Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 102 of 203
Found at i:32322517 original size:13 final size:13
Alignment explanation
Indices: 32322495--32322527 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
32322485 ATTTTTATTA
32322495 GGTT-GGTAATTG
1 GGTTGGGTAATTG
32322507 GGTTGGGTAATTG
1 GGTTGGGTAATTG
32322520 GGTTGGGT
1 GGTTGGGT
32322528 TGGATAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.39
Consensus pattern (13 bp):
GGTTGGGTAATTG
Found at i:32340181 original size:10 final size:9
Alignment explanation
Indices: 32340166--32340204 Score: 51
Period size: 10 Copynumber: 4.1 Consensus size: 9
32340156 ATATATTTGT
32340166 TTTATAATTA
1 TTTAT-ATTA
*
32340176 TTTATAATA
1 TTTATATTA
32340185 TTTATATTA
1 TTTATATTA
32340194 TGTTATATTA
1 T-TTATATTA
32340204 T
1 T
32340205 AAGTTTGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 12 0.46
10 14 0.54
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTATATTA
Found at i:32341219 original size:17 final size:17
Alignment explanation
Indices: 32341186--32341220 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
32341176 ACAAAGATAG
* *
32341186 TAATTAGTGATTTTTTA
1 TAATTAGTGAATCTTTA
32341203 TAATTAGTGAATCTTTA
1 TAATTAGTGAATCTTTA
32341220 T
1 T
32341221 TGTTTTTCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.03, G:0.11, T:0.54
Consensus pattern (17 bp):
TAATTAGTGAATCTTTA
Found at i:32346712 original size:25 final size:25
Alignment explanation
Indices: 32346683--32346772 Score: 101
Period size: 25 Copynumber: 3.6 Consensus size: 25
32346673 CAACCCACAT
*
32346683 CTCGTGAGAGCATACTGATTTATAG
1 CTCGTGAGAGCATACTGATTTATAA
* * *
32346708 CTCGTGTGAGCATACCGATTTACAA
1 CTCGTGAGAGCATACTGATTTATAA
*
32346733 CTCGTGAGAGCATA-TCGTTTTATAA
1 CTCGTGAGAGCATACT-GATTTATAA
* *
32346758 CTTGTGTGAGCATAC
1 CTCGTGAGAGCATAC
32346773 ATGTACAGGA
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (25 bp):
CTCGTGAGAGCATACTGATTTATAA
Found at i:32355036 original size:124 final size:124
Alignment explanation
Indices: 32354816--32355064 Score: 426
Period size: 124 Copynumber: 2.0 Consensus size: 124
32354806 TCTAGAAACA
* *
32354816 TAATAGCTTGATGAAAGGACATGGGAAGATTGGCACCTGAGCGATATTTCCATTCACCCCTTCCT
1 TAATAGCTGGATGAAAGGACATGGGAAGATTGGCACATGAGCGATATTTCCATTCACCCCTTCCT
* * *
32354881 TCAGTTAAAAATTTTATAATGTTATCCATATCTATGTCCTGAAAATATTGTAAATTAGT
66 TCAGTTAAAAAGTTTATAATGTTATCCATATCTATGTCCTGAAAATATTCTAAATCAGT
*
32354940 TAATAGCTGGATGAAAGGACATGGGAAGATTGGTACATGAGCGATATTTCCATTCACCCCTTCCT
1 TAATAGCTGGATGAAAGGACATGGGAAGATTGGCACATGAGCGATATTTCCATTCACCCCTTCCT
* *
32355005 TCGGTTAAAAAGTTTATAATGTTATCCATATCTATGTCCTGAAACTATTCTAAATCAGT
66 TCAGTTAAAAAGTTTATAATGTTATCCATATCTATGTCCTGAAAATATTCTAAATCAGT
32355064 T
1 T
32355065 TCATCAATAA
Statistics
Matches: 117, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
124 117 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (124 bp):
TAATAGCTGGATGAAAGGACATGGGAAGATTGGCACATGAGCGATATTTCCATTCACCCCTTCCT
TCAGTTAAAAAGTTTATAATGTTATCCATATCTATGTCCTGAAAATATTCTAAATCAGT
Found at i:32358963 original size:22 final size:22
Alignment explanation
Indices: 32358933--32359018 Score: 66
Period size: 22 Copynumber: 3.7 Consensus size: 22
32358923 TCCATTTTGC
32358933 TCCCTATGTTGCAACATTGATCA
1 TCCC-ATGTTGCAACATTGATCA
* *
32358956 TCCCATGTTGCGACATAGTGACCAGTA
1 TCCCATGTTGCAACAT--TGATC---A
* * *
32358983 TCCCATGTTACGACATCGATCA
1 TCCCATGTTGCAACATTGATCA
32359005 TCCC-TGTTGCAACA
1 TCCCATGTTGCAACA
32359019 CGTAGGGACT
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
21 8 0.16
22 16 0.31
23 4 0.08
24 4 0.08
25 3 0.06
27 16 0.31
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (22 bp):
TCCCATGTTGCAACATTGATCA
Found at i:32360780 original size:20 final size:20
Alignment explanation
Indices: 32360757--32360906 Score: 144
Period size: 20 Copynumber: 7.5 Consensus size: 20
32360747 TACCGAAGTA
*
32360757 CAAATAGGGGCACGTATGTG
1 CAAACAGGGGCACGTATGTG
* *
32360777 CAAACAGGGGTAC-TGAAGTG
1 CAAACAGGGGCACGT-ATGTG
*
32360797 CAAACAGGGGCATGTATGTG
1 CAAACAGGGGCACGTATGTG
* * *
32360817 CAAACAGGGGTAC-TGAAGTA
1 CAAACAGGGGCACGT-ATGTG
*
32360837 CAAACAGCGGCACGTATGTG
1 CAAACAGGGGCACGTATGTG
* * *
32360857 CAAACAGGGGTAC-TGAAGTA
1 CAAACAGGGGCACGT-ATGTG
*
32360877 CAAACAGGGGCATGTATGTG
1 CAAACAGGGGCACGTATGTG
32360897 CAAACAGGGG
1 CAAACAGGGG
32360907 TACTAAAGTA
Statistics
Matches: 102, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
19 3 0.03
20 96 0.94
21 3 0.03
ACGTcount: A:0.34, C:0.17, G:0.33, T:0.16
Consensus pattern (20 bp):
CAAACAGGGGCACGTATGTG
Found at i:32360795 original size:40 final size:40
Alignment explanation
Indices: 32360746--32360982 Score: 312
Period size: 40 Copynumber: 5.9 Consensus size: 40
32360736 GTGTTTAGGA
* *
32360746 GTACCGAAGTACAAATAGGGGCACGTATGTGCAAACAGGG
1 GTACTGAAGTACAAACAGGGGCACGTATGTGCAAACAGGG
* *
32360786 GTACTGAAGTGCAAACAGGGGCATGTATGTGCAAACAGGG
1 GTACTGAAGTACAAACAGGGGCACGTATGTGCAAACAGGG
*
32360826 GTACTGAAGTACAAACAGCGGCACGTATGTGCAAACAGGG
1 GTACTGAAGTACAAACAGGGGCACGTATGTGCAAACAGGG
*
32360866 GTACTGAAGTACAAACAGGGGCATGTATGTGCAAACAGGG
1 GTACTGAAGTACAAACAGGGGCACGTATGTGCAAACAGGG
* * * * * * *
32360906 GTACTAAAGTACAAACATGGGCACATATATGTAAATAAGG
1 GTACTGAAGTACAAACAGGGGCACGTATGTGCAAACAGGG
** * * *
32360946 GTACCAAAGTACAGACAGGGGCATGAATGTGCAAACA
1 GTACTGAAGTACAAACAGGGGCACGTATGTGCAAACA
32360983 TTCAATAGTT
Statistics
Matches: 171, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 171 1.00
ACGTcount: A:0.37, C:0.16, G:0.30, T:0.17
Consensus pattern (40 bp):
GTACTGAAGTACAAACAGGGGCACGTATGTGCAAACAGGG
Found at i:32360920 original size:20 final size:20
Alignment explanation
Indices: 32360774--32360922 Score: 151
Period size: 20 Copynumber: 7.5 Consensus size: 20
32360764 GGGCACGTAT
32360774 GTGCAAACAGGGGTACTGAA
1 GTGCAAACAGGGGTACTGAA
* *
32360794 GTGCAAACAGGGGCA-TGTAT
1 GTGCAAACAGGGGTACTG-AA
32360814 GTGCAAACAGGGGTACTGAA
1 GTGCAAACAGGGGTACTGAA
* * * *
32360834 GTACAAACAGCGGCAC-GTAT
1 GTGCAAACAGGGGTACTG-AA
32360854 GTGCAAACAGGGGTACTGAA
1 GTGCAAACAGGGGTACTGAA
* * *
32360874 GTACAAACAGGGGCA-TGTAT
1 GTGCAAACAGGGGTACTG-AA
*
32360894 GTGCAAACAGGGGTACTAAA
1 GTGCAAACAGGGGTACTGAA
*
32360914 GTACAAACA
1 GTGCAAACA
32360923 TGGGCACATA
Statistics
Matches: 103, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
19 5 0.05
20 94 0.91
21 4 0.04
ACGTcount: A:0.36, C:0.17, G:0.31, T:0.16
Consensus pattern (20 bp):
GTGCAAACAGGGGTACTGAA
Found at i:32378578 original size:37 final size:37
Alignment explanation
Indices: 32378537--32378658 Score: 95
Period size: 37 Copynumber: 3.2 Consensus size: 37
32378527 TATGTATAAT
32378537 TAAGTAGCATAAATATCAAATTTCTTGTTCTTGGGCA
1 TAAGTAGCATAAATATCAAATTTCTTGTTCTTGGGCA
* * ** ***
32378574 TAAGTA-TACTAAAT-TCATAATTTTTTGAATGATATGTATAA
1 TAAGTAGCA-TAAATATCA-AATTTCTTG--TTCT-TG-GGCA
*
32378615 TTAAGTAGCATAAATATCAAATTACTTGTTCTTGGGCA
1 -TAAGTAGCATAAATATCAAATTTCTTGTTCTTGGGCA
32378653 TAAGTA
1 TAAGTA
32378659 TACTAAATTC
Statistics
Matches: 61, Mismatches: 15, Indels: 18
0.65 0.16 0.19
Matches are distributed among these distances:
36 4 0.07
37 25 0.41
38 1 0.02
39 4 0.07
40 4 0.07
41 1 0.02
42 18 0.30
43 4 0.07
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.39
Consensus pattern (37 bp):
TAAGTAGCATAAATATCAAATTTCTTGTTCTTGGGCA
Found at i:32378649 original size:79 final size:79
Alignment explanation
Indices: 32378518--32378676 Score: 309
Period size: 79 Copynumber: 2.0 Consensus size: 79
32378508 TTGAGATTAA
*
32378518 TTTGAATGATATGTATAATTAAGTAGCATAAATATCAAATTTCTTGTTCTTGGGCATAAGTATAC
1 TTTGAATGATATGTATAATTAAGTAGCATAAATATCAAATTACTTGTTCTTGGGCATAAGTATAC
32378583 TAAATTCATAATTT
66 TAAATTCATAATTT
32378597 TTTGAATGATATGTATAATTAAGTAGCATAAATATCAAATTACTTGTTCTTGGGCATAAGTATAC
1 TTTGAATGATATGTATAATTAAGTAGCATAAATATCAAATTACTTGTTCTTGGGCATAAGTATAC
32378662 TAAATTCATAATTT
66 TAAATTCATAATTT
32378676 T
1 T
32378677 GGGAAGAATT
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.42
Consensus pattern (79 bp):
TTTGAATGATATGTATAATTAAGTAGCATAAATATCAAATTACTTGTTCTTGGGCATAAGTATAC
TAAATTCATAATTT
Found at i:32378940 original size:10 final size:10
Alignment explanation
Indices: 32378899--32378937 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
32378889 ATTAACATGT
32378899 TTAATTTTAA
1 TTAATTTTAA
32378909 TTAATTTATAA
1 TTAATTT-TAA
* *
32378920 TAAATTTTGA
1 TTAATTTTAA
32378930 TTAATTTT
1 TTAATTTT
32378938 GATCATTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (10 bp):
TTAATTTTAA
Found at i:32393347 original size:29 final size:30
Alignment explanation
Indices: 32393288--32393345 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
32393278 TCCGAGACTT
*
32393288 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
32393318 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
32393346 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:32393575 original size:13 final size:13
Alignment explanation
Indices: 32393557--32393588 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
32393547 TTTCCAGCAA
32393557 TTATGAATTTATT
1 TTATGAATTTATT
32393570 TTATGAATTTATT
1 TTATGAATTTATT
*
32393583 TGATGA
1 TTATGA
32393589 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:32393796 original size:50 final size:50
Alignment explanation
Indices: 32393683--32393924 Score: 304
Period size: 50 Copynumber: 4.7 Consensus size: 50
32393673 ATTTGGGTAA
* * *
32393683 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
32393739 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
32393789 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
32393839 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
**
32393889 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
32393925 TTTGGCATGT
Statistics
Matches: 168, Mismatches: 17, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
50 94 0.56
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:32393872 original size:100 final size:103
Alignment explanation
Indices: 32393683--32393932 Score: 371
Period size: 100 Copynumber: 2.4 Consensus size: 103
32393673 ATTTGGGTAA
32393683 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
32393748 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACCGACACG
* * *
32393789 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
*
32393851 TAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCGACACG
* *
32393889 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
32393933 GTTATTATCA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
100 52 0.39
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCGACACG
Found at i:32401930 original size:15 final size:15
Alignment explanation
Indices: 32401882--32401924 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
32401872 TCTTGCAATT
32401882 TATTGTATAGA-TCAA
1 TATTGTATA-ATTCAA
32401897 -ATTAGTATAATTCAA
1 TATT-GTATAATTCAA
32401912 TATTGTATAATTC
1 TATTGTATAATTC
32401925 GTTATTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 4 0.16
15 18 0.72
16 3 0.12
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (15 bp):
TATTGTATAATTCAA
Found at i:32408363 original size:28 final size:28
Alignment explanation
Indices: 32408309--32408364 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
32408299 TTTTTTAACC
* * *
32408309 TATTTTTTCAGAACCATCTTCTCAAAAT
1 TATTTTTTCAGAAACAACTTATCAAAAT
*
32408337 TATTTTTTCAGAAACAACTGTATAAAAA
