Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 101 of 203
Found at i:31930282 original size:15 final size:14
Alignment explanation
Indices: 31930251--31930281 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
31930241 AATTTTGGAC
*
31930251 TTTGTTTTATTATT
1 TTTGGTTTATTATT
31930265 TTTGGTTTATTATT
1 TTTGGTTTATTATT
31930279 TTT
1 TTT
31930282 TTATGAGCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.00, G:0.10, T:0.77
Consensus pattern (14 bp):
TTTGGTTTATTATT
Found at i:31950754 original size:13 final size:14
Alignment explanation
Indices: 31950736--31950773 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
31950726 TTGTTTTACT
*
31950736 GAAAATGACTTC-G
1 GAAAATGACTTCTA
*
31950749 GAAAATGATTTCTA
1 GAAAATGACTTCTA
31950763 GAAAATGACTT
1 GAAAATGACTT
31950774 ACTTTTCTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.29
Consensus pattern (14 bp):
GAAAATGACTTCTA
Found at i:31952882 original size:20 final size:20
Alignment explanation
Indices: 31952857--31952913 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
31952847 AAAATTACAA
31952857 AAAATT-TAATAAATAAAAAT
1 AAAATTCTAA-AAATAAAAAT
* *
31952877 AAAATTCTAAAACTAAAACT
1 AAAATTCTAAAAATAAAAAT
31952897 AAAA--CTAAAATATAAAA
1 AAAATTCTAAAA-ATAAAA
31952914 GTCTAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
18 6 0.19
19 5 0.16
20 18 0.56
21 3 0.09
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (20 bp):
AAAATTCTAAAAATAAAAAT
Found at i:31952957 original size:9 final size:9
Alignment explanation
Indices: 31952943--31953020 Score: 102
Period size: 9 Copynumber: 8.7 Consensus size: 9
31952933 TATGTATGAT
*
31952943 TTAATTAGG
1 TTAATTCGG
31952952 TTAATTCGG
1 TTAATTCGG
*
31952961 GTAATTCGG
1 TTAATTCGG
*
31952970 GTAATTCGG
1 TTAATTCGG
*
31952979 TTAATTTGG
1 TTAATTCGG
*
31952988 GTAATTCGG
1 TTAATTCGG
*
31952997 TTAATTTGG
1 TTAATTCGG
31953006 TTAATTCGG
1 TTAATTCGG
31953015 TTAATT
1 TTAATT
31953021 TTTAACCAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 60 1.00
ACGTcount: A:0.24, C:0.06, G:0.24, T:0.45
Consensus pattern (9 bp):
TTAATTCGG
Found at i:31952974 original size:18 final size:18
Alignment explanation
Indices: 31952943--31953021 Score: 113
Period size: 18 Copynumber: 4.4 Consensus size: 18
31952933 TATGTATGAT
* *
31952943 TTAATTAGGTTAATTCGG
1 TTAATTTGGGTAATTCGG
* *
31952961 GTAATTCGGGTAATTCGG
1 TTAATTTGGGTAATTCGG
31952979 TTAATTTGGGTAATTCGG
1 TTAATTTGGGTAATTCGG
*
31952997 TTAATTTGGTTAATTCGG
1 TTAATTTGGGTAATTCGG
31953015 TTAATTT
1 TTAATTT
31953022 TTAACCAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 55 1.00
ACGTcount: A:0.24, C:0.06, G:0.24, T:0.46
Consensus pattern (18 bp):
TTAATTTGGGTAATTCGG
Found at i:31953122 original size:29 final size:29
Alignment explanation
Indices: 31953085--31953164 Score: 151
Period size: 29 Copynumber: 2.8 Consensus size: 29
31953075 CGAATTAACC
31953085 GAAAAAATTTCGGTTCGGTTAATTTTTTT
1 GAAAAAATTTCGGTTCGGTTAATTTTTTT
31953114 GAAAAAATTTCGGTTCGGTTAATTTTTTT
1 GAAAAAATTTCGGTTCGGTTAATTTTTTT
*
31953143 GAAAAAATTTCGGTTCGATTAA
1 GAAAAAATTTCGGTTCGGTTAA
31953165 CGGTTAAAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.44
Consensus pattern (29 bp):
GAAAAAATTTCGGTTCGGTTAATTTTTTT
Found at i:31957310 original size:18 final size:18
Alignment explanation
Indices: 31957283--31957320 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
31957273 AAATTTCCAT
*
31957283 AAAAGCAAAAGAAAAGTAA
1 AAAAGCAAAAAAAAAG-AA
31957302 AAAAG-AAAAAAAAAGAA
1 AAAAGCAAAAAAAAAGAA
31957319 AA
1 AA
31957321 GAAATTGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 9 0.50
19 5 0.28
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (18 bp):
AAAAGCAAAAAAAAAGAA
Found at i:31958672 original size:37 final size:37
Alignment explanation
Indices: 31958631--31958704 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
31958621 TACTTAGCAC
31958631 TACAATTACCAGACAAGTTTACCTACAACCACAGGCA
1 TACAATTACCAGACAAGTTTACCTACAACCACAGGCA
*
31958668 TACAATTACCAGACAAGTTTACCTACAACCATAGGCA
1 TACAATTACCAGACAAGTTTACCTACAACCACAGGCA
31958705 ATGGGAATGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.41, C:0.28, G:0.11, T:0.20
Consensus pattern (37 bp):
TACAATTACCAGACAAGTTTACCTACAACCACAGGCA
Found at i:31976512 original size:2 final size:2
Alignment explanation
Indices: 31976505--31976529 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
31976495 GCTTCAAGTT
31976505 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
31976530 GGTCATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:31979524 original size:18 final size:17
Alignment explanation
Indices: 31979496--31979530 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
31979486 ATTATTAATA
*
31979496 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
31979513 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
31979531 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:31979623 original size:120 final size:120
Alignment explanation
Indices: 31979481--31979784 Score: 547
Period size: 120 Copynumber: 2.5 Consensus size: 120
31979471 TAGTAAATTN
* *
31979481 TATTAATTATTAATAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATT
1 TATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATT
*
31979546 TCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAA
66 TCAAATTATCATTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAA
31979601 TATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATT
1 TATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATT
*
31979666 TCAAATTTTCATTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAA
66 TCAAATTATCATTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAA
*
31979721 TATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATT-ATTAT
1 TATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAT-ATTAATTAT
31979785 GTTTAAATAT
Statistics
Matches: 178, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
120 175 0.98
121 3 0.02
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.51
Consensus pattern (120 bp):
TATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATT
TCAAATTATCATTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAA
Found at i:31979644 original size:18 final size:17
Alignment explanation
Indices: 31979616--31979650 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
31979606 ATTATTAAGA
*
31979616 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
31979633 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
31979651 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:31980016 original size:45 final size:43
Alignment explanation
Indices: 31979916--31980025 Score: 122
Period size: 45 Copynumber: 2.6 Consensus size: 43
31979906 TTTTCCATTA
31979916 TGCTATTACACCTCTATTC----CATTCAACCAAACATAAGAT
1 TGCTATTACACCTCTATTCATTACATTCAACCAAACATAAGAT
* * *
31979955 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGT-TGATT
1 TGCTATTACACCTCTATT-CATTACATTCAACCAAACA-TAAGA-T
31980000 TGCTATTACACCTCTATTTCATTACA
1 TGCTATTACACCTCTA-TTCATTACA
31980026 CCTCTATTCC
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 23 0.40
46 2 0.03
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.35
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCATTACATTCAACCAAACATAAGAT
Found at i:31980025 original size:16 final size:16
Alignment explanation
Indices: 31980004--31980057 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
31979994 TTGATTTGCT
*
31980004 ATTACACCTCTATTTC
1 ATTACACCTCTATTCC
31980020 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
31980036 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
*
31980052 AATACA
1 ATTACA
31980058 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.31, C:0.33, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:31980683 original size:3 final size:3
Alignment explanation
Indices: 31980675--31980717 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
31980665 AAAAATCTCA
31980675 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
31980718 GCATTTCCTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:31986669 original size:23 final size:22
Alignment explanation
Indices: 31986587--31986705 Score: 121
Period size: 23 Copynumber: 5.2 Consensus size: 22
31986577 GGGTGTTACA
* *
31986587 AAATATGCCACAAGGGCTTCAC
1 AAATATGCCACAAAGGCATCAC
* *
31986609 AAAATACGCCACGAAGGCATCAC
1 -AAATATGCCACAAAGGCATCAC
**
31986632 ATAATACACCACAAAGGCATCAC
1 A-AATATGCCACAAAGGCATCAC
* *
31986655 AACATATGCCACAAATGCATCAT
1 AA-ATATGCCACAAAGGCATCAC
31986678 AGAATATGCCACAAAAGGCATCAC
1 A-AATATGCCAC-AAAGGCATCAC
31986702 AAAT
1 AAAT
31986706 TATATCTTAT
Statistics
Matches: 80, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
22 2 0.03
23 67 0.84
24 11 0.14
ACGTcount: A:0.45, C:0.27, G:0.13, T:0.15
Consensus pattern (22 bp):
AAATATGCCACAAAGGCATCAC
Found at i:31990124 original size:5 final size:5
Alignment explanation
Indices: 31990114--31990162 Score: 64
Period size: 5 Copynumber: 10.0 Consensus size: 5
31990104 AAATGCATAC
** *
31990114 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA GGAAC TAAAA T-AAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
31990163 ACTAAAAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
4 4 0.11
5 33 0.89
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (5 bp):
TAAAA
Found at i:31993368 original size:28 final size:28
Alignment explanation
Indices: 31993319--31993383 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
31993309 CTCTACTCAT
*
31993319 AAACTAAAAGAACCTATTAGAATCAAAC
1 AAACTAAAAGAACCTATCAGAATCAAAC
* *
31993347 AAACTAAAATAACTTATCAGAATCAAAC
1 AAACTAAAAGAACCTATCAGAATCAAAC
*
31993375 AAACGAAAA
1 AAACTAAAA
31993384 ATTAGAATGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.60, C:0.17, G:0.06, T:0.17
Consensus pattern (28 bp):
AAACTAAAAGAACCTATCAGAATCAAAC
Found at i:32007240 original size:30 final size:30
Alignment explanation
Indices: 32007200--32007390 Score: 265
Period size: 30 Copynumber: 6.4 Consensus size: 30
32007190 TTCCATACAA
* *
32007200 GCTGGACACACGTCCGTGTGAGCTACACGG
1 GCTGGCCACACGTCCGTGTGAGCCACACGG
* *
32007230 GCTGGCCACACGTCTGTGTAAGCCACACGG
1 GCTGGCCACACGTCCGTGTGAGCCACACGG
* * *
32007260 GCTGGCCATATGTCTGTGTGAGCCACACGG
1 GCTGGCCACACGTCCGTGTGAGCCACACGG
* * *
32007290 GCTGGCCATATGTCCGTGTGAGCAACACGG
1 GCTGGCCACACGTCCGTGTGAGCCACACGG
*
32007320 GCTGGCCACACGTCTGTGTGAGCCACACGG
1 GCTGGCCACACGTCCGTGTGAGCCACACGG
* *
32007350 GCTGGCCACACGTCCGTGTGAGCCATACGA
1 GCTGGCCACACGTCCGTGTGAGCCACACGG
32007380 GCTGGCCACAC
1 GCTGGCCACAC
32007391 TCCCATGCGC
Statistics
Matches: 145, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 145 1.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (30 bp):
GCTGGCCACACGTCCGTGTGAGCCACACGG
Found at i:32008745 original size:70 final size:70
Alignment explanation
Indices: 32008632--32008771 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
32008622 GTGGTACATT
32008632 TTTAATGTAACCCGTGCTAGCTAAATATTCATATATGTTTTCACTATTTACTTATATGTGTTCCT
1 TTTAATGTAACCCGTGCTAGCTAAATATTCATATATGTTTTCACTATTTACTTATATGTGTTCCT
32008697 TCAAA
66 TCAAA
32008702 TTTAATGTAACCCGTGCTAGCTAAATATTCATATATGTTTTCACTATTTACTTATATGTGTTCCT
1 TTTAATGTAACCCGTGCTAGCTAAATATTCATATATGTTTTCACTATTTACTTATATGTGTTCCT
32008767 TCAAA
66 TCAAA
32008772 GCTGTCTACT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.29, C:0.17, G:0.10, T:0.44
Consensus pattern (70 bp):
TTTAATGTAACCCGTGCTAGCTAAATATTCATATATGTTTTCACTATTTACTTATATGTGTTCCT
TCAAA
Found at i:32013991 original size:10 final size:10
Alignment explanation
Indices: 32013934--32013991 Score: 55
Period size: 10 Copynumber: 5.5 Consensus size: 10
32013924 AATCGACATG
32013934 AAATATAAAAT
1 AAATA-AAAAT
*
32013945 AAACAAAAAT
1 AAATAAAAAT
32013955 AAATAAAAA-
1 AAATAAAAAT
32013964 ACAATACCAAAAT
1 A-AATA--AAAAT
32013977 AAATAAAAAT
1 AAATAAAAAT
*
32013987 TAATA
1 AAATA
32013992 GTAAAAAGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
9 1 0.03
10 26 0.65
11 4 0.10
12 8 0.20
13 1 0.03
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.19
