Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 106 of 203
Found at i:33613616 original size:39 final size:39
Alignment explanation
Indices: 33613412--33613634 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
33613402 TTGAATGCTG
* * * * *
33613412 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
33613452 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
33613491 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
33613532 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
33613572 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
33613611 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
33613635 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:33613654 original size:79 final size:80
Alignment explanation
Indices: 33613492--33613669 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
33613482 AGATACAAAT
* * * *
33613492 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
33613557 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
33613572 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
33613636 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
33613651 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
33613670 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:33616804 original size:19 final size:18
Alignment explanation
Indices: 33616769--33616808 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
33616759 ATAAAGTTAG
33616769 TTTTGTATTTTAATGGTCA
1 TTTTGTATTTTAATGGT-A
**
33616788 TTTTGTATTTTGTTGGTA
1 TTTTGTATTTTAATGGTA
33616806 TTT
1 TTT
33616809 AGGTTTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.15, C:0.03, G:0.17, T:0.65
Consensus pattern (18 bp):
TTTTGTATTTTAATGGTA
Found at i:33620991 original size:72 final size:72
Alignment explanation
Indices: 33620901--33621382 Score: 955
Period size: 72 Copynumber: 6.7 Consensus size: 72
33620891 AAATTCTCTG
*
33620901 AAGACGTGAATATGACAATACAACACATATATTTTCTCATTACCACACTTCTCACAACAATCAAA
1 AAGACGTGAATAGGACAATACAACACATATATTTTCTCATTACCACACTTCTCACAACAATCAAA
33620966 TAACGTA
66 TAACGTA
33620973 AAGACGTGAATAGGACAATACAACACATATATTTTCTCATTACCACACTTCTCACAACAATCAAA
1 AAGACGTGAATAGGACAATACAACACATATATTTTCTCATTACCACACTTCTCACAACAATCAAA
33621038 TAACGTA
66 TAACGTA
33621045 AAGACGTGAATAGGACAATACAACACATATATTTTCTCATTACCACACTTCTCACAACAATCAAA
1 AAGACGTGAATAGGACAATACAACACATATATTTTCTCATTACCACACTTCTCACAACAATCAAA
33621110 TAACGTA
66 TAACGTA
33621117 AAGACGTGAATAGGACAATACAACACATATATTTTCTCATTACCACACTTCTCACAACAATCAAA
1 AAGACGTGAATAGGACAATACAACACATATATTTTCTCATTACCACACTTCTCACAACAATCAAA
33621182 TAACGTA
66 TAACGTA
33621189 AAGACGTGAATAGGACAATACAACACATATATTTTCTCATTACCACACTTCTCACAACAATCAAA
1 AAGACGTGAATAGGACAATACAACACATATATTTTCTCATTACCACACTTCTCACAACAATCAAA
33621254 TAACGTA
66 TAACGTA
33621261 AAGACGTGAATAGGACAATACAACACATATATTTTCTCATTACCACACTTCTCACAACAATCAAA
1 AAGACGTGAATAGGACAATACAACACATATATTTTCTCATTACCACACTTCTCACAACAATCAAA
33621326 TAACGTA
66 TAACGTA
33621333 AAGACGTGAATAGGACAATACAACACATATATTTTCTCATTACCACACTT
1 AAGACGTGAATAGGACAATACAACACATATATTTTCTCATTACCACACTT
33621383 TTTATTTTTA
Statistics
Matches: 409, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 409 1.00
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.26
Consensus pattern (72 bp):
AAGACGTGAATAGGACAATACAACACATATATTTTCTCATTACCACACTTCTCACAACAATCAAA
TAACGTA
Found at i:33621451 original size:10 final size:9
Alignment explanation
Indices: 33621436--33621474 Score: 51
Period size: 10 Copynumber: 4.1 Consensus size: 9
33621426 TATCAAACTT
33621436 ATAATATAA
1 ATAATATAA
33621445 CATAATATAA
1 -ATAATATAA
*
33621455 ATATTATAA
1 ATAATATAA
33621464 ATAATTATAA
1 ATAA-TATAA
33621474 A
1 A
33621475 ACAAATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 11 0.42
10 15 0.58
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (9 bp):
ATAATATAA
Found at i:33622501 original size:61 final size:58
Alignment explanation
Indices: 33622391--33622506 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 58
33622381 ATCACTTTAG
* *
33622391 TATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATC
*
33622449 TATTAAATTAATAGAATATTTATCTATAAGATAAATATTAAATT-AATATTAATATTAA
1 TATTAAATTAATAGAATACTTATC---AAGATAAATATTAAATTAAAT-TTAATATTAA
33622507 GATAATTAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
58 22 0.43
60 3 0.06
61 26 0.51
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.42
Consensus pattern (58 bp):
TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATC
Found at i:33622515 original size:61 final size:58
Alignment explanation
Indices: 33622392--33622522 Score: 158
Period size: 61 Copynumber: 2.2 Consensus size: 58
33622382 TCACTTTAGT
* * *
33622392 ATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATCT
1 ATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATCA
*
33622450 ATTAAATTAATAGAATATTTATCTATAAGATAAATATTAAATT-AATATTAATATTAAGAT-A
1 ATTAAATTAATAGAATACTTATC---AAGATAAATATTAAATTAAAT-TTAATATTAA-ATCA
*
33622511 ATTAATTTAATA
1 ATTAAATTAATA
33622523 TTACATTAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
58 21 0.33
60 3 0.05
61 37 0.59
62 2 0.03
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (58 bp):
ATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATCA
Found at i:33622531 original size:37 final size:35
Alignment explanation
Indices: 33622482--33622574 Score: 98
Period size: 37 Copynumber: 2.5 Consensus size: 35
33622472 CTATAAGATA
* *
33622482 AATATTAAATTAATATTAATATTAAGATAATTAATTT
1 AATATT-AATTAATATTAATATCAAGATAA-GAATTT
*
33622519 AATATTACATTAATAAAATAATATCAAGATAAGAATTT
1 AATATTA-ATTAAT--ATTAATATCAAGATAAGAATTT
33622557 AAT-TTAATTTAATATTAA
1 AATATTAA-TTAATATTAA
33622575 ATTTATTAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
35 4 0.08
36 2 0.04
37 20 0.42
38 8 0.17
39 14 0.29
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (35 bp):
AATATTAATTAATATTAATATCAAGATAAGAATTT
Found at i:33624149 original size:109 final size:109
Alignment explanation
Indices: 33623958--33624229 Score: 535
Period size: 109 Copynumber: 2.5 Consensus size: 109
33623948 TGCTTGTCAC
33623958 AAAAGACATAATAGTGAAATGTGAAATTAACTTTATTTATTTATTCATCGTTCATTTACATAGAA
1 AAAAGACATAATAGTGAAATGTGAAATTAACTTTATTTATTTATTCATCGTTCATTTACATAGAA
33624023 AAACATTCAAATAGTGAAATGTGAAACATGAAAGACAAAAACAA
66 AAACATTCAAATAGTGAAATGTGAAACATGAAAGACAAAAACAA
33624067 AAAAGACATAATAGTGAAATGTGAAATTAACTTTATTTATTTATTCATCGTTCATTTACATAGAA
1 AAAAGACATAATAGTGAAATGTGAAATTAACTTTATTTATTTATTCATCGTTCATTTACATAGAA
33624132 AAACATTCAAATAGTGAAATGTGAAACATGAAAGACAAAAACAA
66 AAACATTCAAATAGTGAAATGTGAAACATGAAAGACAAAAACAA
*
33624176 AAAAGACATAATAGTGAAATGTGAAATTAACTTTATTTATTTATTCATCTTTCA
1 AAAAGACATAATAGTGAAATGTGAAATTAACTTTATTTATTTATTCATCGTTCA
33624230 AATATACATA
Statistics
Matches: 162, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 162 1.00
ACGTcount: A:0.47, C:0.10, G:0.11, T:0.32
Consensus pattern (109 bp):
AAAAGACATAATAGTGAAATGTGAAATTAACTTTATTTATTTATTCATCGTTCATTTACATAGAA
AAACATTCAAATAGTGAAATGTGAAACATGAAAGACAAAAACAA
Found at i:33642635 original size:30 final size:30
Alignment explanation
Indices: 33642571--33642659 Score: 116
Period size: 25 Copynumber: 3.1 Consensus size: 30
33642561 TCCATATTTA
33642571 TGGAAAGTCAAAGATATGGGTATC-AA-A-
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
33642598 T--AAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
* *
33642626 TGGAAAGTCAAAGATATGGATATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
33642657 TGG
1 TGG
33642660 CATAAGAAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
25 21 0.39
26 2 0.04
27 2 0.04
28 1 0.02
30 20 0.37
31 8 0.15
ACGTcount: A:0.43, C:0.07, G:0.25, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:33654624 original size:6 final size:6
Alignment explanation
Indices: 33654613--33654647 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
33654603 ATTATGGAAA
*
33654613 AAAAAG AAAAAG AAAAAG AAAGAAG AAAAGG AAAA
1 AAAAAG AAAAAG AAAAAG AAA-AAG AAAAAG AAAA
33654648 TGAGAGGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:33656188 original size:50 final size:50
Alignment explanation
Indices: 33656125--33656416 Score: 233
Period size: 50 Copynumber: 5.8 Consensus size: 50
33656115 TTTGGCATTA
* ** *
33656125 TAGTGGAATAGATTGAAGCCACAACGATGAATCTTGTTTCCCTGGCGGTG
1 TAGTGGAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCTGGCGGTG
* * * * ** **
33656175 TATTGGAACAGATTGAAGCCACGACGGCGGATCTGGTTTCCCTAACATTG
1 TAGTGGAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCTGGCGGTG
* * ** * *
33656225 CAATAAAAAAGATTGAAGCCACAACGGTGAATCTTGTTTCCCTGGCGGTG
1 TAGTGGAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCTGGCGGTG
* * * * * * **
33656275 TAGTGGGATAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACATTG
1 TAGTGGAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCTGGCGGTG
* * ** * **
33656325 AAATTAAAAAGATTGAAGCCACAATGGCGGATCTTACTTCCCTGGCGGTG
1 TAGTGGAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCTGGCGGTG
* * * * * *
33656375 TAGTGGAACAGATTGAAGCTACGATGGCGAATCTTGTCTCCC
1 TAGTGGAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCC
33656417 CGACATTGCA
Statistics
Matches: 178, Mismatches: 64, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
50 178 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (50 bp):
TAGTGGAAAAGATTGAAGCCACAACGGCGGATCTTGTTTCCCTGGCGGTG
Found at i:33656307 original size:100 final size:100
Alignment explanation
Indices: 33656134--33656426 Score: 424
Period size: 100 Copynumber: 2.9 Consensus size: 100
33656124 ATAGTGGAAT
* * *
33656134 AGATTGAAGCCACAACGATGAATCTTGTTTCCCTGGCGGTGTATTGGAACAGATTGAAGCCACGA
1 AGATTGAAGCCACAACGGTGAATCTTGTTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
*
33656199 CGGCGGATCTGGTTTCCCTAACATTGCAATAAAAA
66 CGGCGGATCTGGTTTCCCTGACATTGCAATAAAAA
* *
33656234 AGATTGAAGCCACAACGGTGAATCTTGTTTCCCTGGCGGTGTAGTGGGATAGATTGAAGCTACGA
1 AGATTGAAGCCACAACGGTGAATCTTGTTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
* *
33656299 CGGCGGATCTGGTTTCCCTGACATTGAAATTAAAA
66 CGGCGGATCTGGTTTCCCTGACATTGCAATAAAAA
* * * **
33656334 AGATTGAAGCCACAATGGCGGATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCACAACGGTGAATCTTGTTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
* * * * *
33656399 TGGCGAATCTTGTCTCCCCGACATTGCA
66 CGGCGGATCTGGTTTCCCTGACATTGCA
33656427 GTTAAGTAGA
Statistics
Matches: 172, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 172 1.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (100 bp):
AGATTGAAGCCACAACGGTGAATCTTGTTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
CGGCGGATCTGGTTTCCCTGACATTGCAATAAAAA
Found at i:33658575 original size:22 final size:22
Alignment explanation
Indices: 33658545--33658601 Score: 53
Period size: 22 Copynumber: 2.5 Consensus size: 22
33658535 CTCAATTTTA
*
33658545 TTTTAATTTCATT-TTAATACTT
1 TTTTAATTT-ATTATCAATACTT
* *
33658567 TTTTCATTTATTATCAATTCTTT
1 TTTTAATTTATTATCAATAC-TT
33658590 TTTTATATTTAT
1 TTTTA-ATTTAT
33658602 GTCTATATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 3 0.11
