Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 118 of 203
Found at i:37322736 original size:45 final size:44
Alignment explanation
Indices: 37322649--37322775 Score: 128
Period size: 45 Copynumber: 2.8 Consensus size: 44
37322639 GAAGTTACAA
* ** * * *
37322649 TAGAGCAGGTTGAAGTACTAAACCTTATCTTCCTAAAGTTGCAG
1 TAGAGCAGGTTGAAGAAAAAAATCTTATCTCCCTAAACTTGCAG
*
37322693 TAGAGCAGGTTGAAGAAAAAAAGTCTTATCTCCCTGAACTTGCAG
1 TAGAGCAGGTTGAAGAAAAAAA-TCTTATCTCCCTAAACTTGCAG
* ** * *
37322738 TGGAGCAGACTGAAGATAGAAAATCTTATTTCCCTAAA
1 TAGAGCAGGTTGAAGA-AAAAAATCTTATCTCCCTAAA
37322776 GTTGTAGTGG
Statistics
Matches: 68, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
44 19 0.28
45 44 0.65
46 5 0.07
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (44 bp):
TAGAGCAGGTTGAAGAAAAAAATCTTATCTCCCTAAACTTGCAG
Found at i:37322785 original size:45 final size:45
Alignment explanation
Indices: 37322672--37322797 Score: 139
Period size: 45 Copynumber: 2.8 Consensus size: 45
37322662 AGTACTAAAC
* *
37322672 CTTATCTT-CCTAAAGTTGCAGTAGAGCAGGTTGAAGAAAAAAAGT
1 CTTAT-TTCCCTAAAGTTGCAGTGGAGCAGATTGAAGAAAAAAAGT
* * * * *
37322717 CTTATCTCCCTGAACTTGCAGTGGAGCAGACTGAAGATAGAAAA-T
1 CTTATTTCCCTAAAGTTGCAGTGGAGCAGATTGAAGA-AAAAAAGT
* *
37322762 CTTATTTCCCTAAAGTTGTAGTGGAGTAGATTGAAG
1 CTTATTTCCCTAAAGTTGCAGTGGAGCAGATTGAAG
37322798 CCATTAATCC
Statistics
Matches: 66, Mismatches: 13, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
44 1 0.02
45 60 0.91
46 5 0.08
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (45 bp):
CTTATTTCCCTAAAGTTGCAGTGGAGCAGATTGAAGAAAAAAAGT
Found at i:37322854 original size:44 final size:45
Alignment explanation
Indices: 37322768--37322873 Score: 108
Period size: 44 Copynumber: 2.4 Consensus size: 45
37322758 AAATCTTATT
* * * * * * *
37322768 TCCCTAAAGTTGTAGTGGAGTAGATTGAAGCCATTAATCCTAT-C
1 TCCCTGAAGTTGTAGTAGAGAAGATTAAAACCATGAAGCCTATAC
*
37322812 TCCCTGAAGTTGTAGTAGAGAAGATTAAAACGATGAAGCCTATAC
1 TCCCTGAAGTTGTAGTAGAGAAGATTAAAACCATGAAGCCTATAC
* *
37322857 -CTCTGAAGTTGCAGTAG
1 TCCCTGAAGTTGTAGTAG
37322874 GTCTGATTAA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 50 0.98
45 1 0.02
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (45 bp):
TCCCTGAAGTTGTAGTAGAGAAGATTAAAACCATGAAGCCTATAC
Found at i:37328134 original size:17 final size:18
Alignment explanation
Indices: 37328108--37328141 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
37328098 ATTAATCATT
37328108 TTTTTCTTT-CCCTTAGC
1 TTTTTCTTTCCCCTTAGC
*
37328125 TTTTTGTTTCCCCTTAG
1 TTTTTCTTTCCCCTTAG
37328142 AGGACAAGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.06, C:0.26, G:0.09, T:0.59
Consensus pattern (18 bp):
TTTTTCTTTCCCCTTAGC
Found at i:37329526 original size:19 final size:19
Alignment explanation
Indices: 37329502--37329540 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
37329492 TTTTTGGTTT
37329502 TTAAATGAATAAACCTCTA
1 TTAAATGAATAAACCTCTA
37329521 TTAAATGAATAAACCTCTA
1 TTAAATGAATAAACCTCTA
37329540 T
1 T
37329541 CTCTAACCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.33
Consensus pattern (19 bp):
TTAAATGAATAAACCTCTA
Found at i:37330562 original size:18 final size:18
Alignment explanation
Indices: 37330539--37330577 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
37330529 GGGCTGCACA
37330539 GAAGCGTGAGCCCTACAC
1 GAAGCGTGAGCCCTACAC
37330557 GAAGCGTGAGCCCTACAC
1 GAAGCGTGAGCCCTACAC
37330575 GAA
1 GAA
37330578 CATATGGGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.31, G:0.28, T:0.10
Consensus pattern (18 bp):
GAAGCGTGAGCCCTACAC
Found at i:37337401 original size:27 final size:28
Alignment explanation
Indices: 37337292--37337441 Score: 205
Period size: 27 Copynumber: 5.4 Consensus size: 28
37337282 GAGATTGGCG
* * * * *
37337292 CTAAGTGTGCGGGTTTAAATTGTACAACA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
37337321 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
37337349 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
37337377 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
37337404 CTAAGTGTGCGAG-TTGATTATATAACA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
37337431 CTGAGTGTGCG
1 CTAAGTGTGCG
37337442 GACTTAATAT
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 50 0.45
28 47 0.42
29 15 0.13
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:37337407 original size:55 final size:56
Alignment explanation
Indices: 37337292--37337441 Score: 214
Period size: 55 Copynumber: 2.7 Consensus size: 56
37337282 GAGATTGGCG
* * * * *
37337292 CTAAGTGTGCGGGTTTAAATTGTACAACACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAACACTAAGTGTGCGAGTTTGATTATATAGCA
*
37337349 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAACACTAAGTGTGCGAGTTTGATTATATAGCA
*
37337404 CTAAGTGTGCGAG-TTGATTATATAACACTGAGTGTGCG
1 CTAAGTGTGCGAGTTTGATTATATAACACTAAGTGTGCG
37337442 GACTTAATAT
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
54 23 0.27
55 26 0.31
56 21 0.25
57 15 0.18
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAACACTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:37344215 original size:19 final size:19
Alignment explanation
Indices: 37344193--37344230 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
37344183 AGGCTCTCGG
*
37344193 GTCCAATTTACAATTTCAA
1 GTCCAATTTACAAGTTCAA
*
37344212 GTCCAATTTTCAAGTTCAA
1 GTCCAATTTACAAGTTCAA
37344231 TTACCTATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (19 bp):
GTCCAATTTACAAGTTCAA
Found at i:37344323 original size:18 final size:19
Alignment explanation
Indices: 37344283--37344324 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
37344273 AAAATATTAT
* *
37344283 ATTAATTTTAATTGATTTG
1 ATTAATTTTAATTGACTTC
*
37344302 ATTAA-TTTAATTTACTTC
1 ATTAATTTTAATTGACTTC
37344320 ATTAA
1 ATTAA
37344325 AATTAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.55
Consensus pattern (19 bp):
ATTAATTTTAATTGACTTC
Found at i:37346360 original size:17 final size:17
Alignment explanation
Indices: 37346333--37346379 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
37346323 GTCCCTATAC
37346333 TATTAATATAATGTTCTA
1 TATT-ATATAATGTTCTA
37346351 TATTATATAATGTTCTA
1 TATTATATAATGTTCTA
**
37346368 TAAAATATAATG
1 TATTATATAATG
37346380 CATAATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 23 0.85
18 4 0.15
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (17 bp):
TATTATATAATGTTCTA
Found at i:37346791 original size:19 final size:20
Alignment explanation
Indices: 37346763--37346801 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37346753 TAATTAAATT
37346763 TTAATGAAG-TAAAACATAA
1 TTAATGAAGTTAAAACATAA
*
37346782 TTAATTAAGTTAAAACATAA
1 TTAATGAAGTTAAAACATAA
37346802 ACTAATCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (20 bp):
TTAATGAAGTTAAAACATAA
Found at i:37349584 original size:17 final size:18
Alignment explanation
Indices: 37349546--37349610 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 18
37349536 CAAATTAGAA
*
37349546 ATTAATATAAAGATAATAAT
1 ATTAATA-AAA-ATATTAAT
*
37349566 ATTAATTAAAAT-TTAAT
1 ATTAATAAAAATATTAAT
* *
37349583 ATTCATAAAAATATTAAAC
1 ATTAATAAAAATATT-AAT
37349602 ATTAATAAA
1 ATTAATAAA
37349611 TAAAAAATAA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
17 14 0.38
18 4 0.11
19 13 0.35
20 6 0.16
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (18 bp):
ATTAATAAAAATATTAAT
Found at i:37349890 original size:16 final size:15
Alignment explanation
Indices: 37349864--37349893 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
