Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 117 of 203
Found at i:37037688 original size:15 final size:14
Alignment explanation
Indices: 37037667--37037719 Score: 58
Period size: 15 Copynumber: 3.9 Consensus size: 14
37037657 CCAATAATTT
37037667 TTTTAATATTTAAA
1 TTTTAATATTTAAA
*
37037681 TATTTAATATTTTAA
1 T-TTTAATATTTAAA
*
37037696 TTTTAAT-TTTTAA
1 TTTTAATATTTAAA
37037709 -TTTAA-ATTTAA
1 TTTTAATATTTAA
37037720 TAATTTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
12 9 0.26
13 6 0.17
14 7 0.20
15 13 0.37
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTAATATTTAAA
Found at i:37037689 original size:7 final size:7
Alignment explanation
Indices: 37037668--37037721 Score: 53
Period size: 6 Copynumber: 8.0 Consensus size: 7
37037658 CAATAATTTT
37037668 TTTAATA
1 TTTAATA
37037675 TTTAAATA
1 TTT-AATA
37037683 TTTAATA
1 TTTAATA
37037690 TTTTAAT-
1 -TTTAATA
37037697 TTTAAT-
1 TTTAATA
*
37037703 TTTTA-A
1 TTTAATA
37037709 TTTAA-A
1 TTTAATA
37037715 TTTAATA
1 TTTAATA
37037722 ATTTTATTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
6 20 0.49
7 8 0.20
8 13 0.32
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTAATA
Found at i:37038857 original size:40 final size:40
Alignment explanation
Indices: 37038801--37038879 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
37038791 AGTGGGTGTC
*
37038801 TATTAGGATAAAAAGTTTGATATATTTTAGGACTCTAATT
1 TATTAGGATAAAAAGTTTGATATATTTTAAGACTCTAATT
*
37038841 TATTAGGATAAGAAGTTTGATATATTTTAAGACTCTAAT
1 TATTAGGATAAAAAGTTTGATATATTTTAAGACTCTAAT
37038880 GTTGGTTAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (40 bp):
TATTAGGATAAAAAGTTTGATATATTTTAAGACTCTAATT
Found at i:37045435 original size:30 final size:30
Alignment explanation
Indices: 37045401--37045493 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
37045391 CAAAATAATG
37045401 GTGATATAAATGTTTAACAAATCAATTCAA
1 GTGATATAAATGTTTAACAAATCAATTCAA
* * *
37045431 GTGATAATGATAA-ATTTCA-AAAT-AA-T--G
1 GTGAT-AT-A-AATGTTTAACAAATCAATTCAA
37045458 GTGATATAAATGTTTAACAAATCAATTCAA
1 GTGATATAAATGTTTAACAAATCAATTCAA
37045488 GTGATA
1 GTGATA
37045494 ATGTTTTGGT
Statistics
Matches: 48, Mismatches: 6, Indels: 18
0.67 0.08 0.25
Matches are distributed among these distances:
24 2 0.04
25 5 0.10
26 6 0.12
27 7 0.15
28 1 0.02
29 1 0.02
30 13 0.27
31 6 0.12
32 5 0.10
33 2 0.04
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (30 bp):
GTGATATAAATGTTTAACAAATCAATTCAA
Found at i:37045439 original size:27 final size:27
Alignment explanation
Indices: 37045409--37045499 Score: 71
Period size: 27 Copynumber: 3.3 Consensus size: 27
37045399 TGGTGATATA
37045409 AATGTTTAACAAATCAATTCAAGTGAT
1 AATGTTTAACAAATCAATTCAAGTGAT
* ** *
37045436 AATG-ATAA-ATTTCAAAAT-AATGGTGATAT
1 AATGTTTAACAAATC-AATTCAA--GTG--AT
37045465 AAATGTTTAACAAATCAATTCAAGTGAT
1 -AATGTTTAACAAATCAATTCAAGTGAT
37045493 AATGTTT
1 AATGTTT
37045500 TGGTCAATAA
Statistics
Matches: 47, Mismatches: 8, Indels: 18
0.64 0.11 0.25
Matches are distributed among these distances:
25 5 0.11
26 6 0.13
27 14 0.30
28 2 0.04
29 2 0.04
30 7 0.15
31 6 0.13
32 5 0.11
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (27 bp):
AATGTTTAACAAATCAATTCAAGTGAT
Found at i:37045471 original size:57 final size:57
Alignment explanation
Indices: 37045383--37045496 Score: 228
Period size: 57 Copynumber: 2.0 Consensus size: 57
37045373 TTTCTCATCC
37045383 ATAAATTTCAAAATAATGGTGATATAAATGTTTAACAAATCAATTCAAGTGATAATG
1 ATAAATTTCAAAATAATGGTGATATAAATGTTTAACAAATCAATTCAAGTGATAATG
37045440 ATAAATTTCAAAATAATGGTGATATAAATGTTTAACAAATCAATTCAAGTGATAATG
1 ATAAATTTCAAAATAATGGTGATATAAATGTTTAACAAATCAATTCAAGTGATAATG
37045497 TTTTGGTCAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.33
Consensus pattern (57 bp):
ATAAATTTCAAAATAATGGTGATATAAATGTTTAACAAATCAATTCAAGTGATAATG
Found at i:37048780 original size:6 final size:6
Alignment explanation
Indices: 37048769--37048798 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
37048759 AGAAATGCTG
37048769 AAAATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA
37048799 GGGGGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:37051351 original size:15 final size:15
Alignment explanation
Indices: 37051331--37051365 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
37051321 ATCGTTCGGC
37051331 TCCTCGAAAAATAAT
1 TCCTCGAAAAATAAT
37051346 TCCTCGAAAAATAAT
1 TCCTCGAAAAATAAT
37051361 TCCTC
1 TCCTC
37051366 CACCACGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.40, C:0.26, G:0.06, T:0.29
Consensus pattern (15 bp):
TCCTCGAAAAATAAT
Found at i:37061478 original size:57 final size:57
Alignment explanation
Indices: 37061403--37061515 Score: 136
Period size: 57 Copynumber: 2.0 Consensus size: 57
37061393 CCATTATTCA
* *** * *
37061403 CATTTTGACAACATAAATATGTGCATTAAGAGACATTATGACAGCAGCTGTAAATTG
1 CATTTGGACAACATAAATATACACATTAAAAGACATTATGACAGCAACTGTAAATTG
* * * *
37061460 CATTTGGACAGCATAAATATACACATTAAAAGATATTTTGGCAGCAACTGTAAATT
1 CATTTGGACAACATAAATATACACATTAAAAGACATTATGACAGCAACTGTAAATT
37061516 ACAAGTGCAA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (57 bp):
CATTTGGACAACATAAATATACACATTAAAAGACATTATGACAGCAACTGTAAATTG
Found at i:37062664 original size:305 final size:304
Alignment explanation
Indices: 37061968--37062820 Score: 1216
Period size: 305 Copynumber: 2.8 Consensus size: 304
37061958 AATTACAAAA
* * * * * * *
37061968 GAATAAAAAAGAAAGCCATTTTCACCAGTAGTAACATGAAGAGTGAAGAAATAAAATGATTTTAG
1 GAATAAAAAGGAAGGCCCTTTTCACCAGCAGTAACATGCAGAGCGAAGAAATAAAACGATTTTAG
* *
37062033 ATCCAAATCTGAGTAAAACCAAGTTCTTAGCAGAAATTATGCAAAACCCACATCAGAAATACAAT
66 ATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGAAATACAAT
* * * *
37062098 TAATCATGTAGAGTCTCCAAGTACCAAGCAGAT-AAACTAATAGCATAGAGATATGGTTTAAAGA
131 TAATAATGTAGAGTCTCCAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAAAGA
**
37062162 AAACAAAAGCTACTAACCAATTAGCTCTGAACCAAAATTTACCCAAGACCAGCAAAAAAAAATTG
196 AAACAAAAGCTACTAACCAATTAGCTCTGAACCAAAACCTACCCAAGACCAGCAAAAAAAAATTG
37062227 CAAGGTAGTTCAACACAAAATCAAAAGAAAGAAAGAATAATCTG
261 CAAGGTAGTTCAACACAAAATCAAAAGAAAGAAAGAATAATCTG
* * *
37062271 GAATAAAAAGGAAGGCCCTTTTCACCAGCAATAACATGCAAAGCGAAAAAATAAAACGATTTTAG
1 GAATAAAAAGGAAGGCCCTTTTCACCAGCAGTAACATGCAGAGCGAAGAAATAAAACGATTTTAG
*
37062336 ATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGATATACAAT
66 ATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGAAATACAAT
* * *
37062401 TAATAATGTAGAGTCTCAAAGTACCAAGCAAATAAAACTAATAACATAAAAATATAGTTTAAAGA
131 TAATAATGTAGAGTCTCCAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAAAGA
* * *
37062466 ATACAAAAGCTACTAACCAATTAGCT-TGAACCAAAACCTATCCAATACCAGCAAAAAGAAAGAT
196 AAACAAAAGCTACTAACCAATTAGCTCTGAACCAAAACCTACCCAAGACCAGCAAAAA-AAA-AT
* * * *
37062530 TGGAAGGT-GATTCAGCACAAAATCAACAA-TAAGAAAGAATAATTTG
259 TGCAAGGTAG-TTCAACACAAAATCAA-AAGAAAGAAAGAATAATCTG
* * *
37062576 GAATAAAAAGGAAGGCCCTTTTCACTAGCAGTAATATGCAGAGCGAAGAAATAAAACGGTTTTAG
1 GAATAAAAAGGAAGGCCCTTTTCACCAGCAGTAACATGCAGAGCGAAGAAATAAAACGATTTTAG
* *
37062641 ATCCAAATTTGAGTAAGACCAAGTTGTTAGTAGAAATTATGCAAAACCCACATCAGAAATACAAT
66 ATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGAAATACAAT
*
37062706 TAATAATGTAGAGTCTCCAAGTACTAAGCAGATAAAACTAATAACATAG--A-A-A---T----A
131 TAATAATGTAGAGTCTCCAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAAAGA
* * *
37062760 AAA-AAAAGCTACTAACCAATTAGCTCTGAACCAAAACTTACCTAAGATCAGCAAAAAAAAA
196 AAACAAAAGCTACTAACCAATTAGCTCTGAACCAAAACCTACCCAAGACCAGCAAAAAAAAA
37062821 AAAAAGATAC
Statistics
Matches: 496, Mismatches: 48, Indels: 23
0.87 0.08 0.04
Matches are distributed among these distances:
292 1 0.00
293 25 0.05
294 29 0.06
298 1 0.00
301 1 0.00
302 1 0.00
303 175 0.35
304 56 0.11
305 205 0.41
306 2 0.00
ACGTcount: A:0.48, C:0.16, G:0.14, T:0.21
Consensus pattern (304 bp):
GAATAAAAAGGAAGGCCCTTTTCACCAGCAGTAACATGCAGAGCGAAGAAATAAAACGATTTTAG
ATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGAAATACAAT
TAATAATGTAGAGTCTCCAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAAAGA
AAACAAAAGCTACTAACCAATTAGCTCTGAACCAAAACCTACCCAAGACCAGCAAAAAAAAATTG
CAAGGTAGTTCAACACAAAATCAAAAGAAAGAAAGAATAATCTG
Found at i:37064337 original size:30 final size:30
Alignment explanation
Indices: 37064296--37064432 Score: 184
Period size: 30 Copynumber: 4.6 Consensus size: 30
37064286 TAAGGTTACT
*
37064296 CACAAGATGACATTATAATAGAATTGCTCA
1 CACAAGCTGACATTATAATAGAATTGCTCA
* * * *
37064326 GACAAGTTGACATTATAATAGATTTTCTCA
1 CACAAGCTGACATTATAATAGAATTGCTCA
* *
37064356 CACAAGCTGATATTATAATAGAATTTCTCA
1 CACAAGCTGACATTATAATAGAATTGCTCA
* * *
37064386 CACAAGTTGACATTATAGTAGATTTGCTCA
1 CACAAGCTGACATTATAATAGAATTGCTCA
37064416 CACAAGCTGACATTATA
1 CACAAGCTGACATTATA
37064433 TCGAGATTAC
Statistics
Matches: 93, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 93 1.00
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (30 bp):
CACAAGCTGACATTATAATAGAATTGCTCA
Found at i:37064374 original size:60 final size:60
Alignment explanation
Indices: 37064296--37064432 Score: 220
Period size: 60 Copynumber: 2.3 Consensus size: 60
37064286 TAAGGTTACT
* * *
37064296 CACAAGATGACATTATAATAGAATTGCTCAGACAAGTTGACATTATAATAGATTTTCTCA
1 CACAAGCTGACATTATAATAGAATTGCTCACACAAGTTGACATTATAATAGATTTGCTCA
* * *
37064356 CACAAGCTGATATTATAATAGAATTTCTCACACAAGTTGACATTATAGTAGATTTGCTCA
1 CACAAGCTGACATTATAATAGAATTGCTCACACAAGTTGACATTATAATAGATTTGCTCA
37064416 CACAAGCTGACATTATA
1 CACAAGCTGACATTATA
37064433 TCGAGATTAC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 70 1.00
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (60 bp):
CACAAGCTGACATTATAATAGAATTGCTCACACAAGTTGACATTATAATAGATTTGCTCA
Found at i:37065583 original size:15 final size:15
Alignment explanation
Indices: 37065565--37065627 Score: 72
Period size: 15 Copynumber: 4.2 Consensus size: 15
37065555 TTATATACTT
37065565 TTAATTAAAACTTAA
1 TTAATTAAAACTTAA
* * * *
37065580 TTAATCATAATTTAT
1 TTAATTAAAACTTAA
*
37065595 TTAATTAAACCTTAA
1 TTAATTAAAACTTAA
*
37065610 TTAATTAAAAATTAA
1 TTAATTAAAACTTAA
37065625 TTA
1 TTA
37065628 TAATTAACCA
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.44
Consensus pattern (15 bp):
TTAATTAAAACTTAA
Found at i:37069842 original size:41 final size:41
Alignment explanation
Indices: 37069784--37069992 Score: 258
Period size: 41 Copynumber: 5.1 Consensus size: 41
37069774 AACAAGTGCT
* * *
37069784 TTCAGGGGCACTAAAGTACAAACAGGGGCACACATGTGCAA
1 TTCAGGGGTACCAAAGTACAAACAGGGGCACATATGTGCAA
* * * *
37069825 TTCGGGGGTAGCAAAGTAAAAACAGGGGCGCATATGTGCAA
1 TTCAGGGGTACCAAAGTACAAACAGGGGCACATATGTGCAA
*
37069866 TTCAGGGGTACCAAAGTACAAATAGGGGCA-ACTATGTGCAA
1 TTCAGGGGTACCAAAGTACAAACAGGGGCACA-TATGTGCAA
* ** * **
37069907 TTCAAGGGTACTGAAGTACAAACAGGGGCACGTAAATGCAA
1 TTCAGGGGTACCAAAGTACAAACAGGGGCACATATGTGCAA
* *
37069948 TTCAGGGGTACCGAAGTACAAACAGGGGCACATATGTGTAA
1 TTCAGGGGTACCAAAGTACAAACAGGGGCACATATGTGCAA
37069989 TTCA
1 TTCA
37069993 AAAATATTCT
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
40 1 0.01
41 140 0.99
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.18
Consensus pattern (41 bp):
TTCAGGGGTACCAAAGTACAAACAGGGGCACATATGTGCAA
Found at i:37069975 original size:20 final size:20
Alignment explanation
Indices: 37069912--37069975 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
37069902 TGCAATTCAA
*
37069912 GGGTACTGAAGTACAAACAG
1 GGGTACCGAAGTACAAACAG
* * * *
37069932 GGGCA-CGTAAATGCAATTCAG
1 GGGTACCG-AAGTACAA-ACAG
37069953 GGGTACCGAAGTACAAACAG
1 GGGTACCGAAGTACAAACAG
37069973 GGG
1 GGG
37069976 CACATATGTG
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
19 1 0.03
20 16 0.50
21 13 0.41