22 13 0.46
23 6 0.21
24 6 0.21
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTTAATTTATTATCAATACTT
Found at i:33658865 original size:36 final size:35
Alignment explanation
Indices: 33658821--33658889 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 35
33658811 TTACATAAAC
33658821 TTTTATA-TTTAATAACTTTAATATATATACATATT
1 TTTTATATTTTAATAA-TTTAATATATATACATATT
* * *
33658856 TTTTCATATTTTCATAATTTTATGTATATACATA
1 TTTT-ATATTTTAATAATTTAATATATATACATA
33658890 CATATATATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
35 4 0.14
36 18 0.62
37 7 0.24
ACGTcount: A:0.36, C:0.07, G:0.01, T:0.55
Consensus pattern (35 bp):
TTTTATATTTTAATAATTTAATATATATACATATT
Found at i:33658992 original size:4 final size:4
Alignment explanation
Indices: 33658983--33659008 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
33658973 GTTGTTGTCC
33658983 ATTT ATTT ATTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT AT
33659009 ATGTCCATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:33659142 original size:20 final size:20
Alignment explanation
Indices: 33659106--33659143 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
33659096 TTGCTCATTT
*
33659106 TATTTTTATTCATATTATCA
1 TATTTTTATTCACATTATCA
33659126 TATTTATTATTC-CATTAT
1 TATTT-TTATTCACATTAT
33659144 GCACATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (20 bp):
TATTTTTATTCACATTATCA
Found at i:33659451 original size:112 final size:108
Alignment explanation
Indices: 33659177--33659502 Score: 501
Period size: 108 Copynumber: 3.0 Consensus size: 108
33659167 AAGGAAAATT
* *
33659177 TTTCTAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTT
* *
33659242 TGATATTTCTCGTTTGACCAAATAGCCAAATATCCTTAAAAAA
66 CGATTTTTCTCGTTTGACCAAATAGCCAAATATCCTTAAAAAA
* *
33659285 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTTGAGAAAATGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTT
*
33659350 CGATTTTTCTCGTTCGACCAAATAGCCAAATATCCCTTTGAAAAAAA
66 CGATTTTTCTCGTTTGACCAAATAGCCAAATAT-CC-TT--AAAAAA
* * *
33659397 TTTCAAAATAAGACAATATTTTGCGTTTGGAAATTTGAGGAAACGTGCCCTAATGCGCTGGGTTT
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTT
33659462 CGATTTTT-TCGTTTGACCAAATAGCCAAATATTCTCTTAAA
66 CGATTTTTCTCGTTTGACCAAATAGCCAAATA-TC-CTTAAA
33659503 TCTTAATCCA
Statistics
Matches: 199, Mismatches: 13, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
108 91 0.46
109 5 0.03
110 2 0.01
111 25 0.13
112 76 0.38
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (108 bp):
TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTT
CGATTTTTCTCGTTTGACCAAATAGCCAAATATCCTTAAAAAA
Found at i:33664613 original size:89 final size:89
Alignment explanation
Indices: 33664458--33664901 Score: 448
Period size: 89 Copynumber: 5.0 Consensus size: 89
33664448 AACAGATTAG
* * * *
33664458 TGAAGATAATAGATCTTGCCTTCCTGTACTGACGGTGAAGCAA-ATCGAAGACACCAACATTGCC
1 TGAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAAG-AAGATCGAAGACACCAGCCTTGCC
* *
33664522 TTCCTTTACTGACAACGGAGCAGAC
65 TTCCTGTACTGACAGCGGAGCAGAC
* * * * * *
33664547 TGAAGATAGCAGATCTTGTCTTCTTGTACTAACGGCGAAGAAGATCGAAGACACTAGCCTTACCT
1 TGAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAAGAAGATCGAAGACACCAGCCTTGCCT
* * *
33664612 TCCTGTACTAACAGCAGAGAAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * *
33664636 TGAAGATAGCAGATCTTACCTTTCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
1 TGAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAAGAAGATCGAAGACACCAGCCTTGCCT
33664701 TCCTGTACTGACAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * ** *
33664725 TGAAGAAAATAGATTTTTTCTTCCTGTACTGACGGCGAAGCAGATCGAAGACA-CAGACCTTGCC
1 TGAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAAGAAGATCGAAGACACCAG-CCTTGCC
*
33664789 TTCTTGTACTGACAGCGGAGCAGA-
65 TTCCTGTACTGACAGCGGAGCAGAC
* * * * * * * * * * *
33664813 TCGAAGACACCAG-CCTTACCTTCCTGTATTGACAGCGGAGCAGAGT-GAAGATAACAGATCTTG
1 T-GAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAAGAAGA-TCGAAGACACCAG-CCTTG
* *
33664876 CCTTCCTGTACTAACAGCGAAGCAGA
63 CCTTCCTGTACTGACAGCGGAGCAGA
33664902 TCAAAAACAC
Statistics
Matches: 299, Mismatches: 51, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
88 36 0.12
89 263 0.88
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (89 bp):
TGAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAAGAAGATCGAAGACACCAGCCTTGCCT
TCCTGTACTGACAGCGGAGCAGAC
Found at i:33664762 original size:178 final size:177
Alignment explanation
Indices: 33664458--33664931 Score: 519
Period size: 178 Copynumber: 2.7 Consensus size: 177
33664448 AACAGATTAG
* * * * *
33664458 TGAAGATAATAGATCTTGCCTTCCTGTACTGACGGTGAAGCAAATCGAAGACACCAACATTGCCT
1 TGAAGATAACAGATCTTACCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
* * * * *
33664523 TCCTTTACTGACAACGGAGCAGACTGAAGATAGCAGATCTTGTCTTCTTGTACTAACGGCGAAGA
66 TCCTGTACTGACAGCGGAGCAGACTGAAGAAAACAGATCTTGTCTTCCTGTACTAACGGCGAAGA
33664588 AGATCGAAGACACTAG-CCTTACCTTCCTGTACTAACAGCAGAGAAGA
131 AGATCGAAGACAC-AGACCTTACCTTCCTGTACTAACAGCAGAGAAGA
* *
33664635 CTGAAGATAGCAGATCTTACCTTTCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCC
1 -TGAAGATAACAGATCTTACCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCC
* * * *
33664700 TTCCTGTACTGACAGCGGAGCAGACTGAAGAAAATAGATTTTTTCTTCCTGTACTGACGGCGAAG
65 TTCCTGTACTGACAGCGGAGCAGACTGAAGAAAACAGATCTTGTCTTCCTGTACTAACGGCGAAG
* * * * * *
33664765 CAGATCGAAGACACAGACCTTGCCTTCTTGTACTGACAGCGGAGCAGA
130 AAGATCGAAGACACAGACCTTACCTTCCTGTACTAACAGCAGAGAAGA
* * * * * * * * * *
33664813 TCGAAGACACCAG-CCTTACCTTCCTGTATTGACAGCGGAGCAGAGT-GAAGATAACAGATCTTG
1 T-GAAGATAACAGATCTTACCTTCCTGTACTGACGGTGAAGCAGA-TCGAAGACACCAG-CCTTG
* * * *
33664876 CCTTCCTGTACTAACAGCGAAGCAGA-TCAA-AAACACCAG-CCTTGTCTTCCTGTACT
63 CCTTCCTGTACTGACAGCGGAGCAGACTGAAGAAA-A-CAGATCTTGTCTTCCTGTACT
33664932 GAAAGCAGAG
Statistics
Matches: 250, Mismatches: 40, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
176 3 0.01
177 55 0.22
178 192 0.77
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.24
Consensus pattern (177 bp):
TGAAGATAACAGATCTTACCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
TCCTGTACTGACAGCGGAGCAGACTGAAGAAAACAGATCTTGTCTTCCTGTACTAACGGCGAAGA
AGATCGAAGACACAGACCTTACCTTCCTGTACTAACAGCAGAGAAGA
Found at i:33664902 original size:89 final size:89
Alignment explanation
Indices: 33664744--33665597 Score: 1172
Period size: 89 Copynumber: 9.6 Consensus size: 89
33664734 TAGATTTTTT
* * * * * * *
33664744 CTTCCTGTACTGACGGCGAAGCAGA-TCGAAGA-CACAGACCTTGCCTTCTTGTACTGACAGCGG
1 CTTCCTGTACTGACAGCGGAGCAGACT-GAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGA
*
33664807 AGCAGATCGAAGACACCAGCCTTAC
65 AGCAGATCGAAGACACCAGCCTTGC
* * * *
33664832 CTTCCTGTATTGACAGCGGAGCAGAGTGAAGATAACAGATCTTGCCTTCCTGTACTAACAGCGAA
1 CTTCCTGTACTGACAGCGGAGCAGACTGAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAA
* * *
33664897 GCAGATCAAAAACACCAGCCTTGT
66 GCAGATCGAAGACACCAGCCTTGC
* * * *
33664921 CTTCCTGTACTGAAAGCAGAGCAAACTGAAGATAACAGATCTTGCCTTCCTATACTGACGGCGAA
1 CTTCCTGTACTGACAGCGGAGCAGACTGAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAA
*
33664986 GTAGATCGAAGACACCAGCCTTGC
66 GCAGATCGAAGACACCAGCCTTGC
* * * * *
33665010 CTTCCTGTACTGACAGCGAAGCAGACTAAAGATATCAGATCTTGCCTTCCTGTATTGACGGGGAA
1 CTTCCTGTACTGACAGCGGAGCAGACTGAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAA
* *
33665075 GCAAATCGAAGACACCAGCATTGC
66 GCAGATCGAAGACACCAGCCTTGC
* * * * *
33665099 CTTCCTGTATTGACAGCGGAGCAGGCTGAAGATAACAGATCTTGCCTTCGTATACTGACGGTGAA
1 CTTCCTGTACTGACAGCGGAGCAGACTGAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAA
* * *
33665164 GCAGATTGAAGACACCAACTTTGC
66 GCAGATCGAAGACACCAGCCTTGC
* * * *
33665188 CTTCCTGTACTGACAGTGGAGCAGACTGAAAATAATAGATCTTGCCTTCCTGTACTGACAGCGAA
1 CTTCCTGTACTGACAGCGGAGCAGACTGAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAA
33665253 GCAGATCGAAGACACCAGCCTTGC
66 GCAGATCGAAGACACCAGCCTTGC
* * * *
33665277 CTTCCTGTACTGACAGCGGAGCAAACTGAAGATAACAAATCTTGCATTCCTGTACTAACGGCGAA
1 CTTCCTGTACTGACAGCGGAGCAGACTGAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAA
* *
33665342 GCAGATCGAAGACACCAACCATGC
66 GCAGATCGAAGACACCAGCCTTGC
* * *
33665366 CTTCCTGTACTGATAGCGGAGCAGACTAAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAA
1 CTTCCTGTACTGACAGCGGAGCAGACTGAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAA
*
33665431 GCAGATCGAGGACACCAGCCTTGC
66 GCAGATCGAAGACACCAGCCTTGC
* * * * * *
33665455 CTTCCTGTACTGACAGTGGAACAGACTAAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCAAA
1 CTTCCTGTACTGACAGCGGAGCAGACTGAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAA
33665520 GCAGATCGAAGACACCAGCCTTGC
66 GCAGATCGAAGACACCAGCCTTGC
* *
33665544 CTTCCTGTACTGACAGCGGAGCAGACTAAAGATAGCAGATCTTGCCTTCCTGTA
1 CTTCCTGTACTGACAGCGGAGCAGACTGAAGATAACAGATCTTGCCTTCCTGTA
33665598 NNNNNNNNNN
Statistics
Matches: 675, Mismatches: 89, Indels: 3
0.88 0.12 0.00
Matches are distributed among these distances:
88 27 0.04
89 648 0.96
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.22
Consensus pattern (89 bp):
CTTCCTGTACTGACAGCGGAGCAGACTGAAGATAACAGATCTTGCCTTCCTGTACTGACGGCGAA
GCAGATCGAAGACACCAGCCTTGC
Found at i:33668805 original size:113 final size:109
Alignment explanation
Indices: 33668516--33668848 Score: 463
Period size: 108 Copynumber: 3.0 Consensus size: 109
33668506 TTCAAAGAGG
* *
33668516 AAAATTTTTCTAAATAAGGCAATATTTTGCGTTTGGAAATTCGAAAAAACGTGCCCTAATGTGCT
1 AAAATTTTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCT
*
33668581 GGGTTTCGATATTTCTCGTTCGACCAAATAGCCAAATATCCTTA
66 GGGTTTCGATTTTTCTCGTTCGACCAAATAGCCAAATATCCTTA
* * * *
33668625 AAAA-ATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAATGTGTCCTAATGTGCT
1 AAAATTTTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCT
* *
33668689 GGGTTTCGATTTTTCTCGTTCAACCAAATAGTCAAATATCCCTTTTA
66 GGGTTTCGATTTTTCTCGTTCGACCAAATAGCCAAATAT-CC--TTA
* * * *
33668736 AAAATTTTTTCAAAATAAGACAATATTTTGTGTTTGGAAATTTGAGAAAACGTGCCCTAATGCGC
1 AAAA-TTTTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGC
* *
33668801 TGGGTTTCGATTTTT-TCATTTGACCAAATAGCCAAATATTCTCTTA
65 TGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCAAATA-TC-CTTA
33668847 AA
1 AA
33668849 TCTTAATTCA
Statistics
Matches: 196, Mismatches: 21, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
108 90 0.46
109 6 0.03
111 12 0.06
112 20 0.10
113 68 0.35
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (109 bp):
AAAATTTTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCT
GGGTTTCGATTTTTCTCGTTCGACCAAATAGCCAAATATCCTTA
Found at i:33670514 original size:11 final size:11
Alignment explanation
Indices: 33670487--33670522 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
33670477 GTTAACTAGT
33670487 TTAATTAAAAA
1 TTAATTAAAAA
*
33670498 -TCATTAAAAA
1 TTAATTAAAAA
33670508 TTAATTAAAAA
1 TTAATTAAAAA
33670519 TTAA
1 TTAA
33670523 AAAATTAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (11 bp):
TTAATTAAAAA
Found at i:33670788 original size:21 final size:20
Alignment explanation
Indices: 33670762--33670807 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