1 TATTTTTTCAGAAACAACT-TATCAAAA
32408365 GAGCGTCCTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 17 0.74
29 6 0.26
ACGTcount: A:0.39, C:0.16, G:0.05, T:0.39
Consensus pattern (28 bp):
TATTTTTTCAGAAACAACTTATCAAAAT
Found at i:32408569 original size:126 final size:126
Alignment explanation
Indices: 32408125--32408775 Score: 790
Period size: 125 Copynumber: 5.2 Consensus size: 126
32408115 AGCATCCAGT
*
32408125 TGGGAGCTTTTTTCAGTACTTCTGCTGACAGT-CAATCCTGCTTGAAGCGTTTTTCAACCTATTT
1 TGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGC-ATCCTGCTTGAAGCGTTTTTCAACCTATTT
* * *
32408189 TTTCAAAACCATCTTCTCGAAATTATTTTTTTAGAAACAACTGTACAAAAAGAGTGTCTAGT
65 TTTCAAAACCATCTTCTCAAAATTATTTTTTCAGAAACAACTGTACAAAAAGAGTGTCTAGC
* * * * *
32408251 TGGGAGATTTTTT-AGTACTTTTGCTGATAGTGCATCTTGTTTGAAGCGTTTTTTAACCTATTTT
1 TGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTTTCAACCTATTTT
* * *
32408315 TTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAACAACTGTATAAAAAGAGCGTCCT-GC
66 TTCAAAACCATCTTCTCAAAATTATTTTTTCAGAAACAACTGTACAAAAAGAGTGT-CTAGC
* * * * *
32408376 TAGGAGCTTTTTTTAGT-CTTTTGCTAACAGTGCATCCTACTTGAAGCATTTTTCAACCTATTTT
1 TGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTTTCAACCTATTTT
* * * *
32408440 TTCAGAACCATCTTCTTAAAATTATTTTTTCAGAAACAATTGTACAAAAAAAGTGTCTAGC
66 TTCAAAACCATCTTCTCAAAATTATTTTTTCAGAAACAACTGTACAAAAAGAGTGTCTAGC
* * ** * *
32408501 TGGGAACTTTTTTCAGTATTTTTTTTGATAGTGCATCCTGCTTGAAGCGTTTTTCAACCTACTTT
1 TGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTTTCAACCTATTTT
* ** * * *
32408566 TTCAAAACCATCTTCTCAAAATTATTTTTTTAGAAACAACCATACAAAAAGAGCGTCCAAC
66 TTCAAAACCATCTTCTCAAAATTATTTTTTCAGAAACAACTGTACAAAAAGAGTGTCTAGC
* * * * * * * * *
32408627 TGAGAGCTTCTTTCAGTAATTTTGCTGGCAATGCATCTTGCTTGAATCATTTTTCAACATATTTT
1 TGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTTTCAACCTATTTT
* * * ** * *
32408692 TTTATATCCATCTTCTCAAAATTA-TTTTTCAGAAACAACCATACAAAAAAAGTGTCCAGC
66 TTCAAAACCATCTTCTCAAAATTATTTTTTCAGAAACAACTGTACAAAAAGAGTGTCTAGC
* *
32408752 TGAGAGCTTTTTTCAGTGCTTTTG
1 TGGGAGCTTTTTTCAGTACTTTTG
32408776 TTAACTGTAC
Statistics
Matches: 449, Mismatches: 71, Indels: 11
0.85 0.13 0.02
Matches are distributed among these distances:
124 2 0.00
125 267 0.59
126 180 0.40
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (126 bp):
TGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTTTCAACCTATTTT
TTCAAAACCATCTTCTCAAAATTATTTTTTCAGAAACAACTGTACAAAAAGAGTGTCTAGC
Found at i:32408605 original size:251 final size:251
Alignment explanation
Indices: 32408127--32408775 Score: 849
Period size: 251 Copynumber: 2.6 Consensus size: 251
32408117 CATCCAGTTG
* *
32408127 GGAGCTTTTTTCAGTACTTCTGCTGACAGT-CAATCCTGCTTGAAGCGTTTTTCAACCTATTTTT
1 GGAGCTTTTTTCAGTACTTTTGCTGACAGTGC-ATCCTGCTTGAAGCATTTTTCAACCTATTTTT
* * * *
32408191 TCAAAACCATCTTCTCGAAATTATTTTTTTAGAAACAACTGTACAAAAAGAGTGTCTAGTTGGGA
65 TCAAAACCATCTTCTCAAAATTATTTTTTCAGAAACAACTGTACAAAAAAAGTGTCTAGCTGGGA
* * * *
32408256 GA-TTTTTT-AGTACTTTTGCTGATAGTGCATCTTGTTTGAAGCGTTTTTTAACCTATTTTTTCA
130 -ACTTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGAAGCGTTTTTCAACCTACTTTTTCA
* ** * **
32408319 GAACCATCTTCTCAAAATTATTTTTTCAGAAACAACTGTATAAAAAGAGCGTCCTGCT
194 AAACCATCTTCTCAAAATTATTTTTTCAGAAACAACCATACAAAAAGAGCGTCCAACT
* * *
32408377 AGGAGCTTTTTTTAGT-CTTTTGCTAACAGTGCATCCTACTTGAAGCATTTTTCAACCTATTTTT
1 -GGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGCTTGAAGCATTTTTCAACCTATTTTT
* * *
32408441 TCAGAACCATCTTCTTAAAATTATTTTTTCAGAAACAATTGTACAAAAAAAGTGTCTAGCTGGGA
65 TCAAAACCATCTTCTCAAAATTATTTTTTCAGAAACAACTGTACAAAAAAAGTGTCTAGCTGGGA
* **
32408506 ACTTTTTTCAGTATTTTTTTTGATAGTGCATCCTGCTTGAAGCGTTTTTCAACCTACTTTTTCAA
130 ACTTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGAAGCGTTTTTCAACCTACTTTTTCAA
*
32408571 AACCATCTTCTCAAAATTATTTTTTTAGAAACAACCATACAAAAAGAGCGTCCAACT
195 AACCATCTTCTCAAAATTATTTTTTCAGAAACAACCATACAAAAAGAGCGTCCAACT
* * * * * * *
32408628 GAGAGCTTCTTTCAGTAATTTTGCTGGCAATGCATCTTGCTTGAATCATTTTTCAACATATTTTT
1 G-GAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGCTTGAAGCATTTTTCAACCTATTTTT
* * * ** * *
32408693 TTATATCCATCTTCTCAAAATTA-TTTTTCAGAAACAACCATACAAAAAAAGTGTCCAGCTGAGA
65 TCAAAACCATCTTCTCAAAATTATTTTTTCAGAAACAACTGTACAAAAAAAGTGTCTAGCTGGGA
* *
32408757 GCTTTTTTCAGTGCTTTTG
130 ACTTTTTTCAGTACTTTTG
32408776 TTAACTGTAC
Statistics
Matches: 344, Mismatches: 49, Indels: 10
0.85 0.12 0.02
Matches are distributed among these distances:
249 1 0.00
250 107 0.31
251 177 0.51
252 59 0.17
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (251 bp):
GGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGCTTGAAGCATTTTTCAACCTATTTTTT
CAAAACCATCTTCTCAAAATTATTTTTTCAGAAACAACTGTACAAAAAAAGTGTCTAGCTGGGAA
CTTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGAAGCGTTTTTCAACCTACTTTTTCAAA
ACCATCTTCTCAAAATTATTTTTTCAGAAACAACCATACAAAAAGAGCGTCCAACT
Found at i:32408949 original size:49 final size:50
Alignment explanation
Indices: 32408877--32408981 Score: 133
Period size: 50 Copynumber: 2.1 Consensus size: 50
32408867 TTTATTTTTT
* ** *
32408877 TAAAACCTTAAACCCTAATTTA-TTTTTCAAAAACCCTAATGCTAAACCC
1 TAAAACCTTAAACCCAAATTTATTTTTTCAAAAACCCTAACCCTAAACAC
* *
32408926 TAAAA-CTCTAAACCCAAATTTATTTTTTCAAACATCCTAACCCTAAACAC
1 TAAAACCT-TAAACCCAAATTTATTTTTTCAAAAACCCTAACCCTAAACAC
32408976 TAAAAC
1 TAAAAC
32408982 ACTACCCATA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
48 2 0.04
49 18 0.38
50 27 0.57
ACGTcount: A:0.43, C:0.27, G:0.01, T:0.30
Consensus pattern (50 bp):
TAAAACCTTAAACCCAAATTTATTTTTTCAAAAACCCTAACCCTAAACAC
Found at i:32409794 original size:56 final size:56
Alignment explanation
Indices: 32409729--32409911 Score: 167
Period size: 56 Copynumber: 3.2 Consensus size: 56
32409719 TTTAAAGATG
32409729 AAAACTTTAGATTATTCTAATTTTACAACTATATTTTCTAAAAAAATTAATAATAA
1 AAAACTTTAGATTATTCTAATTTTACAACTATATTTTCTAAAAAAATTAATAATAA
* * ***** * * ** *
32409785 AAAATTTTAGATT-TTATAAAATTATTTTTTTTTTAGATTT-TAAAACTATTCAA-AGAT-G
1 AAAACTTTAGATTATTCT--AATT-TTACAACTATA-TTTTCTAAAAAAATT-AATA-ATAA
32409843 AAAACTTTAGATTATTCTAATTTTACAACTATATTTTCTAAAAAAATTAATAATAA
1 AAAACTTTAGATTATTCTAATTTTACAACTATATTTTCTAAAAAAATTAATAATAA
*
32409899 AAAATTTTAGATT
1 AAAACTTTAGATT
32409912 TTATAAAATT
Statistics
Matches: 92, Mismatches: 25, Indels: 20
0.67 0.18 0.15
Matches are distributed among these distances:
55 10 0.11
56 38 0.41
57 8 0.09
58 26 0.28
59 10 0.11
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.44
Consensus pattern (56 bp):
AAAACTTTAGATTATTCTAATTTTACAACTATATTTTCTAAAAAAATTAATAATAA
Found at i:32409848 original size:114 final size:114
Alignment explanation
Indices: 32409641--32409981 Score: 547
Period size: 114 Copynumber: 2.9 Consensus size: 114
32409631 AGAATTCCAT
* * * * * *
32409641 TTTTCTAAAAAATAATAATAATAACAACTTTTAGATATTATAAAATTCTTATTAAAAGTTGTTTA
1 TTTTCTAAAAAA-ATTAATAATAAAAAATTTTAGATTTTATAAAATTATT-TT-----TTTTTTA
*
32409706 GATTTTAAAACTATTTAAAGATGAAAACTTTAGATTATTCTAATTTTACAACTATA
59 GATTTTAAAACTATTCAAAGATGAAAACTTTAGATTATTCTAATTTTACAACTATA
32409762 TTTTCTAAAAAAATTAATAATAAAAAATTTTAGATTTTATAAAATTATTTTTTTTTTAGATTTTA
1 TTTTCTAAAAAAATTAATAATAAAAAATTTTAGATTTTATAAAATTATTTTTTTTTTAGATTTTA
32409827 AAACTATTCAAAGATGAAAACTTTAGATTATTCTAATTTTACAACTATA
66 AAACTATTCAAAGATGAAAACTTTAGATTATTCTAATTTTACAACTATA
32409876 TTTTCTAAAAAAATTAATAATAAAAAATTTTAGATTTTATAAAATTATTTTTTTTTTAGATTTTA
1 TTTTCTAAAAAAATTAATAATAAAAAATTTTAGATTTTATAAAATTATTTTTTTTTTAGATTTTA
*
32409941 AAACTATTCAAAGATGAAAACTCTAGATTATTCTAATTTTA
66 AAACTATTCAAAGATGAAAACTTTAGATTATTCTAATTTTA
32409982 ACTTAGTAAA
Statistics
Matches: 212, Mismatches: 8, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
114 166 0.78
119 2 0.01
120 32 0.15
121 12 0.06
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (114 bp):
TTTTCTAAAAAAATTAATAATAAAAAATTTTAGATTTTATAAAATTATTTTTTTTTTAGATTTTA
AAACTATTCAAAGATGAAAACTTTAGATTATTCTAATTTTACAACTATA
Found at i:32409852 original size:58 final size:58
Alignment explanation
Indices: 32409785--32409969 Score: 166
Period size: 58 Copynumber: 3.2 Consensus size: 58
32409775 TTAATAATAA
*
32409785 AAAATTTTAGATTTTATAAAATTATTTTTTTTTTAGATTTTAAAACTATTCAAAGATG
1 AAAACTTTAGATTTTATAAAATTATTTTTTTTTTAGATTTTAAAACTATTCAAAGATG
* ***** * * ** *
32409843 AAAACTTTAGATTATTCT--AATT-TTACAACTATA-TTTTCTAAAAAAATT-AATA-ATAA
1 AAAACTTTAGATT-TTATAAAATTATTTTTTTTTTAGATTT-TAAAACTATTCAA-AGAT-G
*
32409899 AAAATTTTAGATTTTATAAAATTATTTTTTTTTTAGATTTTAAAACTATTCAAAGATG
1 AAAACTTTAGATTTTATAAAATTATTTTTTTTTTAGATTTTAAAACTATTCAAAGATG
*
32409957 AAAACTCTAGATT
1 AAAACTTTAGATT
32409970 ATTCTAATTT
Statistics
Matches: 91, Mismatches: 26, Indels: 20
0.66 0.19 0.15
Matches are distributed among these distances:
55 10 0.11
56 26 0.29
57 8 0.09
58 37 0.41
59 10 0.11
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (58 bp):
AAAACTTTAGATTTTATAAAATTATTTTTTTTTTAGATTTTAAAACTATTCAAAGATG
Found at i:32411674 original size:31 final size:31
Alignment explanation
Indices: 32411636--32411695 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
32411626 GGATGAAAGT
32411636 CACTCTAAAATAAATATCAAATGGAGTGAGA
1 CACTCTAAAATAAATATCAAATGGAGTGAGA
32411667 CACTCTAAAATAAATATCAAATGGAGTGA
1 CACTCTAAAATAAATATCAAATGGAGTGA
32411696 AAACTTACCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.48, C:0.13, G:0.15, T:0.23
Consensus pattern (31 bp):
CACTCTAAAATAAATATCAAATGGAGTGAGA
Found at i:32415146 original size:53 final size:53
Alignment explanation
Indices: 32415067--32415220 Score: 159
Period size: 53 Copynumber: 2.9 Consensus size: 53
32415057 ACTTCATTAA
* * * * **
32415067 ATTC-TTCCATATAATGCCATAACCCACCAGCTATGATCTTATACAATATGGT
1 ATTCTTTCCATATGATGTCATAACCCACCAGCTACGATCTTACACAATATCAT
* * * *
32415119 ATTCTTTCCATACGATGTCATAACCCACCAGTTACGGTCTTACACGATATCAT
1 ATTCTTTCCATATGATGTCATAACCCACCAGCTACGATCTTACACAATATCAT
* * * * *
32415172 TTTCTTTCTATATGATGTCATAACTCACCAGTTAC-ATCTTACACGATAT
1 ATTCTTTCCATATGATGTCATAACCCACCAGCTACGATCTTACACAATAT
32415221 GGTCTTTAGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
52 17 0.20
53 69 0.80
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (53 bp):
ATTCTTTCCATATGATGTCATAACCCACCAGCTACGATCTTACACAATATCAT
Found at i:32420828 original size:20 final size:20
Alignment explanation
Indices: 32420803--32420845 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
32420793 CATTTGAAGT
32420803 AGCATTCAAGTGTTCATGGA
1 AGCATTCAAGTGTTCATGGA
32420823 AGCATTCAAGTGTTCATGGA
1 AGCATTCAAGTGTTCATGGA
32420843 AGC
1 AGC
32420846 CTCAGTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (20 bp):
AGCATTCAAGTGTTCATGGA
Found at i:32421277 original size:34 final size:34
Alignment explanation
Indices: 32421230--32421307 Score: 120
Period size: 34 Copynumber: 2.3 Consensus size: 34
32421220 ATGTTTAATC
* * *
32421230 ATCTAAGGTAGCTGAGGGTTAAATTAGCAACGGT
1 ATCTAACGAAGCTGAGGGTTAAATTAGCAACAGT
*
32421264 ATCTAACGAAGCTGAGGGTTAAATTAGCAATAGT
1 ATCTAACGAAGCTGAGGGTTAAATTAGCAACAGT
32421298 ATCTAACGAA
1 ATCTAACGAA
32421308 ACATTAGCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (34 bp):
ATCTAACGAAGCTGAGGGTTAAATTAGCAACAGT
Found at i:32422547 original size:23 final size:23
Alignment explanation
Indices: 32422521--32422751 Score: 168
Period size: 23 Copynumber: 10.0 Consensus size: 23
32422511 GGACAACACT
* *
32422521 TATACACAAAATATAACAGCATG
1 TATACACAAAATTTGACAGCATG
*