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:32014388 original size:29 final size:28
Alignment explanation
Indices: 32014356--32014425 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 28
32014346 ACTAAAAAGA
*
32014356 AAAAAAGAAAAATAAGAAGAATATATAAT
1 AAAAAAGAAAAATAAGAA-AATAAATAAT
*
32014385 AAAAATA-AATAAATAATAAAATAAATAAT
1 AAAAA-AGAA-AAATAAGAAAATAAATAAT
32014414 AAAAAATGAAAA
1 AAAAAA-GAAAA
32014426 GGGCAAGGGT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
28 1 0.03
29 23 0.66
30 11 0.31
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.19
Consensus pattern (28 bp):
AAAAAAGAAAAATAAGAAAATAAATAAT
Found at i:32014400 original size:17 final size:16
Alignment explanation
Indices: 32014375--32014420 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
32014365 AAATAAGAAG
*
32014375 AATATATAATAAAAATA
1 AATAAATAAT-AAAATA
32014392 AATAAATAATAAAATA
1 AATAAATAATAAAATA
32014408 AAT-AATAA-AAAAT
1 AATAAATAATAAAAT
32014421 GAAAAGGGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 5 0.18
15 5 0.18
16 9 0.32
17 9 0.32
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AATAAATAATAAAATA
Found at i:32014408 original size:12 final size:12
Alignment explanation
Indices: 32014382--32014417 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
32014372 AAGAATATAT
32014382 AATAAA-AAT-A
1 AATAAATAATAA
32014392 AATAAATAATAA
1 AATAAATAATAA
32014404 AATAAATAATAA
1 AATAAATAATAA
32014416 AA
1 AA
32014418 AATGAAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 6 0.25
11 3 0.12
12 15 0.62
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (12 bp):
AATAAATAATAA
Found at i:32016267 original size:36 final size:36
Alignment explanation
Indices: 32016220--32016291 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
32016210 GAGAGTAAGA
32016220 ACAATTGACTCTAGGTTGATTAATAGAAATCTCTTT
1 ACAATTGACTCTAGGTTGATTAATAGAAATCTCTTT
*
32016256 ACAATTGACTCTAGGTTGATTAATTGAAATCTCTTT
1 ACAATTGACTCTAGGTTGATTAATAGAAATCTCTTT
32016292 TTAATTAAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (36 bp):
ACAATTGACTCTAGGTTGATTAATAGAAATCTCTTT
Found at i:32017749 original size:16 final size:16
Alignment explanation
Indices: 32017719--32017755 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
32017709 TATCAATTTT
32017719 ATTATATTTTGTAATA
1 ATTATATTTTGTAATA
32017735 ATTA-ATTTTGATAATA
1 ATTATATTTTG-TAATA
32017751 ATTAT
1 ATTAT
32017756 TTAAATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (16 bp):
ATTATATTTTGTAATA
Found at i:32017757 original size:15 final size:14
Alignment explanation
Indices: 32017723--32017757 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
32017713 AATTTTATTA
32017723 TATTTTGTAATAAT
1 TATTTTGTAATAAT
32017737 TAATTTTGATAATAAT
1 T-ATTTTG-TAATAAT
32017753 TATTT
1 TATTT
32017758 AAATATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.05
15 10 0.53
16 8 0.42
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (14 bp):
TATTTTGTAATAAT
Found at i:32031421 original size:18 final size:17
Alignment explanation
Indices: 32031379--32031426 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
32031369 TGTCGTTCGT
32031379 TTTCAAAACATTATTCA
1 TTTCAAAACATTATTCA
* *
32031396 TTTACAAATCGTTATTCAA
1 TTT-CAAAACATTATTC-A
32031415 TTTCAAAACATT
1 TTTCAAAACATT
32031427 TTTTTATTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 3 0.12
18 18 0.72
19 4 0.16
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.42
Consensus pattern (17 bp):
TTTCAAAACATTATTCA
Found at i:32037520 original size:27 final size:27
Alignment explanation
Indices: 32037459--32037523 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
32037449 ACCCTAAAAT
32037459 AGGTAAAATGACCAAAATACACCCATA
1 AGGTAAAATGACCAAAATACACCCATA
* * * *
32037486 AAGCAAAATGACCGAAATACCCCCATA
1 AGGTAAAATGACCAAAATACACCCATA
*
32037513 GGGTAAAATGA
1 AGGTAAAATGA
32037524 TTGTTATGGC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.49, C:0.22, G:0.15, T:0.14
Consensus pattern (27 bp):
AGGTAAAATGACCAAAATACACCCATA
Found at i:32040824 original size:27 final size:27
Alignment explanation
Indices: 32040805--32040937 Score: 187
Period size: 27 Copynumber: 5.0 Consensus size: 27
32040795 TAAAAAGATT
*
32040805 GAAATACCCCCATAGGGT-AAATGGCC
1 GAAATACCCCCATAGGGTAAAATGACC
** *
32040831 GAAATACCCTAATAAGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACC
*
32040858 AAAATACCCCCATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACC
* *
32040885 AAAATACACCCATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACC
*
32040912 GAAATACCCCTATAGGGTAAAATGAC
1 GAAATACCCCCATAGGGTAAAATGAC
32040938 TGTTATACCC
Statistics
Matches: 94, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 15 0.16
27 79 0.84
ACGTcount: A:0.44, C:0.23, G:0.17, T:0.17
Consensus pattern (27 bp):
GAAATACCCCCATAGGGTAAAATGACC
Found at i:32051932 original size:23 final size:23
Alignment explanation
Indices: 32051905--32051951 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
32051895 GGATTTGGGG
32051905 AGGTTGTTATTGTGGGGAGATAT
1 AGGTTGTTATTGTGGGGAGATAT
32051928 AGGTTGTTATTGTGGGGAGATAT
1 AGGTTGTTATTGTGGGGAGATAT
32051951 A
1 A
32051952 TATCATCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.23, C:0.00, G:0.38, T:0.38
Consensus pattern (23 bp):
AGGTTGTTATTGTGGGGAGATAT
Found at i:32052624 original size:27 final size:27
Alignment explanation
Indices: 32052610--32053158 Score: 670
Period size: 27 Copynumber: 20.3 Consensus size: 27
32052600 CCCTATAAGA
32052610 TAAAATGACCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * *
32052637 TAAAATGATCGAAATACACTCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * ** *
32052664 TAAAATAACCAAAATACCCTTATATGG
1 TAAAATGACCGAAATACCCCCATAGGG
***
32052691 TAAAATGACCGAAATACCCCCATATCA
1 TAAAATGACCGAAATACCCCCATAGGG
* * *
32052718 TAGAATTACCAAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
*
32052745 TAAAATGATCGAAATACCCCCTATAGGG
1 TAAAATGACCGAAATACCCCC-ATAGGG
32052773 TAAAATGACC-AAAGTACCCCCATAGGG
1 TAAAATGACCGAAA-TACCCCCATAGGG
* *
32052800 TAGAATGATCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * *
32052827 TAGAATGACTGAAATACCCCAATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
*
32052854 TAAAATGATCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
*
32052881 TAAAATGATCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * *
32052908 TAAAATGATCGATATACCCCTATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* *
32052935 TAAAATAACCAAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * * *
32052962 TAGAATAATCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
*
32052989 TAAAATGACCGAAATACCCCTATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* *
32053016 TAAAATAACCAAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * * **
32053043 TAGAATAACTGAAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* *
32053070 TAAAAT-AGCCGAAATACCCCTATAAGG
1 TAAAATGA-CCGAAATACCCCCATAGGG
*
32053097 TAAAATGATCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
*
32053124 TAAAATGATCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
32053151 TAAAATGA
1 TAAAATGA
32053159 TTGTTATACC
Statistics
Matches: 451, Mismatches: 66, Indels: 10
0.86 0.13 0.02
Matches are distributed among these distances:
26 1 0.00
27 424 0.94
28 26 0.06
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCCATAGGG
Found at i:32053185 original size:81 final size:81
Alignment explanation
Indices: 32052585--32053158 Score: 749
Period size: 81 Copynumber: 7.1 Consensus size: 81
32052575 AGAGGTTGAT
* * * * * *
32052585 AAATAACCCAAATAACCCTATAAGATAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAA
1 AAATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAGAATGATCGAA
* *
32052650 ATACACTCATAGGGTA
66 ATACCCCCATAGGGTA
* * * * *** * * *
32052666 AAATAACCAAAATACCCTTATATGGTAAAATGACCGAAATACCCCCATATCATAGAATTACCAAA
1 AAATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAGAATGATCGAA
32052731 ATACCCCCATAGGGTA
66 ATACCCCCATAGGGTA
*
32052747 AAATGATCGAAATACCCCCTATAGGGTAAAATGACC-AAAGTACCCCCATAGGGTAGAATGATCG
1 AAATGACCGAAATA-CCCCTATAGGGTAAAATGACCGAAA-TACCCCCATAGGGTAGAATGATCG
32052811 AAATACCCCCATAGGGTA
64 AAATACCCCCATAGGGTA
* * * * *
32052829 GAATGACTGAAATACCCCAATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGATCGAA
1 AAATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAGAATGATCGAA
32052894 ATACCCCCATAGGGTA
66 ATACCCCCATAGGGTA
* * * * *
32052910 AAATGATCGATATACCCCTATAGGGTAAAATAACCAAAATACCCCCATAGGGTAGAATAATCGAA
1 AAATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAGAATGATCGAA
*
32052975 ATACCCTCATAGGGTA
66 ATACCCCCATAGGGTA
* * *
32052991 AAATGACCGAAATACCCCTATAGGGTAAAATAACCAAAATACCCCCATAGGGTAGAAT-AACTGA
1 AAATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAGAATGATC-GA
**
32053055 AATACCCCTGTAGGGTA
65 AATACCCCCATAGGGTA
* * *
32053072 AAAT-AGCCGAAATACCCCTATAAGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGATCGA
1 AAATGA-CCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAGAATGATCGA
32053136 AATACCCCCATAGGGTA
65 AATACCCCCATAGGGTA
32053153 AAATGA
1 AAATGA
32053159 TTGTTATACC
Statistics
Matches: 430, Mismatches: 56, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
80 3 0.01
81 355 0.83
82 72 0.17
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (81 bp):
AAATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAGAATGATCGAA
ATACCCCCATAGGGTA
Found at i:32061513 original size:22 final size:21
Alignment explanation
Indices: 32061488--32061545 Score: 73
Period size: 20 Copynumber: 2.8 Consensus size: 21
32061478 TTGATACAAA
*
32061488 ATTTTGATATTTTATGTCAATT
1 ATTTTTATATTTTAT-TCAATT
* *
32061510 ATTTTTAT-TTTTCTTTAATT
1 ATTTTTATATTTTATTCAATT
32061530 ATTTTTATATTTTATT
1 ATTTTTATATTTTATT
32061546 ATTCTATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 13 0.42
21 11 0.35
22 7 0.23
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.69
Consensus pattern (21 bp):
ATTTTTATATTTTATTCAATT
Found at i:32071514 original size:173 final size:175
Alignment explanation
Indices: 32071222--32071572 Score: 634
Period size: 173 Copynumber: 2.0 Consensus size: 175
32071212 TTTGATCTCT
32071222 AAGATTGAGATTCCTTTTCTTTTCTTTTTGAGAGCTTAACTTATTGCACCTTTTTTTTCTTTTAG
1 AAGATTGAGATTCCTTTTC-TTTCTTTTTGAGAGCTTAACTTATTGCACCTTTTTTTTCTTTTAG
*
32071287 CTATTTTTTTTCTTGGTGGTGAAATAAGTGAGGATCTCAGAATGAAGGGTAGGTTCATATAGCTG
65 CTATTTTTTTTCTTGGTAGTGAAATAAGTGAGGATCTCAGAATGAAGGGTAGGTTCATATAGCTG
*
32071352 ATGATCGATTGAGTTAATAACATGCCACCTCCACATTTGTCGTTTA
130 ATGATCGATTGAGTTAATAACATGCCACCCCCACATTTGTCGTTTA
* *
32071398 AAGATTGGGATTCCTTTTC-TT-TTTTTGAGAGCTTAACTTATTGCGCCTTTTTTTTCTTTTAGC
1 AAGATTGAGATTCCTTTTCTTTCTTTTTGAGAGCTTAACTTATTGCACCTTTTTTTTCTTTTAGC
32071461 TATTTTTTTTCTTGGTAGTGAAATAAGTGAGGATCTCAGAATGAAGGGTAGGTTCATATAGCTGA
66 TATTTTTTTTCTTGGTAGTGAAATAAGTGAGGATCTCAGAATGAAGGGTAGGTTCATATAGCTGA
*
32071526 TGATTGATTGAGTTAATAACATGCCACCCCCACATTTGTCGTTTA
131 TGATCGATTGAGTTAATAACATGCCACCCCCACATTTGTCGTTTA
32071571 AA
1 AA
32071573 CCTCTTCATT
Statistics
Matches: 170, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
173 150 0.88
174 2 0.01
176 18 0.11
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (175 bp):
AAGATTGAGATTCCTTTTCTTTCTTTTTGAGAGCTTAACTTATTGCACCTTTTTTTTCTTTTAGC
TATTTTTTTTCTTGGTAGTGAAATAAGTGAGGATCTCAGAATGAAGGGTAGGTTCATATAGCTGA
TGATCGATTGAGTTAATAACATGCCACCCCCACATTTGTCGTTTA
Found at i:32080137 original size:50 final size:50
Alignment explanation
Indices: 32080067--32080254 Score: 164
Period size: 51 Copynumber: 3.7 Consensus size: 50
32080057 TATCATTCGA
* * *
32080067 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAACTTTCCGG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTGA-CAAAACCTTCCAG
* * * *
32080117 TTCACGCAGTAGCCTGCACATAGTACTACACACATGGACAAAACCTTCCAG
1 TACACGTAGTAGCCTACACATAGTACTACACACGT-GACAAAACCTTCCAG
* * * ** * *
32080168 TACACATAGTAGCCTACACATGGTACTACACATGTGACCATTATCTATCGA-
1 TACACGTAGTAGCCTACACATAGTACTACACACGTGA-CAAAACCT-TCCAG
** * *
32080219 TACACGTAGTAGCCTGGACTTAGTATTACACACGTG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTG
32080255 TTTATAGGCA
Statistics
