Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70906002
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.33
Warning! 1642329 characters in sequence are not A, C, G, or T
File 62 of 221
Found at i:18112927 original size:29 final size:30
Alignment explanation
Indices: 18112876--18112932 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
18112866 CCTCGACTCT
*
18112876 AACTTTGACAAAATTATGATTTTGCCCCTA
1 AACTTTGACAAAATTATCATTTTGCCCCTA
* * *
18112906 AACTTTTACATAATTA-CATTTTTCCCC
1 AACTTTGACAAAATTATCATTTTGCCCC
18112933 AAGGCTCGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 9 0.39
30 14 0.61
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTGACAAAATTATCATTTTGCCCCTA
Found at i:18115158 original size:22 final size:23
Alignment explanation
Indices: 18115131--18115175 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
18115121 AGGTATCTAC
18115131 AAATTAAATC-TCTAAGATTACA
1 AAATTAAATCTTCTAAGATTACA
*
18115153 AAATTATATCTTCTAAGATTACA
1 AAATTAAATCTTCTAAGATTACA
18115176 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.13, G:0.04, T:0.36
Consensus pattern (23 bp):
AAATTAAATCTTCTAAGATTACA
Found at i:18115183 original size:22 final size:23
Alignment explanation
Indices: 18115141--18115185 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
18115131 AAATTAAATC
*
18115141 TCTAAGATTACAAAATTATATCT
1 TCTAAGATTACAAAATCATATCT
*
18115164 TCTAAGATTAC-ATATCATATCT
1 TCTAAGATTACAAAATCATATCT
18115186 AGGATTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (23 bp):
TCTAAGATTACAAAATCATATCT
Found at i:18121064 original size:22 final size:23
Alignment explanation
Indices: 18121037--18121081 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
18121027 AGGTATCTAC
18121037 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
* *
18121059 AAATCATATCTTTTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
18121082 TATTATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:18127254 original size:85 final size:85
Alignment explanation
Indices: 18127139--18129308 Score: 1327
Period size: 85 Copynumber: 25.7 Consensus size: 85
18127129 CGTCATCGGC
* * * * * *
18127139 CAGCACCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTTGAGCACCATCGGCACCTTGGTGCTT
1 CAGCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTG
18127204 GGATGTGCGGGAGCCTCGAG
66 GGATGTGCGGGAGCCTCGAG
* *
18127224 CAG-AACTGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTAGTGCT
1 CAGCATC-GGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* *
18127288 GGGATATAG-GGGAGCCACGCA-
65 GGGATGT-GCGGGAGCCTCG-AG
* * * * * * * *
18127309 CTGTATCGGCAACTTTGTTGCTC-AGATGTGCGGGAGTCTCGAGCAGCATCGGTACCTTGGTACT
1 CAGCATCGGCACCTTGGTGGCTCGA-ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* * *
18127373 TGGATGTGCGGGAGCCGCTAG
65 GGGATGTGCGGGAGCCTCGAG
* * * ** * *
18127394 CA-CTATCGACACCTTGGCGGCTCAAATGTGCTTCG-GCCTCGAGCACCATCGACACCTTGGTGC
1 CAGC-ATCGGCACCTTGGTGGCTCGAATGTGC-GGGAGCCTCGAGCAGCATCGGCACCTTGGTGC
*
18127457 TGGGATGTGCGGGAGCCTCAAG
64 TGGGATGTGCGGGAGCCTCGAG
* * *
18127479 CCGCATCGGCACCTTGGTGGCTC-AGACGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
1 CAGCATCGGCACCTTGGTGGCTCGA-ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
*
18127543 GGGATGTGGGGGAGCCTCGAG
65 GGGATGTGCGGGAGCCTCGAG
* * * * * * *
18127564 CCGCATCAGCACCTTGGTGGCAC-AGATGTGCGGGAGTCTCGAGCAGCATCGACACCATAGTGCT
1 CAGCATCGGCACCTTGGTGGCTCGA-ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* *** *
18127628 TGGATGTATAGCAGCCTCGAG
65 GGGATGTGCGGGAGCCTCGAG
* * * * ** *
18127649 CAGAATCGGCACCTTGGTGGCTCGAATGTGCGGAAGCAC-CAACCAGCATCGATACCTTGATGCT
1 CAGCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGC-CTCGAGCAGCATCGGCACCTTGGTGCT
18127713 GGGATGTGCGGGAGCCTCGAG
65 GGGATGTGCGGGAGCCTCGAG
* * ** * * * *
18127734 CCGCATCAGCACCTTGGTGGCTCAGATACAT--GAGAGCGTCGAGCACCATCGACACCTTGGTGC
1 CAGCATCGGCACCTTGGTGGCTC-GA-ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGC
* * *
18127797 AGGGATGTTCAGGAGCCTCGAG
64 TGGGATGTGCGGGAGCCTCGAG
* * * * * * *
18127819 CACCATCGGCACCTTGGTTGCTTGGATGTGCGGGAGCCTCGAGTAGCATCGACACCTTGGTGCTT
1 CAGCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTG
*
18127884 GGATGTGCGAGAGCCTCGAG
66 GGATGTGCGGGAGCCTCGAG
* * * * * * * * *
18127904 CACCATCAGCACCTTGGAGGCTCGGATGTACGGGAGCCTTGAGCAACATCGGCACCTTGGTCCAG
1 CAGCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTG
18127969 GGATGTGCGGGAGCCTCGAG
66 GGATGTGCGGGAGCCTCGAG
* * * * * *
18127989 CCGTATTGGTACCTTGGTGGCTC-AGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTCGTGCT
1 CAGCATCGGCACCTTGGTGGCTCGA-ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* **
18128053 AGGATGTAAGGGAGCCTCGAG
65 GGGATGTGCGGGAGCCTCGAG
* * * * * * ** *
18128074 CCGCATCGTCACCTTGGTGGCTCGGATGTGCGGAAGACTCGAGCAGCATCGGTACCTTGAAGCTC
1 CAGCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTG
* * *
18128139 GAAGGTGCGAGAGCCTCGAG
66 GGATGTGCGGGAGCCTCGAG
* * * * * * * *
18128159 CACCATCAGG-ACCTTGATGGGTCGGATATGCGGGAGCCTCGAGCAGTATCGACACCTTGGTGTT
1 CAGCATC-GGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* *
18128223 GGGATGTGCGGCATCCTCGAG
65 GGGATGTGCGGGAGCCTCGAG
* ** * * * *
18128244 TAGCATCGGCACCTTGGT-GCAGGGATGTGCGAGAGCCTCGAGCTGCATCGGCACCTTAGTGGCT
1 CAGCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCT
** * *
18128308 CAGATGCGTGGGAGCCTCGAG
65 GGGATGTGCGGGAGCCTCGAG
* * * * * * * * * * * *
18128329 CACCATCGGAACCTTGGT-GCTGGGATCTACGAGAGCCTTGAGCACCATCGGAAACTTGGTTTCT
1 CAGCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCT
* * *
18128393 CGGATGTGCGGCAGCCTCAAG
65 GGGATGTGCGGGAGCCTCGAG
* * * *
18128414 CAGCATCGGCACCTTGGT-GCTTCG-ATGTGCGGGAGCTTTGAGCCGCATCGGTACCTTGGTGGC
1 CAGCATCGGCACCTTGGTGGC-TCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-G-
* ** * *
18128477 TCTCGAGCACCAT-CGGCA-CCTTG-G
63 -CT-G-GGA-TGTGCGGGAGCCTCGAG
* * ** * * ** * * *
18128501 -TGC-T-GGGATGTGGGGGAGCCTCGAGCCGCAT-CGGCA-CCTTG-GTAGC-TCGG-A--TT--
1 CAGCATCGGCACCTTGGTG-G-CTCGA-ATG--TGCGGGAGCCTCGAGCAGCATCGGCACCTTGG
* * * *
18128554 TGCGGGAGACT-TG-AGCAGCATCG-G
61 TGCTGG-GA-TGTGCGGGAGCCTCGAG
* * ** ** * * * * *
18128578 CA-CCTTGG-TGCTCAGAGG-T-G--CG-GC---AGCCTCGAGCACCATCGGGACATTGGTGGCT
1 CAGCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCT
**
18128633 CAGATGTGCGGGAGCCTCGAG
65 GGGATGTGCGGGAGCCTCGAG
* * * * * * *
18128654 CAGTATCGACACCTTGGT-ACTGGGAA-GTACGGCAGCCTCGAGCTGCATCGGCACCTTGGTGCT
1 CAGCATCGGCACCTTGGTGGCT-CGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* * *
18128717 GAGAGGTGCGGAAGCCTCGAG
65 GGGATGTGCGGGAGCCTCGAG
* * ** * * * * * *
18128738 CTGCATCGACACCTTGGTGGCTC-AGATACGCAGAAGCATCGAGCACCATCAGCACCTTGGTACT
1 CAGCATCGGCACCTTGGTGGCTCGA-ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* ** *
18128802 GGGATCTGAAGAAGCCTCGAG
65 GGGATGTGCGGGAGCCTCGAG
* * * ** * * * * * *
18128823 CACCATCGGCAACTTTGTTACTTGGATGTGCGAGAGTCTCGAGTAGCATCGGCACCTTGGTGCTT
1 CAGCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTG
* * *
18128888 GGATGTGCGGGACCCGCTAG
66 GGATGTGCGGGAGCCTCGAG
* * * * * * *
18128908 CACCATCGGCACCTTGGCGGCTC-AGATGTGTGAGAGCCTCGAGCACCACCGGCACCTTGGTGTT
1 CAGCATCGGCACCTTGGTGGCTCGA-ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
*
18128972 GGGATGTGCGGGAGCCTCAAG
65 GGGATGTGCGGGAGCCTCGAG
* * * * * *
18128993 CCGCATCGGCACCTTGGTGGCTCGGACGTACGGGAGCCTCGAGCACCATCGGTACCTTGGTGCTG
1 CAGCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTG
18129058 GGATGTG-GGAGAGCCTCGAG
66 GGATGTGCGG-GAGCCTCGAG
* * * * *
18129078 CCGCATCGACACCTTGGT-GC-AGAGATGTGCGAGAGCCTCGAGCTGCATCGGCACCTTGGTGGC
1 CAGCATCGGCACCTTGGTGGCTCGA-ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GC
* * *
18129141 TCGGATGCGTGGGAGCCTCGAG
64 TGGGATGTGCGGGAGCCTCGAG
* * * * * * * ** *
18129163 CA-CAATCGGAACCTTGGT-GCTGGGATCTACGAGAGCCTCGAGCATCATCGGCAAATTGGTTTC
1 CAGC-ATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-TGC
* * * *
18129226 TCGGATGTGCTGCAGCCTCAAG
64 TGGGATGTGCGGGAGCCTCGAG
* * * * * *
18129248 CAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCTTTGAGCTGCATCGGTACCTTGGTG
1 CAGCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG
18129309 GCTCTTGACC
Statistics
Matches: 1598, Mismatches: 403, Indels: 169
0.74 0.19 0.08
Matches are distributed among these distances:
66 1 0.00
67 4 0.00
68 3 0.00
69 5 0.00
70 1 0.00
71 2 0.00
72 2 0.00
73 1 0.00
74 6 0.00
75 10 0.01
76 8 0.01
77 11 0.01
78 9 0.01
79 2 0.00
80 2 0.00
81 2 0.00
82 1 0.00
83 6 0.00
84 124 0.08
85 1338 0.84
86 30 0.02
87 9 0.01
88 8 0.01
89 11 0.01
90 2 0.00
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (85 bp):
CAGCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTG
GGATGTGCGGGAGCCTCGAG
Found at i:18127459 original size:170 final size:170
Alignment explanation
Indices: 18127145--18130415 Score: 1063
Period size: 170 Copynumber: 19.4 Consensus size: 170
18127135 CGGCCAGCAC
* * * *
18127145 CGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTTGAGCACCATCGGCACCTTGGTGCTTGGATGT
1 CGGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGT
* * * * * *
18127210 GCGGGAGCCTCGAGCAGAACTGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAGCATCG
66 GCGGGAGCCGCGAGCAGAACTGACACCTTGGCGGCTCAAATGTGCGCGAGCCTCGAGCACCATCG
* * *
18127275 GCACCTTAGTGCTGGGATATAG-GGGAG-C-CACGCACTGTAT
131 ACACCTTAGTGCTGGGATAT-GCGGGAGCCTCAAGC-C-GCAT
* * * * * *
18127315 CGGCAACTTTGTTGCTCAGATGTGCGGGAGTCTCGAGCAGCATCGGTACCTTGGTACTTGGATGT
1 CGGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGT
* ** *
18127380 GCGGGAGCCGCTAGCACTA-TCGACACCTTGGCGGCTCAAATGTGCTTCG-GCCTCGAGCACCAT
66 GCGGGAGCCGCGAGCAGAACT-GACACCTTGGCGGCTCAAATGTGC-GCGAGCCTCGAGCACCAT
* *
18127443 CGACACCTTGGTGCTGGGATGTGCGGGAGCCTCAAGCCGCAT
129 CGACACCTTAGTGCTGGGATATGCGGGAGCCTCAAGCCGCAT
* * *
18127485 CGGCACCTTGGTGGCTCAGACGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGT
1 CGGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGT
* * * * * * * * * * *
18127550 GGGGGAGCCTCGAGCCGCA-TCAGCACCTTGGTGGCACAGATGTGCGGGAGTCTCGAGCAGCATC
66 GCGGGAGCCGCGAGCAGAACTGA-CACCTTGGCGGCTCAAATGTGCGCGAGCCTCGAGCACCATC
* * * *** * * * *
18127614 GACACCATAGTGCTTGGATGTATAGCAGCCTCGAGCAGAAT
130 GACACCTTAGTGCTGGGATATGCGGGAGCCTCAAGCCGCAT
* * * * * ** * *
18127655 CGGCACCTTGGTGGCTC-GAATGTGCGGAAGCAC-CAACCAGCATCGATACCTTGATGCTGGGAT
1 CGGCAACTTGGTGGCTCAG-ATGTGCGGGAGC-CTCGAGCACCATCGGCACCTTGGTGCTTGGAT
* * * * * * **** * *
18127718 GTGCGGGAGCCTCGAGCCGCA-TCAGCACCTTGGTGGCTCAGATACATGAGAGCGTCGAGCACCA
64 GTGCGGGAGCCGCGAGCAGAACTGA-CACCTTGGCGGCTCAAATGTGCGCGAGCCTCGAGCACCA
* * * * * *
18127782 TCGACACCTTGGTGCAGGGATGTTCAGGAGCCTCGAGCAC-CAT
128 TCGACACCTTAGTGCTGGGATATGCGGGAGCCTCAAGC-CGCAT
* * ** * * *
18127825 CGGCACCTTGGTTGCTTGGATGTGCGGGAGCCTCGAGTAGCATCGACACCTTGGTGCTTGGATGT
1 CGGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGT
* * ** * * ** * * * *
18127890 GCGAGAGCCTCGAGCACCA-TCAGCACCTTGGAGGCTCGGATGTACGGGAGCCTTGAGCAACATC
66 GCGGGAGCCGCGAGCAGAACTGA-CACCTTGGCGGCTCAAATGTGCGCGAGCCTCGAGCACCATC
* * * * * * *
18127954 GGCACCTTGGTCCAGGGATGTGCGGGAGCCTCGAGCCGTAT
130 GACACCTTAGTGCTGGGATATGCGGGAGCCTCAAGCCGCAT
* * * * *
18127995 TGGTACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTCGTGCTAGGATGT
1 CGGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGT
** * * * * * ** * *
18128060 AAGGGAGCCTCGAGCCGCA-TCGTCACCTTGGTGGCTCGGATGTGCG-GAAGACTCGAGCAGCAT
66 GCGGGAGCCGCGAGCAGAACT-GACACCTTGGCGGCTCAAATGTGCGCG-AGCCTCGAGCACCAT
** * * * ** * *
18128123 CGGTACCTT-GAAGCTCGAAGGTGCGAGAGCCTCGAGCAC-CAT
129 CGACACCTTAG-TGCTGGGATATGCGGGAGCCTCAAGC-CGCAT
* * * * * ** *
18128165 CAGG-ACCTTGATGGGTCGGATATGCGGGAGCCTCGAGCAGTATCGACACCTTGGTG-TTGGGAT
1 C-GGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTT-GGAT
* * * * * * * **** * **
18128228 GTGCGGCATCCTCGAGTAGCA-TCGGCACCTTGG-TGCAGGGATGTGCGAGAGCCTCGAGCTGCA
64 GTGCGGGAGCCGCGAGCAGAACT-GACACCTTGGCGGCTCAAATGTGCGCGAGCCTCGAGCACCA
* ** ** * *
18128291 TCGGCACCTTAGTGGCTCAGATGCGTGGGAGCCTCGAGCAC-CAT
128 TCGACACCTTAGT-GCTGGGATATGCGGGAGCCTCAAGC-CGCAT
** * * * * * * * *
18128335 CGG-AACCTTGGT-GCTGGGATCTACGAGAGCCTTGAGCACCATCGGAAACTTGGTTTCTCGGAT
1 CGGCAA-CTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGG-TGCTTGGAT
* * * * * * * * * *
18128398 GTGCGGCAGCCTCAAGCAGCA-TCGGCACCTTGG-TGCTTC-GATGTGCGGGAGCTTTGAGC-CG
64 GTGCGGGAGCCGCGAGCAGAACT-GACACCTTGGCGGC-TCAAATGTGCGCGAGCCTCGAGCAC-
** * *
18128459 CATCGGTACCTT-G-G-T-GGCTCT-C--GAG---C-A--C-CAT
126 CATCGACACCTTAGTGCTGGGATATGCGGGAGCCTCAAGCCGCAT
* ** * *
18128490 CGGCACCTTGGT-GCTGGGATGTGGGGGAGCCTCGAGC-CGCATCGGCACCTTGGTAGCTCGGAT
1 CGGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCTTGGAT
* * ** * * * * *
18128553 TTGCGGGAGACTTGAGCAGCA-TCGGCACCTTGG-TGCTCAGAGGTGCG-GCAGCCTCGAGCACC
64 GTGCGGGAGCCGCGAGCAGAACT-GACACCTTGGCGGCTCAAATGTGCGCG-AGCCTCGAGCACC
** * * ** * * * *
18128615 ATCGGGACATTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAGTAT
127 ATCGACACCTTAGT-GCTGGGATATGCGGGAGCCTCAAGCCGCAT
* * * ** * * * ** *
18128660 CGACACCTTGGT-ACTGGGAAGTACGGCAGCCTCGAGCTGCATCGGCACCTTGGTGC-TGAGAGG
1 CGGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTG-GATG
* * * * * * * *
18128723 TGCGGAAGCCTCGAGCTGCA-TCGACACCTTGGTGGCTCAGA--TACGCAGAAGCATCGAGCACC
65 TGCGGGAGCCGCGAGCAGAACT-GACACCTTGGCGGCTCAAATGTGCGC-G-AGCCTCGAGCACC
* * * ** * *
18128785 ATC-AGCACCTTGGTACTGGGATCTGAAGAAGCCTCGAGCAC-CAT
127 ATCGA-CACCTTAGTGCTGGGATATGCGGGAGCCTCAAGC-CGCAT
* ** ** * * * *
18128829 CGGCAACTTTGTTACTTGGATGTGCGAGAGTCTCGAGTAGCATCGGCACCTTGGTGCTTGGATGT
1 CGGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGT
* * ** * * * * *
18128894 GCGGGACCCGCTAGCACCA-TCGGCACCTTGGCGGCTCAGATGTGTGAGAGCCTCGAGCACCACC
66 GCGGGAGCCGCGAGCAGAACT-GACACCTTGGCGGCTCAAATGTGCGCGAGCCTCGAGCACCATC
* * * *
18128958 GGCACCTTGGTGTTGGGATGTGCGGGAGCCTCAAGCCGCAT
130 GACACCTTAGTGCTGGGATATGCGGGAGCCTCAAGCCGCAT
* * * * * *
18128999 CGGCACCTTGGTGGCTCGGACGTACGGGAGCCTCGAGCACCATCGGTACCTTGGTGCTGGGATGT
1 CGGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGT
* * * * ** * * **
18129064 G-GGAGAGCCTCGAGCCGCA-TCGACACCTTGG-TGCAGAGATGTGCGAGAGCCTCGAGCTGCAT
66 GCGG-GAGCCGCGAGCAGAACT-GACACCTTGGCGGCTCAAATGTGCGCGAGCCTCGAGCACCAT
* * * ** * * *
18129126 CGGCACCTTGGTGGCTCGGATGCGTGGGAGCCTCGAGCAC-AAT
129 CGACACCTTAGT-GCTGGGATATGCGGGAGCCTCAAGC-CGCAT
** * * * * ** * *
18129169 CGG-AACCTTGGT-GCTGGGATCTACGAGAGCCTCGAGCATCATCGGCAAATTGGTTTCTCGGAT
1 CGGCAA-CTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGG-TGCTTGGAT
* * * * * * * *** * * * **
18129232 GTGCTGCAGCCTCAAGCAGCA-TCGGCACCTTGG-TGCTTGGATGTGCGGGAGCTTTGAGCTGCA