32422544 TATATACAAAATTTGACAGCAT-
1 TATACACAAAATTTGACAGCATG
* * * *
32422566 TGATTCACCAAAATTGGGCAGCATA
1 T-ATACA-CAAAATTTGACAGCATG
* *
32422591 CATATAC-AAATTTGGACAGCACT-
1 TATACACAAAATTT-GACAGCA-TG
* *
32422614 TATACACAAAATATAACAGCATG
1 TATACACAAAATTTGACAGCATG
**
32422637 TATGTACAAAATTTGACAGCATTG
1 TATACACAAAATTTGACAGCA-TG
* * *
32422661 CT-T-CACCAAAATTGGGCAGCATA
1 -TATACA-CAAAATTTGACAGCATG
* *
32422684 CATACAC-AAATTTGGACAGCATT
1 TATACACAAAATTT-GACAGCATG
*
32422707 TATACACAAAATTTAACAGCATG
1 TATACACAAAATTTGACAGCATG
*
32422730 TATATACAAAATTTGACAGCAT
1 TATACACAAAATTTGACAGCAT
32422752 TGATTTATCA
Statistics
Matches: 161, Mismatches: 33, Indels: 28
0.73 0.15 0.13
Matches are distributed among these distances:
22 12 0.07
23 101 0.63
24 47 0.29
25 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (23 bp):
TATACACAAAATTTGACAGCATG
Found at i:32422606 original size:93 final size:93
Alignment explanation
Indices: 32422495--32422782 Score: 495
Period size: 93 Copynumber: 3.1 Consensus size: 93
32422485 CTAACTATAC
*
32422495 TACATATTACAAATTTGGACAACACTTATACACAAAATATAACAGCATGTATATACAAAATTTGA
1 TACATA-TACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTTGA
32422560 CAGCATTGATTCACCAAAATTGGGCAGCA
65 CAGCATTGATTCACCAAAATTGGGCAGCA
*
32422589 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATGTACAAAATTTGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTTGAC
*
32422654 AGCATTGCTTCACCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
* * *
32422682 TACATACACAAATTTGGACAGCATTTATACACAAAATTTAACAGCATGTATATACAAAATTTGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTTGAC
* *
32422747 AGCATTGATTTATCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
32422775 TACATATA
1 TACATATA
32422783 ACAATTGGGC
Statistics
Matches: 183, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
93 177 0.97
94 6 0.03
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.27
Consensus pattern (93 bp):
TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTTGAC
AGCATTGATTCACCAAAATTGGGCAGCA
Found at i:32422796 original size:46 final size:45
Alignment explanation
Indices: 32422553--32422798 Score: 167
Period size: 46 Copynumber: 5.3 Consensus size: 45
32422543 GTATATACAA
*
32422553 AATTTGACAGCATTGATTCACCAAAATTGGGCAGCATACATAT-AC
1 AATTGGACAGCATTGATTCA-CAAAATTGGGCAGCATACATATAAC
* ** ** * *
32422598 AAATTTGGACAGCACTT-ATACACAAAATAT-AACAGCATGTATGTACAA
1 -AA-TTGGACAGCA-TTGATTCACAAAAT-TGGGCAGCATACATATA-AC
* * *
32422646 AATTTGACAGCATTGCTTCACCAAAATTGGGCAGCATACATA-CAC
1 AATTGGACAGCATTGATTCA-CAAAATTGGGCAGCATACATATAAC
* * *** ** *
32422691 AAATTTGGACAGCATTTATACACAAAATTTAACAGCATGTATATACAA
1 -AA-TTGGACAGCATTGATTCACAAAATTGGGCAGCATACATATA-AC
* *
32422739 AATTTGACAGCATTGATTTATCAAAATTGGGCAGCATACATATAAC
1 AATTGGACAGCATTGATTCA-CAAAATTGGGCAGCATACATATAAC
*
32422785 AATTGGGCAGCATT
1 AATTGGACAGCATT
32422799 TAAGCATAAC
Statistics
Matches: 146, Mismatches: 41, Indels: 26
0.69 0.19 0.12
Matches are distributed among these distances:
45 3 0.02
46 75 0.51
47 64 0.44
48 4 0.03
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (45 bp):
AATTGGACAGCATTGATTCACAAAATTGGGCAGCATACATATAAC
Found at i:32423553 original size:28 final size:28
Alignment explanation
Indices: 32423521--32423647 Score: 182
Period size: 28 Copynumber: 4.5 Consensus size: 28
32423511 ATTTAATAAG
* * *
32423521 CTCGCACACTTAGTGCTCAATAATCAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
* *
32423549 CTCGCACACTTAGTGCTTTACCATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
32423577 CTCGCACACTTAGTGCTCTACAATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
* *
32423605 CTCGCACACTTAGTGCTTTATAATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
*
32423633 TTCGCACACTTAGTG
1 CTCGCACACTTAGTG
32423648 TCGAAAATCA
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 89 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.31
Consensus pattern (28 bp):
CTCGCACACTTAGTGCTCTACAATTAAA
Found at i:32429591 original size:31 final size:31
Alignment explanation
Indices: 32429534--32429592 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
32429524 ACAATTCCAC
* * *
32429534 ATTTTTTTAGAAGTTGATGGTCAAATTTTGA
1 ATTTTTTAAAAAGTTGAAGGTCAAATTTTGA
32429565 ATTTTTTAAAAAGTTGAAGG-CTAAATTT
1 ATTTTTTAAAAAGTTGAAGGTC-AAATTT
32429593 GGCTAAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 23 0.96
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.46
Consensus pattern (31 bp):
ATTTTTTAAAAAGTTGAAGGTCAAATTTTGA
Found at i:32434431 original size:23 final size:23
Alignment explanation
Indices: 32434383--32434428 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
32434373 TTTTTGGATG
32434383 ATATTATAATTTTTAGATTTTTA
1 ATATTATAATTTTTAGATTTTTA
* *
32434406 ATATTTTAA-TTTTATATTTTTA
1 ATATTATAATTTTTAGATTTTTA
32434428 A
1 A
32434429 ATAGTATCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (23 bp):
ATATTATAATTTTTAGATTTTTA
Found at i:32446881 original size:42 final size:42
Alignment explanation
Indices: 32446794--32446910 Score: 123
Period size: 42 Copynumber: 2.8 Consensus size: 42
32446784 AGCTCGTACA
* * *
32446794 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAACAAATAATG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGTAACAAATAACG
* *
32446836 ATGCCACA-GTCCCGGACAGGGTCTTACACGTAATCATAT-ACG
1 ATGCCA-ATGTCCCAGACAGGGTCTTACACGTAA-CAAATAACG
* *
32446878 ATGCCAATGTCCCAGATATGGTCTTACACGTAA
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAA
32446911 ATCTCAAATC
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
41 1 0.02
42 57 0.89
43 6 0.09
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGTAACAAATAACG
Found at i:32451176 original size:10 final size:11
Alignment explanation
Indices: 32451159--32451191 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
32451149 TCTAGCTCAA
32451159 TCAATTTTTTT
1 TCAATTTTTTT
32451170 T-AATTTTTTT
1 TCAATTTTTTT
*
32451180 TCACTTTTTTT
1 TCAATTTTTTT
32451191 T
1 T
32451192 TCATTTCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (11 bp):
TCAATTTTTTT
Found at i:32452176 original size:15 final size:15
Alignment explanation
Indices: 32452156--32452213 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 15
32452146 TAAATATGAA
32452156 AAATAAAATAAAAAC
1 AAATAAAATAAAAAC
32452171 AAATAAAAATAAAAGTACC
1 AAAT-AAAATAAAA--A-C
*
32452190 AAA-AAAACAAAAAC
1 AAATAAAATAAAAAC
32452204 TAAATAAAAT
1 -AAATAAAAT
32452214 CACTTTGATT
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
14 1 0.03
15 8 0.23
16 13 0.37
17 8 0.23
18 1 0.03
19 4 0.11
ACGTcount: A:0.76, C:0.09, G:0.02, T:0.14
Consensus pattern (15 bp):
AAATAAAATAAAAAC
Found at i:32459803 original size:29 final size:31
Alignment explanation
Indices: 32459716--32459805 Score: 89
Period size: 31 Copynumber: 3.0 Consensus size: 31
32459706 TAATTGAATC
* *
32459716 AAAAT-AAAATTTTCATGTATTCATTTGAACT
1 AAAATCAAAA-TTTCATGTATTCAATTGCACT
* * *
32459747 AAAATCAAAATTTTATGTGTAT-GATTGCACT
1 AAAATCAAAATTTCATGTAT-TCAATTGCACT
32459778 -AAATCAAAA-TTCATGTATTCAATTGCAC
1 AAAATCAAAATTTCATGTATTCAATTGCAC
32459806 ATTGAATCTA
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
28 1 0.02
29 14 0.29
30 9 0.19
31 19 0.40
32 5 0.10
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (31 bp):
AAAATCAAAATTTCATGTATTCAATTGCACT
Found at i:32461084 original size:19 final size:20
Alignment explanation
Indices: 32461046--32461084 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
32461036 ACCCAAAAAC
* *
32461046 CATTGTAAAAATAAATTAGT
1 CATTGTAAAAAGAAAGTAGT
32461066 CATTG-AAAAAGAAAGTAGT
1 CATTGTAAAAAGAAAGTAGT
32461085 TAATTTCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.51, C:0.05, G:0.15, T:0.28
Consensus pattern (20 bp):
CATTGTAAAAAGAAAGTAGT
Found at i:32465303 original size:23 final size:23
Alignment explanation
Indices: 32465277--32465331 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
32465267 TTAGGACTAG
32465277 TGGCA-AAATAAGATTATGACACA
1 TGGCATAAA-AAGATTATGACACA
*
32465300 TGGCATAAAAAGATTATGACACG
1 TGGCATAAAAAGATTATGACACA
*
32465323 TGACATAAA
1 TGGCATAAA
32465332 TGATGTCATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 26 0.90
24 3 0.10
ACGTcount: A:0.47, C:0.13, G:0.18, T:0.22
Consensus pattern (23 bp):
TGGCATAAAAAGATTATGACACA
Found at i:32469371 original size:27 final size:27
Alignment explanation
Indices: 32469332--32469391 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
32469322 TAGAAACGGG
*
32469332 AATGATCCCGGTCTCAATGA-TAATCCA
1 AATGGTCCCGGTCTCAAT-ATTAATCCA
* *
32469359 AATGGTCCTGGTCTTAATATTAATCCA
1 AATGGTCCCGGTCTCAATATTAATCCA
32469386 AATGGT
1 AATGGT
32469392 TAGTATGTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (27 bp):
AATGGTCCCGGTCTCAATATTAATCCA
Found at i:32474236 original size:27 final size:26
Alignment explanation
Indices: 32474189--32474243 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
32474179 TAGGTTAATT
* *
32474189 TTAAAATAAATAATATGTAAAATAAC
1 TTAAAATAAATAACATATAAAATAAC
*
32474215 TTAAAATAAAATGACATATAAAATAAC
1 TTAAAAT-AAATAACATATAAAATAAC
32474242 TT
1 TT
32474244 GAAACAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (26 bp):
TTAAAATAAATAACATATAAAATAAC
Found at i:32476510 original size:87 final size:87
Alignment explanation
Indices: 32476364--32476696 Score: 490
Period size: 87 Copynumber: 3.8 Consensus size: 87
32476354 CGCTAGTGCT
* * *
32476364 TAGGAAGGCAGAATCTTCTATCTTTAACCAGCTCCGCTACAACCGATAGAGGCAAGGCTTCGTTT
1 TAGGAAGGCAAAATCTGCTATCTTTAACCAGCTCCACTACAACCGATAGAGGCAAGGCTTCGTTT
32476429 TCGATCTGCTTCGCTGTTAATG
66 TCGATCTGCTTCGCTGTTAATG
** *
32476451 TAGGAAGGCAAAATCTGCTATCTTTAACCTA-CTCCACTGTAACCGATGGAGGCAAGGCTTCGTT
1 TAGGAAGGCAAAATCTGCTATCTTTAACC-AGCTCCACTACAACCGATAGAGGCAAGGCTTCGTT
32476515 TTCGATCTGCTTCGCTGTTAATG
65 TTCGATCTGCTTCGCTGTTAATG
* * ** *
32476538 GAGGAAGGCAAAATCTGCTATCTTTCACCTA-CTCCACTGTAACCGATGGAGGCAAGGCTTCGTT
1 TAGGAAGGCAAAATCTGCTATCTTTAACC-AGCTCCACTACAACCGATAGAGGCAAGGCTTCGTT
32476602 TTCGATCTGCTTCGCTGTTAATG
65 TTCGATCTGCTTCGCTGTTAATG
* ** *
32476625 CAGGAAGGCAAGGTCTGCTATCTTTAACCAGCTCCACTACAACCGATAGAGGCAAGGCTTTGTTT
1 TAGGAAGGCAAAATCTGCTATCTTTAACCAGCTCCACTACAACCGATAGAGGCAAGGCTTCGTTT
*
32476690 TCAATCT
66 TCGATCT
32476697 TCACCGATCT
Statistics
Matches: 227, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
86 1 0.00
87 225 0.99
88 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (87 bp):
TAGGAAGGCAAAATCTGCTATCTTTAACCAGCTCCACTACAACCGATAGAGGCAAGGCTTCGTTT
TCGATCTGCTTCGCTGTTAATG
Found at i:32476635 original size:43 final size:43
Alignment explanation
Indices: 32476413--32476637 Score: 115
Period size: 43 Copynumber: 5.2 Consensus size: 43
32476403 CAACCGATAG
*
32476413 AGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGTAGGA
1 AGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
** * ** * * * * *
32476456 AGGCAAAATCTGC-TATCTTTAACCTACTCCACTG-TAA-CCGATGG-
1 AGGC-AAGGCTTCGT-T-TTCGATCTGCTTCGCTGTTAATGC-A-GGA
*
32476500 AGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGGAGGA
1 AGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
** * * * * * * *
32476543 AGGCAAAATCTGCTATCTTTC-ACCTACTCCACTG-TAA-CCGATGG-
1 AGGC-AAGGCTTC-GT-TTTCGATCTGCTTCGCTGTTAATGC-A-GGA
32476587 AGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
1 AGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
32476630 AGGCAAGG
