these distances:
26 1 0.01
27 8 0.06
28 56 0.42
29 61 0.46
30 7 0.05
31 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (29 bp):
CCACAAAGGTTTGCCTTTCCAGAGTTTTG
Found at i:9288939 original size:28 final size:27
Alignment explanation
Indices: 9288895--9289055 Score: 90
Period size: 28 Copynumber: 5.7 Consensus size: 27
9288885 CCAGAATTTT
* *
9288895 GCCACAAAGGCTATCCTTTTATAGGTTC
1 GCCACAAAGGTTTTCCTTTTA-AGGTTC
* *
9288923 GCCACAAAGGTTTTCCTTTTCAGAGTTTT
1 GCCACAAAGGTTTTCCTTTT-A-AGGTTC
* * * *
9288952 ACCACAAACG-TTGCCCTTTAACGTGTTC
1 GCCACAAAGGTTTTCCTTTTAA-G-GTTC
* * *
9288980 GCCACAAAGGTTTTCCTTTCCAAAGTTTT
1 GCCACAAAGGTTTTCCTTT--TAAGGTTC
* * *
9289009 GCTACAAAGGTTGTCCTTTAACAGGTTC
1 GCCACAAAGGTTTTCCTTTTA-AGGTTC
* * *
9289037 GCTACAAAGGCTTGCCTTT
1 GCCACAAAGGTTTTCCTTT
9289056 CCAGAGTTTT
Statistics
Matches: 101, Mismatches: 25, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
26 1 0.01
27 4 0.04
28 55 0.54
29 38 0.38
30 1 0.01
31 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (27 bp):
GCCACAAAGGTTTTCCTTTTAAGGTTC
Found at i:9288957 original size:114 final size:114
Alignment explanation
Indices: 9288782--9289071 Score: 309
Period size: 114 Copynumber: 2.6 Consensus size: 114
9288772 TCCAGATATA
* * * ** * * * *
9288782 GCCACAAAGG-TGTCCTTTAAAAGGTTCTCCATGAAGGCTTACACTTT-CGGAGTTCTGCCACAA
1 GCCACAAAGGCTATCCTTTAACAGGTTCGCCACAAAGGCTTGC-CTTTCCAGAGTTTTACCACAA
*
9288845 ACGTCGTCCTTAAACAG-GTTCACCACAAAGGTTTGCCTTTCCAGAA-TTTT
65 ACGTCGCCCTTAAAC-GTGTTCACCACAAAGGTTTGCCTTTCCA-AAGTTTT
* * * * *
9288895 GCCACAAAGGCTATCCTTTTATAGGTTCGCCACAAAGGTTTTCCTTTTCAGAGTTTTACCACAAA
1 GCCACAAAGGCTATCCTTTAACAGGTTCGCCACAAAGGCTTGCCTTTCCAGAGTTTTACCACAAA
* * * *
9288960 CGTTGCCCTTTAACGTGTTCGCCACAAAGGTTTTCCTTTCCAAAGTTTT
66 CGTCGCCCTTAAACGTGTTCACCACAAAGGTTTGCCTTTCCAAAGTTTT
* * * * *
9289009 GCTACAAAGGTTGTCCTTTAACAGGTTCGCTACAAAGGCTTGCCTTTCCAGAGTTTTGCCACA
1 GCCACAAAGGCTATCCTTTAACAGGTTCGCCACAAAGGCTTGCCTTTCCAGAGTTTTACCACA
9289072 GGTTCGCCAC
Statistics
Matches: 147, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
113 17 0.12
114 130 0.88
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (114 bp):
GCCACAAAGGCTATCCTTTAACAGGTTCGCCACAAAGGCTTGCCTTTCCAGAGTTTTACCACAAA
CGTCGCCCTTAAACGTGTTCACCACAAAGGTTTGCCTTTCCAAAGTTTT
Found at i:9289073 original size:40 final size:40
Alignment explanation
Indices: 9289029--9289111 Score: 130
Period size: 40 Copynumber: 2.1 Consensus size: 40
9289019 TTGTCCTTTA
* *
9289029 ACAGGTTCGCTACAAAGGCTTGCCTTTCCAGAGTTTTGCC
1 ACAGGTTCGCCACAAAGGCTTGCCTTTCCAAAGTTTTGCC
* *
9289069 ACAGGTTCGCCACAAAGGCTTGCCTTTCTAAATTTTTGCC
1 ACAGGTTCGCCACAAAGGCTTGCCTTTCCAAAGTTTTGCC
9289109 ACA
1 ACA
9289112 AAGGCTGTCT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (40 bp):
ACAGGTTCGCCACAAAGGCTTGCCTTTCCAAAGTTTTGCC
Found at i:9289095 original size:97 final size:97
Alignment explanation
Indices: 9288976--9289164 Score: 279
Period size: 97 Copynumber: 1.9 Consensus size: 97
9288966 CCTTTAACGT
* * * * *
9288976 GTTCGCCACAAAGGTTTTCCTTTCCAAAGTTTTGCTACAAAGGTTGTCCTTTAACAGGTTCGCTA
1 GTTCGCCACAAAGGCTTGCCTTTCCAAAGTTTTGCCACAAAGGCTGTCCTTTAACAGGTTCGCCA
9289041 CAAAGGCTTGCCTTTCCAGAGTTTTGCCACAG
66 CAAAGGCTTGCCTTTCCAGAGTTTTGCCACAG
* * * * *
9289073 GTTCGCCACAAAGGCTTGCCTTTCTAAATTTTTGCCACAAAGGCTGTCTTTTTACAGGTTGGCCA