37349854 AAACATAACA
37349864 ACTTTATTATTAATT
1 ACTTTATTATTAATT
37349879 ACTTTCATTATTAAT
1 ACTTT-ATTATTAAT
37349894 AAAATTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (15 bp):
ACTTTATTATTAATT
Found at i:37351792 original size:20 final size:20
Alignment explanation
Indices: 37351767--37351838 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
37351757 ATGTGCAAGC
* * *
37351767 AGAGGCTCCGAGGTGTGAAT
1 AGAGGCACCGAAGTGCGAAT
37351787 AGAGGCACCGAAGTGCGAAT
1 AGAGGCACCGAAGTGCGAAT
* * *
37351807 AGAGGCACCAAAGTGCAAAC
1 AGAGGCACCGAAGTGCGAAT
*
37351827 AGAGCCACCGAA
1 AGAGGCACCGAA
37351839 ATACAGAAAG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.36, C:0.22, G:0.32, T:0.10
Consensus pattern (20 bp):
AGAGGCACCGAAGTGCGAAT
Found at i:37355682 original size:44 final size:44
Alignment explanation
Indices: 37355634--37355876 Score: 267
Period size: 44 Copynumber: 5.6 Consensus size: 44
37355624 CCTCTATCTG
*
37355634 CTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTA
* * * * * *
37355678 CTCCATTACTGCTTAGGGAGATAAG-GCTG-ATATCTTCGATCAA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCA-ATTTTCAACCTA
*
37355721 CTCCACTACTGCTTAGGGAGATAAGATTTGCAATTTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTA
* * * * *** * * * *
37355765 CTCTACTGCTGCTCAGGGAGATAAG-GCTGGTGTCTTCGATCTG
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTA
37355808 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTA
* *
37355852 CTCCGCTACTGCTCAGGGAGATAAG
1 CTCCACTACTGCTTAGGGAGATAAG
37355877 GCTTGTGACT
Statistics
Matches: 156, Mismatches: 39, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
42 1 0.01
43 66 0.42
44 88 0.56
45 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTA
Found at i:37355725 original size:87 final size:87
Alignment explanation
Indices: 37355634--37355879 Score: 393
Period size: 87 Copynumber: 2.8 Consensus size: 87
37355624 CCTCTATCTG
* * *
37355634 CTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTTCAACCTACTCCATTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCACTACTGCTCAGGGAGA
37355699 TAAGGCTGATATCTTCGATCAA
66 TAAGGCTGATATCTTCGATCAA
* * *
37355721 CTCCACTACTGCTTAGGGAGATAAGATTTGCAATTTTCAACCTACTCTACTGCTGCTCAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCACTACTGCTCAGGGAGA
* * **
37355786 TAAGGCTGGTGTCTTCGATCTG
66 TAAGGCTGATATCTTCGATCAA
*
37355808 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCGCTACTGCTCAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCACTACTGCTCAGGGAGA
37355873 TAAGGCT
66 TAAGGCT
37355880 TGTGACTAAA
Statistics
Matches: 145, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 145 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (87 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCACTACTGCTCAGGGAGA
TAAGGCTGATATCTTCGATCAA
Found at i:37355743 original size:131 final size:130
Alignment explanation
Indices: 37355474--37355748 Score: 322
Period size: 131 Copynumber: 2.1 Consensus size: 130
37355464 CAAAACATCG
* * *
37355474 GGGAGATAGGATTCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAAGTT
1 GGGAGATAAGATTCACTGTCCTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGAAAGTT
* * ** * *
37355539 TCAACCTACTCCGCTGCTGCTCAGGGAGATAAGGCTTGTGACTTAAATCTGCTTCCTTACTCCTG
66 TCAACCTACTCCACTACTGCTCAGGGAGATAAGGCTTGTGACTTAAATCAACTTCCCTACTCCTA
* * * *
37355604 GGGAAGATAAGATTCGCTGTCCTCTATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATT
1 GGG-AGATAAGATTCACTGTCCTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGAAAGT
* * **
37355669 TTCAACCTACTCCATTACTGCTTAGGGAGATAAGGC-TGAT-ATCTTCGATCAAC-TCCACTACT
65 TTCAACCTACTCCACTACTGCTCAGGGAGATAAGGCTTG-TGA-CTTAAATCAACTTCC-CTACT
*
37355731 GCTTA
127 -CCTA
37355736 GGGAGATAAGATT
1 GGGAGATAAGATT
37355749 TGCAATTTTC
Statistics
Matches: 122, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
130 9 0.07
131 108 0.89
132 5 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (130 bp):
GGGAGATAAGATTCACTGTCCTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGAAAGTT
TCAACCTACTCCACTACTGCTCAGGGAGATAAGGCTTGTGACTTAAATCAACTTCCCTACTCCTA
Found at i:37356124 original size:44 final size:44
Alignment explanation
Indices: 37356076--37356781 Score: 377
Period size: 44 Copynumber: 16.5 Consensus size: 44
37356066 TTTTAATCCA
* * *
37356076 CTCCACTGTAATCTCAAGGAAATAGGATTACTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
* **
37356120 CTCCACTGTAATCT-TGGGAGATAAGATTTTTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
* * ** * *
37356163 CTCCACTGTAA-CTTCAGGGAGATAATATTTGAAAT-TATTCAGTCTA
1 CTCCACTGTAATC-TCAGGGAGATAAGA-TT--ACTGGCTTCAATCTG
* * * * *
37356209 TTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATTCGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
* * * * *** *
37356250 CTCTACTGTAATTTCAGAGAGATAAGA-TCCTTTATTTTAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTAC-TGGCTTCAATCTG
* * * *
37356294 CTGCACTGCAATCTCAGGGA-ATAGGATTACTGGCTTTAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
*
37356337 CTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
* ** *
37356381 CTCCACTGTAACCTCAGGGAGATAAGA-T--T--CTTCGGTCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
* * * * * *
37356420 CTCCATTGTAATCTCAGGGAGATAAGA--CCT-GATGCGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
* * * * *** * *
37356461 TTCTACTGTAATTTCAGAGAGATAAGATT-CTTTATTTTAATCCG
1 CTCCACTGTAATCTCAGGGAGATAAGATTAC-TGGCTTCAATCTG
* * * * *
37356505 CTCCACTGTAATATCAGGGAAATAGGATTACTGGCTTTAATCCG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
* ** * *
37356549 CTTCGTTGTAATCTCAGGAAGATAAGATTTCTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
* * * * *
37356593 CTCCACTGTAACCTCAAGAAGATAAGA-T--T--CTTCAGTCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
* * * * * * *
37356632 TTCCCCTGTAATCTCAGGGAGATAAGA--CCT-GATGCGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
* * * * * *** *
37356673 CTCTACTGTAATTTTAGAGAGATAAGA-TCCTTTATTTTAAT-TCG
1 CTCCACTGTAATCTCAGGGAGATAAGATTAC-TGGCTTCAATCT-G
* * *
37356717 CTCCATTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
***
37356761 CTCTGTTGTAATCTCAGGGAG
1 CTCCACTGTAATCTCAGGGAG
37356782 GTAAAATCAG
Statistics
Matches: 506, Mismatches: 128, Indels: 56
0.73 0.19 0.08
Matches are distributed among these distances:
39 62 0.12
40 2 0.00
41 90 0.18
42 6 0.01
43 74 0.15
44 234 0.46
45 6 0.01
46 30 0.06
47 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (44 bp):
CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
Found at i:37356167 original size:87 final size:87
Alignment explanation
Indices: 37356076--37356781 Score: 369
Period size: 87 Copynumber: 8.2 Consensus size: 87
37356066 TTTTAATCCA
* * * *
37356076 CTCCACTGTAATCTCAAGGAAATAGGATTACTGGCTTCAATCTGCTCCACTGTAATCT-TGGGAG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAG
*
37356140 ATAAGATTTTTGGCTTCAATCTG
66 ATAAGATTTCT-GCTTCAATCTG
* * ** * **
37356163 CTCCACTGTAA-CTTCAGGGAGATAATATTTGAAAT-TATTCAGTCTATTCCACTGTAATCTCAG
1 CTCCACTGTAATC-TCAGGGAGATAAGA-TT--ACTGGCTTCAATCTGCTCCACTGTAATCTCAG
* * * *
37356226 GGAGATAAGA--CCTGATTCGATCTA
62 GGAGATAAGATTTCTGCTTCAATCTG
* * * * *** * * *
37356250 CTCTACTGTAATTTCAGAGAGATAAGA-TCCTTTATTTTAATCTGCTGCACTGCAATCTCAGGGA
1 CTCCACTGTAATCTCAGGGAGATAAGATTAC-TGGCTTCAATCTGCTCCACTGTAATCTCAGGGA
* * *
37356314 -ATAGGATTACTGGCTTTAATCTG
65 GATAAGATTTCT-GCTTCAATCTG
* *
37356337 CTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAG
** *
37356402 ATAAGA--T-T-CTTCGGTCTA