1 AGGCAAGG
32476638 TCTGCTATCT
Statistics
Matches: 123, Mismatches: 41, Indels: 36
0.62 0.20 0.18
Matches are distributed among these distances:
41 4 0.03
42 25 0.20
43 36 0.29
44 29 0.24
45 25 0.20
46 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.30
Consensus pattern (43 bp):
AGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
Found at i:32478355 original size:7 final size:7
Alignment explanation
Indices: 32478313--32478349 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
32478303 TGGCCTCTCC
32478313 TTTTC-T
1 TTTTCTT
32478319 TTTTCTT
1 TTTTCTT
32478326 TTTTCTT
1 TTTTCTT
32478333 TTTTCTT
1 TTTTCTT
32478340 TTTTCTT
1 TTTTCTT
32478347 TTT
1 TTT
32478350 CATTTTCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 5 0.17
7 25 0.83
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTCTT
Found at i:32478355 original size:14 final size:13
Alignment explanation
Indices: 32478313--32478355 Score: 68
Period size: 13 Copynumber: 3.2 Consensus size: 13
32478303 TGGCCTCTCC
32478313 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
32478326 TTTTCTTTTTTCTT
1 TTTTC-TTTTTCTT
*
32478340 TTTTCTTTTTCAT
1 TTTTCTTTTTCTT
32478353 TTT
1 TTT
32478356 CATTTTGACT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
13 15 0.54
14 13 0.46
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTCTTTTTCTT
Found at i:32478401 original size:34 final size:34
Alignment explanation
Indices: 32478339--32478435 Score: 149
Period size: 34 Copynumber: 2.8 Consensus size: 34
32478329 TCTTTTTTCT
*
32478339 TTTTTCTTTTTCATTTTCATTTTGACTTTGACTTTGA
1 TTTTTCTTTTTC---TTCTTTTTGACTTTGACTTTGA
*
32478376 TTTTTCTTTTTCTTCTTTTTGACTTTGATTTTGA
1 TTTTTCTTTTTCTTCTTTTTGACTTTGACTTTGA
32478410 TTTTTCTTTTTCTTCTTTTTGACTTT
1 TTTTTCTTTTTCTTCTTTTTGACTTT
32478436 TATTTTGGTT
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
34 46 0.79
37 12 0.21
ACGTcount: A:0.09, C:0.13, G:0.07, T:0.70
Consensus pattern (34 bp):
TTTTTCTTTTTCTTCTTTTTGACTTTGACTTTGA
Found at i:32478453 original size:12 final size:12
Alignment explanation
Indices: 32478433--32478465 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
32478423 TCTTTTTGAC
32478433 TTTT-ATTTTGG
1 TTTTGATTTTGG
*
32478444 TTTTGGTTTTGG
1 TTTTGATTTTGG
32478456 TTTTGATTTT
1 TTTTGATTTT
32478466 TCTTTTTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.06, C:0.00, G:0.21, T:0.73
Consensus pattern (12 bp):
TTTTGATTTTGG
Found at i:32483008 original size:27 final size:26
Alignment explanation
Indices: 32482961--32483015 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
32482951 TAGGTTAATT
* *
32482961 TTAAAATAAATAATATGTAAAATAAC
1 TTAAAATAAATAACATATAAAATAAC
*
32482987 TTAAAATAAAATGACATATAAAATAAC
1 TTAAAAT-AAATAACATATAAAATAAC
32483014 TT
1 TT
32483016 GAAACAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (26 bp):
TTAAAATAAATAACATATAAAATAAC
Found at i:32491002 original size:15 final size:14
Alignment explanation
Indices: 32490981--32491016 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
32490971 ATAATCCTTA
*
32490981 ATAATTATCTTAAT
1 ATAATTATCCTAAT
32490995 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
32491010 ATAATTA
1 ATAATTA
32491017 AAATAGAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:32491503 original size:13 final size:13
Alignment explanation
Indices: 32491485--32491513 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
32491475 TTCAACTTAC
32491485 TGTATTTTCATTT
1 TGTATTTTCATTT
32491498 TGTATTTTCATTT
1 TGTATTTTCATTT
32491511 TGT
1 TGT
32491514 CTAGGGTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.07, G:0.10, T:0.69
Consensus pattern (13 bp):
TGTATTTTCATTT
Found at i:32498243 original size:9 final size:9
Alignment explanation
Indices: 32498226--32498273 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
32498216 AGCTTGTGAA
32498226 AATTGAGAG
1 AATTGAGAG
*
32498235 AATTTAGAG
1 AATTGAGAG
*
32498244 AGTTGAGAG
1 AATTGAGAG
* *
32498253 AATAGAAAG
1 AATTGAGAG
*
32498262 ATTTGAGAG
1 AATTGAGAG
32498271 AAT
1 AAT
32498274 AGGATGTGAG
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.29, T:0.25
Consensus pattern (9 bp):
AATTGAGAG
Found at i:32508364 original size:184 final size:186
Alignment explanation
Indices: 32508055--32508429 Score: 612
Period size: 184 Copynumber: 2.0 Consensus size: 186
32508045 CAATACCCAT
* * *
32508055 ACAATTTTTATTGATACCTATTTCAAGATTGATACCAAACTTGCTTACTGACTTGAAATAAAAAT
1 ACAATTTTTATTGATACCTATTTAAAGATCGATACCAAACTTGCTTACTGACTTGAAACAAAAAT
** * *
32508120 TGAACAAAAGTAAAAAGTATCGATACCTTTCAAAAAATATCTATACCTATTGTATTTTTATCGAT
66 TGAACAAAAACAAAAAGTATCGATACCTTTCAAAAAATATCGATACCTATTGTATTTTTATCAAT
32508185 ACCATCTTTGATATCGATACCGTTTTTGCATTAT-AACT-TGATTTTTAAACAATC
131 ACCATCTTTGATATCGATACCGTTTTTGCATTATGAACTATGATTTTTAAACAATC
32508239 ACAATTTTTATTGATACCTATTTAAAGATCGATACCAAACTTGCTTACTGACTTGAAACAAAAAT
1 ACAATTTTTATTGATACCTATTTAAAGATCGATACCAAACTTGCTTACTGACTTGAAACAAAAAT
*
32508304 TGAACAAAAACAAAAAGTAT-GAATACTTTTCAAAAAATATCGATACCTATTGTATTTTTATCAA
66 TGAACAAAAACAAAAAGTATCG-ATACCTTTCAAAAAATATCGATACCTATTGTATTTTTATCAA
* **
32508368 TACCATCTTTGATATCGATACCGTTTTTGCATTCTGATTTAATGATTTTTAAACAATC
130 TACCATCTTTGATATCGATACCGTTTTTGCATTATGAACT-ATGATTTTTAAACAATC
32508426 ACAA
1 ACAA
32508430 AAAGTATCGA
Statistics
Matches: 176, Mismatches: 11, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
183 1 0.01
184 153 0.87
185 2 0.01
187 20 0.11
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (186 bp):
ACAATTTTTATTGATACCTATTTAAAGATCGATACCAAACTTGCTTACTGACTTGAAACAAAAAT
TGAACAAAAACAAAAAGTATCGATACCTTTCAAAAAATATCGATACCTATTGTATTTTTATCAAT
ACCATCTTTGATATCGATACCGTTTTTGCATTATGAACTATGATTTTTAAACAATC
Found at i:32508872 original size:18 final size:18
Alignment explanation
Indices: 32508849--32508885 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
32508839 AACATCCTAA
32508849 TCTTGTGATGATTATTTT
1 TCTTGTGATGATTATTTT
32508867 TCTTGTGATGATTATTTT
1 TCTTGTGATGATTATTTT
32508885 T
1 T
32508886 TGTTTGCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.05, G:0.16, T:0.62
Consensus pattern (18 bp):
TCTTGTGATGATTATTTT
Found at i:32510943 original size:13 final size:13
Alignment explanation
Indices: 32510925--32510952 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32510915 TTATATCAAT
32510925 TGAATGTTAAAAA
1 TGAATGTTAAAAA
32510938 TGAATGTTAAAAA
1 TGAATGTTAAAAA
32510951 TG
1 TG
32510953 TTTTTCTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (13 bp):
TGAATGTTAAAAA
Found at i:32512440 original size:27 final size:27
Alignment explanation
Indices: 32512375--32512442 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
32512365 TCACACTCAT
32512375 GTCTTTATTTCAAAATTATAAAATCAA
1 GTCTTTATTTCAAAATTATAAAATCAA
* * *
32512402 ATATTTGTTTCAAAATTATAAAATCAA
1 GTCTTTATTTCAAAATTATAAAATCAA
*
32512429 GTCTTTAATTCAAA
1 GTCTTTATTTCAAA
32512443 TTGAACTTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.41
Consensus pattern (27 bp):
GTCTTTATTTCAAAATTATAAAATCAA
Found at i:32517618 original size:20 final size:20
Alignment explanation
Indices: 32517593--32517632 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
32517583 ACAGTACCAA
*
32517593 ATAGCTAATCTTTAGGGATT
1 ATAGCTAATCTTTAGAGATT
* *
32517613 ATAGCTGATTTTTAGAGATT
1 ATAGCTAATCTTTAGAGATT
32517633 CTGGTTAGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.42
Consensus pattern (20 bp):
ATAGCTAATCTTTAGAGATT
Found at i:32529232 original size:2 final size:2
Alignment explanation
Indices: 32529227--32529253 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32529217 CTCCTTCGCT
32529227 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
32529254 ATATATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:32529258 original size:2 final size:2
Alignment explanation
Indices: 32529253--32529282 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
32529243 TCTCTCTCTC
*
32529253 TA TA TA TA TA TA TA TA TA TA AA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32529283 AGACTAAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:32529847 original size:16 final size:15
Alignment explanation
Indices: 32529821--32529850 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
32529811 AAAAGATTTG
32529821 TAAAGAAACTGAAAA
1 TAAAGAAACTGAAAA
32529836 TAAAGCAAACTGAAA
1 TAAAG-AAACTGAAA
32529851 CATACTTCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.63, C:0.10, G:0.13, T:0.13
Consensus pattern (15 bp):
TAAAGAAACTGAAAA
Found at i:32544486 original size:59 final size:60
Alignment explanation
Indices: 32544385--32544511 Score: 204
Period size: 59 Copynumber: 2.1 Consensus size: 60
32544375 ATTTCTCCAA
*
32544385 TGCTT-AATTGTCATATCTCTTGTTGCAATTCAATACGCTTATGTCTTGTTTAAGTATTTG
1 TGCTTGAATTGTCA-ATCTCTTGTTGAAATTCAATACGCTTATGTCTTGTTTAAGTATTTG
* *
32544445 TGCTTGAATTGTC-ATCTCTTGTTGAAATTCAATATGTTTATGTCTTGTTTAAGTATTTG
1 TGCTTGAATTGTCAATCTCTTGTTGAAATTCAATACGCTTATGTCTTGTTTAAGTATTTG
32544504 TGCTTGAA
1 TGCTTGAA
32544512 AATTTTTATT
Statistics
Matches: 63, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
59 51 0.81
60 5 0.08
61 7 0.11
ACGTcount: A:0.22, C:0.13, G:0.17, T:0.49
Consensus pattern (60 bp):
TGCTTGAATTGTCAATCTCTTGTTGAAATTCAATACGCTTATGTCTTGTTTAAGTATTTG
Found at i:32546081 original size:46 final size:46
Alignment explanation
Indices: 32546014--32546106 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
32546004 TAAAGGTAAG
32546014 TAAAGAGTGCAATGACTACAAGCTAAATTGATATAAGATCCATAGT
1 TAAAGAGTGCAATGACTACAAGCTAAATTGATATAAGATCCATAGT
32546060 TAAAGAGTGCAATGACTACAAGCTAAATTGATATAAGATCCATAGT
1 TAAAGAGTGCAATGACTACAAGCTAAATTGATATAAGATCCATAGT
32546106 T
1 T
32546107 GCCTGGTCAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (46 bp):
TAAAGAGTGCAATGACTACAAGCTAAATTGATATAAGATCCATAGT
Found at i:32547757 original size:31 final size:31
Alignment explanation
Indices: 32547722--32547781 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
32547712 TCCACCTGTA
32547722 ATTGATATTAAAATCTCAAAAACAAAATTCC
1 ATTGATATTAAAATCTCAAAAACAAAATTCC
*
32547753 ATTGATATTGAAATCTCAAAAACAAAATT
1 ATTGATATTAAAATCTCAAAAACAAAATT
32547782 GACCATGCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.52, C:0.13, G:0.05, T:0.30
Consensus pattern (31 bp):
ATTGATATTAAAATCTCAAAAACAAAATTCC
Found at i:32548252 original size:13 final size:13
Alignment explanation
Indices: 32548234--32548261 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32548224 CCTTATTAAA
32548234 AGCTGGCCAAAGG
1 AGCTGGCCAAAGG
32548247 AGCTGGCCAAAGG
1 AGCTGGCCAAAGG
32548260 AG
1 AG
32548262 TTGATACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.21, G:0.39, T:0.07
Consensus pattern (13 bp):
AGCTGGCCAAAGG
Found at i:32549484 original size:42 final size:42
Alignment explanation
Indices: 32549425--32549508 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
32549415 AATCCTAATT
32549425 GGGAAAAAAATTCTCTTATTCTAATAAACTACTAAAACATAA
1 GGGAAAAAAATTCTCTTATTCTAATAAACTACTAAAACATAA
* *
32549467 GGGAAAATAATTCTCTTATTCTAATAAACTACTAAAAGATAA
1 GGGAAAAAAATTCTCTTATTCTAATAAACTACTAAAACATAA
32549509 AATAAAATAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.49, C:0.13, G:0.08, T:0.30
Consensus pattern (42 bp):
GGGAAAAAAATTCTCTTATTCTAATAAACTACTAAAACATAA
Found at i:32551072 original size:19 final size:18
Alignment explanation
Indices: 32551050--32551089 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
