Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 114 of 203
Found at i:35969107 original size:16 final size:16
Alignment explanation
Indices: 35969086--35969118 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
35969076 CATTTATCAC
35969086 TCAATTTA-CACCTTTT
1 TCAATTTAGC-CCTTTT
35969102 TCAATTTAGCCCTTTT
1 TCAATTTAGCCCTTTT
35969118 T
1 T
35969119 AGTTGTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.94
17 1 0.06
ACGTcount: A:0.21, C:0.24, G:0.03, T:0.52
Consensus pattern (16 bp):
TCAATTTAGCCCTTTT
Found at i:35969974 original size:13 final size:13
Alignment explanation
Indices: 35969958--35969991 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
35969948 CGTGTCCTTC
*
35969958 ACACGGCTGAGAT
1 ACACGGCCGAGAT
*
35969971 ACACGACCGAGAT
1 ACACGGCCGAGAT
35969984 ACACGGCC
1 ACACGGCC
35969992 ATGTCTTTGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.32, C:0.32, G:0.26, T:0.09
Consensus pattern (13 bp):
ACACGGCCGAGAT
Found at i:35971308 original size:45 final size:45
Alignment explanation
Indices: 35971257--35971342 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
35971247 AAAACATGTA
* * *
35971257 TCACATACATCATGAATTTAGACCACAACTCAATGAGTTCAAATG
1 TCACATACATCATGAACTCAGACCACAACTCAATGAATTCAAATG
*
35971302 TCACATATATCATGAACTCAGACCACAACTCAATGAATTCA
1 TCACATACATCATGAACTCAGACCACAACTCAATGAATTCA
35971343 GATCACATAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (45 bp):
TCACATACATCATGAACTCAGACCACAACTCAATGAATTCAAATG
Found at i:35971889 original size:19 final size:18
Alignment explanation
Indices: 35971857--35971893 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
35971847 GAGTGAAAGG
35971857 AATGAGAAACGGGCCAAA
1 AATGAGAAACGGGCCAAA
*
35971875 AATGAAGAAATGGGCCAAA
1 AATG-AGAAACGGGCCAAA
35971894 GTACAAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.51, C:0.14, G:0.27, T:0.08
Consensus pattern (18 bp):
AATGAGAAACGGGCCAAA
Found at i:35985444 original size:16 final size:16
Alignment explanation
Indices: 35985423--35985454 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
35985413 CATTTGGATA
35985423 ATGTATATATGATGAT
1 ATGTATATATGATGAT
*
35985439 ATGTATATATTATGAT
1 ATGTATATATGATGAT
35985455 GCTTGAGTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.47
Consensus pattern (16 bp):
ATGTATATATGATGAT
Found at i:35988758 original size:50 final size:50
Alignment explanation
Indices: 35988683--35988784 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
35988673 GGAGCCAGAA
35988683 TGATGAAGTTATTCAGATTGAATCTAGTGATTTGTATGGTTTACCAACAG
1 TGATGAAGTTATTCAGATTGAATCTAGTGATTTGTATGGTTTACCAACAG
35988733 TGATGAAGTTATTCAGATTGAATCTAGTGATTTGTATGGTTTACCAACAG
1 TGATGAAGTTATTCAGATTGAATCTAGTGATTTGTATGGTTTACCAACAG
35988783 TG
1 TG
35988785 TTTTCTTCGA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (50 bp):
TGATGAAGTTATTCAGATTGAATCTAGTGATTTGTATGGTTTACCAACAG
Found at i:35996424 original size:64 final size:64
Alignment explanation
Indices: 35996319--35996526 Score: 188
Period size: 67 Copynumber: 3.2 Consensus size: 64
35996309 CATCATGTGT
*
35996319 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACAAG--A-TA-AATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
35996384 TAG
62 TAG
** * * * * * *
35996387 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCTAGTGAAGGACACCATGT
1 ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGT
35996452 AG
63 AG
* * * * *
35996454 ACAAGAAAGCTACAAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACAAGATAAA-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
35996516 TACAAGAGAGC
1 -ACAAGAGAGC
35996527 CGAACTATAT
Statistics
Matches: 114, Mismatches: 21, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.16
64 21 0.18
65 12 0.11
66 17 0.15
67 29 0.25
68 16 0.14
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:36000318 original size:45 final size:45
Alignment explanation
Indices: 36000268--36000355 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
36000258 AAACATGTGC
36000268 CACATACATCATGAACTTAGACCACAACTCAATGAGTTCAGATGT
1 CACATACATCATGAACTTAGACCACAACTCAATGAGTTCAGATGT
* *
36000313 CACATATATCATGAACTTAGACTACAACTCAATGAGTTCAGAT
1 CACATACATCATGAACTTAGACCACAACTCAATGAGTTCAGAT
36000356 CAGATAGCTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.39, C:0.23, G:0.12, T:0.26
Consensus pattern (45 bp):
CACATACATCATGAACTTAGACCACAACTCAATGAGTTCAGATGT
Found at i:36002455 original size:28 final size:28
Alignment explanation
Indices: 36002424--36002491 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
36002414 AATGCCTCGT
* **
36002424 ACACTAAGTGTCATACTCGATATCTTGC
1 ACACTAAGTGTCACACTCGATATCTCAC
* *
36002452 ACACTAAGTGCCACACTCGTTATCTCAC
1 ACACTAAGTGTCACACTCGATATCTCAC
36002480 ACACTAAGTGTC
1 ACACTAAGTGTC
36002492 GTACATAGTC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.28
Consensus pattern (28 bp):
ACACTAAGTGTCACACTCGATATCTCAC
Found at i:36002580 original size:40 final size:40
Alignment explanation
Indices: 36002496--36002580 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
36002486 AGTGTCGTAC
* * * *
36002496 ATAGTCAAAGCTATCTCAAATCATACACTAAGTGCAATAT
1 ATAGCCAAAGCTATCTCAAATCACACACTAAGTGCAACAA
* * * *
36002536 ATAGCCAAAGCTATGTCGAATCGCACACTAAGTGCCACAA
1 ATAGCCAAAGCTATCTCAAATCACACACTAAGTGCAACAA
36002576 ATAGC
1 ATAGC
36002581 TGATTTGTTG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.40, C:0.24, G:0.14, T:0.22
Consensus pattern (40 bp):
ATAGCCAAAGCTATCTCAAATCACACACTAAGTGCAACAA
Found at i:36004367 original size:13 final size:13
Alignment explanation
Indices: 36004349--36004373 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36004339 CTAGCACATA
36004349 GCCGTGTGGCTTG
1 GCCGTGTGGCTTG
36004362 GCCGTGTGGCTT
1 GCCGTGTGGCTT
36004374 CAATTTGTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.24, G:0.44, T:0.32
Consensus pattern (13 bp):
GCCGTGTGGCTTG
Found at i:36004481 original size:20 final size:20
Alignment explanation
Indices: 36004443--36004481 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36004433 GATCACATGG
* *
36004443 CCTACCCACACAGGTGTGTC
1 CCTAACCACACAGGCGTGTC
*
36004463 CCTAACCACACGGGCGTGT
1 CCTAACCACACAGGCGTGT
36004482 GACCCCTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.38, G:0.23, T:0.18
Consensus pattern (20 bp):
CCTAACCACACAGGCGTGTC
Found at i:36005580 original size:34 final size:34
Alignment explanation
Indices: 36005537--36005607 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
36005527 GTCTTTGCCA
36005537 AATAAACTTTCATCGGAACCAACAAGAAAATTTG
1 AATAAACTTTCATCGGAACCAACAAGAAAATTTG
* *
36005571 AATAAACTTTCATCGTAACCAATAAGAAAATTTG
1 AATAAACTTTCATCGGAACCAACAAGAAAATTTG
36005605 AAT
1 AAT
36005608 CAAGTGTCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.48, C:0.15, G:0.10, T:0.27
Consensus pattern (34 bp):
AATAAACTTTCATCGGAACCAACAAGAAAATTTG
Found at i:36008320 original size:31 final size:31
Alignment explanation
Indices: 36008277--36008340 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36008267 CCTTTTCATA
36008277 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
36008308 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
36008339 TT
1 TT
36008341 ACTATAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:36008567 original size:25 final size:23
Alignment explanation
Indices: 36008532--36008641 Score: 114
Period size: 25 Copynumber: 4.6 Consensus size: 23
36008522 GCTTTATCAT
*
36008532 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACT-GAGGCATAGCC-CTTTTA
*
36008557 ATAACTAGAGGCCTAGCCTCTTTTA
1 ATAACT-GAGGCATAGCC-CTTTTA
* *
36008582 ATAACTGGGGCAAAGCCC-TTTA
1 ATAACTGAGGCATAGCCCTTTTA
*
36008604 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGAGGCAT-AGCCCTTTTA
*
36008628 ATAACTGGGGCATA
1 ATAACTGAGGCATA
36008642 AGCTAAAAAC
Statistics
Matches: 78, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
22 16 0.21
23 7 0.09
24 25 0.32
25 30 0.38
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
ATAACTGAGGCATAGCCCTTTTA
Found at i:36008631 original size:46 final size:48
Alignment explanation
Indices: 36008553--36008644 Score: 136
Period size: 46 Copynumber: 2.0 Consensus size: 48
36008543 CCTAGCCTCT
*
36008553 TTTAATAACTAGAGGCCTAGCCTCTTTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTAGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCC
*
36008600 TTTAATAACT-GGGGCATAAGCC-CTTTTAATAACTGGGGCATAAGC
1 TTTAATAACTAGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGC
36008645 TAAAAACCCA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
46 23 0.56
47 18 0.44
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (48 bp):
TTTAATAACTAGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCC
Found at i:36008632 original size:24 final size:25
Alignment explanation
Indices: 36008532--36008644 Score: 139
Period size: 24 Copynumber: 4.7 Consensus size: 25
36008522 GCTTTATCAT
*
36008532 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCCTCTTTTA
* *
36008557 ATAACTAGAGGCCT-AGCCTCTTTTA
1 ATAACT-GGGGCATAAGCCTCTTTTA
36008582 ATAACTGGGGCA-AAGCC-C-TTTA
1 ATAACTGGGGCATAAGCCTCTTTTA
36008604 ATAACTGGGGCATAAGCC-CTTTTA
1 ATAACTGGGGCATAAGCCTCTTTTA
36008628 ATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGC
36008645 TAAAAACCCA
Statistics
Matches: 81, Mismatches: 3, Indels: 9
0.87 0.03 0.10
Matches are distributed among these distances:
22 16 0.20
23 7 0.09
24 29 0.36
25 28 0.35
26 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (25 bp):
ATAACTGGGGCATAAGCCTCTTTTA
Found at i:36008698 original size:9 final size:9
Alignment explanation
Indices: 36008684--36008740 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
36008674 ATCTCGTGTG
36008684 CATATCATA
1 CATATCATA
*
36008693 CATATCATGTG
1 CATATCA--TA
36008704 CATATCATA
1 CATATCATA
* *
36008713 CATGTCATGTG
1 CATATCA--TA
36008724 CATATCATA
1 CATATCATA