66 ATAAGATTTCTGCTTCAATCTG
* * * * * ** * * *
37356420 CTCCATTGTAATCTCAGGGAGATAAGA--CCT-GATGCGATCTATTCTACTGTAATTTCAGAGAG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAG
* ** * *
37356482 ATAAGATTCTTTATTTTAATCCG
66 ATAAGATT-TCTGCTTCAATCTG
* * * * * * ** *
37356505 CTCCACTGTAATATCAGGGAAATAGGATTACTGGCTTTAATCCGCTTCGTTGTAATCTCAGGAAG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAG
37356570 ATAAGATTTCTGGCTTCAATCTG
66 ATAAGATTTCT-GCTTCAATCTG
* * * * ** *
37356593 CTCCACTGTAACCTCAAGAAGATAAGA-T--T--CTTCAGTCTATTCCCCTGTAATCTCAGGGAG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAG
* * * * *
37356653 ATAAGA--CCTGATGCGATCTA
66 ATAAGATTTCTGCTTCAATCTG
* * * * * *** * *
37356673 CTCTACTGTAATTTTAGAGAGATAAGA-TCCTTTATTTTAAT-TCGCTCCATTGTAATCTCAGGG
1 CTCCACTGTAATCTCAGGGAGATAAGATTAC-TGGCTTCAATCT-GCTCCACTGTAATCTCAGGG
* * *
37356736 AAATAGGATTACTGGCTTCAATCTG
64 AGATAAGATTTCT-GCTTCAATCTG
***
37356761 CTCTGTTGTAATCTCAGGGAG
1 CTCCACTGTAATCTCAGGGAG
37356782 GTAAAATCAG
Statistics
Matches: 448, Mismatches: 140, Indels: 61
0.69 0.22 0.09
Matches are distributed among these distances:
80 57 0.13
81 4 0.01
83 62 0.14
84 8 0.02
85 79 0.18
86 3 0.01
87 115 0.26
88 87 0.19
89 20 0.04
90 13 0.03
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (87 bp):
CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAG
ATAAGATTTCTGCTTCAATCTG
Found at i:37356436 original size:39 final size:42
Alignment explanation
Indices: 37355981--37356781 Score: 363
Period size: 44 Copynumber: 18.7 Consensus size: 42
37355971 ATTTGAAATT
* * * * *
37355981 CTTCGATCTATTCCCCTGTAATCTCAAGGAGATAAGA-CCTG
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGATTCTG
* * * * * * *
37356022 ATGCAATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTA
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGAT--TCTG
* * * * * *
37356066 TTTTAATCCACTCCACTGTAATCTCAAGGAAATAGGATTACTGG
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGATT-CT-G
* * *
37356110 CTTCAATCTGCTCCACTGTAATCT-TGGGAGATAAGATTTTTGG
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGA-TTCT-G
* *
37356153 CTTCAATCTGCTCCACTGTAA-CTTCAGGGAGATAATATT-TG
1 CTTCAATCTACTCCACTGTAATC-TCAGGGAGATAAGATTCTG
* * * *
37356194 AAATTATTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGA-CCTG
1 -----CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGATTCTG
* * * * * * *
37356240 ATTCGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTA
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGAT--TCTG
* * * * * *
37356284 TTTTAATCTGCTGCACTGCAATCTCAGGGA-ATAGGATTACTGG
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGATT-CT-G
* *
37356327 CTTTAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTTCTGG
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGA-TTCT-G
* *
37356371 CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGA-T-T-
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGATTCTG
** * *
37356410 CTTCGGTCTACTCCATTGTAATCTCAGGGAGATAAGA-CCTG
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGATTCTG
* * * * * * * *
37356451 ATGCGATCTATTCTACTGTAATTTCAGAGAGATAAGATTCTTTA
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGATTC--TG
* * ** * * *
37356495 TTTTAATCCGCTCCACTGTAATATCAGGGAAATAGGATTACTGG
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGATT-CT-G
* ** * ** *
37356539 CTTTAATCCGCTTCGTTGTAATCTCAGGAAGATAAGATTTCTGG
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGA-TTCT-G
* * * *
37356583 CTTCAATCTGCTCCACTGTAACCTCAAGAAGATAAGA-T-T-
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGATTCTG
* * * *
37356622 CTTCAGTCTATTCCCCTGTAATCTCAGGGAGATAAGA-CCTG
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGATTCTG
* * * * * * * * *
37356663 ATGCGATCTACTCTACTGTAATTTTAGAGAGATAAGATCCTTTA
1 CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGAT--TCTG
* * * * * *
37356707 TTTTAAT-TCGCTCCATTGTAATCTCAGGGAAATAGGATTACTGG
1 CTTCAATCT-ACTCCACTGTAATCTCAGGGAGATAAGATT-CT-G
* ***
37356751 CTTCAATCTGCTCTGTTGTAATCTCAGGGAG
1 CTTCAATCTACTCCACTGTAATCTCAGGGAG
37356782 GTAAAATCAG
Statistics
Matches: 569, Mismatches: 152, Indels: 75
0.71 0.19 0.09
Matches are distributed among these distances:
39 62 0.11
40 2 0.00
41 119 0.21
42 8 0.01
43 72 0.13
44 267 0.47
45 6 0.01
46 32 0.06
47 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (42 bp):
CTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGATTCTG
Found at i:37356618 original size:212 final size:212
Alignment explanation
Indices: 37355978--37356781 Score: 1200
Period size: 212 Copynumber: 3.8 Consensus size: 212
37355968 AAGATTTGAA
* * *
37355978 ATTCTTC-GATCTATTCCCCTGTAATCTCAAGGAGATAAGACCTGATGCAATCTACTCTACTGTA
1 ATTCTTCAG-TCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTA
* *
37356042 ATTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAAGGAAATAGGATTAC
65 ATTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTAC
* *
37356107 TGGCTTCAATCTGCTCCACTGTAATCT-TGGGAGATAAGATTTTTGGCTTCAATCTGCTCCACTG
130 TGGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCCACTG
*
37356171 TAACTTCAGGGAGATAATATTTG
195 TAACCTCAGGGAGAT-A-A---G
* *
37356194 AAATTATTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATTCGATCTACTCTACTGT
1 --ATTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGT
* * *
37356259 AATTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTGCACTGCAATCTCAGGG-AATAGGATTA
64 AATTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTA
*
37356323 CTGGCTTTAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCCACT
129 CTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCCACT
37356388 GTAACCTCAGGGAGATAAG
194 GTAACCTCAGGGAGATAAG
* * * *
37356407 ATTCTTCGGTCTACTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTATTCTACTGTAA
1 ATTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAA
* *
37356472 TTTCAGAGAGATAAGATTCTTTATTTTAATCCGCTCCACTGTAATATCAGGGAAATAGGATTACT
66 TTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACT
* * * ** *
37356537 GGCTTTAATCCGCTTCGTTGTAATCTCAGGAAGATAAGATTTCTGGCTTCAATCTGCTCCACTGT
131 GGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCCACTGT
* *
37356602 AACCTCAAGAAGATAAG
196 AACCTCAGGGAGATAAG
*
37356619 ATTCTTCAGTCTATTCCCCTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAA
1 ATTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAA
* * *
37356684 TTTTAGAGAGATAAGATCCTTTATTTTAATTCGCTCCATTGTAATCTCAGGGAAATAGGATTACT
66 TTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACT
***
37356749 GGCTTCAATCTGCTCTGTTGTAATCTCAGGGAG
131 GGCTTCAATCTGCTCCACTGTAATCTCAGGGAG
37356782 GTAAAATCAG
Statistics
Matches: 536, Mismatches: 47, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
211 106 0.20
212 235 0.44
213 1 0.00
216 1 0.00
217 38 0.07
218 154 0.29
219 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (212 bp):
ATTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAA
TTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACT
GGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCCACTGT
AACCTCAGGGAGATAAG
Found at i:37374083 original size:19 final size:20
Alignment explanation
Indices: 37374059--37374106 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
37374049 TGCAAACTAA
*
37374059 AGTGAGCTAA-AACGAGCTT
1 AGTGAGCTAAGAACGAGCTC
*
37374078 AGTGAGCTAAGAATGAGCTC
1 AGTGAGCTAAGAACGAGCTC
*
37374098 ATTGAGCTA
1 AGTGAGCTA
37374107 GAGTTGAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (20 bp):
AGTGAGCTAAGAACGAGCTC
Found at i:37377115 original size:15 final size:15