32551040 TGAATAAAAC
*
32551050 TTATCTACCTAAATAAGAT
1 TTATCTAACTAAATAA-AT
32551069 TTATCTAACTAAATAAAT
1 TTATCTAACTAAATAAAT
32551087 TTA
1 TTA
32551090 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.45, C:0.12, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTAACTAAATAAAT
Found at i:32552086 original size:3 final size:3
Alignment explanation
Indices: 32552080--32552129 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
32552070 TCTTTTAAAG
32552080 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
32552128 TA
1 TA
32552130 AAAAGTCAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:32561140 original size:44 final size:44
Alignment explanation
Indices: 32561091--32561485 Score: 368
Period size: 44 Copynumber: 9.0 Consensus size: 44
32561081 TAGCAAATTC
* *
32561091 TGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCT
1 TGTCTTCCTATATTAGTAGCGAAGTAGATCGAAGATGCAGATCT
* * * * *
32561135 TGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAAGCAAATCT
1 TGTCTTCCTATATTAGTAGCGAAGTAGATCGAAG-ATGCAGATCT
* * * * * * *
32561180 TGTCTTCATGTATTTG-CGTGAAATAGATCGAAGATAGCAGATCA
1 TGTCTTCCTATATTAGTAGCGAAGTAGATCGAAGAT-GCAGATCT
* *
32561224 TGTCTTCCTATACTAGTAG-GAAGTGGATCGAAGATGCAGATCT
1 TGTCTTCCTATATTAGTAGCGAAGTAGATCGAAGATGCAGATCT
* * * * *
32561267 TGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCT
1 TGTCTTCCTATATTAGTAGCGAAGTAGATCGAAG-ATGCAGATCT
* * * * *
32561312 TGTCTTCATGTATTAG-CGTGAAGTAGATCGAAGATAGCAGGTCT
1 TGTCTTCCTATATTAGTAGCGAAGTAGATCGAAGAT-GCAGATCT
* * *
32561356 TGTCTTCCTATATTGGTAG-GAAGTGGATCAAAGATGCAGATCT
1 TGTCTTCCTATATTAGTAGCGAAGTAGATCGAAGATGCAGATCT
* * * * *
32561399 TGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCT
1 TGTCTTCCTATATTAGTAGCGAAGTAGATCGAAG-ATGCAGATCT
* * *
32561444 TGTCTTCATATATTAG-CGTGAAGTAGATCGAAGATAGCAGAT
1 TGTCTTCCTATATTAGTAGCGAAGTAGATCGAAGAT-GCAGAT
32561486 TTTGCGTTCC
Statistics
Matches: 281, Mismatches: 60, Indels: 20
0.78 0.17 0.06
Matches are distributed among these distances:
43 49 0.17
44 170 0.60
45 62 0.22
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (44 bp):
TGTCTTCCTATATTAGTAGCGAAGTAGATCGAAGATGCAGATCT
Found at i:32561295 original size:88 final size:90
Alignment explanation
Indices: 32561091--32561485 Score: 446
Period size: 88 Copynumber: 4.5 Consensus size: 90
32561081 TAGCAAATTC
*
32561091 TGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATACTAGTGGC
1 TGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTAGTGGC
*
32561155 GAAGTAGATCGAAGAAAGCAAATCT
66 GAAGTAGATCGAAGAAAGCAGATCT
* * * * * * * * *
32561180 TGTCTTCATGTATTTG-CGTGAAATAGATCGAAGATAGCAGATCATGTCTTCCTATACTAGTAG-
1 TGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTAGTGGC
* *
32561243 GAAGTGGATCGAAG-ATGCAGATCT
66 GAAGTAGATCGAAGAAAGCAGATCT
* * * * *** * * *
32561267 TGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAG-CGT
1 TGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTAGTGGC
* *
32561331 GAAGTAGATCGAAGATAGCAGGTCT
66 GAAGTAGATCGAAGAAAGCAGATCT
* * *
32561356 TGTCTTCCTATATTGGTAG-GAAGTGGATCAAAGAT-GCAGATCTTGTCTTCCCATACTGGTGGC
1 TGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTAGTGGC
32561419 GAAGTAGATCGAAGAAAGCAGATCT
66 GAAGTAGATCGAAGAAAGCAGATCT
* * * *
32561444 TGTCTTCATATATTAG-CGTGAAGTAGATCGAAGATAGCAGAT
1 TGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAGCAGAT
32561486 TTTGCGTTCC
Statistics
Matches: 248, Mismatches: 51, Indels: 14
0.79 0.16 0.04
Matches are distributed among these distances:
87 40 0.16
88 142 0.57
89 66 0.27
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (90 bp):
TGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTAGTGGC
GAAGTAGATCGAAGAAAGCAGATCT
Found at i:32561496 original size:132 final size:132
Alignment explanation
Indices: 32561076--32561485 Score: 696
Period size: 132 Copynumber: 3.1 Consensus size: 132
32561066 GCAGATCAGT
*
32561076 GAAGATAGCAAAT-TCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCT
1 GAAGATAGCAGATCT-TGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCT
* * * *
32561140 TCCCATACTAGTGGCGAAGTAGATCGAAGAAAGCAAATCTTGTCTTCATGTATTTGCGTGAAATA
64 TCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGTA
32561205 GATC
129 GATC
* * *
32561209 GAAGATAGCAGATCATGTCTTCCTATACTAGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
32561274 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGTAGA
66 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGTAGA
32561339 TC
131 TC
* *
32561341 GAAGATAGCAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
*
32561406 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTAGCGTGAAGTAGA
66 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGTAGA
32561471 TC
131 TC
32561473 GAAGATAGCAGAT
1 GAAGATAGCAGAT
32561486 TTTGCGTTCC
Statistics
Matches: 261, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
132 232 0.89
133 29 0.11
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (132 bp):
GAAGATAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGTAGA
TC
Found at i:32561591 original size:88 final size:88
Alignment explanation
Indices: 32561477--32561708 Score: 295
Period size: 88 Copynumber: 2.6 Consensus size: 88
32561467 TAGATCGAAG
* * ** * * * *
32561477 ATAGCAGATTTTGCGTTCCTGTACCGATAGCGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGACTCCCTA
* ** *
32561542 GGTTGCATTGGAGCAGGCTAAAA
66 GGTTACAACGAAGCAGGCTAAAA
* *
32561565 ATAGCAGATCTTGCCTTCCTACACCGACAGCGAAGCAAATCGAAGACACCAGCCTTGACTCTCTA
1 ATAGCAGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGACTCCCTA
*
32561630 GGTTATAACGAAGCAGGCTAAAA
66 GGTTACAACGAAGCAGGCTAAAA
* *
32561653 ATAACAGATCTTGCCTTCCTACACCGACAGCGAAGCAGATC-AATGACCCCAGCCTT
1 ATAGCAGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCGAA-GACACCAGCCTT
32561709 ATCTCCTTGG
Statistics
Matches: 125, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
87 2 0.02
88 123 0.98
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGACTCCCTA
GGTTACAACGAAGCAGGCTAAAA
Found at i:32561771 original size:44 final size:44
Alignment explanation
Indices: 32561708--32562208 Score: 444
Period size: 44 Copynumber: 11.7 Consensus size: 44
32561698 ACCCCAGCCT
*
32561708 TATCTCCTTGGTCAGCAGTGGAATAGGTTAAAGATTGTAAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTAAATCC
* * *
32561752 TATCTCCCTGGTCAGCAGTGGAATAGATTGAAGATTG-AGAATTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTA-AATCC
* * *
32561796 TATCTCCCTGGGCAGTAGTGGAATAGATT-AA-A--G--AATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTAAATCC
* * * ** * * * *
32561834 TATCTCTCTAGACAATAGTGAAATATGTTAAAGACTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTAAATCC
* * * * *
32561878 TATCTCCCTAGACAGCAGTGGAATATGTTAAAGATTGTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTAAATCC
*
32561922 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAA-ATTG-AGAATTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTT-AAAGATTGTA-AATCC
* * *
32561966 TATCTCCCTGGGCAGTAGTGGAATAGATT-AA-A--G--AATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTAAATCC
* * *
32562004 TATCTCCCTGGACAGCAGTGAAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTAAATCC
* * *
32562048 TATCTCACTGGTCAGCAGTGGAATAGGTTGAAGATTG-AGAATTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTA-AATCC
* * * **
32562092 TATCTCCCT-GTGCAGTAGTGGAATAGATTGAAGATTGTAGGTCC
1 TATCTCCCTGGT-CAGCAGTGGAATAGGTTAAAGATTGTAAATCC
* * *
32562136 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATCGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTAAATCC
* * *
32562180 TATCT-CCTGGAGCAGCAGTAGAGTAGGTT
1 TATCTCCCTGG-TCAGCAGTGGAATAGGTT
32562209 GAAAATAGCA
Statistics
Matches: 382, Mismatches: 55, Indels: 40
0.80 0.12 0.08
Matches are distributed among these distances:
38 55 0.14
39 4 0.01
40 4 0.01
42 6 0.02
43 10 0.03
44 297 0.78
45 6 0.02
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTAAATCC
Found at i:32561942 original size:126 final size:125
Alignment explanation
Indices: 32561724--32562186 Score: 431
Period size: 126 Copynumber: 3.6 Consensus size: 125
32561714 CTTGGTCAGC
* * *
32561724 AGTGGAATAGGTTAAAGATTGTAAATCCTATCTCCCTGGTCAGCAGTGGAATAGATTGAAGATTG
1 AGTGGAATA-GTTAAAGA-TGTGAATCCTATCTCCCTGGACAGCAGTGGAATAG-TTAAAGATTG
* * * * *
32561789 AGAATTCTATCTCCCTGGGCAGTAGTGGAATAGATT-AA-AGAATCCTATCTCTCTAGACAAT
63 TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGATTAAATAGAATCCTATCTCCCTAGACAAT
* *
32561850 AGTGAAATATGTTAAAGACTGTGAATCCTATCTCCCTAGACAGCAGTGGAATATGTTAAAGATTG
1 AGTGGAATA-GTTAAAGA-TGTGAATCCTATCTCCCTGGACAGCAGTGGAATA-GTTAAAGATTG
* * * * *
32561915 TGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGAGAATTCTATCTCCCTGGGCA
63 TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGATT--AAA-T-AGAATCCTATCTCCCTAGACA
*
32561980 GT
124 AT
*
32561982 AGTGGAATAGATT-AA-A---GAATCCTATCTCCCTGGACAGCAGTGAAATAGGTTAAAGATTGT
1 AGTGGAATAG-TTAAAGATGTGAATCCTATCTCCCTGGACAGCAGTGGAATA-GTTAAAGATTGT
* * * *
32562042 GAATCCTATCTCACTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCT-GTGCA
64 GAATCCTATCTCCCTGGTCAGCAGTGGAATAGATT-AA-A-T-AGAATCCTATCTCCCTAG-ACA
*
32562106 GT
124 AT
* * * * *
32562108 AGTGGAATAGATTGAAGAT-TGTAGGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATC
1 AGTGGAATAG-TTAAAGATGTG-A-ATCCTATCTCCCTGGACAGCAGTGGAATA-GTTAAAGATT
32562172 GTGAATCCTATCTCC
62 GTGAATCCTATCTCC
32562187 TGGAGCAGCA
Statistics
Matches: 290, Mismatches: 31, Indels: 26
0.84 0.09 0.07
Matches are distributed among these distances:
125 3 0.01
126 198 0.68
127 3 0.01
128 1 0.00
129 2 0.01
130 2 0.01
131 4 0.01
132 77 0.27
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (125 bp):
AGTGGAATAGTTAAAGATGTGAATCCTATCTCCCTGGACAGCAGTGGAATAGTTAAAGATTGTGA
ATCCTATCTCCCTGGTCAGCAGTGGAATAGATTAAATAGAATCCTATCTCCCTAGACAAT
Found at i:32561990 original size:170 final size:170
Alignment explanation
Indices: 32561720--32562161 Score: 654
Period size: 170 Copynumber: 2.6 Consensus size: 170
32561710 TCTCCTTGGT
*
32561720 CAGCAGTGGAATAGGTTAAAGATTGTAAATCCTATCTCCCTGGTCAGCAGTGGAATAGATTGAAG
1 CAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGATTGAAG
* *
32561785 ATTGAGAATTCTATCTCCCTGGGCAGTAGTGGAATAGATTAAAGAATCCTATCTCTCTAGACAAT
66 ATTGAGAATTCTATCTCCCTGGGCAGTAGTGGAATAGATTAAAGAATCCTATCTCCCTAGACAAC
* *
32561850 AGTGAAATATGTTAAAGACTGTGAATCCTATCTCCCTAGA
131 AGTGAAATAGGTTAAAGACTGTGAATCCTATCTCACTAGA
* * * *
32561890 CAGCAGTGGAATATGTTAAAGATTGTGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAA
1 CAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGATTGAAG
* *
32561955 ATTGAGAATTCTATCTCCCTGGGCAGTAGTGGAATAGATTAAAGAATCCTATCTCCCTGGACAGC
66 ATTGAGAATTCTATCTCCCTGGGCAGTAGTGGAATAGATTAAAGAATCCTATCTCCCTAGACAAC
* * *
32562020 AGTGAAATAGGTTAAAGATTGTGAATCCTATCTCACTGGT
131 AGTGAAATAGGTTAAAGACTGTGAATCCTATCTCACTAGA
* * * *
32562060 CAGCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCT-GTGCAGTAGTGGAATAGATTGAA
1 CAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGT-CAGCAGTGGAATAGATTGAA
* * * *
32562124 GATTGTAG-GTCCTATCTCCCTGGTCAGCAGTGGAATAG
65 GATTG-AGAATTCTATCTCCCTGGGCAGTAGTGGAATAG
32562162 GTTGAAGATC
Statistics
Matches: 244, Mismatches: 26, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
169 2 0.01
170 240 0.98
171 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (170 bp):
CAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGATTGAAG
ATTGAGAATTCTATCTCCCTGGGCAGTAGTGGAATAGATTAAAGAATCCTATCTCCCTAGACAAC
AGTGAAATAGGTTAAAGACTGTGAATCCTATCTCACTAGA
Found at i:32562657 original size:44 final size:44
Alignment explanation
Indices: 32562560--32562658 Score: 117
Period size: 44 Copynumber: 2.2 Consensus size: 44
32562550 GAAGATGGCA
*** * * *
32562560 AATCTTATCTCCCTAAAGTTGCAGTGGAGCGGTTTGAAGCCAAT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAACCAAG
* *
32562604 AATCCTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAACCACG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAACCAAG
*
32562648 GATCTTATCTC
1 AATCTTATCTC
32562659 TCTGAAGGTA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAACCAAG
Found at i:32562805 original size:45 final size:45
Alignment explanation
Indices: 32562690--32562851 Score: 148
Period size: 45 Copynumber: 3.6 Consensus size: 45
32562680 ATCACATCGG
* * *
32562690 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCGA
1 GTCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCAA
* * * * * *
32562735 GTCTGATTTCCTTGAAGTTGTAGTGGAGCAGACTCAAGGAAGTAA
1 GTCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCAA
* * * * *
32562780 GTCTCATCCCCCTGAAATTGCAGTGGGGCAGACTAAATAAA-CAA
1 GTCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCAA
* * *
32562824 ATC-CTATCTCCCTAAAGTTGTAGTGGAG
1 GTCTC-ATCTCCCTGAAGTTGCAGTGGAG
32562852 TGGATTAGAA
Statistics
Matches: 91, Mismatches: 25, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
43 1 0.01
44 22 0.24
45 68 0.75
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (45 bp):
GTCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCAA
Found at i:32574074 original size:22 final size:20
Alignment explanation
Indices: 32574035--32574081 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
32574025 AATAAAGCTG
32574035 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
32574054 ATAATAGATATAATTATATATTA
1 ATAATA-AT-TAA-TATATATTA
32574077 ATAAT
1 ATAAT
32574082 TATCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 3 0.12
22 8 0.33
23 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Found at i:32576404 original size:9 final size:9
Alignment explanation
Indices: 32576390--32576426 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
32576380 TACAGTTTGA
32576390 TATTCGAAT
1 TATTCGAAT
32576399 TATTCGAAT
1 TATTCGAAT
32576408 TATTC-AAGT
1 TATTCGAA-T
32576417 TATTCGAAT
1 TATTCGAAT
32576426 T
1 T
32576427 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 2 0.08
9 22 0.85
10 2 0.08
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:32576497 original size:9 final size:9
Alignment explanation
Indices: 32576480--32576510 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32576470 TCGAGTTGAT
32576480 TCGAATAAC
1 TCGAATAAC
*
32576489 TCGATTAAC
1 TCGAATAAC
32576498 TCGAATAAC
1 TCGAATAAC
32576507 TCGA
1 TCGA
32576511 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:32583576 original size:753 final size:753
Alignment explanation
Indices: 32582130--32583635 Score: 3012
Period size: 753 Copynumber: 2.0 Consensus size: 753
32582120 TTTTTCCGTG
32582130 GCTTGACTAGTTGCTCCGTTCTTCCTTCTCCGTTGTCCTCGTCGACCAAGGCTGGTATGAACACT
1 GCTTGACTAGTTGCTCCGTTCTTCCTTCTCCGTTGTCCTCGTCGACCAAGGCTGGTATGAACACT
32582195 TAATTGCTGCTCCAAATAGCTGATAAATGCCCCTTTTCCAATAGGAGATATCGATAAGAGAGCAA
66 TAATTGCTGCTCCAAATAGCTGATAAATGCCCCTTTTCCAATAGGAGATATCGATAAGAGAGCAA
32582260 GGGAATTATGGAATGGAAAAGAAGAGAGAAAGTGGAGAAAAGAGAGGAAATATATGGATGTTTAA
131 GGGAATTATGGAATGGAAAAGAAGAGAGAAAGTGGAGAAAAGAGAGGAAATATATGGATGTTTAA
32582325 GTTGTGTTTTTAAAATGACCAGCCTAAGGGGGTTTTTATAGCTGAGGAGGGCTGCTAAAAATAGC
196 GTTGTGTTTTTAAAATGACCAGCCTAAGGGGGTTTTTATAGCTGAGGAGGGCTGCTAAAAATAGC
32582390 TAAAATTATCAGCCAAAGAGCCCTCCCTTGACCAGCCACACATGTGGCAAGGTTAATAGTTTCAA
261 TAAAATTATCAGCCAAAGAGCCCTCCCTTGACCAGCCACACATGTGGCAAGGTTAATAGTTTCAA
32582455 CTTTGCTAAATTAGGCTTGGGGCAATTCTATAAAGCCACCAATTGTGGAGGGGTTTGAATGCAAC
326 CTTTGCTAAATTAGGCTTGGGGCAATTCTATAAAGCCACCAATTGTGGAGGGGTTTGAATGCAAC
32582520 TTGAACAAGTCTTCAAGGGCCTCTTTGCAAGCTTAAATAATCAGCTAATGAGCTGATTTGGGTTA
391 TTGAACAAGTCTTCAAGGGCCTCTTTGCAAGCTTAAATAATCAGCTAATGAGCTGATTTGGGTTA
32582585 GCTCTTTGGACGGTTTTTGGGCTGTCCATTTCTTGGTCGGTTCGGTTCACTCGGTTTAGTTCAAC
456 GCTCTTTGGACGGTTTTTGGGCTGTCCATTTCTTGGTCGGTTCGGTTCACTCGGTTTAGTTCAAC
32582650 TGGACCAGTATTTCATAATTATTTAATAATAATTTATTAACCCAAATTAAATTGGATATAAATTA
521 TGGACCAGTATTTCATAATTATTTAATAATAATTTATTAACCCAAATTAAATTGGATATAAATTA
32582715 AAATTAATTATATTATAAATCATTACATATTATTTTGGACCGTCTTAGGCTGAAATTTAGTTCGC
586 AAATTAATTATATTATAAATCATTACATATTATTTTGGACCGTCTTAGGCTGAAATTTAGTTCGC
32582780 CTTGATACTTCAAATTGCTTCTCGGTTTTGCGCTTTTAGCAGTATCTGTCGAGCCATTTTTCACC
651 CTTGATACTTCAAATTGCTTCTCGGTTTTGCGCTTTTAGCAGTATCTGTCGAGCCATTTTTCACC
32582845 CTTTGTGCAAATTTGTCGAAAATAACCGAAATTCATAA
716 CTTTGTGCAAATTTGTCGAAAATAACCGAAATTCATAA
32582883 GCTTGACTAGTTGCTCCGTTCTTCCTTCTCCGTTGTCCTCGTCGACCAAGGCTGGTATGAACACT
1 GCTTGACTAGTTGCTCCGTTCTTCCTTCTCCGTTGTCCTCGTCGACCAAGGCTGGTATGAACACT
32582948 TAATTGCTGCTCCAAATAGCTGATAAATGCCCCTTTTCCAATAGGAGATATCGATAAGAGAGCAA
66 TAATTGCTGCTCCAAATAGCTGATAAATGCCCCTTTTCCAATAGGAGATATCGATAAGAGAGCAA
32583013 GGGAATTATGGAATGGAAAAGAAGAGAGAAAGTGGAGAAAAGAGAGGAAATATATGGATGTTTAA
131 GGGAATTATGGAATGGAAAAGAAGAGAGAAAGTGGAGAAAAGAGAGGAAATATATGGATGTTTAA
32583078 GTTGTGTTTTTAAAATGACCAGCCTAAGGGGGTTTTTATAGCTGAGGAGGGCTGCTAAAAATAGC
196 GTTGTGTTTTTAAAATGACCAGCCTAAGGGGGTTTTTATAGCTGAGGAGGGCTGCTAAAAATAGC
32583143 TAAAATTATCAGCCAAAGAGCCCTCCCTTGACCAGCCACACATGTGGCAAGGTTAATAGTTTCAA
261 TAAAATTATCAGCCAAAGAGCCCTCCCTTGACCAGCCACACATGTGGCAAGGTTAATAGTTTCAA
32583208 CTTTGCTAAATTAGGCTTGGGGCAATTCTATAAAGCCACCAATTGTGGAGGGGTTTGAATGCAAC
326 CTTTGCTAAATTAGGCTTGGGGCAATTCTATAAAGCCACCAATTGTGGAGGGGTTTGAATGCAAC
32583273 TTGAACAAGTCTTCAAGGGCCTCTTTGCAAGCTTAAATAATCAGCTAATGAGCTGATTTGGGTTA
391 TTGAACAAGTCTTCAAGGGCCTCTTTGCAAGCTTAAATAATCAGCTAATGAGCTGATTTGGGTTA
32583338 GCTCTTTGGACGGTTTTTGGGCTGTCCATTTCTTGGTCGGTTCGGTTCACTCGGTTTAGTTCAAC
456 GCTCTTTGGACGGTTTTTGGGCTGTCCATTTCTTGGTCGGTTCGGTTCACTCGGTTTAGTTCAAC
32583403 TGGACCAGTATTTCATAATTATTTAATAATAATTTATTAACCCAAATTAAATTGGATATAAATTA
521 TGGACCAGTATTTCATAATTATTTAATAATAATTTATTAACCCAAATTAAATTGGATATAAATTA
32583468 AAATTAATTATATTATAAATCATTACATATTATTTTGGACCGTCTTAGGCTGAAATTTAGTTCGC
586 AAATTAATTATATTATAAATCATTACATATTATTTTGGACCGTCTTAGGCTGAAATTTAGTTCGC
32583533 CTTGATACTTCAAATTGCTTCTCGGTTTTGCGCTTTTAGCAGTATCTGTCGAGCCATTTTTCACC
651 CTTGATACTTCAAATTGCTTCTCGGTTTTGCGCTTTTAGCAGTATCTGTCGAGCCATTTTTCACC
32583598 CTTTGTGCAAATTTGTCGAAAATAACCGAAATTCATAA
716 CTTTGTGCAAATTTGTCGAAAATAACCGAAATTCATAA
32583636 AAATTAATTA
Statistics
Matches: 753, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
753 753 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (753 bp):
GCTTGACTAGTTGCTCCGTTCTTCCTTCTCCGTTGTCCTCGTCGACCAAGGCTGGTATGAACACT
TAATTGCTGCTCCAAATAGCTGATAAATGCCCCTTTTCCAATAGGAGATATCGATAAGAGAGCAA
GGGAATTATGGAATGGAAAAGAAGAGAGAAAGTGGAGAAAAGAGAGGAAATATATGGATGTTTAA
GTTGTGTTTTTAAAATGACCAGCCTAAGGGGGTTTTTATAGCTGAGGAGGGCTGCTAAAAATAGC
TAAAATTATCAGCCAAAGAGCCCTCCCTTGACCAGCCACACATGTGGCAAGGTTAATAGTTTCAA
CTTTGCTAAATTAGGCTTGGGGCAATTCTATAAAGCCACCAATTGTGGAGGGGTTTGAATGCAAC
TTGAACAAGTCTTCAAGGGCCTCTTTGCAAGCTTAAATAATCAGCTAATGAGCTGATTTGGGTTA
GCTCTTTGGACGGTTTTTGGGCTGTCCATTTCTTGGTCGGTTCGGTTCACTCGGTTTAGTTCAAC
TGGACCAGTATTTCATAATTATTTAATAATAATTTATTAACCCAAATTAAATTGGATATAAATTA
AAATTAATTATATTATAAATCATTACATATTATTTTGGACCGTCTTAGGCTGAAATTTAGTTCGC
CTTGATACTTCAAATTGCTTCTCGGTTTTGCGCTTTTAGCAGTATCTGTCGAGCCATTTTTCACC
CTTTGTGCAAATTTGTCGAAAATAACCGAAATTCATAA
Found at i:32584470 original size:696 final size:696
Alignment explanation
Indices: 32583139--32584530 Score: 2714
Period size: 696 Copynumber: 2.0 Consensus size: 696
32583129 CTGCTAAAAA
32583139 TAGCTAAAATTATCAGCCAAAGAGCCCTCCCTTGACCAGCCACACATGTGGCAAGGTTAATAGTT
1 TAGCTAAAATTATCAGCCAAAGAGCCCTCCCTTGACCAGCCACACATGTGGCAAGGTTAATAGTT
* *
32583204 TCAACTTTGCTAAATTAGGCTTGGGGCAATTCTATAAAGCCACCAATTGTGGAGGGGTTTGAATG
66 TCAACTTTGCTAAATTAGGCTTGGGGCAAATATATAAAGCCACCAATTGTGGAGGGGTTTGAATG
32583269 CAACTTGAACAAGTCTTCAAGGGCCTCTTTGCAAGCTTAAATAATCAGCTAATGAGCTGATTTGG
131 CAACTTGAACAAGTCTTCAAGGGCCTCTTTGCAAGCTTAAATAATCAGCTAATGAGCTGATTTGG
32583334 GTTAGCTCTTTGGACGGTTTTTGGGCTGTCCATTTCTTGGTCGGTTCGGTTCACTCGGTTTAGTT
196 GTTAGCTCTTTGGACGGTTTTTGGGCTGTCCATTTCTTGGTCGGTTCGGTTCACTCGGTTTAGTT
32583399 CAACTGGACCAGTATTTCATAATTATTTAATAATAATTTATTAACCCAAATTAAATTGGATATAA
261 CAACTGGACCAGTATTTCATAATTATTTAATAATAATTTATTAACCCAAATTAAATTGGATATAA
32583464 ATTAAAATTAATTATATTATAAATCATTACATATTATTTTGGACCGTCTTAGGCTGAAATTTAGT
326 ATTAAAATTAATTATATTATAAATCATTACATATTATTTTGGACCGTCTTAGGCTGAAATTTAGT
32583529 TCGCCTTGATACTTCAAATTGCTTCTCGGTTTTGCGCTTTTAGCAGTATCTGTCGAGCCATTTTT
391 TCGCCTTGATACTTCAAATTGCTTCTCGGTTTTGCGCTTTTAGCAGTATCTGTCGAGCCATTTTT
32583594 CACCCTTTGTGCAAATTTGTCGAAAATAACCGAAATTCATAAAAATTAATTATAAAATTAACTAA
456 CACCCTTTGTGCAAATTTGTCGAAAATAACCGAAATTCATAAAAATTAATTATAAAATTAACTAA
*
32583659 AATTCAACATGTTCATATTTTAAGTGCACTTTAATTATTTTTTAAAAATTAATTATTTTTTCGAC
521 AATTCAACATGTTCATATTTTAAGTGCACTTTAATTATTTTGTAAAAATTAATTATTTTTTCGAC
32583724 AAGAATTTTATCGAAACTGTATGATTTTAAGTTAAAAAGGATATGTAAAAATGTGTAAATTTTCG
586 AAGAATTTTATCGAAACTGTATGATTTTAAGTTAAAAAGGATATGTAAAAATGTGTAAATTTTCG
32583789 TGTTTTCAGCAAGACATTTTTGGCTTGGGCCAGGCCCGAATTCAGT
651 TGTTTTCAGCAAGACATTTTTGGCTTGGGCCAGGCCCGAATTCAGT
** *
32583835 TAGCTAAAATTATCAGCCAAAGAGCCCTCCCTTGGTC-GACCACACATGTGGCAAGGTTGATAGT
1 TAGCTAAAATTATCAGCCAAAGAGCCCTCCCTTGACCAG-CCACACATGTGGCAAGGTTAATAGT
32583899 TTCAACTTTGCTAAATTAGGCTTGGGGCAAATATATAAAGCCACCAATTGTGGAGGGGTTTGAAT
65 TTCAACTTTGCTAAATTAGGCTTGGGGCAAATATATAAAGCCACCAATTGTGGAGGGGTTTGAAT
32583964 GCAACTTGAACAAGTCTTCAAGGGCCTCTTTGCAAGCTTAAATAATCAGCTAATGAGCTGATTTG
130 GCAACTTGAACAAGTCTTCAAGGGCCTCTTTGCAAGCTTAAATAATCAGCTAATGAGCTGATTTG
32584029 GGTTAGCTCTTTGGACGGTTTTTGGGCTGTCCATTTCTTGGTCGGTTCGGTTCACTCGGTTTAGT
195 GGTTAGCTCTTTGGACGGTTTTTGGGCTGTCCATTTCTTGGTCGGTTCGGTTCACTCGGTTTAGT
32584094 TCAACTGGACCAGTATTTCATAATTATTTAATAATAATTTATTAACCCAAATTAAATTGGATATA
260 TCAACTGGACCAGTATTTCATAATTATTTAATAATAATTTATTAACCCAAATTAAATTGGATATA
32584159 AATTAAAATTAATTATATTATAAATCATTACATATTATTTTGGACCGTCTTAGGCTGAAATTTAG
325 AATTAAAATTAATTATATTATAAATCATTACATATTATTTTGGACCGTCTTAGGCTGAAATTTAG
32584224 TTCGCCTTGATACTTCAAATTGCTTCTCGGTTTTGCGCTTTTAGCAGTATCTGTCGAGCCATTTT
390 TTCGCCTTGATACTTCAAATTGCTTCTCGGTTTTGCGCTTTTAGCAGTATCTGTCGAGCCATTTT
32584289 TCACCCTTTGTGCAAATTTGTCGAAAATAACCGAAATTCATAAAAATTAATTATAAAATTAACTA
455 TCACCCTTTGTGCAAATTTGTCGAAAATAACCGAAATTCATAAAAATTAATTATAAAATTAACTA
32584354 AAATTCAACATGTTCATATTTTAAGTGCACTTTAATTATTTTGTAAAAATTAATTATTTTTTCGA
520 AAATTCAACATGTTCATATTTTAAGTGCACTTTAATTATTTTGTAAAAATTAATTATTTTTTCGA
32584419 CAAGAATTTTATCGAAACTGTATGATTTTAAGTTAAAAAGGATATGTAAAAATGTGTAAATTTTC
585 CAAGAATTTTATCGAAACTGTATGATTTTAAGTTAAAAAGGATATGTAAAAATGTGTAAATTTTC
32584484 GTGTTTTCAGCAAGACATTTTTGGCTTGGGCCAGGCCCGAATTCAGT
650 GTGTTTTCAGCAAGACATTTTTGGCTTGGGCCAGGCCCGAATTCAGT
32584531 AAAGGACAAA
Statistics
Matches: 689, Mismatches: 6, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
695 1 0.00
696 688 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (696 bp):
TAGCTAAAATTATCAGCCAAAGAGCCCTCCCTTGACCAGCCACACATGTGGCAAGGTTAATAGTT
TCAACTTTGCTAAATTAGGCTTGGGGCAAATATATAAAGCCACCAATTGTGGAGGGGTTTGAATG