22 2 0.06
ACGTcount: A:0.36, C:0.17, G:0.33, T:0.14
Consensus pattern (20 bp):
GGGTACCGAAGTACAAACAG
Found at i:37088511 original size:21 final size:21
Alignment explanation
Indices: 37088487--37088530 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
37088477 CTCATTCTAT
37088487 CAATCGTAACATTTAAGTTTA
1 CAATCGTAACATTTAAGTTTA
37088508 CAATCGTAACATTTAAGTTTA
1 CAATCGTAACATTTAAGTTTA
37088529 CA
1 CA
37088531 TTCAATATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (21 bp):
CAATCGTAACATTTAAGTTTA
Found at i:37091248 original size:23 final size:22
Alignment explanation
Indices: 37091221--37091272 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 22
37091211 TTGATACACA
37091221 TCTTTCTCATTTTCTCTTC-TTTT
1 TCTTTCTCATTTT-T-TTCATTTT
*
37091244 TCTTTTTTCATTTTTTTCATTTT
1 TC-TTTCTCATTTTTTTCATTTT
37091267 TCTTTC
1 TCTTTC
37091273 CTACCATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 6 0.24
23 9 0.36
24 10 0.40
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.73
Consensus pattern (22 bp):
TCTTTCTCATTTTTTTCATTTT
Found at i:37091587 original size:13 final size:13
Alignment explanation
Indices: 37091569--37091593 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37091559 TCGAAACGAC
37091569 CCTTTAACCATTA
1 CCTTTAACCATTA
37091582 CCTTTAACCATT
1 CCTTTAACCATT
37091594 GACCGTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.00, T:0.40
Consensus pattern (13 bp):
CCTTTAACCATTA
Found at i:37091884 original size:10 final size:9
Alignment explanation
Indices: 37091839--37091909 Score: 56
Period size: 10 Copynumber: 7.7 Consensus size: 9
37091829 TTTCTATATA
37091839 TTTTATAAT
1 TTTTATAAT
37091848 TTTTA-AGAT
1 TTTTATA-AT
*
37091857 TTTTATAAAA
1 TTTTAT-AAT
37091867 TTTTATAAT
1 TTTTATAAT
37091876 TTTTAATAAT
1 TTTT-ATAAT
*
37091886 ATTTA-AAT
1 TTTTATAAT
* *
37091894 ATTTAAATAT
1 TTTTATA-AT
37091904 TTTTAT
1 TTTTAT
37091910 TAAAATTTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
8 9 0.18
9 20 0.39
10 21 0.41
11 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (9 bp):
TTTTATAAT
Found at i:37091897 original size:28 final size:28
Alignment explanation
Indices: 37091836--37091936 Score: 98
Period size: 28 Copynumber: 3.6 Consensus size: 28
37091826 ATATTTCTAT
* *
37091836 ATATTTTATAATTTTTAA-GATTTTTATA
1 ATATTTTATAATTTTTAATAATATTTA-A
*
37091864 AAATTTTATAATTTTTAATAATATTTAA
1 ATATTTTATAATTTTTAATAATATTTAA
* * *
37091892 ATA-TTTAAATATTTTTATTAAAATTTAA
1 ATATTTTATA-ATTTTTAATAATATTTAA
* *
37091920 TTATTTTATAACTTTTA
1 ATATTTTATAATTTTTA
37091937 TTTTTATTTT
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
27 5 0.08
28 44 0.73
29 11 0.18
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (28 bp):
ATATTTTATAATTTTTAATAATATTTAA
Found at i:37091919 original size:20 final size:21
Alignment explanation
Indices: 37091888--37091926 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
37091878 TTAATAATAT
37091888 TTAAATATTTAAATATTTTTA
1 TTAAATATTTAAATATTTTTA
*
37091909 TTAAA-ATTTAATTATTTT
1 TTAAATATTTAAATATTTT
37091927 ATAACTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTAAATATTTAAATATTTTTA
Found at i:37092364 original size:245 final size:245
Alignment explanation
Indices: 37091934--37092431 Score: 980
Period size: 245 Copynumber: 2.0 Consensus size: 245
37091924 TTTATAACTT
37091934 TTATTTTTATTTTTATAATTATTTGCCACATGTCATGCTGTGGTTGTAACACGTAATGACTTTAA
1 TTATTTTTATTTTTATAATTATTTGCCACATGTCATGCTGTGGTTGTAACACGTAATGACTTTAA
37091999 CTAAAAAAAATTAGGTTAGTTCAAGTACCCAATTGAGTGCCAAAAAAAAAAGAGCAATGGCTTAA
66 CTAAAAAAAATTAGGTTAGTTCAAGTACCCAATTGAGTGCCAAAAAAAAAAGAGCAATGGCTTAA
37092064 TTGCTTTTTTGAAAAAGTTTAAGGGTCTTTTTGATGCATTTTGAAAGTTCAAATACCCAATTGCG
131 TTGCTTTTTTGAAAAAGTTTAAGGGTCTTTTTGATGCATTTTGAAAGTTCAAATACCCAATTGCG
*
37092129 TGTAAAAAAAAGTAGGAGCTTAATTGCTTTTTCTGAAAAAAGTTTGAGGG
196 TGTAAAAAAAAGTAGGAGCTTAATTGCTTTTTCTGAAAAAAGTTTGAGGA
37092179 TTATTTTTATTTTTATAATTATTTGCCACATGTCATGCTGTGGTTGTAACACGTAATGACTTTAA
1 TTATTTTTATTTTTATAATTATTTGCCACATGTCATGCTGTGGTTGTAACACGTAATGACTTTAA
37092244 CTAAAAAAAATTAGGTTAGTTCAAGTACCCAATTGAGTGCCAAAAAAAAAAGAGCAATGGCTTAA
66 CTAAAAAAAATTAGGTTAGTTCAAGTACCCAATTGAGTGCCAAAAAAAAAAGAGCAATGGCTTAA
37092309 TTGCTTTTTTGAAAAAGTTTAAGGGTCTTTTTGATGCATTTTGAAAGTTCAAATACCCAATTGCG
131 TTGCTTTTTTGAAAAAGTTTAAGGGTCTTTTTGATGCATTTTGAAAGTTCAAATACCCAATTGCG
37092374 TGTAAAAAAAAGTAGGAGCTTAATTGCTTTTTCTGAAAAAAGTTTGAGGA
196 TGTAAAAAAAAGTAGGAGCTTAATTGCTTTTTCTGAAAAAAGTTTGAGGA
37092424 TT-TTTTTA
1 TTATTTTTA
37092432 ATGCATTATG
Statistics
Matches: 252, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
244 6 0.02
245 246 0.98
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (245 bp):
TTATTTTTATTTTTATAATTATTTGCCACATGTCATGCTGTGGTTGTAACACGTAATGACTTTAA
CTAAAAAAAATTAGGTTAGTTCAAGTACCCAATTGAGTGCCAAAAAAAAAAGAGCAATGGCTTAA
TTGCTTTTTTGAAAAAGTTTAAGGGTCTTTTTGATGCATTTTGAAAGTTCAAATACCCAATTGCG
TGTAAAAAAAAGTAGGAGCTTAATTGCTTTTTCTGAAAAAAGTTTGAGGA
Found at i:37092471 original size:90 final size:88
Alignment explanation
Indices: 37092303--37092475 Score: 213
Period size: 90 Copynumber: 1.9 Consensus size: 88
37092293 AAGAGCAATG
* * *
37092303 GCTTAATTGCTTTTTTGAAAAAGTTTAAGGGTCTTTTTGATGCATTTTGAAAGTTCAAATACCCA
1 GCTTAATTGCTTTTTTGAAAAAGTTTAAGGATCTTTTTAATGCATTATGAAAGTTCAAATACCCA
* **
37092368 ATTGCGTGTAAAAAAAAGTAGGA
66 ATTGAGTACAAAAAAAAGTAGGA
* * * **
37092391 GCTTAATTGCTTTTTCTGAAAAAAGTTTGAGGATTTTTTTAATGCATTATGAAAGTTTAGGTACC
1 GCTTAATTGCTTTTT-TG-AAAAAGTTTAAGGATCTTTTTAATGCATTATGAAAGTTCAAATACC
37092456 CAAGTT-AGTACAAAAAAAAG
64 CAA-TTGAGTACAAAAAAAAG
37092476 ACTTAATTGT
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
88 15 0.21
89 2 0.03
90 52 0.73
91 2 0.03
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.36
Consensus pattern (88 bp):
GCTTAATTGCTTTTTTGAAAAAGTTTAAGGATCTTTTTAATGCATTATGAAAGTTCAAATACCCA
ATTGAGTACAAAAAAAAGTAGGA
Found at i:37093792 original size:23 final size:23
Alignment explanation
Indices: 37093749--37093792 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
37093739 AAAGGTTAAG
**
37093749 ATTTTGTTGAATTTTTTTATATT
1 ATTTTGTTGAATTTTCCTATATT
37093772 ATTTTG-TGAATTATTCCTATA
1 ATTTTGTTGAATT-TTCCTATA
37093793 AAATTTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.25, C:0.05, G:0.09, T:0.61
Consensus pattern (23 bp):
ATTTTGTTGAATTTTCCTATATT
Found at i:37098864 original size:47 final size:47
Alignment explanation
Indices: 37098811--37098902 Score: 132
Period size: 47 Copynumber: 2.0 Consensus size: 47
37098801 CCCATGTTCA
*
37098811 AATTTTTAGATTTAGTAAAGTTTGCG-AGTATTGCCATTGTAGGGAGG
1 AATTTTTAGATTTAGTAAAGTTTGCGAAG-ATTGCCATGGTAGGGAGG
* * *
37098858 AATTTTTAGATTTGGTGAAGTTTGTGAAGATTGCCATGGTAGGGA
1 AATTTTTAGATTTAGTAAAGTTTGCGAAGATTGCCATGGTAGGGA
37098903 AATTAAGTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 38 0.95
48 2 0.05
ACGTcount: A:0.27, C:0.05, G:0.29, T:0.38
Consensus pattern (47 bp):
AATTTTTAGATTTAGTAAAGTTTGCGAAGATTGCCATGGTAGGGAGG
Found at i:37100413 original size:30 final size:28
Alignment explanation
Indices: 37100377--37100436 Score: 86
Period size: 27 Copynumber: 2.1 Consensus size: 28
37100367 GTGGAAAGGA
37100377 AAAGATCACTGAGTAGACGTCTTC-ATTCAT
1 AAAGATCACT--G-AGACGTCTTCGATTCAT
37100407 AAAGATCACTGAGACGTCTTCGATTCAT
1 AAAGATCACTGAGACGTCTTCGATTCAT
37100435 AA
1 AA
37100437 CATCCATCGT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
27 10 0.34
28 9 0.31
30 10 0.34
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (28 bp):
AAAGATCACTGAGACGTCTTCGATTCAT
Found at i:37100662 original size:40 final size:36
Alignment explanation
Indices: 37100605--37100744 Score: 104
Period size: 40 Copynumber: 3.7 Consensus size: 36
37100595 GTGACAATTT
* *
37100605 GTTGGTTAAACCAACTAGAGTTGGGCTCACATTTAATATC
1 GTTGGTTTATCCAACTAGAGTTGGG-TCACA---AATATC
* *
37100645 GTTGGTTTATCCGACTAGCA-CTGGG-CACAAATATC
1 GTTGGTTTATCCAACTAG-AGTTGGGTCACAAATATC
* *
37100680 GTTGGTTTATCCAACTAAAGTTGGGTTCACTAATCATTTC
1 GTTGGTTTATCCAACTAGAGTTGGG-TCAC-AA--ATATC
** *
37100720 GTCAGTTTATCCAACTAGCGTTGGG
1 GTTGGTTTATCCAACTAGAGTTGGG
37100745 CGCAATTTCC
Statistics
Matches: 81, Mismatches: 12, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
34 1 0.01
35 26 0.32
37 3 0.04
38 6 0.07
40 44 0.54
41 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (36 bp):
GTTGGTTTATCCAACTAGAGTTGGGTCACAAATATC
Found at i:37100874 original size:69 final size:68
Alignment explanation
Indices: 37100725--37100886 Score: 189
Period size: 69 Copynumber: 2.4 Consensus size: 68
37100715 ATTTCGTCAG
* * * * * *
37100725 TTTATCCAACTAGCGTTGGGCGCAATTTCCGTCAGTTTATCTGACAGTGCTAGGCACACATTTGT
1 TTTATCTAACTAGCGCTGGGCGCAACTTCCGTCAGTTTATCTAACAGTGCTAGGCACACAATTAT
*
37100790 CGG
66 CGA
* * * * *
37100793 TTTATCTGACTAGCGCTGGGTGCAACTTCCGTCAGTTTGTCTAACTATTGCTGGGCACACAATTA
1 TTTATCTAACTAGCGCTGGGCGCAACTTCCGTCAGTTTATCTAAC-AGTGCTAGGCACACAATTA
37100858 TCGA
65 TCGA
**
37100862 TTTATCTAACTAGCATTGGGCGCAA
1 TTTATCTAACTAGCGCTGGGCGCAA
37100887 ACTCTTTCAC
Statistics
Matches: 77, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
68 38 0.49
69 39 0.51
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (68 bp):
TTTATCTAACTAGCGCTGGGCGCAACTTCCGTCAGTTTATCTAACAGTGCTAGGCACACAATTAT
CGA
Found at i:37108578 original size:49 final size:49
Alignment explanation
Indices: 37108439--37109225 Score: 1122
Period size: 49 Copynumber: 16.6 Consensus size: 49
37108429 TATTTGAATA
37108439 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
37108486 AATGTGCAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
37108533 AATGTGAAAATGGATATATATGTGATAAGGCCTAATAGCCGATGTGACG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
37108582 AATGTGAAAGTG--TATATATGTGATAAGGCCGAAGGGCC-A-ATG-TG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37108626 -ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC-A-ATG-TG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
37108671 -ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37108719 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCC-A-ATG-TG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37108763 -ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37108811 AATGTGAAAATGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37108860 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37108909 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37108958 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37109007 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37109056 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
37109105 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
37109152 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37109199 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
37109226 TCCCGAAGGG
Statistics
Matches: 688, Mismatches: 36, Indels: 32
0.91 0.05 0.04
Matches are distributed among these distances:
43 22 0.03
44 3 0.00
45 99 0.14
46 4 0.01
47 200 0.29
48 5 0.01
49 355 0.52
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:37114519 original size:50 final size:50
Alignment explanation
Indices: 37114404--37114696 Score: 419
Period size: 50 Copynumber: 5.8 Consensus size: 50
37114394 GATAATAACA
** *
37114404 TGCCAAAT-CCATGTCCCAGACATGGTCTTACATGGGATGTACTCATGTCGG
1 TGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGG
* *
37114455 TGCCCATGCCATGTCCCAAACATGGTCTTACGA-GGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTCGG
* * * * * *
37114505 TGCTAATGCCATGTCCCGGACATGGCCTTACATAGGACCTCTCATTTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
37114555 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