64 GTGCGGGAGCCGCGAGCAGAACT-GACACCTTGGCGGCTCAAATGTGCGCGAGCCTCGAGCACCA
** * **
18129295 TCGGTACCTT-G-G-T-GG--CT-CTTGA--C-C-A--C-CAT
128 TCGACACCTTAGTGCTGGGATATGCGGGAGCCTCAAGCCGCAT
* ** * *
18129324 CGGCACCTTGGT-GCTGGGATGTTG-GGGAGCCACGAGC-CGCATCGGCACCTTGGTGGCTCGGA
1 CGGCAACTTGGTGGCTCAGATG-TGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCTTGGA
* * * ** * ** * * * ***
18129386 TTTGTGGGAGACTTGAGCAGCA-TCGGTACCTTGG-TGCTCAGAGGTGTAAGAGCCTCGAGCACC
63 TGTGCGGGAGCCGCGAGCAGAACT-GACACCTTGGCGGCTCAAATGTGCGCGAGCCTCGAGCACC
** * ** * * * *
18129449 ATCGGGACCTTGGTGGCTCAGATGTGCAGGAGCCTCGAGCAGCAT
127 ATCGACACCTTAGT-GCTGGGATATGCGGGAGCCTCAAGCCGCAT
* ** * * ** *
18129494 CGACAACTTGGT-GCTGGGATGTACGGCAGCCTCGAGCTGCATCGGCACCTTGGTGC-TGAGAGG
1 CGGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTG-GATG
* * * * * * * ** *
18129557 TGCGGAAGCCTCGAGCTGCA-TCGGCACCTTGGTGGCTCAGATACGCG-GAAGCATCGAGCACCA
65 TGCGGGAGCCGCGAGCAGAACT-GACACCTTGGCGGCTCAAATGTGCGCG-AGCCTCGAGCACCA
* * * * *
18129620 TC-AGCACCTTGGTACTGGGATCTGCAGGAGCCTCGAGCAC-CAT
128 TCGA-CACCTTAGTGCTGGGATATGCGGGAGCCTCAAGC-CGCAT
* ** ** * * ** *
18129663 CGGCAACTTTGTTACTTGGATGTGCGAGAGTCTCGAGCAGTATCGGCACGTTGGTGCTTGGATGT
1 CGGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGT
* * ** * * ** *
18129728 GCGGGAGCCACTAGCACCA-TCGGCACCTTGGCGGCTCAGATGTGCAAGAGCCTCGAGCACCACC
66 GCGGGAGCCGCGAGCAGAACT-GACACCTTGGCGGCTCAAATGTGCGCGAGCCTCGAGCACCATC
* * * *
18129792 GGCACCTTGGTGTTGGGATGTGCGGGAGCCTCAAGCCGCAT
130 GACACCTTAGTGCTGGGATATGCGGGAGCCTCAAGCCGCAT
* * * * * *
18129833 CGGCACCTTGGTGGCTCGGACGTACGGGAGCCTCGAGCACCATCGGCACTTTGGTGCTGGGATGT
1 CGGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGT
* * * * * * * * * * *
18129898 GGGGGAGCCTCGAGCCGCA-TCGGCACCTTGGTGGCTCAGATGTGCGGGAGACTCGAGTAGCATT
66 GCGGGAGCCGCGAGCAGAACT-GACACCTTGGCGGCTCAAATGTGCGCGAGCCTCGAGCACCA-T
* * * * * * **
18129962 TG-TACCTTGGTGTTCGGATGTGCGGGAGCCTTGAGCAC-CAT
129 CGACACCTTAGTGCTGGGATATGCGGGAGCCTCAAGC-CGCAT
* * * * * * * *
18130003 CGGTACCTTGGTGGCTCAGATGTGC-GGAGCCTCGGGTAGCATCGGCACCTTAGTGCTGGGATAT
1 CGGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGT
* * * * * * **
18130067 ACGGGAGCCTCGAGC--AACATCGGCACCTTGGTGACTCAGATGTGCAG-GAGCCTCGAGCAGTA
66 GCGGGAGCCGCGAGCAGAAC-T-GACACCTTGGCGGCTCAAATGTGC-GCGAGCCTCGAGCACCA
* * * * * * *
18130129 TCGGCACCTTGGTGCTGAGATGTGCGAGAGCCTCGAGCAGCAT
128 TCGACACCTTAGTGCTGGGATATGCGGGAGCCTCAAGCCGCAT
* * * * * * *
18130172 CGGCACCTTGATAGCT-TGAATGTGCGGGAGGAC-CGAGCAGCATCGGCACCTTGGTGCTCGGAT
1 CGGCAACTTGGTGGCTCAG-ATGTGCGGGA-GCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
* ** * * * * * * * * * *
18130235 GTGTGGGAGCTTCGAGCCATATC-GGCACCTTGGTGACTCGAACGCGCGGGAG-CTGAGAGCACC
64 GTGCGGGAGCCGCGAG-CAGAACTGACACCTTGGCGGCTCAAATGTGCGCGAGCCT-CGAGCACC
* * * * ** *
18130298 ATCGATAACTTGGTGCTGGGATGTGCGAAAGCCTCGAGCAC-CAT
127 ATCGACACCTTAGTGCTGGGATATGCGGGAGCCTCAAGC-CGCAT
* * * * * * ** *
18130342 -TGCAACCTTGGTTGCTCGGATGTGGGGGAGGCTCGTGCAGTATCGACACCTTGGTGCTTGGATG
1 CGGCAA-CTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATG
18130406 TGCGGGAGCC
65 TGCGGGAGCC
18130416 TCGAACACCA
Statistics
Matches: 2447, Mismatches: 537, Indels: 234
0.76 0.17 0.07
Matches are distributed among these distances:
154 6 0.00
155 212 0.09
156 6 0.00
158 4 0.00
159 4 0.00
160 5 0.00
161 1 0.00
162 6 0.00
163 6 0.00
165 5 0.00
166 4 0.00
167 5 0.00
168 8 0.00
169 418 0.17
170 1726 0.71
171 23 0.01
172 6 0.00
173 2 0.00
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (170 bp):
CGGCAACTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGT
GCGGGAGCCGCGAGCAGAACTGACACCTTGGCGGCTCAAATGTGCGCGAGCCTCGAGCACCATCG
ACACCTTAGTGCTGGGATATGCGGGAGCCTCAAGCCGCAT
Found at i:18128530 original size:70 final size:70
Alignment explanation
Indices: 18128412--18128548 Score: 202
Period size: 70 Copynumber: 2.0 Consensus size: 70
18128402 GGCAGCCTCA
* * * * * *
18128412 AGCAGCATCGGCACCTTGGTGCTTCGATGTGCGGGAGCTTTGAGCCGCATCGGTACCTTGGTGGC
1 AGCACCATCGGCACCTTGGTGCTGCGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTAGC
18128477 TCTCG
66 TCTCG
* *
18128482 AGCACCATCGGCACCTTGGTGCTGGGATGTGGGGGAGCCTCGAGCCGCATCGGCACCTTGGTAGC
1 AGCACCATCGGCACCTTGGTGCTGCGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTAGC
18128547 TC
66 TC
18128549 GGATTTGCGG
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
70 59 1.00
ACGTcount: A:0.14, C:0.28, G:0.35, T:0.23
Consensus pattern (70 bp):
AGCACCATCGGCACCTTGGTGCTGCGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTAGC
TCTCG
Found at i:18128670 original size:240 final size:240
Alignment explanation
Indices: 18128238--18128671 Score: 566
Period size: 240 Copynumber: 1.8 Consensus size: 240
18128228 GTGCGGCATC
* * *
18128238 CTCGAGTAGCATCGGCACCTTGGTGCAGGGATGTGCGAGAGCCTCGAGCTGCATCGGCACCTTAG
1 CTCGAGCACCATCGGCACCTTGGTGCAGGGATGTGCGAGAGCCTCGAGCCGCATCGGCACCTTAG
* * * ** * *
18128303 TGGCTCAGATGCGTGGGAGCCTCGAGCACCATCGGAACCTTGGTGCTGGGATCTACGAGAGCCTT
66 TAGCTCAGATGCGCGGGAGACTCGAGCACCATCGGAACCTTGGTGCTCAGAGCTACGAGAGCCTC
** * *
18128368 GAGCACCATCGGAAACTTGGTTTCTCGGATGTGCGGCAGCCTCAAGCAGCATCGGCACCTTGGTG
131 GAGCACCATCGGAAACTTGGTGGCTCAGATGTGCGGCAGCCTCAAGCAGCATCGACACCTTGGTG
18128433 CTTCGATGTGCGGGAGCTTTGAGCCGCATCGGTACCTTGGTGGCT
196 CTTCGATGTGCGGGAGCTTTGAGCCGCATCGGTACCTTGGTGGCT
* * * *
18128478 CTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGGGGGAGCCTCGAGCCGCATCGGCACCTTGG
1 CTCGAGCACCATCGGCACCTTGGTGCAGGGATGTGCGAGAGCCTCGAGCCGCATCGGCACCTTAG
* ** * * * * *
18128543 TAGCTCGGATTTGCGGGAGACTTGAGCAGCATCGGCACCTTGGTGCTCAGAGGTGCG-GCAGCCT
66 TAGCTCAGATGCGCGGGAGACTCGAGCACCATCGGAACCTTGGTGCTCAGAGCTACGAG-AGCCT
* * * *
18128607 CGAGCACCATCGG-GACATTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAGTATCGACACCTTGG
130 CGAGCACCATCGGAAAC-TTGGTGGCTCAGATGTGCGGCAGCCTCAAGCAGCATCGACACCTTGG
18128671 T
194 T
18128672 ACTGGGAAGT
Statistics
Matches: 162, Mismatches: 30, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
239 3 0.02
240 159 0.98
ACGTcount: A:0.17, C:0.27, G:0.34, T:0.21
Consensus pattern (240 bp):
CTCGAGCACCATCGGCACCTTGGTGCAGGGATGTGCGAGAGCCTCGAGCCGCATCGGCACCTTAG
TAGCTCAGATGCGCGGGAGACTCGAGCACCATCGGAACCTTGGTGCTCAGAGCTACGAGAGCCTC
GAGCACCATCGGAAACTTGGTGGCTCAGATGTGCGGCAGCCTCAAGCAGCATCGACACCTTGGTG
CTTCGATGTGCGGGAGCTTTGAGCCGCATCGGTACCTTGGTGGCT
Found at i:18129366 original size:70 final size:70
Alignment explanation
Indices: 18129251--18129382 Score: 194
Period size: 70 Copynumber: 1.9 Consensus size: 70
18129241 CCTCAAGCAG
* *** * *
18129251 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCTTTGAGCTGCATCGGTACCTTGGTGGCTCTTG
1 CATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCACGAGCCGCATCGGCACCTTGGTGGCTCTTG
18129316 ACCAC
66 ACCAC
18129321 CATCGGCACCTTGGTGCTGGGATGTTG-GGGAGCCACGAGCCGCATCGGCACCTTGGTGGCTC
1 CATCGGCACCTTGGTGCTGGGATG-TGCGGGAGCCACGAGCCGCATCGGCACCTTGGTGGCTC
18129383 GGATTTGTGG
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
70 53 0.96
71 2 0.04
ACGTcount: A:0.13, C:0.27, G:0.35, T:0.25
Consensus pattern (70 bp):
CATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCACGAGCCGCATCGGCACCTTGGTGGCTCTTG
ACCAC
Found at i:18129459 original size:85 final size:84
Alignment explanation
Indices: 18129321--18130510 Score: 921
Period size: 85 Copynumber: 14.0 Consensus size: 84
18129311 TCTTGACCAC
** * * *
18129321 CATCGGCACCTTGGTGCTGGGATGTTG-GGGAGCCACGAGC-CGCATCGGCACCTTGGTGGCTCG
1 CATCGGCACCTTGGTGCTCAGATG-TGCAGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCTGG
* * * *
18129384 GATTTGTGGGAGACTTGAGCAG
63 GATGTGCGGGAGCCTCGAGCAG
* * * * * **
18129406 CATCGGTACCTTGGTGCTCAGAGGTGTAAGAGCCTCGAGCACCATCGGGACCTTGGTGGCTCAGA
1 CATCGGCACCTTGGTGCTCAGATGTGCAGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTGGGA
*
18129471 TGTGCAGGAGCCTCGAGCAG
65 TGTGCGGGAGCCTCGAGCAG
* * ** * ** *
18129491 CATCGACAACTTGGTGCTGGGATGTAC-GGCAGCCTCGAGCTGCATCGGCACCTTGGTGCTGAGA
1 CATCGGCACCTTGGTGCTCAGATGTGCAGG-AGCCTCGAGCACCATCGGCACCTTGGTGCTGGGA
* * *
18129555 GGTGCGGAAGCCTCGAGCTG
65 TGTGCGGGAGCCTCGAGCAG
** * * *
18129575 CATCGGCACCTTGGTGGCTCAGATACGC-GGAAGCATCGAGCACCATCAGCACCTTGGTACTGGG
1 CATCGGCACCTTGGT-GCTCAGATGTGCAGG-AGCCTCGAGCACCATCGGCACCTTGGTGCTGGG
* * *
18129639 ATCTGCAGGAGCCTCGAGCAC
64 ATGTGCGGGAGCCTCGAGCAG
* * * ** * ** * *
18129660 CATCGGCAACTTTGTTACTTGGATGTGC-GAGAGTCTCGAGCAGTATCGGCACGTTGGTGCTTGG
1 CATCGGC-ACCTTGGTGCTCAGATGTGCAG-GAGCCTCGAGCACCATCGGCACCTTGGTGCTGGG
* * *
18129724 ATGTGCGGGAGCCACTAGCAC
64 ATGTGCGGGAGCCTCGAGCAG
* * * *
18129745 CATCGGCACCTTGGCGGCTCAGATGTGCAAGAGCCTCGAGCACCACCGGCACCTTGGTGTTGGGA
1 CATCGGCACCTTGG-TGCTCAGATGTGCAGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGA
* *
18129810 TGTGCGGGAGCCTCAAGCCG
65 TGTGCGGGAGCCTCGAGCAG
* * * * *
18129830 CATCGGCACCTTGGTGGCTCGGACGTACGGGAGCCTCGAGCACCATCGGCACTTTGGTGCTGGGA
1 CATCGGCACCTTGGT-GCTCAGATGTGCAGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGA
* *
18129895 TGTGGGGGAGCCTCGAGCCG
65 TGTGCGGGAGCCTCGAGCAG
* * * * ** * * *
18129915 CATCGGCACCTTGGTGGCTCAGATGTGCGGGAGACTCGAGTAGCATTTGTACCTTGGTGTTCGGA
1 CATCGGCACCTTGGT-GCTCAGATGTGCAGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGA
* *
18129980 TGTGCGGGAGCCTTGAGCAC
65 TGTGCGGGAGCCTCGAGCAG
* * * * *
18130000 CATCGGTACCTTGGTGGCTCAGATGTGC-GGAGCCTCGGGTAGCATCGGCACCTTAGTGCTGGGA
1 CATCGGCACCTTGGT-GCTCAGATGTGCAGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGA
* * *
18130064 TATACGGGAGCCTCGAGCAA
65 TGTGCGGGAGCCTCGAGCAG
** *
18130084 CATCGGCACCTTGGTGACTCAGATGTGCAGGAGCCTCGAGCAGTATCGGCACCTTGGTGCTGAGA
1 CATCGGCACCTTGGTG-CTCAGATGTGCAGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGA
*
18130149 TGTGCGAGAGCCTCGAGCAG
65 TGTGCGGGAGCCTCGAGCAG
* * * * * *
18130169 CATCGGCACCTTGATAGCT-TGAATGTGCGGGAGGAC-CGAGCAGCATCGGCACCTTGGTGCTCG
1 CATCGGCACCTTGGT-GCTCAG-ATGTGCAGGA-GCCTCGAGCACCATCGGCACCTTGGTGCTGG
* *
18130232 GATGTGTGGGAGCTTCGAGCCA-
63 GATGTGCGGGAGCCTCGAG-CAG
* * * * * ** *
18130254 TATCGGCACCTTGGTGACTC-GAACGCGCGGGAG-CTGAGAGCACCATCGATAACTTGGTGCTGG
1 CATCGGCACCTTGGTG-CTCAG-ATGTGCAGGAGCCT-CGAGCACCATCGGCACCTTGGTGCTGG
** *
18130317 GATGTGCGAAAGCCTCGAGCAC
63 GATGTGCGGGAGCCTCGAGCAG
* * ** * * ** * *
18130339 CAT-TGCAACCTTGGTTGCTCGGATGTGGGGGAGGCTCGTGCAGTATCGACACCTTGGTGCTTGG
1 CATCGGC-ACCTTGG-TGCTCAGATGTGCAGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGG
* *
18130403 ATGTGCGGGAGCCTCGAACAC
64 ATGTGCGGGAGCCTCGAGCAG
* * ** * * * * **
18130424 CATCAGCAGCTTGGTGCTGGGATGTGCAAGAGCCTCGAGC-CTAATCTGCACCTTAGTGGCTCAG
1 CATCGGCACCTTGGTGCTCAGATGTGCAGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCTGGG
*
18130488 ATGTGGGGGAGCCTCGAGCAG
64 ATGTGCGGGAGCCTCGAGCAG
18130509 CA
1 CA
18130511 NNNNNNNNNN
Statistics
Matches: 883, Mismatches: 195, Indels: 54
0.78 0.17 0.05
Matches are distributed among these distances:
83 2 0.00
84 150 0.17
85 711 0.81
86 20 0.02
ACGTcount: A:0.19, C:0.26, G:0.35, T:0.21
Consensus pattern (84 bp):
CATCGGCACCTTGGTGCTCAGATGTGCAGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGAT
GTGCGGGAGCCTCGAGCAG
Found at i:18129533 original size:240 final size:239
Alignment explanation
Indices: 18129081--18129548 Score: 584
Period size: 240 Copynumber: 1.9 Consensus size: 239
18129071 CCTCGAGCCG
* *
18129081 CATCGACACCTTGGTGCAGAGATGTGCGAGAGCCTCGAGCTGCATCGGCACCTTGGTGGCTCGGA
1 CATCGACACCTTGGTGCAGAGATGTGCGAGAGCCACGAGCCGCATCGGCACCTTGGTGGCTCGGA
* *
18129146 TGCGTGGGAGCCTCGAGCACAATCGGAACCTTGGTGCTGGGATCTACGAGAGCCTCGAGCATCAT
66 TGCGTGGGAGACTCGAGCACAATCGGAACCTTGGTGCTGGGATCTAC-AGAGCCTCGAGCACCAT
** * * * * *
18129211 CGGCAAATTGGTTTCTCGGATGTGCTGCAGCCTCAAGCAGCATCGGCACCTTGGTGCTTGGATGT
130 CGGCAAATTGGTGGCTCAGATGTGCAGCAGCCTCAAGCAGCATCGACAACTTGGTGCTGGGATGT
* * * * *
18129276 GCGGGAGCTTTGAGCTGCATCGGTACCTTGGTGGCTCTTGACCAC
195 ACGGCAGCCTCGAGCTGCATCGGCACCTTGGTGGCTCTTGACCAC
* * * *
18129321 CATCGGCACCTTGGTGCTGGGATGTTG-GGGAGCCACGAGCCGCATCGGCACCTTGGTGGCTCGG
1 CATCGACACCTTGGTGCAGAGATG-TGCGAGAGCCACGAGCCGCATCGGCACCTTGGTGGCTCGG
** * * *
18129385 ATTTGTGGGAGACTTGAGCAGC-ATCGGTACCTTGGTGCTCAGAGG-TGTA-AGAGCCTCGAGCA
65 ATGCGTGGGAGACTCGAGCA-CAATCGGAACCTTGGTGCT--G-GGATCTACAGAGCCTCGAGCA
* ** * *
18129447 CCATCGGGACCTTGGTGGCTCAGATGTGCAGGAGCCTCGAGCAGCATCGACAACTTGGTGCTGGG
126 CCATCGGCAAATTGGTGGCTCAGATGTGCAGCAGCCTCAAGCAGCATCGACAACTTGGTGCTGGG
18129512 ATGTACGGCAGCCTCGAGCTGCATCGGCACCTTGGTG
191 ATGTACGGCAGCCTCGAGCTGCATCGGCACCTTGGTG
18129549 CTGAGAGGTG
Statistics
Matches: 193, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
240 184 0.95
241 3 0.02
242 4 0.02
243 2 0.01
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.22
Consensus pattern (239 bp):
CATCGACACCTTGGTGCAGAGATGTGCGAGAGCCACGAGCCGCATCGGCACCTTGGTGGCTCGGA
TGCGTGGGAGACTCGAGCACAATCGGAACCTTGGTGCTGGGATCTACAGAGCCTCGAGCACCATC
GGCAAATTGGTGGCTCAGATGTGCAGCAGCCTCAAGCAGCATCGACAACTTGGTGCTGGGATGTA
CGGCAGCCTCGAGCTGCATCGGCACCTTGGTGGCTCTTGACCAC
Found at i:18130036 original size:834 final size:833
Alignment explanation
Indices: 18127162--18130015 Score: 3142
Period size: 834 Copynumber: 3.4 Consensus size: 833
18127152 TTGGTGCCTC
* * * * * *
18127162 GGATGTGCGGGAGCCTTGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCA-
1 GGATGTGCGAGAGTCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCACTAGCAC
* * * ** * * * *
18127226 GAACTGGCACCTTGGTGGCTC-GAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTAGTGCTGG
66 CATC-GGCACCTTGGCGGCTCAG-ATGTGCAAGAGCCTCGAGCACCACCGGCACCTTGGTGTTGG
* * * * * * * * * *
18127290 GATATAG-GGGAG-C-CACGCACTGTATCGGCAACTTTGTTGCTCAGATGTGCGGGAGTCTCGAG
129 GATGT-GCGGGAGCCTCAAGC-C-GCATCGGCACCTTGGTGGCTCGGACGTACGGGAGCCTCGAG
* * * * * * * * * * *
18127352 CAGCATCGGTACCTTGGTACTTGGATGTGCGGGAGCCGCTAGCAC-TATCGACACCTTGGCGGCT
191 CACCATCGGCACCTTGGTGCTGGGATGTGGGGGAGCCTCGAGC-CGCATCGGCACCTTGG-TGCA
* * ** ** * * * * *
18127416 CAAATGTGCTTCG-GCCTCGAGCACCATCGACACCTTGGT-GCTGGGATGTGCGGGAGCCTCAAG
254 GAGATGTGC-GAGAGCCTCGAGCTGCATCGGCACCTTGGTGGCTCGGATGCGTGGGAGCCTCGAG
* ** * * * * *
18127479 C-CGCATCGGCACCTTGGTGGCTCAGA-CGTGCGGGAGCCTCGAGCACCATCGGCACCTTGG-TG
318 CAC-CATCGGAACCTTGGT-GCTGGGATC-TACGAGAGCCTCGAGCACCATCGGAAACTTGGTTT
* * * * * * * *
18127541 CTGGGATGTGGGGGAGCCTCGAGCCGCATCAGCACCTTGGTGGC-ACAGATGTGCGGGAG-TCTC
380 CTCGGATGTGCGGCAGCCTCAAGCAGCATCGGCACCTTGGT-GCTTC-GATGTGCGGGAGCT-TT
* * * * * **
18127604 GAGCAGCATCGACACCATAGTGCTTGGATGTATAGCAGCCTCGAGCAGAATCGGCACCTTGGTGG
442 GAGCCGCATCG-----GTA--CCTTGG-TG----GC--TCTCGACCACCATCGGCACCTTGGT-G
* * * * * * ** * * * * *
18127669 CTCGAATGTGCGGAAG-CACCAACCAGCATCGATACCTTGAT-GCTGGGATGTGCGGGAGCCTCG