Matches: 110, Mismatches: 24, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
50 34 0.31
51 73 0.66
52 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
TACACGTAGTAGCCTACACATAGTACTACACACGTGACAAAACCTTCCAG
Found at i:32081435 original size:13 final size:13
Alignment explanation
Indices: 32081419--32081444 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32081409 TTCAAACGAA
32081419 ATTTTCATGAAAT
1 ATTTTCATGAAAT
32081432 ATTTTCATGAAAT
1 ATTTTCATGAAAT
32081445 TGTAGACCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
ATTTTCATGAAAT
Found at i:32089827 original size:22 final size:22
Alignment explanation
Indices: 32089802--32089865 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 22
32089792 AGCTGTATAC
32089802 AATTAGAACTCTAAGATTACAT
1 AATTAGAACTCTAAGATTACAT
* *
32089824 AATTAAAAGT-T--G-TATAC--
1 AATTAGAACTCTAAGAT-TACAT
32089841 AATTAGAACTCTAAGATTACAT
1 AATTAGAACTCTAAGATTACAT
32089863 AAT
1 AAT
32089866 CATATCTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 14
0.63 0.08 0.29
Matches are distributed among these distances:
17 8 0.26
18 2 0.06
19 4 0.13
20 4 0.13
21 2 0.06
22 11 0.35
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (22 bp):
AATTAGAACTCTAAGATTACAT
Found at i:32089828 original size:39 final size:39
Alignment explanation
Indices: 32089785--32089865 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
32089775 CAATGGTTAC
32089785 AATTAAAAGCTGTATACAATTAGAACTCTAAGATTACAT
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGATTACAT
*
32089824 AATTAAAAGTTGTATACAATTAGAACTCTAAGATTACAT
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGATTACAT
32089863 AAT
1 AAT
32089866 CATATCTTCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.32
Consensus pattern (39 bp):
AATTAAAAGCTGTATACAATTAGAACTCTAAGATTACAT
Found at i:32091641 original size:469 final size:469
Alignment explanation
Indices: 32090763--32091692 Score: 1718
Period size: 469 Copynumber: 2.0 Consensus size: 469
32090753 CCACTTTGTT
*
32090763 TGCAAGTTGTATGAAAATTGGGCCACATCCAACAAATTTGGCCAATCCCTTTGTGTGGGACTTAC
1 TGCAAGTTGTATGAAAATTGGGCCACATCCAACAAATTTGGCCAATCCCTTTGTGTGGCACTTAC
* *
32090828 GTAGTGTCGAAGATATGTCTCCAACAATGCATTTACTTGTTCAGTTTGCCCATCGATTTGTGGAT
66 ATAGTGTCGAAGATATGTCTCCAACAATGCATTTACTCGTTCAGTTTGCCCATCGATTTGTGGAT
* * * *
32090893 ACATGCTCGTGGAGAAGCTCAAATCTGAGCCTATTGACTTGAACAACTCTGTCTAAAACCGGCCC
131 ACATGCTCGTGGAGAAGCTCAAATCTGAGCCCATTGACTTGAACAACTCTATCCAAAACCAGCCC
32090958 GTAAATCGCCCATCTCGATCACTGATAATAAACAGTGGCACTCCCCAATATTTCACCACGTGTCT
196 GTAAATCGCCCATCTCGATCACTGATAATAAACAGTGGCACTCCCCAATATTTCACCACGTGTCT
32091023 AAGAAACAACTGAGCTGCTTCCTCAACAGGGCACTCCTTAGTCGCCGAAATAAATGTCGCATACT
261 AAGAAACAACTGAGCTGCTTCCTCAACAGGGCACTCCTTAGTCGCCGAAATAAATGTCGCATACT
32091088 TTGAAAACCTGTCCACCACAACAAGAATACTCCCAAACCCGTCAGACTTAGGCAAACCAATAATA
326 TTGAAAACCTGTCCACCACAACAAGAATACTCCCAAACCCGTCAGACTTAGGCAAACCAATAATA
32091153 AAATCCATGGATAAACTCTCCCATGACCTTTCTAGAACTGGCAAGGGTTGAAGTAAACTGGCTAG
391 AAATCCATGGATAAACTCTCCCATGACCTTTCTAGAACTGGCAAGGGTTGAAGTAAACTGGCTAG
32091218 AGTCTTCACTTCAC
456 AGTCTTCACTTCAC
*
32091232 TGCAAGTTGTATGAAAATTGGGCCACATCCAACAACTTTGGCCAATCCCTTTGTGTGGCACTTAC
1 TGCAAGTTGTATGAAAATTGGGCCACATCCAACAAATTTGGCCAATCCCTTTGTGTGGCACTTAC
* * *
32091297 ATAGTGTCGAAGATATGTCTCCAACAATGCATTTACTCGTTCAGTTTGCTCATTGGTTTGTGGAT
66 ATAGTGTCGAAGATATGTCTCCAACAATGCATTTACTCGTTCAGTTTGCCCATCGATTTGTGGAT
* * *
32091362 GCATGCTCGTGGAGAAGTTCAAATCTGAGCCCATTGACTTGAACAACT-TCATCCAGAACCAGCC
131 ACATGCTCGTGGAGAAGCTCAAATCTGAGCCCATTGACTTGAACAACTCT-ATCCAAAACCAGCC
32091426 CGTAAATCGCCCATCTCGATCACTGATAATAAACAGTGGCACTCCCCAATATTTCACCACGTGTC
195 CGTAAATCGCCCATCTCGATCACTGATAATAAACAGTGGCACTCCCCAATATTTCACCACGTGTC
32091491 TAAGAAACAACTGAGCTGCTTCCTCAACAGGGCACTCCTTAGTCGCCGAAATAAATGTCGCATAC
260 TAAGAAACAACTGAGCTGCTTCCTCAACAGGGCACTCCTTAGTCGCCGAAATAAATGTCGCATAC
32091556 TTTGAAAACCTGTCCACCACAACAAGAATACTCCCAAACCCGTCAGACTTAGGCAAACCAATAAT
325 TTTGAAAACCTGTCCACCACAACAAGAATACTCCCAAACCCGTCAGACTTAGGCAAACCAATAAT
32091621 AAAATCCATGGATAAACTCTCCCATGACCTTTCTAGAACTGGCAAGGGTTGAAGTAAACTGGCTA
390 AAAATCCATGGATAAACTCTCCCATGACCTTTCTAGAACTGGCAAGGGTTGAAGTAAACTGGCTA
32091686 GAGTCTT
455 GAGTCTT
32091693 TAACTCAACC
Statistics
Matches: 446, Mismatches: 14, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
468 1 0.00
469 445 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (469 bp):
TGCAAGTTGTATGAAAATTGGGCCACATCCAACAAATTTGGCCAATCCCTTTGTGTGGCACTTAC
ATAGTGTCGAAGATATGTCTCCAACAATGCATTTACTCGTTCAGTTTGCCCATCGATTTGTGGAT
ACATGCTCGTGGAGAAGCTCAAATCTGAGCCCATTGACTTGAACAACTCTATCCAAAACCAGCCC
GTAAATCGCCCATCTCGATCACTGATAATAAACAGTGGCACTCCCCAATATTTCACCACGTGTCT
AAGAAACAACTGAGCTGCTTCCTCAACAGGGCACTCCTTAGTCGCCGAAATAAATGTCGCATACT
TTGAAAACCTGTCCACCACAACAAGAATACTCCCAAACCCGTCAGACTTAGGCAAACCAATAATA
AAATCCATGGATAAACTCTCCCATGACCTTTCTAGAACTGGCAAGGGTTGAAGTAAACTGGCTAG
AGTCTTCACTTCAC
Found at i:32095222 original size:49 final size:48
Alignment explanation
Indices: 32095129--32095222 Score: 134
Period size: 48 Copynumber: 1.9 Consensus size: 48
32095119 TTTCTTTGCT
* * * *
32095129 TAAAAACGCCTAAGTCAGCCTAACTCGCAATGATAATGGATTCAACAG
1 TAAAAACACCTAAGTCAGCCTAACACGCAACGATAAAGGATTCAACAG
*
32095177 TAAAAACACCTAAGTCAGCGTAATCACGCAACGATAAAGGATTCAA
1 TAAAAACACCTAAGTCAGCCTAA-CACGCAACGATAAAGGATTCAA
32095223 TAGAATTCCC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
48 21 0.52
49 19 0.47
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (48 bp):
TAAAAACACCTAAGTCAGCCTAACACGCAACGATAAAGGATTCAACAG
Found at i:32095497 original size:39 final size:39
Alignment explanation
Indices: 32095454--32095530 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
32095444 CAATGGCTAC
32095454 AATTAAAAGCTGTATACAATTAGAACTCTAAGATTACAG
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGATTACAG
32095493 AATTAAAAGCTGTATACAATTAGAACTCTAAGATTACA
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGATTACA
32095531 TAATCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.29
Consensus pattern (39 bp):
AATTAAAAGCTGTATACAATTAGAACTCTAAGATTACAG
Found at i:32098121 original size:20 final size:21
Alignment explanation
Indices: 32098076--32098122 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
32098066 CTTTCTTCTT
**
32098076 AATATATGATTTTGATTGTGA
1 AATATATGATTTTGATTGACA
*
32098097 AATATATGCTTTTGATT-ACA
1 AATATATGATTTTGATTGACA
32098117 AATATA
1 AATATA
32098123 CAACAATATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.45
Consensus pattern (21 bp):
AATATATGATTTTGATTGACA
Found at i:32116915 original size:16 final size:16
Alignment explanation
Indices: 32116880--32116915 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
32116870 AAAAGTGTGT
*
32116880 AGATCAGATGATCTGC
1 AGATCAGATGATCAGC
*
32116896 AGATCAGATGATCAGG
1 AGATCAGATGATCAGC
32116912 AGAT
1 AGAT
32116916 GCGTTATACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.22
Consensus pattern (16 bp):
AGATCAGATGATCAGC
Found at i:32124125 original size:18 final size:19
Alignment explanation
Indices: 32124102--32124137 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
32124092 ATTGCATTTT
32124102 ATTTTTGTTTT-TAGTTTA
1 ATTTTTGTTTTGTAGTTTA
32124120 ATTTTTGTTTTGTAGTTT
1 ATTTTTGTTTTGTAGTTT
32124138 TTCTTTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.72
Consensus pattern (19 bp):
ATTTTTGTTTTGTAGTTTA
Found at i:32130957 original size:23 final size:23
Alignment explanation
Indices: 32130906--32130957 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
32130896 ATACCAATTA
**
32130906 GAAGAAGATCTAAGAGGCCACTC
1 GAAGAAGATCTAAGAGAACACTC
32130929 -AGAGAAGAT-TGAAGAGAACACTC
1 GA-AGAAGATCT-AAGAGAACACTC
32130952 GAAGAA
1 GAAGAA
32130958 CGCCATCGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
22 2 0.08
23 21 0.88
24 1 0.04
ACGTcount: A:0.46, C:0.15, G:0.27, T:0.12
Consensus pattern (23 bp):
GAAGAAGATCTAAGAGAACACTC
Found at i:32135749 original size:33 final size:33
Alignment explanation
Indices: 32135707--32135772 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
32135697 GAAAATTCAC
32135707 TATGTCGAATTCAAATGATTACAAGACGAGTAG
1 TATGTCGAATTCAAATGATTACAAGACGAGTAG
*
32135740 TATGTCGAATTCAAATGATTACAAGAGGAGTAG
1 TATGTCGAATTCAAATGATTACAAGACGAGTAG
32135773 ACTATGTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.27
Consensus pattern (33 bp):
TATGTCGAATTCAAATGATTACAAGACGAGTAG
Found at i:32135951 original size:16 final size:18
Alignment explanation
Indices: 32135930--32135967 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
32135920 TTCTACATCG
32135930 ATTTTACT-TT-TATTTT
1 ATTTTACTATTGTATTTT
32135946 ATTTTACTATTGTATTTT
1 ATTTTACTATTGTATTTT
32135964 ATTT
1 ATTT
32135968 AAATAAGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (18 bp):
ATTTTACTATTGTATTTT
Found at i:32142710 original size:13 final size:14
Alignment explanation
Indices: 32142692--32142721 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
32142682 TGACGTCGAC
32142692 TTTCTTCTTC-ATT
1 TTTCTTCTTCGATT
32142705 TTTCTTCTTCGATT
1 TTTCTTCTTCGATT
32142719 TTT
1 TTT
32142722 TGCTGCTTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.07, C:0.20, G:0.03, T:0.70
Consensus pattern (14 bp):
TTTCTTCTTCGATT
Found at i:32144787 original size:18 final size:18
Alignment explanation
Indices: 32144743--32144787 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
32144733 GCAATAAGAA
32144743 AACGTTTTGAAATTGAAT
1 AACGTTTTGAAATTGAAT
*
32144761 AACGATTTGTAAA-TGAAT
1 AACGTTTTG-AAATTGAAT
*
32144779 AATGTTTTG
1 AACGTTTTG
32144788 GAAACGAACG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (18 bp):
AACGTTTTGAAATTGAAT
Found at i:32151648 original size:157 final size:157
Alignment explanation
Indices: 32151362--32151764 Score: 716
Period size: 157 Copynumber: 2.6 Consensus size: 157
32151352 AACACAACTA
32151362 GTCTTCTATCATTTTTATCCCATTCTATGTGGTTGGGTTCAAATTTTAATACTAGATTGGGTCAA
1 GTCTTCTATCATTTTTATCCCATTCTATGTGGTTGGGTTCAAATTTTAATACTAGATTGGGTCAA
32151427 ATTCATATAGATTGATACAAAATTTTGATATTTTATGACAATTTTTTTCTTTAATTATTTTTATT
66 ATTCATATAGATTGATACAAAATTTTGATATTTTATGACAATTTTTTTCTTTAATTATTTTTATT
32151492 TTATATTACTCTATTAAAAATATAATT
131 TTATATTACTCTATTAAAAATATAATT
32151519 GTCTTCTATCATTTTTATCCCATTCTATGTGGTTGGGTTCAAATTTTAATACTAGATTGGGTCAA
1 GTCTTCTATCATTTTTATCCCATTCTATGTGGTTGGGTTCAAATTTTAATACTAGATTGGGTCAA
32151584 ATTCATATAGATTGATACAAAATTTTGATATTTTATGACAATTTTTTTCTTTAATTATTTTTATT
66 ATTCATATAGATTGATACAAAATTTTGATATTTTATGACAATTTTTTTCTTTAATTATTTTTATT
32151649 TTATATTACTCTATTAAAAATATAATT
131 TTATATTACTCTATTAAAAATATAATT
* * ** * ***
32151676 GTCTTCTATCATTTTTATCCTATTCTATGTGGTTGGATAAAAATTGTAATACTAGATTCTATCAA
1 GTCTTCTATCATTTTTATCCCATTCTATGTGGTTGGGTTCAAATTTTAATACTAGATTGGGTCAA
* *
32151741 ATTCATAGAGATTGATAGAAAATT
66 ATTCATATAGATTGATACAAAATT
32151765 AGAAACATTA
Statistics
Matches: 236, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 236 1.00
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.48
Consensus pattern (157 bp):
GTCTTCTATCATTTTTATCCCATTCTATGTGGTTGGGTTCAAATTTTAATACTAGATTGGGTCAA
ATTCATATAGATTGATACAAAATTTTGATATTTTATGACAATTTTTTTCTTTAATTATTTTTATT
TTATATTACTCTATTAAAAATATAATT
Found at i:32153532 original size:43 final size:43
Alignment explanation
Indices: 32153452--32153575 Score: 119
Period size: 43 Copynumber: 2.9 Consensus size: 43
32153442 GACTCCAATA
* *
32153452 TGTGTTTTCGTGTAAGACCACGTTTGGGACGTCGGCATCGACT
1 TGTGTTTTCGTGTAAGACCACGTCTAGGACGTCGGCATCGACT
*
32153495 TGTGTTTTCGTGTAAGACC-CTGTCTAGGACAGT-GGCATCG-GT
1 TGTGTTTTCGTGTAAGACCAC-GTCTAGGAC-GTCGGCATCGACT
* * * * * *
32153537 ATATGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 -TGTGTTTTCGTGTAAGACCACGTCTAGGACGTCGGCAT
32153576 TGTACTAGCT
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
42 4 0.06
43 61 0.90
44 3 0.04
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.31
Consensus pattern (43 bp):
TGTGTTTTCGTGTAAGACCACGTCTAGGACGTCGGCATCGACT
Found at i:32154246 original size:14 final size:15
Alignment explanation
Indices: 32154222--32154256 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
32154212 TACTTTAATC
32154222 ATGGATTAGTATTT-T
1 ATGG-TTAGTATTTAT