36008733 CATATCAT
1 CATATCAT
36008741 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:36008703 original size:20 final size:20
Alignment explanation
Indices: 36008680--36008742 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
36008670 GAACATCTCG
36008680 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
36008700 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
36008720 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
36008740 TGT
1 TGT
36008743 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:36026155 original size:55 final size:54
Alignment explanation
Indices: 36026067--36026311 Score: 256
Period size: 55 Copynumber: 4.6 Consensus size: 54
36026057 ATTAGGGTTT
*
36026067 AAGGATGCCATGTAAGACCATGCCAAGGA-ATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAA-GACATGGC-ATTGGTAA-GTTTCATAAGGC
* * *
36026122 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGC
* * * *
36026177 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTAGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * *
36026230 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTT--TAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * *
36026279 AAGGATACCATATAAGACCATGACAAGTCATGG
1 AAGGATACCATGTAAGACCATGCCAAGACATGG
36026312 AAATGGTGAG
Statistics
Matches: 162, Mismatches: 22, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
49 29 0.18
52 7 0.04
53 43 0.27
54 14 0.09
55 65 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
Found at i:36026273 original size:108 final size:110
Alignment explanation
Indices: 36026074--36026275 Score: 311
Period size: 108 Copynumber: 1.9 Consensus size: 110
36026064 TTTAAGGATG
* *
36026074 CCATGTAAGACCATGCCAAGGAATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGAATGGCAATTAGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
36026139 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTC
* *
36026184 CCATGTAAGACCATGCCAAGGCATGGC-ATTAGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGAATGGCAATTAGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
36026246 ACCATGTCGAGACATGGCAATGGTAAGTTT
65 ACCATGTCAAGACATGGCAATGATAAGTTT
36026276 TAAAAGGATA
Statistics
Matches: 84, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 49 0.58
109 6 0.07
110 26 0.31
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGAATGGCAATTAGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:36031525 original size:13 final size:13
Alignment explanation
Indices: 36031507--36031531 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36031497 TGTGGGTGCA
36031507 CACGGCCGTGTCG
1 CACGGCCGTGTCG
36031520 CACGGCCGTGTC
1 CACGGCCGTGTC
36031532 TGGCATTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.36, T:0.16
Consensus pattern (13 bp):
CACGGCCGTGTCG
Found at i:36037540 original size:31 final size:32
Alignment explanation
Indices: 36037480--36037541 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
36037470 ACGAAGTCAC
* *
36037480 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
36037512 CAGATATATATATT-TGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
36037542 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 14 0.52
32 13 0.48
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:36043368 original size:79 final size:78
Alignment explanation
Indices: 36043266--36043489 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
36043256 GCTCCTCGTT
* *
36043266 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
36043331 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* * *
36043346 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCAGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
36043410 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
36043424 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
36043488 GA
63 GA
36043490 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
78 35 0.28
79 56 0.45
80 33 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:36043383 original size:39 final size:40
Alignment explanation
Indices: 36043266--36043489 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
36043256 GCTCCTCGTT
* *
36043266 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
36043306 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
36043346 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
36043385 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
36043424 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
36043465 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36043490 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 73 0.45
40 76 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:36058534 original size:43 final size:43
Alignment explanation
Indices: 36058434--36058536 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
36058424 TTGGTTTTCA
*
36058434 GCACTAAGTGTGCGAGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
36058477 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
36058520 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
36058537 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:36058553 original size:29 final size:29
Alignment explanation
Indices: 36058518--36058591 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
36058508 GTTGTGAGAT
* *
36058518 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
36058547 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
*
36058576 TGACACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36058592 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:36058937 original size:40 final size:42
Alignment explanation
Indices: 36058886--36059073 Score: 162
Period size: 40 Copynumber: 4.7 Consensus size: 42
36058876 CATTTGAATG
36058886 ATATCCGGGCTAAGACCCGAAG-GCAATT-GTGCTAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGAGCAATTCGTGCTAGTTGAT
* *
36058926 ATATCCGGGCTAAGACCCGAAG-GC-ATTGGTGCGAGTT-ACT
1 ATATCCGGGCTAAGACCCGAAGAGCAATTCGTGCTAGTTGA-T
* * * *
36058966 AAATCCGGGCTAA-ATTCCGAAGAGC-ATTTGTGCTAG-TGAG
1 ATATCCGGGCTAAGA-CCCGAAGAGCAATTCGTGCTAGTTGAT
* * ** * *
36059006 GTATCCGGACTAAGTTCCGAAGAGC-ATTCGTGCT-GGTGTT
1 ATATCCGGGCTAAGACCCGAAGAGCAATTCGTGCTAGTTGAT
* *
36059046 ATATCCGGGCTAGGTCCCGAAGAGCAAT
1 ATATCCGGGCTAAGACCCGAAGAGCAAT
36059074 CATGCTGGTG
Statistics
Matches: 123, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
39 6 0.05
40 103 0.84
41 14 0.11
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (42 bp):
ATATCCGGGCTAAGACCCGAAGAGCAATTCGTGCTAGTTGAT
Found at i:36059052 original size:80 final size:80
Alignment explanation
Indices: 36058886--36059073 Score: 197
Period size: 80 Copynumber: 2.4 Consensus size: 80
36058876 CATTTGAATG
* *
36058886 ATATCCGGGCTAAGA-CCCGAAG-GCAATTGTGCTAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAA-ATCCCGAAGAGCAATTGTGCTAGTTGAGATATCCGGACTAAGACCCGAAGG
*
36058949 CATTGGTGCGAGTTACT
65 CATTCGTGCGAGTTA-T
* * * * **
36058966 AAATCCGGGCTAAATTCCGAAGAGCATTTGTGCTAG-TGAGGTATCCGGACTAAGTTCCGAAGAG
1 ATATCCGGGCTAAATCCCGAAGAGCAATTGTGCTAGTTGAGATATCCGGACTAAGACCCGAAG-G
36059030 CATTCGTGCTG-GTGT-T
65 CATTCGTGC-GAGT-TAT
**
36059046 ATATCCGGGCTAGGTCCCGAAGAGCAAT
1 ATATCCGGGCTAAATCCCGAAGAGCAAT
36059074 CATGCTGGTG
Statistics
Matches: 89, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
79 1 0.01
80 63 0.71
81 23 0.26
82 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAATCCCGAAGAGCAATTGTGCTAGTTGAGATATCCGGACTAAGACCCGAAGGC
ATTCGTGCGAGTTAT
Found at i:36059080 original size:40 final size:40
Alignment explanation
Indices: 36059007--36059083 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
36058997 GCTAGTGAGG
* * *
36059007 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
* *
36059047 TATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTG
36059084 ACATGTATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
Found at i:36060902 original size:150 final size:150
Alignment explanation
Indices: 36060631--36060916 Score: 563
Period size: 150 Copynumber: 1.9 Consensus size: 150
36060621 NNNNNNNNNN
36060631 CTCAAACACATAAGAACTTACCATTTGAGCTTAGAACATATCATGGCCACATCATATCTTATTAA
1 CTCAAACACATAAGAACTTACCATTTGAGCTTAGAACATATCATGGCCACATCATATCTTATTAA
*
36060696 ATCAACTCATCATGTCCTATTATAATTGAATTTACTCAATGTGACACCCCTAAAGTGACTCTAGT
66 ATCAACTCATCATGTCCTATTATAATTGAATTTACTCAACGTGACACCCCTAAAGTGACTCTAGT
36060761 CGGAAACTTAAATTCCCAAG
131 CGGAAACTTAAATTCCCAAG
36060781 CTCAAACACATAAGAACTTACCATTTGAGCTTAGAACATATCATGGCCACATCATATCTTATTAA
1 CTCAAACACATAAGAACTTACCATTTGAGCTTAGAACATATCATGGCCACATCATATCTTATTAA
36060846 ATCAACTCATCATGTCCTATTATAATTGAATTTACTCAACGTGACACCCCTAAAGTGACTCTAGT
66 ATCAACTCATCATGTCCTATTATAATTGAATTTACTCAACGTGACACCCCTAAAGTGACTCTAGT
36060911 CGGAAA
131 CGGAAA
36060917 GTGGTTTCGG
Statistics
Matches: 135, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 135 1.00
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (150 bp):
CTCAAACACATAAGAACTTACCATTTGAGCTTAGAACATATCATGGCCACATCATATCTTATTAA
ATCAACTCATCATGTCCTATTATAATTGAATTTACTCAACGTGACACCCCTAAAGTGACTCTAGT
CGGAAACTTAAATTCCCAAG
Found at i:36062906 original size:150 final size:150
Alignment explanation
Indices: 36062630--36062929 Score: 582
Period size: 150 Copynumber: 2.0 Consensus size: 150
36062620 GTTGCCAAAT
36062630 GGATATGATATTATGAAGTGCTGAAAGGATATGTCAGAAGAGTAAAATTGTGATAAACCTGCTCA
1 GGATATGATATTATGAAGTGCTGAAAGGATATGTCAGAAGAGTAAAATTGTGATAAACCTGCTCA
36062695 GGACAGCAGCAGTAACATGAATTTAGAAAATCACCATAAATTCATGGATTTGAATTAGAGGCTGA
66 GGACAGCAGCAGTAACATGAATTTAGAAAATCACCATAAATTCATGGATTTGAATTAGAGGCTGA
36062760 ATGAGACATGAAACTAAAGC
131 ATGAGACATGAAACTAAAGC
*
36062780 GGATGTGATATTATGAAGTGCTGAAAGGATATGTCAGAAGAGTAAAATTGTGATAAACCTGCTCA
1 GGATATGATATTATGAAGTGCTGAAAGGATATGTCAGAAGAGTAAAATTGTGATAAACCTGCTCA
36062845 GGACAGCAGCAGTAACATGAATTTAGAAAATCACCATAAATTCATGGATTTGAATTAGAGGCTGA
66 GGACAGCAGCAGTAACATGAATTTAGAAAATCACCATAAATTCATGGATTTGAATTAGAGGCTGA