492 CTGGGATGTGGGGGAGCCACGAGCC-GCATCGGCACCTTGGTAGCTCGGATTTGCGGGAGACTTG
* * ** * **
18127732 AGCCGCATCAGCACCTTGGTGGCTCAGATACATG-AGAGCGTCGAGCACCATCGACACCTTGGT-
556 AGCAGCATCGGCACCTTGGT-GCTCAG--AGGTGAAGAGCCTCGAGCACCATCGGGACCTTGGTG
*** * * * * * *
18127795 GCAGGGATGTTCAGGAGCCTCGAGCACCATCGGCACCTTGGTTGCTTGGATGTGCGGGAGCCTCG
618 GCTCAGATGTGCAGGAGCCTCGAGCAGCATCGACACCTTGG-TGCTGGGATGTACGGCAGCCTCG
* * ** * *
18127860 AG-TAGCATCGACACCTTGGTGCTTG-GATGTGC-GAGAGCCTCGAGCACCATCAGCACCTTGGA
682 AGCT-GCATCGGCACCTTGGTGC-TGAGAGGTGCGGA-AGCCTCGAGCTGCATCGGCACCTTGGT
* * * * * * * * *
18127922 GGCTCGGATGTACG-GG-AGCCTTGAGCAACATCGGCACCTTGGTCCAGGGATGTGCGGGAGCCT
744 GGCTCAGA--TACGCGGAAGCATCGAGCACCATCAGCACCTTGGTACTGGGATCTGCAGGAGCCT
* * * * * ** *
18127985 CGAGC-CGTATTGGTACCTTGGTGGCTC
807 CGAGCAC-CATCGGCAACTTTGTTACTT
* * * * * * ** * *
18128012 AGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTCGTGCTAGGATGTAAGGGAGCCTCGAGC-C
1 GGATGTGCGAGAGTCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCACTAGCAC
* * * * * * ** * *
18128076 GCATCGTCACCTTGGTGGCTCGGATGTGCGGAAGA--CTCGAGCAGCATCGGTACCTTGAAGCTC
66 -CATCGGCACCTTGGCGGCTCAGATGTGC--AAGAGCCTCGAGCACCACCGGCACCTTGGTGTTG
* * * * * * ** *
18128139 GAAGGTGCGAGAGCCTCGAGCAC-CATCAGG-ACCTTGATGGGTCGGATATGCGGGAGCCTCGAG
128 GGATGTGCGGGAGCCTCAAGC-CGCATC-GGCACCTTGGTGGCTCGGACGTACGGGAGCCTCGAG
** * * * * * ** *
18128202 CAGTATCGACACCTTGGTGTTGGGATGTGCGGCATCCTCGAGTAGCATCGGCACCTTGGTGCAGG
191 CACCATCGGCACCTTGGTGCTGGGATGTGGGGGAGCCTCGAGCCGCATCGGCACCTTGGTGCAGA
* *
18128267 GATGTGCGAGAGCCTCGAGCTGCATCGGCACCTTAGTGGCTCAGATGCGTGGGAGCCTCGAGCAC
256 GATGTGCGAGAGCCTCGAGCTGCATCGGCACCTTGGTGGCTCGGATGCGTGGGAGCCTCGAGCAC
*
18128332 CATCGGAACCTTGGTGCTGGGATCTACGAGAGCCTTGAGCACCATCGGAAACTTGGTTTCTCGGA
321 CATCGGAACCTTGGTGCTGGGATCTACGAGAGCCTCGAGCACCATCGGAAACTTGGTTTCTCGGA
18128397 TGTGCGGCAGCCTCAAGCAGCATCGGCACCTTGGTGCTTCGATGTGCGGGAGCTTTGAGCCGCAT
386 TGTGCGGCAGCCTCAAGCAGCATCGGCACCTTGGTGCTTCGATGTGCGGGAGCTTTGAGCCGCAT
* *
18128462 CGGTACCTTGGTGGCTCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGGGGGAGCCTCGAGC
451 CGGTACCTTGGTGGCTCTCGACCACCATCGGCACCTTGGTGCTGGGATGTGGGGGAGCCACGAGC
18128527 CGCATCGGCACCTTGGTAGCTCGGATTTGCGGGAGACTTGAGCAGCATCGGCACCTTGGTGCTCA
516 CGCATCGGCACCTTGGTAGCTCGGATTTGCGGGAGACTTGAGCAGCATCGGCACCTTGGTGCTCA
** * *
18128592 GAGGTGCGGCAGCCTCGAGCACCATCGGGACATTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAG
581 GAGGTGAAG-AGCCTCGAGCACCATCGGGACCTTGGTGGCTCAGATGTGCAGGAGCCTCGAGCAG
* * *
18128657 TATCGACACCTTGGTACTGGGAAGTACGGCAGCCTCGAGCTGCATCGGCACCTTGGTGCTGAGAG
645 CATCGACACCTTGGTGCTGGGATGTACGGCAGCCTCGAGCTGCATCGGCACCTTGGTGCTGAGAG
* *
18128722 GTGCGGAAGCCTCGAGCTGCATCGACACCTTGGTGGCTCAGATACGCAGAAGCATCGAGCACCAT
710 GTGCGGAAGCCTCGAGCTGCATCGGCACCTTGGTGGCTCAGATACGCGGAAGCATCGAGCACCAT
* *
18128787 CAGCACCTTGGTACTGGGATCTGAAGAAGCCTCGAGCACCATCGGCAACTTTGTTACTT
775 CAGCACCTTGGTACTGGGATCTGCAGGAGCCTCGAGCACCATCGGCAACTTTGTTACTT
* * *
18128846 GGATGTGCGAGAGTCTCGAGTAGCATCGGCACCTTGGTGCTTGGATGTGCGGGACCCGCTAGCAC
1 GGATGTGCGAGAGTCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCACTAGCAC
**
18128911 CATCGGCACCTTGGCGGCTCAGATGTGTGAGAGCCTCGAGCACCACCGGCACCTTGGTGTTGGGA
66 CATCGGCACCTTGGCGGCTCAGATGTGCAAGAGCCTCGAGCACCACCGGCACCTTGGTGTTGGGA
18128976 TGTGCGGGAGCCTCAAGCCGCATCGGCACCTTGGTGGCTCGGACGTACGGGAGCCTCGAGCACCA
131 TGTGCGGGAGCCTCAAGCCGCATCGGCACCTTGGTGGCTCGGACGTACGGGAGCCTCGAGCACCA
* * *
18129041 TCGGTACCTTGGTGCTGGGATGTGGGAGAGCCTCGAGCCGCATCGACACCTTGGTGCAGAGATGT
196 TCGGCACCTTGGTGCTGGGATGTGGGGGAGCCTCGAGCCGCATCGGCACCTTGGTGCAGAGATGT
*
18129106 GCGAGAGCCTCGAGCTGCATCGGCACCTTGGTGGCTCGGATGCGTGGGAGCCTCGAGCACAATCG
261 GCGAGAGCCTCGAGCTGCATCGGCACCTTGGTGGCTCGGATGCGTGGGAGCCTCGAGCACCATCG
*
18129171 GAACCTTGGTGCTGGGATCTACGAGAGCCTCGAGCATCATCGGCAAA-TTGGTTTCTCGGATGTG
326 GAACCTTGGTGCTGGGATCTACGAGAGCCTCGAGCACCATCGG-AAACTTGGTTTCTCGGATGTG
* * *
18129235 CTGCAGCCTCAAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCTTTGAGCTGCATCGGT
390 CGGCAGCCTCAAGCAGCATCGGCACCTTGGTGCTTCGATGTGCGGGAGCTTTGAGCCGCATCGGT
* *
18129300 ACCTTGGTGGCTCTTGACCACCATCGGCACCTTGGTGCTGGGATGTTGGGGAGCCACGAGCCGCA
455 ACCTTGGTGGCTCTCGACCACCATCGGCACCTTGGTGCTGGGATGTGGGGGAGCCACGAGCCGCA
* * *
18129365 TCGGCACCTTGGTGGCTCGGATTTGTGGGAGACTTGAGCAGCATCGGTACCTTGGTGCTCAGAGG
520 TCGGCACCTTGGTAGCTCGGATTTGCGGGAGACTTGAGCAGCATCGGCACCTTGGTGCTCAGAGG
18129430 TGTAAGAGCCTCGAGCACCATCGGGACCTTGGTGGCTCAGATGTGCAGGAGCCTCGAGCAGCATC
585 TG-AAGAGCCTCGAGCACCATCGGGACCTTGGTGGCTCAGATGTGCAGGAGCCTCGAGCAGCATC
*
18129495 GACAACTTGGTGCTGGGATGTACGGCAGCCTCGAGCTGCATCGGCACCTTGGTGCTGAGAGGTGC
649 GACACCTTGGTGCTGGGATGTACGGCAGCCTCGAGCTGCATCGGCACCTTGGTGCTGAGAGGTGC
18129560 GGAAGCCTCGAGCTGCATCGGCACCTTGGTGGCTCAGATACGCGGAAGCATCGAGCACCATCAGC
714 GGAAGCCTCGAGCTGCATCGGCACCTTGGTGGCTCAGATACGCGGAAGCATCGAGCACCATCAGC
18129625 ACCTTGGTACTGGGATCTGCAGGAGCCTCGAGCACCATCGGCAACTTTGTTACTT
779 ACCTTGGTACTGGGATCTGCAGGAGCCTCGAGCACCATCGGCAACTTTGTTACTT
* *
18129680 GGATGTGCGAGAGTCTCGAGCAGTATCGGCACGTTGGTGCTTGGATGTGCGGGAGCCACTAGCAC
1 GGATGTGCGAGAGTCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCACTAGCAC
18129745 CATCGGCACCTTGGCGGCTCAGATGTGCAAGAGCCTCGAGCACCACCGGCACCTTGGTGTTGGGA
66 CATCGGCACCTTGGCGGCTCAGATGTGCAAGAGCCTCGAGCACCACCGGCACCTTGGTGTTGGGA
18129810 TGTGCGGGAGCCTCAAGCCGCATCGGCACCTTGGTGGCTCGGACGTACGGGAGCCTCGAGCACCA
131 TGTGCGGGAGCCTCAAGCCGCATCGGCACCTTGGTGGCTCGGACGTACGGGAGCCTCGAGCACCA
* **
18129875 TCGGCACTTTGGTGCTGGGATGTGGGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCAGATG
196 TCGGCACCTTGGTGCTGGGATGTGGGGGAGCCTCGAGCCGCATCGGCACCTTGGT-GCAGAGATG
* * ** * * * * *
18129940 TGCGGGAGACTCGAG-TAGCATTTGTACCTTGGT-GTTCGGATGTGCGGGAGCCTTGAGCACCAT
260 TGCGAGAGCCTCGAGCT-GCATCGGCACCTTGGTGGCTCGGATGCGTGGGAGCCTCGAGCACCAT
*
18130003 CGGTACCTTGGTG
324 CGGAACCTTGGTG
18130016 GCTCAGATGT
Statistics
Matches: 1723, Mismatches: 244, Indels: 90
0.84 0.12 0.04
Matches are distributed among these distances:
832 10 0.01
833 7 0.00
834 1201 0.70
835 138 0.08
837 2 0.00
841 2 0.00
842 5 0.00
844 2 0.00
848 1 0.00
849 88 0.05
850 253 0.15
851 7 0.00
852 7 0.00
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (833 bp):
GGATGTGCGAGAGTCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCACTAGCAC
CATCGGCACCTTGGCGGCTCAGATGTGCAAGAGCCTCGAGCACCACCGGCACCTTGGTGTTGGGA
TGTGCGGGAGCCTCAAGCCGCATCGGCACCTTGGTGGCTCGGACGTACGGGAGCCTCGAGCACCA
TCGGCACCTTGGTGCTGGGATGTGGGGGAGCCTCGAGCCGCATCGGCACCTTGGTGCAGAGATGT
GCGAGAGCCTCGAGCTGCATCGGCACCTTGGTGGCTCGGATGCGTGGGAGCCTCGAGCACCATCG
GAACCTTGGTGCTGGGATCTACGAGAGCCTCGAGCACCATCGGAAACTTGGTTTCTCGGATGTGC
GGCAGCCTCAAGCAGCATCGGCACCTTGGTGCTTCGATGTGCGGGAGCTTTGAGCCGCATCGGTA
CCTTGGTGGCTCTCGACCACCATCGGCACCTTGGTGCTGGGATGTGGGGGAGCCACGAGCCGCAT
CGGCACCTTGGTAGCTCGGATTTGCGGGAGACTTGAGCAGCATCGGCACCTTGGTGCTCAGAGGT
GAAGAGCCTCGAGCACCATCGGGACCTTGGTGGCTCAGATGTGCAGGAGCCTCGAGCAGCATCGA
CACCTTGGTGCTGGGATGTACGGCAGCCTCGAGCTGCATCGGCACCTTGGTGCTGAGAGGTGCGG
AAGCCTCGAGCTGCATCGGCACCTTGGTGGCTCAGATACGCGGAAGCATCGAGCACCATCAGCAC
CTTGGTACTGGGATCTGCAGGAGCCTCGAGCACCATCGGCAACTTTGTTACTT
Found at i:18130236 original size:127 final size:126
Alignment explanation
Indices: 18129321--18130507 Score: 885
Period size: 127 Copynumber: 9.3 Consensus size: 126
18129311 TCTTGACCAC
* *
18129321 CATCGGCACCTTGGTGCTGGGATGTTG-GGGAGCCACGAGC-CGCATCGGCACCTTGGTGGCTCG
1 CATCGGCACCTTGGTGCTCGGATG-TGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCT-G
* * * * * * * * ***
18129384 -GATTTGTGGGAGACTTGAGCAGCATCGGTACCTTGGTGC-TCAGAGGTGTAAGAGCCTCGAGCA
62 AGATGTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGA-ATGTGCGGGAGCCTCGAGCA
*
18129447 C
126 G
* * * * * * *
18129448 CATCGGGACCTTGGTGGCTCAGATGTGCAGGAGCCTCGAGCAGCATCGACAACTTGGTGCTGGGA
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGAGA
* * * * *
18129513 TGTACG-GCAGCCTCGAGCTGCATCGGCACCTTGGTGC-TGAGAGGTGCGGAAGCCTCGAGCTG
65 TGTGCGAG-AGCCTCGAGCAGCATCGGCACCTTGGTGCTTGA-ATGTGCGGGAGCCTCGAGCAG
* ** * * * * *
18129575 CATCGGCACCTTGGTGGCTCAGATACGCGGAAGCATCGAGCACCATCAGCACCTTGGTACTGGGA
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGAGA
* * * * * * * *
18129640 TCTGC-AGGAGCCTCGAGCACCATCGGCAACTTTGTTACTTGGATGTGCGAGAGTCTCGAGCAG
65 TGTGCGA-GAGCCTCGAGCAGCATCGGC-ACCTTGGTGCTTGAATGTGCGGGAGCCTCGAGCAG
* * * * * * *
18129703 TATCGGCACGTTGGTGCTTGGATGTGCGGGAGCCACTAGCACCATCGGCACCTTGGCGGCTCAGA
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGG-TGCTGAGA
* * * * * *
18129768 TGTGCAAGAGCCTCGAGCACCACCGGCACCTTGGTG-TTGGGATGTGCGGGAGCCTCAAGCCG
65 TGTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCTT-GAATGTGCGGGAGCCTCGAGCAG
* * * *
18129830 CATCGGCACCTTGGTGGCTCGGACGTACGGGAGCCTCGAGCACCATCGGCACTTTGGTGCTGGGA
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGAGA
* * * * * *
18129895 TGTGGGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGC-TCAGATGTGCGGGAGACTCGAGTAG
65 TGTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTTGA-ATGTGCGGGAGCCTCGAGCAG
** * * * * *
18129958 CATTTGTACCTTGGTGTTCGGATGTGCGGGAGCCTTGAGCACCATCGGTACCTTGGTGGCTCAGA
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTGAGA
* * * * * * * *
18130023 TGTGCG-GAGCCTCGGGTAGCATCGGCACCTTAGTGCTGGGATATACGGGAGCCTCGAGCAA
65 TGTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGAATGTGCGGGAGCCTCGAGCAG
* * **
18130084 CATCGGCACCTTGGTGACTCAGATGTGCAGGAGCCTCGAGCAGTATCGGCACCTTGGTGCTGAGA
1 CATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGAGA
* *
18130149 TGTGCGAGAGCCTCGAGCAGCATCGGCACCTTGATAGCTTGAATGTGCGGGAGGAC-CGAGCAG
65 TGTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTTGAATGTGCGGGA-GCCTCGAGCAG
* * *
18130212 CATCGGCACCTTGGTGCTCGGATGTGTGGGAGCTTCGAGC-CATATCGGCACCTTGGTGACTCGA
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTG-CT-GA
* * * * * ** * * * ** *
18130276 -ACGCGCGGGAG-CTGAGAGCACCATCGATAACTTGGTGCTGGGATGTGCGAAAGCCTCGAGCAC
63 GATGTGCGAGAGCCT-CGAGCAGCATCGGCACCTTGGTGCTTGAATGTGCGGGAGCCTCGAGCAG
* * * * ** *
18130339 CAT-TGCAACCTTGGTTGCTCGGATGTGGGGGAGGCTCGTGCAGTATCGACACCTTGGTGCTTG-
1 CATCGGC-ACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGC-TGA
* * * * * * * ** **
18130402 GATGTGCGGGAGCCTCGAACACCATCAGCAGCTTGGTGCTGGGATGTGCAAGAGCCTCGAGCCT
63 GATGTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGAATGTGCGGGAGCCTCGAGCAG
* * * * *
18130466 AATCTGCACCTTAGTGGCTCAGATGTGGGGGAGCCTCGAGCA
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCA
18130508 GCANNNNNNN
Statistics
Matches: 843, Mismatches: 182, Indels: 70
0.77 0.17 0.06
Matches are distributed among these distances:
126 52 0.06
127 510 0.60
128 274 0.33
129 7 0.01
ACGTcount: A:0.19, C:0.26, G:0.35, T:0.21
Consensus pattern (126 bp):
CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGAGAT
GTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGAATGTGCGGGAGCCTCGAGCAG
Found at i:18131114 original size:26 final size:26
Alignment explanation
Indices: 18131080--18131131 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18131070 AATAAAAGAA
*
18131080 AACAATCAATATTTCAGTTTAATTAG
1 AACAATCAATATTTCACTTTAATTAG
*
18131106 AACATTCAATATTTCACTTTAATTAG
1 AACAATCAATATTTCACTTTAATTAG
18131132 CATTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.40
Consensus pattern (26 bp):
AACAATCAATATTTCACTTTAATTAG
Found at i:18132397 original size:239 final size:239
Alignment explanation
Indices: 18131978--18132457 Score: 960
Period size: 239 Copynumber: 2.0 Consensus size: 239
18131968 ATGTGAGACG
18131978 TACGTCGCCGACATATTTGGAGTTTCATTCTCGATCTTGATAAAAAAAAGTAATCTACAGAAAGA
1 TACGTCGCCGACATATTTGGAGTTTCATTCTCGATCTTGATAAAAAAAAGTAATCTACAGAAAGA
18132043 GGAATAAGGAAATCAAATTCAGACTTTGAAGCGTTCCATCACTTTCGACGAGGATTTCAAGATTG
66 GGAATAAGGAAATCAAATTCAGACTTTGAAGCGTTCCATCACTTTCGACGAGGATTTCAAGATTG
18132108 CCTTTCCTCTACGGACAAGAAAGAGGTCGAAACTGTTAGATAAGTATCGAAGGAGTGAAAATGGA
131 CCTTTCCTCTACGGACAAGAAAGAGGTCGAAACTGTTAGATAAGTATCGAAGGAGTGAAAATGGA
18132173 AAATGAAACAAAGGTGTCGATAGGAAATTAACTATTACAAATTC
196 AAATGAAACAAAGGTGTCGATAGGAAATTAACTATTACAAATTC
18132217 TACGTCGCCGACATATTTGGAGTTTCATTCTCGATCTTGATAAAAAAAAGTAATCTACAGAAAGA
1 TACGTCGCCGACATATTTGGAGTTTCATTCTCGATCTTGATAAAAAAAAGTAATCTACAGAAAGA
18132282 GGAATAAGGAAATCAAATTCAGACTTTGAAGCGTTCCATCACTTTCGACGAGGATTTCAAGATTG
66 GGAATAAGGAAATCAAATTCAGACTTTGAAGCGTTCCATCACTTTCGACGAGGATTTCAAGATTG
18132347 CCTTTCCTCTACGGACAAGAAAGAGGTCGAAACTGTTAGATAAGTATCGAAGGAGTGAAAATGGA
131 CCTTTCCTCTACGGACAAGAAAGAGGTCGAAACTGTTAGATAAGTATCGAAGGAGTGAAAATGGA
18132412 AAATGAAACAAAGGTGTCGATAGGAAATTAACTATTACAAATTC
196 AAATGAAACAAAGGTGTCGATAGGAAATTAACTATTACAAATTC
18132456 TA
1 TA
18132458 GTGCATGTCC
Statistics
Matches: 241, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
239 241 1.00
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.26
Consensus pattern (239 bp):
TACGTCGCCGACATATTTGGAGTTTCATTCTCGATCTTGATAAAAAAAAGTAATCTACAGAAAGA
GGAATAAGGAAATCAAATTCAGACTTTGAAGCGTTCCATCACTTTCGACGAGGATTTCAAGATTG
CCTTTCCTCTACGGACAAGAAAGAGGTCGAAACTGTTAGATAAGTATCGAAGGAGTGAAAATGGA
AAATGAAACAAAGGTGTCGATAGGAAATTAACTATTACAAATTC
Found at i:18140221 original size:26 final size:26
Alignment explanation
Indices: 18140191--18140267 Score: 136
Period size: 26 Copynumber: 3.0 Consensus size: 26
18140181 AATAAAAGAA
18140191 AACATTCAATATTTCAGTTTAATTAG
1 AACATTCAATATTTCAGTTTAATTAG
18140217 AACATTCAATATTTCAGTTTAATTAG
1 AACATTCAATATTTCAGTTTAATTAG
* *
18140243 AGCATTCAATATTTCACTTTAATTA
1 AACATTCAATATTTCAGTTTAATTA
18140268 ACATTAATTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.43
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTAG
Found at i:18141752 original size:26 final size:26
Alignment explanation
Indices: 18141722--18141772 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18141712 AATAAAGGAA
18141722 AACATTCAATATTTCAGTTTAATTAC
1 AACATTCAATATTTCAGTTTAATTAC
* *
18141748 AACATTTAATATTTTAGTTTAATTA
1 AACATTCAATATTTCAGTTTAATTA
18141773 ACATTAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTAC
Found at i:18143276 original size:26 final size:26
Alignment explanation
Indices: 18143247--18143298 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18143237 AGAAAAAGAA
*
18143247 AACATTCAATATTTTAGTTTAATTAG
1 AACATTCAATATTTCAGTTTAATTAG
18143273 AACATTCAATATTTCAGTTTAATTAG
1 AACATTCAATATTTCAGTTTAATTAG
18143299 CATTAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTAG
Found at i:18145093 original size:26 final size:26
Alignment explanation
Indices: 18145063--18145113 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
18145053 AATAAAAGAA
18145063 AACATTCAATATTTCAGTTTAATTAC
1 AACATTCAATATTTCAGTTTAATTAC
18145089 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAGTTTAATTA
18145114 GTATTAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.14, G:0.04, T:0.43
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTAC
Found at i:18148203 original size:26 final size:26
Alignment explanation
Indices: 18148173--18148223 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18148163 AATAAAGGAA
18148173 AACATTCAATATTTCAGTTGAATTAC
1 AACATTCAATATTTCAGTTGAATTAC
* * *
18148199 AACATTTAATATTTTAGTTTAATTA
1 AACATTCAATATTTCAGTTGAATTA
18148224 ACATTAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTGAATTAC
Found at i:18149759 original size:26 final size:26
Alignment explanation
Indices: 18149729--18149779 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18149719 AATAAAGGAA
18149729 AACATTCAATATTTCAGTTGAATTAC
1 AACATTCAATATTTCAGTTGAATTAC
* * *
18149755 AACATTTAATATTTTAGTTTAATTA
1 AACATTCAATATTTCAGTTGAATTA
18149780 ACATTAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTGAATTAC
Found at i:18153826 original size:18 final size:17
Alignment explanation
Indices: 18153805--18153839 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
18153795 TTATTATTAA
18153805 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
18153823 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
18153840 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:18153902 original size:17 final size:16
Alignment explanation
Indices: 18153880--18153926 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
18153870 ACTCAAATCA
18153880 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
18153897 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
18153911 TAAATATATGATTTAA
1 T-AATATATGATTTAA
18153927 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:18153927 original size:17 final size:17
Alignment explanation
Indices: 18153899--18153932 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
18153889 ATTATAACTA
*
18153899 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
18153916 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
18153933 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:18154075 original size:93 final size:92
Alignment explanation
Indices: 18153965--18154159 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
18153955 GATTATAGTT
* * *
18153965 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
18154028 ATAAAATTCTTGATAATAAAAATTTTCTTA
64 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
18154058 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
18154123 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
18154150 TATGAATTTA
1 TATGAATTTA
18154160 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 21 0.23
93 68 0.73
94 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:18162133 original size:49 final size:49
Alignment explanation
Indices: 18162067--18162210 Score: 279
Period size: 49 Copynumber: 2.9 Consensus size: 49
18162057 NNNNNNNNAC
18162067 ATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATAT
18162116 ATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATAT
*
18162165 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 ATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACA
18162211 ATTTAGAATT
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 94 1.00
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.32
Consensus pattern (49 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATAT
Found at i:18162925 original size:26 final size:26
Alignment explanation
Indices: 18162895--18162945 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18162885 AATAAAGGAA
18162895 AACATTCAATATTTCAGTTTAATTAC
1 AACATTCAATATTTCAGTTTAATTAC
*
18162921 AACATTCAATATTTTAGTTTAATTA
1 AACATTCAATATTTCAGTTTAATTA
18162946 TCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.39, C:0.12, G:0.04, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTAC
Found at i:18164482 original size:26 final size:26
Alignment explanation
Indices: 18164452--18164502 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18164442 AATAAAAGAA
**
18164452 AACATTCAATATTTCTGTTTAATTAC
1 AACATTCAATATTTCAATTTAATTAC
18164478 AACATTCAATATTTCAATTTAATTA
1 AACATTCAATATTTCAATTTAATTA
18164503 GAATTAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.39, C:0.14, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAC
Found at i:18168020 original size:26 final size:26
Alignment explanation
Indices: 18167990--18168040 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18167980 AATAAAAGAA
*
18167990 AACATTCAATATTTTAGTTTAATTAC
1 AACATTCAATATTTCAGTTTAATTAC
18168016 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAGTTTAATTA
18168041 ACATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.39, C:0.12, G:0.04, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTAC
Found at i:18169862 original size:26 final size:26
Alignment explanation
Indices: 18169832--18169882 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18169822 AATAAAAGAA
18169832 AACATTCAATATTTCAGTTTAATTAC
1 AACATTCAATATTTCAGTTTAATTAC
*
18169858 AACATTCGATATTTCAGTTTAATTA
1 AACATTCAATATTTCAGTTTAATTA
18169883 GCATTAACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.43
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTAC
Found at i:18196138 original size:26 final size:26
Alignment explanation
Indices: 18196102--18196153 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18196092 AATAAAGGAA
18196102 AACATTCAATATTTCAGTTTAATTAG
1 AACATTCAATATTTCAGTTTAATTAG
*
18196128 AACATTGAATATTTCAGTTTAATTAG
1 AACATTCAATATTTCAGTTTAATTAG
18196154 CATTAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTAG
Found at i:18202231 original size:26 final size:26
Alignment explanation
Indices: 18202202--18202253 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18202192 AATAAATGAA
*
18202202 AACATTCAATATTTCAGTTTAATTAG
1 AACATTCAATATATCAGTTTAATTAG
18202228 AACATTCAATATATCAGTTTAATTAG
1 AACATTCAATATATCAGTTTAATTAG
18202254 CATTAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (26 bp):
AACATTCAATATATCAGTTTAATTAG
Found at i:18204592 original size:41 final size:40
Alignment explanation
Indices: 18204507--18204646 Score: 172
Period size: 41 Copynumber: 3.5 Consensus size: 40
18204497 ATTGATCTCG
* * * * * *
18204507 GTTTCGCACACTTAGTTCCCGTTATTAACATTATTTTTTG
1 GTTTCGCACACTTAGTGCTCGTTATCAACATCATTATTTA
* *
18204547 GTTTCGTACACTTAGTGCTCGTTATCCAACATCATTACTTA
1 GTTTCGCACACTTAGTGCTCGTTAT-CAACATCATTATTTA
*
18204588 GTTTCGCACACTTAGTTCTCGTTATTCAACATCATTATTTA
1 GTTTCGCACACTTAGTGCTCGTTA-TCAACATCATTATTTA
*
18204629 ATTTCGCACACTTAGTGC
1 GTTTCGCACACTTAGTGC
18204647 AAACCATATA
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
40 22 0.26
41 62 0.73
42 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (40 bp):
GTTTCGCACACTTAGTGCTCGTTATCAACATCATTATTTA
Found at i:18206049 original size:76 final size:76
Alignment explanation
Indices: 18205908--18206049 Score: 185
Period size: 76 Copynumber: 1.9 Consensus size: 76
18205898 AGACATGGGC
* * * ***
18205908 GTGTGTCATCTAATGAGTTGTTTAGGCTGCAAGTTAGTGAGTTACACGTCCTAACACATGGCCTA
1 GTGTGTCATCTAATGAGTTCTTTAGGCTGCAAGTCAGTGAGTTACACGGCCTAACACACAACCTA
18205973 GTGAAATGGTT
66 GTGAAATGGTT
* * ** *
18205984 GTGTGTCATCTGATGAGTTCTTTAGGGTGCAAGTCAGTGAGTTACGTGGCCTAATACACAACCTA
1 GTGTGTCATCTAATGAGTTCTTTAGGCTGCAAGTCAGTGAGTTACACGGCCTAACACACAACCTA
18206049 G
66 G
18206050 CACATGGGCG
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
76 55 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (76 bp):
GTGTGTCATCTAATGAGTTCTTTAGGCTGCAAGTCAGTGAGTTACACGGCCTAACACACAACCTA
GTGAAATGGTT
Found at i:18209701 original size:43 final size:43
Alignment explanation
Indices: 18209653--18209743 Score: 182
Period size: 43 Copynumber: 2.1 Consensus size: 43
18209643 TTCTCATCCC
18209653 AATTTTACCCCTAGTAAAATTATGATGATTTTACCCAAGGTAA
1 AATTTTACCCCTAGTAAAATTATGATGATTTTACCCAAGGTAA
18209696 AATTTTACCCCTAGTAAAATTATGATGATTTTACCCAAGGTAA
1 AATTTTACCCCTAGTAAAATTATGATGATTTTACCCAAGGTAA
18209739 AATTT
1 AATTT
18209744 CGACAAAATA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.36
Consensus pattern (43 bp):
AATTTTACCCCTAGTAAAATTATGATGATTTTACCCAAGGTAA
Found at i:18212632 original size:30 final size:30
Alignment explanation
Indices: 18212598--18212655 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
18212588 AGCTTAGGGA
*
18212598 CAAAAGTGTAATTATGCAAAAGTTTGGGGG
1 CAAAAGTGTAATTATGCAAAAATTTGGGGG
* * *
18212628 CAAAATTGTAATTTTTCAAAAATTTGGG
1 CAAAAGTGTAATTATGCAAAAATTTGGG
18212656 TGGTGGATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.33
Consensus pattern (30 bp):
CAAAAGTGTAATTATGCAAAAATTTGGGGG
Found at i:18212918 original size:18 final size:18
Alignment explanation
Indices: 18212895--18212930 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
18212885 ATTCTAAAAG
* *
18212895 TGTGGTTAAGTTTTGAAA
1 TGTGGTAAAGTGTTGAAA
18212913 TGTGGTAAAGTGTTGAAA
1 TGTGGTAAAGTGTTGAAA
18212931 ATATGGGTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.39
Consensus pattern (18 bp):
TGTGGTAAAGTGTTGAAA
Found at i:18213055 original size:33 final size:33
Alignment explanation
Indices: 18212986--18213140 Score: 117
Period size: 33 Copynumber: 4.6 Consensus size: 33
18212976 ATATAAAGGG
*
18212986 GGTTGCTAAGTGCTGATT-CCC--C-CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
*
18213013 GGTTGCTAAGTGTTGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
*
18213046 GGTTGCTAAGTGCTGATTCCACCGTACTTTAAATGTTAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CCG-AC--T-CA--TT---GGT
* * *
18213088 GGTTTCTAAGTGTTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
18213121 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
18213141 ACCATATCTT
Statistics
Matches: 101, Mismatches: 10, Indels: 28
0.73 0.07 0.20
Matches are distributed among these distances:
27 17 0.17
28 3 0.03
30 1 0.01
31 2 0.02
32 4 0.04
33 37 0.37
34 3 0.03
35 4 0.04
37 2 0.02
38 2 0.02
40 3 0.03
41 3 0.03
42 18 0.18
43 2 0.02
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.34
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
Found at i:18213132 original size:75 final size:76
Alignment explanation
Indices: 18213009--18213219 Score: 318
Period size: 75 Copynumber: 2.8 Consensus size: 76
18212999 TGATTCCCCC
*
18213009 AAGGGGTTGCTAAGTGTTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTA-C
1 AAGGGGTTACTAAGTGTTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
*
18213073 TTTAAATGTTA
66 TTTAAATGTGA
* * *
18213084 AAGGGGTTTCTAAGTGTTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCATATC
1 AAGGGGTTACTAAGTGTTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
*
18213149 TTTGAATGTGA
66 TTTAAATGTGA
* * * *
18213160 CA-GGGTTAGTAAGTGTTGATTCCCCGACTCACTGGTGGTTGCTAAGTGCTGAATCCACCG
1 AAGGGGTTACTAAGTGTTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCG
18213220 GTAACAGTTG
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
75 112 0.91
76 11 0.09
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.33
Consensus pattern (76 bp):
AAGGGGTTACTAAGTGTTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
TTTAAATGTGA
Found at i:18220243 original size:18 final size:18
Alignment explanation
Indices: 18220216--18220250 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
18220206 TTATAAAAAT
* *
18220216 GTGGTTAAGTTTTGAAAG
1 GTGGTAAAGTGTTGAAAG
18220234 GTGGTAAAGTGTTGAAA
1 GTGGTAAAGTGTTGAAA
18220251 ATATGGGTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (18 bp):
GTGGTAAAGTGTTGAAAG
Found at i:18220425 original size:75 final size:76
Alignment explanation
Indices: 18220330--18220529 Score: 280
Period size: 75 Copynumber: 2.7 Consensus size: 76
18220320 GATTCCCCCA
* *
18220330 AGGGGTTGCTAAGTATTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTA-CT
1 AGGGGTTGCTAAGTGTTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCATATCT
18220394 TTAAATGTGA-
66 TTAAATGTGAT
* * * *
18220404 AGGGGGTTTCTAAGTGCTGATT-CCCGAATCATTGGTGGTTGCTAAGTGTTGATTCCACCATATC
1 A-GGGGTTGCTAAGTGTTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCATATC
*
18220468 TTTGAATGTGAT
65 TTTAAATGTGAT
* * *
18220480 AGGGGTTGGTAAGTGTTGATTCTCCGACTCACTGGTGGTTGCTAAGTGCT
1 AGGGGTTGCTAAGTGTTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCT
18220530 AAATCCACTG
Statistics
Matches: 108, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
74 38 0.35
75 45 0.42
76 25 0.23
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.35
Consensus pattern (76 bp):
AGGGGTTGCTAAGTGTTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCATATCT
TTAAATGTGAT
Found at i:18228250 original size:38 final size:38
Alignment explanation
Indices: 18228164--18228253 Score: 99
Period size: 38 Copynumber: 2.4 Consensus size: 38
18228154 AACATGCCAA
* * * **
18228164 TTTGCTCATAAGGGTTATTTCATCTGATAACATGCTAG
1 TTTGCTCATAAGAGTTATTCCATCCGATAACAAACTAG
* * * *
18228202 TTTACCCATAAGAGTTATTCCATCCGATAACAAATTAT
1 TTTGCTCATAAGAGTTATTCCATCCGATAACAAACTAG
18228240 TTTGCTCATAAGAG
1 TTTGCTCATAAGAG
18228254 CTAAAATTGG
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (38 bp):
TTTGCTCATAAGAGTTATTCCATCCGATAACAAACTAG
Found at i:18229770 original size:30 final size:31
Alignment explanation
Indices: 18229735--18229797 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 31
18229725 AGTCTATATC
18229735 TTTATAATTTTTAA-AGGACTAAA-TGAAATT
1 TTTATAA-TTTTAAGAGGACTAAAGTGAAATT
* *
18229765 TTTATAATTTTAAGGGGACTAAAGTGTAATT
1 TTTATAATTTTAAGAGGACTAAAGTGAAATT
18229796 TT
1 TT
18229798 ACCTTTACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 6 0.21
30 15 0.52
31 8 0.28
ACGTcount: A:0.38, C:0.03, G:0.14, T:0.44
Consensus pattern (31 bp):
TTTATAATTTTAAGAGGACTAAAGTGAAATT
Found at i:18252294 original size:47 final size:47
Alignment explanation
Indices: 18252243--18252606 Score: 613
Period size: 47 Copynumber: 7.7 Consensus size: 47
18252233 TTAGGATTCT
* * *
18252243 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
18252290 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
18252337 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
18252384 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
18252431 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
18252478 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
18252525 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
18252572 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
18252607 TCCCGAAGGG
Statistics
Matches: 303, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