33670752 TACAAACACA
*
33670762 AAAAAAGATATTAATTTTTTT
1 AAAAAAGAAATTAA-TTTTTT
* *
33670783 AAAAAATAAATTCATTTTTT
1 AAAAAAGAAATTAATTTTTT
33670803 AAAAA
1 AAAAA
33670808 TCATTTTCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (20 bp):
AAAAAAGAAATTAATTTTTT
Found at i:33673962 original size:9 final size:9
Alignment explanation
Indices: 33673948--33673994 Score: 58
Period size: 9 Copynumber: 5.0 Consensus size: 9
33673938 AAGATTTTAT
*
33673948 AAAAATACA
1 AAAAATATA
33673957 AAAAATATA
1 AAAAATATA
*
33673966 AAAATTTATTA
1 AAAA-ATA-TA
33673977 AAAAATATA
1 AAAAATATA
33673986 AAAAATATA
1 AAAAATATA
33673995 TATTTTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 23 0.70
10 4 0.12
11 6 0.18
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (9 bp):
AAAAATATA
Found at i:33676414 original size:23 final size:23
Alignment explanation
Indices: 33676387--33676430 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
33676377 TATTTAAAAA
*
33676387 ATTAAATTATAATTTTATCATAT
1 ATTAAATTATAATTTCATCATAT
*
33676410 ATTAATTTATAATTTCATCAT
1 ATTAAATTATAATTTCATCAT
33676431 TTATAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTAAATTATAATTTCATCATAT
Found at i:33677706 original size:19 final size:20
Alignment explanation
Indices: 33677682--33677720 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
33677672 ATTGAAAGAA
*
33677682 ATTATA-AATAGAAATATAC
1 ATTATAGAAAAGAAATATAC
33677701 ATTATATGAAAAGAAATATA
1 ATTATA-GAAAAGAAATATA
33677721 TTTAACCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
21 11 0.65
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.31
Consensus pattern (20 bp):
ATTATAGAAAAGAAATATAC
Found at i:33679361 original size:10 final size:10
Alignment explanation
Indices: 33679346--33679376 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
33679336 GAGCGTTCTT
33679346 TCTGTTGTTC
1 TCTGTTGTTC
33679356 TCTGTTGTTC
1 TCTGTTGTTC
*
33679366 TTTGTTGTTC
1 TCTGTTGTTC
33679376 T
1 T
33679377 TCTTTTGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.16, G:0.19, T:0.65
Consensus pattern (10 bp):
TCTGTTGTTC
Found at i:33686192 original size:22 final size:22
Alignment explanation
Indices: 33686166--33686213 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
33686156 TAAATGCATG
33686166 TAATTATTC-TTA-AATAAAATTA
1 TAATT-TTCATTATAATAAAA-TA
*
33686188 TAATTTTCATTATAATATAATA
1 TAATTTTCATTATAATAAAATA
33686210 TAAT
1 TAAT
33686214 CGTATGTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 3 0.13
22 14 0.61
23 6 0.26
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (22 bp):
TAATTTTCATTATAATAAAATA
Found at i:33690124 original size:10 final size:10
Alignment explanation
Indices: 33690109--33690146 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
33690099 ATATATTTAG
33690109 AATTTTTAAT
1 AATTTTTAAT
33690119 AATTTTTAAT
1 AATTTTTAAT
*
33690129 AATTATTT-AC
1 AATT-TTTAAT
33690139 AATTTTTA
1 AATTTTTA
33690147 TAAGGGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 3 0.12
10 19 0.76
11 3 0.12
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (10 bp):
AATTTTTAAT
Found at i:33690380 original size:15 final size:14
Alignment explanation
Indices: 33690345--33690380 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 14
33690335 TTTTAGGGTT
33690345 AGAGAAAAAGAAGA
1 AGAGAAAAAGAAGA
33690359 AGAAGAAAAAGAAGAA
1 AG-AGAAAAAGAAG-A
33690375 AGAGAA
1 AGAGAA
33690381 GAGGAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 2 0.10
15 15 0.75
16 3 0.15
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (14 bp):
AGAGAAAAAGAAGA
Found at i:33691477 original size:21 final size:21
Alignment explanation
Indices: 33691447--33691498 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
33691437 GGCAGCCTAT
33691447 TGAGTTGGGGTA-CTCTCTTGC
1 TGAGTTGGGGTAGCT-TCTTGC
* *
33691468 TGATTTGGGGTAGCTTGTTGC
1 TGAGTTGGGGTAGCTTCTTGC
33691489 TGAGTTGGGG
1 TGAGTTGGGG
33691499 CAACCACTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.10, C:0.12, G:0.40, T:0.38
Consensus pattern (21 bp):
TGAGTTGGGGTAGCTTCTTGC
Found at i:33692212 original size:28 final size:28
Alignment explanation
Indices: 33692172--33692225 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
33692162 CACACACCTA
33692172 AAAAAACAATCACTACATGCATATTATT
1 AAAAAACAATCACTACATGCATATTATT
* * *
33692200 AAAAAATACTCACTGCATGCATATTA
1 AAAAAACAATCACTACATGCATATTA
33692226 AAAAATAGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.48, C:0.19, G:0.06, T:0.28
Consensus pattern (28 bp):
AAAAAACAATCACTACATGCATATTATT
Found at i:33692394 original size:28 final size:28
Alignment explanation
Indices: 33692354--33692407 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
33692344 CACACACCTA
33692354 AAAAAACAATCACTACATGCATATTATT
1 AAAAAACAATCACTACATGCATATTATT
* * *
33692382 AAAAAATACTCACTGCATGCATATTA
1 AAAAAACAATCACTACATGCATATTA
33692408 AAAAATAGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.48, C:0.19, G:0.06, T:0.28
Consensus pattern (28 bp):
AAAAAACAATCACTACATGCATATTATT
Found at i:33692415 original size:182 final size:182
Alignment explanation
Indices: 33692108--33692497 Score: 762
Period size: 182 Copynumber: 2.1 Consensus size: 182
33692098 CCATGCTTGG
*
33692108 TTAAAAAACAATCACTAAAACAACATTATGAGTAGCCCTACCAACAATGATACACACACACCTAA
1 TTAAAAAACACTCACTAAAACAACATTATGAGTAGCCCTACCAACAATGATACACACACACCTAA
33692173 AAAAACAATCACTACATGCATATTATTAAAAAATACTCACTGCATGCATATTAAAAAATAGTCAA
66 AAAAACAATCACTACATGCATATTATTAAAAAATACTCACTGCATGCATATTAAAAAATAGTCAA
33692238 CAAAATGTATATTAAAAAACAGTCATACACACCAACAATCACTGCACGCGTA
131 CAAAATGTATATTAAAAAACAGTCATACACACCAACAATCACTGCACGCGTA
33692290 TTAAAAAACACTCACTAAAACAACATTATGAGTAGCCCTACCAACAATGATACACACACACCTAA
1 TTAAAAAACACTCACTAAAACAACATTATGAGTAGCCCTACCAACAATGATACACACACACCTAA
33692355 AAAAACAATCACTACATGCATATTATTAAAAAATACTCACTGCATGCATATTAAAAAATAGTCAA
66 AAAAACAATCACTACATGCATATTATTAAAAAATACTCACTGCATGCATATTAAAAAATAGTCAA
*
33692420 CAAAATGTATATTAAAAAACAGTCATACACACCAACAATCACTGCATGCGTA
131 CAAAATGTATATTAAAAAACAGTCATACACACCAACAATCACTGCACGCGTA
33692472 TTAAAAAACACTCACTAAAACAACAT
1 TTAAAAAACACTCACTAAAACAACAT
33692498 GTGACCAGCA
Statistics
Matches: 206, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
182 206 1.00
ACGTcount: A:0.49, C:0.23, G:0.07, T:0.22
Consensus pattern (182 bp):
TTAAAAAACACTCACTAAAACAACATTATGAGTAGCCCTACCAACAATGATACACACACACCTAA
AAAAACAATCACTACATGCATATTATTAAAAAATACTCACTGCATGCATATTAAAAAATAGTCAA
CAAAATGTATATTAAAAAACAGTCATACACACCAACAATCACTGCACGCGTA
Found at i:33694189 original size:15 final size:15
Alignment explanation
Indices: 33694171--33694200 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
33694161 CTTTCAAATG
33694171 CATCACTACCAGACA
1 CATCACTACCAGACA
33694186 CATCACTACCAGACA
1 CATCACTACCAGACA
33694201 TTTCTTCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.40, G:0.07, T:0.13
Consensus pattern (15 bp):
CATCACTACCAGACA
Found at i:33694691 original size:18 final size:18
Alignment explanation
Indices: 33694640--33694679 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
33694630 CCCTAAATAG
*
33694640 AAATCCAAATCCAAATCA
1 AAATCTAAATCCAAATCA
*
33694658 AAATCTAAATCTAAATCA
1 AAATCTAAATCCAAATCA
33694676 AAAT
1 AAAT
33694680 TGAAATCGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.23
Consensus pattern (18 bp):
AAATCTAAATCCAAATCA
Found at i:33702004 original size:88 final size:88
Alignment explanation
Indices: 33701905--33702273 Score: 594
Period size: 88 Copynumber: 4.2 Consensus size: 88
33701895 ATAAGACTGA
* * *
33701905 TGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGACAAGATCTGTTATTTTTAACCTGCTCTGCT
1 TGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT
*
33701970 GCAACCCAGGGAGGCAAGGCTAG
66 ACAACCCAGGGAGGCAAGGCTAG
*
33701993 TGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT
1 TGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT
* * * *
33702058 ACAATCTAGGGAGGCAAGGTTGG
66 ACAACCCAGGGAGGCAAGGCTAG
* *
33702081 TGTCTTCAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCT
1 TGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT
*
33702146 ACAACCCAGGGAGGCAAGGCTGG
66 ACAACCCAGGGAGGCAAGGCTAG
* *
33702169 TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCAATTTTTAACCTGCTCCGCT
1 TGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT
**
33702234 GTAACCCAGGGAGGCAAGGCTAG
66 ACAACCCAGGGAGGCAAGGCTAG
33702257 TGTCTTCGATCTGCTTC
1 TGTCTTCGATCTGCTTC
33702274 TTTGATCCAC
Statistics
Matches: 259, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 259 1.00
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (88 bp):
TGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT
ACAACCCAGGGAGGCAAGGCTAG
Found at i:33702031 original size:44 final size:44
Alignment explanation
Indices: 33701976--33702207 Score: 130
Period size: 44 Copynumber: 5.3 Consensus size: 44
33701966 TGCTGCAACC
* *
33701976 CAGGGAGGCAAGGCTAGTGTCTTTGATCTGCTTCGCTGTCGGTG
1 CAGGAAGGCAAGGCTAGTGTCTTTAATCTGCTTCGCTGTCGGTG
* * * * * * **
33702020 CAGGAAGGCAAGATCT-GCTATTTTTAACCTGCTCCGCT-ACAAT-
1 CAGGAAGGCAAG-GCTAG-TGTCTTTAATCTGCTTCGCTGTCGGTG
* * * *
33702063 CTAGGGAGGCAAGGTTGGTGTCTTCAATCTGCTTCGCTGTCGGTG
1 C-AGGAAGGCAAGGCTAGTGTCTTTAATCTGCTTCGCTGTCGGTG
* * * * * * * ****
33702108 CAGGAAGGCAAGATCTACTATTTTTAACCTGCTCCGCT-ACAACC
1 CAGGAAGGCAAG-GCTAGTGTCTTTAATCTGCTTCGCTGTCGGTG
* * ** *
33702152 CAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTG
1 CAGGAAGGCAAGGCTAGTGTCTTTAATCTGCTTCGCTGTCGGTG
33702196 CAGGAAGGCAAG
1 CAGGAAGGCAAG
33702208 ATCTGCAATT
Statistics
Matches: 127, Mismatches: 53, Indels: 16
0.65 0.27 0.08
Matches are distributed among these distances:
43 32 0.25
44 61 0.48
45 34 0.27
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (44 bp):
CAGGAAGGCAAGGCTAGTGTCTTTAATCTGCTTCGCTGTCGGTG
Found at i:33702349 original size:44 final size:44
Alignment explanation
Indices: 33702264--33702888 Score: 543
Period size: 44 Copynumber: 14.2 Consensus size: 44
33702254 TAGTGTCTTC
* * * *
33702264 GATCTGCT-TCTTTGATCCACTTC-CTACTAATATAGGAAGACAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * * *
33702307 GATTTGCTATCTTCAATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* * * * *
33702351 GATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAT
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAA
* * *
33702396 GATCTGC-ATCTTCGATCCATTTC-CTACCAATATAGGAAGACAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * *
33702439 GATCTGCTATCTTCGATCTACTTCGCGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* * * * *
33702483 GATTTTCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAA
*
33702528 GA--T-CTAGTCTTCGATCTACTTC-CTACCAATATAGGAAGACAT
1 GATCTGCTA-TCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * *
33702570 GATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* * * * *
33702614 GATCTACTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAA
* * * *
33702659 GATCTGC-ATCTT-GATCCACTTCGCTACCAATATAAGAAGACAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * **
33702702 GATCTGTTATCTTCGATCTACTTCACACCAATACATGTGGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* * * *
33702746 GATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAA
* ** *
33702791 GATCTGC-ATCTTCGATCCACTTCGTTACCAATATAGGAAGACAG
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAA
* * * * * *
33702835 GATCTGTTCTCTTTGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
*
33702879 GATTTGCTAT
1 GATCTGCTAT
33702889 TTTTTAGCCT
Statistics
Matches: 462, Mismatches: 101, Indels: 37
0.77 0.17 0.06
Matches are distributed among these distances:
41 1 0.00
42 22 0.05
43 74 0.16
44 259 0.56
45 106 0.23
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (44 bp):
GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
Found at i:33702501 original size:132 final size:132
Alignment explanation
Indices: 33702264--33702886 Score: 973
Period size: 132 Copynumber: 4.7 Consensus size: 132
33702254 TAGTGTCTTC
* * * * *
33702264 GATCTGCTTCTTTGATCCACTTCCTACTAATATAGGAAGACAGGATTTGCTATCTTCAATCTACT
1 GATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
33702329 TCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGAC
66 TCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGAC
*
33702394 AT
131 AA
*
33702396 GATCTGCATCTTCGATCCATTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
1 GATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * *
33702461 TCGCGCCAATACATGAAGACAAGATTTTCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGAC
66 TCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGAC
33702526 AA
131 AA
* * *
33702528 GATCT--AGTCTTCGATCTACTTCCTACCAATATAGGAAGACATGATCTGCTATCTTTGATCTAC
1 GATCTGCA-TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTAC
*
33702591 TTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGA
65 TTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGA
33702656 CAA
130 CAA
* *
33702659 GATCTGCATCTT-GATCCACTTCGCTACCAATATAAGAAGACAGGATCTGTTATCTTCGATCTAC
1 GATCTGCATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTAC
* **
33702723 TTCACACCAATACATGTGGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGA
65 TTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGA
33702788 CAA
130 CAA
* * * *
33702791 GATCTGCATCTTCGATCCACTTCGTTACCAATATAGGAAGACAGGATCTGTTCTCTTTGATCTAC
1 GATCTGCATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTAC
*
33702856 TTCACGCCAATACATGAAGACAAGATTTGCT
65 TTCACGCCAATACATGAAGACAAGATCTGCT
33702887 ATTTTTTAGC
Statistics
Matches: 450, Mismatches: 36, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
130 1 0.00
131 130 0.29
132 243 0.54
133 76 0.17
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (132 bp):
GATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
TCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGAC
AA
Found at i:33702618 original size:263 final size:263
Alignment explanation
Indices: 33702272--33702886 Score: 973
Period size: 263 Copynumber: 2.3 Consensus size: 263
33702262 TCGATCTGCT
* * * **
33702272 TCTTTGATCCACTTCCTACTAATATAGGAAGACAGGATTTGCTATCTTCAATCTACTTCACGCCA
1 TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTTGATCTACTTCACGCCA
*
33702337 ATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACATGATCTG
66 ATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTG
* * * *
33702402 CATCTTCGATCCATTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCGCG
131 CATCTT-GATCCACTTCGCTACCAATATAAGAAGACAGGATCTGCTATCTTCGATCTACTTCACA
* *
33702466 CCAATACATGAAGACAAGATTTTCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
195 CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
33702531 CT-A
260 CTGA
* *
33702534 GTCTTCGATCTACTTCCTACCAATATAGGAAGACATGATCTGCTATCTTTGATCTACTTCACGCC
1 -TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTTGATCTACTTCACGCC
*
33702599 AATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCT
65 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCT
*
33702664 GCATCTTGATCCACTTCGCTACCAATATAAGAAGACAGGATCTGTTATCTTCGATCTACTTCACA
130 GCATCTTGATCCACTTCGCTACCAATATAAGAAGACAGGATCTGCTATCTTCGATCTACTTCACA
** *
33702729 CCAATACATGTGGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
195 CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
33702794 CTGCA
260 CTG-A
* * *
33702799 TCTTCGATCCACTTCGTTACCAATATAGGAAGACAGGATCTGTTCTCTTTGATCTACTTCACGCC
1 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTTGATCTACTTCACGCC
*
33702864 AATACATGAAGACAAGATTTGCT
65 AATACATGAAGACAAGATCTGCT
33702887 ATTTTTTAGC
Statistics
Matches: 322, Mismatches: 26, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
262 9 0.03
263 232 0.72
264 14 0.04
265 67 0.21
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (263 bp):
TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTTGATCTACTTCACGCCA
ATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTG
CATCTTGATCCACTTCGCTACCAATATAAGAAGACAGGATCTGCTATCTTCGATCTACTTCACAC
CAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATC
TGA
Found at i:33711375 original size:15 final size:15
Alignment explanation
Indices: 33711355--33711409 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
33711345 ACTCTCCTCA
*
33711355 TTCTTTTCTTTCTTT
1 TTCTTTTCTCTCTTT
*
33711370 TTCTTTTCACTCTTT
1 TTCTTTTCTCTCTTT
*
33711385 TTGTTTT-TCTCTTT
1 TTCTTTTCTCTCTTT
33711399 TTCTTTT-TCTC
1 TTCTTTTCTCTC
33711410 GATCAATAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
14 16 0.46
15 19 0.54
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (15 bp):
TTCTTTTCTCTCTTT
Found at i:33713470 original size:17 final size:17
Alignment explanation
Indices: 33713436--33713470 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
33713426 ACTTTTTTTT
*
33713436 TTTTTTTTAATTCCGAA
1 TTTTTTTTAATACCGAA
*
33713453 TTTTTTTTAATACTGAA
1 TTTTTTTTAATACCGAA
33713470 T
1 T
33713471 ACACAAAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.09, G:0.06, T:0.60
Consensus pattern (17 bp):
TTTTTTTTAATACCGAA
Found at i:33726850 original size:60 final size:60
Alignment explanation
Indices: 33726721--33726897 Score: 157
Period size: 61 Copynumber: 2.9 Consensus size: 60
33726711 TTTTTGAAAA
* * *
33726721 TTTTAGAATTAGAATTAAATATCGACAAATTTTGTAAATGTTCA-GGCTTAAA-TTTATTGAAT
1 TTTTAGAATTAGAA-TAAA-AT-GAAAAATTTTGTAAATATTGAGGGC-TAAATTTTATTGAAT
*
33726783 TTATTAGAATTAGAACT-AAATGAAAAATTTTGTAAATATTGAGGGCTAAATTTTGTTGAAT
1 TT-TTAGAATTAGAA-TAAAATGAAAAATTTTGTAAATATTGAGGGCTAAATTTTATTGAAT
* * * *
33726844 TTTTAG-ATTGAGGATCAAATTGATACAA-TGTGTAAATATTGGAGGGCTAAATTT
1 TTTTAGAATT-AGAAT-AAAATGA-AAAATTTTGTAAATATT-GAGGGCTAAATTT
33726898 ATTATTAGGT
Statistics
Matches: 98, Mismatches: 9, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
59 4 0.04
60 29 0.30
61 32 0.33
62 20 0.20
63 13 0.13
ACGTcount: A:0.38, C:0.05, G:0.17, T:0.40
Consensus pattern (60 bp):
TTTTAGAATTAGAATAAAATGAAAAATTTTGTAAATATTGAGGGCTAAATTTTATTGAAT
Found at i:33727145 original size:18 final size:19
Alignment explanation
Indices: 33727124--33727161 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
33727114 TGTAATATGA
33727124 AAATA-AAATAAAATATTT
1 AAATATAAATAAAATATTT
* *
33727142 AAATATAATTCAAATATTT
1 AAATATAAATAAAATATTT
33727161 A
1 A
33727162 TTTATTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (19 bp):
AAATATAAATAAAATATTT
Found at i:33727386 original size:20 final size:19
Alignment explanation
Indices: 33727352--33727390 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
33727342 TCAACTTTAA
33727352 AATCAAGTTAAAATGATTTT
1 AATCAAGTTAAAATG-TTTT
33727372 AATCAAG-TAAGAATGTTTT
1 AATCAAGTTAA-AATGTTTT
33727391 CAACTAGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.44, C:0.05, G:0.13, T:0.38
Consensus pattern (19 bp):
AATCAAGTTAAAATGTTTT
Found at i:33736784 original size:13 final size:13
Alignment explanation
Indices: 33736768--33736797 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
33736758 TTGTATTGCA
*
33736768 TGTTTGATTTTCT
1 TGTTTGATTTCCT
33736781 TGTTTGATTTCCT
1 TGTTTGATTTCCT
33736794 TGTT
1 TGTT
33736798 AACCCCTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.10, G:0.17, T:0.67
Consensus pattern (13 bp):
TGTTTGATTTCCT
Found at i:33739964 original size:16 final size:16
Alignment explanation
Indices: 33739943--33739982 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
33739933 TTGAGTTACT
33739943 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
33739959 ATTACACCTCTATTCC
1 ATTACAGCTCTATTCC
33739975 ATTACAGC
1 ATTACAGC
33739983 GAACCAAACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.28, C:0.33, G:0.05, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:33760523 original size:7 final size:7
Alignment explanation
Indices: 33760511--33760539 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
33760501 AAAGTGAATA
33760511 ATATGTG
1 ATATGTG
33760518 ATATGTG
1 ATATGTG
33760525 ATATGTG
1 ATATGTG
33760532 ATATGTG
1 ATATGTG
33760539 A
1 A
33760540 GCATGTTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.31, C:0.00, G:0.28, T:0.41
Consensus pattern (7 bp):
ATATGTG
Found at i:33760730 original size:21 final size:21
Alignment explanation
Indices: 33760697--33760736 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
33760687 ATGTTGCAGT
* *
33760697 TTATCTGCGATTATGTGGTCG
1 TTATCGGCAATTATGTGGTCG
33760718 TTATCGGCAATTATGTGGT
1 TTATCGGCAATTATGTGGT
33760737 GGCTTGTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.12, G:0.28, T:0.42
Consensus pattern (21 bp):
TTATCGGCAATTATGTGGTCG
Found at i:33760760 original size:47 final size:48
Alignment explanation
Indices: 33760707--33760797 Score: 157
Period size: 48 Copynumber: 1.9 Consensus size: 48
33760697 TTATCTGCGA
*
33760707 TTATGTGGTCGTT-ATCGGCAATTATGTGGTGGCTTGTCCACAATGTG
1 TTATGTGGTCATTAATCGGCAATTATGTGGTGGCTTGTCCACAATGTG
*
33760754 TTATGTGGTCATTAATCGGCATTTATGTGGTGGCTTGTCCACAA
1 TTATGTGGTCATTAATCGGCAATTATGTGGTGGCTTGTCCACAA
33760798 ATAATGTGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
47 12 0.29
48 29 0.71
ACGTcount: A:0.19, C:0.15, G:0.27, T:0.38
Consensus pattern (48 bp):
TTATGTGGTCATTAATCGGCAATTATGTGGTGGCTTGTCCACAATGTG
Found at i:33761499 original size:80 final size:81
Alignment explanation
Indices: 33761379--33761542 Score: 303
Period size: 80 Copynumber: 2.0 Consensus size: 81
33761369 TGTTTTACAA
33761379 ATAATAAGTAAGTTTTCTTTCAACGTAATGTTTTACAACATGGTATAAAAAA-GGAATATTAGAA
1 ATAATAAGTAAGTTTTCTTTCAACGTAATGTTTTACAACATGGTATAAAAAAGGGAATATTAGAA
*
33761443 TGCGTTTTCAAAGACT
66 CGCGTTTTCAAAGACT
*
33761459 ATAATAAGTAAGTTTTCTTTCGACGTAATGTTTTACAACATGGTATAAAAAAGGGAATATTAGAA
1 ATAATAAGTAAGTTTTCTTTCAACGTAATGTTTTACAACATGGTATAAAAAAGGGAATATTAGAA
33761524 CGCGTTTTCAAAGACT
66 CGCGTTTTCAAAGACT
33761540 ATA
1 ATA
33761543 TCCATTTATT
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
80 51 0.63
81 30 0.37
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (81 bp):
ATAATAAGTAAGTTTTCTTTCAACGTAATGTTTTACAACATGGTATAAAAAAGGGAATATTAGAA
CGCGTTTTCAAAGACT
Found at i:33769135 original size:14 final size:14
Alignment explanation