1 GTTCGCCACAAAGGCTTGCCTTTCCAAAGTTTTGCCACAAAGGCTGTCCTTTAACAGGTTCGCCA
*
9289138 CAAAGGCTTGCCTTTCTAGAGTTTTGC
66 CAAAGGCTTGCCTTTCCAGAGTTTTGC
9289165 TACAAAGGTT
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
97 81 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (97 bp):
GTTCGCCACAAAGGCTTGCCTTTCCAAAGTTTTGCCACAAAGGCTGTCCTTTAACAGGTTCGCCA
CAAAGGCTTGCCTTTCCAGAGTTTTGCCACAG
Found at i:9289139 original size:57 final size:57
Alignment explanation
Indices: 9289069--9289182 Score: 183
Period size: 57 Copynumber: 2.0 Consensus size: 57
9289059 GAGTTTTGCC
*
9289069 ACAGGTTCGCCACAAAGGCTTGCCTTTCTAAATTTTTGCCACAAAGGCTGTCTTTTT
1 ACAGGTTCGCCACAAAGGCTTGCCTTTCTAAAGTTTTGCCACAAAGGCTGTCTTTTT
* * * *
9289126 ACAGGTTGGCCACAAAGGCTTGCCTTTCTAGAGTTTTGCTACAAAGGTTGTCTTTTT
1 ACAGGTTCGCCACAAAGGCTTGCCTTTCTAAAGTTTTGCCACAAAGGCTGTCTTTTT
9289183 TCTGGTGTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (57 bp):
ACAGGTTCGCCACAAAGGCTTGCCTTTCTAAAGTTTTGCCACAAAGGCTGTCTTTTT
Found at i:9289170 original size:29 final size:29
Alignment explanation
Indices: 9289077--9289180 Score: 113
Period size: 29 Copynumber: 3.7 Consensus size: 29
9289067 CCACAGGTTC
*
9289077 GCCACAAAGGCTTGCCTTTCTAAATTTTT
1 GCCACAAAGGCTTGCCTTTCTAAAGTTTT
* * * * *
9289106 GCCACAAAGGC-TGTCTTTTTACAGGTTG
1 GCCACAAAGGCTTGCCTTTCTAAAGTTTT
*
9289134 GCCACAAAGGCTTGCCTTTCTAGAGTTTT
1 GCCACAAAGGCTTGCCTTTCTAAAGTTTT
* *
9289163 GCTACAAAGG-TTGTCTTT
1 GCCACAAAGGCTTGCCTTT
9289181 TTTCTGGTGT
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
28 29 0.48
29 32 0.52
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (29 bp):
GCCACAAAGGCTTGCCTTTCTAAAGTTTT
Found at i:9292153 original size:19 final size:19
Alignment explanation
Indices: 9292129--9292220 Score: 166
Period size: 19 Copynumber: 4.8 Consensus size: 19
9292119 AATCTTCAAG
9292129 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9292148 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
9292167 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9292186 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
9292205 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
9292221 AGATATGATT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 69 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:9292173 original size:38 final size:38
Alignment explanation
Indices: 9292129--9292243 Score: 185
Period size: 38 Copynumber: 2.9 Consensus size: 38
9292119 AATCTTCAAG
9292129 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
9292167 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
*
9292205 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT---AGATATGA-TATGTAATCTTAGA
9292244 GATTTAATTT
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
38 51 0.71
41 8 0.11
42 13 0.18
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.39
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
Found at i:9295304 original size:21 final size:21
Alignment explanation
Indices: 9295278--9295317 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
9295268 TGAATTGCCA
9295278 AAATGGCTCGAAGAAAAGTAT
1 AAATGGCTCGAAGAAAAGTAT
9295299 AAATGGCTCGAAGAAAAGT
1 AAATGGCTCGAAGAAAAGT
9295318 TTAAGGCGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.10, G:0.25, T:0.17
Consensus pattern (21 bp):
AAATGGCTCGAAGAAAAGTAT
Done.