46 1 0.00
47 302 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:18252781 original size:37 final size:37
Alignment explanation
Indices: 18252725--18252803 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
18252715 CCGAGCTCTA
* * *
18252725 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
18252762 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
18252799 AAGAC
1 AAGAC
18252804 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:18266609 original size:38 final size:38
Alignment explanation
Indices: 18266545--18266737 Score: 226
Period size: 38 Copynumber: 5.1 Consensus size: 38
18266535 ACTTTTTAAT
* ** * *
18266545 ACACCGGCACTAAGCCTGTTAAGCACAAAGCTTAAATA
1 ACACTGGCACTAAGCCTACTAGGCACAAAGCCTAAATA
* *
18266583 ACACTGGCAC-AATGCCTACTAGGCACAATGCCTGAATA
1 ACACTGGCACTAA-GCCTACTAGGCACAAAGCCTAAATA
* * * *
18266621 ACACCGGCACGAAGCCTACTAGGCACGAAGCCTTAATA
1 ACACTGGCACTAAGCCTACTAGGCACAAAGCCTAAATA
18266659 ACACTGGCACTAAGCCTACTAGGCACAAAGCCTAAATA
1 ACACTGGCACTAAGCCTACTAGGCACAAAGCCTAAATA
* * * **
18266697 ATACTGGCACTAAGCCTGCTAAGCACAAAGCCCGAATA
1 ACACTGGCACTAAGCCTACTAGGCACAAAGCCTAAATA
18266735 ACA
1 ACA
18266738 ATACAAGTCC
Statistics
Matches: 132, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
37 2 0.02
38 128 0.97
39 2 0.02
ACGTcount: A:0.37, C:0.29, G:0.18, T:0.16
Consensus pattern (38 bp):
ACACTGGCACTAAGCCTACTAGGCACAAAGCCTAAATA
Found at i:18266676 original size:76 final size:76
Alignment explanation
Indices: 18266545--18266737 Score: 255
Period size: 76 Copynumber: 2.5 Consensus size: 76
18266535 ACTTTTTAAT
*
18266545 ACACCGGCACTAAGCCTGTTAAGCACAAAG-CTTAAATAACACTGGCACAATGCCTACTAGGCAC
1 ACACCGGCACTAAGCCTGCTAAGCACAAAGCCTT-AATAACACTGGCACAATGCCTACTAGGCAC
* *
18266609 AATGCCTGAATA
65 AAAGCCTAAATA
* * * *
18266621 ACACCGGCACGAAGCCTACTAGGCACGAAGCCTTAATAACACTGGCACTAA-GCCTACTAGGCAC
1 ACACCGGCACTAAGCCTGCTAAGCACAAAGCCTTAATAACACTGGCAC-AATGCCTACTAGGCAC
18266685 AAAGCCTAAATA
65 AAAGCCTAAATA
* * **
18266697 ATACTGGCACTAAGCCTGCTAAGCACAAAGCCCGAATAACA
1 ACACCGGCACTAAGCCTGCTAAGCACAAAGCCTTAATAACA
18266738 ATACAAGTCC
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
76 95 0.95
77 5 0.05
ACGTcount: A:0.37, C:0.29, G:0.18, T:0.16
Consensus pattern (76 bp):
ACACCGGCACTAAGCCTGCTAAGCACAAAGCCTTAATAACACTGGCACAATGCCTACTAGGCACA
AAGCCTAAATA
Found at i:18269651 original size:27 final size:27
Alignment explanation
Indices: 18269610--18269746 Score: 136
Period size: 27 Copynumber: 5.1 Consensus size: 27
18269600 TCGATATCTG
* *
18269610 GACCGAAATACCCTCGA-AGGGTAAAAT
1 GACCAAAATAACCTC-ATAGGGTAAAAT
18269637 GACCAAAATAACCTCATAGGGTAAAAT
1 GACCAAAATAACCTCATAGGGTAAAAT
18269664 GACCAAAATAACCTCATAGGGTAAAAT
1 GACCAAAATAACCTCATAGGGTAAAAT
** * * *
18269691 GACTGAAAT-ACCCCTATAAGGT-GAAT
1 GACCAAAATAACCTC-ATAGGGTAAAAT
* * * *
18269717 GACCGAAATACCCCCATGGGGTAAAAT
1 GACCAAAATAACCTCATAGGGTAAAAT
18269744 GAC
1 GAC
18269747 TGGTATACCC
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.22
27 73 0.78
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.18
Consensus pattern (27 bp):
GACCAAAATAACCTCATAGGGTAAAAT
Found at i:18269700 original size:54 final size:53
Alignment explanation
Indices: 18269610--18269748 Score: 156
Period size: 54 Copynumber: 2.6 Consensus size: 53
18269600 TCGATATCTG
** * *
18269610 GACCGAAATACCCTCGA-AGGGTAAAATGACCAAAATA-ACCTCATAGGGTAAAAT
1 GACCGAAATACCCTC-ATAGGGTAAAATGACTGAAATACCCCT-ATAAGGT-AAAT
* * *
18269664 GACCAAAATAACCTCATAGGGTAAAATGACTGAAATACCCCTATAAGGTGAAT
1 GACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCTATAAGGTAAAT
* *
18269717 GACCGAAATACCCCCATGGGGTAAAATGACTG
1 GACCGAAATACCCTCATAGGGTAAAATGACTG
18269749 GTATACCCGA
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
53 32 0.44
54 37 0.51
55 3 0.04
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.18
Consensus pattern (53 bp):
GACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCTATAAGGTAAAT
Found at i:18270169 original size:28 final size:28
Alignment explanation
Indices: 18270133--18270262 Score: 143
Period size: 28 Copynumber: 4.6 Consensus size: 28
18270123 TATTATTATA
*
18270133 TTAGGCTAAAGCCCAGACTGATACTATT
1 TTAGGCTAAAGCCCACACTGATACTATT
* *
18270161 TTGGGCTAAAGCCCACACTGATATTATT
1 TTAGGCTAAAGCCCACACTGATACTATT
* ** *
18270189 TTAGGCCAAAGCCCACACTGATACCGTG
1 TTAGGCTAAAGCCCACACTGATACTATT
* * * *
18270217 TTAGGCTAAGGCTCACACTGATACTGTA
1 TTAGGCTAAAGCCCACACTGATACTATT
* *
18270245 TTGGGCTAAGGCCCACAC
1 TTAGGCTAAAGCCCACAC
18270263 AGTTTTGTTA
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 86 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (28 bp):
TTAGGCTAAAGCCCACACTGATACTATT
Found at i:18270728 original size:72 final size:72
Alignment explanation
Indices: 18270645--18270785 Score: 273
Period size: 72 Copynumber: 2.0 Consensus size: 72
18270635 TGCTTCTGCG
18270645 TTGCTTACATATTTTATACTACTAATTAAGTGAAAACAAATTTTTAAAATAATTACTGTTTTCAA
1 TTGCTTACATATTTTATACTACTAATTAAGTGAAAACAAATTTTTAAAATAATTACTGTTTTCAA
18270710 AGATCTT
66 AGATCTT
*
18270717 TTGCTTACATATTTTATACTACTAATTAAGTGAAAACAAATTTTTAAAATAATTATTGTTTTCAA
1 TTGCTTACATATTTTATACTACTAATTAAGTGAAAACAAATTTTTAAAATAATTACTGTTTTCAA
18270782 AGAT
66 AGAT
18270786 ACGAACTTTA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (72 bp):
TTGCTTACATATTTTATACTACTAATTAAGTGAAAACAAATTTTTAAAATAATTACTGTTTTCAA
AGATCTT
Found at i:18272089 original size:27 final size:27
Alignment explanation
Indices: 18272048--18272181 Score: 121
Period size: 27 Copynumber: 5.0 Consensus size: 27
18272038 TCGATATCTG
*
18272048 GACCGAAATACCCTCGA-AGGGTAAAAT
1 GACCGAAATAACCTC-ATAGGGTAAAAT
*
18272075 GACCAAAATAACCTCATAGGGTAAAAT
1 GACCGAAATAACCTCATAGGGTAAAAT
* * *
18272102 GACTGAAATACCCCCATAGGGTAAAAT
1 GACCGAAATAACCTCATAGGGTAAAAT
* * * *
18272129 GACTGAAAT-ACCCCTATAAGGT-GAAT
1 GACCGAAATAACCTC-ATAGGGTAAAAT
* * *
18272155 GACCGAAATACCCCCATGGGGTAAAAT
1 GACCGAAATAACCTCATAGGGTAAAAT
18272182 AACTTGTATA
Statistics
Matches: 89, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
26 21 0.24
27 68 0.76
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.18
Consensus pattern (27 bp):
GACCGAAATAACCTCATAGGGTAAAAT
Found at i:18272155 original size:26 final size:27
Alignment explanation
Indices: 18272067--18272181 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 27
18272057 ACCCTCGAAG
** * * *
18272067 GGTAAAATGACCAAAATAACCTCATAG
1 GGTAAAATGACTGAAATACCCCCATAA
*
18272094 GGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCCATAA
*
18272121 GGTAAAATGACTGAAATACCCCTATAA
1 GGTAAAATGACTGAAATACCCCCATAA
* * **
18272148 GGT-GAATGACCGAAATACCCCCATGG
1 GGTAAAATGACTGAAATACCCCCATAA
18272174 GGTAAAAT
1 GGTAAAAT
18272182 AACTTGTATA
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
26 21 0.28
27 54 0.72
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACTGAAATACCCCCATAA
Found at i:18272170 original size:53 final size:54
Alignment explanation
Indices: 18272048--18272181 Score: 157
Period size: 54 Copynumber: 2.5 Consensus size: 54
18272038 TCGATATCTG
* *
18272048 GACCGAAATACCCTCGA-AGGGTAAAATGACCAAAATAACCTCATAGGGTAAAAT
1 GACCGAAATACCC-CCATAGGGTAAAATGACCAAAATAACCTCATAAGGTAAAAT
* ** * *
18272102 GACTGAAATACCCCCATAGGGTAAAATGACTGAAAT-ACCCCTATAAGGT-GAAT
1 GACCGAAATACCCCCATAGGGTAAAATGACCAAAATAACCTC-ATAAGGTAAAAT
*
18272155 GACCGAAATACCCCCATGGGGTAAAAT
1 GACCGAAATACCCCCATAGGGTAAAAT
18272182 AACTTGTATA
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
53 34 0.49
54 35 0.51
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.18
Consensus pattern (54 bp):
GACCGAAATACCCCCATAGGGTAAAATGACCAAAATAACCTCATAAGGTAAAAT
Found at i:18272607 original size:28 final size:28
Alignment explanation
Indices: 18272571--18272700 Score: 143
Period size: 28 Copynumber: 4.6 Consensus size: 28
18272561 TATTATTATA
*
18272571 TTAGGCTAAAGCCCAGACTGATACTATT
1 TTAGGCTAAAGCCCACACTGATACTATT
* *
18272599 TTGGGCTAAAGCCCACACTGATATTATT
1 TTAGGCTAAAGCCCACACTGATACTATT
* ** *
18272627 TTAGGCCAAAGCCCACACTGATACCGTG
1 TTAGGCTAAAGCCCACACTGATACTATT
* * * *
18272655 TTAGGCTAAGGCTCACACTGATACTGTA
1 TTAGGCTAAAGCCCACACTGATACTATT
* *
18272683 TTGGGCTAAGGCCCACAC
1 TTAGGCTAAAGCCCACAC
18272701 AGTTTTGTTA
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 86 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (28 bp):
TTAGGCTAAAGCCCACACTGATACTATT
Found at i:18274556 original size:27 final size:27
Alignment explanation
Indices: 18274518--18274681 Score: 172
Period size: 27 Copynumber: 6.1 Consensus size: 27
18274508 TCGATATCTG
18274518 GACCGAAATACCCTCGA-AGGGTAAAAT
1 GACCGAAATACCCTC-ATAGGGTAAAAT
* * *
18274545 GACCAAAATACCATAATAGGGTAAAAT
1 GACCGAAATACCCTCATAGGGTAAAAT
** *
18274572 GACAAAAATAACCTCATAGGGTAAAAT
1 GACCGAAATACCCTCATAGGGTAAAAT
* *
18274599 GACTGAAATACCCTCATAGGGTAGAAT
1 GACCGAAATACCCTCATAGGGTAAAAT
* * *
18274626 GATCGAAATACCC-CTATAAGGT-GAAT
1 GACCGAAATACCCTC-ATAGGGTAAAAT
* *
18274652 GACCGAAATACCCCCATGGGGTAAAAT
1 GACCGAAATACCCTCATAGGGTAAAAT
18274679 GAC
1 GAC
18274682 TGGTATACCC
Statistics
Matches: 115, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
26 23 0.20
27 92 0.80
ACGTcount: A:0.43, C:0.20, G:0.20, T:0.18
Consensus pattern (27 bp):
GACCGAAATACCCTCATAGGGTAAAAT
Found at i:18275104 original size:28 final size:28
Alignment explanation
Indices: 18275066--18275225 Score: 160
Period size: 28 Copynumber: 5.7 Consensus size: 28
18275056 ACTATTATTA
* * *
18275066 TATTAGGCTAAAGCCCAGACTGATACTA
1 TATTGGGCTAAAGCCCACACTGATACTG
* * *
18275094 TTTTGGGCTAAAGCCCACACTGATATTA
1 TATTGGGCTAAAGCCCACACTGATACTG
* * * *
18275122 TTTTGGGCCAAAGGCCACACTGATACCG
1 TATTGGGCTAAAGCCCACACTGATACTG
* * * *
18275150 TGTTAGGCTAAGGCTCACACTGATACTG
1 TATTGGGCTAAAGCCCACACTGATACTG
*
18275178 TATTGGGCT-AAGCCCCACACTGTTACTG
1 TATTGGGCTAAAG-CCCACACTGATACTG
*
18275206 TATTGGGCTAAGGCCCACAC
1 TATTGGGCTAAAGCCCACAC
18275226 AGTTTTGTTA
Statistics
Matches: 108, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
27 2 0.02
28 104 0.96
29 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (28 bp):
TATTGGGCTAAAGCCCACACTGATACTG
Found at i:18279910 original size:17 final size:18
Alignment explanation
Indices: 18279890--18279928 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
18279880 TGTAATTTAG
* *
18279890 TTTTTGGTTTTCT-TTTC
1 TTTTAGGTTTTATATTTC
18279907 TTTTAGGTTTTATATTTC
1 TTTTAGGTTTTATATTTC
18279925 TTTT
1 TTTT
18279929 CAGTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.08, C:0.08, G:0.10, T:0.74
Consensus pattern (18 bp):
TTTTAGGTTTTATATTTC
Found at i:18280802 original size:24 final size:24
Alignment explanation
Indices: 18280752--18280800 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
18280742 GAACTGGTCA
*
18280752 TGGAGAGAATTGAGGAGGGATATT
1 TGGAGAGAATTGAGGAGAGATATT
*
18280776 TGGAGAGATTTGAGGAGAGAGTATT
1 TGGAGAGAATTGAGGAGAGA-TATT
18280801 GGGATTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.33, C:0.00, G:0.41, T:0.27
Consensus pattern (24 bp):
TGGAGAGAATTGAGGAGAGATATT
Found at i:18281231 original size:18 final size:17
Alignment explanation
Indices: 18281208--18281242 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
18281198 GTTGGGCCGG
18281208 AATGGGCAGTGTGGGCTC
1 AATGGGC-GTGTGGGCTC
*
18281226 AATGGGCTTGTGGGCTC
1 AATGGGCGTGTGGGCTC
18281243 CACAGGAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.14, C:0.17, G:0.43, T:0.26
Consensus pattern (17 bp):
AATGGGCGTGTGGGCTC
Found at i:18281480 original size:27 final size:27
Alignment explanation
Indices: 18281441--18281545 Score: 142
Period size: 27 Copynumber: 3.9 Consensus size: 27
18281431 ATCTGCATCG
* *
18281441 AAATACCCTCATAGGGTAAAATGATCA
1 AAATACCCCCATAGGGTAAAATGAACA
*
18281468 AAATACCCCCATAGGGTAAAAT-AACCG
1 AAATACCCCCATAGGGTAAAATGAA-CA
*
18281495 AAATACCTCCATAGGGTAAAAT-AACTA
1 AAATACCCCCATAGGGTAAAATGAAC-A
18281522 AAATACCCCCATAGGGTAAAATGA
1 AAATACCCCCATAGGGTAAAATGA
18281546 CTGTTATGGC
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 2 0.03
27 66 0.96
28 1 0.01
ACGTcount: A:0.46, C:0.21, G:0.14, T:0.19
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGAACA
Found at i:18281525 original size:54 final size:54
Alignment explanation
Indices: 18281439--18281543 Score: 169
Period size: 54 Copynumber: 1.9 Consensus size: 54
18281429 ATATCTGCAT
*
18281439 CGAAATACCCTCATAGGGTAAAATGATCAAAATACCCCCATAGGGTAAAATAAC
1 CGAAATACCCTCATAGGGTAAAATAATCAAAATACCCCCATAGGGTAAAATAAC
18281493 CGAAATA-CCTCCATAGGGTAAAATAA-CTAAAATACCCCCATAGGGTAAAAT
1 CGAAATACCCT-CATAGGGTAAAATAATC-AAAATACCCCCATAGGGTAAAAT
18281544 GACTGTTATG
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
53 4 0.08
54 44 0.92
ACGTcount: A:0.45, C:0.22, G:0.14, T:0.19
Consensus pattern (54 bp):
CGAAATACCCTCATAGGGTAAAATAATCAAAATACCCCCATAGGGTAAAATAAC
Found at i:18284370 original size:13 final size:13
Alignment explanation
Indices: 18284352--18284376 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18284342 TTTATTAGTG
18284352 AAAGAGTACATAT
1 AAAGAGTACATAT
18284365 AAAGAGTACATA
1 AAAGAGTACATA
18284377 CAAATTTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.16, T:0.20
Consensus pattern (13 bp):
AAAGAGTACATAT
Found at i:18284457 original size:20 final size:20
Alignment explanation
Indices: 18284395--18284457 Score: 51
Period size: 20 Copynumber: 3.1 Consensus size: 20
18284385 ATACTAATAT
18284395 ATAATTATGTTCAACCTTTA
1 ATAATTATGTTCAACCTTTA
* *
18284415 ATTGATATTA--TTCAA-ATAATA
1 A-T-A-ATTATGTTCAACCT-TTA
18284436 ATAATTATGTTCAACCTTTA
1 ATAATTATGTTCAACCTTTA
18284456 AT
1 AT
18284458 TATGTTCAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
18 4 0.12
19 1 0.03
20 12 0.38
21 10 0.31
22 1 0.03
23 4 0.12
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.44
Consensus pattern (20 bp):
ATAATTATGTTCAACCTTTA
Found at i:18284780 original size:19 final size:19
Alignment explanation
Indices: 18284756--18284795 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
18284746 TTCATTTTAT
18284756 TTATTAAACCAAATCTTCA
1 TTATTAAACCAAATCTTCA
18284775 TTATTAAACCAAATCTTCA
1 TTATTAAACCAAATCTTCA
18284794 TT
1 TT
18284796 CTTCGTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (19 bp):
TTATTAAACCAAATCTTCA
Found at i:18286464 original size:11 final size:11
Alignment explanation
Indices: 18286448--18286474 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
18286438 TAGAAATTAG
18286448 TTTGTGAAACT
1 TTTGTGAAACT
18286459 TTTGTGAAACT
1 TTTGTGAAACT
18286470 TTTGT
1 TTTGT
18286475 ATTTATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:18291494 original size:91 final size:92