Alignment explanation
Indices: 37377095--37377127 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
37377085 TCTCTTTTTC
*
37377095 TTCACTCATTTTGTT
1 TTCACTCACTTTGTT
37377110 TTCACTCACTTTGTT
1 TTCACTCACTTTGTT
37377125 TTC
1 TTC
37377128 TCCTCTCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.58
Consensus pattern (15 bp):
TTCACTCACTTTGTT
Found at i:37386379 original size:9 final size:9
Alignment explanation
Indices: 37386330--37386492 Score: 55
Period size: 9 Copynumber: 18.6 Consensus size: 9
37386320 TTTTGAAACT
*
37386330 TTTTTATGA
1 TTTTTATAA
37386339 TTTTTATAA
1 TTTTTATAA
*
37386348 TAATTTTACAA
1 T--TTTTATAA
*
37386359 -TTTTATTCA
1 TTTTTA-TAA
37386368 TTTTTATAA
1 TTTTTATAA
37386377 --TTTATAA
1 TTTTTATAA
**
37386384 TAATTAT-A
1 TTTTTATAA
*
37386392 TTGTT-T-A
1 TTTTTATAA
37386399 TTTTTATAA
1 TTTTTATAA
*
37386408 TTTTTTATGA
1 -TTTTTATAA
*
37386418 TTTTTATTAC
1 TTTTTA-TAA
*
37386428 TTTTCTACAAA
1 TTTT-TA-TAA
*
37386439 TTTTTAAAA
1 TTTTTATAA
37386448 GTTTTTA-AA
1 -TTTTTATAA
37386457 --TTT-T-A
1 TTTTTATAA
*
37386462 -TTTTACAA
1 TTTTTATAA
37386470 TTTTTAT-A
1 TTTTTATAA
37386478 TATTTTATAA
1 T-TTTTATAA
37386488 TTTTT
1 TTTTT
37386493 TAAATAATTA
Statistics
Matches: 118, Mismatches: 17, Indels: 38
0.68 0.10 0.22
Matches are distributed among these distances:
5 1 0.01
6 6 0.05
7 13 0.11
8 13 0.11
9 43 0.36
10 28 0.24
11 14 0.12
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:37386414 original size:10 final size:10
Alignment explanation
Indices: 37386399--37386494 Score: 54
Period size: 10 Copynumber: 9.6 Consensus size: 10
37386389 ATATTGTTTA
37386399 TTTTTATAAT
1 TTTTTATAAT
*
37386409 TTTTTATGA-
1 TTTTTATAAT
*
37386418 TTTTTATTACT
1 TTTTTA-TAAT
* * *
37386429 TTTCTACAAA
1 TTTTTATAAT
* *
37386439 TTTTTAAAAG
1 TTTTTATAAT
37386449 TTTTTA-AAT
1 TTTTTATAAT
* *
37386458 TTTATTTTACAA
1 TTT-TTATA-AT
37386470 TTTTTAT-AT
1 TTTTTATAAT
*
37386479 ATTTTATAAT
1 TTTTTATAAT
37386489 TTTTTA
1 TTTTTA
37386495 AATAATTATT
Statistics
Matches: 63, Mismatches: 17, Indels: 12
0.68 0.18 0.13
Matches are distributed among these distances:
9 18 0.29
10 32 0.51
11 9 0.14
12 4 0.06
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:37386482 original size:23 final size:22
Alignment explanation
Indices: 37386440--37386485 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
37386430 TTCTACAAAT
37386440 TTTTAAAAGTTTTTAAATTTTA
1 TTTTAAAAGTTTTTAAATTTTA
*
37386462 TTTTACAA-TTTTTATATATTTTA
1 TTTTAAAAGTTTTTA-A-ATTTTA
37386485 T
1 T
37386486 AATTTTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 8 0.38
23 7 0.33
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (22 bp):
TTTTAAAAGTTTTTAAATTTTA
Found at i:37389280 original size:42 final size:41
Alignment explanation
Indices: 37389231--37389324 Score: 143
Period size: 41 Copynumber: 2.3 Consensus size: 41
37389221 GCTGGTGTGA
*
37389231 TATATCAGGCTAAAAGCCTAGCAGGCGTAGTGCCGGTGAATT
1 TATATCAGGCT-AAAGCCTAGCAGGCGTAGAGCCGGTGAATT
* *
37389273 TATATCAGACTAAAGCCTAGCAGGCGTAGAGCTGGTGAATT
1 TATATCAGGCTAAAGCCTAGCAGGCGTAGAGCCGGTGAATT
*
37389314 TTTATCAGGCT
1 TATATCAGGCT
37389325 TATGCCAAGC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 37 0.79
42 10 0.21
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (41 bp):
TATATCAGGCTAAAGCCTAGCAGGCGTAGAGCCGGTGAATT
Found at i:37393118 original size:46 final size:46
Alignment explanation
Indices: 37393061--37393165 Score: 129
Period size: 46 Copynumber: 2.3 Consensus size: 46
37393051 CACTAGCAGG
* **
37393061 AAGCCTACTAGGCACAAGGCTCAATACATTACAATACACTGGCATA
1 AAGCCTACTAGGCACAAGGATCAATACATTACAATACACCAGCATA
* ** * *
37393107 AAGCCTTCTAGGCACAAGGATTGATACATTATAGTACACCAGCATA
1 AAGCCTACTAGGCACAAGGATCAATACATTACAATACACCAGCATA
*
37393153 AAGCCTGCTAGGC
1 AAGCCTACTAGGC
37393166 TCAAAGCCCG
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (46 bp):
AAGCCTACTAGGCACAAGGATCAATACATTACAATACACCAGCATA
Found at i:37403396 original size:25 final size:25
Alignment explanation
Indices: 37403349--37403415 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 25
37403339 TACCAATTTT
* **
37403349 AGCTCTTATGAGCTTACTGATACTC
1 AGCTCGTATGAGCTTACCAATACTC
*
37403374 AGCTCGTATGAGCTTACCAATACTT
1 AGCTCGTATGAGCTTACCAATACTC
* * *
37403399 ATCTTGTATGATCTTAC
1 AGCTCGTATGAGCTTAC
37403416 TGCTATTCAG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.37
Consensus pattern (25 bp):
AGCTCGTATGAGCTTACCAATACTC
Found at i:37405390 original size:16 final size:16
Alignment explanation
Indices: 37405355--37405395 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
37405345 CCCGCATAAA
37405355 CAAA-AAATATAAAAC
1 CAAATAAATATAAAAC
37405370 CAAATAAAT-TAAAAC
1 CAAATAAATATAAAAC
37405385 CAAAATAAATA
1 C-AAATAAATA
37405396 AAGTCCAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.71, C:0.12, G:0.00, T:0.17
Consensus pattern (16 bp):
CAAATAAATATAAAAC
Found at i:37405397 original size:15 final size:14
Alignment explanation
Indices: 37405363--37405397 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
37405353 AACAAAAAAT
37405363 ATAAAACCAAATAA
1 ATAAAACCAAATAA
37405377 ATTAAAACCAAAATAA
1 A-TAAAACC-AAATAA
37405393 ATAAA
1 ATAAA
37405398 GTCCAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.05
15 11 0.58
16 7 0.37
ACGTcount: A:0.71, C:0.11, G:0.00, T:0.17
Consensus pattern (14 bp):
ATAAAACCAAATAA
Found at i:37405843 original size:66 final size:66
Alignment explanation
Indices: 37405732--37405862 Score: 235
Period size: 66 Copynumber: 2.0 Consensus size: 66
37405722 AAAAAGGCCT
*
37405732 CGAATTTATGTATTTTAACACACACGAATGAATCAAAAGATATTGGAAAGAAATCAGTTCAAATA
1 CGAATTTATGTATTTTAACACACACGAATGAATCAAAAGAGATTGGAAAGAAATCAGTTCAAATA
37405797 C
66 C
* *
37405798 CGAATTTATGTATTTTAACCCACACGAATGAATCAAGAGAGATTGGAAAGAAATCAGTTCAAATA
1 CGAATTTATGTATTTTAACACACACGAATGAATCAAAAGAGATTGGAAAGAAATCAGTTCAAATA
37405863 TCGGGCATTC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (66 bp):
CGAATTTATGTATTTTAACACACACGAATGAATCAAAAGAGATTGGAAAGAAATCAGTTCAAATA
C
Found at i:37406636 original size:23 final size:22
Alignment explanation
Indices: 37406605--37406648 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
37406595 TCATTTTTTA
37406605 ATTTATTTA-AGTATTTATATTTC
1 ATTTATTTATA-TATTTA-ATTTC
*
37406628 ATTTTTTTATATATTTAATTT
1 ATTTATTTATATATTTAATTT
37406649 TTAAATTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 14 0.74
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (22 bp):
ATTTATTTATATATTTAATTTC
Found at i:37406742 original size:24 final size:24
Alignment explanation
Indices: 37406710--37406770 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
37406700 ATTAATATTG
* *
37406710 TTTAAATTTATCGTATATTATTAT
1 TTTAAATTTATCATATATAATTAT
37406734 TTTAAATTTATCATATATAATTAT
1 TTTAAATTTATCATATATAATTAT
*
37406758 TTTAAGTTT-TCAT
1 TTTAAATTTATCAT
37406771 GCATTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 4 0.12
24 30 0.88
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.57
Consensus pattern (24 bp):
TTTAAATTTATCATATATAATTAT
Found at i:37406779 original size:23 final size:24
Alignment explanation
Indices: 37406710--37406790 Score: 85
Period size: 24 Copynumber: 3.5 Consensus size: 24
37406700 ATTAATATTG
* *
37406710 TTTAAATTTATCGTATATTATTAT
1 TTTAAATTTATCATACATTATTAT
* *
37406734 TTTAAATTTATCATATATAATTAT
1 TTTAAATTTATCATACATTATTAT
* *
37406758 TTTAAGTTT-TCATGCATTATTA-
1 TTTAAATTTATCATACATTATTAT
*
37406780 TTCAAATTTAT
1 TTTAAATTTAT