*
36062910 ATGAGACATGAAATTAAAGC
131 ATGAGACATGAAACTAAAGC
36062930 TTAATGAGTC
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 148 1.00
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (150 bp):
GGATATGATATTATGAAGTGCTGAAAGGATATGTCAGAAGAGTAAAATTGTGATAAACCTGCTCA
GGACAGCAGCAGTAACATGAATTTAGAAAATCACCATAAATTCATGGATTTGAATTAGAGGCTGA
ATGAGACATGAAACTAAAGC
Found at i:36063369 original size:47 final size:47
Alignment explanation
Indices: 36063287--36063598 Score: 419
Period size: 47 Copynumber: 6.6 Consensus size: 47
36063277 TTAAACCCAT
*
36063287 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGA
*
36063336 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
* * *
36063383 ATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
* *
36063430 ATGTTAAAGTGTATATATATGTGATAAGGCTTAATGGCCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGA
** * *
36063479 ATGTGAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
* * * *
36063526 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATTG-
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGA-TGA
* *
36063573 ATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
36063599 TCCCGAAGGG
Statistics
Matches: 235, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
47 180 0.77
48 2 0.01
49 53 0.23
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
Found at i:36063465 original size:96 final size:96
Alignment explanation
Indices: 36063287--36063598 Score: 427
Period size: 96 Copynumber: 3.3 Consensus size: 96
36063277 TTAAACCCAT
* *
36063287 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTG--TAT
1 ATGTGAAAGTG--TATATGTGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
36063350 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCAATGTGATGA
* * *
36063383 ATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTTAAAGTGTATATAT
1 ATGTGAAAGTGTATATGTGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
36063448 ATGTGATAAGGCTTAATGGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
*
36063479 ATGTGAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATGTGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * *
36063542 ATGTGACAGGGCCGAGTGGCCAATGTGATTG-
66 ATGTGATAAGGCCTAATGGCCAATGTGA-TGA
* **
36063573 ATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGAAAGTGTATATGTGTGATAAG
36063599 TCCCGAAGGG
Statistics
Matches: 193, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
94 92 0.48
95 2 0.01
96 99 0.51
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATGTGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCAATGTGATGA
Found at i:36063568 original size:143 final size:143
Alignment explanation
Indices: 36063287--36063598 Score: 486
Period size: 143 Copynumber: 2.2 Consensus size: 143
36063277 TTAAACCCAT
36063287 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * *
36063352 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATA
66 ACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATA
*
36063417 GCCGATGTGA-TG
131 GCCAATGTGATTG
*
36063429 AATGTTAAAGTGTATATATATGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 -ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * * *
36063494 TGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGT
65 TACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAAT
*
36063559 GGCCAATGTGATTG
130 AGCCAATGTGATTG
*
36063573 ATGTGAAAGTGCATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
36063599 TCCCGAAGGG
Statistics
Matches: 155, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
141 10 0.06
142 1 0.01
143 142 0.92
144 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATA
GCCAATGTGATTG
Found at i:36063760 original size:37 final size:37
Alignment explanation
Indices: 36063719--36063794 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
36063709 GAGTTCTAAG
* * **
36063719 GACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTAGGTCCGGGTAA
*
36063756 GACCCGATAACTTCGTGTGGAGATTAGGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTAGGTCCGGGTAA
36063793 GA
1 GA
36063795 TTTCGTAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.22, C:0.18, G:0.34, T:0.25
Consensus pattern (37 bp):
GACCCGATAACTACGTGTGGAGATTAGGTCCGGGTAA
Found at i:36066936 original size:42 final size:42
Alignment explanation
Indices: 36066876--36066967 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
36066866 TGGCCCATAG
*
36066876 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
36066918 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
36066960 GCCCATTT
1 GCCCATTT
36066968 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:36067183 original size:26 final size:25
Alignment explanation
Indices: 36067112--36067208 Score: 158
Period size: 26 Copynumber: 3.8 Consensus size: 25
36067102 CCTCTTTAAT
*
36067112 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCAATA
36067137 AACTGGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCAATA
*
36067162 AATTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCA-AAGCCCTTTTCAATA
36067188 AACTGGGGCAGAAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTT
36067209 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 33 0.49
26 34 0.51
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAATA
Found at i:36067283 original size:20 final size:20
Alignment explanation
Indices: 36067258--36067312 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
36067248 TTATGAATTC
*
36067258 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
36067277 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
36067298 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
36067313 CCCCACGCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
18 8 0.24
20 23 0.70
21 2 0.06
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:36067870 original size:27 final size:28
Alignment explanation
Indices: 36067839--36067907 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
36067829 TAAGGAACAT
*
36067839 AAGGGCATATT-C-GTCATTTTACCATAC
1 AAGGGC-TATTACGGTCACTTTACCATAC
*
36067866 AAGGG-TATTACGGTCACTTTACCTTAC
1 AAGGGCTATTACGGTCACTTTACCATAC
36067893 AAGGGCT-TTACGGTC
1 AAGGGCTATTACGGTC
36067908 TTTTTACTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
25 4 0.11
26 1 0.03
27 31 0.84
28 1 0.03
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (28 bp):
AAGGGCTATTACGGTCACTTTACCATAC
Found at i:36067913 original size:27 final size:27
Alignment explanation
Indices: 36067851--36067914 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
36067841 GGGCATATTC
36067851 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACCATACAAGGGTATTACG
* *
36067878 GTCACTTTACCTTACAAGGGCT-TTACG
1 GTCATTTTACCATACAAGGG-TATTACG
*
36067905 GTCTTTTTAC
1 GTCATTTTAC
36067915 TTATTAGGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGTATTACG
Found at i:36067999 original size:27 final size:27
Alignment explanation
Indices: 36067969--36068054 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
36067959 GTAAATCTAC
36067969 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
36067996 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
36068022 AGAAAGTCAAGGGTATTTCTGAAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
36068052 AAA
1 AAA
36068055 TTAGGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
26 1 0.02
27 22 0.46
28 7 0.15
29 17 0.35
30 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:36068074 original size:27 final size:27
Alignment explanation
Indices: 36068056--36068159 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 27
36068046 TTTTGTAAAT
36068056 TAGGGGTATTTTGGTAATTTTACAAA-
1 TAGGGGTATTTTGGTAATTTTACAAAC
* * * * *
36068082 TTGAAGGTATTTCGATAATTTCACAAAC
1 TAG-GGGTATTTTGGTAATTTTACAAAC
* * * *
36068110 CAGTGGTATTTTGGTAACTTTAAAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
36068137 TAGGGGTATTTTGGTAATTTTAC
1 TAGGGGTATTTTGGTAATTTTAC
36068160 TGATCGACGG
Statistics
Matches: 59, Mismatches: 17, Indels: 3
0.75 0.22 0.04
Matches are distributed among these distances:
26 2 0.03
27 56 0.95
28 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAAC
Found at i:36068198 original size:27 final size:27
Alignment explanation
Indices: 36068060--36068198 Score: 93
Period size: 27 Copynumber: 5.1 Consensus size: 27
36068050 GTAAATTAGG
* ** *
36068060 GGTATTTTGGTAATTTTACAAA-TTGAA
1 GGTATTTTGGTAATTTTATAAACCAG-T
* * * *
36068087 GGTATTTCGATAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTATAAACCAGT
* * * *
36068114 GGTATTTTGGTAACTTTAAAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCAGT
* * * *
36068141 GGTATTTTGGTAATTTTACTGATCGA-C
1 GGTATTTTGGTAATTTTA-TAAACCAGT
*
36068168 GGTATTTTGGTAATTTTGTAAACCAGT
1 GGTATTTTGGTAATTTTATAAACCAGT
36068195 GGTA
1 GGTA
36068199 AAACAGTAAT
Statistics
Matches: 85, Mismatches: 24, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
26 4 0.05
27 77 0.91
28 4 0.05
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTATAAACCAGT
Found at i:36068207 original size:27 final size:27
Alignment explanation
Indices: 36068177--36068414 Score: 217
Period size: 27 Copynumber: 8.8 Consensus size: 27
36068167 CGGTATTTTG
*
36068177 GTAATTTTGTAAA-CCAGTGGTAAAACA
1 GTAATTCTGTAAATCCAG-GGTAAAACA
* **
36068204 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCCAGGGTAAAACA
** **
36068231 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCCAGGGTAAAACA
* * * *
36068258 GTAATTCTATTAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCCAGGGTAAAACA
* * **
36068285 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCCAGGGTAAAACA
* * *
36068312 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCCAGGGTAAAACA
* *
36068339 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCCAGGGTAAAACA
* **
36068366 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCCAGGGTAAAACA
** *
36068393 GTAATTCTACAAATCGAGGGTA
1 GTAATTCTGTAAATCCAGGGTA
36068415 TTTCAATAAT
Statistics
Matches: 190, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
27 187 0.98
28 3 0.02
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCCAGGGTAAAACA
Found at i:36068432 original size:54 final size:54
Alignment explanation
Indices: 36068195--36068414 Score: 323
Period size: 54 Copynumber: 4.1 Consensus size: 54
36068185 GTAAACCAGT
* * * *
36068195 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAG
1 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAG
* * * *
36068249 GGTAAAATGGTAATTCTATTAATCAAGGGTAAAACGGTAATTCTATAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAG
* * *
36068303 GGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAG
* *
36068357 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAG
36068411 GGTA
1 GGTA
36068415 TTTCAATAAT
Statistics
Matches: 150, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 150 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (54 bp):
GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAG
Found at i:36068432 original size:81 final size:81
Alignment explanation
Indices: 36068176--36068414 Score: 338
Period size: 81 Copynumber: 3.0 Consensus size: 81
36068166 ACGGTATTTT
* * *
36068176 GGTAATTTTGTAAA-CCAGTGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTG
1 GGTAATTCTGTAAATCAAG-GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
*
36068240 TAAATTGAGGGTAAAAT-
65 TAAATCGAGGGT-AAATC
* * * *
36068257 GGTAATTCTATTAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTAT
1 GGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTAT
*
36068322 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAATC
* * *
36068338 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTAC
1 GGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTAT
36068403 AAATCGAGGGTA
66 AAATCGAGGGTA
36068415 TTTCAATAAT
Statistics
Matches: 140, Mismatches: 16, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
80 3 0.02
81 134 0.96
82 3 0.02
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (81 bp):
GGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTAT
AAATCGAGGGTAAATC
Found at i:36073043 original size:30 final size:30
Alignment explanation
Indices: 36073009--36073069 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36072999 TCCTTAACTC
36073009 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
36073039 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
36073069 A
1 A
36073070 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:36075315 original size:31 final size:31
Alignment explanation
Indices: 36075277--36075355 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
36075267 CTCAACATAT
36075277 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
* *
36075308 ACTGGGCCGAAACCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
36075339 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
36075356 ATTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCAAATC
Found at i:36075438 original size:42 final size:42
Alignment explanation
Indices: 36075379--36075470 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
36075369 TGGCCCATAG
* *
36075379 GCCCATCTCAATAACACATGAAATATCAATGAATGTAAGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTAAGCAA
*
36075421 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTAAGCAA
36075463 GCCCATTT
1 GCCCATTT
36075471 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.41, C:0.23, G:0.12, T:0.24
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTAAGCAA
Found at i:36075644 original size:25 final size:25
Alignment explanation
Indices: 36075615--36075685 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
36075605 CCTCTTTAAT
**
36075615 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCAATA
36075640 AACTGGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCAATA
36075665 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTT
36075686 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
25 33 0.77
26 10 0.23
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAATA
Found at i:36075760 original size:20 final size:20
Alignment explanation
Indices: 36075735--36075809 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
36075725 TTATGAATTC
*
36075735 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
36075755 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
36075775 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
36075795 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
36075810 TCCCACGTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:36075766 original size:11 final size:11
Alignment explanation
Indices: 36075735--36075790 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
36075725 TTATGAATTC
36075735 ATCATGTGCAT
1 ATCATGTGCAT
* *
36075746 TTCA--TACAT
1 ATCATGTGCAT
36075755 ATCATGTGCAT
1 ATCATGTGCAT
*
36075766 ATCA--TACAT
1 ATCATGTGCAT
36075775 ATCATGTGCAT
1 ATCATGTGCAT
36075786 ATCAT
1 ATCAT
36075791 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:36075807 original size:9 final size:10
Alignment explanation
Indices: 36075752--36075808 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
36075742 GCATTTCATA
36075752 CATATCATGT
1 CATATCATGT
*
36075762 GCATATCAT-A
1 -CATATCATGT
36075772 CATATCATGT
1 CATATCATGT
*
36075782 GCATATCATAT
1 -CATATCATGT
36075793 CA-ATCATGT
1 CATATCATGT
36075802 -ATATCAT
1 CATATCAT
36075809 ATCCCACGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (10 bp):
CATATCATGT
Found at i:36076537 original size:27 final size:27
Alignment explanation
Indices: 36076507--36076608 Score: 73
Period size: 27 Copynumber: 3.8 Consensus size: 27
36076497 GGGCATATTC
36076507 GTCATTTTACCATACAAGGGTATTATG
1 GTCATTTTACCATACAAGGGTATTATG
* * * *
36076534 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAAGGG-TATTATG
* * * * *
36076561 GTCTTTTTACC-TATTAGGGGTATTTTA
1 GTCATTTTACCATA-CAAGGGTATTATG
* *
36076588 GTCATTTCATCATACAAGGGT
1 GTCATTTTACCATACAAGGGT
36076609 GTTTTGGTAA
Statistics
Matches: 56, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
26 3 0.05
27 50 0.89
28 3 0.05
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGTATTATG
Found at i:36076738 original size:27 final size:27
Alignment explanation
Indices: 36076688--36076892 Score: 191
Period size: 27 Copynumber: 7.7 Consensus size: 27
36076678 AGAAAGTCAA
* * ** *
36076688 GGGTATTTTTGTAAATTTGTAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
36076715 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * * *
36076741 AGGTATTTCGATAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
36076768 TGGTATTTTGGTAACTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
36076795 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
** * *
36076822 GGGTATTTCAGCAATTTTACAGACTA-
1 GGGTATTTTGGTAATTTTACAAACTAG
** *
36076848 GGGTATTTTGGTAATTTTACTGA-TCG
1 GGGTATTTTGGTAATTTTACAAACTAG
36076874 AGGGTATTTTGGTAATTTT
1 -GGGTATTTTGGTAATTTT
36076893 GTAAACCAAG
Statistics
Matches: 145, Mismatches: 30, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
25 1 0.01
26 40 0.28
27 104 0.72
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:36076799 original size:80 final size:79
Alignment explanation
Indices: 36076687--36076892 Score: 218
Period size: 80 Copynumber: 2.6 Consensus size: 79
36076677 TAGAAAGTCA
* ** **
36076687 AGGGTATTTTTGTAAATTTGTAAATTAGGGGTATTTTGGTAATTTTACAAA-TTGAGGTATTTC-
1 AGGGTATTTTGGTAAATTTACAAA-TAGGGGTATTTTGGTAATTTTACAAACCAGAGGTATTTCA
*
36076750 GATAATTTCACAAACC
65 G-CAATTTCACAAACC
* *
36076766 AGTGGTATTTTGGTAACTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTC
1 AG-GGTATTTTGGTAAATTTACAAA-TAGGGGTATTTTGGTAATTTTACAAACCAGAGGTATTTC
* * *
36076831 AGCAATTTTACAGACT
64 AGCAATTTCACAAACC
* ** *
36076847 AGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTT
1 AGGGTATTTTGGTAAATTTACAAATAG-GGGTATTTTGGTAATTTT
36076893 GTAAACCAAG
Statistics
Matches: 107, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
79 4 0.04
80 81 0.76
81 21 0.20
82 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (79 bp):
AGGGTATTTTGGTAAATTTACAAATAGGGGTATTTTGGTAATTTTACAAACCAGAGGTATTTCAG
CAATTTCACAAACC
Found at i:36076820 original size:54 final size:54
Alignment explanation
Indices: 36076713--36076892 Score: 204
Period size: 53 Copynumber: 3.4 Consensus size: 54
36076703 TTTGTAAATT
* * * * *
36076713 AGGGGTATTTTGGTAATTTTACAAA-TTGAGGTATTTCGATAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACC
* *
36076766 AGTGGTATTTTGGTAACTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACC
** * * ** *
36076820 AGGGGTATTTCAGCAATTTTACAGACTA-GGGTATTTTGGTAATTTTACTGATC
1 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACC
36076873 -GAGGGTATTTTGGTAATTTT
1 AG-GGGTATTTTGGTAATTTT
36076893 GTAAACCAAG
Statistics
Matches: 106, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
52 1 0.01
53 60 0.57
54 45 0.42
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACC
Found at i:36076904 original size:27 final size:27
Alignment explanation
Indices: 36076602--36076906 Score: 186
Period size: 27 Copynumber: 11.3 Consensus size: 27
36076592 TTTCATCATA
* * *
36076602 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
** ** *
36076629 CAAGGGTATTTCAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
36076656 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-C
* * ** *
36076685 CAAGGGTATTTTTGTAAATTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
36076712 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** * * *
36076739 TGA-GGTATTTCGATAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
36076765 C-AGTGGTATTTTGGTAACTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAC
* *
36076792 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** * *
36076819 CAGGGGTATTTCAGCAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** *
36076845 CTAGGGTATTTTGGTAATTTTACTGAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
36076872 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
36076899 CAAGGGTA
1 CAAGGGTA
36076907 AAACAGTAAT
Statistics
Matches: 214, Mismatches: 56, Indels: 16
0.75 0.20 0.06
Matches are distributed among these distances:
25 1 0.00
26 39 0.18
27 145 0.68
28 15 0.07
29 14 0.07
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:36076915 original size:27 final size:27
Alignment explanation
Indices: 36076901--36077121 Score: 291
Period size: 27 Copynumber: 8.2 Consensus size: 27
36076891 TTGTAAACCA
* *
36076901 AGGGTAAAACAGTAATTCTATAAATCA
1 AGGGTAAAACGGTAATTCTATAAATCG
* *
36076928 AGGGTAAAATGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* *
36076955 AGGCT-AAATGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
*
36076981 AGAGTAAAACGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* *
36077008 AGGGTAAAATGGTAATTCTATAAATTG
1 AGGGTAAAACGGTAATTCTATAAATCG
* **
36077035 AGGGTAAAACGGTAATTCTGTAAATAA
1 AGGGTAAAACGGTAATTCTATAAATCG
*
36077062 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* * *
36077089 AGGGTAAAATGGTAATTTTACAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
36077116 AGGGTA
1 AGGGTA
36077122 TTTCAGTAAT
Statistics
Matches: 171, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 23 0.13
27 148 0.87
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTATAAATCG
Found at i:36076969 original size:107 final size:107
Alignment explanation
Indices: 36076884--36077105 Score: 291
Period size: 107 Copynumber: 2.1 Consensus size: 107
36076874 AGGGTATTTT
* * *
36076884 GGTAATTTTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTGT
1 GGTAATTCTATAAACCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGT
36076949 AAATCGAGGCTAAATGGTAATTCTATAAATCGAGAGTAAAAC
66 AAATCGAGGCTAAATGGTAATTCTATAAATCGAGAGTAAAAC
* * ** **
36076991 GGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGT
1 GGTAATTCTATAAACCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGT
** * * * * *
36077056 AAATAAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAT
66 AAATCGAGGCT-AAATGGTAATTCTATAAATCGAGAGTAAAAC
36077099 GGTAATT
1 GGTAATT
36077106 TTACAAATCG
Statistics
Matches: 98, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
107 64 0.65
108 34 0.35
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.29
Consensus pattern (107 bp):
GGTAATTCTATAAACCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGT
AAATCGAGGCTAAATGGTAATTCTATAAATCGAGAGTAAAAC
Found at i:36077086 original size:81 final size:81
Alignment explanation
Indices: 36076884--36077121 Score: 334
Period size: 81 Copynumber: 3.0 Consensus size: 81
36076874 AGGGTATTTT
* * * * *
36076884 GGTAATTTTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTGT
1 GGTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTAT
* *
36076949 AAATCGAGGCT-AAAT
66 AAATCGAGGGTAAAAC
* * *
36076964 GGTAATTCTATAAATCGAGAGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTAT
1 GGTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTAT
*
36077029 AAATTGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * * *
36077045 GGTAATTCTGTAAATAAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAC
1 GGTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTAT
36077110 AAATCGAGGGTA
66 AAATCGAGGGTA
36077122 TTTCAGTAAT
Statistics
Matches: 138, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 66 0.48
81 72 0.52
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.29
Consensus pattern (81 bp):
GGTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTAT
AAATCGAGGGTAAAAC
Found at i:36077139 original size:81 final size:81
Alignment explanation
Indices: 36076856--36077121 Score: 318
Period size: 81 Copynumber: 3.3 Consensus size: 81
36076846 TAGGGTATTT
* ** ** * * ** *
36076856 TGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTAAAACAGTAATTCTA
1 TGGTAATTCTACAAATCGAGGGTAAATCGGTAATTCTGTAAATAAAGGGTAAAACGGTAATTCTA
*
36076921 TAAATCAAGGGTAAAA
66 TAAATCGAGGGTAAAA
** * * ** *
36076937 TGGTAATTCTGTAAATCGAGGCTAAAT-GGTAATTCTATAAATCGAGAGTAAAACGGTAATTCTA
1 TGGTAATTCTACAAATCGAGGGTAAATCGGTAATTCTGTAAATAAAGGGTAAAACGGTAATTCTA
36077001 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * *
36077017 TGGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGTAAATAAAGGGTAAAACGGTAATTCTG
1 TGGTAATTCTACAAATCGAGGGTAAATCGGTAATTCTGTAAATAAAGGGTAAAACGGTAATTCTA
36077082 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
*
36077098 TGGTAATTTTACAAATCGAGGGTA
1 TGGTAATTCTACAAATCGAGGGTA
36077122 TTTCAGTAAT
Statistics
Matches: 157, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
80 69 0.44
81 88 0.56
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (81 bp):
TGGTAATTCTACAAATCGAGGGTAAATCGGTAATTCTGTAAATAAAGGGTAAAACGGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:36080144 original size:9 final size:9
Alignment explanation
Indices: 36080132--36080188 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
36080122 TTTGATAAAC
36080132 ATGATATGT
1 ATGATATGT
*
36080141 ATGATATGCAC
1 ATGATATG--T
*
36080152 ATGACATGT
1 ATGATATGT
*
36080161 ATGATATGCAC
1 ATGATATG--T
36080172 ATGATATGT
1 ATGATATGT
36080181 ATGATATG
1 ATGATATG
36080189 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:36080155 original size:20 final size:20
Alignment explanation
Indices: 36080130--36080192 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
36080120 ATTTTGATAA
36080130 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
36080150 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
36080170 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
36080190 ACA
1 ACA
36080193 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:36080325 original size:23 final size:24
Alignment explanation
Indices: 36080246--36080389 Score: 222
Period size: 24 Copynumber: 6.0 Consensus size: 24
36080236 GAGGAAGTGC
36080246 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36080270 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36080294 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36080318 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36080341 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
36080366 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
36080390 ATGATAAAGC
Statistics
Matches: 113, Mismatches: 1, Indels: 11
0.90 0.01 0.09
Matches are distributed among these distances:
23 29 0.26
24 54 0.48
25 21 0.19
26 9 0.08
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:36084036 original size:16 final size:16
Alignment explanation
Indices: 36084015--36084045 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36084005 CTAGATCGGC
36084015 AAAAGTCAAAAAGCCG
1 AAAAGTCAAAAAGCCG
*
36084031 AAAAGTCGAAAAGCC
1 AAAAGTCAAAAAGCC
36084046 AGCATTTGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.19, G:0.19, T:0.06
Consensus pattern (16 bp):
AAAAGTCAAAAAGCCG
Found at i:36084348 original size:26 final size:26
Alignment explanation
Indices: 36084292--36084354 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
36084282 TTTATTAAAC
* *
36084292 TACCCCTAAGTATGAAAATTACCATTT
1 TACCCCT-AGTATGAAAATGACCATTA
*
36084319 TACCCCTAG-ATGCAAAATGACCGTTA
1 TACCCCTAGTATG-AAAATGACCATTA
36084345 TACCCCTAGT
1 TACCCCTAGT
36084355 GTTAATTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 3 0.10
26 21 0.68
27 7 0.23
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (26 bp):
TACCCCTAGTATGAAAATGACCATTA
Found at i:36088515 original size:20 final size:20
Alignment explanation
Indices: 36088490--36088537 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
36088480 TGTAGGACAT
36088490 GGGCGTGTCCTCTAGCACAC
1 GGGCGTGTCCTCTAGCACAC
36088510 GGGCGTGTCCTCTAGCACAC
1 GGGCGTGTCCTCTAGCACAC
*
36088530 AGGCGTGT
1 GGGCGTGT
36088538 GCAATGCCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.15, C:0.31, G:0.33, T:0.21
Consensus pattern (20 bp):
GGGCGTGTCCTCTAGCACAC
Found at i:36097498 original size:15 final size:15
Alignment explanation
Indices: 36097478--36097509 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
36097468 ATAGGTGTTA
36097478 ATATGTGAAATGGGT
1 ATATGTGAAATGGGT
36097493 ATATGTGAAATGGGT
1 ATATGTGAAATGGGT
36097508 AT
1 AT
36097510 TAAATGTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (15 bp):
ATATGTGAAATGGGT
Found at i:36103685 original size:60 final size:60
Alignment explanation
Indices: 36103563--36103733 Score: 170
Period size: 60 Copynumber: 2.8 Consensus size: 60
36103553 TCAAGCTTCA
* * *
36103563 TGGGCC-TAAGCCCTATTCAGAAATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATTAATC
1 TGGGCCAT-AGCCCTATT-ACAAATCA-AGATATACTGGGCC-TAGCCCATATCAATATCAATC
* *
36103625 TGGGCCATAGCCCT-TTACAATATCAA-AGTATACTGGGCCTAGCCCATGTCAGTATCAATC
1 TGGGCCATAGCCCTATTACAA-ATCAAGA-TATACTGGGCCTAGCCCATATCAATATCAATC
* * * * *
36103685 TGGGTCGTAGCCCTATTACAAGTCAAGATATATTGGGCCTTGCCCATAT
1 TGGGCCATAGCCCTATTACAAATCAAGATATACTGGGCCTAGCCCATAT
36103734 TAACACAGTT
Statistics
Matches: 92, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
60 58 0.63
61 21 0.23
62 12 0.13
63 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (60 bp):
TGGGCCATAGCCCTATTACAAATCAAGATATACTGGGCCTAGCCCATATCAATATCAATC
Found at i:36106516 original size:47 final size:47
Alignment explanation
Indices: 36106464--36107382 Score: 1721
Period size: 47 Copynumber: 19.6 Consensus size: 47
36106454 GATAATTGTG
* *