32154237 ATGGTTAGTATTTAT
1 ATGGTTAGTATTTAT
32154252 ATGGT
1 ATGGT
32154257 AATGTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (15 bp):
ATGGTTAGTATTTAT
Found at i:32155131 original size:225 final size:225
Alignment explanation
Indices: 32154730--32155177 Score: 738
Period size: 225 Copynumber: 2.0 Consensus size: 225
32154720 CATTTTATAC
* *
32154730 TGAGATAGTGTGATGACTTCTGACATCTAAAAAATGTGTTTTCGTATAGTAATGGATCCCGATCG
1 TGAGATAGTGTGATGACTGCTGACATCTAAAAAATGTGTTTTCGTATAGTAATGGATCCCGAACG
* * *
32154795 AGCCGTAGCTGATGATGTTGAGAGTATAGCGCCTGCTCCCGCGCAAGGGGCCGAGCCATTGATTC
66 AGCCGTAGCTGATGATGTTGAGAGTATAGCGCCTGCTCCCGCGCAAGGGACAGAGCCATAGATTC
* * *
32154860 TCGACCAATTTCGAGTAATCAAGAGGGAGAAGCTAGACAAGCCTTCTACCAAATGATGAACGACT
131 TCGACCAATCTCGAGTAACCAAGAGGGAGAAGCTAAACAAGCCTTCTACCAAATGATGAACGACT
32154925 GGTTTACTCAATATATCC-AGACTAATCCTG
196 GGTTTACTCAATATATCCGA-ACTAATCCTG
*
32154955 TGAGATAGTGTGATGACTGCTGACGTCT-AAAAATGTGTTTTCGTATAGTAATGGATCCCGAACG
1 TGAGATAGTGTGATGACTGCTGACATCTAAAAAATGTGTTTTCGTATAGTAATGGATCCCGAACG
32155019 AGCCGTAGCTGATGATGTTGAGAGTATAGCGCCTGCTCCCGCGCAAGGGACAGAGCCAGTAGATT
66 AGCCGTAGCTGATGATGTTGAGAGTATAGCGCCTGCTCCCGCGCAAGGGACAGAGCCA-TAGATT
* * *
32155084 CTCGACCAATCTCGAGTAACCAGGAGGGAGAGGCTAAACAAGCCTTCTACCAAATGATGAATGAC
130 CTCGACCAATCTCGAGTAACCAAGAGGGAGAAGCTAAACAAGCCTTCTACCAAATGATGAACGAC
* *
32155149 TGGTTTACTCATTATGTCCGAACTAATCC
195 TGGTTTACTCAATATATCCGAACTAATCC
32155178 GGTTACACAA
Statistics
Matches: 207, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
224 91 0.44
225 115 0.56
226 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (225 bp):
TGAGATAGTGTGATGACTGCTGACATCTAAAAAATGTGTTTTCGTATAGTAATGGATCCCGAACG
AGCCGTAGCTGATGATGTTGAGAGTATAGCGCCTGCTCCCGCGCAAGGGACAGAGCCATAGATTC
TCGACCAATCTCGAGTAACCAAGAGGGAGAAGCTAAACAAGCCTTCTACCAAATGATGAACGACT
GGTTTACTCAATATATCCGAACTAATCCTG
Found at i:32158441 original size:349 final size:349
Alignment explanation
Indices: 32157802--32158500 Score: 1335
Period size: 349 Copynumber: 2.0 Consensus size: 349
32157792 TAAATGGTTT
32157802 GGGCTGTGTTTTGATGCAGGAAGGCAAAGTTGTAGCCTATGCCTCGAGACAGTTAAAGTCGCACG
1 GGGCTGTGTTTTGATGCAGGAAGGCAAAGTTGTAGCCTATGCCTCGAGACAGTTAAAGTCGCACG
32157867 AAAAGAGCTATCCGACGCACGATCTTGAATTGGCCGCTATTGTATTTGTGTTGAAAATATGGCGT
66 AAAAGAGCTATCCGACGCACGATCTTGAATTGGCCGCTATTGTATTTGTGTTGAAAATATGGCGT
32157932 CACTATCTGTTTGGTGAAAAATGTCATGTTTATTCCGATCACAAAAGCCTGAAGTATTTGATGAC
131 CACTATCTGTTTGGTGAAAAATGTCATGTTTATTCCGATCACAAAAGCCTGAAGTATTTGATGAC
32157997 TCATAAAGATCTAAATTTGAGATAGTGTCGATGGTTAGAATTGCTAAAAGATTACGAGCTTGTGA
196 TCATAAAGATCTAAATTTGAGATAGTGTCGATGGTTAGAATTGCTAAAAGATTACGAGCTTGTGA
*
32158062 TTGACTATCATCCGGGAAAGGCTAATGTTGTTGCTGATGCCCTAAGTCGAAAATCACTATTTGCT
261 TTGACTATCATCCGGGAAAAGCTAATGTTGTTGCTGATGCCCTAAGTCGAAAATCACTATTTGCT
* *
32158127 TTGCGTGCAATGAACGCGTATATG
326 TTGCGTACAATGAACGCGCATATG
32158151 GGGCTGTGTTTTGATGCAGGAAGGCAAAGTTGTAGCCTATGCCTCGAGACAGTTAAAGTCGCACG
1 GGGCTGTGTTTTGATGCAGGAAGGCAAAGTTGTAGCCTATGCCTCGAGACAGTTAAAGTCGCACG
32158216 AAAAGAGCTATCCGACGCACGATCTTGAATTGGCCGCTATTGTATTTGTGTTGAAAATATGGCGT
66 AAAAGAGCTATCCGACGCACGATCTTGAATTGGCCGCTATTGTATTTGTGTTGAAAATATGGCGT
*
32158281 CACTCTCTGTTTGGTGAAAAATGTCATGTTTATTCCGATCACAAAAGCCTGAAGTATTTGATGAC
131 CACTATCTGTTTGGTGAAAAATGTCATGTTTATTCCGATCACAAAAGCCTGAAGTATTTGATGAC
32158346 TCATAAAGATCTAAATTTGAGATAGTGTCGATGGTTAGAATTGCTAAAAGATTACGAGCTTGTGA
196 TCATAAAGATCTAAATTTGAGATAGTGTCGATGGTTAGAATTGCTAAAAGATTACGAGCTTGTGA
* * *
32158411 TTGACTATCATTCGGGAAAAGCTAATGTTGTTGCTGATGCCCTAAGTCGAAAGTCACTATTTGTT
261 TTGACTATCATCCGGGAAAAGCTAATGTTGTTGCTGATGCCCTAAGTCGAAAATCACTATTTGCT
32158476 TTGCGTACAATGAACGCGCATATG
326 TTGCGTACAATGAACGCGCATATG
32158500 G
1 G
32158501 CTATGTCTGA
Statistics
Matches: 343, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
349 343 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (349 bp):
GGGCTGTGTTTTGATGCAGGAAGGCAAAGTTGTAGCCTATGCCTCGAGACAGTTAAAGTCGCACG
AAAAGAGCTATCCGACGCACGATCTTGAATTGGCCGCTATTGTATTTGTGTTGAAAATATGGCGT
CACTATCTGTTTGGTGAAAAATGTCATGTTTATTCCGATCACAAAAGCCTGAAGTATTTGATGAC
TCATAAAGATCTAAATTTGAGATAGTGTCGATGGTTAGAATTGCTAAAAGATTACGAGCTTGTGA
TTGACTATCATCCGGGAAAAGCTAATGTTGTTGCTGATGCCCTAAGTCGAAAATCACTATTTGCT
TTGCGTACAATGAACGCGCATATG
Found at i:32161972 original size:47 final size:47
Alignment explanation
Indices: 32161605--32161948 Score: 661
Period size: 47 Copynumber: 7.3 Consensus size: 47
32161595 NNNNNNNNNN
*
32161605 AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGACGTAT
1 AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGATGTAT
*
32161652 AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGACGTAT
1 AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGATGTAT
*
32161699 AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGACGTAT
1 AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGATGTAT
32161746 AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGATGTAT
1 AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGATGTAT
32161793 AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGATGTAT
1 AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGATGTAT
32161840 AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGATGTAT
1 AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGATGTAT
32161887 AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGATGTAT
1 AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGATGTAT
32161934 AAATGCAGTCCAATT
1 AAATGCAGTCCAATT
32161949 TTGTAAATAT
Statistics
Matches: 296, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 296 1.00
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (47 bp):
AAATGCAGTCCAATTATATATGTATATGCTGTCAATTTTTGATGTAT
Found at i:32162308 original size:12 final size:12
Alignment explanation
Indices: 32162291--32162315 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32162281 GTTATCTGTT
32162291 TATATATATATG
1 TATATATATATG
32162303 TATATATATATG
1 TATATATATATG
32162315 T
1 T
32162316 GGAATGAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TATATATATATG
Found at i:32171664 original size:27 final size:27
Alignment explanation
Indices: 32171625--32172034 Score: 390
Period size: 27 Copynumber: 15.1 Consensus size: 27
32171615 AGAGGTCAAT
*
32171625 AAATGACCAAATTACCCCCACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* ** *
32171652 AAATAATTGAATTACCCCCACAAGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
32171679 AAATGACCGAATTACCCCCACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* *
32171706 AAATGATCGAATTACCCTCACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
** **
32171733 AAATGATTGAATTACCCTTACAGGGTAA
1 AAATGACCGAATTACCCCCACAGGGT-A
* *
32171761 AAATGACCAAATTACCCCCACGGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
*
32171788 AAATGATCGAATTACCCCCACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
32171815 AAATGACCGAATTACCCCCACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * *
32171842 AGATGACCGAACTACCCCCATAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * * *
32171869 AGATGACCGAACTACCTCTACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * * * *
32171896 AAATAACCGAAAT-CCCTCAATAAGGTA
1 AAATGACCGAATTACCC-CCACAGGGTA
* * * * *
32171923 AAATAACTGAAATACCCTCATAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * * *
32171950 AAATGATCGAAATACCCTCATAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* *** *
32171977 AAATGACCGAAATACCGTTATAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * * **
32172004 AAATAACTGAAATACCCCCGTAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
32172031 AAAT
1 AAAT
32172035 AACTGTTATA
Statistics
Matches: 328, Mismatches: 52, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
26 2 0.01
27 302 0.92
28 24 0.07
ACGTcount: A:0.40, C:0.23, G:0.18, T:0.19
Consensus pattern (27 bp):
AAATGACCGAATTACCCCCACAGGGTA
Found at i:32174315 original size:45 final size:45
Alignment explanation
Indices: 32174251--32174340 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
32174241 ATTGACCTCT
32174251 GATCTCGGTATCATCAATTAAGGGTTAAGGAGGCTGATGTTTATA
1 GATCTCGGTATCATCAATTAAGGGTTAAGGAGGCTGATGTTTATA
32174296 GATCTCGGTATCATCAATTAAGGGTTAAGGAGGCTGATGTTTATA
1 GATCTCGGTATCATCAATTAAGGGTTAAGGAGGCTGATGTTTATA
32174341 AGATGGCATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (45 bp):
GATCTCGGTATCATCAATTAAGGGTTAAGGAGGCTGATGTTTATA
Found at i:32183322 original size:29 final size:28
Alignment explanation
Indices: 32183282--32183338 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
32183272 TAATTTTTTG
*
32183282 GTTAAATATTATTAT-AATTATTATATTCA
1 GTTAAATATTATAATGAATT-TT-TATTCA
*
32183311 GTTAATTATTATAATGAATTTTTATTCA
1 GTTAAATATTATAATGAATTTTTATTCA
32183339 TATTAAGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.24
29 15 0.60
30 4 0.16
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.53
Consensus pattern (28 bp):
GTTAAATATTATAATGAATTTTTATTCA
Found at i:32186920 original size:23 final size:21
Alignment explanation
Indices: 32186894--32186941 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 21
32186884 TCAATAATTT
32186894 TGTTA-AATCATTTTTAATTGGAC
1 TGTTACAA-CATTTTT-A-TGGAC
32186917 TGTTAGCAACATTTTTATGGAC
1 TGTTA-CAACATTTTTATGGAC
32186939 TGT
1 TGT
32186942 GGTATAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
22 8 0.35
23 6 0.26
24 7 0.30
25 2 0.09
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46
Consensus pattern (21 bp):
TGTTACAACATTTTTATGGAC
Found at i:32188661 original size:26 final size:26
Alignment explanation
Indices: 32188632--32188684 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32188622 TCATAGATGC
32188632 AAATATATCTCAATTACATAATATAA
1 AAATATATCTCAATTACATAATATAA
*
32188658 AAATATATCTCAATTACATAGTATAA
1 AAATATATCTCAATTACATAATATAA
32188684 A
1 A
32188685 TACATATACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.53, C:0.11, G:0.02, T:0.34
Consensus pattern (26 bp):
AAATATATCTCAATTACATAATATAA
Found at i:32188691 original size:26 final size:26
Alignment explanation
Indices: 32188636--32188691 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
32188626 AGATGCAAAT
*
32188636 ATATCTCAATTACATAATATAAAAAT
1 ATATCTCAATTACATAATATAAAAAC
* *
32188662 ATATCTCAATTACATAGTATAAATAC
1 ATATCTCAATTACATAATATAAAAAC
32188688 ATAT
1 ATAT
32188692 ACACACATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.50, C:0.12, G:0.02, T:0.36
Consensus pattern (26 bp):
ATATCTCAATTACATAATATAAAAAC
Found at i:32194718 original size:5 final size:5
Alignment explanation
Indices: 32194708--32194783 Score: 152
Period size: 5 Copynumber: 15.2 Consensus size: 5
32194698 TAGGCTAATA
32194708 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
32194758 ATTAT ATTAT ATTAT ATTAT ATTAT A
1 ATTAT ATTAT ATTAT ATTAT ATTAT A
32194784 GATCAAGAGC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 71 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:32196195 original size:24 final size:24
Alignment explanation
Indices: 32196163--32196212 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
32196153 TATGCAGCAT
* *
32196163 ACGGCCTGGGACACAGGTTGTCAC
1 ACGGCCTGGGACACAGGCTATCAC
32196187 ACGGCCTGGGACACAGGCTATCAC
1 ACGGCCTGGGACACAGGCTATCAC
32196211 AC
1 AC
32196213 ACGACACACG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.32, G:0.30, T:0.14
Consensus pattern (24 bp):
ACGGCCTGGGACACAGGCTATCAC
Found at i:32197300 original size:21 final size:21
Alignment explanation
Indices: 32197241--32197350 Score: 116
Period size: 23 Copynumber: 5.1 Consensus size: 21
32197231 CCTGATCAGT
32197241 ATACGACACAT-AAGTGCCTG
1 ATACGACACATAAAGTGCCTG
* * **
32197261 AAACAACACA-CGAGTTGCCTG
1 ATACGACACATAAAG-TGCCTG
32197282 ATACGACACATAAAGTGCCTGAG
1 ATACGACACATAAAGTGCCT--G
32197305 ATACGACACATAAAGTGCCTG
1 ATACGACACATAAAGTGCCTG
*
32197326 ATGTACGACACATAAAGTGTCTG
1 A--TACGACACATAAAGTGCCTG
32197349 AT
1 AT
32197351 TGGCAAAGCC
Statistics
Matches: 75, Mismatches: 8, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
20 10 0.13
21 22 0.29
22 2 0.03
23 41 0.55
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (21 bp):