37406791 TATGTATTAT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
22 7 0.15
23 11 0.23
24 30 0.62
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.56
Consensus pattern (24 bp):
TTTAAATTTATCATACATTATTAT
Found at i:37408433 original size:131 final size:131
Alignment explanation
Indices: 37408199--37408450 Score: 504
Period size: 131 Copynumber: 1.9 Consensus size: 131
37408189 CTACAATATG
37408199 TTAGTTGATTTTTATTTATTTATATATGGTGTTGGACTTAAAATGTATTTTATGTATAAAGATAT
1 TTAGTTGATTTTTATTTATTTATATATGGTGTTGGACTTAAAATGTATTTTATGTATAAAGATAT
37408264 AATGATCTATAAGTTTTTGATGTATTTATGTGTATAGGTGCTTATAACTAAAGTGAAATGACATA
66 AATGATCTATAAGTTTTTGATGTATTTATGTGTATAGGTGCTTATAACTAAAGTGAAATGACATA
37408329 A
131 A
37408330 TTAGTTGATTTTTATTTATTTATATATGGTGTTGGACTTAAAATGTATTTTATGTATAAAGATAT
1 TTAGTTGATTTTTATTTATTTATATATGGTGTTGGACTTAAAATGTATTTTATGTATAAAGATAT
37408395 AATGATCTATAAGTTTTTGATGTATTTATGTGTATAGGTGCTTATAACTAAAGTGA
66 AATGATCTATAAGTTTTTGATGTATTTATGTGTATAGGTGCTTATAACTAAAGTGA
37408451 GAAGGCATAC
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
131 121 1.00
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.47
Consensus pattern (131 bp):
TTAGTTGATTTTTATTTATTTATATATGGTGTTGGACTTAAAATGTATTTTATGTATAAAGATAT
AATGATCTATAAGTTTTTGATGTATTTATGTGTATAGGTGCTTATAACTAAAGTGAAATGACATA
A
Found at i:37408505 original size:131 final size:131
Alignment explanation
Indices: 37408219--37408483 Score: 345
Period size: 131 Copynumber: 2.0 Consensus size: 131
37408209 TTTATTTATT
** *
37408219 TATATATGGTGTTGGACTTAAAATGTATTTTATGTATAAAGATATAATGATCTATAAGTTTTTGA
1 TATATATGAAGTTGCACTTAAAATGTATTTTATGTATAAAGATATAATGATCTATAAGTTTTTGA
* * * * ** *
37408284 TGTATTTATGTGTATAGGTGCTTATAACTAAAGTGAAATGACATAATTAGTTGATTTTTATTTAT
66 TGTATTTATGTGTATAGGTGCTTATAACTAAAGTGAAATGACATAATTAATTGAGTATGACATAG
*
37408349 T
131 C
** *
37408350 TATATATGGTGTTGGACTTAAAATGTATTTTATGTATAAAGATATAATGATCTATAAGTTTTTGA
1 TATATATGAAGTTGCACTTAAAATGTATTTTATGTATAAAGATATAATGATCTATAAGTTTTTGA
* *
37408415 TGTATTTATGTGTATAGGTGCTTATAACTAAAGTGAGAA-GGCATACTTCAATATG-GTATGACA
66 TGTATTTATGTGTATAGGTGCTTATAACTAAAGTGA-AATGACATAATT-AAT-TGAGTATGACA
37408478 TAGC
128 TAGC
37408482 TA
1 TA
37408484 AGTTGAAGTA
Statistics
Matches: 121, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
131 108 0.89
132 11 0.09
133 2 0.02
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (131 bp):
TATATATGAAGTTGCACTTAAAATGTATTTTATGTATAAAGATATAATGATCTATAAGTTTTTGA
TGTATTTATGTGTATAGGTGCTTATAACTAAAGTGAAATGACATAATTAATTGAGTATGACATAG
C
Found at i:37409254 original size:19 final size:19
Alignment explanation
Indices: 37409230--37409268 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
37409220 TACATTATCG
37409230 CTATGCATTCCTACAATCA
1 CTATGCATTCCTACAATCA
37409249 CTATGCATTCCTACAATCA
1 CTATGCATTCCTACAATCA
37409268 C
1 C
37409269 CATGTATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.33, G:0.05, T:0.31
Consensus pattern (19 bp):
CTATGCATTCCTACAATCA
Found at i:37409301 original size:3 final size:3
Alignment explanation
Indices: 37409293--37410108 Score: 1632
Period size: 3 Copynumber: 272.0 Consensus size: 3
37409283 ATCATTAGTT
37409293 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37409341 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37409389 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37409437 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37409485 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37409533 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37409581 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37409629 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37409677 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37409725 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37409773 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37409821 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37409869 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37409917 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37409965 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37410013 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37410061 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37410109 CAACAACACT
Statistics
Matches: 813, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 813 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:37411408 original size:10 final size:10
Alignment explanation
Indices: 37411395--37411420 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
37411385 AATAATAAAA
37411395 AAAGTTCTTT
1 AAAGTTCTTT
37411405 AAAGTTCTTT
1 AAAGTTCTTT
37411415 AAAGTT
1 AAAGTT
37411421 TTTTTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.46
Consensus pattern (10 bp):
AAAGTTCTTT
Found at i:37416129 original size:27 final size:27
Alignment explanation
Indices: 37416061--37416129 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
37416051 TTACGAAGTT
* * * *
37416061 TGCCAAAAAGGCATTCCTTTCATATTT
1 TGCCATAAAGGCGTTCCTTCCATATTG
**
37416088 TGCCATAAATACGTTCCTTCCATATTG
1 TGCCATAAAGGCGTTCCTTCCATATTG
37416115 TGCCATAAAGGCGTT
1 TGCCATAAAGGCGTT
37416130 AATCAGGCCA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (27 bp):
TGCCATAAAGGCGTTCCTTCCATATTG
Found at i:37418637 original size:22 final size:21
Alignment explanation
Indices: 37418591--37418646 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
37418581 AAAAATAATA
* *
37418591 TTATTTTAATAGATTTAATAT
1 TTATTTTAATAGATTTAAAAC
37418612 TTATTTTAATTTA-ATTTAAAAC
1 TTATTTTAA--TAGATTTAAAAC
*
37418634 TTATCTT-ATAGAT
1 TTATTTTAATAGAT
37418647 AAATATTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 2 0.07
20 2 0.07
21 10 0.34
22 13 0.45
23 2 0.07
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.55
Consensus pattern (21 bp):
TTATTTTAATAGATTTAAAAC
Found at i:37421918 original size:37 final size:37
Alignment explanation
Indices: 37421868--37421938 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
37421858 CATGACAATA
* *
37421868 GCTCATAAGAGCTAATCCACCCGATAACACGCCAGAT
1 GCTCATAAGAGCTAATCCAACCGAAAACACGCCAGAT
37421905 GCTCATAAGAGCTAATCCAACCGAAAACACGCCA
1 GCTCATAAGAGCTAATCCAACCGAAAACACGCCA
37421939 AAACAAGGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.38, C:0.32, G:0.15, T:0.14
Consensus pattern (37 bp):
GCTCATAAGAGCTAATCCAACCGAAAACACGCCAGAT
Found at i:37429983 original size:22 final size:22
Alignment explanation
Indices: 37429955--37429997 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
37429945 ATAATAGGAC
37429955 ATTCAATATAAC-ATTTCAATAA
1 ATTCAATATAACTA-TTCAATAA
*
37429977 ATTCAATCTAACTATTCAATA
1 ATTCAATATAACTATTCAATA
37429998 TTCATTCAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (22 bp):
ATTCAATATAACTATTCAATAA
Found at i:37431194 original size:14 final size:14
Alignment explanation
Indices: 37431156--37431195 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
37431146 TTTGTTTTTC
37431156 TTTT-ACTT-TAACA
1 TTTTAACTTATAA-A
37431169 TTTTAA-TTATAAA
1 TTTTAACTTATAAA
37431182 TTTTAACTTATAAA
1 TTTTAACTTATAAA
37431196 ATCACATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (14 bp):
TTTTAACTTATAAA
Found at i:37436634 original size:16 final size:17
Alignment explanation
Indices: 37436608--37436641 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
37436598 AGAAATTTTT
*
37436608 TTATCAAAAATATAAAA
1 TTATCAAAAATAAAAAA
37436625 TTAT-AAAAATAAAAAA
1 TTATCAAAAATAAAAAA
37436641 T
1 T
37436642 ACTTAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