Indices: 33769116--33769155 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
33769106 TTGATTGGCA
33769116 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
33769130 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
33769144 GGAAAATGTTTT
1 GTAAAATGTTTT
33769156 ACTTTTCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:33770567 original size:27 final size:27
Alignment explanation
Indices: 33770537--33770606 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
33770527 ATTAATTAAT
* *
33770537 TCAATATCCAGCAATGTTAAAACATA-A
1 TCAATATCCAACAAT-TCAAAACATATA
*
33770564 TCAATATCTAACAAATTCAAAACATATA
1 TCAATATCCAAC-AATTCAAAACATATA
*
33770592 TCAAAATCCAACAAT
1 TCAATATCCAACAAT
33770607 CTAAAATTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.51, C:0.20, G:0.03, T:0.26
Consensus pattern (27 bp):
TCAATATCCAACAATTCAAAACATATA
Found at i:33770612 original size:27 final size:26
Alignment explanation
Indices: 33770553--33770605 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 26
33770543 TCCAGCAATG
* *
33770553 TTAAAACATAATCAATATCTAACAAA
1 TTAAAACATAATCAAAATCCAACAAA
33770579 TTCAAAACATATATCAAAATCCAACAA
1 TT-AAAACATA-ATCAAAATCCAACAA
33770606 TCTAAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 2 0.09
27 8 0.35
28 13 0.57
ACGTcount: A:0.57, C:0.19, G:0.00, T:0.25
Consensus pattern (26 bp):
TTAAAACATAATCAAAATCCAACAAA
Found at i:33772968 original size:8 final size:8
Alignment explanation
Indices: 33772955--33772987 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
33772945 CCATTACCAG
33772955 GAACAACA
1 GAACAACA
33772963 GAACAACA
1 GAACAACA
33772971 GAACAACA
1 GAACAACA
33772979 GGAACAACA
1 -GAACAACA
33772988 CTAATCTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.61, C:0.24, G:0.15, T:0.00
Consensus pattern (8 bp):
GAACAACA
Found at i:33773807 original size:24 final size:24
Alignment explanation
Indices: 33773780--33773876 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
33773770 TGCAATCGAT
33773780 AGGGTGAAGAGAGGAGCTGTGGAA
1 AGGGTGAAGAGAGGAGCTGTGGAA
33773804 AGGGTGAAGAGAGGAGCTGTGGAA
1 AGGGTGAAGAGAGGAGCTGTGGAA
* * **
33773828 AGGGTGCAGAGAGGAACAATGGAA
1 AGGGTGAAGAGAGGAGCTGTGGAA
* *
33773852 AAGGTGAAGAAAGGAGCTGTGGAA
1 AGGGTGAAGAGAGGAGCTGTGGAA
33773876 A
1 A
33773877 ATGTCTTACC
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.38, C:0.05, G:0.45, T:0.11
Consensus pattern (24 bp):
AGGGTGAAGAGAGGAGCTGTGGAA
Found at i:33779589 original size:15 final size:15
Alignment explanation
Indices: 33779562--33779615 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
33779552 CCTACATACA
33779562 GGTTCACA-A-GTAG
1 GGTTCACACATGTAG
33779575 GGTTCACACATGTAG
1 GGTTCACACATGTAG
** **
33779590 GGTTCGTACAAATAG
1 GGTTCACACATGTAG
33779605 GGTTCACACAT
1 GGTTCACACAT
33779616 ATAAGGTTCG
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
13 8 0.25
14 1 0.03
15 23 0.72
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (15 bp):
GGTTCACACATGTAG
Found at i:33779606 original size:30 final size:30
Alignment explanation
Indices: 33779567--33779625 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
33779557 ATACAGGTTC
* * *
33779567 ACAAGTAGGGTTCACACATGTAGGGTTCGT
1 ACAAATAGGGTTCACACATATAAGGTTCGT
33779597 ACAAATAGGGTTCACACATATAAGGTTCG
1 ACAAATAGGGTTCACACATATAAGGTTCG
33779626 CATATTATAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (30 bp):
ACAAATAGGGTTCACACATATAAGGTTCGT
Found at i:33779623 original size:15 final size:15
Alignment explanation
Indices: 33779572--33779624 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
33779562 GGTTCACAAG
*
33779572 TAGGGTTCACACATG
1 TAGGGTTCACACATA
** *
33779587 TAGGGTTCGTACAAA
1 TAGGGTTCACACATA
33779602 TAGGGTTCACACATA
1 TAGGGTTCACACATA
*
33779617 TAAGGTTC
1 TAGGGTTC
33779625 GCATATTATA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (15 bp):
TAGGGTTCACACATA
Found at i:33779932 original size:111 final size:112
Alignment explanation
Indices: 33779737--33779961 Score: 371
Period size: 111 Copynumber: 2.0 Consensus size: 112
33779727 AAGGATTGCA
33779737 TGTACATTCCTCCTAAGGCTCACATGAATATACATATAGGGTTCACATATAAAACATGTAAGGTT
1 TGTACATTCCTCCTAAGGCTCACATGAATATACATATAGGGTTCACATATAAAACATGTAAGGTT
*
33779802 TGCATAGCAGAAATAGATAGGATTTGCATACTACAATATATAGGGTT
66 TGCATAGCAGAAATAGATAGGATTCGCATACTACAATATATAGGGTT
* * *
33779849 TGTACATTCCTCTTAGGGTTCACATGAATATACATATA-GGTTCACATATAAAACATGTAAGGTT
1 TGTACATTCCTCCTAAGGCTCACATGAATATACATATAGGGTTCACATATAAAACATGTAAGGTT
* ** *
33779913 TGCTTAGTGGAAATAGATAGGATTCGCATACTACAATATGTAGGGTT
66 TGCATAGCAGAAATAGATAGGATTCGCATACTACAATATATAGGGTT
33779960 TG
1 TG
33779962 CATATTCACA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
111 70 0.67
112 35 0.33
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (112 bp):
TGTACATTCCTCCTAAGGCTCACATGAATATACATATAGGGTTCACATATAAAACATGTAAGGTT
TGCATAGCAGAAATAGATAGGATTCGCATACTACAATATATAGGGTT
Found at i:33780219 original size:18 final size:18
Alignment explanation
Indices: 33780196--33780230 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
33780186 GTTTATATAA
33780196 GGGTTCACACATATGGGT
1 GGGTTCACACATATGGGT
*
33780214 GGGTTCACATATATGGG
1 GGGTTCACACATATGGG
33780231 CTCACATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.14, G:0.34, T:0.29
Consensus pattern (18 bp):
GGGTTCACACATATGGGT
Found at i:33780266 original size:30 final size:29
Alignment explanation
Indices: 33780214--33780331 Score: 98
Period size: 28 Copynumber: 4.1 Consensus size: 29
33780204 ACATATGGGT
* * * * *
33780214 GGGTTCACATATATGGGCTCACATACAAG
1 GGGTTCGCTTATAGGGGTTCACATACTAG
* *
33780243 GGGTTCGCTTATAGGGAGTTCACATTCTGG
1 GGGTTCGCTTATAGGG-GTTCACATACTAG
* *
33780273 GGGTTCGCTTATTGGGGTTCGCATA-TAG
1 GGGTTCGCTTATAGGGGTTCACATACTAG
* *
33780301 GGGTTTG-TCTATAGGGGTTCGCATA-TAG
1 GGGTTCGCT-TATAGGGGTTCACATACTAG
33780329 GGG
1 GGG
33780332 GTTTGCATAC
Statistics
Matches: 74, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
27 1 0.01
28 29 0.39
29 20 0.27
30 24 0.32
ACGTcount: A:0.19, C:0.15, G:0.34, T:0.31
Consensus pattern (29 bp):
GGGTTCGCTTATAGGGGTTCACATACTAG
Found at i:33780291 original size:14 final size:14
Alignment explanation
Indices: 33780241--33780331 Score: 85
Period size: 14 Copynumber: 6.4 Consensus size: 14
33780231 CTCACATACA
33780241 AGGGGTTCGCTTAT
1 AGGGGTTCGCTTAT
* *
33780255 AGGGAGTTCACATTCT
1 AGGG-GTTCGC-TTAT
*
33780271 GGGGGTTCGCTTAT
1 AGGGGTTCGCTTAT
* *
33780285 TGGGGTTCGCATAT
1 AGGGGTTCGCTTAT
*
33780299 AGGGGTTTG-TCTAT
1 AGGGGTTCGCT-TAT
*
33780313 AGGGGTTCGCATAT
1 AGGGGTTCGCTTAT
33780327 AGGGG
1 AGGGG
33780332 GTTTGCATAC
Statistics
Matches: 61, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
14 45 0.74
15 10 0.16
16 6 0.10
ACGTcount: A:0.16, C:0.13, G:0.37, T:0.33
Consensus pattern (14 bp):
AGGGGTTCGCTTAT
Found at i:33780411 original size:19 final size:19
Alignment explanation
Indices: 33780376--33780414 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
33780366 ACAGGGTTCA
* *
33780376 CCTATACATTAAGGGATCG
1 CCTATACACTAAAGGATCG
33780395 CCTATACACTAAAGGATCG
1 CCTATACACTAAAGGATCG
33780414 C
1 C
33780415 ACATATATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (19 bp):
CCTATACACTAAAGGATCG
Found at i:33786933 original size:5 final size:5
Alignment explanation
Indices: 33786923--33786970 Score: 87
Period size: 5 Copynumber: 9.6 Consensus size: 5
33786913 GTTGATGTAA
*
33786923 AATAC AATAC AATAC AATAC AATGC AATAC AATAC AATAC AATAC AAT
1 AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AATAC AAT
33786971 TGATTCATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.58, C:0.19, G:0.02, T:0.21
Consensus pattern (5 bp):
AATAC
Found at i:33792209 original size:24 final size:24
Alignment explanation
Indices: 33792177--33792245 Score: 70
Period size: 22 Copynumber: 3.0 Consensus size: 24
33792167 GGGTAATTGT
* *
33792177 GCTGCCATGGCTACTTCTTCCAGC
1 GCTGACATGACTACTTCTTCCAGC
*
33792201 GCTGACATGACTGCTTCTTCCA--
1 GCTGACATGACTACTTCTTCCAGC
* **
33792223 GCTGACATAACTGTTTCTTCCAG
1 GCTGACATGACTACTTCTTCCAG
33792246 ATGAGTAGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
22 20 0.51
24 19 0.49
ACGTcount: A:0.17, C:0.32, G:0.19, T:0.32
Consensus pattern (24 bp):
GCTGACATGACTACTTCTTCCAGC
Found at i:33792229 original size:22 final size:22
Alignment explanation
Indices: 33792190--33792245 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
33792180 GCCATGGCTA
*
33792190 CTTCTTCCAGCGCTGACATGACTG
1 CTTCTTCCA--GCTGACATAACTG
33792214 CTTCTTCCAGCTGACATAACTG
1 CTTCTTCCAGCTGACATAACTG
*
33792236 TTTCTTCCAG
1 CTTCTTCCAG
33792246 ATGAGTAGCC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 21 0.70
24 9 0.30
ACGTcount: A:0.18, C:0.32, G:0.16, T:0.34
Consensus pattern (22 bp):
CTTCTTCCAGCTGACATAACTG
Found at i:33800772 original size:21 final size:21
Alignment explanation
Indices: 33800730--33800768 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
33800720 TTTGTTGTTA
**
33800730 TTTGATTTTAATTTCTAATAT
1 TTTGATTTTAATCCCTAATAT
33800751 TTTGATTTTAA-CCCTAAT
1 TTTGATTTTAATCCCTAAT
33800769 TATTCTAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.28, C:0.10, G:0.05, T:0.56
Consensus pattern (21 bp):
TTTGATTTTAATCCCTAATAT
Found at i:33801975 original size:18 final size:19
Alignment explanation
Indices: 33801949--33801991 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
33801939 CATGCTTTGC
*
33801949 TTTTCTTTTTCTTT-TCTT
1 TTTTGTTTTTCTTTGTCTT
* *
33801967 TTTTGTTTTTGTTTGTTTT
1 TTTTGTTTTTCTTTGTCTT
33801986 TTTTGT
1 TTTTGT
33801992 GGTTTCCCTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.00, C:0.07, G:0.09, T:0.84
Consensus pattern (19 bp):
TTTTGTTTTTCTTTGTCTT
Found at i:33812836 original size:45 final size:45
Alignment explanation
Indices: 33812772--33812865 Score: 143
Period size: 45 Copynumber: 2.1 Consensus size: 45
33812762 AACAGATACT
* * *
33812772 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
* *
33812817 CGGTGGAATCAACACATAGCAGCCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
33812862 CGGT
1 CGGT
33812866 TCACATAGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:33812927 original size:51 final size:51
Alignment explanation
Indices: 33812867--33813003 Score: 195
Period size: 51 Copynumber: 2.7 Consensus size: 51
33812857 ATGTTCGGTT
* * *
33812867 CACATAGTAGCCTGTACATACTACTACACATGTGATC-ATTACCATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGATCGA-AACCATCCGATA
* * *
33812918 CACATAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGATCGAAACCATCCGATA
*
33812969 CGCATAGTAGCCTGCACATAGTACTACACATGTGA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGA
33813004 CCATCACTTT
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
51 76 0.99
52 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACATGTGATCGAAACCATCCGATA
Found at i:33815078 original size:31 final size:31
Alignment explanation
Indices: 33815043--33815152 Score: 105
Period size: 31 Copynumber: 3.4 Consensus size: 31
33815033 ATCACTTTAA
33815043 TATTAAATTAATAAAATACTATTAAGATAAG
1 TATTAAATTAATAAAATACTATTAAGATAAG