ATACGACACATAAAGTGCCTG
Found at i:32197350 original size:23 final size:24
Alignment explanation
Indices: 32197280--32197350 Score: 119
Period size: 23 Copynumber: 3.0 Consensus size: 24
32197270 ACGAGTTGCC
32197280 TGATACGACACATAAAGTGCCTGA
1 TGATACGACACATAAAGTGCCTGA
32197304 -GATACGACACATAAAGTGCCTGA
1 TGATACGACACATAAAGTGCCTGA
*
32197327 TG-TACGACACATAAAGTGTCTGA
1 TGATACGACACATAAAGTGCCTGA
32197350 T
1 T
32197351 TGGCAAAGCC
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
23 44 0.98
24 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.23
Consensus pattern (24 bp):
TGATACGACACATAAAGTGCCTGA
Found at i:32198133 original size:279 final size:279
Alignment explanation
Indices: 32197633--32198191 Score: 1118
Period size: 279 Copynumber: 2.0 Consensus size: 279
32197623 ACTTACCTTA
32197633 TATTTCACTTACCTTATTATTCGCTTACCATACACATAATTTAAATTTAACATTAAAATAATAAA
1 TATTTCACTTACCTTATTATTCGCTTACCATACACATAATTTAAATTTAACATTAAAATAATAAA
32197698 TAATTTGAATTATAATAATACAAACCCGAATTTCACAGTTACTCCTCAACGACCTTCTCCTTCCC
66 TAATTTGAATTATAATAATACAAACCCGAATTTCACAGTTACTCCTCAACGACCTTCTCCTTCCC
32197763 TTTTTGTGCTGATACCTCAAATTCTTTATTAGCTACGAAAATTAAATAATTAAATAATTAATTAT
131 TTTTTGTGCTGATACCTCAAATTCTTTATTAGCTACGAAAATTAAATAATTAAATAATTAATTAT
32197828 AGCAAAAAATTTTACAATAAAAATAAAATTTCTATCAAATTTTATACTTTAATTCCAATTTAATC
196 AGCAAAAAATTTTACAATAAAAATAAAATTTCTATCAAATTTTATACTTTAATTCCAATTTAATC
32197893 CTAACTAGATTTATCTAAC
261 CTAACTAGATTTATCTAAC
32197912 TATTTCACTTACCTTATTATTCGCTTACCATACACATAATTTAAATTTAACATTAAAATAATAAA
1 TATTTCACTTACCTTATTATTCGCTTACCATACACATAATTTAAATTTAACATTAAAATAATAAA
32197977 TAATTTGAATTATAATAATACAAACCCGAATTTCACAGTTACTCCTCAACGACCTTCTCCTTCCC
66 TAATTTGAATTATAATAATACAAACCCGAATTTCACAGTTACTCCTCAACGACCTTCTCCTTCCC
32198042 TTTTTGTGCTGATACCTCAAATTCTTTATTAGCTACGAAAATTAAATAATTAAATAATTAATTAT
131 TTTTTGTGCTGATACCTCAAATTCTTTATTAGCTACGAAAATTAAATAATTAAATAATTAATTAT
32198107 AGCAAAAAATTTTACAATAAAAATAAAATTTCTATCAAATTTTATACTTTAATTCCAATTTAATC
196 AGCAAAAAATTTTACAATAAAAATAAAATTTCTATCAAATTTTATACTTTAATTCCAATTTAATC
32198172 CTAACTAGATTTATCTAAC
261 CTAACTAGATTTATCTAAC
32198191 T
1 T
32198192 TTCTAATTTA
Statistics
Matches: 280, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
279 280 1.00
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (279 bp):
TATTTCACTTACCTTATTATTCGCTTACCATACACATAATTTAAATTTAACATTAAAATAATAAA
TAATTTGAATTATAATAATACAAACCCGAATTTCACAGTTACTCCTCAACGACCTTCTCCTTCCC
TTTTTGTGCTGATACCTCAAATTCTTTATTAGCTACGAAAATTAAATAATTAAATAATTAATTAT
AGCAAAAAATTTTACAATAAAAATAAAATTTCTATCAAATTTTATACTTTAATTCCAATTTAATC
CTAACTAGATTTATCTAAC
Found at i:32198800 original size:5 final size:5
Alignment explanation
Indices: 32198792--32198842 Score: 56
Period size: 5 Copynumber: 10.6 Consensus size: 5
32198782 ATTTTACATG
32198792 ATAAT ATAAT ATAAT ATAAT A-ATAT ATAAT A-ATAT ATAAT -TAA- ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT ATA-AT ATAAT ATAAT ATAAT
32198840 ATA
1 ATA
32198843 TTACTATATT
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
4 8 0.20
5 30 0.75
6 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:32198843 original size:15 final size:16
Alignment explanation
Indices: 32198792--32198843 Score: 70
Period size: 18 Copynumber: 3.1 Consensus size: 16
32198782 ATTTTACATG
32198792 ATAATATAATATAATAT
1 ATAATATAA-ATAATAT
32198809 AATAATATATAATAATAT
1 -ATAATATA-AATAATAT
32198827 ATAAT-TAAATAATAT
1 ATAATATAAATAATAT
32198842 AT
1 AT
32198844 TACTATATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
15 10 0.30
16 2 0.06
17 5 0.15
18 15 0.45
19 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATAATATAAATAATAT
Found at i:32198851 original size:25 final size:25
Alignment explanation
Indices: 32198792--32198843 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
32198782 ATTTTACATG
32198792 ATAAT-ATAATATAATATAATAATAT
1 ATAATAAT-ATATAATATAATAATAT
32198817 ATAATAATATATAAT-TAAATAATAT
1 ATAATAATATATAATAT-AATAATAT
32198842 AT
1 AT
32198844 TACTATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 1 0.04
25 22 0.88
26 2 0.08
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
ATAATAATATATAATATAATAATAT
Found at i:32217493 original size:27 final size:27
Alignment explanation
Indices: 32217463--32217623 Score: 223
Period size: 27 Copynumber: 6.0 Consensus size: 27
32217453 ATAAATGATA
32217463 GAATTACCCCTACAGGGTAAAATGACC
1 GAATTACCCCTACAGGGTAAAATGACC
* * *
32217490 GAATTACCCCCACAGGGTAAAATCACT
1 GAATTACCCCTACAGGGTAAAATGACC
* *
32217517 AAATTACCCCCACAGGGTAAAATGACC
1 GAATTACCCCTACAGGGTAAAATGACC
* * *
32217544 GAATTACCCTTATAGGGTAAAATGATC
1 GAATTACCCCTACAGGGTAAAATGACC
*
32217571 GAATTACCCCTACAGGGTAAAATGACT
1 GAATTACCCCTACAGGGTAAAATGACC
* *
32217598 GAATTACCCCAATAGGGTAAAATGAC
1 GAATTACCCCTACAGGGTAAAATGAC
32217624 TGTTATACCC
Statistics
Matches: 117, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (27 bp):
GAATTACCCCTACAGGGTAAAATGACC
Found at i:32217649 original size:81 final size:81
Alignment explanation
Indices: 32217463--32217623 Score: 250
Period size: 81 Copynumber: 2.0 Consensus size: 81
32217453 ATAAATGATA
* * *
32217463 GAATTACCCCTACAGGGTAAAATGACCGAATTACCCCCACAGGGTAAAATCACTAAATTACCCCC
1 GAATTACCCTTATAGGGTAAAATGACCGAATTACCCCCACAGGGTAAAATCACTAAATTACCCCA
32217528 ACAGGGTAAAATGACC
66 ACAGGGTAAAATGACC
* * * *
32217544 GAATTACCCTTATAGGGTAAAATGATCGAATTACCCCTACAGGGTAAAATGACTGAATTACCCCA
1 GAATTACCCTTATAGGGTAAAATGACCGAATTACCCCCACAGGGTAAAATCACTAAATTACCCCA
*
32217609 ATAGGGTAAAATGAC
66 ACAGGGTAAAATGAC
32217624 TGTTATACCC
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 72 1.00
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (81 bp):
GAATTACCCTTATAGGGTAAAATGACCGAATTACCCCCACAGGGTAAAATCACTAAATTACCCCA
ACAGGGTAAAATGACC
Found at i:32218031 original size:28 final size:27
Alignment explanation
Indices: 32217988--32218048 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 27
32217978 ACTATACCGA
* *
32217988 TACTGTATTGGGCTAAGGCCCACATTG
1 TACTGTATTGGACTAAGGCCCACACTG
32218015 TTACTGTATTGGACTAAGGCCCACACTG
1 -TACTGTATTGGACTAAGGCCCACACTG
32218043 TACTGT
1 TACTGT
32218049 CACTAAATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 6 0.19
28 25 0.81
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (27 bp):
TACTGTATTGGACTAAGGCCCACACTG
Found at i:32231608 original size:250 final size:248
Alignment explanation
Indices: 32231169--32231657 Score: 732
Period size: 250 Copynumber: 2.0 Consensus size: 248
32231159 ACTAGAAACA
* * * * *
32231169 ATGGAATTCATAGCTTGATTAAAGAGTTAATGATATCCTTTCATTGGCATTGTGTGGATTGATAA
1 ATGGAATTCATAGCTTGATTAAAAAGTTAACGATATCCTCTCATTGGCATTGTGTAGATTCATAA
* * *
32231234 ATATGAAAAGTAGTCACAATTTGCTTGTTCTTAAACAAGCAATTTATCATAGTCATTTGTTGACA
66 ATATGAAAAGTAGCCACAATTTGCTTGTTCTTAAACAAGCAAGTTAACATAGTCATTTGTTGACA
* ***
32231299 GTGATTATATTAATCATTAAGAAGAGGTAATGGTGACAATGAGAAAAAATAAGATTGTATTGAGT
131 GTGATCATATTAATCATTAAGAAGACACAATGGTGACAATGAGAAAAAATAAGATTGTATTGAGT
*
32231364 GAACGGATTTAACTAAAAGGAATCAATGATATCATATGATGGTATTAGCAATG
196 GAACGGATTTAACTAAAAGGAATCAATGATATCATATGAGGGTATTAGCAATG
*
32231417 ATGGAATTTATAGCTTGATTAAAAAGTTAACGATATCCTCTCATTGGCATTGTGTAGATTCATAA
1 ATGGAATTCATAGCTTGATTAAAAAGTTAACGATATCCTCTCATTGGCATTGTGTAGATTCATAA
*
32231482 ATATGAAACA-T-GACCACAGTTTGCTCTTGTT-TTCAAACAAGCAAGTTAACATAGTCATTTGT
66 ATATGAAA-AGTAG-CCACAATTTG--CTTGTTCTT-AAACAAGCAAGTTAACATAGTCATTTGT
* * *
32231544 TGACAGTGATCGTATTAATCATTAAGAAGACACAATGGTGACAATGAGATAAAATAGGATTGTAT
126 TGACAGTGATCATATTAATCATTAAGAAGACACAATGGTGACAATGAGAAAAAATAAGATTGTAT
* *
32231609 TGAGTGAATGGATTTAACTAAAAGGAATCTATGATATCATATGAGGGTA
191 TGAGTGAACGGATTTAACTAAAAGGAATCAATGATATCATATGAGGGTA
32231658 ACACACATAT
Statistics
Matches: 216, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
247 1 0.00
248 76 0.35
249 3 0.01
250 136 0.63
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.33
Consensus pattern (248 bp):
ATGGAATTCATAGCTTGATTAAAAAGTTAACGATATCCTCTCATTGGCATTGTGTAGATTCATAA
ATATGAAAAGTAGCCACAATTTGCTTGTTCTTAAACAAGCAAGTTAACATAGTCATTTGTTGACA
GTGATCATATTAATCATTAAGAAGACACAATGGTGACAATGAGAAAAAATAAGATTGTATTGAGT
GAACGGATTTAACTAAAAGGAATCAATGATATCATATGAGGGTATTAGCAATG
Found at i:32232590 original size:68 final size:72
Alignment explanation
Indices: 32232511--32232648 Score: 194
Period size: 72 Copynumber: 2.0 Consensus size: 72
32232501 TTTAATAGTT
* *
32232511 TTAATATTAAATTTAATTTAATACTTATC-T-TA-AT-AGTATTTTATTAATTTACTATTAAAGT
1 TTAATATTAAATTTAATTTAATACTTATCTTGTAGATAAGTATTATATTAATTTAATATTAAAGT
32232572 AATTATC
66 AATTATC
* * *
32232579 TTAATATTAAATTTAGTTTAATATTTATCTTGTAGATAAGTATTATATTATTTTAATATTAAAGT
1 TTAATATTAAATTTAATTTAATACTTATCTTGTAGATAAGTATTATATTAATTTAATATTAAAGT
*
32232644 GATTA
66 AATTA
32232649 AGTTTAATCA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
68 27 0.45
69 1 0.02
70 2 0.03
71 2 0.03
72 28 0.47
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.51
Consensus pattern (72 bp):
TTAATATTAAATTTAATTTAATACTTATCTTGTAGATAAGTATTATATTAATTTAATATTAAAGT
AATTATC
Found at i:32233991 original size:19 final size:19
Alignment explanation
Indices: 32233967--32234003 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
32233957 CATGATTCTA
32233967 GGTTACATGCTACCGATTG
1 GGTTACATGCTACCGATTG
32233986 GGTTACATGCTACCGATT
1 GGTTACATGCTACCGATT
32234004 TATGCATGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (19 bp):
GGTTACATGCTACCGATTG
Found at i:32235641 original size:38 final size:38
Alignment explanation
Indices: 32235549--32235646 Score: 94
Period size: 38 Copynumber: 2.7 Consensus size: 38
32235539 CCTCTTTCGA
* * *
32235549 GGTGTCACTTTGTAAAGCCTATAG---ACCATTATCAT
1 GGTGTCACTTCGAAAAGCCAATAGATAACCATTATCAT
* * * *
32235584 GGTGTTACTTTGAAGAGCCAATAGATAACCATTTTCAT
1 GGTGTCACTTCGAAAAGCCAATAGATAACCATTATCAT
* *
32235622 GGTGTCGCTTCGAAAAGCCAGTAGA
1 GGTGTCACTTCGAAAAGCCAATAGA
32235647 CTATTTCGAC
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
35 20 0.40
38 30 0.60
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (38 bp):
GGTGTCACTTCGAAAAGCCAATAGATAACCATTATCAT
Found at i:32259269 original size:16 final size:15
Alignment explanation
Indices: 32259234--32259265 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
32259224 GTTGATATGG
32259234 ATTAAAAAAACACCA
1 ATTAAAAAAACACCA
32259249 ATTAAAAAAA-ACCA
1 ATTAAAAAAACACCA
32259263 ATT
1 ATT
32259266 TTAACTTGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.66, C:0.16, G:0.00, T:0.19
Consensus pattern (15 bp):
ATTAAAAAAACACCA
Found at i:32260280 original size:78 final size:78
Alignment explanation
Indices: 32260151--32260318 Score: 309
Period size: 78 Copynumber: 2.2 Consensus size: 78
32260141 CCAATGTGAA
* *
32260151 GCTGTCACTTGAGGATTATTATTACAATCGGTAGAAATTGTCCTCAAATAGTTCCTCATCCAACT
1 GCTGTCACCTGAGGATTATTATTACAATCGATAGAAATTGTCCTCAAATAGTTCCTCATCCAACT
32260216 TATGTTTGTATCC
66 TATGTTTGTATCC
32260229 GCTGTCACCTGAGGATTATTATTACAATCGATAGAAATTGTCCTCAAATAGTTCCTCATCCAACT
1 GCTGTCACCTGAGGATTATTATTACAATCGATAGAAATTGTCCTCAAATAGTTCCTCATCCAACT
32260294 TATGTTTGTATCC
66 TATGTTTGTATCC
*
32260307 GCTATCACCTGA
1 GCTGTCACCTGA
32260319 ACACTATTAT
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 87 1.00
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (78 bp):
GCTGTCACCTGAGGATTATTATTACAATCGATAGAAATTGTCCTCAAATAGTTCCTCATCCAACT
TATGTTTGTATCC
Found at i:32268562 original size:3 final size:3
Alignment explanation
Indices: 32268554--32268584 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
32268544 GGGGGAAAGC
32268554 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
32268585 CTTTTTTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:32269669 original size:18 final size:18
Alignment explanation
Indices: 32269646--32269685 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
32269636 ATTTTTACGG
*
32269646 TATTTAGAAATATTAAAA
1 TATTTAAAAATATTAAAA
*
32269664 TATTTAAAAATATTGAAA
1 TATTTAAAAATATTAAAA
32269682 TATT
1 TATT
32269686 AATCTCAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
TATTTAAAAATATTAAAA
Found at i:32269823 original size:19 final size:19
Alignment explanation
Indices: 32269779--32269829 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