37114605 TGCCAATGCAATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
37114655 TGCCAATGCCATGTCCCATACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
37114697 TTACCCCAAT
Statistics
Matches: 216, Mismatches: 23, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
49 1 0.00
50 183 0.85
51 31 0.14
52 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:37114812 original size:13 final size:13
Alignment explanation
Indices: 37114791--37114820 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
37114781 GCTTGGATCA
37114791 TCATCAAATAAAT
1 TCATCAAATAAAT
*
37114804 TCATGAAATAAAT
1 TCATCAAATAAAT
37114817 TCAT
1 TCAT
37114821 TATTTCTAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (13 bp):
TCATCAAATAAAT
Found at i:37116849 original size:22 final size:24
Alignment explanation
Indices: 37116806--37116849 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
37116796 GCATGATATT
37116806 TCAATAAACAAACAATTCAATGAA
1 TCAATAAACAAACAATTCAATGAA
*
37116830 TCAATAAA-AAA-AATTGAATG
1 TCAATAAACAAACAATTCAATG
37116850 TAGGAACCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 3 0.16
24 8 0.42
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.23
Consensus pattern (24 bp):
TCAATAAACAAACAATTCAATGAA
Found at i:37122886 original size:29 final size:28
Alignment explanation
Indices: 37122854--37122917 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
37122844 CCTATAACCG
37122854 TATATATTATATATAATAAAACCCACACA
1 TATATATTATATATAATAAAA-CCACACA
* * * * *
37122883 TATATAGTATGTATAGTAGAACCATACA
1 TATATATTATATATAATAAAACCACACA
37122911 TATATAT
1 TATATAT
37122918 GTACTATGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
28 12 0.41
29 17 0.59
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.34
Consensus pattern (28 bp):
TATATATTATATATAATAAAACCACACA
Found at i:37128930 original size:29 final size:29
Alignment explanation
Indices: 37128898--37129103 Score: 191
Period size: 29 Copynumber: 7.1 Consensus size: 29
37128888 AAAGAAAGCA
* * *
37128898 TTTGTGGCGATCTTTGTTAAATGGAAGTC
1 TTTGTGGAGATCTCTATTAAATGGAAGTC
* *
37128927 TTTGTGGCGATCTGTATTAAATGGAA-TAC
1 TTTGTGGAGATCTCTATTAAATGGAAGT-C
* * * * *
37128956 CTTGTGGTGATCTTTGTTAAATGAAAAG-C
1 TTTGTGGAGATCTCTATTAAATG-GAAGTC
* * * * * **
37128985 TTTATAGTGATCTCTGTTAAATAGAAACC
1 TTTGTGGAGATCTCTATTAAATGGAAGTC
*
37129014 TTTGTGGAGATCTCTATTAAATGAAAGTC
1 TTTGTGGAGATCTCTATTAAATGGAAGTC
* *
37129043 TTTTTGGAGATCTCTATTAAATGAAAGTC
1 TTTGTGGAGATCTCTATTAAATGGAAGTC
*
37129072 TTTGTGGAGATCTCTATTAAATGGAAGCC
1 TTTGTGGAGATCTCTATTAAATGGAAGTC
37129101 TTT
1 TTT
37129104 TTAGTGATCT
Statistics
Matches: 147, Mismatches: 26, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
28 3 0.02
29 142 0.97
30 2 0.01
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.39
Consensus pattern (29 bp):
TTTGTGGAGATCTCTATTAAATGGAAGTC
Found at i:37129113 original size:87 final size:87
Alignment explanation
Indices: 37128892--37129103 Score: 230
Period size: 87 Copynumber: 2.4 Consensus size: 87
37128882 TTTCTAAAAG
* * * * * *
37128892 AAAGCATTTGTGGCGATCTTTGTTAAATGGAAGTCTTTGTGGCGATCTGTATTAAATGGAATACC
1 AAAGC-TTTGTGGAGATCTCTGTTAAATGGAAGCCTTTGTGGAGATCTCTATTAAATGAAATACC
* * *
37128957 TTGTGGTGATCTTTGTTAAATGA
65 TTGTGGAGATCTCTATTAAATGA
* * * * * *
37128980 AAAGCTTTATAGTGATCTCTGTTAAATAGAAACCTTTGTGGAGATCTCTATTAAATGAAAGT-CT
1 AAAGCTTTGTGGAGATCTCTGTTAAATGGAAGCCTTTGTGGAGATCTCTATTAAATGAAA-TACC
*
37129044 TTTTGGAGATCTCTATTAAATG-
65 TTGTGGAGATCTCTATTAAATGA
*
37129066 AAAGTCTTTGTGGAGATCTCTATTAAATGGAAGCCTTT
1 AAAG-CTTTGTGGAGATCTCTGTTAAATGGAAGCCTTT
37129104 TTAGTGATCT
Statistics
Matches: 101, Mismatches: 21, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
86 4 0.04
87 91 0.90
88 6 0.06
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.38
Consensus pattern (87 bp):
AAAGCTTTGTGGAGATCTCTGTTAAATGGAAGCCTTTGTGGAGATCTCTATTAAATGAAATACCT
TGTGGAGATCTCTATTAAATGA
Found at i:37129135 original size:58 final size:57
Alignment explanation
Indices: 37128943--37129136 Score: 190
Period size: 58 Copynumber: 3.4 Consensus size: 57
37128933 GCGATCTGTA
** * * * *
37128943 TTAAATGGAATACCTTGTGGTGATCTTTGTTAAATGAAAAGCTTTATAGTGATCTCTG
1 TTAAATGGAAGCCCTTGTGGAGATCTCTATTAAATG-AAAGCTTTTTAGTGATCTCTG
* * * * * *
37129001 TTAAATAGAAACCTTTGTGGAGATCTCTATTAAATGAAAGTCTTTTTGGAGATCTCTA
1 TTAAATGGAAGCCCTTGTGGAGATCTCTATTAAATGAAAG-CTTTTTAGTGATCTCTG
* * * * *
37129059 TTAAATGAAAGTCTTTGTGGAGATCTCTATTAAATGGAAGCCTTTTTAGTGATCTATG
1 TTAAATGGAAGCCCTTGTGGAGATCTCTATTAAATGAAAG-CTTTTTAGTGATCTCTG
* *
37129117 TGAAATGGATGCCCTTGTGG
1 TTAAATGGAAGCCCTTGTGG
37129137 CTATCTTAAC
Statistics
Matches: 109, Mismatches: 26, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
57 4 0.04
58 105 0.96
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.38
Consensus pattern (57 bp):
TTAAATGGAAGCCCTTGTGGAGATCTCTATTAAATGAAAGCTTTTTAGTGATCTCTG
Found at i:37136935 original size:93 final size:94
Alignment explanation
Indices: 37136807--37137009 Score: 273
Period size: 93 Copynumber: 2.2 Consensus size: 94
37136797 CGAACAGCAA
* *
37136807 GTTGATTTAAGATCATAGCCTAAGTTTAATCGATTTAATATCATTAACAATTTTC-TGAGTTAGT
1 GTTGATTTAAGATCATAGCCTAAGTTTAATCGATTTAATATCATGAACAATTTTCTTGAGATAGT
* * **
37136871 TGATTCAATTTCGCTACTGTAAATAGCTC
66 TGATTCAATATCACTACTCCAAATAGCTC
* * * *
37136900 GTTGATTTAATATCGTAGCCTAAGTTTATTTGATTTAATATCATGAACAATTTTCTTTGAGATAG
1 GTTGATTTAAGATCATAGCCTAAGTTTAATCGATTTAATATCATGAACAATTTTC-TTGAGATAG
*
37136965 TTGATTCAATATCACTACTCCAAATAGCTT
65 TTGATTCAATATCACTACTCCAAATAGCTC
* *
37136995 GCTAATTTAAGATCA
1 GTTGATTTAAGATCA
37137010 CGGTTAATAA
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
93 50 0.54
95 43 0.46
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (94 bp):
GTTGATTTAAGATCATAGCCTAAGTTTAATCGATTTAATATCATGAACAATTTTCTTGAGATAGT
TGATTCAATATCACTACTCCAAATAGCTC
Found at i:37137202 original size:218 final size:218
Alignment explanation
Indices: 37136895--37137323 Score: 795
Period size: 218 Copynumber: 2.0 Consensus size: 218
37136885 TACTGTAAAT
* * * * *
37136895 AGCTCGTTGATTTAATATCGTAGCCTAAGTTTATTTGATTTAATATCATGAACAATTTTCTTTGA
1 AGCTCGTTGATTTAAGATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGA
*
37136960 GATAGTTGATTCAATATCACTACTCCAAATAGCTTGCTAATTTAAGATCACGGTTAATAATGTTA
66 GATAGTTGATTCAATATCACTACTCCAAATAGCTTGCTAATTTAAGATCACGGCTAATAATGTTA
37137025 AGGCCCACTGATTTAGTCTAAGTTCATTTGATTTAATATTATGAACAATTTTCTTTGAGATAGCT
131 AGGCCCACTGATTTAGTCTAAGTTCATTTGATTTAATATTATGAACAATTTTCTTTGAGATAGCT
37137090 AATTTAATATCACTACGCCACAG
196 AATTTAATATCACTACGCCACAG
*
37137113 AGCTCGTTGATTTAAGATTGCAACCTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGA
1 AGCTCGTTGATTTAAGATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGA
37137178 GATAGTTGATTCAATATCACTACTCCAAATAGCTTGCTAATTTAAGATCACGGCTAATAATGTTA
66 GATAGTTGATTCAATATCACTACTCCAAATAGCTTGCTAATTTAAGATCACGGCTAATAATGTTA
37137243 AGGCCCACTGATTTAGTCTAAGTTCATTTGATTTAATATTATGAACAATTTTCTTTGAGATAGCT
131 AGGCCCACTGATTTAGTCTAAGTTCATTTGATTTAATATTATGAACAATTTTCTTTGAGATAGCT
37137308 AATTTAATATCACTAC
196 AATTTAATATCACTAC
37137324 TCCAAACAAC
Statistics
Matches: 204, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
218 204 1.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (218 bp):
AGCTCGTTGATTTAAGATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGA
GATAGTTGATTCAATATCACTACTCCAAATAGCTTGCTAATTTAAGATCACGGCTAATAATGTTA
AGGCCCACTGATTTAGTCTAAGTTCATTTGATTTAATATTATGAACAATTTTCTTTGAGATAGCT
AATTTAATATCACTACGCCACAG
Found at i:37137221 original size:95 final size:95
Alignment explanation
Indices: 37137042--37137225 Score: 269
Period size: 95 Copynumber: 1.9 Consensus size: 95
37137032 CTGATTTAGT
* * *
37137042 CTAAGTTCATTTGATTTAATATTATGAACAATTTTCTTTGAGATAGCTAATTTAATATCACTACG
1 CTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTCAATATCACTACG
* * *
37137107 CCACAGAGCTCGTTGATTTAAGATTGCAAC
66 CCAAAGAGCTCGCTAATTTAAGATTGCAAC
* * *
37137137 CTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGAGATAGTTGATTCAATATCACTACT
1 CTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTCAATATCACTACG
* *
37137202 CCAAATAGCTTGCTAATTTAAGAT
66 CCAAAGAGCTCGCTAATTTAAGAT
37137226 CACGGCTAAT
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
95 78 1.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (95 bp):
CTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTCAATATCACTACG
CCAAAGAGCTCGCTAATTTAAGATTGCAAC
Found at i:37137378 original size:123 final size:123
Alignment explanation
Indices: 37137137--37137456 Score: 295
Period size: 123 Copynumber: 2.5 Consensus size: 123
37137127 AGATTGCAAC
* *
37137137 CTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGAGATAGTTGATTCAATATCACTACT
1 CTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTCAATATCACTACT
* * * * * * **
37137202 CCAAATAGCTTGCTAATTTAAGATCACGGCTAATAATGTTAAGGCCCACTGATTTAGT
66 CCAAACAACTCGATAATTTAAGATCACAGCTAATAATATTAAGAACCACTGATTTAGT
* * *
37137260 CTAAGTTCATTTGATTTAATATTATGAACAATTTTCTTTGAGATAGCTAATTTAATATCACTACT
1 CTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTCAATATCACTACT
* * * * **
37137325 CCAAACAACTCGATCATTTAATATCGCAGC-AGAT-ATCATTAAGAATCGTTGATTTAAGAT
66 CCAAACAACTCGATAATTTAAGATCACAGCTA-ATAAT-ATTAAGAACCACTGATTT-AG-T
* ** * *
37137385 CACAGCCTATGTTCATTAAATTTAATATCATGAACAATTTTTTTTGAGTTAGCTGAA-TCAATAT
1 ------CTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGAGATAGCT-AATTCAATAT
*
37137449 CGCTACTC
59 CACTACTC
37137457 TAAATAGCTC
Statistics
Matches: 159, Mismatches: 27, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
122 3 0.02
123 96 0.60
124 2 0.01
125 1 0.01
131 55 0.35
132 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.38
Consensus pattern (123 bp):
CTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTCAATATCACTACT
CCAAACAACTCGATAATTTAAGATCACAGCTAATAATATTAAGAACCACTGATTTAGT
Found at i:37137597 original size:95 final size:95
Alignment explanation
Indices: 37137376--37137608 Score: 310
Period size: 95 Copynumber: 2.5 Consensus size: 95
37137366 AGAATCGTTG
* * * * *
37137376 ATTTAAGATCACAGCCTA-TGTTCATTAAATTTAATATCATGAACAATTTTTTTTGAGTTAGCTG
1 ATTTAAGATCGCAGCCTAGT-TTCATTAGATTTGATATCATGAAAAATTTTCTTTGAGTTAGCTG
*
37137440 AATCAATATCGCTACTCTAAATAGCTCTGTG
65 AATCAATATCGCTACTCTAAATAGCTCTGTA
* * *
37137471 ATTTAAGATCGCAACCTAAG-TTCATTCGATTTGATATCGTGAAAAATTTTCTTTGAGTTAGCTG
1 ATTTAAGATCGCAGCCT-AGTTTCATTAGATTTGATATCATGAAAAATTTTCTTTGAGTTAGCTG
*
37137535 ATTCAATATCGCTACTCTAAATAGCT-TGCTA
65 AATCAATATCGCTACTCTAAATAGCTCTG-TA
* *
37137566 ATTTAAGATCGCAGCCTAGTTTCATTTGATTTGACATCATGAA
1 ATTTAAGATCGCAGCCTAGTTTCATTAGATTTGATATCATGAA
37137609 TTATCTCATT
Statistics
Matches: 120, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
94 4 0.03
95 115 0.96
96 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.38
Consensus pattern (95 bp):
ATTTAAGATCGCAGCCTAGTTTCATTAGATTTGATATCATGAAAAATTTTCTTTGAGTTAGCTGA
ATCAATATCGCTACTCTAAATAGCTCTGTA
Found at i:37164868 original size:9 final size:9
Alignment explanation
Indices: 37164854--37164880 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
37164844 TTTATATAGG
37164854 GAGAGTTTA
1 GAGAGTTTA
37164863 GAGAGTTTA
1 GAGAGTTTA
37164872 GAGAGTTTA
1 GAGAGTTTA
37164881 ACTATGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (9 bp):
GAGAGTTTA
Found at i:37164985 original size:5 final size:6
Alignment explanation
Indices: 37164931--37164988 Score: 52
Period size: 6 Copynumber: 9.7 Consensus size: 6
37164921 CTACAAGATA
37164931 AATATT AA-ATT AA-ATT AAATATT AATATT AATA-T AATCACTTT AATATT
1 AATATT AATATT AATATT -AATATT AATATT AATATT AAT-A--TT AATATT