** * * *
33815074 TATTAAATTAAATTTAATATTAAGATAATCACTTTAA-
1 TATTAAATT-AATAAAATACT-A-TTAA-GA---TAAG
33815111 TATTAAATTAATAAAATACTATTAAGATAAG
1 TATTAAATTAATAAAATACTATTAAGATAAG
33815142 TATTAAATTAA
1 TATTAAATTAA
33815153 ATTTAATATT
Statistics
Matches: 61, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
30 3 0.05
31 20 0.33
32 8 0.13
33 2 0.03
34 6 0.10
35 2 0.03
36 8 0.13
37 9 0.15
38 3 0.05
ACGTcount: A:0.53, C:0.04, G:0.05, T:0.39
Consensus pattern (31 bp):
TATTAAATTAATAAAATACTATTAAGATAAG
Found at i:33815111 original size:68 final size:68
Alignment explanation
Indices: 33815031--33815164 Score: 268
Period size: 68 Copynumber: 2.0 Consensus size: 68
33815021 TGATTAAACT
33815031 TAATCACTTTAATATTAAATTAATAAAATACTATTAAGATAAGTATTAAATTAAATTTAATATTA
1 TAATCACTTTAATATTAAATTAATAAAATACTATTAAGATAAGTATTAAATTAAATTTAATATTA
33815096 AGA
66 AGA
33815099 TAATCACTTTAATATTAAATTAATAAAATACTATTAAGATAAGTATTAAATTAAATTTAATATTA
1 TAATCACTTTAATATTAAATTAATAAAATACTATTAAGATAAGTATTAAATTAAATTTAATATTA
33815164 A
66 A
33815165 ACTATTAAAA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.40
Consensus pattern (68 bp):
TAATCACTTTAATATTAAATTAATAAAATACTATTAAGATAAGTATTAAATTAAATTTAATATTA
AGA
Found at i:33815122 original size:20 final size:18
Alignment explanation
Indices: 33815074--33815181 Score: 64
Period size: 20 Copynumber: 5.8 Consensus size: 18
33815064 TTAAGATAAG
33815074 TATTAAATTAA-ATTTAA
1 TATTAAATTAATATTTAA
33815091 TATTAAGA-TAATCACTTTAA
1 TATTAA-ATTAAT-A-TTTAA
** *
33815111 TATTAAATTAATAAAATAC
1 TATTAAATTAAT-ATTTAA
33815130 TATTAAGA-TAAGTA-TTAA
1 TATTAA-ATTAA-TATTTAA
*
33815148 -ATTAAATTTAATATTAAA
1 TATTAAA-TTAATATTTAA
*
33815166 CTATTAAAATAATATT
1 -TATTAAATTAATATT
33815182 ATTTTTGAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 22
0.70 0.08 0.22
Matches are distributed among these distances:
16 1 0.01
17 16 0.23
18 9 0.13
19 21 0.30
20 24 0.34
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.42
Consensus pattern (18 bp):
TATTAAATTAATATTTAA
Found at i:33815169 original size:37 final size:36
Alignment explanation
Indices: 33815039--33815182 Score: 112
Period size: 37 Copynumber: 4.1 Consensus size: 36
33815029 CTTAATCACT
*
33815039 TTAATATTAAATTAATA-AAATACTATTAAGATAAGTA
1 TTAATATTAAATTAATATTAA-ACTATTAAGATAA-TA
33815076 TTAA-ATT--A--AAT-TT-AA-TATTAAGATAATCA
1 TTAATATTAAATTAATATTAAACTATTAAGATAAT-A
*
33815105 CTTTAATATTAAATTAATA-AAATACTATTAAGATAAGTA
1 --TTAATATTAAATTAATATTAA-ACTATTAAGATAA-TA
*
33815144 TTAA-ATTAAATTTAATATTAAACTATTAAAATAATA
1 TTAATATTAAA-TTAATATTAAACTATTAAGATAATA
33815180 TTA
1 TTA
33815183 TTTTTGAAAT
Statistics
Matches: 87, Mismatches: 4, Indels: 33
0.70 0.03 0.27
Matches are distributed among these distances:
28 1 0.01
29 12 0.14
30 1 0.01
31 5 0.06
32 6 0.07
34 2 0.02
36 17 0.20
37 27 0.31
38 3 0.03
39 12 0.14
40 1 0.01
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (36 bp):
TTAATATTAAATTAATATTAAACTATTAAGATAATA
Found at i:33819847 original size:21 final size:22
Alignment explanation
Indices: 33819823--33819865 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
33819813 AATTAAATTT
*
33819823 AAGTTAGAAACTAT-TATAAAA
1 AAGTTACAAACTATATATAAAA
33819844 AAGTTACAAACTATATATAAAA
1 AAGTTACAAACTATATATAAAA
33819866 TTTTATTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.28
Consensus pattern (22 bp):
AAGTTACAAACTATATATAAAA
Found at i:33833553 original size:58 final size:58
Alignment explanation
Indices: 33833490--33833623 Score: 180
Period size: 58 Copynumber: 2.3 Consensus size: 58
33833480 ATTCATATTG
* * * *
33833490 TAATAATTATATTAAGAATGTTATTAAATTATATATTA-TTTTATTAAATTGTATTTAA
1 TAATAATTATATTAA-AATATGATTAAATTATATATTATTTTTATTAAAATATATTTAA
* *
33833548 TAATAATTATGTTAAAATATGATTAAATTATTTATTATTTTTATTAAAATATATTTAA
1 TAATAATTATATTAAAATATGATTAAATTATATATTATTTTTATTAAAATATATTTAA
* *
33833606 AAATAATTTTATTAAAAT
1 TAATAATTATATTAAAAT
33833624 TTAATAACAA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
57 19 0.29
58 47 0.71
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.51
Consensus pattern (58 bp):
TAATAATTATATTAAAATATGATTAAATTATATATTATTTTTATTAAAATATATTTAA
Found at i:33833809 original size:16 final size:16
Alignment explanation
Indices: 33833790--33833841 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
33833780 TGAATTACTA
33833790 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
*
33833806 ATTACAACTCTATTCA
1 ATTACAACTCTATTCC
*
33833822 ATTACAGCTCTATTCC
1 ATTACAACTCTATTCC
33833838 ATTA
1 ATTA
33833842 TAGTGAACCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.33, C:0.27, G:0.02, T:0.38
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:33835670 original size:46 final size:47
Alignment explanation
Indices: 33835582--33835675 Score: 136
Period size: 46 Copynumber: 2.0 Consensus size: 47
33835572 TAACCATATT
* *
33835582 TTTGTTCTGGCAGCTTGACTGCATTTATAGTGGCTCGACCACACATA
1 TTTGTTCTGGCAACTTGACTGCATATATAGTGGCTCGACCACACATA
* * *
33835629 TTTGTTCTGGCAACTTGGCTGCA-ATATAGTGGCTTGACCACATATA
1 TTTGTTCTGGCAACTTGACTGCATATATAGTGGCTCGACCACACATA
33835675 T
1 T
33835676 CCGATTTGGC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
46 21 0.50
47 21 0.50
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.35
Consensus pattern (47 bp):
TTTGTTCTGGCAACTTGACTGCATATATAGTGGCTCGACCACACATA
Found at i:33835686 original size:46 final size:47
Alignment explanation
Indices: 33835585--33835687 Score: 120
Period size: 46 Copynumber: 2.2 Consensus size: 47
33835575 CCATATTTTT
* * **
33835585 GTTCTGGCAGCTTGACTGCATTTATAGTGGCTCGACCACACATATTT
1 GTTCTGGCAACTTGACTGCATATATAGTGGCTCGACCACACATATCC
* * *
33835632 GTTCTGGCAACTTGGCTGCA-ATATAGTGGCTTGACCACATATATCC
1 GTTCTGGCAACTTGACTGCATATATAGTGGCTCGACCACACATATCC
33835678 GATT-TGGCAA
1 G-TTCTGGCAA
33835688 TTCTAACTGC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
46 28 0.58
47 20 0.42
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (47 bp):
GTTCTGGCAACTTGACTGCATATATAGTGGCTCGACCACACATATCC
Found at i:33835834 original size:22 final size:23
Alignment explanation
Indices: 33835794--33835836 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
33835784 TGGGTAGGAA
33835794 GTTTTCTGAAAAATCTGCATTTC
1 GTTTTCTGAAAAATCTGCATTTC
33835817 GTTTTCT-AAAATAT-TGCATT
1 GTTTTCTGAAAA-ATCTGCATT
33835837 CGCATAACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.47
Consensus pattern (23 bp):
GTTTTCTGAAAAATCTGCATTTC
Found at i:33836504 original size:20 final size:20
Alignment explanation
Indices: 33836479--33836521 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
33836469 TGTTACAATT
*
33836479 TTTCAATCGATTTAAAAATG
1 TTTCAATCGAGTTAAAAATG
*
33836499 TTTCAATTGAGTTAAAAATG
1 TTTCAATCGAGTTAAAAATG
33836519 TTT
1 TTT
33836522 AAACTGTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.07, G:0.12, T:0.44
Consensus pattern (20 bp):
TTTCAATCGAGTTAAAAATG
Found at i:33848781 original size:18 final size:20
Alignment explanation
Indices: 33848741--33848783 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
33848731 ACATGTATAA
*
33848741 GTATGTGTATTAATTAAACT
1 GTATGTGTATTAATTAAAAT
33848761 GTATGTGTATT-A-TAAAAT
1 GTATGTGTATTAATTAAAAT
33848779 GTATG
1 GTATG
33848784 CATGTATATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.45
19 1 0.05
20 11 0.50
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (20 bp):
GTATGTGTATTAATTAAAAT
Found at i:33855435 original size:15 final size:16
Alignment explanation
Indices: 33855411--33855451 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
33855401 TCATATATAC
33855411 ATTCTTTAATAT-TTT
1 ATTCTTTAATATGTTT
*
33855426 ATTCTATAATATGTTT
1 ATTCTTTAATATGTTT
*
33855442 TTTCTTTAAT
1 ATTCTTTAAT
33855452 TTCACTCATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.63
Consensus pattern (16 bp):
ATTCTTTAATATGTTT
Found at i:33856422 original size:118 final size:118
Alignment explanation
Indices: 33856214--33856465 Score: 504
Period size: 118 Copynumber: 2.1 Consensus size: 118
33856204 GGAAATTGAA
33856214 CCCTAACTTACTGGGTTTTGATTTTTCATTCGACCCAAATAACCAAATATCCTTCTCAACATGCA
1 CCCTAACTTACTGGGTTTTGATTTTTCATTCGACCCAAATAACCAAATATCCTTCTCAACATGCA
33856279 TGGGTTTTTAAAGTCAAAAGATAAACTTAATTTTGAAGATTAAAAATGTTGCG
66 TGGGTTTTTAAAGTCAAAAGATAAACTTAATTTTGAAGATTAAAAATGTTGCG
33856332 CCCTAACTTACTGGGTTTTGATTTTTCATTCGACCCAAATAACCAAATATCCTTCTCAACATGCA
1 CCCTAACTTACTGGGTTTTGATTTTTCATTCGACCCAAATAACCAAATATCCTTCTCAACATGCA
33856397 TGGGTTTTTAAAGTCAAAAGATAAACTTAATTTTGAAGATTAAAAATGTTGCG
66 TGGGTTTTTAAAGTCAAAAGATAAACTTAATTTTGAAGATTAAAAATGTTGCG
33856450 CCCTAACTTACTGGGT
1 CCCTAACTTACTGGGT
33856466 GTGACATTTT
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
118 134 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (118 bp):
CCCTAACTTACTGGGTTTTGATTTTTCATTCGACCCAAATAACCAAATATCCTTCTCAACATGCA
TGGGTTTTTAAAGTCAAAAGATAAACTTAATTTTGAAGATTAAAAATGTTGCG
Found at i:33856597 original size:32 final size:32
Alignment explanation
Indices: 33856560--33856625 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
33856550 AATTTCGACA
33856560 TTAAGACATTAAACAATCAATTAAGTACCAAT
1 TTAAGACATTAAACAATCAATTAAGTACCAAT
*
33856592 TTAAGACATTAAACAATCAATTCAGTACCAAT
1 TTAAGACATTAAACAATCAATTAAGTACCAAT
33856624 TT
1 TT
33856626 TGGGCGTTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.47, C:0.17, G:0.06, T:0.30
Consensus pattern (32 bp):
TTAAGACATTAAACAATCAATTAAGTACCAAT
Found at i:33860689 original size:33 final size:33
Alignment explanation
Indices: 33860643--33860819 Score: 172
Period size: 33 Copynumber: 5.5 Consensus size: 33
33860633 CAAATGTATG
*
33860643 TATATACTCATCAAATACTTATAACCGAATGCA
1 TATATACTTATCAAATACTTATAACCGAATGCA
*
33860676 TATATACTTATCAACTACTTATAACCGAATGCA
1 TATATACTTATCAAATACTTATAACCGAATGCA
* * *
33860709 TATACAC--ATCAAAT-GTATACAACCGAATGCA
1 TATATACTTATCAAATACT-TATAACCGAATGCA
* *
33860740 TATATACCTATCAAATACTTA-AATCGAATGCA
1 TATATACTTATCAAATACTTATAACCGAATGCA
* *
33860772 TATACAC--ATCAAAGGTA--TATAACCAAATGCATA
1 TATATACTTATCAAA--TACTTATAACCGAATGC--A
33860805 TATATACTTATCAAA
1 TATATACTTATCAAA
33860820 GAAGATATAA
Statistics
Matches: 120, Mismatches: 13, Indels: 20
0.78 0.08 0.13
Matches are distributed among these distances:
30 9 0.08
31 33 0.28
32 18 0.15
33 53 0.44
34 1 0.01
35 6 0.05
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.29
Consensus pattern (33 bp):
TATATACTTATCAAATACTTATAACCGAATGCA
Found at i:33860719 original size:64 final size:62
Alignment explanation
Indices: 33860644--33860819 Score: 219
Period size: 64 Copynumber: 2.7 Consensus size: 62
33860634 AAATGTATGT
* *
33860644 ATATACTCATCAAATACTTATAACCGAATGCATATATACTTATCAACTACTTATAACCGAATGC
1 ATATACACATCAAATA-TTATAACCGAATGCATATATACTTATCAAATACTTA-AACCGAATGC
* * * *
33860708 ATATACACATCAAATGTATACAACCGAATGCATATATACCTATCAAATACTTAAATCGAATGC
1 ATATACACATCAAATAT-TATAACCGAATGCATATATACTTATCAAATACTTAAACCGAATGC
*
33860771 ATATACACATCAAAGGTA-TATAACCAAATGCATATATATACTTATCAAA
1 ATATACACATCAAA--TATTATAACCGAATGC--ATATATACTTATCAAA
33860820 GAAGATATAA
Statistics
Matches: 97, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