36106464 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36106511 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36106558 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36106605 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36106652 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36106699 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36106746 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36106793 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36106840 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36106887 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36106934 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36106981 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36107028 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36107075 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36107122 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36107169 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36107216 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36107263 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
36107310 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36107357 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
36107383 TCCCGAAGGG
Statistics
Matches: 856, Mismatches: 16, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 856 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36110462 original size:33 final size:33
Alignment explanation
Indices: 36110418--36110483 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
36110408 TTAATCTATT
*
36110418 CCTGCTTAAGCCTCGGTTACTTGTGAAATAAAA
1 CCTGCTGAAGCCTCGGTTACTTGTGAAATAAAA
36110451 CCTGCTGAAGCCTCGGTTACTTGTGAAATAAAA
1 CCTGCTGAAGCCTCGGTTACTTGTGAAATAAAA
36110484 AGGAAATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (33 bp):
CCTGCTGAAGCCTCGGTTACTTGTGAAATAAAA
Found at i:36111507 original size:14 final size:13
Alignment explanation
Indices: 36111487--36111518 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
36111477 AATATTTGAC
36111487 TTGTTCTTAATTA
1 TTGTTCTTAATTA
36111500 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
36111514 TTGTT
1 TTGTT
36111519 TTGATATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:36116409 original size:27 final size:27
Alignment explanation
Indices: 36116379--36116525 Score: 141
Period size: 27 Copynumber: 5.4 Consensus size: 27
36116369 ATTGTACAGG
* *
36116379 ACTAAGTGCGCGATTTGACTATGTTGC
1 ACTAAGTGTGCGAATTGACTATGTTGC
* * *
36116406 ACTAAGTGTGCGAAATGAATATGATGC
1 ACTAAGTGTGCGAATTGACTATGTTGC
* **
36116433 ACTAAGTGTGCGAATTGACCATGCGGC
1 ACTAAGTGTGCGAATTGACTATGTTGC
* * * *
36116460 ACTAAGTGTGCGATTTGATTACGTAGC
1 ACTAAGTGTGCGAATTGACTATGTTGC
* * * *
36116487 ACTAAGTGTGCGAGTTGATTATATAGC
1 ACTAAGTGTGCGAATTGACTATGTTGC
*
36116514 ACTGAGTGTGCG
1 ACTAAGTGTGCG
36116526 GACTCAATAT
Statistics
Matches: 100, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ACTAAGTGTGCGAATTGACTATGTTGC
Found at i:36129163 original size:192 final size:193
Alignment explanation
Indices: 36128827--36129210 Score: 655
Period size: 192 Copynumber: 2.0 Consensus size: 193
36128817 AGGGACTTAT
* * *
36128827 AGTGCTGTTTTAGTGCCGACATCCCAAAAGTAATAAGGTGTATGACCTAACTCGTAATTTTTAAA
1 AGTGCTGTTTTAGTGCCGACATCCCAAAAGTAATAAGGTGTATAACATAACCCGTAATTTTTAAA
*
36128892 AACGAACATGGAAACCTTGAAATTCTGTGAAAATCAAAATGAGGCTGATGACGCTACATGGTCAT
66 AACGAACATGGAAACCTTAAAATTCTGTGAAAATCAAAATGAGGCTGATGACGCTACATGGTCAT
*
36128957 GTGTCGGGCCGTGTGAGAAACATAGACGTATAAGCCACATGGTTTGGTTGAGGTAGGACTTGG
131 GTGTCGGGCCGTGTGAGAAACATAGACGTATAAGCCACATGGTCTGGTTGAGGTAGGACTTGG
* *
36129020 AGTGTTGTTTTAGTGCCGACATCCCAAAAGTAATAAGTTGTATAACATAACCCGTAA-TTTTAAA
1 AGTGCTGTTTTAGTGCCGACATCCCAAAAGTAATAAGGTGTATAACATAACCCGTAATTTTTAAA
*
36129084 AACGAACATGGAAACCTTAAAATTCTGTGAAAATCAAAATGAGGCTGATGACGCTACATGGTCGT
66 AACGAACATGGAAACCTTAAAATTCTGTGAAAATCAAAATGAGGCTGATGACGCTACATGGTCAT
* *
36129149 GTGT-GGGCCCGTGTGAGAAACATAGATGTATAAGCCACATGGTCTGGTTGAGGTAGGGCTTG
131 GTGTCGGG-CCGTGTGAGAAACATAGACGTATAAGCCACATGGTCTGGTTGAGGTAGGACTTG
36129211 TGGGCTACAC
Statistics
Matches: 180, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
191 3 0.02
192 125 0.69
193 52 0.29
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (193 bp):
AGTGCTGTTTTAGTGCCGACATCCCAAAAGTAATAAGGTGTATAACATAACCCGTAATTTTTAAA
AACGAACATGGAAACCTTAAAATTCTGTGAAAATCAAAATGAGGCTGATGACGCTACATGGTCAT
GTGTCGGGCCGTGTGAGAAACATAGACGTATAAGCCACATGGTCTGGTTGAGGTAGGACTTGG
Found at i:36133165 original size:30 final size:30
Alignment explanation
Indices: 36133131--36133191 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
36133121 GTGTTTTGTT
36133131 CCTTGCTGAACCAATTTCTCGGCTCTTTCC
1 CCTTGCTGAACCAATTTCTCGGCTCTTTCC
* * *
36133161 CCTTGCTGAACTAATTTCTTGGCTGTTTCC
1 CCTTGCTGAACCAATTTCTCGGCTCTTTCC
36133191 C
1 C
36133192 TCTTCTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.13, C:0.33, G:0.15, T:0.39
Consensus pattern (30 bp):
CCTTGCTGAACCAATTTCTCGGCTCTTTCC
Found at i:36138690 original size:3 final size:3
Alignment explanation
Indices: 36138682--36138707 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
36138672 TTGTTTGATT
36138682 CAC CAC CAC CAC CAC CAC CAC CAC CA
1 CAC CAC CAC CAC CAC CAC CAC CAC CA
36138708 TCATCAACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.65, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:36140652 original size:18 final size:18
Alignment explanation
Indices: 36140629--36140680 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
36140619 TGTTTCCATC
* *
36140629 AATGTGAACATTATTTGA
1 AATGTGAACATCATTTAA
36140647 AATGTGAACATCATTTAA
1 AATGTGAACATCATTTAA
36140665 AATGTGAACATCATTT
1 AATGTGAACATCATTT
36140681 CTCGTATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (18 bp):
AATGTGAACATCATTTAA
Found at i:36144370 original size:51 final size:50
Alignment explanation
Indices: 36144254--36144448 Score: 219
Period size: 50 Copynumber: 3.7 Consensus size: 50
36144244 TCATTCAATA
* *
36144254 CACGTAGTAGCCTCCACATAGTACTACACACGTGATCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGATT
*
36144304 CACGTAGTAGCCTTCACATAGTACTACACATGTGATCAAGTTTTTACGATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAG-TTTTACGATT
* ***
36144355 CACGTAGTAGCCTTCACATAGTTCACTTAGTACTACACATGTGACCATCATTTATCGATT
1 CACGTAGTAGCCTTCACATAG-T-AC----TAC-ACAC--GTGATCAAGTTTTA-CGATT
*
36144415 CACGTAGTAGCCTTCACACAGTACTACACACGTG
1 CACGTAGTAGCCTTCACATAGTACTACACACGTG
36144449 TTCATCGATA
Statistics
Matches: 125, Mismatches: 9, Indels: 21
0.81 0.06 0.14
Matches are distributed among these distances:
50 38 0.30
51 33 0.26
52 1 0.01
53 6 0.05
54 3 0.02
57 3 0.02
58 5 0.04
59 5 0.04
60 31 0.25
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (50 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGATT
Found at i:36144380 original size:60 final size:60
Alignment explanation
Indices: 36144316--36144432 Score: 175
Period size: 60 Copynumber: 1.9 Consensus size: 60
36144306 CGTAGTAGCC
*
36144316 TTCACATAGTACTACACATGTGATCAAGT-TTTTA-CGATTCACGTAGTAGCCTTCACATAG
1 TTCACATAGTACTACACATGTGA-CAA-TCATTTATCGATTCACGTAGTAGCCTTCACATAG
* *
36144376 TTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCCTTCACA
1 TTCACATAGTACTACACATGTGACAATCATTTATCGATTCACGTAGTAGCCTTCACA
36144433 CAGTACTACA
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
58 1 0.02
59 6 0.12
60 45 0.87
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (60 bp):
TTCACATAGTACTACACATGTGACAATCATTTATCGATTCACGTAGTAGCCTTCACATAG
Found at i:36147672 original size:21 final size:22
Alignment explanation
Indices: 36147635--36147681 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 22
36147625 CAAAAATATA
36147635 TTAAATATATATTTTT-A-TGT
1 TTAAATATATATTTTTAACTGT
36147655 TTAAA-ATATATTAGTTTAACTGT
1 TTAAATATATATT--TTTAACTGT
36147678 TTAA
1 TTAA
36147682 GTTTTTTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 7 0.30
20 5 0.22
21 3 0.13
22 1 0.04
23 7 0.30
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.53
Consensus pattern (22 bp):
TTAAATATATATTTTTAACTGT
Found at i:36147734 original size:20 final size:20
Alignment explanation
Indices: 36147709--36147755 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
36147699 AATATATATA
36147709 TTTA-TTTTTATGTTTAAGTT
1 TTTATTTTTTA-GTTTAAGTT
*
36147729 TTTATTTTTTAGTTTTAGTT
1 TTTATTTTTTAGTTTAAGTT
*
36147749 TTCATTT
1 TTTATTT
36147756 CCCAATCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.17, C:0.02, G:0.09, T:0.72
Consensus pattern (20 bp):
TTTATTTTTTAGTTTAAGTT
Found at i:36152368 original size:9 final size:9
Alignment explanation
Indices: 36152350--36152410 Score: 86
Period size: 9 Copynumber: 6.8 Consensus size: 9
36152340 GGTTGCAAAA
36152350 AGGACGATG
1 AGGACGATG
*
36152359 AGGACAATG
1 AGGACGATG
36152368 AGGACGATG
1 AGGACGATG
36152377 AGGACGATG
1 AGGACGATG
36152386 AGGACGATG
1 AGGACGATG
* *
36152395 ACGATGATG
1 AGGACGATG
*
36152404 ACGACGA
1 AGGACGA
36152411 GGTTTCTTCA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 47 1.00
ACGTcount: A:0.36, C:0.13, G:0.39, T:0.11
Consensus pattern (9 bp):
AGGACGATG
Found at i:36152915 original size:9 final size:9
Alignment explanation
Indices: 36152901--36152953 Score: 92
Period size: 9 Copynumber: 6.1 Consensus size: 9
36152891 TTTTGGTACA
36152901 ACAATTAAT
1 ACAATTAAT
36152910 ACAATTAAT
1 ACAATTAAT
36152919 ACAATTAAT
1 ACAATTAAT
36152928 ACAATT-A-
1 ACAATTAAT
36152935 ACAATTAAT
1 ACAATTAAT
36152944 ACAATTAAT
1 ACAATTAAT
36152953 A
1 A
36152954 ATTTGATAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
7 6 0.14
8 2 0.05
9 34 0.81
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:36152942 original size:25 final size:25
Alignment explanation
Indices: 36152901--36152953 Score: 56
Period size: 25 Copynumber: 2.0 Consensus size: 25
36152891 TTTTGGTACA
36152901 ACAATTAATACAATTAATACAATTAAT
1 ACAATTAATACAATT-A-ACAATTAAT
36152928 ACAATT-A-ACAATTAATACAATTAAT
1 ACAATTAATACAATT-A-ACAATTAAT
36152953 A
1 A
36152954 ATTTGATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 19 0.73
26 1 0.04
27 6 0.23
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (25 bp):