Alignment explanation
Indices: 18291368--18291560 Score: 284
Period size: 91 Copynumber: 2.1 Consensus size: 92
18291358 TTGATTTTAG
* *
18291368 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAA-TTATATATCACTATTAAATTA
1 TAAATTCATATAAGAACAATTTATTATCAAGAATTTTATGAAATTTA-ATATCACTATTAAATTA
* *
18291432 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
18291460 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTTAATATTATTATTAAATTAT
1 TAAATTCATATAAGAACAATTTATTATCAAGAATTTTATGAAATTTAATATCACTATTAAATTAT
18291524 ATGTAATAATTATTATTTTAAATTATA
66 ATGTAATAATTATTATTTTAAATTATA
*
18291551 CAAATTCATA
1 TAAATTCATA
18291561 AACTATAATC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
91 70 0.76
92 22 0.24
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAACAATTTATTATCAAGAATTTTATGAAATTTAATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:18291618 original size:17 final size:17
Alignment explanation
Indices: 18291593--18291626 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
18291583 ATAATTTTAA
*
18291593 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
18291610 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
18291627 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:18291628 original size:15 final size:16
Alignment explanation
Indices: 18291593--18291631 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
18291583 ATAATTTTAA
*
18291593 ATTTTATTAAATCATAT
1 ATTTAATTAAATCA-AT
18291610 ATTTAATTAAATC-AT
1 ATTTAATTAAATCAAT
18291625 ATTTAAT
1 ATTTAAT
18291632 ATTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
17 12 0.57
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTAATTAAATCAAT
Found at i:18291635 original size:17 final size:18
Alignment explanation
Indices: 18291597--18291636 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
18291587 TTTTAAATTT
*
18291597 TATTAAATCATATATTTA
1 TATTAAATCATATATTAA
18291615 -ATTAAATCATAT-TTAA
1 TATTAAATCATATATTAA
18291631 TATTAA
1 TATTAA
18291637 TTATTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTAAATCATATATTAA
Found at i:18291746 original size:16 final size:16
Alignment explanation
Indices: 18291725--18291766 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
18291715 TTATTAAATT
*
18291725 ATATATTTTAATTATA
1 ATATATTTTAATAATA
18291741 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
18291756 AT-TATGTTTAA
1 ATATAT-TTTAA
18291767 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:18291751 original size:15 final size:15
Alignment explanation
Indices: 18291716--18291757 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
18291706 TTAAGAATTT
*
18291716 TATTAAATTAT-ATA
1 TATTTAATTATAATA
18291730 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
18291744 TATTTAATAATAAT
1 TATTTAATTATAAT
18291758 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:18291860 original size:155 final size:156
Alignment explanation
Indices: 18291700--18292013 Score: 560
Period size: 155 Copynumber: 2.0 Consensus size: 156
18291690 AGAAGAATTT
*
18291700 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
18291765 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAA-TA
66 AAATATGATTAAATTATTTATTATTGAT-TTAATAATCTTATTAAAATTTAAATAACAATAACAA
*
18291829 -AATAATTTACCAAAACAAATTTCTGC
130 TAATAATTTACCAAAACAAATTTATGC
18291855 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
18291920 AAATATGATTAAATTATTTATTGTTGATTTAATAATCTTATTAAAATTTAAATAACAATAACAAT
66 AAATATGATTAAATTATTTATTATTGATTTAATAATCTTATTAAAATTTAAATAACAATAACAAT
*
18291985 AATCATTTACCAAAACAAATTTATGC
131 AATAATTTACCAAAACAAATTTATGC
18292011 TAA
1 TAA
18292014 GGGTATTCTA
Statistics
Matches: 152, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
154 33 0.22
155 92 0.61
156 27 0.18
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (156 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATTTAATAATCTTATTAAAATTTAAATAACAATAACAAT
AATAATTTACCAAAACAAATTTATGC
Found at i:18291895 original size:18 final size:17
Alignment explanation
Indices: 18291867--18291901 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
18291857 ATTATTAAGA
*
18291867 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
18291884 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
18291902 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:18292157 original size:16 final size:16
Alignment explanation
Indices: 18292136--18292203 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
18292126 GATTTGCTAT
18292136 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
18292152 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
18292168 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
18292184 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
18292200 TACA
1 TACA
18292204 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:18303434 original size:687 final size:687
Alignment explanation
Indices: 18302121--18303494 Score: 2739
Period size: 687 Copynumber: 2.0 Consensus size: 687
18302111 TTATAAGAAG
18302121 GCTCATATATGTATAATAGATGAATTGAGTTGCATTATGGGATGTGTATTGATAGATATTGAGAA
1 GCTCATATATGTATAATAGATGAATTGAGTTGCATTATGGGATGTGTATTGATAGATATTGAGAA
18302186 TATGTGCATTATGTCAAATTGCTAATTTATATGTTATAATATCTTGAATCATGAAACTACCACTG
66 TATGTGCATTATGTCAAATTGCTAATTTATATGTTATAATATCTTGAATCATGAAACTACCACTG
18302251 AGCTTTATCGCTCAGCGTACAGTTTGTTTATTTCATGCGCAGGTTTAGGTAATTCCCGAAGCCTG
131 AGCTTTATCGCTCAGCGTACAGTTTGTTTATTTCATGCGCAGGTTTAGGTAATTCCCGAAGCCTG
18302316 AAAGGTGAAGTCAACTTTCGATCTATAGCCATTAACTCAATATAGTTTGTAAAGTTCCTTTCATT
196 AAAGGTGAAGTCAACTTTCGATCTATAGCCATTAACTCAATATAGTTTGTAAAGTTCCTTTCATT
18302381 TTGTCAAATGGCATGTACTTAGGATTATCTTGTTTCAAATTTTAAATGGTCAATTTTATGAATAA
261 TTGTCAAATGGCATGTACTTAGGATTATCTTGTTTCAAATTTTAAATGGTCAATTTTATGAATAA
18302446 TGTTGTGAGTGAAATGAAATGAAATGAAATGGCTAACATTTATGTATGGTAAAAGTGTTAGTGGC
326 TGTTGTGAGTGAAATGAAATGAAATGAAATGGCTAACATTTATGTATGGTAAAAGTGTTAGTGGC
18302511 TTGAAAATGGTATTTTGAGCATGTCTATTTGTGTTGAAAGGATGATTGGGGCCTTAAGGCCAAAC
391 TTGAAAATGGTATTTTGAGCATGTCTATTTGTGTTGAAAGGATGATTGGGGCCTTAAGGCCAAAC
18302576 ATTGTTGTCATATGTTAGGTTAAATCAAATAAAATTGAGAACATAATGGACTATCAAGAATGTCG
456 ATTGTTGTCATATGTTAGGTTAAATCAAATAAAATTGAGAACATAATGGACTATCAAGAATGTCG
18302641 TGATATTAGCTCTCCTCGTCACGACGTCGACCGTGTTATGTTTTGGAAATTTTACAATTTGGTCC
521 TGATATTAGCTCTCCTCGTCACGACGTCGACCGTGTTATGTTTTGGAAATTTTACAATTTGGTCC
18302706 TCAGGGTTGGGAAGCTTGTTTCTTGTATTCAAGGTCACATCACTAAACCTTGGAAATCGTGACAC
586 TCAGGGTTGGGAAGCTTGTTTCTTGTATTCAAGGTCACATCACTAAACCTTGGAAATCGTGACAC
*
18302771 CAGTCTAGAAAGTTTTGAAAATGTTGTAGTTTAGTCA
651 CAGTCTAGAAAGTTTTAAAAATGTTGTAGTTTAGTCA
18302808 GCTCATATATGTATAATAGATGAATTGAGTTGCATTATGGGATGTGTATTGATAGATATTGAGAA
1 GCTCATATATGTATAATAGATGAATTGAGTTGCATTATGGGATGTGTATTGATAGATATTGAGAA
18302873 TATGTGCATTATGTCAAATTGCTAATTTATATGTTATAATATCTTGAATCATGAAACTACCACTG
66 TATGTGCATTATGTCAAATTGCTAATTTATATGTTATAATATCTTGAATCATGAAACTACCACTG
18302938 AGCTTTATCGCTCAGCGTACAGTTTGTTTATTTCATGCGCAGGTTTAGGTAATTCCCGAAGCCTG
131 AGCTTTATCGCTCAGCGTACAGTTTGTTTATTTCATGCGCAGGTTTAGGTAATTCCCGAAGCCTG
18303003 AAAGGTGAAGTCAACTTTCGATCTATAGCCATTAACTCAATATAGTTTGTAAAGTTCCTTTCATT
196 AAAGGTGAAGTCAACTTTCGATCTATAGCCATTAACTCAATATAGTTTGTAAAGTTCCTTTCATT
18303068 TTGTCAAATGGCATGTACTTAGGATTATCTTGTTTCAAATTTTAAATGGTCAATTTTATGAATAA
261 TTGTCAAATGGCATGTACTTAGGATTATCTTGTTTCAAATTTTAAATGGTCAATTTTATGAATAA
18303133 TGTTGTGAGTGAAATGAAATGAAATGAAATGGCTAACATTTATGTATGGTAAAAGTGTTAGTGGC
326 TGTTGTGAGTGAAATGAAATGAAATGAAATGGCTAACATTTATGTATGGTAAAAGTGTTAGTGGC
18303198 TTGAAAATGGTATTTTGAGCATGTCTATTTGTGTTGAAAGGATGATTGGGGCCTTAAGGCCAAAC
391 TTGAAAATGGTATTTTGAGCATGTCTATTTGTGTTGAAAGGATGATTGGGGCCTTAAGGCCAAAC
18303263 ATTGTTGTCATATGTTAGGTTAAATCAAATAAAATTGAGAACATAATGGACTATCAAGAATGTCG
456 ATTGTTGTCATATGTTAGGTTAAATCAAATAAAATTGAGAACATAATGGACTATCAAGAATGTCG
18303328 TGATATTAGCTCTCCTCGTCACGACGTCGACCGTGTTATGTTTTGGAAATTTTACAATTTGGTCC
521 TGATATTAGCTCTCCTCGTCACGACGTCGACCGTGTTATGTTTTGGAAATTTTACAATTTGGTCC
18303393 TCAGGGTTGGGAAGCTTGTTTCTTGTATTCAAGGTCACATCACTAAACCTTGGAAATCGTGACAC
586 TCAGGGTTGGGAAGCTTGTTTCTTGTATTCAAGGTCACATCACTAAACCTTGGAAATCGTGACAC
18303458 CAGTCTAGAAAGTTTTAAAAATGTTGTAGTTTAGTCA
651 CAGTCTAGAAAGTTTTAAAAATGTTGTAGTTTAGTCA
18303495 TTGTTCGACC
Statistics
Matches: 686, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
687 686 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (687 bp):
GCTCATATATGTATAATAGATGAATTGAGTTGCATTATGGGATGTGTATTGATAGATATTGAGAA
TATGTGCATTATGTCAAATTGCTAATTTATATGTTATAATATCTTGAATCATGAAACTACCACTG
AGCTTTATCGCTCAGCGTACAGTTTGTTTATTTCATGCGCAGGTTTAGGTAATTCCCGAAGCCTG
AAAGGTGAAGTCAACTTTCGATCTATAGCCATTAACTCAATATAGTTTGTAAAGTTCCTTTCATT
TTGTCAAATGGCATGTACTTAGGATTATCTTGTTTCAAATTTTAAATGGTCAATTTTATGAATAA
TGTTGTGAGTGAAATGAAATGAAATGAAATGGCTAACATTTATGTATGGTAAAAGTGTTAGTGGC
TTGAAAATGGTATTTTGAGCATGTCTATTTGTGTTGAAAGGATGATTGGGGCCTTAAGGCCAAAC
ATTGTTGTCATATGTTAGGTTAAATCAAATAAAATTGAGAACATAATGGACTATCAAGAATGTCG
TGATATTAGCTCTCCTCGTCACGACGTCGACCGTGTTATGTTTTGGAAATTTTACAATTTGGTCC
TCAGGGTTGGGAAGCTTGTTTCTTGTATTCAAGGTCACATCACTAAACCTTGGAAATCGTGACAC
CAGTCTAGAAAGTTTTAAAAATGTTGTAGTTTAGTCA
Found at i:18309340 original size:15 final size:14
Alignment explanation
Indices: 18309293--18309340 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
18309283 GTTACTACGT
18309293 TTTAATTTAATAAA
1 TTTAATTTAATAAA
** *
18309307 TTTTTTTTAAAAAA
1 TTTAATTTAATAAA
18309321 CTTTAATTTACATAAA
1 -TTTAATTTA-ATAAA
18309337 TTTA
1 TTTA
18309341 TAGATTATTA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
14 11 0.42
15 11 0.42
16 4 0.15
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTAATTTAATAAA
Found at i:18319553 original size:32 final size:32
Alignment explanation
Indices: 18319499--18319559 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
18319489 AAATAAACAC
18319499 ATAATTATTCATTTAATATTATAACTATTCAA
1 ATAATTATTCATTTAATATTATAACTATTCAA
*
18319531 ATAA-TATT-ATTTAAATAGTTATAATTATT
1 ATAATTATTCATTT-AATA-TTATAACTATT
18319560 TTGCAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 4 0.15
31 8 0.31
32 14 0.54
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (32 bp):
ATAATTATTCATTTAATATTATAACTATTCAA
Found at i:18320729 original size:48 final size:48
Alignment explanation
Indices: 18320674--18320767 Score: 170
Period size: 48 Copynumber: 2.0 Consensus size: 48
18320664 CTGAATACCT
* *
18320674 TTCTAAAATTGGAGGATATCCATTGTAACACAATCCATAGTTAATATC
1 TTCTAAAACTGGAGGATATCCATTATAACACAATCCATAGTTAATATC
18320722 TTCTAAAACTGGAGGATATCCATTATAACACAATCCATAGTTAATA
1 TTCTAAAACTGGAGGATATCCATTATAACACAATCCATAGTTAATA
18320768 GTTTTCTTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (48 bp):
TTCTAAAACTGGAGGATATCCATTATAACACAATCCATAGTTAATATC
Found at i:18323525 original size:16 final size:16
Alignment explanation
Indices: 18323504--18323543 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
18323494 GATCCTCCAG
*
18323504 GCGGGTTAGGTCACAC
1 GCGGGTCAGGTCACAC
*
18323520 GCGGGTCGGGTCACAC
1 GCGGGTCAGGTCACAC
18323536 GCGGGTCA
1 GCGGGTCA
18323544 TCCCTCTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.15, C:0.28, G:0.42, T:0.15
Consensus pattern (16 bp):
GCGGGTCAGGTCACAC
Found at i:18326377 original size:170 final size:172
Alignment explanation
Indices: 18326085--18326426 Score: 670
Period size: 170 Copynumber: 2.0 Consensus size: 172
18326075 TCGACTAAAA
18326085 AAAACAAAAGTTGGAGTTGCCACCGATCCTTGATTGAGGTGTGATCGGCTCACCTTAAAAATGAT
1 AAAACAAAAGTTGGAGTTGCCACCGATCCTTGATTGAGGTGTGATCGGCTCACCTTAAAAATGAT
18326150 TTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCAGTTACACACGAGAAGGGTTAGCACCC
66 TTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCAGTTACACACGAGAAGGGTTAGCACCC
18326215 TCGTAACGCCCAAAAATCGGTACCAAATTTGATTATTTTATG
131 TCGTAACGCCCAAAAATCGGTACCAAATTTGATTATTTTATG
18326257 AAAA-AAAA-TTGGAGTTGCCACCGATCCTTGATTGAGGTGTGATCGGCTCACCTTAAAAATGAT
1 AAAACAAAAGTTGGAGTTGCCACCGATCCTTGATTGAGGTGTGATCGGCTCACCTTAAAAATGAT
18326320 TTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCAGTTACACACGAGAAGGGTTAGCACCC
66 TTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCAGTTACACACGAGAAGGGTTAGCACCC
18326385 TCGTAACGCCCAAAAATCGGTACCAAATTTGATTATTTTATG
131 TCGTAACGCCCAAAAATCGGTACCAAATTTGATTATTTTATG
18326427 CCTTTGATGT
Statistics
Matches: 170, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
170 162 0.95
171 4 0.02
172 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (172 bp):
AAAACAAAAGTTGGAGTTGCCACCGATCCTTGATTGAGGTGTGATCGGCTCACCTTAAAAATGAT
TTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCAGTTACACACGAGAAGGGTTAGCACCC
TCGTAACGCCCAAAAATCGGTACCAAATTTGATTATTTTATG
Found at i:18327270 original size:3 final size:3
Alignment explanation
Indices: 18327262--18327307 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
18327252 TAAGTATTGA
*
18327262 AAT AAT AAT AAC AAT AAT AAT AATT AAT -AT AAT AA- AATT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AA-T AAT AAT
18327307 A
1 A
18327308 TAAGAGAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
2 4 0.11
3 28 0.76
4 5 0.14
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:18328674 original size:44 final size:42
Alignment explanation
Indices: 18328590--18328826 Score: 140
Period size: 44 Copynumber: 5.4 Consensus size: 42
18328580 GAATTACTGG
* * * * *
18328590 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCAC--TAACC-TAGGGAGATAAGATCTGACAT
* * *
18328635 CTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTAA--CCTAGGGAGATAAGATCTGACAT
* **
18328679 CTTCAATCTATTCCACTGCCAACC-AGGGAGAT-AGAAT-T-ACGG
1 CTTCAATCTACTCCACT---AACCTAGGGAGATAAG-ATCTGACAT
* * * * *
18328721 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCAC--TAACC-TAGGGAGATAAGATCTGACAT
* * *
18328766 CTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGAAAT
1 CTTCAATCTACTCCACTAA--CCTAGGGAGATAAGATCTGACAT
*
18328810 CTTCAATCTATTCCACT
1 CTTCAATCTACTCCACT
18328827 GCTGCCCGCG
Statistics
Matches: 145, Mismatches: 32, Indels: 31
0.70 0.15 0.15
Matches are distributed among these distances:
41 4 0.03
42 15 0.10
43 18 0.12
44 73 0.50
45 33 0.23
47 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (42 bp):
CTTCAATCTACTCCACTAACCTAGGGAGATAAGATCTGACAT
Found at i:18328957 original size:132 final size:131
Alignment explanation
Indices: 18328545--18329213 Score: 979
Period size: 131 Copynumber: 5.1 Consensus size: 131
18328535 GCCGTCATGA
* * *
18328545 CTTCAATCTATTCCACTACACTACCAGGGAAGTAAGAATTACTGGCTTCAATGTACTCCACTGTA
1 CTTCAATCTATTCCACT--GCTGCCCGGGAAGT-AGAATTACTGGCTTCAATGTACTCCACTGTA