TTATCAAAAATAAAAAA
Found at i:37436849 original size:16 final size:18
Alignment explanation
Indices: 37436830--37436866 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
37436820 TTTGAGAAAA
37436830 AAATT-CTA-TCAATTAT
1 AAATTCCTATTCAATTAT
*
37436846 AAATTCCTATTGAATTAT
1 AAATTCCTATTCAATTAT
37436864 AAA
1 AAA
37436867 ACAATTATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 5 0.28
17 3 0.17
18 10 0.56
ACGTcount: A:0.46, C:0.11, G:0.03, T:0.41
Consensus pattern (18 bp):
AAATTCCTATTCAATTAT
Found at i:37440716 original size:29 final size:28
Alignment explanation
Indices: 37440683--37440738 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
37440673 TTAAGGGGTC
* *
37440683 AAAATTAAATTATATCTTTTATAATAGTA
1 AAAATAAAATTATATCATTT-TAATAGTA
*
37440712 AAAATAAAATTTTATCATTTTAATAGT
1 AAAATAAAATTATATCATTTTAATAGT
37440739 CTATATCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.45
Consensus pattern (28 bp):
AAAATAAAATTATATCATTTTAATAGTA
Found at i:37451398 original size:23 final size:20
Alignment explanation
Indices: 37451371--37451424 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 20
37451361 TTCTAAGTCG
37451371 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT--ACA-CT
37451394 ATATTCATTATTCAATTACACT
1 ATATTCA--ATTCAATTACACT
37451416 -TATTCAATT
1 ATATTCAATT
37451425 TCCCGATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
19 3 0.10
21 6 0.21
22 2 0.07
23 10 0.34
25 8 0.28
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (20 bp):
ATATTCAATTCAATTACACT
Found at i:37451538 original size:44 final size:45
Alignment explanation
Indices: 37451461--37451548 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 45
37451451 CAGATACTCA
* *
37451461 GTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTTCG
1 GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTTCG
37451506 GTGGAATCAGCACATA-CAACCACCTTACTAATCAATGATGTTC
1 GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTTC
37451549 AGTTCACATA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 26 0.63
45 15 0.37
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (45 bp):
GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTTCG
Found at i:37451615 original size:51 final size:50
Alignment explanation
Indices: 37451557--37451739 Score: 188
Period size: 51 Copynumber: 3.6 Consensus size: 50
37451547 TCAGTTCACA
* * * *
37451557 TAGTAGCCTGCACATAGCACTACAAATGTGATCATTACCATCTGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGATCA-TACCATCCGGTACACG
* * * * ** *
37451608 TAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATCCGGTATGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGATC-ATACCATCCGGTACACG
* * * *
37451659 TAGTAGCCTGCACATAGTACTACACATGCGA-CCTATCATTCCGGTACAGG
1 TAGTAGCCTGCACATAGTACTACACATGTGATCATACCA-TCCGGTACACG
*
37451709 TAGTAGCCTGCACATAGTACTACACACGTGA
1 TAGTAGCCTGCACATAGTACTACACATGTGA
37451740 CCATCACTTT
Statistics
Matches: 106, Mismatches: 24, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
49 2 0.02
50 37 0.35
51 66 0.62
52 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGATCATACCATCCGGTACACG
Found at i:37451733 original size:101 final size:102
Alignment explanation
Indices: 37451555--37451739 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 102
37451545 GTTCAGTTCA
* * *
37451555 CATAGTAGCCTGCACATAGCACTACAAATGTGATCATTACCATCTGATACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGCACTACAAATGCGATCACTACCATCCGATACACGTAGTAGCCTACA
37451620 CATAGTACTACACACGTGATCGAAACTATCCGGTATG
66 CATAGTACTACACACGTGATCGAAACTATCCGGTATG
* * * * * *
37451657 CATAGTAGCCTGCACATAGTACTACACATGCGA-C-CTATCATTCCGGTACAGGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGCACTACAAATGCGATCACTACCA-TCCGATACACGTAGTAGCCTAC
37451720 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
37451740 CCATCACTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.53
102 30 0.41
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGCACTACAAATGCGATCACTACCATCCGATACACGTAGTAGCCTACA
CATAGTACTACACACGTGATCGAAACTATCCGGTATG
Found at i:37455913 original size:22 final size:24
Alignment explanation
Indices: 37455858--37455914 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 24
37455848 GTCTATATCT
*
37455858 TCTTCATCTTCACCTTGACCCCCCG
1 TCTTCATCTTCA-CTCGACCCCCCG
* *
37455883 TATTCATCTTCA-TCGA-CCCTCG
1 TCTTCATCTTCACTCGACCCCCCG
37455905 TCTTCATCTT
1 TCTTCATCTT
37455915 TATCTCCACC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 14 0.50
23 3 0.11
25 11 0.39
ACGTcount: A:0.14, C:0.40, G:0.07, T:0.39
Consensus pattern (24 bp):
TCTTCATCTTCACTCGACCCCCCG
Found at i:37463276 original size:61 final size:61
Alignment explanation
Indices: 37463181--37463364 Score: 305
Period size: 61 Copynumber: 3.0 Consensus size: 61
37463171 GGAAGTGTAC
* * *
37463181 TGGTTAAGTGATCCTTAACTATCCTTTAAGTCTCTAGTTCGAACCCTTATATGCCTATTAT
1 TGGTTAAGTGCTCCTTAACTATCCTTTAAGTCTCTAGTTTGAACCCTTATGTGCCTATTAT
*
37463242 TGGTTAAGTGCTCCTTAACAATCCTTTAAGTCTCTAGTTTGAACCCTTATGTGCCTATTAT
1 TGGTTAAGTGCTCCTTAACTATCCTTTAAGTCTCTAGTTTGAACCCTTATGTGCCTATTAT
* * *
37463303 TGGTTAAATGCTCTTTAACTATCTTTTAAGTCTCTAGTTTGAACCCTTATGTGCCTATTAT
1 TGGTTAAGTGCTCCTTAACTATCCTTTAAGTCTCTAGTTTGAACCCTTATGTGCCTATTAT
37463364 T
1 T
37463365 TTTATTTAAA
Statistics
Matches: 115, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 115 1.00
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.43
Consensus pattern (61 bp):
TGGTTAAGTGCTCCTTAACTATCCTTTAAGTCTCTAGTTTGAACCCTTATGTGCCTATTAT
Found at i:37474160 original size:45 final size:45
Alignment explanation
Indices: 37474083--37474336 Score: 309
Period size: 45 Copynumber: 5.7 Consensus size: 45
37474073 CATCTTACAG
* * *
37474083 AGCATCTTACAGCTACAG-TCTTACTCATTTTTATCATGACGCCAT
1 AGCATCTTTCAGCTA-TGTTCTTACTCATTTTTATCATGACACCAT
* * * *
37474128 AGCATATTTCAGCTATGTTCTTGCTCACTTTTATCATGACGCCAT
1 AGCATCTTTCAGCTATGTTCTTACTCATTTTTATCATGACACCAT
* *
37474173 AGCATCTTTCAGCTATGGTCTTACTAATTTTTATCATGACACCAT
1 AGCATCTTTCAGCTATGTTCTTACTCATTTTTATCATGACACCAT
* * * * *
37474218 AGCAT-ATTCAACTATGGTT-TTGCTCACTTTTATCATGACACCGT
1 AGCATCTTTCAGCTAT-GTTCTTACTCATTTTTATCATGACACCAT
* *
37474262 AGCATCTTTCAGCTATGGTCTTACTTATTTTTATCATGACACCAT
1 AGCATCTTTCAGCTATGTTCTTACTCATTTTTATCATGACACCAT
*
37474307 AGCATCTTTCAGCTATG-TCTTAATCATTTT
1 AGCATCTTTCAGCTATGTTCTTACTCATTTT
37474337 AGGCTTATAA
Statistics
Matches: 178, Mismatches: 27, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
44 48 0.27
45 130 0.73
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.40
Consensus pattern (45 bp):
AGCATCTTTCAGCTATGTTCTTACTCATTTTTATCATGACACCAT
Found at i:37474275 original size:89 final size:90
Alignment explanation
Indices: 37474083--37474324 Score: 362
Period size: 89 Copynumber: 2.7 Consensus size: 90
37474073 CATCTTACAG
* ** * * *
37474083 AGCATCTTACAGCTACAGTCTTACTCATTTTTATCATGACGCCATAGCATATTTCAGCTATGTTC
1 AGCATCTTTCAGCTATGGTCTTACTAATTTTTATCATGACACCATAGCATATTTCAACTATGTTC
*
37474148 TTGCTCACTTTTATCATGACGCCAT
66 TTGCTCACTTTTATCATGACACCAT
37474173 AGCATCTTTCAGCTATGGTCTTACTAATTTTTATCATGACACCATAGCATA-TTCAACTATGGTT
1 AGCATCTTTCAGCTATGGTCTTACTAATTTTTATCATGACACCATAGCATATTTCAACTAT-GTT
*
37474237 -TTGCTCACTTTTATCATGACACCGT
65 CTTGCTCACTTTTATCATGACACCAT
* * *
37474262 AGCATCTTTCAGCTATGGTCTTACTTATTTTTATCATGACACCATAGCATCTTTCAGCTATGT
1 AGCATCTTTCAGCTATGGTCTTACTAATTTTTATCATGACACCATAGCATATTTCAACTATGT
37474325 CTTAATCATT
Statistics
Matches: 139, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
89 82 0.59
90 57 0.41