ACAATTAATACAATTAACAATTAAT
Found at i:36153006 original size:84 final size:84
Alignment explanation
Indices: 36152910--36153190 Score: 539
Period size: 84 Copynumber: 3.4 Consensus size: 84
36152900 AACAATTAAT
36152910 ACAATTAATACAATTAATACAATTAACAATTAATACAATTAATAATTTGATAATTTTATTAATCA
1 ACAATTAATACAATTAATACAATTAACAATTAATACAATTAATAATTTGATAATTTTATTAATCA
36152975 AATGTTAGATTTTGTTACA
66 AATGTTAGATTTTGTTACA
36152994 ACAATTAATACAATTAATACAATTAACAATTAATACAATTAATAATTTGATAATTTTATTAATCA
1 ACAATTAATACAATTAATACAATTAACAATTAATACAATTAATAATTTGATAATTTTATTAATCA
36153059 AATGTTAGATTTTGTTACA
66 AATGTTAGATTTTGTTACA
36153078 ACAATTAATACAATTAATACAATTAACAATTAATACAATTAATAATTTGATAATTTTATTAATCA
1 ACAATTAATACAATTAATACAATTAACAATTAATACAATTAATAATTTGATAATTTTATTAATCA
36153143 AATGTTAGATTTTGTTACA
66 AATGTTAGATTTTGTTACA
*
36153162 ACAATTAATACAATT-A-ACAATTAATAATT
1 ACAATTAATACAATTAATACAATTAACAATT
36153191 TGATAATTTT
Statistics
Matches: 196, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
82 12 0.06
83 1 0.01
84 183 0.93
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (84 bp):
ACAATTAATACAATTAATACAATTAACAATTAATACAATTAATAATTTGATAATTTTATTAATCA
AATGTTAGATTTTGTTACA
Found at i:36153008 original size:9 final size:9
Alignment explanation
Indices: 36152994--36153037 Score: 74
Period size: 9 Copynumber: 5.1 Consensus size: 9
36152984 TTTTGTTACA
36152994 ACAATTAAT
1 ACAATTAAT
36153003 ACAATTAAT
1 ACAATTAAT
36153012 ACAATT-A-
1 ACAATTAAT
36153019 ACAATTAAT
1 ACAATTAAT
36153028 ACAATTAAT
1 ACAATTAAT
36153037 A
1 A
36153038 ATTTGATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 6 0.18
8 2 0.06
9 25 0.76
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:36153024 original size:16 final size:16
Alignment explanation
Indices: 36153003--36153040 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
36152993 AACAATTAAT
36153003 ACAATTAATACAATTA
1 ACAATTAATACAATTA
36153019 ACAATTAATACAATTA
1 ACAATTAATACAATTA
*
36153035 ATAATT
1 ACAATT
36153041 TGATAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (16 bp):
ACAATTAATACAATTA
Found at i:36153092 original size:9 final size:9
Alignment explanation
Indices: 36153078--36153121 Score: 74
Period size: 9 Copynumber: 5.1 Consensus size: 9
36153068 TTTTGTTACA
36153078 ACAATTAAT
1 ACAATTAAT
36153087 ACAATTAAT
1 ACAATTAAT
36153096 ACAATT-A-
1 ACAATTAAT
36153103 ACAATTAAT
1 ACAATTAAT
36153112 ACAATTAAT
1 ACAATTAAT
36153121 A
1 A
36153122 ATTTGATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 6 0.18
8 2 0.06
9 25 0.76
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:36153108 original size:16 final size:16
Alignment explanation
Indices: 36153087--36153124 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
36153077 AACAATTAAT
36153087 ACAATTAATACAATTA
1 ACAATTAATACAATTA
36153103 ACAATTAATACAATTA
1 ACAATTAATACAATTA
*
36153119 ATAATT
1 ACAATT
36153125 TGATAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (16 bp):
ACAATTAATACAATTA
Found at i:36153215 original size:16 final size:16
Alignment explanation
Indices: 36153194--36153235 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
36153184 AATAATTTGA
*
36153194 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
36153210 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
36153226 TAGTTTTAAT
1 TAATTTTAAT
36153236 TTTATCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:36156050 original size:14 final size:14
Alignment explanation
Indices: 36156031--36156060 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
36156021 GGAGTTACAA
36156031 ACTAACTCAAAGAT
1 ACTAACTCAAAGAT
36156045 ACTAACTCAAAGAT
1 ACTAACTCAAAGAT
36156059 AC
1 AC
36156061 GTTCATTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.23, G:0.07, T:0.20
Consensus pattern (14 bp):
ACTAACTCAAAGAT
Found at i:36159756 original size:54 final size:53
Alignment explanation
Indices: 36159695--36159876 Score: 143
Period size: 54 Copynumber: 3.2 Consensus size: 53
36159685 TAAGTTTGTG
36159695 AAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATA
1 AAATTATTAATTGATAAATTGTATTAAT-GTTAGTAAAATTATCAAATTATATA
* *** ** * * * * *
36159749 AAATTATTAATTGTTAGTACCAGTCAAAACAT-TT-TTCCAAATCTAACATTATGTGAATGTA
1 AAATTATTAATTGATA--AATTGT-ATTA-ATGTTAGT-AAAAT-TATCA-AAT-T--ATATA
36159810 AAATTATTAATTGATAAATTGTATTAATGATTAGTAAAATTATCAAATTATATA
1 AAATTATTAATTGATAAATTGTATTAATG-TTAGTAAAATTATCAAATTATATA
36159864 AAATTATTAATTG
1 AAATTATTAATTG
36159877 TTAGTACCAG
Statistics
Matches: 93, Mismatches: 22, Indels: 26
0.66 0.16 0.18
Matches are distributed among these distances:
54 32 0.34
55 1 0.01
56 10 0.11
57 10 0.11
58 10 0.11
59 10 0.11
60 1 0.01
61 19 0.20
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (53 bp):
AAATTATTAATTGATAAATTGTATTAATGTTAGTAAAATTATCAAATTATATA
Found at i:36159875 original size:17 final size:17
Alignment explanation
Indices: 36159808--36159875 Score: 57
Period size: 17 Copynumber: 3.8 Consensus size: 17
36159798 TATGTGAATG
*
36159808 TAAAATTATTAATT-GA
1 TAAAATTATTAATTATA
* *
36159824 TAAATTGTATTAATGATTA
1 TAAAAT-TATTAATTA-TA
*
36159843 GTAAAATTATCAAATTATA
1 -TAAAATTAT-TAATTATA
36159862 TAAAATTATTAATT
1 TAAAATTATTAATT
36159876 GTTAGTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
16 5 0.12
17 11 0.28
18 9 0.22
19 6 0.15
20 9 0.22
ACGTcount: A:0.49, C:0.01, G:0.06, T:0.44
Consensus pattern (17 bp):
TAAAATTATTAATTATA
Found at i:36159938 original size:115 final size:116
Alignment explanation
Indices: 36159695--36160052 Score: 648
Period size: 115 Copynumber: 3.1 Consensus size: 116
36159685 TAAGTTTGTG
*
36159695 AAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAAT
1 AAATTATTAATTGATAAATTGTATTAATGATTAGTAAAATTATCAAATTATATAAAATTATTAAT
**
36159760 TGTTAGTACCA-GTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTA
66 TGTTAGTACCAGGAAAAAACATTTTTCCAAATCTAACATTATGTGAATGTA
36159810 AAATTATTAATTGATAAATTGTATTAATGATTAGTAAAATTATCAAATTATATAAAATTATTAAT
1 AAATTATTAATTGATAAATTGTATTAATGATTAGTAAAATTATCAAATTATATAAAATTATTAAT
*
36159875 TGTTAGTACCAGGAAAAAACATTTTTCCAAATCTAACATAATGTGAATGTA
66 TGTTAGTACCAGGAAAAAACATTTTTCCAAATCTAACATTATGTGAATGTA
*
36159926 AAATTATT-ATTGATAAATTGTATTAAGGATTAGTAAAATTATCAAATTATATAAAATTATTAAT
1 AAATTATTAATTGATAAATTGTATTAATGATTAGTAAAATTATCAAATTATATAAAATTATTAAT
*
36159990 TGTTAGTACCAGGAAAAAACATTTTTCCAAATCTAACATTATGTGAAAGTA
66 TGTTAGTACCAGGAAAAAACATTTTTCCAAATCTAACATTATGTGAATGTA
36160041 AAATTATTAATT
1 AAATTATTAATT
36160053 TAGTATGTGG
Statistics
Matches: 234, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
115 187 0.80
116 47 0.20
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (116 bp):
AAATTATTAATTGATAAATTGTATTAATGATTAGTAAAATTATCAAATTATATAAAATTATTAAT
TGTTAGTACCAGGAAAAAACATTTTTCCAAATCTAACATTATGTGAATGTA
Found at i:36160281 original size:18 final size:18
Alignment explanation
Indices: 36160258--36160297 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
36160248 GACTCGAAAA
*
36160258 AGGATACATATAAGGGTT
1 AGGATACATATAAGGGCT
36160276 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
36160294 AGGA
1 AGGA
36160298 AACGCACCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:36160958 original size:7 final size:7
Alignment explanation
Indices: 36160948--36160972 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36160938 TTATATACAT
36160948 AATACTA
1 AATACTA
36160955 AATACTA
1 AATACTA
36160962 AATACTA
1 AATACTA
36160969 AATA
1 AATA
36160973 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:36161180 original size:20 final size:20
Alignment explanation
Indices: 36161143--36161180 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36161133 TTTATTTTAA
*
36161143 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
36161163 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
36161181 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:36162186 original size:10 final size:11
Alignment explanation
Indices: 36162154--36162184 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
36162144 AAGAGAATTT
36162154 TTGA-AGGAAA
1 TTGAGAGGAAA
36162164 TTGAGAGGAAA
1 TTGAGAGGAAA
36162175 TTGAGAGGAA
1 TTGAGAGGAA
36162185 TTTTGAGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.20
11 16 0.80
ACGTcount: A:0.45, C:0.00, G:0.35, T:0.19
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:36167515 original size:50 final size:50
Alignment explanation
Indices: 36167460--36167599 Score: 181
Period size: 50 Copynumber: 2.8 Consensus size: 50
36167450 CATTGAAATT
* *
36167460 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCTTTAGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGAGCACCGAG
** * *
36167510 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGAGCACCGAG
** * * *
36167560 ATGAGAATTCCCATGTAAGACCATATTTGGGATATGGCAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCAT
36167600 TGGCAGTAAA
Statistics
Matches: 77, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 77 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGAGCACCGAG
Found at i:36167904 original size:20 final size:20
Alignment explanation
Indices: 36167866--36167904 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
36167856 TAAGCAAGCA
*
36167866 AGTAAGTAAACAAGTAAGAG
1 AGTAAGTAAACAAGAAAGAG
*
36167886 AGTAAGTAAAGAAGAAAGA
1 AGTAAGTAAACAAGAAAGA
36167905 AAATATATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.59, C:0.03, G:0.26, T:0.13
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGAG
Found at i:36171853 original size:3 final size:3
Alignment explanation
Indices: 36171845--36171922 Score: 115
Period size: 3 Copynumber: 26.3 Consensus size: 3
36171835 TATTAAGTCG
36171845 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
36171893 AAT AGT AAT AA- AACT AAT -TT AAT AAT AAT A
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT A
36171923 GAAATAACAA
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