37164980 AA-ATT AATA
1 AATATT AATA
37164989 AAATATTATC
Statistics
Matches: 45, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
5 17 0.38
6 20 0.44
7 3 0.07
8 1 0.02
9 4 0.09
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (6 bp):
AATATT
Found at i:37167010 original size:16 final size:16
Alignment explanation
Indices: 37166978--37167011 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
37166968 CTAATATCCA
*
37166978 ATTATCATAATTGCAC
1 ATTATCATAATTACAC
*
37166994 ATTATCATATTTACAC
1 ATTATCATAATTACAC
37167010 AT
1 AT
37167012 ATATTTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTATCATAATTACAC
Found at i:37167064 original size:19 final size:18
Alignment explanation
Indices: 37167012--37167065 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
37167002 ATTTACACAT
*
37167012 ATATTTATTTCAATTCAA
1 ATATTTATATCAATTCAA
* * *
37167030 ATAATCA-ATAAATTCATA
1 ATATTTATATCAATTCA-A
37167048 ATATTTATATCAATTCAA
1 ATATTTATATCAATTCAA
37167066 TCCATTTCGA
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
17 7 0.26
18 12 0.44
19 8 0.30
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (18 bp):
ATATTTATATCAATTCAA
Found at i:37168432 original size:19 final size:20
Alignment explanation
Indices: 37168410--37168448 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37168400 ATTTTAATTA
*
37168410 ATTTGATC-AATTTAATTTT
1 ATTTGATCAAAATTAATTTT
37168429 ATTTGATCAAAATTAATTTT
1 ATTTGATCAAAATTAATTTT
37168449 CCTAAAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (20 bp):
ATTTGATCAAAATTAATTTT
Found at i:37169122 original size:12 final size:12
Alignment explanation
Indices: 37169105--37169129 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37169095 GGTGTTCATT
37169105 CGGTTAACCGAC
1 CGGTTAACCGAC
37169117 CGGTTAACCGAC
1 CGGTTAACCGAC
37169129 C
1 C
37169130 CGAAATAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:37169281 original size:9 final size:9
Alignment explanation
Indices: 37169263--37169330 Score: 91
Period size: 9 Copynumber: 7.6 Consensus size: 9
37169253 TTTGGTTAAA
*
37169263 AATTAACCG
1 AATTACCCG
37169272 AATTACCCG
1 AATTACCCG
* *
37169281 AATTAACCA
1 AATTACCCG
37169290 AATTACCCG
1 AATTACCCG
*
37169299 AATTACCCA
1 AATTACCCG
*
37169308 AATTAACCG
1 AATTACCCG
37169317 AATTACCCG
1 AATTACCCG
37169326 AATTA
1 AATTA
37169331 ATCAAATGAA
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.43, C:0.26, G:0.07, T:0.24
Consensus pattern (9 bp):
AATTACCCG
Found at i:37169294 original size:27 final size:27
Alignment explanation
Indices: 37169262--37169347 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 27
37169252 TTTTGGTTAA
* *
37169262 AAATTAACCGAATTACCCGAATTAACC
1 AAATTACCCGAATTACCCAAATTAACC
37169289 AAATTACCCGAATTACCCAAATTAACC
1 AAATTACCCGAATTACCCAAATTAACC
* ** *
37169316 GAATTACCCGAATTAATCAAATGAACC
1 AAATTACCCGAATTACCCAAATTAACC
37169343 AAATT
1 AAATT
37169348 GAATCACTAC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.45, C:0.24, G:0.07, T:0.23
Consensus pattern (27 bp):
AAATTACCCGAATTACCCAAATTAACC
Found at i:37176802 original size:16 final size:15
Alignment explanation
Indices: 37176767--37176800 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
37176757 ATTTTAAAGG
*
37176767 AAAATTAATATTGTA
1 AAAATGAATATTGTA
37176782 AAAATGAATATTGTA
1 AAAATGAATATTGTA
37176797 AAAA
1 AAAA
37176801 ATCTTGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (15 bp):
AAAATGAATATTGTA
Found at i:37185400 original size:100 final size:100
Alignment explanation
Indices: 37185224--37185428 Score: 392
Period size: 100 Copynumber: 2.0 Consensus size: 100
37185214 CCTTCCCCAG
37185224 TTCTTTTGAAAATCAATACATTCTCTTAGCAGTGCACTATGTATCGAAATGGGTAGAAGCAGTGG
1 TTCTTTTGAAAATCAATACATTCTCTTAGCAGTGCACTATGTATCGAAATGGGTAGAAGCAGTGG
*
37185289 TGTTACTAGCCAACGACACTAAATTTATGGTTAGA
66 TGTTACCAGCCAACGACACTAAATTTATGGTTAGA
37185324 TTCTTTTGAAAATCAATACATTCTCTTAGCAGTGCACTATGTATCGAAATGGGTAGAAGCAGTGG
1 TTCTTTTGAAAATCAATACATTCTCTTAGCAGTGCACTATGTATCGAAATGGGTAGAAGCAGTGG
*
37185389 TGTTACCAGCCAACGACCCTAAATTTATGGTTAGA
66 TGTTACCAGCCAACGACACTAAATTTATGGTTAGA
37185424 TTCTT
1 TTCTT
37185429 ACGTAATAAT
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 103 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (100 bp):
TTCTTTTGAAAATCAATACATTCTCTTAGCAGTGCACTATGTATCGAAATGGGTAGAAGCAGTGG
TGTTACCAGCCAACGACACTAAATTTATGGTTAGA
Found at i:37186767 original size:21 final size:20
Alignment explanation
Indices: 37186712--37186768 Score: 51
Period size: 21 Copynumber: 2.8 Consensus size: 20
37186702 TTTTTATATG
* *
37186712 TTTAAATGTTCTATGAAAAT
1 TTTATATGTTTTATGAAAAT
* * *
37186732 GTAATAATGTGTTATAGAAAAT
1 TTTAT-ATGTTTTAT-GAAAAT
37186754 TTTATATGTTTTATG
1 TTTATATGTTTTATG
37186769 CTTACATATT
Statistics
Matches: 27, Mismatches: 8, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
20 3 0.11
21 15 0.56
22 9 0.33
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.47
Consensus pattern (20 bp):
TTTATATGTTTTATGAAAAT
Found at i:37188644 original size:39 final size:41
Alignment explanation
Indices: 37188599--37188712 Score: 171
Period size: 40 Copynumber: 2.9 Consensus size: 41
37188589 GGCGTTTGGA
* *
37188599 TAAAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTT-T
1 TAAAAAAACGCCACTAAAAATCGAGCATTAGCGGCGCTTCT
* *
37188639 TAAAAAAACGCCACTAAAGATCGAGTATTAGCGGCGCTTCT
1 TAAAAAAACGCCACTAAAAATCGAGCATTAGCGGCGCTTCT
37188680 T-AAAAAACGCCACTAAAAAT-GAGCATTAGCGGC
1 TAAAAAAACGCCACTAAAAATCGAGCATTAGCGGC
37188713 TTTTTCCAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 12 0.18
40 53 0.79
41 2 0.03
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.19
Consensus pattern (41 bp):
TAAAAAAACGCCACTAAAAATCGAGCATTAGCGGCGCTTCT
Found at i:37194425 original size:20 final size:20
Alignment explanation
Indices: 37194396--37194435 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
37194386 TTCACCTCAT
*
37194396 GCATCGCATCATATGCATTA
1 GCATCACATCATATGCATTA
37194416 GCATCACATCATATGCATTA
1 GCATCACATCATATGCATTA
37194436 AAGACCTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (20 bp):
GCATCACATCATATGCATTA
Found at i:37202801 original size:45 final size:45
Alignment explanation
Indices: 37202524--37202810 Score: 154
Period size: 44 Copynumber: 6.4 Consensus size: 45
37202514 ATGTATTGGC
* * ** *
37202524 GTGAAGTAGATCAGAGATACTAGATCTTACCTTCCCATACTGGTG
1 GTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTAGTG
* * * * *** *
37202569 GTGAAGTAGATCAAAGAAAGCAGATCTCGTTTTCATGTAC-CG-G
1 GTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTAGTG
* ** * * * * *
37202612 CGTGAAGCAGATCAAAGATAGTAGGTCCTGTCCTCCTATA-TCAGTA
1 -GTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACT-AGTG
* * * * * * * *
37202658 GCGAAATGGATCAAATATA-CAGATTTTATCTCCCCATACTGGTG
1 GTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTAGTG
* * * ** * ***
37202702 GTGGAGTAGATCGAAGAAAATAAATCTTGTCTTCATGTACT-G-G
1 GTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTAGTG
37202745 CGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTAGTG
1 -GTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTAGTG
*
37202791 GTGAAGTAGATCGAAGATAC
1 GTGAAGTAGATCAAAGATAC
37202811 AAGTCTTATC
Statistics
Matches: 169, Mismatches: 64, Indels: 18
0.67 0.25 0.07
Matches are distributed among these distances:
43 2 0.01
44 88 0.52
45 78 0.46
46 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (45 bp):
GTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTAGTG
Found at i:37202811 original size:133 final size:132
Alignment explanation
Indices: 37202524--37202824 Score: 327
Period size: 133 Copynumber: 2.2 Consensus size: 132
37202514 ATGTATTGGC
* * *
37202524 GTGAAGTAGATCAGAGATACTAGATCTTACCTTCCCATACTGGTGGTGAAGTAGATCAAAGAAAG
1 GTGAAGTAGATCA-AGATAC-AGATCTTATCTCCCCATACTGGTGGTGAAGTAGATCAAAGAAAA
* * ** * *
37202589 CAGATCTCGTTTTCATGTACCGGCGTGAAGCAGATCAAAGATAGTAGGTCCTGTCCTCCTATATC
64 CAAATCTCGTCTTCATGTACCGGCGTGAAGCAGATCAAAGATACCAGATCCTGTCCTCCCATATC
37202654 AGTA
129 AGTA
* * * * * * * *
37202658 GCGAAATGGATCAAATATACAGATTTTATCTCCCCATACTGGTGGTGGAGTAGATCGAAGAAAAT
1 GTGAAGTAGATC-AAGATACAGATCTTATCTCCCCATACTGGTGGTGAAGTAGATCAAAGAAAAC
* * * * *
37202723 AAATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATA-CT
65 AAATCTCGTCTTCATGTACCGGCGTGAAGCAGATCAAAGATACCAGATCCTGTCCTCCCATATC-
*
37202787 AGTG
129 AGTA
37202791 GTGAAGTAGATCGAAGATACA-AGTCTTATCTCCC
1 GTGAAGTAGATC-AAGATACAGA-TCTTATCTCCC
37202825 TGAAGTTGCA
Statistics
Matches: 135, Mismatches: 29, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
132 2 0.01
133 118 0.87
134 14 0.10
135 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (132 bp):
GTGAAGTAGATCAAGATACAGATCTTATCTCCCCATACTGGTGGTGAAGTAGATCAAAGAAAACA
AATCTCGTCTTCATGTACCGGCGTGAAGCAGATCAAAGATACCAGATCCTGTCCTCCCATATCAG
TA
Found at i:37202839 original size:89 final size:88
Alignment explanation
Indices: 37202666--37202848 Score: 190
Period size: 89 Copynumber: 2.1 Consensus size: 88
37202656 TAGCGAAATG
* * * * * *
37202666 GATCAAATATACAGATTTTATCTCCCCATACTGGTGGTGGAGTAGATCGAAGAAAATAAATCTTG
1 GATCAAAGATACAGATCTTATCTCCCCATACTAGTGGTGAAGTAGATCGAAGAAAACAAATCTTA
* * *
37202731 TCTTCATGTACTGGCGTGAAGTA
66 TCTCCATGAACTGGCGTGAAGCA
* * * *
37202754 GATCAAAGATACCAGATCTTGTCTTCCCATACTAGTGGTGAAGTAGATCGAAG-ATACAAGTCTT
1 GATCAAAGATA-CAGATCTTATCTCCCCATACTAGTGGTGAAGTAGATCGAAGAAAACAAATCTT
* * *
37202818 ATCTCCCTGAAGTTGCAGTGAAGCA
65 ATCTCCATGAACTGGC-GTGAAGCA
37202843 GA-CAAA
1 GATCAAA
37202849 ACTAATCAAT
Statistics
Matches: 77, Mismatches: 16, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
88 32 0.42
89 45 0.58
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (88 bp):
GATCAAAGATACAGATCTTATCTCCCCATACTAGTGGTGAAGTAGATCGAAGAAAACAAATCTTA
TCTCCATGAACTGGCGTGAAGCA
Found at i:37206220 original size:43 final size:43
Alignment explanation
Indices: 37206126--37206309 Score: 235
Period size: 43 Copynumber: 4.3 Consensus size: 43
37206116 AGATTATGTT
* ** * * * *
37206126 TTTAGCGGCGTTTTTGCTAGAAGCGCCGCTAAAGAT-TTGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTC
* *
37206168 TTTAGCGGCGCTTGTGGGAAAAGCGCCGCGAAAGGTCGTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTC
* * *
37206211 ATTAGCGGCGTTTGTGGGGAAAGAGCCGCTAAAGGTCGTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTC
* *
37206254 TTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTC
37206297 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
37206310 TTTCCAGCGC
Statistics
Matches: 122, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 29 0.24
43 93 0.76
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTC
Found at i:37208428 original size:47 final size:47
Alignment explanation
Indices: 37208350--37208850 Score: 833
Period size: 47 Copynumber: 10.6 Consensus size: 47
37208340 CCCTTCGGGA
* * * * * * *
37208350 CTTATCACATTTATACACTTTCATATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37208397 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37208444 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37208491 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37208538 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37208587 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37208634 CTTATCACATATATACACTATCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37208681 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
37208730 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37208777 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37208824 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