63 35 0.36
64 46 0.47
65 16 0.16
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.29
Consensus pattern (62 bp):
ATATACACATCAAATATTATAACCGAATGCATATATACTTATCAAATACTTAAACCGAATGC
Found at i:33860720 original size:31 final size:31
Alignment explanation
Indices: 33860644--33860806 Score: 163
Period size: 31 Copynumber: 5.2 Consensus size: 31
33860634 AAATGTATGT
*
33860644 ATATACTCATCAAATACTTATAACCGAATGC
1 ATATACACATCAAATACTTATAACCGAATGC
* *
33860675 ATATATACTTATCAACTACTTATAACCGAATGC
1 ATATACAC--ATCAAATACTTATAACCGAATGC
* *
33860708 ATATACACATCAAAT-GTATACAACCGAATGC
1 ATATACACATCAAATACT-TATAACCGAATGC
* *
33860739 ATATATACCTATCAAATACTTA-AATCGAATGC
1 ATATACA-C-ATCAAATACTTATAACCGAATGC
*
33860771 ATATACACATCAAAGGTA--TATAACCAAATGC
1 ATATACACATCAAA--TACTTATAACCGAATGC
33860802 ATATA
1 ATATA
33860807 TATACTTATC
Statistics
Matches: 110, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
30 9 0.08
31 44 0.40
32 18 0.16
33 38 0.35
34 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.28
Consensus pattern (31 bp):
ATATACACATCAAATACTTATAACCGAATGC
Found at i:33860801 original size:63 final size:64
Alignment explanation
Indices: 33860662--33860808 Score: 233
Period size: 63 Copynumber: 2.3 Consensus size: 64
33860652 ATCAAATACT
* * *
33860662 TATAACCGAATGCATATATACTTATCAACTACTTATAACCGAATGCATATACACATCAAATGTA
1 TATAACCGAATGCATATATACCTATCAAATACTTATAACCGAATGCATATACACATCAAAGGTA
* *
33860726 TACAACCGAATGCATATATACCTATCAAATACTTA-AATCGAATGCATATACACATCAAAGGTA
1 TATAACCGAATGCATATATACCTATCAAATACTTATAACCGAATGCATATACACATCAAAGGTA
*
33860789 TATAACCAAATGCATATATA
1 TATAACCGAATGCATATATA
33860809 TACTTATCAA
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
63 44 0.58
64 32 0.42
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (64 bp):
TATAACCGAATGCATATATACCTATCAAATACTTATAACCGAATGCATATACACATCAAAGGTA
Found at i:33861328 original size:80 final size:78
Alignment explanation
Indices: 33861167--33861420 Score: 295
Period size: 76 Copynumber: 3.3 Consensus size: 78
33861157 AAGTATTTAC
* * * * * * * *
33861167 AATTCATACTTTTAATTCAACTCAAGTACTTGTATATGTATATAC--ATCTATTCGAATCACACA
1 AATTCATACCTTTAATTCAATTCAAGAACTTATACATGTATATACATATATATTCGAACCTCACA
* *
33861230 CATACATATGTAA
66 TATACATATATAA
*
33861243 AATTCATACCTTTAATTCAATTCAAAAACTTATACATGTATATACATATATATATTCGAACCTCA
1 AATTCATACCTTTAATTCAATTCAAGAACTTATACATGTATATAC--ATATATATTCGAACCTCA
* *
33861308 CTTATACATATATAT
64 CATATACATATATAA
*
33861323 AATTCATAACTTTAATTCAATTCAAGAACTTATAC--G--TATACATATATATTCGAAAACCTCA
1 AATTCATACCTTTAATTCAATTCAAGAACTTATACATGTATATACATATATATTCG--AACCTCA
33861384 CATATACATATATAA
64 CATATACATATATAA
*
33861399 AATCCATACCTTTAATTCAATT
1 AATTCATACCTTTAATTCAATT
33861421 TATATATTTT
Statistics
Matches: 153, Mismatches: 19, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
74 11 0.07
76 84 0.55
78 1 0.01
80 57 0.37
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.37
Consensus pattern (78 bp):
AATTCATACCTTTAATTCAATTCAAGAACTTATACATGTATATACATATATATTCGAACCTCACA
TATACATATATAA
Found at i:33861412 original size:76 final size:77
Alignment explanation
Indices: 33861215--33861420 Score: 265
Period size: 80 Copynumber: 2.6 Consensus size: 77
33861205 TATATACATC
* * * *
33861215 TATTCGAATCACACACATACATATGTAAAATTCATACCTTTAATTCAATTCAAAAACTTATACAT
1 TATTCGAACCTCACATATACATATATAAAATTCATACCTTTAATTCAATTCAAAAACTTATACA-
33861280 GTATATACATATATA
65 G-ATATACA-ATATA
* * * *
33861295 TATTCGAACCTCACTTATACATATATATAATTCATAACTTTAATTCAATTCAAGAACTTATAC-G
1 TATTCGAACCTCACATATACATATATAAAATTCATACCTTTAATTCAATTCAAAAACTTATACAG
33861359 -TATAC-ATATA
66 ATATACAATATA
*
33861369 TATTCGAAAACCTCACATATACATATATAAAATCCATACCTTTAATTCAATT
1 TATTCG--AACCTCACATATACATATATAAAATTCATACCTTTAATTCAATT
33861421 TATATATTTT
Statistics
Matches: 112, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
74 11 0.10
76 45 0.40
78 1 0.01
80 55 0.49
ACGTcount: A:0.42, C:0.18, G:0.03, T:0.36
Consensus pattern (77 bp):
TATTCGAACCTCACATATACATATATAAAATTCATACCTTTAATTCAATTCAAAAACTTATACAG
ATATACAATATA
Found at i:33866983 original size:30 final size:30
Alignment explanation
Indices: 33866949--33867008 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
33866939 TTGTTGAATT
33866949 GTAGAAGTTTATTACAACTAGAAAAACAAA
1 GTAGAAGTTTATTACAACTAGAAAAACAAA
*
33866979 GTAGAAGTTTATTTCAACTAGAAAAACAAA
1 GTAGAAGTTTATTACAACTAGAAAAACAAA
33867009 CTCCTAGTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.52, C:0.10, G:0.13, T:0.25
Consensus pattern (30 bp):
GTAGAAGTTTATTACAACTAGAAAAACAAA
Found at i:33867244 original size:7 final size:6
Alignment explanation
Indices: 33867231--33867268 Score: 67
Period size: 6 Copynumber: 6.2 Consensus size: 6
33867221 ATTTTTCAGG
33867231 TCATTT TCATTTT TCATTT TCATTT TCATTT TCATTT T
1 TCATTT TCA-TTT TCATTT TCATTT TCATTT TCATTT T
33867269 GGAGAAAACC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (6 bp):
TCATTT
Found at i:33873356 original size:16 final size:16
Alignment explanation
Indices: 33873335--33873365 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33873325 TTATGCATGC
*
33873335 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
33873351 AAAATACAAAAGACA
1 AAAATACAAAAGACA
33873366 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:33874335 original size:21 final size:21
Alignment explanation
Indices: 33874309--33874351 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
33874299 AAATCGACAA
* *
33874309 TTATTAGCTTATACAAAAGAG
1 TTATTAACCTATACAAAAGAG
33874330 TTATTAACCTATACAAAAGAG
1 TTATTAACCTATACAAAAGAG
33874351 T
1 T
33874352 GAACACTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.33
Consensus pattern (21 bp):
TTATTAACCTATACAAAAGAG
Found at i:33878349 original size:21 final size:21
Alignment explanation
Indices: 33878323--33878363 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
33878313 AGACGAGCAA
* *
33878323 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
33878344 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
33878364 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:33881387 original size:16 final size:18
Alignment explanation
Indices: 33881344--33881389 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
33881334 TCAACCTATC
33881344 TAATAATAAATATATATTA
1 TAAT-ATAAATATATATTA
33881363 TAATTTATAAATAT-T-TTA
1 TAA--TATAAATATATATTA
33881381 TAATATAAA
1 TAATATAAA
33881390 CACAAGCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
16 6 0.24
18 6 0.24
19 4 0.16
20 8 0.32
21 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TAATATAAATATATATTA
Found at i:33890304 original size:28 final size:28
Alignment explanation
Indices: 33890271--33890469 Score: 236
Period size: 28 Copynumber: 7.1 Consensus size: 28
33890261 CAAGCTTCCA
* *
33890271 TTTCATAGATTACCACAAAGACTTCCCT
1 TTTCATAGATCACCACAAAGGCTTCCCT
* * **
33890299 TTTCATAGATCGCAACAAAGGCTTCAAT
1 TTTCATAGATCACCACAAAGGCTTCCCT
** *
33890327 TTTCATAGATTGCCACAAAGGCTTTCCT
1 TTTCATAGATCACCACAAAGGCTTCCCT
* *
33890355 TTTTATAGATCACCATAAAGGCTTCCCT
1 TTTCATAGATCACCACAAAGGCTTCCCT
*
33890383 TTTTATAGATCACCACAAAGGCTTCCCT
1 TTTCATAGATCACCACAAAGGCTTCCCT
* * *
33890411 TTTTATAGATCGCCACAAAGGCTTCTCT
1 TTTCATAGATCACCACAAAGGCTTCCCT
* * *
33890439 TTTCACAAATCACCACAAAGGCTTCCTT
1 TTTCATAGATCACCACAAAGGCTTCCCT
33890467 TTT
1 TTT
33890470 TATGACATGT
Statistics
Matches: 146, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 146 1.00
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (28 bp):
TTTCATAGATCACCACAAAGGCTTCCCT
Found at i:33890332 original size:56 final size:56
Alignment explanation
Indices: 33890271--33890472 Score: 260
Period size: 56 Copynumber: 3.6 Consensus size: 56
33890261 CAAGCTTCCA
* * * * *
33890271 TTTCATAGATTACCACAAAGACTTCCCTTTTCATAGATCGCAACAAAGGCTTCAAT
1 TTTCATAGATCACCACAAAGGCTTCCCTTTTTATAGATCGCCACAAAGGCTTCACT
** * * * *
33890327 TTTCATAGATTGCCACAAAGGCTTTCCTTTTTATAGATCACCATAAAGGCTTCCCT
1 TTTCATAGATCACCACAAAGGCTTCCCTTTTTATAGATCGCCACAAAGGCTTCACT
* *
33890383 TTTTATAGATCACCACAAAGGCTTCCCTTTTTATAGATCGCCACAAAGGCTTCTCT
1 TTTCATAGATCACCACAAAGGCTTCCCTTTTTATAGATCGCCACAAAGGCTTCACT
* * *
33890439 TTTCACAAATCACCACAAAGGCTTCCTTTTTTAT
1 TTTCATAGATCACCACAAAGGCTTCCCTTTTTAT
33890473 GACATGTTTA
Statistics
Matches: 126, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 126 1.00
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (56 bp):
TTTCATAGATCACCACAAAGGCTTCCCTTTTTATAGATCGCCACAAAGGCTTCACT
Found at i:33893789 original size:75 final size:76
Alignment explanation
Indices: 33893701--33893844 Score: 211
Period size: 76 Copynumber: 1.9 Consensus size: 76
33893691 AAACCGACAG
* * * *
33893701 TATAATAAGTGTGCC-AGCATTAGTCAGATAAACTGACGAAGATTTGTGCCTAGCGCTAGTCAGA
1 TATAATAAGTGTGCCTAGCACTAGTCAGATAAACTGACGAA-AGTTGCGCCTAGAGCTAGTCAGA
33893765 TAAACTGGCAAA
65 TAAACTGGCAAA
* *
33893777 TATAATTA-TGTGCCTAGCACTAGTCAGATAAACTGACGAAAGTTGCGCCTAGAGCTAGTCGGAT
1 TATAATAAGTGTGCCTAGCACTAGTCAGATAAACTGACGAAAGTTGCGCCTAGAGCTAGTCAGAT
33893841 AAAC
66 AAAC
33893845 CAACAAATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
75 30 0.49
76 31 0.51
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (76 bp):
TATAATAAGTGTGCCTAGCACTAGTCAGATAAACTGACGAAAGTTGCGCCTAGAGCTAGTCAGAT
AAACTGGCAAA
Found at i:33893852 original size:75 final size:76
Alignment explanation
Indices: 33893680--33893856 Score: 225
Period size: 75 Copynumber: 2.4 Consensus size: 76
33893670 TGCACCTAAT
* * * *
33893680 GCTAGTCGGGTAAACCGAC-AGTATAATAAGTGTGCCAGCATTAGTCAGATAAACTGACGAAGAT
1 GCTAGTCGGATAAACCGACAAATATAATAAGTGTGCCAGCACTAGTCAGATAAACTGACGAAGAG
* *
33893744 TTGTGCCTAGC
66 TTGCGCCTAGA
* * * *
33893755 GCTAGTCAGATAAACTGGCAAATATAATTA-TGTGCCTAGCACTAGTCAGATAAACTGACGAA-A
1 GCTAGTCGGATAAACCGACAAATATAATAAGTGTGCC-AGCACTAGTCAGATAAACTGACGAAGA
33893818 GTTGCGCCTAGA
65 GTTGCGCCTAGA
*
33893830 GCTAGTCGGATAAACCAACAAATATAA
1 GCTAGTCGGATAAACCGACAAATATAA
33893857 AGGATGTGCC
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
75 54 0.63
76 32 0.37
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (76 bp):
GCTAGTCGGATAAACCGACAAATATAATAAGTGTGCCAGCACTAGTCAGATAAACTGACGAAGAG
TTGCGCCTAGA
Found at i:33898831 original size:101 final size:100
Alignment explanation
Indices: 33898726--33899018 Score: 398
Period size: 101 Copynumber: 2.9 Consensus size: 100
33898716 TTTTGTTAAA
*
33898726 TTTTTTTAATTTTTCGGTGCCGCCTCTTCATGTGGAGGCACCAAAATCAGTAAAAAAGAAATTCC
1 TTTTTTTAATTTTTCGGTGTCGCCTCTTCATGTGGAGGCACCAAAATCAGTAAAAAA-AAATT-C
* *
33898791 CCTAGTGCCAACTTTAGATGTGGCGGCACC-AGTAA-T
64 CCTAGTGCCAACTCTAAATGTGGCGGCACCTA-TAATT
* *
33898827 TTTTTTTACTTTTTCGGTGTCGCCTCATCATGTGGAGGCACCAAAATCTA-TAAAAAAAAATT-C
1 TTTTTTTAATTTTTCGGTGTCGCCTCTTCATGTGGAGGCACCAAAATC-AGTAAAAAAAAATTCC
* * *
33898890 CTAGTGCCAACTCCAAATGTGACGACACCTATAATT
65 CTAGTGCCAACTCTAAATGTGGCGGCACCTATAATT
33898926 TTTTTTTGAATTTTTCGGTGTCGCCTCTTCATGTGGAGGCACCAAAATCAGT-AAAAAAAATTCT
1 TTTTTTT-AATTTTTCGGTGTCGCCTCTTCATGTGGAGGCACCAAAATCAGTAAAAAAAAATTC-
* * *
33898990 CTTGGTGTCAACTCTAAATGTGGCGGCAC
64 CCTAGTGCCAACTCTAAATGTGGCGGCAC