18328610 ACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTG
63 ACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTG
18328675 AAAT
128 AAAT
** *
18328679 CTTCAATCTATTCCACTGCCAACCAGGG-AGATAGAATTAC-GGCTTCAATGTACTCCACTGTAA
1 CTTCAATCTATTCCACTG-CTGCCCGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAA
18328742 CCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGA
64 CCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGA
18328807 AAT
129 AAT
*
18328810 CTTCAATCTATTCCACTGCTGCCCGCGGAAGTAGAATTACTAGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCG-GGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* *
18328875 CACAGGGCGGTAAAATCTACCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGAA
65 CACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGAA
18328940 AT
130 AT
*
18328942 CTTCAATCTATTCCACTGCTGCCCGCGGAAGTAGAATTACTAGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCG-GGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* * * * * * * *
18329007 CACAGGGAGGTAAAAT-TCACCATCTTTGATCTGCCCCAC-ACTACTTAGGGAGACAAGATTTGA
65 CACAGGGAGGTAAAATCT-GCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGA
18329070 AAT
129 AAT
* * *
18329073 CTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAAT
1 CTTCAATCTATTCCACTGCTGCCC-GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* ** * *
18329138 CACAGGGAGGTAAAAT-TCGCCATCTTTGATCTGCTCCACTACCGCTTAGGGAGACAAGATCTGA
65 CACAGGGAGGTAAAATCT-GCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGA
18329202 AAT
129 AAT
18329205 CTTCAATCT
1 CTTCAATCT
18329214 GCTCTACTGC
Statistics
Matches: 501, Mismatches: 26, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
130 4 0.01
131 239 0.48
132 232 0.46
133 9 0.02
134 17 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (131 bp):
CTTCAATCTATTCCACTGCTGCCCGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
ACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGAAA
T
Found at i:18329058 original size:263 final size:262
Alignment explanation
Indices: 18328545--18329213 Score: 979
Period size: 263 Copynumber: 2.5 Consensus size: 262
18328535 GCCGTCATGA
* * *
18328545 CTTCAATCTATTCCACTACACTACCAGGGAAGTAAGAATTACTGGCTTCAATGTACTCCACTGTA
1 CTTCAATCTATTCCACT--GCTGCCCGGGAAGT-AGAATTACTGGCTTCAATGTACTCCACTGTA
18328610 ACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTG
63 ACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTG
*
18328675 AAATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACGGCTTCAATGTACTCCACTGT
128 AAATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACAGCTTCAATGTACTCCACTGT
* * * *
18328740 AACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCT
193 AACCACAGGGAGGTAAAATCTACCATCTTCGATCTGCCCCACTAATACCTAGGGAGACAAGATCT
18328805 GAAAT
258 GAAAT
*
18328810 CTTCAATCTATTCCACTGCTGCCCGCGGAAGTAGAATTACTAGCTTCAATGTACTCCACTGTAAC
1 CTTCAATCTATTCCACTGCTGCCCG-GGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* *
18328875 CACAGGGCGGTAAAATCTACCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGAA
65 CACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGAA
** *
18328940 ATCTTCAATCTATTCCACTG-CTGCCCGCGGA-AGTAGAATTACTAGCTTCAATGTACTCCACTG
130 ATCTTCAATCTATTCCACTGCCAACCAG-GGAGA-TAGAATTAC-AGCTTCAATGTACTCCACTG
* * *
18329003 TAACCACAGGGAGGTAAAAT-TCACCATCTTTGATCTGCCCCAC-ACTACTTAGGGAGACAAGAT
192 TAACCACAGGGAGGTAAAATCT-ACCATCTTCGATCTGCCCCACTAATACCTAGGGAGACAAGAT
*
18329066 TTGAAAT
256 CTGAAAT
* * *
18329073 CTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAAT
1 CTTCAATCTATTCCACTGCTGCCC-GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* ** * *
18329138 CACAGGGAGGTAAAAT-TCGCCATCTTTGATCTGCTCCACTACCGCTTAGGGAGACAAGATCTGA
65 CACAGGGAGGTAAAATCT-GCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGA
18329202 AATCTTCAATCT
129 AATCTTCAATCT
18329214 GCTCTACTGC
Statistics
Matches: 368, Mismatches: 29, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
262 6 0.02
263 281 0.76
264 64 0.17
265 17 0.05
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (262 bp):
CTTCAATCTATTCCACTGCTGCCCGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
ACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGATAAGATCTGAAA
TCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACAGCTTCAATGTACTCCACTGTAAC
CACAGGGAGGTAAAATCTACCATCTTCGATCTGCCCCACTAATACCTAGGGAGACAAGATCTGAA
AT
Found at i:18330537 original size:15 final size:15
Alignment explanation
Indices: 18330503--18330535 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
18330493 TACTTTTTCA
18330503 TTTTCGCTTTTCATT
1 TTTTCGCTTTTCATT
*
18330518 TTTTCG-TTTTTATT
1 TTTTCGCTTTTCATT
18330532 TTTT
1 TTTT
18330536 TCACATCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.06, C:0.12, G:0.06, T:0.76
Consensus pattern (15 bp):
TTTTCGCTTTTCATT
Found at i:18335850 original size:3 final size:3
Alignment explanation
Indices: 18335842--18335890 Score: 57
Period size: 3 Copynumber: 16.3 Consensus size: 3
18335832 TAAGTATTGA
*
18335842 AAT AAT AAT AAT AAC AAT AAT AAT AATT AAT -AT AAT AA- AATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AA-T AAT
18335887 AAT A
1 AAT A
18335891 TAAGAGAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
2 4 0.10
3 31 0.77
4 5 0.12
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:18338367 original size:20 final size:20
Alignment explanation
Indices: 18338338--18338380 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
18338328 AAAATAAACA
* **
18338338 TATAATTATTCATTTAATAT
1 TATAACTATTCAAATAATAT
18338358 TATAACTATTCAAATAATAT
1 TATAACTATTCAAATAATAT
18338378 TAT
1 TAT
18338381 TTAAATAGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (20 bp):
TATAACTATTCAAATAATAT
Found at i:18341347 original size:42 final size:42
Alignment explanation
Indices: 18341300--18341379 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
18341290 AACCATACAC
18341300 TGGTTTTACTTCACCTTCTGGCTTTGGCTTGTAATCAGGGAT
1 TGGTTTTACTTCACCTTCTGGCTTTGGCTTGTAATCAGGGAT
* * *
18341342 TGGTTTTGCTTCTCCTTGTGGCTTTGGCTTGTAATCAG
1 TGGTTTTACTTCACCTTCTGGCTTTGGCTTGTAATCAG
18341380 TGCTTGGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.11, C:0.19, G:0.25, T:0.45
Consensus pattern (42 bp):
TGGTTTTACTTCACCTTCTGGCTTTGGCTTGTAATCAGGGAT
Found at i:18341392 original size:42 final size:42
Alignment explanation
Indices: 18341308--18341392 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
18341298 ACTGGTTTTA
*
18341308 CTTCACCTTCTGGCTTTGGCTTGTAATCAGGGATTGGTTTTG
1 CTTCACCTTCTGGCTTTGGCTTGTAATCAGGGATTGGATTTG
* * * *
18341350 CTTCTCCTTGTGGCTTTGGCTTGTAATCAGTGCTTGGATTTG
1 CTTCACCTTCTGGCTTTGGCTTGTAATCAGGGATTGGATTTG
18341392 C
1 C
18341393 ATCATATTGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.11, C:0.20, G:0.26, T:0.44
Consensus pattern (42 bp):
CTTCACCTTCTGGCTTTGGCTTGTAATCAGGGATTGGATTTG
Found at i:18342210 original size:13 final size:13
Alignment explanation
Indices: 18342194--18342237 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
18342184 TTACTAATAT
18342194 TAATATTTAATTA
1 TAATATTTAATTA
*
18342207 TAATAGTTAAATTAA
1 TAATA-TTTAATT-A
18342222 TTAATATTTAATTA
1 -TAATATTTAATTA
18342236 TA
1 TA
18342238 TTAAATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 7 0.27
14 7 0.27
15 7 0.27
16 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (13 bp):
TAATATTTAATTA
Found at i:18342232 original size:16 final size:15
Alignment explanation
Indices: 18342192--18342255 Score: 60
Period size: 15 Copynumber: 4.1 Consensus size: 15
18342182 TATTACTAAT
18342192 ATTAATATTTAATT-
1 ATTAATATTTAATTA
*
18342206 A-TAATAGTTAAATTA
1 ATTAATA-TTTAATTA
18342221 ATTAATATTTAATTA
1 ATTAATATTTAATTA
*
18342236 TATTAAATATATTTATTA
1 -ATT-AATAT-TTAATTA
18342254 AT
1 AT
18342256 AAGCACTAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
13 5 0.12
14 7 0.17
15 8 0.20
16 8 0.20
17 7 0.17
18 6 0.15
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
ATTAATATTTAATTA
Found at i:18342253 original size:29 final size:29
Alignment explanation
Indices: 18342191--18342256 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
18342181 ATATTACTAA
**
18342191 TATTAATATTTAATTATAATAGTTAAATT
1 TATTAATATTTAATTATAATAAATAAATT
* * *
18342220 AATTAATATTTAATTATATTAAATATATT
1 TATTAATATTTAATTATAATAAATAAATT
18342249 TATTAATA
1 TATTAATA
18342257 AGCACTAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (29 bp):
TATTAATATTTAATTATAATAAATAAATT
Found at i:18345054 original size:32 final size:33
Alignment explanation
Indices: 18345013--18345081 Score: 106
Period size: 32 Copynumber: 2.1 Consensus size: 33
18345003 CCGCTAAACC
*
18345013 TTTTGTCTAATTAT-TAATGTTAAA-TCTTAGTA
1 TTTTGTCTAATTATGT-ATGTTAAACTCTTACTA
18345045 TTTTGTCTAATTATGTATGTTAAACTCTTACTA
1 TTTTGTCTAATTATGTATGTTAAACTCTTACTA
18345078 TTTT
1 TTTT
18345082 TTTATCTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 22 0.65
33 12 0.35
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.55
Consensus pattern (33 bp):
TTTTGTCTAATTATGTATGTTAAACTCTTACTA
Found at i:18345351 original size:20 final size:20
Alignment explanation
Indices: 18345326--18345379 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
18345316 AAAATATCGG
*
18345326 TTTACCAATATTTATAAGGC
1 TTTACCAATATTTATAAGAC
* *
18345346 TTTACCAAAAATTTATAAGAT
1 TTTACC-AATATTTATAAGAC
*
18345367 TTTATCAATATTT
1 TTTACCAATATTT
18345380 TCAAATTTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44
Consensus pattern (20 bp):
TTTACCAATATTTATAAGAC
Found at i:18345536 original size:20 final size:20
Alignment explanation
Indices: 18345513--18345566 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
18345503 ATTTCTATCG
*
18345513 TTTTACCAATATTTATGAGA-
1 TTTTACCAATATTT-TGAAAT
* *
18345533 TTTTACCAAAATTTTTAAAT
1 TTTTACCAATATTTTGAAAT
18345553 TTTTACCAATATTT
1 TTTTACCAATATTT
18345567 CCTAATTTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 3 0.10
20 26 0.90
ACGTcount: A:0.35, C:0.11, G:0.04, T:0.50
Consensus pattern (20 bp):
TTTTACCAATATTTTGAAAT
Found at i:18345659 original size:20 final size:20
Alignment explanation
Indices: 18345626--18345730 Score: 66
Period size: 20 Copynumber: 5.1 Consensus size: 20
18345616 CTTTATCAAA
*
18345626 ATATCTAATAATTTACCAAT
1 ATATCTAACAATTTACCAAT
*
18345646 ATATCTAACGATTTACCAATTT
1 ATATCTAACAATTTACCAA--T
* * * * ***
18345668 TTTTTTTATTTTTTTACCAAT
1 ATATCTAACAAT-TTACCAAT
* * *
18345689 ATCTCTAACATTTTACCAAA
1 ATATCTAACAATTTACCAAT
*
18345709 ATATCTAACAATTTATCAAT
1 ATATCTAACAATTTACCAAT
18345729 AT
1 AT
18345731 TTATGAGACT
Statistics
Matches: 62, Mismatches: 20, Indels: 6
0.70 0.23 0.07
Matches are distributed among these distances:
20 42 0.68
21 7 0.11
22 6 0.10
23 7 0.11
ACGTcount: A:0.37, C:0.16, G:0.01, T:0.46
Consensus pattern (20 bp):
ATATCTAACAATTTACCAAT
Found at i:18348676 original size:20 final size:20
Alignment explanation
Indices: 18348651--18348814 Score: 95
Period size: 20 Copynumber: 8.2 Consensus size: 20
18348641 ATATTATCAA
18348651 TTACCAAAATTTCTAAAGAT
1 TTACCAAAATTTCTAAAGAT
** *
18348671 TTACCATTATTTCTAAGGA-
1 TTACCAAAATTTCTAAAGAT
* *
18348690 TTCCCTAAAATATCTAACA-AT
1 TTACC-AAAATTTCTAA-AGAT
* * * *
18348711 TTATCGAAATTTTTAAGGAT
1 TTACCAAAATTTCTAAAGAT
*
18348731 TTACCAAAATATT-TAACGAT
1 TTACCAAAAT-TTCTAAAGAT
* * *
18348751 TTACCAAATTTTCTATCA-TT
1 TTACCAAAATTTCTA-AAGAT
* * *
18348771 TTACCAATATATCTAACA-AC
1 TTACCAAAATTTCTAA-AGAT
*
18348791 TTACCAAAATTTCTAATGAT
1 TTACCAAAATTTCTAAAGAT
18348811 TTAC
1 TTAC
18348815 TGTAACATCT
Statistics
Matches: 104, Mismatches: 31, Indels: 18
0.68 0.20 0.12
Matches are distributed among these distances:
19 6 0.06
20 93 0.89
21 5 0.05
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (20 bp):
TTACCAAAATTTCTAAAGAT
Found at i:18348713 original size:40 final size:39
Alignment explanation
Indices: 18348651--18348814 Score: 136
Period size: 40 Copynumber: 4.1 Consensus size: 39
18348641 ATATTATCAA
* *
18348651 TTACCAAAATTTCTAA-AGATTTACCATTATTTCTAAGGA-
1 TTACCAAAATATCTAACA-ATTTACCA-AATTTCTAAGGAT
* * *
18348690 TTCCCTAAAATATCTAACAATTTATCGAAATTTTTAAGGAT
1 TTACC-AAAATATCTAACAATTTA-CCAAATTTCTAAGGAT
* * **
18348731 TTACCAAAATATTTAACGATTTACCAAATTTTCT-ATCATT
1 TTACCAAAATATCTAACAATTTACCAAA-TTTCTAAGGA-T
* * *
18348771 TTACCAATATATCTAACAACTTACCAAAATTTCTAATGAT
1 TTACCAAAATATCTAACAATTTACC-AAATTTCTAAGGAT
18348811 TTAC
1 TTAC
18348815 TGTAACATCT
Statistics
Matches: 100, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
39 10 0.10
40 77 0.77
41 13 0.13
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (39 bp):
TTACCAAAATATCTAACAATTTACCAAATTTCTAAGGAT
Found at i:18353710 original size:20 final size:20
Alignment explanation
Indices: 18353674--18353732 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
18353664 GGGGTGTTAC
*
18353674 ATTTACCAGAA-TATCTAACA
1 ATTTACCA-AATTTTCTAACA
*
18353694 ATTTACCAAATTTTCTATCA
1 ATTTACCAAATTTTCTAACA
*
18353714 TTTTACCAATATTTTCTAA
1 ATTTACCAA-ATTTTCTAA
18353733 GATTTTACTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 2 0.06
20 23 0.70
21 8 0.24
ACGTcount: A:0.37, C:0.19, G:0.02, T:0.42
Consensus pattern (20 bp):
ATTTACCAAATTTTCTAACA
Found at i:18353729 original size:21 final size:21
Alignment explanation
Indices: 18353687--18353748 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
18353677 TACCAGAATA
*
18353687 TCTAACAATTTACCAA-ATTT
1 TCTAACATTTTACCAATATTT
*
18353707 TCTATCATTTTACCAATATTT
1 TCTAACATTTTACCAATATTT
* *
18353728 TCTAAGATTTTACTAATATTT
1 TCTAACATTTTACCAATATTT
18353749 CCAAATTTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
20 14 0.39
21 22 0.61
ACGTcount: A:0.34, C:0.16, G:0.02, T:0.48
Consensus pattern (21 bp):
TCTAACATTTTACCAATATTT
Found at i:18353827 original size:20 final size:20
Alignment explanation
Indices: 18353784--18353833 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
18353774 GTCTTAACAA
* *
18353784 TTACCAAAATTTCTATGACT
1 TTACCAATATTTCTAAGACT
18353804 TTACCAATATTTCTAAGAAC-
1 TTACCAATATTTCTAAG-ACT
18353824 TTACCAATAT
1 TTACCAATAT
18353834 ATATCTAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 25 0.93
21 2 0.07
ACGTcount: A:0.38, C:0.20, G:0.04, T:0.38
Consensus pattern (20 bp):
TTACCAATATTTCTAAGACT
Found at i:18353979 original size:149 final size:150
Alignment explanation
Indices: 18353684--18353968 Score: 376
Period size: 149 Copynumber: 1.9 Consensus size: 150
18353674 ATTTACCAGA
* * * * *
18353684 ATATCTAACAATTTACCAAATTTTCTATCATTTTACCAATATTTTCTAAGATTTTACTAATATTT