37208851 TATTCAAATA
Statistics
Matches: 431, Mismatches: 17, Indels: 12
0.94 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 339 0.79
49 90 0.21
50 1 0.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37208606 original size:143 final size:141
Alignment explanation
Indices: 37208350--37208850 Score: 840
Period size: 143 Copynumber: 3.5 Consensus size: 141
37208340 CCCTTCGGGA
* * * * * * * *
37208350 CTTATCACATTTATACACTTTCATATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
37208415 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
37208480 GGCCATTAGGC
131 GGCCATTAGGC
*
37208491 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
37208556 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
*
37208621 TCGGCTATTAGGC
129 TCGGCCATTAGGC
*
37208634 CTTATCACATATATACACTATCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
37208699 ACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
37208764 TCGGCCATTAGGC
129 TCGGCCATTAGGC
37208777 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
37208842 TTTCACATT
66 TTTCACATT
37208851 TATTCAAATA
Statistics
Matches: 343, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
141 67 0.20
143 276 0.80
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:37208684 original size:190 final size:191
Alignment explanation
Indices: 37208350--37208850 Score: 859
Period size: 190 Copynumber: 2.6 Consensus size: 191
37208340 CCCTTCGGGA
* * * * * *
37208350 CTTATCACAT-T-TATACACTTTCATATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
37208413 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
37208478 TCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTCGGC
131 TCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTCAGC
37208538 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
* *
37208603 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTATCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
37208668 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCAGC
131 TCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTCAGC
*
37208730 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
37208793 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
37208851 TATTCAAATA
Statistics
Matches: 296, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
188 10 0.03
189 1 0.00
190 240 0.81
192 45 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (191 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTCAGC
Found at i:37212941 original size:40 final size:40
Alignment explanation
Indices: 37212878--37213829 Score: 1823
Period size: 40 Copynumber: 23.8 Consensus size: 40
37212868 CCAGCATGAT
** * *
37212878 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
37212918 TGCTTTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37212958 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37212998 TGCTTTTCGGGACTTAGCCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213038 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213078 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213118 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213158 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213198 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213238 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213278 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213318 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213358 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213398 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213438 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213478 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213518 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213558 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213598 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213638 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213678 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213718 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213758 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37213798 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
37213830 CTCAATTCTC
Statistics
Matches: 898, Mismatches: 14, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 898 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:37214753 original size:51 final size:51
Alignment explanation
Indices: 37214697--37214796 Score: 191
Period size: 51 Copynumber: 2.0 Consensus size: 51
37214687 TAAGCAGTGT
37214697 CAACAGATAACAATCAAATTATAACATAGTTGTTCGTATTTTTATTTCAAA
1 CAACAGATAACAATCAAATTATAACATAGTTGTTCGTATTTTTATTTCAAA
*
37214748 CAACAGATAACAATCAAATTGTAACATAGTTGTTCGTATTTTTATTTCA
1 CAACAGATAACAATCAAATTATAACATAGTTGTTCGTATTTTTATTTCA
37214797 CTCTTCCTTC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (51 bp):
CAACAGATAACAATCAAATTATAACATAGTTGTTCGTATTTTTATTTCAAA
Found at i:37215145 original size:37 final size:37
Alignment explanation
Indices: 37215095--37215171 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
37215085 TTATTACGAA
* * *
37215095 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCGCCACACGAAGTCATCGG
*
37215132 GTCTTACCCGGACAAAATCGCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCGCCACACGAAGTCATCGG
37215169 GTC
1 GTC
37215172 GTAACACCCC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCGCCACACGAAGTCATCGG
Found at i:37216612 original size:40 final size:40
Alignment explanation
Indices: 37216566--37216701 Score: 166
Period size: 40 Copynumber: 3.4 Consensus size: 40
37216556 CTCGCACAAG
* * * * *
37216566 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
37216606 GCCTTCGGGACTTAGCCCAGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
37216646 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
37216687 GCCTTCGGGACTTAG
1 GCCTTCGGGACTTAG
37216702 TATGAACTTA
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.04
40 57 0.69
41 20 0.24
42 3 0.04
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:37219374 original size:42 final size:42
Alignment explanation
Indices: 37219326--37219462 Score: 157
Period size: 42 Copynumber: 3.3 Consensus size: 42
37219316 AAAGCTAAAT
* *
37219326 AGAAGCTCATGAGAGCTAAACGAAAACCCATAAGGGTTGAAC
1 AGAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTTGAAC
* * * * *
37219368 GGAAGCTCGTAAGATCTGAACGGAAACCCATAAGGGTTAAAC
1 AGAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTTGAAC
* * * * *
37219410 TGAAGCTCAAAAGAGTTGAACGAAAACCCATTAGGTTTGAAC
1 AGAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTTGAAC
*
37219452 AGAAACTCATA
1 AGAAGCTCATA
37219463 TGAGTTAACA
Statistics
Matches: 76, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 76 1.00
ACGTcount: A:0.42, C:0.18, G:0.23, T:0.18
Consensus pattern (42 bp):
AGAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTTGAAC
Found at i:37219380 original size:21 final size:21
Alignment explanation
Indices: 37219354--37219484 Score: 68
Period size: 21 Copynumber: 6.3 Consensus size: 21
37219344 AACGAAAACC
37219354 CATAAGGGTTGAACGGAAGCT
1 CATAAGGGTTGAACGGAAGCT
* * * *
37219375 CGTAA-GATCTGAACGGAAACC
1 CATAAGGGT-TGAACGGAAGCT
* *
37219396 CATAAGGGTTAAACTGAAGCT
1 CATAAGGGTTGAACGGAAGCT
* * * * *
37219417 CAAAAGAGTTGAACGAAAACC
1 CATAAGGGTTGAACGGAAGCT
* * * *
37219438 CATTAGGTTTGAACAGAAACT
1 CATAAGGGTTGAACGGAAGCT
* * *
37219459 CATATGAGTT-AACAGAAGCT
1 CATAAGGGTTGAACGGAAGCT
*
37219479 CGTAAG
1 CATAAG
37219485 AGCTAAACGG
Statistics
Matches: 77, Mismatches: 31, Indels: 5
0.68 0.27 0.04
Matches are distributed among these distances:
20 15 0.19
21 60 0.78
22 2 0.03
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.20
Consensus pattern (21 bp):
CATAAGGGTTGAACGGAAGCT
Found at i:37219579 original size:24 final size:24
Alignment explanation
Indices: 37219547--37219618 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
37219537 TACTTGGGTA
*
37219547 ATTTGTCATCAATTCATCATTTTC
1 ATTTATCATCAATTCATCATTTTC
37219571 ATTTATCATCAATTCATCATTTGT-
1 ATTTATCATCAATTCATCATTT-TC
* * *
37219595 ATTTACCGTCAATTCATCCTTTTC
1 ATTTATCATCAATTCATCATTTTC
37219619 CACATAACGA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
23 1 0.02
24 40 0.95
25 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.04, T:0.49
Consensus pattern (24 bp):
ATTTATCATCAATTCATCATTTTC
Found at i:37225612 original size:22 final size:21
Alignment explanation
Indices: 37225576--37225617 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
37225566 GCTGGTGAAG
* *
37225576 AGAAAGAAAGAGAAAGGAAAA
1 AGAAAAAAAGAGAAAAGAAAA
37225597 AGAAAAAAGAGAGAAAAGAAA
1 AGAAAAAA-AGAGAAAAGAAA
37225618 GGGAAAGGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (21 bp):
AGAAAAAAAGAGAAAAGAAAA
Found at i:37227031 original size:18 final size:18
Alignment explanation
Indices: 37226993--37227031 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
37226983 TGAACTCTAC
* * *
37226993 AATTCGAATAATTTAAGT
1 AATTCGAATAACTCAAAT
37227011 AATTCGAATAACTCAAAT
1 AATTCGAATAACTCAAAT
37227029 AAT
1 AAT
37227032 AGATTGGTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.33
Consensus pattern (18 bp):
AATTCGAATAACTCAAAT
Found at i:37227163 original size:18 final size:19
Alignment explanation
Indices: 37227126--37227179 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 19
37227116 GTTCCAATAT
* *
37227126 AATTCAAAATAATTTTTAAA
1 AATTCCAAAT-ATTTATAAA
37227146 AA-TCCAAATATTTATAAA
1 AATTCCAAATATTTATAAA
37227164 AATTCCAAA-ATTTATA
1 AATTCCAAATATTTATA
37227180 TTTTTTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 17 0.55
19 12 0.39
20 2 0.06
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (19 bp):
AATTCCAAATATTTATAAA
Found at i:37227165 original size:19 final size:18
Alignment explanation
Indices: 37227143--37227179 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
37227133 AATAATTTTT
37227143 AAAAATCCAAATATTTATA
1 AAAAATCCAAA-ATTTATA
*
37227162 AAAATTCCAAAATTTATA
1 AAAAATCCAAAATTTATA
37227180 TTTTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAAATCCAAAATTTATA
Found at i:37227344 original size:16 final size:17
Alignment explanation
Indices: 37227314--37227346 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
37227304 CTTTAAAAGA
37227314 GTTTTCAAATATATATG
1 GTTTTCAAATATATATG
*
37227331 GTTTT-AAATTTATATG
1 GTTTTCAAATATATATG
37227347 CTCTAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.52
Consensus pattern (17 bp):
GTTTTCAAATATATATG
Found at i:37228019 original size:16 final size:16
Alignment explanation
Indices: 37227985--37228037 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
37227975 ATGGCATCAG
37227985 TCATGCAATACTCAAT
1 TCATGCAATACTCAAT
*
37228001 TCATG-AATACATCATT
1 TCATGCAATAC-TCAAT
* *
37228017 TCATACCATACTCAAT
1 TCATGCAATACTCAAT
37228033 TCATG
1 TCATG
37228038 AGTATATAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 5 0.17
16 21 0.70
17 4 0.13
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.34
Consensus pattern (16 bp):
TCATGCAATACTCAAT
Found at i:37229206 original size:4 final size:4
Alignment explanation
Indices: 37229197--37229270 Score: 53
Period size: 4 Copynumber: 17.0 Consensus size: 4
37229187 TGTCTTTCTC
37229197 CTTT CTTT CTTT CCTTT -TTT -TTT CTTTT CTTT CTTT CCTTT CTGTTT
1 CTTT CTTT CTTT -CTTT CTTT CTTT C-TTT CTTT CTTT -CTTT C--TTT
*
37229244 CGTTT CGTTTT GTTT CTTT CTTT CTTT
1 C-TTT C--TTT CTTT CTTT CTTT CTTT
37229271 ATTCATTTAC
Statistics
Matches: 60, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
3 6 0.10
4 30 0.50
5 17 0.28
6 7 0.12
ACGTcount: A:0.00, C:0.22, G:0.05, T:0.73