32269769 TTATGATTTT
* *
32269779 ATTTAAATAATAAATTTTA
1 ATTTTAATAATAAATTTAA
**
32269798 ACCTTAATAATAAATTTAA
1 ATTTTAATAATAAATTTAA
32269817 ATTTTAAGTAATA
1 ATTTTAA-TAATA
32269830 TTCTTAATAT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 20 0.80
20 5 0.20
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (19 bp):
ATTTTAATAATAAATTTAA
Found at i:32273042 original size:107 final size:107
Alignment explanation
Indices: 32272856--32273063 Score: 353
Period size: 107 Copynumber: 1.9 Consensus size: 107
32272846 TTTTAAGAGG
* * *
32272856 ATATTTGGCTATTTAGTCGAACGAGAAATTGAAACCCAGCACGTTAGGGCACATTTTCTCGAATT
1 ATATTTGGCTATTTAGTCAAACGAGAAATCGAAACCCAGCACGTTAAGGCACATTTTCTCGAATT
*
32272921 TTCAAACGCAAAATATTGCCTTATTTAGAAAATCTTAAAAGA
66 TCCAAACGCAAAATATTGCCTTATTTAGAAAATCTTAAAAGA
* *
32272963 ATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAAGGCACGTTTTCTCGAATT
1 ATATTTGGCTATTTAGTCAAACGAGAAATCGAAACCCAGCACGTTAAGGCACATTTTCTCGAATT
*
32273028 TCCAAACGCGAAATATTGCCTTATTTAGAAAATCTT
66 TCCAAACGCAAAATATTGCCTTATTTAGAAAATCTT
32273064 TTTGAATAGT
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
107 94 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (107 bp):
ATATTTGGCTATTTAGTCAAACGAGAAATCGAAACCCAGCACGTTAAGGCACATTTTCTCGAATT
TCCAAACGCAAAATATTGCCTTATTTAGAAAATCTTAAAAGA
Found at i:32274837 original size:24 final size:24
Alignment explanation
Indices: 32274810--32274858 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
32274800 AGTAAAAGAT
32274810 TTTTAATCAACCTTTTCAAATTTC
1 TTTTAATCAACCTTTTCAAATTTC
*
32274834 TTTTAATTAACCTTTTCAAATTTC
1 TTTTAATCAACCTTTTCAAATTTC
32274858 T
1 T
32274859 GTTCTGCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53
Consensus pattern (24 bp):
TTTTAATCAACCTTTTCAAATTTC
Found at i:32275502 original size:40 final size:40
Alignment explanation
Indices: 32275467--32275738 Score: 420
Period size: 40 Copynumber: 6.8 Consensus size: 40
32275457 GTTGATTTCG
*
32275467 TCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
*
32275507 TCTGCTCCACTACTGCTTAGGGAGATAAGATTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* *
32275547 TCTGCTTCACTACTGCTTAGGGAGGTAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * *
32275587 TCTGCTCCACTACTGCTTAGGGAGATAAGATATGTGGTTCTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGATGC-GA
*
32275629 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
*
32275669 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAGGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
*
32275709 TCTGCTCCACTACTACTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
32275739 TCTGTGGTTC
Statistics
Matches: 211, Mismatches: 17, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
39 1 0.00
40 173 0.82
41 2 0.01
42 34 0.16
43 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
Found at i:32275671 original size:122 final size:123
Alignment explanation
Indices: 32275467--32275754 Score: 458
Period size: 122 Copynumber: 2.4 Consensus size: 123
32275457 GTTGATTTCG
* * *
32275467 TCTGCTCCACTATTGCTTAGGGAGATAAGA-CT-TGATGC-GATCTGCTCCACTACTGCTTAGGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTGATCTGCTCCACTACTGCTTAGGG
* * * *
32275529 AGATAAGATTTGATGCGATCTGCTTCACTACTGCTTAGGGAGGTAAGACTTGATGCGA
66 AGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAGGCGA
*
32275587 TCTGCTCCACTACTGCTTAGGGAGATAAGATATGTGGTTCTG-TCTGCTCCACTACTGCTTAGGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTGATCTGCTCCACTACTGCTTAGGG
*
32275651 AGATAAGACTTGATGTGATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAGGCGA
66 AGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAGGCGA
*
32275709 TCTGCTCCACTACTACTTAGGGAGATAAGATCTGTGGTTCTGATCT
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTGATCT
32275755 ATCCCACTGT
Statistics
Matches: 153, Mismatches: 11, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
120 29 0.19
121 1 0.01
122 119 0.78
123 4 0.03
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (123 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTGATCTGCTCCACTACTGCTTAGGG
AGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAGGCGA
Found at i:32287687 original size:36 final size:36
Alignment explanation
Indices: 32287642--32287714 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
32287632 GTGTTATATG
*
32287642 ATTATTTTAGATTTTGGGAGTCTCGTGGTGGCTTTT
1 ATTATTTTAGATTCTGGGAGTCTCGTGGTGGCTTTT
32287678 ATTATTTTAGATTCTGGGAGTCTCGTGGTGGCTTTT
1 ATTATTTTAGATTCTGGGAGTCTCGTGGTGGCTTTT
32287714 A
1 A
32287715 CATCGAAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.15, C:0.10, G:0.27, T:0.48
Consensus pattern (36 bp):
ATTATTTTAGATTCTGGGAGTCTCGTGGTGGCTTTT
Found at i:32290035 original size:35 final size:35
Alignment explanation
Indices: 32289961--32290142 Score: 157
Period size: 35 Copynumber: 5.1 Consensus size: 35
32289951 TACTTACTTG
* * * *
32289961 TATGGCCGAATACACATGGTTCATTATATCATCACA
1 TATGGCCGAATATACA-AGTTCAATATAACATCACA
* * *
32289997 TATGGCCGAATATACAAGTACAATATATCATCATA
1 TATGGCCGAATATACAAGTTCAATATAACATCACA
* * *
32290032 TATGACCGAATATATAAGTTCAATAAAACATCACA
1 TATGGCCGAATATACAAGTTCAATATAACATCACA
* * * *
32290067 TATAGTCGAATATTCAAGTTTAATATAACATCACA
1 TATGGCCGAATATACAAGTTCAATATAACATCACA
* * * * * *
32290102 TGTGGCCAAATATATATAAGTTGAATACATCATCACA
1 TATGGCC-GA-ATATACAAGTTCAATATAACATCACA
32290139 TATG
1 TATG
32290143 TACATACCTA
Statistics
Matches: 116, Mismatches: 28, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
35 76 0.66
36 16 0.14
37 24 0.21
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (35 bp):
TATGGCCGAATATACAAGTTCAATATAACATCACA
Found at i:32290092 original size:70 final size:72
Alignment explanation
Indices: 32289990--32290141 Score: 173
Period size: 70 Copynumber: 2.1 Consensus size: 72
32289980 TTCATTATAT
* * * *
32289990 CATCACATATGGCCGAATATACAAGTACAATATATCATCATATATGACC-GA-ATATATAAGTTC
1 CATCACATATAGCCGAATATACAAGTACAATATAACATCACATATGACCAAATATATATAAGTTC
32290053 AATAAAA
66 AATAAAA
* * ** * * *
32290060 CATCACATATAGTCGAATATTCAAGTTTAATATAACATCACATGTGGCCAAATATATATAAGTTG
1 CATCACATATAGCCGAATATACAAGTACAATATAACATCACATATGACCAAATATATATAAGTTC
* *
32290125 AATACAT
66 AATAAAA
32290132 CATCACATAT
1 CATCACATAT
32290142 GTACATACCT
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
70 40 0.60
71 1 0.01
72 26 0.39
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (72 bp):
CATCACATATAGCCGAATATACAAGTACAATATAACATCACATATGACCAAATATATATAAGTTC
AATAAAA
Found at i:32296133 original size:18 final size:19
Alignment explanation
Indices: 32296107--32296142 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
32296097 TAAACTAAAT
*
32296107 TTAACTCCCT-AATTTCAC
1 TTAAATCCCTGAATTTCAC
32296125 TTAAATCCCTGAATTTCA
1 TTAAATCCCTGAATTTCA
32296143 AAATTTTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.39
Consensus pattern (19 bp):
TTAAATCCCTGAATTTCAC
Found at i:32303335 original size:21 final size:21
Alignment explanation
Indices: 32303311--32303357 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
32303301 GGGCACGAGG
32303311 TGATCAAAGTGGCCCAAATGT
1 TGATCAAAGTGGCCCAAATGT
* * *
32303332 TGATCAAATTGGGCCATATGT
1 TGATCAAAGTGGCCCAAATGT
32303353 TGATC
1 TGATC
32303358 TTGTTGTACC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (21 bp):
TGATCAAAGTGGCCCAAATGT
Found at i:32304631 original size:44 final size:41
Alignment explanation
Indices: 32304583--32304699 Score: 162
Period size: 44 Copynumber: 2.8 Consensus size: 41
32304573 GATAACAAAC
*
32304583 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG---CCAAT
* *
32304627 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAT
* *
32304668 CCTATCTCCCTGAAGTTGCAGTGGAGCGGATT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
32304700 AAAATGATGA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
41 33 0.49
44 34 0.51
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.29
Consensus pattern (41 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAT
Found at i:32304686 original size:41 final size:42
Alignment explanation
Indices: 32304585--32304699 Score: 160
Period size: 41 Copynumber: 2.7 Consensus size: 42
32304575 TAACAAACCT
* *
32304585 TATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--ACCAATCC
* *
32304629 TATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG-CTAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACCAATCC
*
32304670 TATCTCCCTGAAGTTGCAGTGGAGCGGATT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT
32304700 AAAATGATGA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
41 33 0.51
44 32 0.49
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (42 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACCAATCC
Found at i:32304728 original size:44 final size:41
Alignment explanation
Indices: 32304585--32304733 Score: 156
Period size: 44 Copynumber: 3.5 Consensus size: 41
32304575 TAACAAACCT
* * *
32304585 TATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAT---AATCC
* * *
32304629 TATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAATCC
*
32304670 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATGATGAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAA-GAT-AATCC
*
32304714 TATAC-CTCTGAAGTTGCAGT
1 TAT-CTCCCTGAAGTTGCAGT
32304734 AGATCAAATT
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
41 32 0.35
42 2 0.02
43 2 0.02
44 55 0.60
45 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (41 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAATCC
Found at i:32304923 original size:44 final size:41
Alignment explanation
Indices: 32304819--32304928 Score: 123
Period size: 41 Copynumber: 2.6 Consensus size: 41
32304809 TACCATAGCA
* * * *
32304819 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAT
*
32304860 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATGAT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAA-GAT
*
32304903 GAATCCTATAC-CTCTGAAGTTGCAGT
1 -AATCCTAT-CTCCCTGAAGTTGCAGT
32304929 AGATCAAATT
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 32 0.54
42 2 0.03
43 2 0.03
44 22 0.37
45 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (41 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAT
Found at i:32304956 original size:195 final size:195
Alignment explanation
Indices: 32304624--32305053 Score: 851
Period size: 195 Copynumber: 2.2 Consensus size: 195
32304614 TGAAGATACC
32304624 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTAATCCTATCTCCCTGAAGTTGCAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTAATCCTATCTCCCTGAAGTTGCAG
32304689 TGGAGCGGATTAAAATGATGAATCCTATACCTCTGAAGTTGCAGTAGATCAAATTAAATCTATCA
66 TGGAGCGGATTAAAATGATGAATCCTATACCTCTGAAGTTGCAGTAGATCAAATTAAATCTATCA
32304754 TAACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGTAGATAGCAGATCTTACCATAGCA
131 TAACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGTAGATAGCAGATCTTACCATAGCA
32304819 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTAATCCTATCTCCCTGAAGTTGCAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTAATCCTATCTCCCTGAAGTTGCAG
32304884 TGGAGCGGATTAAAATGATGAATCCTATACCTCTGAAGTTGCAGTAGATCAAATTAAATCTATCA
66 TGGAGCGGATTAAAATGATGAATCCTATACCTCTGAAGTTGCAGTAGATCAAATTAAATCTATCA
32304949 TAACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGTAGATAGCAGATCTTACCATAGCA
131 TAACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGTAGATAGCAGATCTTACCATAGCA
*
32305014 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGC
32305054 CAACAAGTCT
Statistics
Matches: 234, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
195 234 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (195 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTAATCCTATCTCCCTGAAGTTGCAG
TGGAGCGGATTAAAATGATGAATCCTATACCTCTGAAGTTGCAGTAGATCAAATTAAATCTATCA
TAACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGTAGATAGCAGATCTTACCATAGCA
Found at i:32305085 original size:45 final size:45
Alignment explanation
Indices: 32305016--32305189 Score: 170
Period size: 45 Copynumber: 3.8 Consensus size: 45
32305006 CCATAGCAAA
*