1 ATATCTAACAATTTACAAAATTTTCTATCATTTTACCAATATTTTATAAGACTTCACCAATATTT
** * * *
18353749 CCAAATTTTCTAAATTCTACATCAAGTCTTAACAATTACCAAAATTTCTATGACTTTACCAATAT
66 CCAAATTTTCTAAACACCACATCAAGTCTTAACAAATACCAAAATTTCTATGACTTTACCAAAAT
*
18353814 TTCTAAGAACTTACCAATAT
131 ATCTAAGAACTTACCAATAT
* * * *
18353834 ATATCTAACGATTTATCAAAATTTT-TATCTTTTTATCAATA-TTTATGAGACTTCACCAATATT
1 ATATCTAACAATTTA-CAAAATTTTCTATCATTTTACCAATATTTTATAAGACTTCACCAATATT
* ** *
18353897 TTCAAATTTTCTAAACACCATGTGAAGTCTTAACAAATACCAAAATTTCTATGACTTTACCAAAA
65 TCCAAATTTTCTAAACACCACATCAAGTCTTAACAAATACCAAAATTTCTATGACTTTACCAAAA
18353962 TATCTAA
130 TATCTAA
18353969 TGATTTACCA
Statistics
Matches: 115, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
149 79 0.69
150 28 0.24
151 8 0.07
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.40
Consensus pattern (150 bp):
ATATCTAACAATTTACAAAATTTTCTATCATTTTACCAATATTTTATAAGACTTCACCAATATTT
CCAAATTTTCTAAACACCACATCAAGTCTTAACAAATACCAAAATTTCTATGACTTTACCAAAAT
ATCTAAGAACTTACCAATAT
Found at i:18354036 original size:80 final size:80
Alignment explanation
Indices: 18353934--18354124 Score: 224
Period size: 80 Copynumber: 2.4 Consensus size: 80
18353924 TCTTAACAAA
* * ** * * *
18353934 TACCAAAATTTCTATGACTTTACCAAAATATCTAATGATTTACCAAAATTTCTAAGGACTTACCA
1 TACCAATATTTCTATGAATTTACCAAAATATCTAACAATATACCAAAATTTCCAACGACTTACCA
18353999 ATAAATCT-AACAATT
66 ATAAATCTGAA-AATT
* * *
18354014 TACCAATATTTCTGA-GAATTTACCAAAATATCTAACAATATATCAAAATTTCCATCGATTTACC
1 TACCAATATTTCT-ATGAATTTACCAAAATATCTAACAATATACCAAAATTTCCAACGACTTACC
** * *
18354078 AATATTTTTGAAACTT
65 AATAAATCTGAAAATT
18354094 TACCAATATTTCTATGAATTTACCAAAATAT
1 TACCAATATTTCTATGAATTTACCAAAATAT
18354125 TTGGCGATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
79 1 0.01
80 90 0.96
81 3 0.03
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (80 bp):
TACCAATATTTCTATGAATTTACCAAAATATCTAACAATATACCAAAATTTCCAACGACTTACCA
ATAAATCTGAAAATT
Found at i:18354044 original size:149 final size:149
Alignment explanation
Indices: 18353684--18354039 Score: 360
Period size: 149 Copynumber: 2.4 Consensus size: 149
18353674 ATTTACCAGA
* * * * * * * * *
18353684 ATATCTAACAATTTACCAAATTTTCTATCATTTTACCAATATTTTCTAAGATTTTACTAATATTT
1 ATATCTAACGACTTACCAAAATATCTAACAATTTACCAATA-TTTCTGAGAATTTACCAATATTT
** * * *
18353749 CCAAATTTTCTAAATTCTACATCAAGTCTTAACAATTACCAAAATTTCTATGACTTTACCAATAT
65 CCAAATTTTCTAAACACCACATCAAGTCTTAACAAATACCAAAATTTCTATGACTTTACCAAAAT
*
18353814 TTCTAAGAACTTACCAATAT
130 ATCTAAGAACTTACCAATAT
* * * * * ** * * * * *
18353834 ATATCTAACGATTTATCAAAATTTTTATCTTTTTATCAATATTTATGAGACTTCACCAATATTTT
1 ATATCTAACGACTTACCAAAATATCTAACAATTTACCAATATTTCTGAGAATTTACCAATATTTC
** *
18353899 CAAATTTTCTAAACACCATGTGAAGTCTTAACAAATACCAAAATTTCTATGACTTTACCAAAATA
66 CAAATTTTCTAAACACCACATCAAGTCTTAACAAATACCAAAATTTCTATGACTTTACCAAAATA
*
18353964 TCTAATG-ATTTACCAA-A-
131 TCTAA-GAACTTACCAATAT
* *
18353981 ATTTCTAAGGACTTACCAATAA-ATCTAACAATTTACCAATATTTCTGAGAATTTACCAA
1 ATATCTAACGACTTACCAA-AATATCTAACAATTTACCAATATTTCTGAGAATTTACCAA
18354040 AATATCTAAC
Statistics
Matches: 169, Mismatches: 35, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
147 43 0.25
148 3 0.02
149 87 0.51
150 36 0.21
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.39
Consensus pattern (149 bp):
ATATCTAACGACTTACCAAAATATCTAACAATTTACCAATATTTCTGAGAATTTACCAATATTTC
CAAATTTTCTAAACACCACATCAAGTCTTAACAAATACCAAAATTTCTATGACTTTACCAAAATA
TCTAAGAACTTACCAATAT
Found at i:18354136 original size:40 final size:40
Alignment explanation
Indices: 18353934--18354124 Score: 183
Period size: 40 Copynumber: 4.8 Consensus size: 40
18353924 TCTTAACAAA
* **
18353934 TACCAAAATTTCTATGACTTTACCAAAATATCTAATGATT
1 TACCAAAATTTCTATGAATTTACCAAAATATCTAACAATT
* * *
18353974 TACCAAAATTTCTAAGGACTTACCAATAA-ATCTAACAATT
1 TACCAAAATTTCTATGAATTTACCAA-AATATCTAACAATT
* *
18354014 TACCAATATTTCTGA-GAATTTACCAAAATATCTAACAATA
1 TACCAAAATTTCT-ATGAATTTACCAAAATATCTAACAATT
* * * * * *
18354054 TATCAAAATTTCCATCG-ATTTACCAATATTTTTGAA-ACTT
1 TACCAAAATTTCTAT-GAATTTACCAAAATATCT-AACAATT
*
18354094 TACCAATATTTCTATGAATTTACCAAAATAT
1 TACCAAAATTTCTATGAATTTACCAAAATAT
18354125 TTGGCGATTT
Statistics
Matches: 121, Mismatches: 23, Indels: 14
0.77 0.15 0.09
Matches are distributed among these distances:
39 4 0.03
40 111 0.92
41 6 0.05
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (40 bp):
TACCAAAATTTCTATGAATTTACCAAAATATCTAACAATT
Found at i:18354249 original size:20 final size:20
Alignment explanation
Indices: 18353934--18354288 Score: 156
Period size: 20 Copynumber: 17.8 Consensus size: 20
18353924 TCTTAACAAA
18353934 TACCAAAATTTCT-ATGACTT
1 TACCAAAATTTCTAATGA-TT
*
18353954 TACCAAAATATCTAATGATT
1 TACCAAAATTTCTAATGATT
* *
18353974 TACCAAAATTTCTAAGGACT
1 TACCAAAATTTCTAATGATT
* **
18353994 TACCAATAA-ATCTAACAATT
1 TACCAA-AATTTCTAATGATT
* *
18354014 TACCAATATTTCTGA-GAATT
1 TACCAAAATTTCTAATG-ATT
* ** *
18354034 TACCAAAATATCTAACAATA
1 TACCAAAATTTCTAATGATT
* *
18354054 TATCAAAATTTC-CATCGATT
1 TACCAAAATTTCTAAT-GATT
* *
18354074 TACCAATATTTTTGAA--ACTT
1 TACCAAAATTTCT-AATGA-TT
*
18354094 TACCAATATTTCT-ATGAATT
1 TACCAAAATTTCTAATG-ATT
***
18354114 TACCAAAATATT-TGGCGATT
1 TACCAAAAT-TTCTAATGATT
* *
18354134 TA-CAAATATATCTAA-CAGTT
1 TACCAAA-ATTTCTAATGA-TT
* * *
18354154 TATCAAAATTTATAAGGATT
1 TACCAAAATTTCTAATGATT
* * * ** *
18354174 TACCGATATGTCTAACAAAT
1 TACCAAAATTTCTAATGATT
* * * *
18354194 TATCAAAATTTTTAAGGTTT
1 TACCAAAATTTCTAATGATT
* **
18354214 TACCGAAACATCTAATGATT
1 TACCAAAATTTCTAATGATT
*
18354234 TACCAAAATTTTTAATG-TT
1 TACCAAAATTTCTAATGATT
* * *
18354253 TCACAAAAATATCTAACGATT
1 T-ACCAAAATTTCTAATGATT
18354274 TACCAAAATTTCTAA
1 TACCAAAATTTCTAA
18354289 AATTTTACAA
Statistics
Matches: 242, Mismatches: 72, Indels: 42
0.68 0.20 0.12
Matches are distributed among these distances:
18 1 0.00
19 12 0.05
20 210 0.87
21 18 0.07
22 1 0.00
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.37
Consensus pattern (20 bp):
TACCAAAATTTCTAATGATT
Found at i:18354295 original size:20 final size:20
Alignment explanation
Indices: 18354232--18354296 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
18354222 CATCTAATGA
* **
18354232 TTTACCAAAATTTTTAATGT
1 TTTACCAAAATTTCTAAAAT
* * * *
18354252 TTCACAAAAATATCTAACGA-
1 TTTACCAAAATTTCTAA-AAT
18354272 TTTACCAAAATTTCTAAAAT
1 TTTACCAAAATTTCTAAAAT
18354292 TTTAC
1 TTTAC
18354297 AAATACTTCC
Statistics
Matches: 33, Mismatches: 10, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
19 1 0.03
20 32 0.97
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (20 bp):
TTTACCAAAATTTCTAAAAT
Found at i:18354407 original size:20 final size:20
Alignment explanation
Indices: 18354359--18354441 Score: 67
Period size: 20 Copynumber: 4.2 Consensus size: 20
18354349 TTTCTCTAAC
* * *
18354359 TTTACCAAAATATCCAATGA
1 TTTACCAATATATCTAAAGA
* *
18354379 CTTATCAATATATCTAAAGA
1 TTTACCAATATATCTAAAGA
* *
18354399 TTTACCAATATTTCTAAGGA
1 TTTACCAATATATCTAAAGA
* * * *
18354419 TTTATCAACATATTTGAAGA
1 TTTACCAATATATCTAAAGA
18354439 TTT
1 TTT
18354442 TACTAATATT
Statistics
Matches: 48, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (20 bp):
TTTACCAATATATCTAAAGA
Found at i:18354513 original size:21 final size:20
Alignment explanation
Indices: 18354487--18354606 Score: 82
Period size: 20 Copynumber: 6.0 Consensus size: 20
18354477 ATCTTAACAA
*
18354487 TTATCAATATTTCTAATGATT
1 TTATCAATATTTCT-ATGAAT
*
18354508 TTATC-ATAATTTGTATGAAT
1 TTATCAAT-ATTTCTATGAAT
* * * * *
18354528 TTACCCATATTTTTTTGGAT
1 TTATCAATATTTCTATGAAT
* * *
18354548 TTACCAA-ATTATCTAAGATT
1 TTATCAATATT-TCTATGAAT
*
18354568 TTATCAATATTTCTATCAAT
1 TTATCAATATTTCTATGAAT
* *
18354588 TTATCAATTTTTATATGAA
1 TTATCAATATTTCTATGAA
18354607 CTTACTAAAA
Statistics
Matches: 76, Mismatches: 19, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
19 3 0.04
20 58 0.76
21 15 0.20
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (20 bp):
TTATCAATATTTCTATGAAT
Found at i:18354676 original size:6 final size:6
Alignment explanation
Indices: 18354665--18354696 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
18354655 ACCTAAAACT
18354665 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TT
18354697 ATCAATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:18361825 original size:27 final size:26
Alignment explanation
Indices: 18361781--18361834 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
18361771 TCCTCTTTTC
18361781 TATTGTCCTAACAAACTTACTCGTATT
1 TATTGTCCTAACAAACTTACTC-TATT
* **
18361808 TATTGTCCTAGCGGACTTACTCTATT
1 TATTGTCCTAACAAACTTACTCTATT
18361834 T
1 T
18361835 CATGTTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.43
Consensus pattern (26 bp):
TATTGTCCTAACAAACTTACTCTATT
Found at i:18361893 original size:33 final size:33
Alignment explanation
Indices: 18361827--18361896 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 33
18361817 AGCGGACTTA
*
18361827 CTCTATTTCATGTTTAATGTCTCGACAGGCTAT
1 CTCTATTTCATGTTTAATGTCTCCACAGGCTAT
*
18361860 CTCTATTTCGTGTTTAATGT-TCCA-ATGGACTAT
1 CTCTATTTCATGTTTAATGTCTCCACA-GG-CTAT
18361893 CTCT
1 CTCT
18361897 CTATAGATGC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 1 0.03
32 5 0.15
33 27 0.82
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.44
Consensus pattern (33 bp):
CTCTATTTCATGTTTAATGTCTCCACAGGCTAT
Found at i:18366334 original size:44 final size:44
Alignment explanation
Indices: 18366247--18366353 Score: 182
Period size: 44 Copynumber: 2.5 Consensus size: 44
18366237 AGGGTACACC
*
18366247 CAACAACCCAAGTTTATC-T-TCTCATTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCTCTCATTTTTTAAATTCTTTTTT
*
18366289 CAACAACCCAAGATTATCTTCTCTCTTTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCTCTCATTTTTTAAATTCTTTTTT
18366333 CAACAACCCAAGATTATCTTC
1 CAACAACCCAAGATTATCTTC
18366354 CCATCCTTTT
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
42 17 0.28
43 1 0.02
44 43 0.70
ACGTcount: A:0.28, C:0.24, G:0.03, T:0.45
Consensus pattern (44 bp):
CAACAACCCAAGATTATCTTCTCTCATTTTTTAAATTCTTTTTT
Found at i:18366364 original size:44 final size:43
Alignment explanation
Indices: 18366247--18366365 Score: 179
Period size: 44 Copynumber: 2.7 Consensus size: 43
18366237 AGGGTACACC
*
18366247 CAACAACCCAAGTTTATCTTCTCAT-TTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCTCATCTTTTTAAATTCTTTTTT
18366289 CAACAACCCAAGATTATCTTCTC-TCTTTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCTCATC--TTTTTAAATTCTTTTTT
*
18366333 CAACAACCCAAGATTATCTTCCCATCCTTTTTA
1 CAACAACCCAAGATTATCTTCTCAT-CTTTTTA
18366366 GGCCGATTTT
Statistics
Matches: 70, Mismatches: 2, Indels: 8
0.88 0.03 0.10
Matches are distributed among these distances:
41 1 0.01
42 22 0.31
44 45 0.64
45 1 0.01
46 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.03, T:0.45
Consensus pattern (43 bp):
CAACAACCCAAGATTATCTTCTCATCTTTTTAAATTCTTTTTT
Found at i:18389076 original size:54 final size:55
Alignment explanation
Indices: 18388964--18389076 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 55
18388954 CACACAGGTT
* * * * *
18388964 TGTGTCTAGACCGTGTAACTCTTTGACTTGAGTCACGCGAGCTTATGTCAAGCTG
1 TGTGTCTAGACCATGTAACTCTTTGACTTGAGTCACACGAGCATATGCCAAGCCG
* * * * *
18389019 TGTG-CTAGACCATGTAACTCTTTGGCTTGAGTCACATGGGCATGTGCCAGGCCG
1 TGTGTCTAGACCATGTAACTCTTTGACTTGAGTCACACGAGCATATGCCAAGCCG
18389073 TGTG
1 TGTG
18389077 GGCCACACGA
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
54 44 0.92
55 4 0.08
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (55 bp):
TGTGTCTAGACCATGTAACTCTTTGACTTGAGTCACACGAGCATATGCCAAGCCG
Found at i:18389725 original size:22 final size:22
Alignment explanation
Indices: 18389696--18389752 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
18389686 GAATTTGCAT
18389696 CTGTATCTGATATGTTCTACATA
1 CTGTATCTGATATGTTCTACA-A
*
18389719 -TGTATCTGATGTGTTCTACAA
1 CTGTATCTGATATGTTCTACAA
*
18389740 CTGTATTTGATAT
1 CTGTATCTGATAT
18389753 CTTGTGTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 1 0.03
22 29 0.97
ACGTcount: A:0.25, C:0.14, G:0.16, T:0.46
Consensus pattern (22 bp):
CTGTATCTGATATGTTCTACAA
Found at i:18399092 original size:15 final size:15
Alignment explanation
Indices: 18399035--18399092 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
18399025 AATGGAACAT
*
18399035 AAAAATAAAAAATAA-
1 AAAAA-AAAAAAGAAG
*
18399050 AAAAATAAAAAGAAG
1 AAAAAAAAAAAGAAG
* * *
18399065 AAGAAGAAGAAGAAG
1 AAAAAAAAAAAGAAG
18399080 AAAAAAAAAAAGA
1 AAAAAAAAAAAGA
18399093 GCAACATAAG
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
14 7 0.21
15 27 0.79
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (15 bp):
AAAAAAAAAAAGAAG
Found at i:18403103 original size:35 final size:35
Alignment explanation
Indices: 18402966--18403104 Score: 163
Period size: 35 Copynumber: 4.0 Consensus size: 35
18402956 CTCCTCACAG
* ** *
18402966 GACTTGTATATCATTTTCATGGTGTCGCCCCGAAG
1 GACTTGTATATCATTTACACAGTGTCGCCCCGAAT
* *
18403001 GACTTGTATATCATTTACACAGTGTCGTCCCAAAT
1 GACTTGTATATCATTTACACAGTGTCGCCCCGAAT
* * **
18403036 GACTTGTATACCATTTACACAATGTCATCCCGAAT
1 GACTTGTATATCATTTACACAGTGTCGCCCCGAAT
*
18403071 TA-TCTGTATATCATTTACACAGTGTCGCCCCGAA
1 GACT-TGTATATCATTTACACAGTGTCGCCCCGAA
18403105 GGACCAATAG
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
34 1 0.01
35 87 0.99
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (35 bp):
GACTTGTATATCATTTACACAGTGTCGCCCCGAAT
Found at i:18406346 original size:30 final size:30
Alignment explanation
Indices: 18406312--18406579 Score: 266
Period size: 30 Copynumber: 8.9 Consensus size: 30
18406302 TAACTCGACG
* * **
18406312 ATAATGTTAGCTTGTATGAGCAATTTTATC
1 ATAATGTCAGCTTGTGTGAGCAATCCTATC
* * * *
18406342 ATAATGCCAACTTGTGTGAGCAATCCAATT
1 ATAATGTCAGCTTGTGTGAGCAATCCTATC
18406372 ATAATGTCAGCTTGTGTGAGCAATCCTATC
1 ATAATGTCAGCTTGTGTGAGCAATCCTATC
* *
18406402 ATAATGTCAGCTTGTGTGAGCAACCCGATC
1 ATAATGTCAGCTTGTGTGAGCAATCCTATC
* * * * *
18406432 ATAATGTCAACTTATGTGAACAATCCAATT
1 ATAATGTCAGCTTGTGTGAGCAATCCTATC
* * * * *
18406462 ATAATGTTAGGTTGTGTGAGCAATTCGATT
1 ATAATGTCAGCTTGTGTGAGCAATCCTATC
* * * *
18406492 ATAATGTCAACTTGTGTGAACAATCCAATT
1 ATAATGTCAGCTTGTGTGAGCAATCCTATC
* * * *
18406522 ATAATGTCAGGTTGCGTGAGCAATCCGATT
1 ATAATGTCAGCTTGTGTGAGCAATCCTATC
* *
18406552 ATAATGTCAACTTGTGTGAGCAACCCTA
1 ATAATGTCAGCTTGTGTGAGCAATCCTA
18406580 AAATGCTACC
Statistics
Matches: 195, Mismatches: 43, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 195 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (30 bp):
ATAATGTCAGCTTGTGTGAGCAATCCTATC
Done.