CAACTTGAACAAGTCTTCAAGGGCCTCTTTGCAAGCTTAAATAATCAGCTAATGAGCTGATTTGG
GTTAGCTCTTTGGACGGTTTTTGGGCTGTCCATTTCTTGGTCGGTTCGGTTCACTCGGTTTAGTT
CAACTGGACCAGTATTTCATAATTATTTAATAATAATTTATTAACCCAAATTAAATTGGATATAA
ATTAAAATTAATTATATTATAAATCATTACATATTATTTTGGACCGTCTTAGGCTGAAATTTAGT
TCGCCTTGATACTTCAAATTGCTTCTCGGTTTTGCGCTTTTAGCAGTATCTGTCGAGCCATTTTT
CACCCTTTGTGCAAATTTGTCGAAAATAACCGAAATTCATAAAAATTAATTATAAAATTAACTAA
AATTCAACATGTTCATATTTTAAGTGCACTTTAATTATTTTGTAAAAATTAATTATTTTTTCGAC
AAGAATTTTATCGAAACTGTATGATTTTAAGTTAAAAAGGATATGTAAAAATGTGTAAATTTTCG
TGTTTTCAGCAAGACATTTTTGGCTTGGGCCAGGCCCGAATTCAGT
Found at i:32584697 original size:30 final size:30
Alignment explanation
Indices: 32584663--32584722 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
32584653 TATTTTATTA
32584663 TTAATTTTGTTATTATTTTAAAGACATTTG
1 TTAATTTTGTTATTATTTTAAAGACATTTG
* *
32584693 TTAATTTTGTTATTATTTTAGAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGACATTTG
32584723 CTTATTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGACATTTG
Found at i:32584855 original size:12 final size:12
Alignment explanation
Indices: 32584820--32584857 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
32584810 ATTTTTTTAT
*
32584820 ATATTAAAATT-
1 ATATAAAAATTA
32584831 ATATAAAAA-TA
1 ATATAAAAATTA
32584842 ATATAAAAATTA
1 ATATAAAAATTA
32584854 ATAT
1 ATAT
32584858 GAGCGGGTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
10 1 0.04
11 17 0.71
12 6 0.25
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
ATATAAAAATTA
Found at i:32590512 original size:48 final size:48
Alignment explanation
Indices: 32590411--32590517 Score: 126
Period size: 48 Copynumber: 2.2 Consensus size: 48
32590401 AAGTCACTAG
* * * *
32590411 ACACTATTACTCATTATTTGTGTAGGTTTAACCCTATCGGATAATCAA
1 ACACTAGTACTCATTATTCGTGTAGGTTTAACCCAATCGGATAACCAA
* *
32590459 ACACTAGTATTCATTATTCGTGTAGGTTTAACCCAAAT-GGGTAACCAA
1 ACACTAGTACTCATTATTCGTGTAGGTTTAACCC-AATCGGATAACCAA
* *
32590507 GCACTATTACT
1 ACACTAGTACT
32590518 TTCACTGTGT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 47 0.96
49 2 0.04
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.35
Consensus pattern (48 bp):
ACACTAGTACTCATTATTCGTGTAGGTTTAACCCAATCGGATAACCAA
Found at i:32591903 original size:10 final size:9
Alignment explanation
Indices: 32591881--32591914 Score: 50
Period size: 10 Copynumber: 3.6 Consensus size: 9
32591871 TTGCAACAAC
32591881 AAAATAAAT
1 AAAATAAAT
32591890 AAAATAACAT
1 AAAATAA-AT
32591900 AAAATAGAAT
1 AAAATA-AAT
32591910 AAAAT
1 AAAAT
32591915 GAAAATAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.30
10 15 0.65
11 1 0.04
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (9 bp):
AAAATAAAT
Found at i:32592094 original size:4 final size:4
Alignment explanation
Indices: 32592085--32592145 Score: 54
Period size: 4 Copynumber: 14.5 Consensus size: 4
32592075 TTGAAATAAT
*
32592085 AATA AATA AAT- AATA AATGAA AATA AATA AGTTA AAGTA AATA AATA
1 AATA AATA AATA AATA AAT--A AATA AATA A-ATA AA-TA AATA AATA
32592132 AA-A TAATA AATA AA
1 AATA -AATA AATA AA
32592146 AAAAGAGTCT
Statistics
Matches: 48, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
3 4 0.08
4 32 0.67
5 8 0.17
6 4 0.08
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (4 bp):
AATA
Found at i:32592097 original size:14 final size:15
Alignment explanation
Indices: 32592078--32592145 Score: 66
Period size: 17 Copynumber: 4.2 Consensus size: 15
32592068 TGAAAAGTTG
32592078 AAATAAT-AATAAAT
1 AAATAATAAATAAAT
32592092 AAATAATAAATGAAAAT
1 AAATAATAAAT--AAAT
32592109 AAATAAGTTAAAGTAAAT
1 AAATAA--TAAA-TAAAT
*
32592127 AAATAAAATAATAAAT
1 AAATAATA-AATAAAT
32592143 AAA
1 AAA
32592146 AAAAGAGTCT
Statistics
Matches: 46, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
14 7 0.15
15 3 0.07
16 9 0.20
17 12 0.26
18 10 0.22
19 4 0.09
20 1 0.02
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (15 bp):
AAATAATAAATAAAT
Found at i:32593796 original size:44 final size:45
Alignment explanation
Indices: 32593739--32593939 Score: 129
Period size: 44 Copynumber: 4.4 Consensus size: 45
32593729 TTATCGTTTT
* * * *
32593739 AATCCGCTTCACTGCAACTTTAGGGAAATATGA-TTAGTAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGACTTAGTAGCTTC
* * * *
32593783 AATCTGCTCCACTGCCACTTCAGGGAGATAAGATTTGTAATTTATAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGA-CT-T-A---GTAGCTTC
* * * * *
32593834 AATCTGTTCCACTGTAACTTCAGGGAAATAAGA-TTTGCTATCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGACTTAG-TAGCTTC
* * * * * **
32593879 AGTCTGCTCCACCGCAACTTAAGAGAGATAAGACTT-GTATATTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGACTTAGTAGCTTC
*
32593923 AATCTGCCCCACTGCAA
1 AATCTGCTCCACTGCAA
32593940 TTTTAAGGGG
Statistics
Matches: 121, Mismatches: 27, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
44 46 0.38
45 32 0.26
46 3 0.02
47 1 0.01
48 2 0.02
49 1 0.01
51 36 0.30
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGGAAATAAGACTTAGTAGCTTC
Found at i:32593910 original size:45 final size:44
Alignment explanation
Indices: 32593861--32593960 Score: 103
Period size: 44 Copynumber: 2.2 Consensus size: 44
32593851 CTTCAGGGAA
* * * *
32593861 ATAAGATTTGCTATCTTTAGTCTGCTCCACCGCAA-CTTAAGAGAG
1 ATAAGATTTG-TATATTCAATCTGCCCCACCGCAATCTTAAG-GAG
* * * *
32593906 ATAAGACTTGTATATTCAATCTGCCCCACTGCAATTTTAAGGGG
1 ATAAGATTTGTATATTCAATCTGCCCCACCGCAATCTTAAGGAG
32593950 ATAAGATTTGT
1 ATAAGATTTGT
32593961 GGTTTCACTG
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
44 31 0.69
45 14 0.31
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (44 bp):
ATAAGATTTGTATATTCAATCTGCCCCACCGCAATCTTAAGGAG
Found at i:32605325 original size:4 final size:4
Alignment explanation
Indices: 32605312--32605376 Score: 55
Period size: 4 Copynumber: 15.8 Consensus size: 4
32605302 TGAAAATTTG
*
32605312 AAAT -AAT AAAT AAAT -AAT AAAT GAAAAT AAAT AAGTT AAAGT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT --AAAT AAAT AA-AT AAA-T AAAT
32605358 AAAT AAA- ATAAT AAAT AAA
1 AAAT AAAT A-AAT AAAT AAA
32605377 AAAAGAGTCT
Statistics
Matches: 51, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
3 7 0.14
4 32 0.63
5 8 0.16
6 4 0.08
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:32605330 original size:14 final size:15
Alignment explanation
Indices: 32605316--32605376 Score: 59
Period size: 17 Copynumber: 3.7 Consensus size: 15
32605306 AATTTGAAAT
32605316 AATAAATAAATAATA
1 AATAAATAAATAATA
32605331 AATGAAAATAAATAAGTTA
1 AAT--AAATAAATAA--TA
*
32605350 AAGTAAATAAATAAAA
1 AA-TAAATAAATAATA
32605366 TAATAAATAAA
1 -AATAAATAAA
32605377 AAAAGAGTCT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
15 3 0.08
16 9 0.23
17 12 0.31
18 10 0.26
19 4 0.10
20 1 0.03
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (15 bp):
AATAAATAAATAATA
Found at i:32609682 original size:13 final size:13
Alignment explanation
Indices: 32609664--32609689 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32609654 TAAAGGGGCC
32609664 TTGTGTCCTTATT
1 TTGTGTCCTTATT
32609677 TTGTGTCCTTATT
1 TTGTGTCCTTATT
32609690 CGAATTCCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.15, G:0.15, T:0.62
Consensus pattern (13 bp):
TTGTGTCCTTATT
Found at i:32613248 original size:22 final size:22
Alignment explanation
Indices: 32613218--32613261 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
32613208 TATGTTCATG
32613218 ATATATATT-ATAAAAATAATAT
1 ATATATATTCATAAAAA-AATAT
* *
32613240 ATATTTATTCATTAAAAAATAT
1 ATATATATTCATAAAAAAATAT
32613262 TTTATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
ATATATATTCATAAAAAAATAT
Found at i:32613275 original size:22 final size:26
Alignment explanation
Indices: 32613223--32613278 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 26
32613213 TCATGATATA
32613223 TATTATAAAAATAATATATATTTATT
1 TATTATAAAAATAATATATATTTATT
* *
32613249 CATTA-AAAAAT-AT-TTTATTT-TT
1 TATTATAAAAATAATATATATTTATT
32613271 TATTATAA
1 TATTATAA
32613279 CTTATTTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 6 0.23
23 8 0.31
24 2 0.08
25 6 0.23
26 4 0.15
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (26 bp):
TATTATAAAAATAATATATATTTATT
Found at i:32613396 original size:16 final size:14
Alignment explanation
Indices: 32613362--32613408 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
32613352 TTTGAATAAT
*
32613362 TTATAAATTTT-TT
1 TTATAAATTTTATA
32613375 TTATAAAGTTTATATA
1 TTATAAA-TTT-TATA
32613391 TTATAAATTTTATA
1 TTATAAATTTTATA
32613405 TTAT
1 TTAT
32613409 TTTTTACTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 7 0.23
14 11 0.37
15 4 0.13
16 8 0.27
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (14 bp):
TTATAAATTTTATA
Found at i:32618464 original size:14 final size:16
Alignment explanation
Indices: 32618424--32618467 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
32618414 TTTTCAACAT
*
32618424 AAATTAAACTTAATTCA
1 AAATTAAA-TAAATTCA
32618441 AAATTAAATAAATT-A
1 AAATTAAATAAATTCA
32618456 AAA-TAAATAAAT
1 AAATTAAATAAAT
32618468 ATGGGTTGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 9 0.35
15 4 0.15
16 5 0.19
17 8 0.31
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (16 bp):
AAATTAAATAAATTCA
Found at i:32638185 original size:34 final size:35
Alignment explanation
Indices: 32638142--32638238 Score: 115
Period size: 41 Copynumber: 2.6 Consensus size: 35
32638132 ATAATGGGGA
*
32638142 GTTTACATGACCAAATTTTTGA-CCAAATTTTCCT
1 GTTTACATGACCAAATTTTTGATCCAAATTTCCCT
*
32638176 GTTTACATGACCAAATAATATTTGGGATTCCTAATTTCCCT
1 GTTTACATGACCAAAT--T-TTT--GA-TCCAAATTTCCCT
32638217 GTTTACATGACCAAATTTTTGA
1 GTTTACATGACCAAATTTTTGA
32638239 GTTTAGGCAG
Statistics
Matches: 54, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
34 16 0.30
36 3 0.06
37 3 0.06
38 3 0.06
39 3 0.06
41 26 0.48
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (35 bp):
GTTTACATGACCAAATTTTTGATCCAAATTTCCCT
Found at i:32643284 original size:26 final size:26
Alignment explanation
Indices: 32643250--32643317 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
32643240 GTAACTGTAA
*
32643250 ATGCTCACATGAGCTGTGAAATGAGC
1 ATGCTCACACGAGCTGTGAAATGAGC
32643276 ATGCTCACACGAGCTGTGAAATGAGC
1 ATGCTCACACGAGCTGTGAAATGAGC
*
32643302 ATGCTCACACAAGCTG
1 ATGCTCACACGAGCTG
32643318 CGAGTCAGGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.31, C:0.24, G:0.25, T:0.21
Consensus pattern (26 bp):
ATGCTCACACGAGCTGTGAAATGAGC
Found at i:32645642 original size:16 final size:17
Alignment explanation
Indices: 32645623--32645667 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
32645613 GCGATTTAAT
32645623 TATTATTATA-TTTATA
1 TATTATTATACTTTATA
* *
32645639 TATT-TTTTACTTTATT
1 TATTATTATACTTTATA
32645655 TATTATT-TACTTT
1 TATTATTATACTTT
32645668 TTTATTTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 4 0.16
16 19 0.76
17 2 0.08
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (17 bp):
TATTATTATACTTTATA
Found at i:32645654 original size:12 final size:11
Alignment explanation
Indices: 32645633--32645675 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
32645623 TATTATTATA
*
32645633 TTTATATATTT
1 TTTATTTATTT
32645644 TTTACTTTATTT
1 TTTA-TTTATTT
*
32645656 ATTATTTACTTT
1 TTTATTTA-TTT
32645668 TTTATTTA
1 TTTATTTA
32645676 CTTTACCACT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 8 0.30
12 19 0.70
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTATTTATTT
Found at i:32645658 original size:24 final size:23
Alignment explanation
Indices: 32645625--32645680 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 23
32645615 GATTTAATTA
32645625 TTATTATATTTATATA-TTTTTTACT
1 TTATT-TA-TTATATACTTTTTTA-T
*
32645650 TTATTTATTATTTACTTTTTTAT
1 TTATTTATTATATACTTTTTTAT
32645673 TTACTTTA
1 TTA-TTTA
32645681 CCACTGGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 10 0.36
24 13 0.46
25 5 0.18
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (23 bp):
TTATTTATTATATACTTTTTTAT
Found at i:32645676 original size:12 final size:12
Alignment explanation
Indices: 32645641--32645679 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
32645631 TATTTATATA
32645641 TTTTTTACTTTA-
1 TTTTTTA-TTTAC
*
32645653 TTTATTATTTAC
1 TTTTTTATTTAC
32645665 TTTTTTATTTAC
1 TTTTTTATTTAC
32645677 TTT
1 TTT
32645680 ACCACTGGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 4 0.17
12 20 0.83
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTTATTTAC
Found at i:32648419 original size:21 final size:20
Alignment explanation
Indices: 32648395--32648433 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
32648385 GAGAGAGTTC
*
32648395 CATTAGGATTAGAATTAATCA
1 CATTAAGATTA-AATTAATCA
*
32648416 CATTAATATTAAATTAAT
1 CATTAAGATTAAATTAAT
32648434 AAAATATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (20 bp):
CATTAAGATTAAATTAATCA
Found at i:32648513 original size:61 final size:61
Alignment explanation
Indices: 32648417--32648533 Score: 173
Period size: 61 Copynumber: 1.9 Consensus size: 61
32648407 AATTAATCAC
*
32648417 ATTAATATTAAATTAATAAAATATTAACAAGATAAATATTAAATTAAATTTAATATCTCAT
1 ATTAATATTAAATTAATAAAATACTAACAAGATAAATATTAAATTAAATTTAATATCTCAT
* * * *
32648478 ATTAATATTAATTTAATAAAATACTATCTAA-ATAAATATTTAATTTAATTTAATAT
1 ATTAATATTAAATTAATAAAATACTAAC-AAGATAAATATTAAATTAAATTTAATAT
32648534 TAAATTTATT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
61 48 0.96
62 2 0.04
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (61 bp):
ATTAATATTAAATTAATAAAATACTAACAAGATAAATATTAAATTAAATTTAATATCTCAT
Found at i:32648549 original size:17 final size:17
Alignment explanation
Indices: 32648481--32648546 Score: 50
Period size: 17 Copynumber: 4.1 Consensus size: 17
32648471 ATCTCATATT
*
32648481 AATATT-AATTTAATAA
1 AATATTAAATTTAATTA
* * *
32648497 AATACT--ATCTAAATA
1 AATATTAAATTTAATTA
* *
32648512 AATATTTAATTTAATTT
1 AATATTAAATTTAATTA
32648529 AATATTAAATTT-ATTA
1 AATATTAAATTTAATTA
32648545 AA
1 AA
32648547 ATAATATTAT
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
15 11 0.29
16 10 0.26
17 17 0.45
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
AATATTAAATTTAATTA
Found at i:32668521 original size:19 final size:19
Alignment explanation
Indices: 32668494--32668532 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
32668484 CTCTGTTTTA
32668494 CCCTCTGCCTCTTCTGTTC
1 CCCTCTGCCTCTTCTGTTC
*
32668513 CCCTTTGCCTCTTCTGTTC
1 CCCTCTGCCTCTTCTGTTC
32668532 C
1 C
32668533 TTCCTTCTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.00, C:0.46, G:0.10, T:0.44
Consensus pattern (19 bp):
CCCTCTGCCTCTTCTGTTC
Found at i:32672292 original size:91 final size:91
Alignment explanation
Indices: 32672163--32672371 Score: 310
Period size: 91 Copynumber: 2.3 Consensus size: 91
32672153 TTTGATTTTA
* * *
32672163 ATAATTTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTA
1 ATAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTA
* * *
32672228 TATTTAATATTAATTATTTTAAATTGT
65 TATGTAATAATAATTATTTTAAATTAT
*
32672255 ATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTAT
1 ATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
32672320 ATGTAATAATAATTATTTTAAATTAT
66 ATGTAATAATAATTATTTTAAATTAT
*** *
32672346 ACCCATTTATATAAGAAAATTTATTA
1 ATAAATTCATATAAGAAAATTTATTA
32672372 GTTATAATTA
Statistics
Matches: 106, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
91 90 0.85
92 16 0.15
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (91 bp):
ATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
ATGTAATAATAATTATTTTAAATTAT
Found at i:32672340 original size:26 final size:28
Alignment explanation
Indices: 32672286--32672346 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
32672276 TATTATCAAG
* *
32672286 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
32672314 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
32672340 AATTATA
1 AATTATA
32672347 CCCATTTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:32672346 original size:44 final size:43
Alignment explanation
Indices: 32672204--32672346 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
32672194 GAATTTTATG
* *
32672204 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
32672248 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
32672295 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
32672339 AAATTATA
1 AAATTATA
32672347 CCCATTTATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:32672511 original size:120 final size:120
Alignment explanation
Indices: 32672387--32672795 Score: 714
Period size: 120 Copynumber: 3.4 Consensus size: 120
32672377 AATTATTTTA
* * *
32672387 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATATT-AAATTATATTT
32672451 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
32672507 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATATTAAATTATATTTT
32672572 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
32672627 AATTTTA-TAAATTATTTATTTTAATTAAAATATATTTAATAATAATTATATTAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATATTAAATTATATTTT
*
32672691 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
32672746 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
32672796 GCTTAAATAT
Statistics
Matches: 275, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
119 114 0.41
120 159 0.58
121 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATATTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:32672547 original size:15 final size:15
Alignment explanation
Indices: 32672512--32672563 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
32672502 TTAAGAATTT
*
32672512 TATTAAATTAT-ATA
1 TATTTAATTATAATA
32672526 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
32672540 TATTTAATAATAAT-
1 TATTTAATTATAATA
32672554 TATGTTAATT
1 TAT-TTAATT
32672564 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:32672786 original size:15 final size:15
Alignment explanation
Indices: 32672751--32672792 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
32672741 TTAAGAATTT
*
32672751 TATTAAATTAT-ATA
1 TATTTAATTATAATA
32672765 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
32672779 TATTTAATAATAAT
1 TATTTAATTATAAT
32672793 TATGCTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:32673025 original size:45 final size:43
Alignment explanation
Indices: 32672926--32673033 Score: 125
Period size: 45 Copynumber: 2.6 Consensus size: 43
32672916 TTTTCCATTA
32672926 TGCTATTACACCTCTATTCC----ATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTAATTCAACCAAACACAAGAT
* * ***
32672965 TACTATTACGCCTCTATTCCATTATATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTA-ATTCAACCAAACACAAGA-T
32673010 TGCTATTACACCTCTATTCCATTA
1 TGCTATTACACCTCTATTCCATTA
32673034 CACCTCTTTC
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 18 0.32
44 15 0.27
45 23 0.41
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATTAATTCAACCAAACACAAGAT
Found at i:32673046 original size:15 final size:16
Alignment explanation
Indices: 32673014--32673066 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
32673004 TTGATTTGCT
32673014 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
32673030 ATTACACCTCT-TTCC
1 ATTACACCTCTATTCC
* *
32673045 ATTACGCCTCTAATCC
1 ATTACACCTCTATTCC
*
32673061 AATACA
1 ATTACA
32673067 GCGAACCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
15 14 0.44
16 18 0.56
ACGTcount: A:0.28, C:0.36, G:0.02, T:0.34
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:32678104 original size:11 final size:11
Alignment explanation
Indices: 32678083--32678118 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
32678073 CGAATTTTTG
*
32678083 AAAACAAAATA
1 AAAATAAAATA
*
32678094 AAAGTAAAATA
1 AAAATAAAATA
32678105 AAAATAAAATA
1 AAAATAAAATA
32678116 AAA
1 AAA
32678119 TCTCACTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.81, C:0.03, G:0.03, T:0.14
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:32683161 original size:14 final size:14
Alignment explanation
Indices: 32683142--32683171 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32683132 AGTGGGAGAG
*
32683142 GAGAGAAGAGTTGT
1 GAGAGAAGAGATGT
32683156 GAGAGAAGAGATGT
1 GAGAGAAGAGATGT
32683170 GA
1 GA
32683172 ATGAGGGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.43, T:0.17
Consensus pattern (14 bp):
GAGAGAAGAGATGT
Found at i:32689772 original size:11 final size:11
Alignment explanation
Indices: 32689756--32689786 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
32689746 AATTTTTAAA
*
32689756 AAAATAAAAGT
1 AAAATAAAAAT
32689767 AAAATAAAAAT
1 AAAATAAAAAT
32689778 AAAATAAAA
1 AAAATAAAA
32689787 TCTCACTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:32702711 original size:34 final size:34
Alignment explanation
Indices: 32702673--32702754 Score: 121
Period size: 34 Copynumber: 2.4 Consensus size: 34
32702663 CGTACGGACT
*
32702673 TGTTATAAGCATGTTTATTGCTA-CTGTATTGATA
1 TGTTATAAGCATGTTTATTACTATC-GTATTGATA
*
32702707 TGTTATAAGCATGTTTATTACTATCGTATTGATT
1 TGTTATAAGCATGTTTATTACTATCGTATTGATA
*
32702741 TGCTATAAGCATGT
1 TGTTATAAGCATGT
32702755 CATATTGCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
34 43 0.98
35 1 0.02
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46
Consensus pattern (34 bp):
TGTTATAAGCATGTTTATTACTATCGTATTGATA
Found at i:32702916 original size:45 final size:45
Alignment explanation
Indices: 32702862--32702982 Score: 170
Period size: 45 Copynumber: 2.7 Consensus size: 45
32702852 ATCTGTACGG
* * *
32702862 ATGAATGGTTTATCCACACCATATTAGCAGCATTTATCTACATCA
1 ATGAATGGTTTATCCACACCGTACTAGCAGCATTTATCTACACCA
* *** *
32702907 ATGAGTGGTTTATCCACACCGTACTAGCAATTTTTATCTGCACCA
1 ATGAATGGTTTATCCACACCGTACTAGCAGCATTTATCTACACCA
32702952 ATGAATGGTTTATCCACACCGTACTAGCAGC
1 ATGAATGGTTTATCCACACCGTACTAGCAGC
32702983 TTGTTTGCAA
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 65 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (45 bp):
ATGAATGGTTTATCCACACCGTACTAGCAGCATTTATCTACACCA
Found at i:32702971 original size:21 final size:21
Alignment explanation
Indices: 32702862--32702971 Score: 53
Period size: 24 Copynumber: 5.0 Consensus size: 21
32702852 ATCTGTACGG
32702862 ATGAATGGTTTATCCACACCA
1 ATGAATGGTTTATCCACACCA
* * * *
32702883 TATTAGCA-GCATTTATCTACATCA
1 -A-T-GAATG-GTTTATCCACACCA
*
32702907 ATGAGTGGTTTATCCACACCGTA
1 ATGAATGGTTTATCCACACC--A
* * **
32702930 CTAGCAAT-TTTTATCTGCACCA
1 AT-G-AATGGTTTATCCACACCA
32702952 ATGAATGGTTTATCCACACC
1 ATGAATGGTTTATCCACACC
32702972 GTACTAGCAG
Statistics
Matches: 61, Mismatches: 18, Indels: 19
0.62 0.18 0.19
Matches are distributed among these distances:
20 3 0.05
21 22 0.36
22 5 0.08
23 5 0.08
24 24 0.39
25 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.33
Consensus pattern (21 bp):
ATGAATGGTTTATCCACACCA
Done.