Consensus pattern (4 bp):
CTTT
Found at i:37229244 original size:24 final size:24
Alignment explanation
Indices: 37229198--37229249 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37229188 GTCTTTCTCC
* * *
37229198 TTTCTTTCTTTCCTTTTTTTTTCT
1 TTTCTTTCTTTCCTTTCTGTTTCG
37229222 TTTCTTTCTTTCCTTTCTGTTTCG
1 TTTCTTTCTTTCCTTTCTGTTTCG
37229246 TTTC
1 TTTC
37229250 GTTTTGTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.00, C:0.23, G:0.04, T:0.73
Consensus pattern (24 bp):
TTTCTTTCTTTCCTTTCTGTTTCG
Found at i:37230303 original size:25 final size:25
Alignment explanation
Indices: 37230275--37230324 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
37230265 ATATAGTTTT
37230275 TATATTAT-TTATAAAGGTTATAATA
1 TATATTATATTAT-AAGGTTATAATA
*
37230300 TATATTATATTATAATGTTATAATA
1 TATATTATATTATAAGGTTATAATA
37230325 AAACAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (25 bp):
TATATTATATTATAAGGTTATAATA
Found at i:37233078 original size:20 final size:20
Alignment explanation
Indices: 37233055--37233092 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37233045 GCATGATTTG
*
37233055 TATATGTGAAATGATTTAAA
1 TATATATGAAATGATTTAAA
*
37233075 TATATATGAATTGATTTA
1 TATATATGAAATGATTTA
37233093 GAAAACTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (20 bp):
TATATATGAAATGATTTAAA
Found at i:37242702 original size:21 final size:19
Alignment explanation
Indices: 37242650--37242704 Score: 60
Period size: 21 Copynumber: 2.9 Consensus size: 19
37242640 CTTGTATAGT
*
37242650 TTTTCCTCTTTTCTTCTCA
1 TTTTCCTCTTTTCTTTTCA
*
37242669 TTTT--TCTTGTCTTTTACA
1 TTTTCCTCTTTTCTTTT-CA
37242687 TTTTCACTCTTTTCTTTT
1 TTTTC-CTCTTTTCTTTT
37242705 TCTCTCGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 9 0.31
18 6 0.21
19 4 0.14
21 10 0.34
ACGTcount: A:0.07, C:0.24, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTCCTCTTTTCTTTTCA
Found at i:37260143 original size:18 final size:17
Alignment explanation
Indices: 37260122--37260156 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37260112 TTATTATTAA
37260122 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
37260140 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
37260157 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:37260278 original size:144 final size:144
Alignment explanation
Indices: 37260105--37260453 Score: 671
Period size: 144 Copynumber: 2.4 Consensus size: 144
37260095 AATATAAAAT
* *
37260105 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAG
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAG
37260170 CAGAAATTTGTTTTGGTAAATTATTTTATTTAAATTTTAATAAGATTAATATCAATAATAAATAA
66 CAGAAATTTGTTTTGGTAAATTATTTTATTTAAATTTTAATAAGATTAATATCAATAATAAATAA
37260235 TTTAATCATATTTA
131 TTTAATCATATTTA
*
37260249 AACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAG
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAG
37260314 CAGAAATTTGTTTTGGTAAATTATTTTATTTAAATTTTAATAAGATTAATATCAATAATAAATAA
66 CAGAAATTTGTTTTGGTAAATTATTTTATTTAAATTTTAATAAGATTAATATCAATAATAAATAA
37260379 TTTAATCATATTTA
131 TTTAATCATATTTA
37260393 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
37260454 ATAAAATTCT
Statistics
Matches: 201, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
144 201 1.00
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (144 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAG
CAGAAATTTGTTTTGGTAAATTATTTTATTTAAATTTTAATAAGATTAATATCAATAATAAATAA
TTTAATCATATTTA
Found at i:37260287 original size:18 final size:17
Alignment explanation
Indices: 37260266--37260300 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37260256 TTATTATTTA
*
37260266 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37260284 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37260301 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37260294 original size:28 final size:27
Alignment explanation
Indices: 37260226--37260296 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
37260216 TAATATCAAT
* *
37260226 AATAAATAATTTAATCATATTTAAACAT
1 AATATATAATTTAAT-ATATTTAAACAA
* **
37260254 AAT-TATTATTTAATATATTTTAATTAA
1 AATATATAATTTAATATA-TTTAAACAA
37260281 AATATATAATTTAATA
1 AATATATAATTTAATA
37260297 AAATTCTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
26 3 0.09
27 18 0.51
28 14 0.40
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (27 bp):
AATATATAATTTAATATATTTAAACAA
Found at i:37260431 original size:18 final size:17
Alignment explanation
Indices: 37260410--37260444 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37260400 TTATTATTAA
*
37260410 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37260428 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37260445 TCTTAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37260490 original size:61 final size:61
Alignment explanation
Indices: 37260425--37260612 Score: 163
Period size: 61 Copynumber: 3.1 Consensus size: 61
37260415 TTTTAATTAA
*
37260425 AATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTCTATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTATATGAATTTACTCAAATCAT
* * * ** * * * * * *
37260486 AATATATGATACT-GTAAAATAT-AAAATAACAT--AATTATTAT-TAAATATAAT-ATAATTAA
1 AATATATAAT-TTAATAAAAT-TCTTAATAA-ATAAAATTCTTATATGAATTTACTCA-AATCAT
* * *
37260545 AATATATTATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTATATGAATTTACTCAAATCAT
37260606 AATATAT
1 AATATAT
37260613 GATTATAACT
Statistics
Matches: 92, Mismatches: 25, Indels: 20
0.67 0.18 0.15
Matches are distributed among these distances:
58 4 0.04
59 31 0.34
60 14 0.15
61 38 0.41
62 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTATATGAATTTACTCAAATCAT
Found at i:37260528 original size:120 final size:120
Alignment explanation
Indices: 37260393--37260615 Score: 392
Period size: 120 Copynumber: 1.9 Consensus size: 120
37260383 ATCATATTTA
* *
37260393 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAATAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAAATAA
*
37260458 AATTCTTCTATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAAAT
66 AATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAAAT
* *
37260513 AACATAATTATTATTAAATATAATATAATTAAAATATATTATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAAATAA
*
37260578 TATTCTTATATGAATTTACTCAAATCATAATATATGAT
66 AATTCTTATATGAATTTACTCAAATCATAATATATGAT
37260616 TATAACTAAT
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 97 1.00
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAAATAA
AATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAAAT
Found at i:37260627 original size:17 final size:16
Alignment explanation
Indices: 37260605--37260651 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
37260595 ACTCAAATCA
37260605 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
37260622 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
37260636 TAAATATATGATTTAA
1 T-AATATATGATTTAA
37260652 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:37260652 original size:17 final size:17
Alignment explanation
Indices: 37260624--37260657 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
37260614 ATTATAACTA
*
37260624 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
37260641 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
37260658 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:37264522 original size:15 final size:15
Alignment explanation
Indices: 37264502--37264532 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37264492 ATATTATGTA
*
37264502 TAATTGACGTAAAAT
1 TAATTGACCTAAAAT
37264517 TAATTGACCTAAAAT
1 TAATTGACCTAAAAT
37264532 T
1 T
37264533 TGAAGGTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (15 bp):
TAATTGACCTAAAAT
Found at i:37274524 original size:34 final size:34
Alignment explanation
Indices: 37274475--37274539 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
37274465 ACCTCACTTC
* *
37274475 TATCTTTTTCGTTTTTTCTTTTCACCATCTGTTT
1 TATCTTCTTCGTTTTTTCCTTTCACCATCTGTTT
*
37274509 TATCTTCTTCTTTTTTTCCTTTCACCATCTG
1 TATCTTCTTCGTTTTTTCCTTTCACCATCTG
37274540 ATTTGTTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.09, C:0.25, G:0.05, T:0.62
Consensus pattern (34 bp):
TATCTTCTTCGTTTTTTCCTTTCACCATCTGTTT
Found at i:37274662 original size:17 final size:17
Alignment explanation
Indices: 37274640--37274696 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
37274630 TCTTGAAAAC
37274640 AAAAAACCCAACACATT
1 AAAAAACCCAACACATT
* * **
37274657 AAAAAAACAAACA-AAC
1 AAAAAACCCAACACATT
*
37274673 AAAGAACCCAACACATT
1 AAAAAACCCAACACATT
37274690 CAAAAAA
1 -AAAAAA
37274697 TAAATAACAA
Statistics
Matches: 28, Mismatches: 10, Indels: 3
0.68 0.24 0.07
Matches are distributed among these distances:
16 11 0.39
17 12 0.43
18 5 0.18
ACGTcount: A:0.67, C:0.25, G:0.02, T:0.07
Consensus pattern (17 bp):
AAAAAACCCAACACATT
Found at i:37274673 original size:33 final size:35
Alignment explanation
Indices: 37274636--37274755 Score: 145
Period size: 33 Copynumber: 3.3 Consensus size: 35
37274626 AGAATCTTGA
*
37274636 AAACAAAAAACCCAACACATT-AAAAAAACA-AAC
1 AAACAAAAAACCCAACACATTCAAAAAAAAATAAC
*
37274669 AAACAAAGAACCCAACACATTCAAAAAATAAATAAC
1 AAACAAAAAACCCAACACATTCAAAAAA-AAATAAC
37274705 AAACAATAAAAAACCCAACACATTCAAAAAAATAAATAAC
1 AAAC---AAAAAACCCAACACATTC-AAAAAA-AAATAAC
*
37274745 AAACAATAAAC
1 AAACAAAAAAC
37274756 AACCCAGAAT
Statistics
Matches: 76, Mismatches: 4, Indels: 10
0.84 0.04 0.11
Matches are distributed among these distances:
33 20 0.26
34 6 0.08
35 2 0.03
36 7 0.09
37 6 0.08
39 17 0.22
40 18 0.24
ACGTcount: A:0.68, C:0.22, G:0.01, T:0.10
Consensus pattern (35 bp):
AAACAAAAAACCCAACACATTCAAAAAAAAATAAC
Found at i:37274706 original size:32 final size:33
Alignment explanation
Indices: 37274636--37274736 Score: 121
Period size: 39 Copynumber: 2.8 Consensus size: 33
37274626 AGAATCTTGA
37274636 AAACAAAAAACCCAACACATTAAAAAAACAAAC
1 AAACAAAAAACCCAACACATTAAAAAAACAAAC
* *
37274669 AAACAAAGAACCCAACACATTCAAAAAATAAATAAC
1 AAACAAAAAACCCAACACATT-AAAAAA-ACA-AAC
37274705 AAACAATAAAAAACCCAACACATTCAAAAAAA
1 AAAC---AAAAAACCCAACACATT-AAAAAAA
37274737 TAAATAACAA
Statistics
Matches: 59, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
33 20 0.34
34 6 0.10
35 2 0.03
36 7 0.12
38 1 0.02
39 23 0.39
ACGTcount: A:0.67, C:0.23, G:0.01, T:0.09
Consensus pattern (33 bp):
AAACAAAAAACCCAACACATTAAAAAAACAAAC
Found at i:37274735 original size:40 final size:39
Alignment explanation
Indices: 37274662--37274779 Score: 159
Period size: 40 Copynumber: 3.0 Consensus size: 39
37274652 ACATTAAAAA
37274662 AACAAACAA-ACAAAGAACCCAACACATTCAAAAAATAAAT
1 AACAAACAATA-AAA-AACCCAACACATTCAAAAAATAAAT
37274702 AACAAACAATAAAAAACCCAACACATTCAAAAAAATAAAT
1 AACAAACAATAAAAAACCCAACACATTC-AAAAAATAAAT
* * *
37274742 AACAAACAATAAACAACCCAGA-ATATTTAAAAAATAAA
1 AACAAACAATAAAAAACCCA-ACACATTCAAAAAATAAA
37274780 AAAAGAACCC
Statistics
Matches: 72, Mismatches: 3, Indels: 7
0.88 0.04 0.09
Matches are distributed among these distances:
39 24 0.33
40 46 0.64
41 2 0.03
ACGTcount: A:0.66, C:0.19, G:0.02, T:0.13
Consensus pattern (39 bp):
AACAAACAATAAAAAACCCAACACATTCAAAAAATAAAT
Found at i:37279731 original size:12 final size:12
Alignment explanation
Indices: 37279716--37279745 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
37279706 TCTTAGTCTC
*
37279716 CCTCTCCCTTTT
1 CCTCTCCCTCTT
37279728 CCTCTCCCTCTT
1 CCTCTCCCTCTT
37279740 CCTCTC
1 CCTCTC
37279746 TTCGTTCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (12 bp):
CCTCTCCCTCTT
Found at i:37282655 original size:108 final size:108
Alignment explanation