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (90 bp):
AGCATCTTTCAGCTATGGTCTTACTAATTTTTATCATGACACCATAGCATATTTCAACTATGTTC
TTGCTCACTTTTATCATGACACCAT
Found at i:37475230 original size:8 final size:8
Alignment explanation
Indices: 37475219--37475257 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
37475209 TCTCTCTCTC
*
37475219 TATATATA
1 TATATATT
37475227 TATATATT
1 TATATATT
*
37475235 TATTTATT
1 TATATATT
37475243 TATATATT
1 TATATATT
37475251 TATATAT
1 TATATAT
37475258 CTGAGCAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATATT
Found at i:37477921 original size:17 final size:15
Alignment explanation
Indices: 37477899--37477932 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
37477889 GAGGGCAACG
37477899 GGTGAGGGAGAGAGGGA
1 GGTGAGGGA-A-AGGGA
37477916 GGTGAGGGAAAGGGA
1 GGTGAGGGAAAGGGA
37477931 GG
1 GG
37477933 GGGACTTCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 1 0.06
17 9 0.53
ACGTcount: A:0.29, C:0.00, G:0.65, T:0.06
Consensus pattern (15 bp):
GGTGAGGGAAAGGGA
Found at i:37481283 original size:24 final size:24
Alignment explanation
Indices: 37481256--37481302 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
37481246 TAAGAACATG
37481256 ACAACACCAAAGTACATAATCAAA
1 ACAACACCAAAGTACATAATCAAA
** *
37481280 ACAACACGGAAGTGCATAATCAA
1 ACAACACCAAAGTACATAATCAA
37481303 GATAGCACCG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.53, C:0.23, G:0.11, T:0.13
Consensus pattern (24 bp):
ACAACACCAAAGTACATAATCAAA
Found at i:37485907 original size:37 final size:37
Alignment explanation
Indices: 37485857--37485932 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
37485847 GAATCCGTTT
*
37485857 GTGCATTAATTCACTTGTAACGTTCATGGTATGTTGG
1 GTGCATTAATTCACTTCTAACGTTCATGGTATGTTGG
* *
37485894 GTGCATTAATTCACTTCTGACGTTCATGGTATTTTGG
1 GTGCATTAATTCACTTCTAACGTTCATGGTATGTTGG
37485931 GT
1 GT
37485933 ACCTAAATAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.20, C:0.14, G:0.24, T:0.42
Consensus pattern (37 bp):
GTGCATTAATTCACTTCTAACGTTCATGGTATGTTGG
Found at i:37487751 original size:40 final size:41
Alignment explanation
Indices: 37487698--37487801 Score: 120
Period size: 41 Copynumber: 2.6 Consensus size: 41
37487688 AACACACCAG
* * * *
37487698 ATTGGCACCCAGTGCCTCATCGGAT-AATTCAAAGTATTAA
1 ATTGACACCCAGTGCCTCATCGAATAAATCCAAAGTAATAA
* *
37487738 ATTGACACTCAGTGCCTCATCGAATAAATCCGAAGTAATAA
1 ATTGACACCCAGTGCCTCATCGAATAAATCCAAAGTAATAA
* * *
37487779 ATTGAGACCCAATGGCTCATCGA
1 ATTGACACCCAGTGCCTCATCGA
37487802 CTCAAAGTCG
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
40 22 0.42
41 31 0.58
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (41 bp):
ATTGACACCCAGTGCCTCATCGAATAAATCCAAAGTAATAA
Found at i:37492808 original size:22 final size:22
Alignment explanation
Indices: 37492781--37492826 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
37492771 GAGATCAACA
37492781 AAAATA-TAAACACATACATATC
1 AAAATATTAAACACAT-CATATC
* *
37492803 AAAATATTAATCTCATCATATC
1 AAAATATTAAACACATCATATC
37492825 AA
1 AA
37492827 TCATCATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.54, C:0.17, G:0.00, T:0.28
Consensus pattern (22 bp):
AAAATATTAAACACATCATATC
Found at i:37496920 original size:33 final size:35
Alignment explanation
Indices: 37496883--37496959 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 35
37496873 TTTAATATGA
* *
37496883 AATTTAGTTTAATACTTAT-T-ATAGAATTTTATT
1 AATTTAATTTAATAATTATCTGATAGAATTTTATT
*
37496916 AATTTAATTTAATAATTATCGTGATAGTATTTTATT
1 AATTTAATTTAATAATTATC-TGATAGAATTTTATT
37496952 AATTTAAT
1 AATTTAAT
37496960 ATTAGAGTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
33 17 0.45
35 1 0.03
36 20 0.53
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (35 bp):
AATTTAATTTAATAATTATCTGATAGAATTTTATT
Found at i:37496972 original size:20 final size:18
Alignment explanation
Indices: 37496947--37496999 Score: 56
Period size: 20 Copynumber: 2.9 Consensus size: 18
37496937 TGATAGTATT
37496947 TTATTAATTTAATATTAGA
1 TTATTAATTTAATATTA-A
37496966 GTTATT-ATCTTAATATTAA
1 -TTATTAAT-TTAATATTAA
*
37496985 AT-TTAATTTAATATT
1 TTATTAATTTAATATT
37497000 TATCTTATAG
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 10 0.33
18 3 0.10
19 3 0.10
20 14 0.47
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (18 bp):
TTATTAATTTAATATTAA
Found at i:37512335 original size:13 final size:13
Alignment explanation
Indices: 37512317--37512341 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37512307 ATAAAAAATC
37512317 TGATTTCAATGTG
1 TGATTTCAATGTG
37512330 TGATTTCAATGT
1 TGATTTCAATGT
37512342 ACTTGTGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (13 bp):
TGATTTCAATGTG
Found at i:37513003 original size:18 final size:18
Alignment explanation
Indices: 37512980--37513031 Score: 63
Period size: 17 Copynumber: 3.0 Consensus size: 18
37512970 TGTATTGAAT
37512980 TAAAAAAATTTGAAAAAA
1 TAAAAAAATTTGAAAAAA
* *
37512998 TAAAAAAA-TTCAAAAGA
1 TAAAAAAATTTGAAAAAA
*
37513015 -ACAAAAATTTGAAAAAA
1 TAAAAAAATTTGAAAAAA
37513032 AAGTTTGAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 6 0.21
17 14 0.50
18 8 0.29
ACGTcount: A:0.71, C:0.04, G:0.06, T:0.19
Consensus pattern (18 bp):
TAAAAAAATTTGAAAAAA
Found at i:37514089 original size:21 final size:21
Alignment explanation
Indices: 37514065--37514105 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37514055 GAATGAAAAC
37514065 GAGA-AAAGAAAAAAAAGAAAT
1 GAGAGAAA-AAAAAAAAGAAAT
*
37514086 GAGAGAAAAAGAAAAAGAAA
1 GAGAGAAAAAAAAAAAGAAA
37514106 GTAAAAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (21 bp):
GAGAGAAAAAAAAAAAGAAAT
Found at i:37514116 original size:24 final size:23
Alignment explanation
Indices: 37514068--37514117 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
37514058 TGAAAACGAG
*
37514068 AAAAGAAAAAAAAGAAATGAGAGA
1 AAAAGAAAAAAAAGAAA-GAAAGA
37514092 AAAAGAAAAAGAAAGTAAA-AAAGA
1 AAAAGAAAAA-AAAG-AAAGAAAGA
37514116 AA
1 AA
37514118 TTGCAAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 16 0.70
25 4 0.17
26 3 0.13
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (23 bp):
AAAAGAAAAAAAAGAAAGAAAGA
Found at i:37517830 original size:20 final size:21
Alignment explanation
Indices: 37517805--37517843 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
37517795 TCAAACAAGC
37517805 AAATGAGCTCAA-TGAGCTGG
1 AAATGAGCTCAATTGAGCTGG
*
37517825 AAATGAGCTGAATTGAGCT
1 AAATGAGCTCAATTGAGCT
37517844 CAACGAGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATGAGCTCAATTGAGCTGG
Found at i:37519195 original size:13 final size:12
Alignment explanation
Indices: 37519177--37519232 Score: 51
Period size: 12 Copynumber: 4.4 Consensus size: 12
37519167 ATTTTCATAT
37519177 TTTTCTTTTTCAA
1 TTTTCTTTTTC-A
37519190 TTTTCTTTTCTTCA
1 TTTTC-TTT-TTCA
37519204 TTTTCTTTTTC-
1 TTTTCTTTTTCA
**
37519215 TCTCACTTTTTCA
1 T-TTTCTTTTTCA
37519228 TTTTC
1 TTTTC
37519233 NNNNNNNNNN
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
11 1 0.03
12 13 0.37
13 9 0.26
14 9 0.26
15 3 0.09
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTTCTTTTTCA
Found at i:37537625 original size:21 final size:21
Alignment explanation
Indices: 37537600--37537639 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
37537590 TCTTGACCTC
37537600 ACCATTTCATACCAATTCCAT
1 ACCATTTCATACCAATTCCAT
**
37537621 ACCATTTTGTACCAATTCC
1 ACCATTTCATACCAATTCC
37537640 CAAATACCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.33, G:0.03, T:0.35
Consensus pattern (21 bp):
ACCATTTCATACCAATTCCAT