32305016 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCAACAAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAAGCCAACAAG
* * * *** *
32305061 TCTTATCTCCCTAAAATTGTAGTGGAATAGACTGTAGATAGTGGATAA-
1 TCTTATCTCCCTAAAGTTGCAGTGGAGTAGA-T-TA-A-AGCCAACAAG
*** *
32305109 TCTTATCTTGTTAAAGTTGCAATGGAGTAGATTAAAGCCAACAAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAAGCCAACAAG
* * *
32305154 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAA
32305190 ATGATGGATC
Statistics
Matches: 98, Mismatches: 26, Indels: 10
0.73 0.19 0.07
Matches are distributed among these distances:
44 5 0.05
45 57 0.58
46 3 0.03
47 3 0.03
48 25 0.26
49 5 0.05
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (45 bp):
TCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAAGCCAACAAG
Found at i:32305337 original size:45 final size:45
Alignment explanation
Indices: 32305271--32305672 Score: 164
Period size: 45 Copynumber: 8.8 Consensus size: 45
32305261 AAGCTACAAG
* * * * *
32305271 TCTTGTCTCACTGAGGTTGCAGTAGAGTAGACTAAAGATAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATAGCAGA
* * * ** *
32305316 TCTTATCTCTCTGAAGTTGCAGTAAAGCAGATCACACCATAACA-A
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTA-AAGATAGCAGA
* * * **
32305361 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTA-A
1 -TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATAGCAGA
* * *
32305406 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAA-AT-G-ATGTA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATAGCA-G-A
* * * ** *
32305450 TCATATAC-CTCTGAAGTTGCAGTAG-GTCGGATTAAATCTACCATAACGA
1 TCTTAT-CTCCCTGAAGTTGCAGTAGAG-CAGATTAAAGATAGC---A-GA
** * * * *
32305499 GTCTTATCTCTTTGAAGTTGCAGTGGAGTAGACTGAAGATAGC-GAA
1 -TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATAGCAG-A
* * * *
32305545 TCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATTACCA-A
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAG------A-TAGCAGA
* * * * *
32305596 TCTTATCTCTCTGAAGTTGCAATAGAGCAGATCATA-ACA--AG-
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATAGCAGA
* *
32305637 TCTAATCTCCCTGAAGTTGCAATAGAGCAGATTAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAA
32305673 ACCACGAATT
Statistics
Matches: 270, Mismatches: 61, Indels: 56
0.70 0.16 0.14
Matches are distributed among these distances:
41 34 0.13
43 3 0.01
44 64 0.24
45 66 0.24
46 36 0.13
49 2 0.01
50 30 0.11
51 32 0.12
52 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATAGCAGA
Found at i:32306407 original size:20 final size:20
Alignment explanation
Indices: 32306377--32306420 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
32306367 TGTTCTTGAG
32306377 TTTTTATTTATTTTACTTTT
1 TTTTTATTTATTTTACTTTT
32306397 ATTTTTA-TTATTTTACTTTT
1 -TTTTTATTTATTTTACTTTT
32306417 TTTT
1 TTTT
32306421 AGTTTTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 4 0.17
20 13 0.57
21 6 0.26
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTTATTTATTTTACTTTT
Found at i:32307245 original size:21 final size:22
Alignment explanation
Indices: 32307205--32307246 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
32307195 TTTGTTATAT
*
32307205 ATATACATGCATACATTTTTACA
1 ATATAAATGCATA-ATTTTTACA
32307228 ATATAAATGCAT-ATTTTTA
1 ATATAAATGCATAATTTTTA
32307247 TAATTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
23 11 0.61
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.43
Consensus pattern (22 bp):
ATATAAATGCATAATTTTTACA
Found at i:32308491 original size:22 final size:23
Alignment explanation
Indices: 32308466--32308509 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
32308456 ATATATATAT
32308466 GAAAATATTC-ATTTAAAAAAAG
1 GAAAATATTCGATTTAAAAAAAG
*
32308488 GAAAATATTCGTTTTAAAAAAA
1 GAAAATATTCGATTTAAAAAAA
32308510 ATATATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (23 bp):
GAAAATATTCGATTTAAAAAAAG
Found at i:32309285 original size:19 final size:19
Alignment explanation
Indices: 32309261--32309392 Score: 219
Period size: 19 Copynumber: 6.8 Consensus size: 19
32309251 AATCATATAT
32309261 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
32309280 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
32309299 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
32309318 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
32309339 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
32309358 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
32309377 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
32309393 CTCAAAAATT
Statistics
Matches: 105, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
19 86 0.82
21 19 0.18
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:32309345 original size:59 final size:59
Alignment explanation
Indices: 32309254--32309391 Score: 221
Period size: 59 Copynumber: 2.4 Consensus size: 59
32309244 ATTACAAAAT
*
32309254 CATAT-AT-TCTAAGATTGC--ATATCATATCTAAGATTATATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
* *
32309309 CATATCATATCTAAGATTGCATATATCATATCTAAGATTGCATATCATATCTAGGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
32309368 CATATCATATCTAAGATTGCATAT
1 CATATCATATCTAAGATTGCATAT
32309392 CCTCAAAAAT
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 11 0.14
59 58 0.76
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (59 bp):
CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
Found at i:32309718 original size:44 final size:42
Alignment explanation
Indices: 32309577--32310159 Score: 376
Period size: 44 Copynumber: 13.5 Consensus size: 42
32309567 CAGTCTGCCT
* * * * *
32309577 CACTGCAACTTCA-GGATGATAAGACTTGCTTATTTAGTCTACTT
1 CACTGCAACTTCAGGGA-GATAAGACTAG-GT-TTTAATCTGCTC
* ***
32309621 CACTGCAACTTCAGGGAGATAAGACTA-GATGCGATCTGCT-
1 CACTGCAACTTCAGGGAGATAAGACTAGGTTTTAATCTGCTC
* * * *
32309661 CTCTACAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTC
1 CACTGCAACTTCAGGGAGATAAGA-CT-AGGTTTTAATCTGCTC
* * *
32309705 CACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTC
1 CACTGCAACTTCAGGGAGATAAGACTA--GGTTTTAATCTGCTC
* * * * *
32309749 CACTGCAACTTGAGGGAGATAAGACTTGCCATCTTCAGTCTG-TCC
1 CACTGCAACTTCAGGGAGATAAGACTAG--GT-TTTAATCTGCT-C
* * * *
32309794 CACTGCAACTTGA-GGAGGATAAGACTTGCTTACTTAGTCTGCTC
1 CACTGCAACTTCAGGGA-GATAAGACTAGGTT--TTAATCTGCTC
* ***
32309838 CACTGCAACTTCAGGGAGATAAGACTA-GATGCGATCTGCT-
1 CACTGCAACTTCAGGGAGATAAGACTAGGTTTTAATCTGCTC
* * * *
32309878 CTCTACAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTC
1 CACTGCAACTTCAGGGAGATAAGA-CT-AGGTTTTAATCTGCTC
* * *
32309922 CACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTC
1 CACTGCAACTTCAGGGAGATAAGACTA--GGTTTTAATCTGCTC
* * * * * *
32309966 CACTGCAACTTGAGGGAGATAAGACTTGCCATCTTCAGTCTGCCC
1 CACTGCAACTTCAGGGAGATAAGACTAG--GT-TTTAATCTGCTC
* * * *
32310011 CACTGCAACTTGA-GGAGGATAAGACTTGCTTACTTAGTCTGCTC
1 CACTGCAACTTCAGGGA-GATAAGACTAGGTT--TTAATCTGCTC
* ***
32310055 CACTGCAACTTCAGGGAGATAAGACTA-GATGCGATCTGCT-
1 CACTGCAACTTCAGGGAGATAAGACTAGGTTTTAATCTGCTC
* * **
32310095 CTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTC
1 CACTGCAACTTCAGGGAGATAAGA-CT-AGGTTTTAATCTGCTC
32310139 CACTGCAACTTCAGGGAGATA
1 CACTGCAACTTCAGGGAGATA
32310160 GGATATACAA
Statistics
Matches: 420, Mismatches: 86, Indels: 66
0.73 0.15 0.12
Matches are distributed among these distances:
40 64 0.15
41 24 0.06
42 9 0.02
43 29 0.07
44 219 0.52
45 75 0.18
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (42 bp):
CACTGCAACTTCAGGGAGATAAGACTAGGTTTTAATCTGCTC
Found at i:32309835 original size:89 final size:88
Alignment explanation
Indices: 32309568--32310080 Score: 318
Period size: 89 Copynumber: 5.9 Consensus size: 88
32309558 TGCCATCTTC
* * * * *
32309568 AGTCTGC-CTCACTGCAACTTCA-GGATGATAAGACTTGCTTATTTAGTCTACTTCACTGCAACT
1 AGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCATCTTCAGTCTGCTCCACTGCAACT
* * * *
32309631 TCAGGGAGATAAGACTAG-ATGC-G
64 TCAGGGAGATAAGACTTGCTTACTT
* * * * * * * *
32309654 A-TCTGCT-CTCTACAACTTCAGAGAGATAAGATCTAAG-GT-TTTAATCCGCTCCACTGCAACT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCATCTTCAGTCTGCTCCACTGCAACT
* *
32309715 TCAGGGAGATAGGATTATCGGC-T--TT
64 TCAGGGAGATAAGACT-T--GCTTACTT
* *
32309740 AATCTGCTCCACTGCAACTTGAGGGAGATAAGACTTGCCATCTTCAGTCTG-TCCCACTGCAACT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-CATCTTCAGTCTGCT-CCACTGCAACT
*
32309804 TGA-GGAGGATAAGACTTGCTTACTT
64 TCAGGGA-GATAAGACTTGCTTACTT
* * * *
32309829 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAG-A--TGC-GATCTGCT-CTCTACAACTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCATCTTCAG-TCTGCTCCACTGCAACTT
* * *
32309889 CAGAGAGATAAGATCTAAGGTT--TT
65 CAGGGAGATAAGA-CT-TGCTTACTT
* * * * ** * *
32309913 AATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTATCGGCTTTAATCTGCTCCACTGCAACTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GCATCTTCAGTCTGCTCCACTGCAACTT
* *
32309977 GAGGGAGATAAGACTTGC-CATCTT
65 CAGGGAGATAAGACTTGCTTA-CTT
* * *
32310001 CAGTCTGCCCCACTGCAACTTGA-GGAGGATAAGACTTGCTTACTT-AGTCTGCTCCACTGCAAC
1 -AGTCTGCTCCACTGCAACTTCAGGGA-GATAAGACTTGCAT-CTTCAGTCTGCTCCACTGCAAC
32310064 TTCAGGGAGATAAGACT
63 TTCAGGGAGATAAGACT
32310081 AGATGCGATC
Statistics
Matches: 329, Mismatches: 61, Indels: 71
0.71 0.13 0.15
Matches are distributed among these distances:
83 1 0.00
84 100 0.30
85 20 0.06
86 11 0.03
87 21 0.06
88 51 0.16
89 120 0.36
90 5 0.02
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (88 bp):
AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCATCTTCAGTCTGCTCCACTGCAACTTC
AGGGAGATAAGACTTGCTTACTT
Found at i:32309889 original size:173 final size:173
Alignment explanation
Indices: 32309710--32310036 Score: 414
Period size: 173 Copynumber: 1.9 Consensus size: 173
32309700 CGCTCCACTG
* * * * *
32309710 CAACTTCAGGGAGATAGGAT-TATCGGCTTTAATCTGCTCCACTGCAACTTGAGGGAGATAAGAC
1 CAACTTCAGAGAGATAAGATCTA-AGGCTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGA-
* * * *
32309774 TTGCCATCTTCAGTCTG-TCCCACTGCAACTTGA-GGAGGATAAGACTTG-CTTACTT-AGTCTG
64 TTACCAGCTTCAATCTGCT-CCACTGCAACTTGAGGGA-GATAAGACTTGCCAT-CTTCAGTCTG
*
32309835 CTCCACTGCAACTTCAGG-GAGATAAGACTAGATGCGATCTGCTCTCTA
126 CCCCACTGCAACTTCAGGAG-GATAAGACTAGATGCGATCTGCTCTCTA
* *
32309883 CAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTAAGGCTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATT
* * *
32309948 ATCGGCTTTAATCTGCTCCACTGCAACTTGAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCCA
66 ACCAGCTTCAATCTGCTCCACTGCAACTTGAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCCA
*
32310013 CTGCAACTTGAGGAGGATAAGACT
131 CTGCAACTTCAGGAGGATAAGACT
32310037 TGCTTACTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
172 39 0.30
173 90 0.68
174 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (173 bp):
CAACTTCAGAGAGATAAGATCTAAGGCTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATT
ACCAGCTTCAATCTGCTCCACTGCAACTTGAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCCA
CTGCAACTTCAGGAGGATAAGACTAGATGCGATCTGCTCTCTA
Found at i:32310201 original size:217 final size:217
Alignment explanation
Indices: 32309558--32310163 Score: 1131
Period size: 217 Copynumber: 2.8 Consensus size: 217
32309548 TAGGAATTAG
* * * * * *
32309558 TGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGATGATAAGACTTGCTTATTTAGTCTACTTCA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTGAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
32309623 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCT
66 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCT
32309688 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACT
131 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACT
32309753 GCAACTTGAGGGAGATAAGACT
196 GCAACTTGAGGGAGATAAGACT
*
32309775 TGCCATCTTCAGTCTGTCCCACTGCAACTTGAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTGAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
32309840 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCT
66 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCT
32309905 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACT
131 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACT
32309970 GCAACTTGAGGGAGATAAGACT
196 GCAACTTGAGGGAGATAAGACT
32309992 TGCCATCTTCAGTCTGCCCCACTGCAACTTGAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTGAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
*
32310057 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCT
66 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCT
*
32310122 AAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGAT
131 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGAT
32310164 ATACAATCTT
Statistics
Matches: 379, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
217 379 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (217 bp):
TGCCATCTTCAGTCTGCCCCACTGCAACTTGAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCT
AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACT
GCAACTTGAGGGAGATAAGACT
Found at i:32310287 original size:132 final size:132
Alignment explanation
Indices: 32310151--32310407 Score: 478
Period size: 132 Copynumber: 1.9 Consensus size: 132
32310141 CTGCAACTTC
* *
32310151 AGGGAGATAGGATATACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATATACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
32310216 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
32310281 TT
131 TT
*
32310283 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATATACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
*
32310348 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACT
32310408 GTCAATGCAG
Statistics
Matches: 121, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 121 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (132 bp):
AGGGAGATAAGATATACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
TT
Found at i:32311671 original size:6 final size:6
Alignment explanation
Indices: 32311671--32311703 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
32311661 TTTTTTGTTT
32311671 TTTTTG TTTTTG TTTTTG -TTTT- TTTTTG TTTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
32311704 TTTAATCTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 8 0.32
6 17 0.68
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (6 bp):
TTTTTG
Found at i:32311674 original size:9 final size:10
Alignment explanation
Indices: 32311660--32311706 Score: 69
Period size: 10 Copynumber: 4.6 Consensus size: 10
32311650 TTTCTTTCAC
32311660 TTTTTTTG-T
1 TTTTTTTGTT
32311669 TTTTTTTGTTT
1 TTTTTTTG-TT
32311680 TTGTTTTTGTT
1 TT-TTTTTGTT
32311691 TTTTTTTGTT
1 TTTTTTTGTT
32311701 TTTTTT
1 TTTTTT
32311707 AATCTGAACT
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.23
10 14 0.40
11 7 0.20
12 6 0.17
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:32311686 original size:22 final size:22
Alignment explanation
Indices: 32311662--32311703 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
32311652 TCTTTCACTT
32311662 TTTTTG-TTTTTTTTGTTTTTG
1 TTTTTGTTTTTTTTTGTTTTTG
32311683 TTTTTGTTTTTTTTTGTTTTT
1 TTTTTGTTTTTTTTTGTTTTT
32311704 TTTAATCTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (22 bp):
TTTTTGTTTTTTTTTGTTTTTG
Found at i:32316358 original size:98 final size:98
Alignment explanation
Indices: 32316189--32316383 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
32316179 ATACAATAAA
*
32316189 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
32316254 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
* *
32316287 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
*
32316352 CCTTTAGAATCTCAAACTCGGAATATTTCCTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTT
32316384 CATGATTTTT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:32317252 original size:19 final size:19
Alignment explanation
Indices: 32317228--32317359 Score: 210
Period size: 19 Copynumber: 6.8 Consensus size: 19
32317218 AATCATATAT
32317228 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
32317247 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
32317266 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
32317285 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
*
32317306 TCTAAGATTGCTTATCATA
1 TCTAAGATTGCATATCATA
*
32317325 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
32317344 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
32317360 CTCAAAAATT
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
19 84 0.82
21 19 0.18
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:32317312 original size:59 final size:59
Alignment explanation
Indices: 32317221--32317358 Score: 214
Period size: 59 Copynumber: 2.4 Consensus size: 59
32317211 ATTACAAAAT
32317221 CATAT-AT-TCTAAGATTGC--ATATCATATCTAAGATT-ATATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTGAT-TATCATATCTAAGATTG
* *
32317276 CATATCATATCTAAGATTGCATATATCATATCTAAGATTGCTTATCATATCTAGGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTGATTATCATATCTAAGATTG
32317335 CATATCATATCTAAGATTGCATAT
1 CATATCATATCTAAGATTGCATAT
32317359 CCTCAAAAAT
Statistics
Matches: 76, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 11 0.14
59 57 0.75
60 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.39
Consensus pattern (59 bp):
CATATCATATCTAAGATTGCATATATCATATCTAAGATTGATTATCATATCTAAGATTG
Found at i:32321567 original size:72 final size:72
Alignment explanation
Indices: 32321416--32321916 Score: 435
Period size: 72 Copynumber: 6.9 Consensus size: 72
32321406 TAGAAAAAAA
* * * * * * * *
32321416 TTGCCTTAGACGTGTTTATTCCAACATTTTT-AAGATTGCCTTA-A-ACAGGTTTATCTCAACCT
1 TTGCCTTAGACGGGTCTATCCCAACCTTTTTAAAGGTTGTCTTAGATA-AGGTCTATCCCAACCT
*
32321478 TTTAAAGG
65 TTTTAAGG
* * * *
32321486 CTGCCTTAGACGGGTCTATCCCAACCTGTTTAAAGGTTTTCTTAGATAAGGTATATCCCAACCTT
1 TTGCCTTAGACGGGTCTATCCCAACCTTTTTAAAGGTTGTCTTAGATAAGGTCTATCCCAACCTT
32321551 TTTAAGG
66 TTTAAGG
** * * * *
32321558 TTGTATTAGACAGCTCTATCTCAACCTTTTTAAAGGTTGTCTTAGACAAGGTCTATCCCAACCTT
1 TTGCCTTAGACGGGTCTATCCCAACCTTTTTAAAGGTTGTCTTAGATAAGGTCTATCCCAACCTT
*
32321623 TTTAGGG
66 TTTAAGG
* * * * * * *
32321630 TTGCTTTAGATGTGTTTATCCCAACCTTTTTTAAGGCTTGCCTTAAATAAGGTCTATCCCAACCT
1 TTGCCTTAGACGGGTCTATCCCAACCTTTTTAAAGG-TTGTCTTAGATAAGGTCTATCCCAACCT
32321695 TTTTAAGG
65 TTTTAAGG
* * * * * * * ** *
32321703 TTGCCTTAAATGAGTCTATCCCAA-TTTTTTTAAGGTTGCCTTAGA-GAGGTCTATCTTAACATA
1 TTGCCTTAGACGGGTCTATCCCAACCTTTTTAAAGGTTGTCTTAGATAAGGTCTATCCCAACCT-
32321766 TTTTAAAGG
65 TTTT-AAGG
** * * *
32321775 TTGTTTTAGATGAGGTCTATCCCAACATTTTTTAAAGGTTATCTTAGACT--GGTCTATCCCAAC
1 TTGCCTTAGACG-GGTCTATCCCAAC-CTTTTTAAAGGTTGTCTTAGA-TAAGGTCTATCCCAAC
32321838 CTTTTTAAGG
63 CTTTTTAAGG
* * * *
32321848 TTGCCTTAAACGGGTCTATGCCAACCTTTTTCAAAGGTAGGCCTTA-ACT-AGGTCTATCCCAAC
1 TTGCCTTAGACGGGTCTATCCCAACCTTTTT-AAAGGT-TGTCTTAGA-TAAGGTCTATCCCAAC
32321911 CTTTTT
63 CTTTTT
32321917 TAAAGGTCGG
Statistics
Matches: 352, Mismatches: 65, Indels: 25
0.80 0.15 0.06
Matches are distributed among these distances:
70 38 0.11
71 27 0.08
72 154 0.44
73 99 0.28
74 4 0.01
75 30 0.09
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (72 bp):
TTGCCTTAGACGGGTCTATCCCAACCTTTTTAAAGGTTGTCTTAGATAAGGTCTATCCCAACCTT
TTTAAGG
Found at i:32321691 original size:145 final size:144
Alignment explanation
Indices: 32321435--32321923 Score: 469
Period size: 145 Copynumber: 3.4 Consensus size: 144
32321425 ACGTGTTTAT
* * * * * * * *
32321435 TCCAACATTTTT-AAGATTGCCTTAAAC-AGGTTTATCTCAACC-TTTTAAAGGCTGCCTTAGAC
1 TCCAACCTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCTTTTTAAAGGTTGCTTTAGAT
* * * * *
32321497 G-GGTCTATCCCAACCTGTTTAAAGGTTTTCTTAGATAAGGTATATCCCAACCTTTTTAAGGTTG
66 GAGGTCTATCCCAACCTTTTTTAAGGTTATCTTAAATAAGGTCTATCCCAACCTTTTTAAGGTTG
** *
32321561 TATTAGACAGCTCTA
131 CCTTAAACAG-TCTA
* *
32321576 TCTCAACCTTTTTAAAGGTTGTCTTAGACAAGGTCTATCCCAACCTTTTT-AGGGTTGCTTTAGA
1 TC-CAACCTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCTTTTTAAAGGTTGCTTTAGA
* * **
32321640 TG-TGTTTATCCCAACCTTTTTTAAGGCTTGCCTTAAATAAGGTCTATCCCAACCTTTTTAAGGT
65 TGAGGTCTATCCCAACCTTTTTTAAGG-TTATCTTAAATAAGGTCTATCCCAACCTTTTTAAGGT
*
32321704 TGCCTTAAATGAGTCTA
129 TGCCTTAAA-CAGTCTA
* * * ** * *
32321721 TCCCAA-TTTTTTTAAGGTTGCCTTAGA-GAGGTCTATCTTAACATATTTTAAAGGTTGTTTTAG
1 T-CCAACCTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCT-TTTTAAAGGTTGCTTTAG
* *
32321784 ATGAGGTCTATCCCAACATTTTTTAAAGGTTATCTTAGACT--GGTCTATCCCAACCTTTTTAAG
64 ATGAGGTCTATCCCAACCTTTTTT-AAGGTTATCTTA-AATAAGGTCTATCCCAACCTTTTTAAG
*
32321847 GTTGCCTTAAACGGGTCTA
127 GTTGCCTTAAAC-AGTCTA
* *
32321866 TGCCAACCTTTTTCAAAGGTAGGCCTTA-ACTAGGTCTATCCCAACCTTTTTTAAAGGT
1 T-CCAACCTTTTT-AAAGGT-TGCCTTAGACAAGGTCTATCCCAACC-TTTTTAAAGGT
32321924 CGGCCTTGAC
Statistics
Matches: 283, Mismatches: 47, Indels: 29
0.79 0.13 0.08
Matches are distributed among these distances:
141 2 0.01
142 9 0.03
143 25 0.09
144 67 0.24
145 108 0.38
146 31 0.11
147 12 0.04
148 28 0.10
149 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (144 bp):
TCCAACCTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCTTTTTAAAGGTTGCTTTAGAT
GAGGTCTATCCCAACCTTTTTTAAGGTTATCTTAAATAAGGTCTATCCCAACCTTTTTAAGGTTG
CCTTAAACAGTCTA
Found at i:32321922 original size:38 final size:38
Alignment explanation
Indices: 32321442--32321952 Score: 373
Period size: 35 Copynumber: 14.1 Consensus size: 38
32321432 TATTCCAACA
* * * *
32321442 TTTTT-AAGATTGCCTTAAAC-AGGTTTATCTCAACC-
1 TTTTTAAAGGTTGCCTTAGACTAGGTCTATCCCAACCT
* *
32321477 -TTTTAAAGGCTGCCTTAGAC-GGGTCTATCCCAACC-
1 TTTTTAAAGGTTGCCTTAGACTAGGTCTATCCCAACCT
* ** *
32321512 TGTTTAAAGGTTTTCTTAGA-TAAGGTATATCCCAACC-
1 TTTTTAAAGGTTGCCTTAGACT-AGGTCTATCCCAACCT
** * *
32321549 TTTTT-AAGGTTGTATTAGAC-AGCTCTATCTCAACC-
1 TTTTTAAAGGTTGCCTTAGACTAGGTCTATCCCAACCT
* *
32321584 TTTTTAAAGGTTGTCTTAGACAAGGTCTATCCCAACC-
1 TTTTTAAAGGTTGCCTTAGACTAGGTCTATCCCAACCT
* * *
32321621 TTTTT-AGGGTTGCTTTAGA-T-GTGTTTATCCCAACCT
1 TTTTTAAAGGTTGCCTTAGACTAG-GTCTATCCCAACCT
*
32321657 TTTTT-AAGGCTTGCCTTA-AATAAGGTCTATCCCAACC-
1 TTTTTAAAGG-TTGCCTTAGACT-AGGTCTATCCCAACCT
*
32321694 TTTTT-AAGGTTGCCTTA-AAT-GAGTCTATCCCAA--T
1 TTTTTAAAGGTTGCCTTAGACTAG-GTCTATCCCAACCT
* * ** *
32321728 TTTTTTAAGGTTGCCTTAGA-GAGGTCTATCTTAACAT
1 TTTTTAAAGGTTGCCTTAGACTAGGTCTATCCCAACCT
* ** *
32321765 ATTTTAAAGGTTGTTTTAGA-TGAGGTCTATCCCAACAT
1 TTTTTAAAGGTTGCCTTAGACT-AGGTCTATCCCAACCT
**
32321803 TTTTTAAAGGTTATCTTAGACT-GGTCTATCCCAACC-
1 TTTTTAAAGGTTGCCTTAGACTAGGTCTATCCCAACCT
* * *
32321839 TTTTT-AAGGTTGCCTTAAAC-GGGTCTATGCCAACCT
1 TTTTTAAAGGTTGCCTTAGACTAGGTCTATCCCAACCT
* *
32321875 TTTTCAAAGGTAGGCCTTA-ACTAGGTCTATCCCAACCT
1 TTTTTAAAGGT-TGCCTTAGACTAGGTCTATCCCAACCT
* * *
32321913 TTTTTAAAGGTCGGCCTT-GACTAGGTATTTCCCAACCT
1 TTTTTAAAGGT-TGCCTTAGACTAGGTCTATCCCAACCT
32321951 TT
1 TT
32321953 CAATAAGGGT
Statistics
Matches: 393, Mismatches: 55, Indels: 53
0.78 0.11 0.11
Matches are distributed among these distances:
34 11 0.03
35 110 0.28
36 83 0.21
37 89 0.23
38 98 0.25
39 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.38
Consensus pattern (38 bp):
TTTTTAAAGGTTGCCTTAGACTAGGTCTATCCCAACCT
Found at i:32322125 original size:26 final size:25
Alignment explanation
Indices: 32322073--32322128 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
32322063 CCTTCTAAAA
* **
32322073 TTTTTAACCATTAACCGAACCGTTT
1 TTTTTAAACATTAACCGAACCAATT
*
32322098 TTTTTAAACATTAATCGAACCAAATT
1 TTTTTAAACATTAACCGAACC-AATT
32322124 TTTTT
1 TTTTT
32322129 CAGTTAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (25 bp):
TTTTTAAACATTAACCGAACCAATT
Found at i:32322476 original size:39 final size:38
Alignment explanation
Indices: 32322395--32322509 Score: 203
Period size: 38 Copynumber: 3.0 Consensus size: 38
32322385 CTTAGAGTTA
32322395 AGACTTTAGTTTTATTTTTATTGGGTTGGTAATTGGGT
1 AGACTTTAGTTTTATTTTTATTGGGTTGGTAATTGGGT
*
32322433 AGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGGT
1 AGACTTTAGTTTTATTTTTATTGGGTT-GGTAATTGGGT
*
32322472 AGACTTTAGTTTTATTTTTATTAGGTTGGTAATTGGGT
1 AGACTTTAGTTTTATTTTTATTGGGTTGGTAATTGGGT
32322510 TGGGTAATTG
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
38 37 0.51
39 36 0.49
ACGTcount: A:0.19, C:0.03, G:0.27, T:0.51
Consensus pattern (38 bp):
AGACTTTAGTTTTATTTTTATTGGGTTGGTAATTGGGT
Done.