33899019 TACTAGCTAT
Statistics
Matches: 169, Mismatches: 16, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
98 28 0.17
99 20 0.12
100 45 0.27
101 75 0.44
102 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (100 bp):
TTTTTTTAATTTTTCGGTGTCGCCTCTTCATGTGGAGGCACCAAAATCAGTAAAAAAAAATTCCC
TAGTGCCAACTCTAAATGTGGCGGCACCTATAATT
Found at i:33900127 original size:102 final size:101
Alignment explanation
Indices: 33899943--33900194 Score: 246
Period size: 102 Copynumber: 2.4 Consensus size: 101
33899933 CAGTTGCCAC
*
33899943 CACATTTGAAGTTGACACCAAGGGAAATTTTTTTTTACTGATTTTGGTGTCCCCACATAAAGAAG
1 CACATTTGAAGTTGACACCAAGGGAAATTTTTTTTTACAGATTTTGGTGTCCCCACATAAAGAAG
**
33900008 GGGCATTGAAAATTTCAAAAAAACTACTAGTGCTAT
66 GGGCACCGAAAATTTCAAAAAAACTACTAGTGCTAT
* * *
33900044 CACATTTTG-AGTTGGCACC-AGAGGAAATTTTCTTTTTACAGATTTTGGTG-CCTCTACATATA
1 CACA-TTTGAAGTTGACACCAAG-GGAAATTTT-TTTTTACAGATTTTGGTGTCC-CCACATAAA
* * **
33900106 G-AGGCGGCACCGAATAA-TTCAAAAAATAACAAGTACCAGTGTTGC
62 GAAGG-GGCACCGAA-AATTTC-AAAAA-AAC---TACTAGTGCTAT
* * *
33900151 CACATTTGGAGTTGACA-CTAGGAAAATTTTTTTTTACAGATTTT
1 CACATTTGAAGTTGACACCAAGGGAAATTTTTTTTTACAGATTTT
33900195 AGCGCCTCCA
Statistics
Matches: 126, Mismatches: 12, Indels: 22
0.79 0.08 0.14
Matches are distributed among these distances:
100 2 0.02
101 27 0.21
102 39 0.31
103 7 0.06
104 3 0.02
105 14 0.11
106 13 0.10
107 21 0.17
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (101 bp):
CACATTTGAAGTTGACACCAAGGGAAATTTTTTTTTACAGATTTTGGTGTCCCCACATAAAGAAG
GGGCACCGAAAATTTCAAAAAAACTACTAGTGCTAT
Found at i:33906882 original size:31 final size:30
Alignment explanation
Indices: 33906847--33907010 Score: 115
Period size: 31 Copynumber: 5.4 Consensus size: 30
33906837 GAAAACCCTA
*
33906847 AAGTTCAAGCCTTAATGTGGGAACAATTGCC
1 AAGTTCAGGCC-TAATGTGGGAACAATTGCC
* **
33906878 AAGTTCAGGCCCTAACT-T-GGACCAAAAAG--
1 AAGTTCAGG-CCTAA-TGTGGGAAC-AATTGCC
* *
33906907 AAGTTCAGGCACCAATGTGGGAA-AAGCTGCC
1 AAGTTCAGGC-CTAATGTGGGAACAA-TTGCC
*
33906938 AAGTGCAGGTCCTAATGTGGGAACAATTGCC
1 AAGTTCAGG-CCTAATGTGGGAACAATTGCC
* * *
33906969 AAGTTCAGACCCCAATGTGGGAA-AAGTTTCC
1 AAGTTCAG-GCCTAATGTGGGAACAA-TTGCC
33907000 AAGTTCAGGCC
1 AAGTTCAGGCC
33907011 CCAAATAATA
Statistics
Matches: 104, Mismatches: 16, Indels: 27
0.71 0.11 0.18
Matches are distributed among these distances:
28 4 0.04
29 14 0.13
30 11 0.11
31 69 0.66
32 6 0.06
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.21
Consensus pattern (30 bp):
AAGTTCAGGCCTAATGTGGGAACAATTGCC
Found at i:33907013 original size:31 final size:31
Alignment explanation
Indices: 33906907--33907014 Score: 137
Period size: 31 Copynumber: 3.5 Consensus size: 31
33906897 GACCAAAAAG
* *
33906907 AAGTTCAGGCACCAATGTGGGAAAAGCTGCC
1 AAGTTCAGGCCCCAATGTGGGAAAAGTTGCC
* * *
33906938 AAGTGCAGGTCCTAATGTGGGAACAA-TTGCC
1 AAGTTCAGGCCCCAATGTGGGAA-AAGTTGCC
* *
33906969 AAGTTCAGACCCCAATGTGGGAAAAGTTTCC
1 AAGTTCAGGCCCCAATGTGGGAAAAGTTGCC
33907000 AAGTTCAGGCCCCAA
1 AAGTTCAGGCCCCAA
33907015 ATAATAACTT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
30 2 0.03
31 60 0.94
32 2 0.03
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.19
Consensus pattern (31 bp):
AAGTTCAGGCCCCAATGTGGGAAAAGTTGCC
Found at i:33917379 original size:21 final size:20
Alignment explanation
Indices: 33917350--33917404 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
33917340 GGATGGAAGG
* *
33917350 CAATGGCAAAAAGTGAGAAAA
1 CAATAGCAAAAA-TGAAAAAA
33917371 CAATAGCAAAACATGAAAAAA
1 CAATAGCAAAA-ATGAAAAAA
*
33917392 CAGTAGCAAAAAT
1 CAATAGCAAAAAT
33917405 AACAAATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 2 0.07
21 27 0.90
22 1 0.03
ACGTcount: A:0.60, C:0.13, G:0.16, T:0.11
Consensus pattern (20 bp):
CAATAGCAAAAATGAAAAAA
Found at i:33917751 original size:57 final size:54
Alignment explanation
Indices: 33917690--33917830 Score: 160
Period size: 57 Copynumber: 2.5 Consensus size: 54
33917680 CAGGTTATAT
*
33917690 ATTATTTTTATAATATTTATATTAAGAATGCT-ATTAAATTATATATTATTTTATTAA
1 ATTATTTTTATAATAATTATATTAA-AATG-TGATTAAATTATATATTA--TTATTAA
* * *
33917747 ATTATTTTTAACAAAAATTATATTAAAATGTGATTAAATTATTTATTATTATTAA
1 ATTATTTTT-ATAATAATTATATTAAAATGTGATTAAATTATATATTATTATTAA
*
33917802 ATTATATTTAATAATAATCT-TATTAAAAT
1 ATTAT-TTTTATAATAAT-TATATTAAAAT
33917831 TTAATAACAA
Statistics
Matches: 73, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
55 27 0.37
56 5 0.07
57 28 0.38
58 13 0.18
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (54 bp):
ATTATTTTTATAATAATTATATTAAAATGTGATTAAATTATATATTATTATTAA
Found at i:33917826 original size:55 final size:56
Alignment explanation
Indices: 33917706--33917830 Score: 157
Period size: 55 Copynumber: 2.2 Consensus size: 56
33917696 TTTATAATAT
*
33917706 TTATATTAAGAATGCTATTAAATTATATATTATTTTATTAAATTATTTTTAACAAAAA
1 TTATATTAA-AATGCTATTAAATTATATATTA-TTTATTAAATTATATTTAACAAAAA
* * *
33917764 TTATATTAAAATG-TGATTAAATTATTTATTA-TTATTAAATTATATTTAATAATAA
1 TTATATTAAAATGCT-ATTAAATTATATATTATTTATTAAATTATATTTAACAAAAA
33917819 TCT-TATTAAAAT
1 T-TATATTAAAAT
33917831 TTAATAACAA
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
55 31 0.51
56 2 0.03
57 19 0.31
58 9 0.15
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (56 bp):
TTATATTAAAATGCTATTAAATTATATATTATTTATTAAATTATATTTAACAAAAA
Found at i:33918354 original size:28 final size:28
Alignment explanation
Indices: 33918252--33918349 Score: 164
Period size: 27 Copynumber: 3.5 Consensus size: 28
33918242 AAAAATAAAA
33918252 ATTTACCAAAATATTACAACTTTTTTTTT
1 ATTTACCAAAATATTACAAC-TTTTTTTT
33918281 ATTTACCAAAATATTACAAC-TTTTTTT
1 ATTTACCAAAATATTACAACTTTTTTTT
33918308 ATTTACCAAAATATATA-AACTTTTTTTT
1 ATTTACCAAAATAT-TACAACTTTTTTTT
33918336 ATTTACCAAAATAT
1 ATTTACCAAAATAT
33918350 ATAAAAAAAA
Statistics
Matches: 67, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
27 24 0.36
28 23 0.34
29 20 0.30
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (28 bp):
ATTTACCAAAATATTACAACTTTTTTTT
Found at i:33918366 original size:8 final size:9
Alignment explanation
Indices: 33918352--33918377 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
33918342 CAAAATATAT
33918352 AAAAAAAAC
1 AAAAAAAAC
33918361 AAAAAAAAC
1 AAAAAAAAC
33918370 AAAAAAAA
1 AAAAAAAA
33918378 TTGACACAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:33918427 original size:27 final size:26
Alignment explanation
Indices: 33918397--33918453 Score: 96
Period size: 27 Copynumber: 2.2 Consensus size: 26
33918387 CCTGATCACC
33918397 CCAATGCCATTGGCGGCACCAAAGGTG
1 CCAATGCCATTGGCGGCACC-AAGGTG
*
33918424 CCAATGCCATTGGCGGCACCAATGTG
1 CCAATGCCATTGGCGGCACCAAGGTG
33918450 CCAA
1 CCAA
33918454 AGGACTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 9 0.31
27 20 0.69
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.16
Consensus pattern (26 bp):
CCAATGCCATTGGCGGCACCAAGGTG
Found at i:33918976 original size:19 final size:18
Alignment explanation
Indices: 33918952--33919012 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 18
33918942 TCTAATTAAG
33918952 TAATAATTCTATTTTAATT
1 TAATAA-TCTATTTTAATT
* * *
33918971 TAATAAACTATTCTCATT
1 TAATAATCTATTTTAATT
* *
33918989 TAATAACTATATTTTAAAT
1 TAATAA-TCTATTTTAATT
33919008 TAATA
1 TAATA
33919013 GAAATATCAG
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
18 15 0.45
19 18 0.55
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (18 bp):
TAATAATCTATTTTAATT
Found at i:33918981 original size:18 final size:18
Alignment explanation
Indices: 33918960--33919012 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
33918950 AGTAATAATT
33918960 CTATTTTAATTTAATAAA
1 CTATTTTAATTTAATAAA
* *
33918978 CTATTCTCATTTAAT-AA
1 CTATTTTAATTTAATAAA
*
33918995 CTATATTTTAAATTAATA
1 C--TATTTTAATTTAATA
33919013 GAAATATCAG
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
17 3 0.11
18 13 0.48
19 11 0.41
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (18 bp):
CTATTTTAATTTAATAAA
Found at i:33919609 original size:29 final size:27
Alignment explanation
Indices: 33919579--33919675 Score: 160
Period size: 27 Copynumber: 3.5 Consensus size: 27
33919569 TTTTTTTTAT
33919579 ATATTTTGGTAAATAAAAAAAGTT-TA
1 ATATTTTGGTAAATAAAAAAAGTTGTA
33919605 TATATTTTGGTAAATAAAAAAAGTTGTA
1 -ATATTTTGGTAAATAAAAAAAGTTGTA
33919633 ATATTTTGGTAAATAAAAAAAAAGTTGTA
1 ATATTTTGGTAAAT--AAAAAAAGTTGTA
33919662 ATATTTTGGTAAAT
1 ATATTTTGGTAAAT
33919676 TTTTATTTTT
Statistics
Matches: 67, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
27 38 0.57
28 2 0.03
29 27 0.40
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.39
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAGTTGTA
Found at i:33921674 original size:106 final size:107
Alignment explanation
Indices: 33921481--33921683 Score: 284
Period size: 106 Copynumber: 1.9 Consensus size: 107
33921471 TGGATTAAGA
* * * *
33921481 TTTAAGAGGATATTTGACTATTTGGTCAAACGAAAAAGTCGAAGCCCAGCACATTAGGGCACGTT
1 TTTAAGAGGATATTCGACTATTTGGTCAAACGAAAAAATCGAAACCCAACACATTAGGGCACGTT
* *
33921546 TCCTCGAATTTCCAAACACAAAATATTGCCTTACTCTGAAAT
66 TCCTCGAATTCCCAAACACAAAATATTACCTTACTCTGAAAT
* *
33921588 TTTAA-AGGATATTCGGCTATTTGGTCGAACGAAAAAATCGAAACCCAACACATTAGGGCACGCT
1 TTTAAGAGGATATTCGACTATTTGGTCAAACGAAAAAATCGAAACCCAACACATTAGGGCACG-T
* **
33921652 TT-CTCTAATTCCCAAATGCAAAATATTACCTT
65 TTCCTCGAATTCCCAAACACAAAATATTACCTT
33921684 TATTATTTTT
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
106 76 0.90
107 8 0.10
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (107 bp):
TTTAAGAGGATATTCGACTATTTGGTCAAACGAAAAAATCGAAACCCAACACATTAGGGCACGTT
TCCTCGAATTCCCAAACACAAAATATTACCTTACTCTGAAAT
Found at i:33922695 original size:106 final size:107
Alignment explanation
Indices: 33922502--33922704 Score: 302
Period size: 106 Copynumber: 1.9 Consensus size: 107
33922492 AAAAATAATA
* * * *
33922502 AAGGCAATATTTTGCATTTGGGAATTCGAGAAAGCGTGCCCTAATGTGTTTGGTTTCGATTTTTT
1 AAGGCAATATTTTGCATTTGGAAATTCGAGAAAGCGTGCCCTAATGTGCTGGGCTTCGATTTTTT
*
33922567 CGTTCGACCAAATAGCCGAATATCCT-TTAAAATTTCAGAGT
66 CGTTCGACCAAATAGCCAAATATCCTCTTAAAATTTCAGAGT
* *
33922608 AAGGTAATATTTTGCGTTTGGAAATTCGAGGAAA-CGTGCCCTAATGTGCTGGGCTTCGATTTTT
1 AAGGCAATATTTTGCATTTGGAAATTCGA-GAAAGCGTGCCCTAATGTGCTGGGCTTCGATTTTT
* *
33922672 TCGTTTGACCAAATAGTCAAATATCCTCTTAAA
65 TCGTTCGACCAAATAGCCAAATATCCTCTTAAA
33922705 TCTTAATTCA
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
106 77 0.90
107 9 0.10
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (107 bp):
AAGGCAATATTTTGCATTTGGAAATTCGAGAAAGCGTGCCCTAATGTGCTGGGCTTCGATTTTTT
CGTTCGACCAAATAGCCAAATATCCTCTTAAAATTTCAGAGT
Found at i:33924142 original size:19 final size:18
Alignment explanation
Indices: 33924101--33924143 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
33924091 CGTCTCTTTT
33924101 TGCATTCATTTCATGCATC
1 TGCATTCATTTCATGCA-C
33924120 TGCATTACATTTCATTGCA-
1 TGCATT-CATTTCA-TGCAC
33924139 TGCAT
1 TGCAT
33924144 CAAATTTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 11 0.50
20 7 0.32
21 4 0.18
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (18 bp):
TGCATTCATTTCATGCAC
Done.