Indices: 37282466--37282667 Score: 377
Period size: 108 Copynumber: 1.9 Consensus size: 108
37282456 AGCTTTAAGA
*
37282466 GGATATTTGGCTGTTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGAT
1 GGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGAT
37282531 TTTCCAAACGCGAAATATTGCCTTATTTAAAAGTTTTAAAAAG
66 TTTCCAAACGCGAAATATTGCCTTATTTAAAAGTTTTAAAAAG
* *
37282574 GGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGAT
1 GGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGAT
37282639 TTTCCAAACGCGAAATATTGCCTTATTTA
66 TTTCCAAACGCGAAATATTGCCTTATTTA
37282668 GAAAAATTTT
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
108 91 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (108 bp):
GGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGAT
TTTCCAAACGCGAAATATTGCCTTATTTAAAAGTTTTAAAAAG
Found at i:37287117 original size:27 final size:27
Alignment explanation
Indices: 37287063--37287117 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
37287053 TTCTGTTGCT
* *
37287063 AATAAATATTCATATTACTATAGTAAA
1 AATAAATATTCATATTAATATACTAAA
* *
37287090 AATAAATTTTCA-ATTAATATACTGAA
1 AATAAATATTCATATTAATATACTAAA
37287116 AA
1 AA
37287118 GAAAAGAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (27 bp):
AATAAATATTCATATTAATATACTAAA
Found at i:37287150 original size:15 final size:16
Alignment explanation
Indices: 37287117--37287156 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
37287107 TATACTGAAA
* *
37287117 AGAAAAGAAAAGAATT
1 AGAAAAAAAAACAATT
37287133 AGAAAAAAAAACAA-T
1 AGAAAAAAAAACAATT
37287148 AGAAAAAAA
1 AGAAAAAAA
37287157 CCATATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.78, C:0.03, G:0.12, T:0.07
Consensus pattern (16 bp):
AGAAAAAAAAACAATT
Found at i:37287720 original size:46 final size:46
Alignment explanation
Indices: 37287670--37287817 Score: 104
Period size: 46 Copynumber: 3.1 Consensus size: 46
37287660 TTTTAAGAAA
37287670 AAAAATCAATTAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATT
1 AAAAATCAATTAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATT
* * * * * * **
37287716 AAAAATTATTTAAAAATCAGATAAGGGTTTAGAGTTA--AGGGT-TTTTAAGG
1 AAAAATCAATT--AAAT----T-AGGGTTTAGGGTTACTTGAGTAATTTAATT
* * *
37287766 AAAAATCAAATAAATTAGGGTTCAGGGTTACTTGAGTAAATTAATT
1 AAAAATCAATTAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATT
*
37287812 ATAAAT
1 AAAAAT
37287818 TTTTATAAAA
Statistics
Matches: 72, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
43 12 0.17
44 1 0.01
45 3 0.04
46 18 0.25
48 8 0.11
50 13 0.18
51 3 0.04
52 1 0.01
53 13 0.18
ACGTcount: A:0.43, C:0.04, G:0.18, T:0.35
Consensus pattern (46 bp):
AAAAATCAATTAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATT
Found at i:37287787 original size:96 final size:96
Alignment explanation
Indices: 37287670--37287891 Score: 306
Period size: 96 Copynumber: 2.3 Consensus size: 96
37287660 TTTTAAGAAA
* *
37287670 AAAAATCAATTAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATTAAAAATTATTTA-AAAA-T
1 AAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAATT-TTTATAAAACT
37287733 CAGATAAGGGTTTAGAG-TTAAGGGTTTTTAAGG
65 -AGATAAGGGTTTAGAGTTTAA-GGTTTTTAAGG
* * *
37287766 AAAAATCAAATAAATTAGGGTTCAGGGTTACTTGAGTAAATTAATTATAAATTTTTATAAAACTT
1 AAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAATTTTTATAAAACTA
* * *
37287831 GATTAGGGTTTAGTGTTTAAGGTTTTTAAGT
66 GATAAGGGTTTAGAGTTTAAGGTTTTTAAGG
*
37287862 AAAAACTCAAATAAATTAGGGTTTGGGGTT
1 AAAAA-TCAAATAAATTAGGGTTTAGGGTT
37287892 TAGGGTTACT
Statistics
Matches: 112, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
95 4 0.04
96 81 0.72
97 27 0.24
ACGTcount: A:0.39, C:0.04, G:0.19, T:0.37
Consensus pattern (96 bp):
AAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAATTTTTATAAAACTA
GATAAGGGTTTAGAGTTTAAGGTTTTTAAGG
Found at i:37288147 original size:125 final size:126
Alignment explanation
Indices: 37287924--37288339 Score: 672
Period size: 126 Copynumber: 3.3 Consensus size: 126
37287914 TTGTTAATTT
* * *
37287924 AAAGAAGCTCTCACGTGGACGCACTTTTACTACAGTAGCTCTTAAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGTAGAC
* * * *
37287989 GTTTCTGAGCAAATGGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTATTG
66 GTTTCTGAGCAAATAGTGTCAAAAAAGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* *
37288050 AAAGAAGCTCTCACGTGGACGCGCTTTTGCTACAGTAGCTCCT-AAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGTAGAC
*
37288114 GTTTCTGAGCAAATAGTGTCAAAAAAGCTTTAAGCAGGATGCTTTGTCAACAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAAAGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* * * *
37288175 AAAGAAGCTCCCACGTGGATGCACTTTTGCTACAGTTGCTACTGAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGTAGAC
*
37288240 GTTTCTGAGCAAATAGTGTCAAAAAAGCTTTAAGCAGGATGCTTTGTTAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAAAGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* *
37288301 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAATAGC
1 AAAGAAGCTCCCACGTGGACGCACTTTTGCTACAGTAGC
37288340 GTATGTTTGA
Statistics
Matches: 270, Mismatches: 19, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
125 115 0.43
126 155 0.57
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (126 bp):
AAAGAAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGTAGAC
GTTTCTGAGCAAATAGTGTCAAAAAAGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
Found at i:37292447 original size:11 final size:11
Alignment explanation
Indices: 37292433--37292525 Score: 107
Period size: 11 Copynumber: 8.5 Consensus size: 11
37292423 TCTTTTAAAT
37292433 AGAAATTTGAG
1 AGAAATTTGAG
*
37292444 AGAAAATTGAG
1 AGAAATTTGAG
*
37292455 AGGAATTTGAG
1 AGAAATTTGAG
**
37292466 AGGGATTTGAG
1 AGAAATTTGAG
*
37292477 AGGAATTTGAG
1 AGAAATTTGAG
*
37292488 AGGAATTTGAG
1 AGAAATTTGAG
*
37292499 AGAATATTAGAG
1 AGAA-ATTTGAG
37292511 AGAAA-TTGAG
1 AGAAATTTGAG
37292521 AGAAA
1 AGAAA
37292526 GGATTTAGTT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
10 9 0.12
11 54 0.74
12 10 0.14
ACGTcount: A:0.44, C:0.00, G:0.32, T:0.24
Consensus pattern (11 bp):
AGAAATTTGAG
Found at i:37292979 original size:15 final size:14
Alignment explanation
Indices: 37292949--37292988 Score: 55
Period size: 13 Copynumber: 2.8 Consensus size: 14
37292939 CAAACCATCT
37292949 TCTTTTTCTTTTTC
1 TCTTTTTCTTTTTC
37292963 TCTTTTT-TTTTTC
1 TCTTTTTCTTTTTC
37292976 TCTCTTCTTCTTT
1 TCT-TT-TTCTTT
37292989 AAACTTGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 9 0.39
14 9 0.39
15 2 0.09
16 3 0.13
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78
Consensus pattern (14 bp):
TCTTTTTCTTTTTC
Found at i:37297451 original size:6 final size:6
Alignment explanation
Indices: 37297440--37297468 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
37297430 CAAATAATCT
37297440 TTTTCC TTTTCC TTTTCC TTTTCC TTTTC
1 TTTTCC TTTTCC TTTTCC TTTTCC TTTTC
37297469 TTTCTTCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTCC
Found at i:37297899 original size:29 final size:29
Alignment explanation
Indices: 37297857--37297917 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
37297847 TTCATATTTA
*
37297857 ATTATCTATATTTAATCCTATAATAAATT
1 ATTATCTATATTTAATACTATAATAAATT
* * *
37297886 ATTA-CTATAATTTATTATTTTAATAAATT
1 ATTATCTAT-ATTTAATACTATAATAAATT
37297915 ATT
1 ATT
37297918 TAATATTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 4 0.15
29 23 0.85
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (29 bp):
ATTATCTATATTTAATACTATAATAAATT
Found at i:37311781 original size:101 final size:102
Alignment explanation
Indices: 37311666--37311850 Score: 248
Period size: 101 Copynumber: 1.8 Consensus size: 102
37311656 AAAGTGATGG
* * * * *
37311666 TCACGTGTGTAGTACTATGTGTAGGCTACCAAGTGTACCAGAATGAT-A-GGTCGCATGTGCAGT
1 TCACGTATGTAGTACTATGTGCAGGCTACCAAGTGTACC-GAATGATAATGGCCACATGTACAGT
37311729 ACTATGTGCAGGCTACTATGCGTACTGGATAGTTTCGA
65 ACTATGTGCAGGCTACTATGCGTACTGGATAGTTTCGA
* * * * * *
37311767 TCACGTATGTAGTACTATGTGCAGGCTACTATGTGTATCGGATGGTAATGGCCACATGTATAGTA
1 TCACGTATGTAGTACTATGTGCAGGCTACCAAGTGTACCGAATGATAATGGCCACATGTACAGTA
37311832 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
37311851 TGAACTGAAC
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
100 5 0.07
101 35 0.49
102 31 0.44
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (102 bp):
TCACGTATGTAGTACTATGTGCAGGCTACCAAGTGTACCGAATGATAATGGCCACATGTACAGTA
CTATGTGCAGGCTACTATGCGTACTGGATAGTTTCGA
Found at i:37311910 original size:45 final size:45
Alignment explanation
Indices: 37311859--37311947 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
37311849 TGTGAACTGA
* *
37311859 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
37311904 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
37311948 AGTATCTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
Found at i:37317635 original size:26 final size:25
Alignment explanation
Indices: 37317555--37317635 Score: 60
Period size: 26 Copynumber: 3.2 Consensus size: 25
37317545 TTCGATCAAG
37317555 TGTGTAATACTATGTGCAGGCTACTA
1 TGTGT-ATACTATGTGCAGGCTACTA
* * * *
37317581 CGTGTAT-CGAATG-GTAATGGCCAC-A
1 TGTGTATAC-TATGTG-CA-GGCTACTA
37317606 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTA-TACTATGTGCAGGCTACTA
37317632 TGTG
1 TGTG
37317636 AACAAAACAT
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
24 2 0.05
25 17 0.43
26 19 0.47
27 2 0.05
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (25 bp):
TGTGTATACTATGTGCAGGCTACTA
Found at i:37317729 original size:45 final size:46
Alignment explanation
Indices: 37317642--37317731 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 46
37317632 TGTGAACAAA
* * *
37317642 ACATCGTTGATTAGTAAGGTGGTTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAGGTGGTTTGCTATGTGCTGAATCCACCGG
37317688 ACATCATTGATTAATAAGGTGG-TTGCTATGTGCTGAATCCACCG
1 ACATCATTGATTAATAAGGTGGTTTGCTATGTGCTGAATCCACCG
37317732 AGTATCTGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 21 0.51
46 20 0.49
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (46 bp):
ACATCATTGATTAATAAGGTGGTTTGCTATGTGCTGAATCCACCGG
Found at i:37321572 original size:36 final size:36
Alignment explanation
Indices: 37321525--37321631 Score: 137
Period size: 36 Copynumber: 3.0 Consensus size: 36
37321515 GCAGAGTAGA
37321525 TTAAAGTTGAAGGCAACGAATCTTATCTTCCTGGCG
1 TTAAAGTTGAAGGCAACGAATCTTATCTTCCTGGCG
* * * *
37321561 TTAAAATTGAAGGCAGCGAATCTTATCTCCCTGGTG
1 TTAAAGTTGAAGGCAACGAATCTTATCTTCCTGGCG
*
37321597 TTAAAGCTG-AGGACAACGAATCTTAT-TTCCCTGGC
1 TTAAAGTTGAAGG-CAACGAATCTTATCTT-CCTGGC
37321632 TTTGCAGTGG
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
35 4 0.07
36 56 0.93
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (36 bp):
TTAAAGTTGAAGGCAACGAATCTTATCTTCCTGGCG
Found at i:37321714 original size:21 final size:21
Alignment explanation
Indices: 37321688--37321731 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
37321678 CTGGCGTTGT
*
37321688 AGTGGAATAGATTAAAGCTGA
1 AGTGGAACAGATTAAAGCTGA
*
37321709 AGTGGAACGGATTAAAGCTGA
1 AGTGGAACAGATTAAAGCTGA
37321730 AG
1 AG
37321732 GCAGCGAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.07, G:0.32, T:0.20
Consensus pattern (21 bp):
AGTGGAACAGATTAAAGCTGA
Found at i:37321789 original size:51 final size:51
Alignment explanation
Indices: 37321709--37322132 Score: 267
Period size: 51 Copynumber: 8.1 Consensus size: 51
37321699 TTAAAGCTGA
* * * *
37321709 AGTGGAACGGATTAAAGCTGAAGGCAGCGAATCCTATCTTCTTGGCATTAC
1 AGTGGAACAGATTAAAGCTGAAGGTAGCGAATCCTATCTCCCTGGCATTAC
* * * * * *
37321760 AGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTTGC
1 AGTGGAACAGATTAAAGCTGAAGGTAGCGAATCCTATCTCCCTGGCATTAC
* ** * * * * * *
37321811 AGCGGAGTAGA-TCAAGACTGAAGATAGTGAGTCGTATCTCCCTAGCATTAAAGC
1 AGTGGAACAGATTAAAG-CTGAAGGTAGCGAATCCTATCTCCCTGGCATT--A-C
* * * * * * *
37321865 TGAAGTGGAGCGGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTAGCGTTAT
1 ---AGTGGAACAGATTAAAGCTGAAGGTAGCGAATCCTATCTCCCTGGCATTAC
* * * * * * *
37321919 AGTGGAATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCTTGGCATTGC
1 AGTGGAACAGATTAAAGCTGAAGGTAGCGAATCCTATCTCCCTGGCATTAC
* * * * * * *
37321970 AGCGGAGCAGA-TCAAGACTGAAGATAGCGAATCGTATCTCCCTAGCATTAA
1 AGTGGAACAGATTAAAG-CTGAAGGTAGCGAATCCTATCTCCCTGGCATTAC
* * *
37322021 AGTTGAAGTTGAGCGGATTAAAGCTGAAGGTAGCGAATCCTATCTCCTTGGCATTAC
1 AG-T---G--GAACAGATTAAAGCTGAAGGTAGCGAATCCTATCTCCCTGGCATTAC
* * * * * *
37322078 AGTGGAATAAATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTAC
1 AGTGGAACAGATTAAAGCTGAAGGTAGCGAATCCTATCTCCCTGGCATTAC
37322129 AGTG
1 AGTG
37322133 AGCAGATCAA
Statistics
Matches: 279, Mismatches: 78, Indels: 32
0.72 0.20 0.08
Matches are distributed among these distances:
50 8 0.03
51 188 0.67
53 1 0.00
54 1 0.00
55 2 0.01
56 1 0.00
57 70 0.25
58 8 0.03
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (51 bp):
AGTGGAACAGATTAAAGCTGAAGGTAGCGAATCCTATCTCCCTGGCATTAC
Found at i:37321822 original size:123 final size:123
Alignment explanation
Indices: 37321597--37321822 Score: 339
Period size: 123 Copynumber: 1.8 Consensus size: 123
37321587 CTCCCTGGTG
* * *
37321597 TTAAAGCTGAGGACAACGAATCTTATTTCCCTGGCTTTGCAGTGGAACAGATTAAAGCTAAAGGT
1 TTAAAGCTGAGGACAACGAATCCTATTTCCCTGGCATTACAGTGGAACAGATTAAAGCTAAAGGT
* * *
37321662 AGTGAATCTTGTTTCCCTGGCGTTGTAGTGGAATAGATTAAAGCTGAAGTGGAACGGA
66 AGCGAATCTTGTTTCCCTGGCGTTGCAGCGGAATAGATTAAAGCTGAAGTGGAACGGA
* *
37321720 TTAAAGCTGAAGG-CAGCGAATCCTATCTT-CTTGGCATTACAGTGGAACAGATTAAAGCTAAAG
1 TTAAAGCTG-AGGACAACGAATCCTAT-TTCCCTGGCATTACAGTGGAACAGATTAAAGCTAAAG
*
37321783 GTAGCGAATCTTGTTTCCCTGGCGTTGCAGCGGAGTAGAT
64 GTAGCGAATCTTGTTTCCCTGGCGTTGCAGCGGAATAGAT
37321823 CAAGACTGAA
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
123 87 0.95
124 5 0.05
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (123 bp):
TTAAAGCTGAGGACAACGAATCCTATTTCCCTGGCATTACAGTGGAACAGATTAAAGCTAAAGGT
AGCGAATCTTGTTTCCCTGGCGTTGCAGCGGAATAGATTAAAGCTGAAGTGGAACGGA
Found at i:37321987 original size:159 final size:159
Alignment explanation
Indices: 37321698--37322153 Score: 752
Period size: 159 Copynumber: 2.9 Consensus size: 159
37321688 AGTGGAATAG
* *
37321698 ATTAAAGCTGAAGTGGAACGGATTAAAGCTGAAGGCAGCGAATCCTATCTTCTTGGCATTACAGT
1 ATTAAAGCTGAAGTGGAGCGGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCATTACAGT
* * *
37321763 GGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTTGCAGCGGAGTAGATCAAGA
66 GGAATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGCAGCGGAGCAGATCAAGA
* *
37321828 CTGAAGATAGTGAGTCGTATCTCCCTAGC
131 CTGAAGATAGCGAATCGTATCTCCCTAGC
* * *
37321857 ATTAAAGCTGAAGTGGAGCGGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTAGCGTTATAGT
1 ATTAAAGCTGAAGTGGAGCGGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCATTACAGT
*
37321922 GGAATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCTTGGCATTGCAGCGGAGCAGATCAAGA
66 GGAATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGCAGCGGAGCAGATCAAGA
37321987 CTGAAGATAGCGAATCGTATCTCCCTAGC
131 CTGAAGATAGCGAATCGTATCTCCCTAGC
* * *
37322016 ATTAAAGTTGAAGTTGAGCGGATTAAAGCTGAAGGTAGCGAATCCTATCTCCTTGGCATTACAGT
1 ATTAAAGCTGAAGTGGAGCGGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCATTACAGT
* * *
37322081 GGAATAAATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTACAG-TGAGCAGATCAAGA
66 GGAATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGCAGCGGAGCAGATCAAGA
37322145 CTGAAGATA
131 CTGAAGATA
37322154 ACAAACCTTA
Statistics
Matches: 276, Mismatches: 21, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
158 22 0.08
159 254 0.92
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (159 bp):
ATTAAAGCTGAAGTGGAGCGGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCATTACAGT
GGAATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGCAGCGGAGCAGATCAAGA
CTGAAGATAGCGAATCGTATCTCCCTAGC
Found at i:37322451 original size:138 final size:138
Alignment explanation
Indices: 37322203--37322451 Score: 324
Period size: 138 Copynumber: 1.8 Consensus size: 138
37322193 AAGATACCAA
* * ** * *
37322203 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCTTATCTCCCTAAAGTTGTA
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAACAAACTTATCTCCCTAAAGTTGCA
** *
37322268 GTAGAGCAGATTAAAATGATGAATCCTATACCTCTGAAGTTGCAGTAGGTCGGATTAAATCTACC
66 GTAGAGCAGATTAAAATGACCAATCCTATACCTCTGAACTTGCAGTAGGTCGGATTAAATCTACC
37322333 ATAACAAG
131 ATAACAAG
*
37322341 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAACAAACATTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAACAAAC-TTATCTCCCTAAAGTTGC
* * * *
37322406 AGTGGAGCAGGTTGAAGAT-ACCAAT-CT-TATCTCCTGAACTTGCAGT
65 AGTAGAGCAGATT-AAAATGACCAATCCTATACCT-CTGAACTTGCAGT
37322452 GGAGCAGATT
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
137 4 0.04
138 55 0.59
139 31 0.33
140 4 0.04
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (138 bp):
TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAACAAACTTATCTCCCTAAAGTTGCA
GTAGAGCAGATTAAAATGACCAATCCTATACCTCTGAACTTGCAGTAGGTCGGATTAAATCTACC
ATAACAAG
Found at i:37322459 original size:182 final size:182
Alignment explanation
Indices: 37322151--37322508 Score: 472
Period size: 182 Copynumber: 2.0 Consensus size: 182
37322141 AAGACTGAAG
** * * *
37322151 ATAACAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGATACCAATCTTATCTCCCTG
1 ATAACAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAACAAACTTATCTCCCTG
* ** * *
37322216 AAGTTGCAGTGGAGCAGATTGAAGCTATTAATCTTATCTCCCTAAAGTTGTAGTAGAGCAGATT-
66 AAGTTGCAGTGGAGCAGATTGAAGATACCAATCTTATCTCCCTAAACTTGCAGTAGAGCAGATTG
* *
37322280 AAAATGATGAATCCTATAC-CTCTGAAGTTGCAGTAG-GTCGGATTAAATCTACC
131 AAAAT-ATGAATCCTAT-CTCCCTGAAGTTGAAGTAGAG-CGGATTAAATCTACC
**
37322333 ATAACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAACAAACATTATCTCCCT
1 ATAACAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAACAAAC-TTATCTCCCT
* * *
37322398 GAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCT-CCTGAACTTGCAGTGGAGCAGATT
65 GAAGTTGCAGTGGAGCAGATTGAAGATACCAATCTTATCTCCCTAAACTTGCAGTAGAGCAGATT
** *
37322462 GAAGCTATTAATCCTATCTCCCTGAAGTTGAAGTAGAGCGGATTAAA
130 GAAAATATGAATCCTATCTCCCTGAAGTTGAAGTAGAGCGGATTAAA
37322509 ATGATTAATC
Statistics
Matches: 152, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
181 1 0.01
182 101 0.66
183 50 0.33
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (182 bp):
ATAACAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAACAAACTTATCTCCCTG
AAGTTGCAGTGGAGCAGATTGAAGATACCAATCTTATCTCCCTAAACTTGCAGTAGAGCAGATTG
AAAATATGAATCCTATCTCCCTGAAGTTGAAGTAGAGCGGATTAAATCTACC
Found at i:37322522 original size:44 final size:44
Alignment explanation
Indices: 37322146--37322505 Score: 314
Period size: 44 Copynumber: 8.0 Consensus size: 44
37322136 AGATCAAGAC
* * * *
37322146 TGAAGATAACAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGT
1 TGAAGATATC-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
*
37322191 TGAAGATACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
1 TGAAGATATCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * *
37322235 TGAAGCTATTAATCTTATCTCCCTAAAGTTGTAGTAGAGCAGAT
1 TGAAGATATCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * * *
37322279 T-AAAATGATGAATCCTATAC-CTCTGAAGTTGCAGTAGG-TCGGAT
1 TGAAGAT-ATCAATCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGAT
* * * *
37322323 TAAATCTACCATAACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGAT
1 T-GA---A-GATATCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * *
37322373 TGAAGATAACAAACATTATCTCCCTGAAGTTGCAGTGGAGCAGGT
1 TGAAGATATCAATC-TTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* *
37322418 TGAAGATACCAATCTTATCT-CCTGAACTTGCAGTGGAGCAGAT
1 TGAAGATATCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * * *
37322461 TGAAGCTATTAATCCTATCTCCCTGAAGTTGAAGTAGAGCGGAT
1 TGAAGATATCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
37322505 T
1 T
37322506 AAAATGATTA
Statistics
Matches: 256, Mismatches: 45, Indels: 29
0.78 0.14 0.09
Matches are distributed among these distances:
43 40 0.16
44 123 0.48
45 58 0.23
46 2 0.01
49 8 0.03
50 25 0.10
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
TGAAGATATCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
Found at i:37322541 original size:226 final size:227
Alignment explanation
Indices: 37322146--37322593 Score: 763
Period size: 226 Copynumber: 2.0 Consensus size: 227
37322136 AGATCAAGAC
* *
37322146 TGAAGATAACAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGATACCAATCTTATCT
1 TGAAGATAACAAACATTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCT
* * *
37322211 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCTTATCTCCCTAAAGTTGTAGTAGAGCA
66 CCCTGAACTTGCAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCCTAAAGTTGAAGTAGAGCA
*
37322276 GATTAAAATGATGAATCCTATACCTCTGAAGTTGCAGTAGGTCGGATTAAATCTACCATAACAAG
131 GATTAAAATGATGAATCCTATACCTCTGAAGTTGCAGTAGGTCGAATTAAATCTACCATAACAAG
*
37322341 TCTTATCTCCCTGAAGTTACAGTGGAGCAGAT
196 TCTTATCTCCCTAAAGTTACAGTGGAGCAGAT
37322373 TGAAGATAACAAACATTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCT
1 TGAAGATAACAAACATTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCT
* *
37322438 -CCTGAACTTGCAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAAGTTGAAGTAGAGCG
66 CCCTGAACTTGCAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCCTAAAGTTGAAGTAGAGCA
* *
37322502 GATTAAAATGATTAATCCTATACCTCTGAATTTGCAGTAGGTCGAATTAAATCTACCATAACAAG
131 GATTAAAATGATGAATCCTATACCTCTGAAGTTGCAGTAGGTCGAATTAAATCTACCATAACAAG
* **
37322567 TCTTATCTCTCTAAAGTTGTAGTGGAG
196 TCTTATCTCCCTAAAGTTACAGTGGAG
37322594 TAGACTGTAG
Statistics
Matches: 207, Mismatches: 14, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
226 144 0.70
227 63 0.30
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29
Consensus pattern (227 bp):
TGAAGATAACAAACATTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCT
CCCTGAACTTGCAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCCTAAAGTTGAAGTAGAGCA
GATTAAAATGATGAATCCTATACCTCTGAAGTTGCAGTAGGTCGAATTAAATCTACCATAACAAG
TCTTATCTCCCTAAAGTTACAGTGGAGCAGAT
Found at i:37322551 original size:44 final size:44
Alignment explanation
Indices: 37322468--37322552 Score: 102
Period size: 44 Copynumber: 1.9 Consensus size: 44
37322458 GATTGAAGCT
*
37322468 ATTAATCCTATCTCCCTGAAGTTGAAGTAGAGCGGATTAAAATG
1 ATTAATCCTATCTCCCTGAAGTTGAAGTAGAGCGAATTAAAATG
* * *
37322512 ATTAATCCTATAC-CTCTGAATTTGCAGTAG-GTCGAATTAAA
1 ATTAATCCTAT-CTCCCTGAAGTTGAAGTAGAG-CGAATTAAA
37322553 TCTACCATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
43 1 0.03
44 33 0.94
45 1 0.03
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (44 bp):
ATTAATCCTATCTCCCTGAAGTTGAAGTAGAGCGAATTAAAATG
Found at i:37322688 original size:44 final size:44
Alignment explanation
Indices: 37322624--37322707 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 44
37322614 TTATCATATC
* *
37322624 AAACCTTATCTTTCTGAAGTTACAATAGAGCAGGTTGAAGTACT
1 AAACCTTATCTTCCTAAAGTTACAATAGAGCAGGTTGAAGTACT
* *
37322668 AAACCTTATCTTCCTAAAGTTGCAGTAGAGCAGGTTGAAG
1 AAACCTTATCTTCCTAAAGTTACAATAGAGCAGGTTGAAG
37322708 AAAAAAAGTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (44 bp):
AAACCTTATCTTCCTAAAGTTACAATAGAGCAGGTTGAAGTACT
Done.