2 3 0.04
3 63 0.93
4 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:36172290 original size:42 final size:43
Alignment explanation
Indices: 36172230--36172352 Score: 135
Period size: 44 Copynumber: 2.9 Consensus size: 43
36172220 ACCATCATGA
* ** *
36172230 TAATACTGTATTCGAATCATCAT-ACAATCTTTTTAGTAATTT
1 TAATATTGTATTTAAATCATCATGATAATCTTTTTAGTAATTT
* * *
36172272 TAATATTGTATTTAAATCACCATGGTAATTTTTTTTAGTAATTT
1 TAATATTGTATTTAAATCATCATGATAA-TCTTTTTAGTAATTT
*
36172316 TAAAATTGTA-TTAGAATCATCATGATAA-CTTTTTAGT
1 TAATATTGTATTTA-AATCATCATGATAATCTTTTTAGT
36172353 TCCGGGTTAA
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 27 0.40
43 5 0.07
44 35 0.52
ACGTcount: A:0.34, C:0.10, G:0.09, T:0.47
Consensus pattern (43 bp):
TAATATTGTATTTAAATCATCATGATAATCTTTTTAGTAATTT
Found at i:36173601 original size:16 final size:17
Alignment explanation
Indices: 36173577--36173608 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
36173567 CAAACATAGC
36173577 TATTCTTAAACAACAAT
1 TATTCTTAAACAACAAT
36173594 TATT-TTAAACAACAA
1 TATTCTTAAACAACAA
36173609 CTGTAATGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (17 bp):
TATTCTTAAACAACAAT
Found at i:36182972 original size:14 final size:15
Alignment explanation
Indices: 36182953--36182981 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36182943 CGAGTCCAAA
36182953 AATAACCC-AATTAC
1 AATAACCCAAATTAC
36182967 AATAACCCAAATTAC
1 AATAACCCAAATTAC
36182982 CAGCTCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.21
Consensus pattern (15 bp):
AATAACCCAAATTAC
Found at i:36186780 original size:40 final size:39
Alignment explanation
Indices: 36186704--36186780 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 39
36186694 GAATCAGTTT
**
36186704 GGGCCTTAGCCCATTCAGATACAGTCTCAGAAATACATTA
1 GGGCCTTAGCCCATTCAGATACAGAATCAG-AATACATTA
*
36186744 GGGCCTTGGCCCATATCAGATACAGAATGCAG-ATACA
1 GGGCCTTAGCCCAT-TCAGATACAGAAT-CAGAATACA
36186781 GTAAATCAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 18 0.56
41 11 0.34
42 3 0.09
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (39 bp):
GGGCCTTAGCCCATTCAGATACAGAATCAGAATACATTA
Found at i:36189880 original size:51 final size:52
Alignment explanation
Indices: 36189762--36189882 Score: 174
Period size: 52 Copynumber: 2.3 Consensus size: 52
36189752 ACTAATGACT
*
36189762 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTAGTCA
1 CAAGTGTGGTACTATGTGAAGGCCAATTTGTGAAGAAAGATAGCTTTAGTCA
* *
36189814 CAAGTGTGGTACTATGTGAAGGCCAATTTGTGAAG-AAGGTAGCTTT-GGCTA
1 CAAGTGTGGTACTATGTGAAGGCCAATTTGTGAAGAAAGATAGCTTTAGTC-A
* *
36189865 CAAGGGTGGTGCTATGTG
1 CAAGTGTGGTACTATGTG
36189883 CAAGCCACCG
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
50 2 0.03
51 27 0.43
52 34 0.54
ACGTcount: A:0.27, C:0.12, G:0.31, T:0.29
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCAATTTGTGAAGAAAGATAGCTTTAGTCA
Found at i:36195880 original size:5 final size:5
Alignment explanation
Indices: 36195860--36195895 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
36195850 ATTTGAGTTA
36195860 AATTT AAATATT AATTT AATTT AATTT AATTT AATT
1 AATTT -AAT-TT AATTT AATTT AATTT AATTT AATT
36195896 GTAAAATAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 21 0.72
6 6 0.21
7 2 0.07
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (5 bp):
AATTT
Found at i:36195883 original size:23 final size:20
Alignment explanation
Indices: 36195847--36195895 Score: 53
Period size: 23 Copynumber: 2.3 Consensus size: 20
36195837 TTTTTTGGGG
*
36195847 TTAATTTGAGTTAAATTTAAAT
1 TTAATTTAAGTT-AATTT-AAT
*
36195869 ATTAATTTAATTTAATTTAAT
1 -TTAATTTAAGTTAATTTAAT
36195890 TTAATT
1 TTAATT
36195896 GTAAAATAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 6 0.25
21 3 0.12
22 5 0.21
23 10 0.42
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (20 bp):
TTAATTTAAGTTAATTTAAT
Found at i:36195890 original size:15 final size:17
Alignment explanation
Indices: 36195860--36195900 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
36195850 ATTTGAGTTA
36195860 AATTTAAATATTAATTT
1 AATTTAAATATTAATTT
36195877 AATTT-AAT-TTAATTT
1 AATTTAAATATTAATTT
36195892 AATTGTAAA
1 AATT-TAAA
36195901 ATAAGGGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 11 0.50
16 4 0.18
17 7 0.32
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (17 bp):
AATTTAAATATTAATTT
Found at i:36197653 original size:10 final size:10
Alignment explanation
Indices: 36197638--36197665 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
36197628 TGCCACTTGT
36197638 TTGAGCATGA
1 TTGAGCATGA
36197648 TTGAGCATGA
1 TTGAGCATGA
36197658 TTGAGCAT
1 TTGAGCAT
36197666 ATGACATTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.29, T:0.32
Consensus pattern (10 bp):
TTGAGCATGA
Found at i:36198424 original size:26 final size:26
Alignment explanation
Indices: 36198394--36198448 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
36198384 AAATTGATTC
*
36198394 TCTAGTTCGTTTACATTACAAATTAG
1 TCTAGTTAGTTTACATTACAAATTAG
36198420 TCTAGTTAGTTTACATTACAAATTAG
1 TCTAGTTAGTTTACATTACAAATTAG
36198446 TCT
1 TCT
36198449 TGTAACTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.44
Consensus pattern (26 bp):
TCTAGTTAGTTTACATTACAAATTAG
Found at i:36204956 original size:37 final size:39
Alignment explanation
Indices: 36204915--36205012 Score: 104
Period size: 37 Copynumber: 2.6 Consensus size: 39
36204905 TAATATCATT
36204915 TTAATAGTTTAATATTAAATTTAAT-TT-AAT-ACTTATC
1 TTAATAGTTTAATATTAAATTTAATATTAAATGA-TTATC
*
36204952 TTAATAGTATT-TTATT-AATTTAATATTAAAATGATTATC
1 TTAATAGT-TTAATATTAAATTTAATATT-AAATGATTATC
36204991 TTAATA--TTAA-ATTAAATTTAAT
1 TTAATAGTTTAATATTAAATTTAAT
36205013 GTTTATCTAC
Statistics
Matches: 52, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
36 13 0.25
37 22 0.42
38 2 0.04
39 14 0.27
40 1 0.02
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (39 bp):
TTAATAGTTTAATATTAAATTTAATATTAAATGATTATC
Found at i:36205068 original size:12 final size:12
Alignment explanation
Indices: 36205051--36205075 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36205041 TTTTAATAAG
36205051 ATTTAATATTAA
1 ATTTAATATTAA
36205063 ATTTAATATTAA
1 ATTTAATATTAA
36205075 A
1 A
36205076 GTGATTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:36209381 original size:73 final size:75
Alignment explanation
Indices: 36209222--36209384 Score: 190
Period size: 73 Copynumber: 2.2 Consensus size: 75
36209212 ACTGTTAATA
* * * *
36209222 GTTAGTTGCGCTCATCTAAAAGCGCCGAAAAACTGTTAAGCAAACGATGTCGTTTTTTATTTAGC
1 GTTAGTGGCGCTTATCTAAAAACGCCGAAAAACTGTTAAGCAAACGATGTCGTTTTTTATATAGC
*
36209287 ATTTAGGGCT
66 ATTTAGGACT
* * * *
36209297 TTTAGTGGCGCTTGTCTAAAAACGCC-ACAAACTGTTAAG-AGAATGATGTCG-TTTTTATATAG
1 GTTAGTGGCGCTTATCTAAAAACGCCGAAAAACTGTTAAGCA-AACGATGTCGTTTTTTATATAG
*
36209359 CTTTTAGAGAC-
65 CATTTAG-GACT
36209370 GTTAGTGGCGCTTAT
1 GTTAGTGGCGCTTAT
36209385 TAGAAAATGT
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
73 30 0.41
74 23 0.31
75 21 0.28
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (75 bp):
GTTAGTGGCGCTTATCTAAAAACGCCGAAAAACTGTTAAGCAAACGATGTCGTTTTTTATATAGC
ATTTAGGACT
Found at i:36209792 original size:35 final size:35
Alignment explanation
Indices: 36209732--36209830 Score: 119
Period size: 35 Copynumber: 2.8 Consensus size: 35
36209722 TATGATTTAG
*
36209732 GGTTTAAGGGATAT-GGGTTAGGGGTTTATGGATTAT
1 GGTTTAAGGG-T-TGGGGTTAGGGGTTTATGGATTAA
* * *
36209768 GGTTTAAGGGTTGGGGTTAAGGGTTTAGGGGTTAA
1 GGTTTAAGGGTTGGGGTTAGGGGTTTATGGATTAA
* *
36209803 GGGTTAAGGGCTGGGGTTAGGGGTTTAT
1 GGTTTAAGGGTTGGGGTTAGGGGTTTAT
36209831 AGTTAATGTT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
34 1 0.02
35 43 0.80
36 10 0.19
ACGTcount: A:0.19, C:0.01, G:0.44, T:0.35
Consensus pattern (35 bp):
GGTTTAAGGGTTGGGGTTAGGGGTTTATGGATTAA
Found at i:36209809 original size:22 final size:22
Alignment explanation
Indices: 36209727--36209812 Score: 70
Period size: 21 Copynumber: 4.0 Consensus size: 22
36209717 TGTTCTATGA
* * *
36209727 TTTAGGGTTTAAGGGATATGGG
1 TTTAGGGGTTAAGGGTTAAGGG
* * *
36209749 -TTAGGGGTTTATGGATT-ATGG
1 TTTAGGGG-TTAAGGGTTAAGGG
* *
36209770 TTTAAGGGTT-GGGGTTAAGGG
1 TTTAGGGGTTAAGGGTTAAGGG
36209791 TTTAGGGGTTAAGGGTTAAGGG
1 TTTAGGGGTTAAGGGTTAAGGG
36209813 CTGGGGTTAG
Statistics
Matches: 48, Mismatches: 12, Indels: 8
0.71 0.18 0.12
Matches are distributed among these distances:
20 4 0.08
21 22 0.46
22 22 0.46
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.36
Consensus pattern (22 bp):
TTTAGGGGTTAAGGGTTAAGGG
Found at i:36209825 original size:7 final size:7
Alignment explanation
Indices: 36209746--36209827 Score: 51
Period size: 7 Copynumber: 11.7 Consensus size: 7
36209736 TAAGGGATAT
36209746 GGGTTAG
1 GGGTTAG
*
36209753 GGGTTTAT
1 GGG-TTAG
* *
36209761 GGATTAT
1 GGGTTAG
* *
36209768 GGTTTAA
1 GGGTTAG
36209775 GGGTT-G
1 GGGTTAG
36209781 GGGTTAAG
1 GGGTT-AG
*
36209789 GGTTTAG
1 GGGTTAG
*
36209796 GGGTTAA
1 GGGTTAG
*
36209803 GGGTTAA
1 GGGTTAG
*
36209810 GGGCT-G
1 GGGTTAG
36209816 GGGTTAG
1 GGGTTAG
36209823 GGGTT
1 GGGTT
36209828 TATAGTTAAT
Statistics
Matches: 59, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
6 9 0.15
7 40 0.68
8 10 0.17
ACGTcount: A:0.17, C:0.01, G:0.48, T:0.34
Consensus pattern (7 bp):
GGGTTAG
Found at i:36214127 original size:58 final size:58
Alignment explanation
Indices: 36214037--36214152 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
36214027 TTCCAGTTAA
36214037 GTATGGCTGAAATTTTGCTCGGGTCAACTCGAATACCCGATGCGGATACCACATGACC
1 GTATGGCTGAAATTTTGCTCGGGTCAACTCGAATACCCGATGCGGATACCACATGACC
*
36214095 GTATGGCTGAAATTTTGTTCGGGTCAACTCGAATACCCGATGCGGATACCACATGACC
1 GTATGGCTGAAATTTTGCTCGGGTCAACTCGAATACCCGATGCGGATACCACATGACC
36214153 CAAGAAGCTA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (58 bp):
GTATGGCTGAAATTTTGCTCGGGTCAACTCGAATACCCGATGCGGATACCACATGACC
Done.