Found at i:37540221 original size:20 final size:20
Alignment explanation
Indices: 37540196--37540240 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
37540186 GCGAAAATAC
*
37540196 AAAAGAAAAGAAAAATGAAA
1 AAAAGAAAAGAAAAATCAAA
*
37540216 AAAAG-AAAGAAAATTCAAA
1 AAAAGAAAAGAAAAATCAAA
37540235 AAAAGA
1 AAAAGA
37540241 GAATGAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.78, C:0.02, G:0.13, T:0.07
Consensus pattern (20 bp):
AAAAGAAAAGAAAAATCAAA
Found at i:37544574 original size:20 final size:21
Alignment explanation
Indices: 37544544--37544599 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
37544534 AATCTTGAAT
*
37544544 GAAATTGAGAGAAGAA-AAAAA
1 GAAA-TGAGAGAAAAAGAAAAA
37544565 GAAATGAGAGAAAAAGAAAAA
1 GAAATGAGAGAAAAAGAAAAA
* *
37544586 GAAATAAAAGAAAA
1 GAAATGAGAGAAAA
37544600 TGATGAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 10 0.32
21 21 0.68
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (21 bp):
GAAATGAGAGAAAAAGAAAAA
Found at i:37544594 original size:15 final size:14
Alignment explanation
Indices: 37544555--37544599 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
37544545 AAATTGAGAG
37544555 AAGAAAAAAAGAAA
1 AAGAAAAAAAGAAA
* *
37544569 TGAGAGAAAAAGAAA
1 -AAGAAAAAAAGAAA
37544584 AAGAAATAAAAGAAA
1 AAGAAA-AAAAGAAA
37544599 A
1 A
37544600 TGATGAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
14 4 0.16
15 21 0.84
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (14 bp):
AAGAAAAAAAGAAA
Found at i:37546370 original size:82 final size:82
Alignment explanation
Indices: 37546218--37546380 Score: 247
Period size: 82 Copynumber: 2.0 Consensus size: 82
37546208 TTGTGTCTGC
* * * *
37546218 AGGTCATTGAATTCGGCTACTTAATGGCTAAGGAGACATGCATTTAAGGTGCTGTTACCATGCAA
1 AGGTCATTGAATTCGGCTACTTAATGGCAAAGGAAACATGCATTTAAGGAGATGTTACCATGCAA
37546283 GGAACGGCATTTAAAGA
66 GGAACGGCATTTAAAGA
*
37546300 AGGTCATTGAAATTCGGCTACTTAATGGCAAAGGAAACATGCA-TTAAGGAGATGTTCCCATGCA
1 AGGTCATTG-AATTCGGCTACTTAATGGCAAAGGAAACATGCATTTAAGGAGATGTTACCATGCA
* *
37546364 TGGAACGGTATTTAAAG
65 AGGAACGGCATTTAAAG
37546381 GGAAGTAAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
82 42 0.58
83 31 0.42
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.26
Consensus pattern (82 bp):
AGGTCATTGAATTCGGCTACTTAATGGCAAAGGAAACATGCATTTAAGGAGATGTTACCATGCAA
GGAACGGCATTTAAAGA
Found at i:37546920 original size:21 final size:21
Alignment explanation
Indices: 37546894--37546956 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
37546884 TTGGTATTTG
37546894 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
37546915 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
37546936 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
37546957 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:37548051 original size:10 final size:10
Alignment explanation
Indices: 37548036--37548077 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
37548026 TTTGCAAGTT
37548036 TTGAGCTAAA
1 TTGAGCTAAA
* *
37548046 TTGAGCTGAC
1 TTGAGCTAAA
*
37548056 TTGAGCT-CA
1 TTGAGCTAAA
37548065 TTGAGCTAAA
1 TTGAGCTAAA
37548075 TTG
1 TTG
37548078 GAAGTTAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (10 bp):
TTGAGCTAAA
Found at i:37556810 original size:18 final size:18
Alignment explanation
Indices: 37556783--37556824 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
37556773 TGCTGGAATA
*
37556783 AATTAATTAAGTT-AGTTT
1 AATTAATTAA-TTCAGCTT
*
37556801 AATTAGTTAATTCAGCTT
1 AATTAATTAATTCAGCTT
37556819 AATTAA
1 AATTAA
37556825 ATGTTGAGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (18 bp):
AATTAATTAATTCAGCTT
Found at i:37563011 original size:19 final size:20
Alignment explanation
Indices: 37562976--37563013 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
37562966 CAAGCTGACT
*
37562976 TTAGCTCAATTTGAGCTCCC
1 TTAGCTCAATTTCAGCTCCC
37562996 TTAGCTC-ATTTCAGCTCC
1 TTAGCTCAATTTCAGCTCC
37563014 AATCAGCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.18, C:0.32, G:0.13, T:0.37
Consensus pattern (20 bp):
TTAGCTCAATTTCAGCTCCC
Found at i:37566985 original size:20 final size:20
Alignment explanation
Indices: 37566941--37566989 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
37566931 TGAAGAAAGT
37566941 GAAAAAGAAAAGCAAAATGA
1 GAAAAAGAAAAGCAAAATGA
*
37566961 AAAAAAGAAAA-CAAAA-GTA
1 GAAAAAGAAAAGCAAAATG-A
*
37566980 GGAAAAGAAA
1 GAAAAAGAAA
37566990 GTGAAAAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 1 0.04
19 14 0.56
20 10 0.40
ACGTcount: A:0.73, C:0.04, G:0.18, T:0.04
Consensus pattern (20 bp):
GAAAAAGAAAAGCAAAATGA
Found at i:37566995 original size:25 final size:24
Alignment explanation
Indices: 37566967--37567013 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
37566957 ATGAAAAAAA
37566967 GAAAACAAAA-GTAGGAAAAGAAAGT
1 GAAAACAAAATG-A-GAAAAGAAAGT
*
37566992 GAAAAGAAAATGAGAAAAGAAA
1 GAAAACAAAATGAGAAAAGAAA
37567014 AACAAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 10 0.50
26 1 0.05
ACGTcount: A:0.68, C:0.02, G:0.23, T:0.06
Consensus pattern (24 bp):
GAAAACAAAATGAGAAAAGAAAGT
Found at i:37567023 original size:22 final size:21
Alignment explanation
Indices: 37566995--37567035 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
37566985 AGAAAGTGAA
37566995 AAGAAAATGAGAAAAGAAAAAC
1 AAGAAAATGAGAAAA-AAAAAC
*
37567017 AAGAAAATGTGAAAAAAAA
1 AAGAAAATGAGAAAAAAAA
37567036 GCCTGATTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.73, C:0.02, G:0.17, T:0.07
Consensus pattern (21 bp):
AAGAAAATGAGAAAAAAAAAC
Found at i:37574495 original size:19 final size:18
Alignment explanation
Indices: 37574459--37574498 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37574449 TTTTCACTCG
*
37574459 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
37574477 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
37574496 TTT
1 TTT
37574499 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:37575560 original size:13 final size:13
Alignment explanation
Indices: 37575542--37575599 Score: 66
Period size: 13 Copynumber: 4.5 Consensus size: 13
37575532 ACTAGCTCTC
37575542 TTTTTTTTCAA--
1 TTTTTTTTCAATT
*
37575553 TTTTTTTTGAATT
1 TTTTTTTTCAATT
*
37575566 TTTTTTTTGAATT
1 TTTTTTTTCAATT
*
37575579 TTTTTTTTCAAAAT
1 TTTTTTTTC-AATT
37575593 TTTTTTT
1 TTTTTTT
37575600 GAAGAAACTA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
11 10 0.24
13 21 0.51
14 10 0.24
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.76
Consensus pattern (13 bp):
TTTTTTTTCAATT
Found at i:37575580 original size:11 final size:11
Alignment explanation
Indices: 37575542--37575584 Score: 59
Period size: 11 Copynumber: 3.7 Consensus size: 11
37575532 ACTAGCTCTC
*
37575542 TTTTTTTTCAA
1 TTTTTTTTGAA
37575553 TTTTTTTTGAA
1 TTTTTTTTGAA
37575564 TTTTTTTTTTGAA
1 --TTTTTTTTGAA
37575577 TTTTTTTT
1 TTTTTTTT
37575585 TTCAAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 18 0.62
13 11 0.38
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:37589278 original size:13 final size:15
Alignment explanation
Indices: 37589262--37589297 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
37589252 AAAAAAATTC
37589262 AAAAAAAAGT-GA-G
1 AAAAAAAAGTCGAGG
37589275 AAAAAAAA-TCGAGG
1 AAAAAAAAGTCGAGG
37589289 AAAAAAAAG
1 AAAAAAAAG
37589298 AGTTGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.05
13 10 0.50
14 9 0.45
ACGTcount: A:0.72, C:0.03, G:0.19, T:0.06
Consensus pattern (15 bp):
AAAAAAAAGTCGAGG
Found at i:37590276 original size:18 final size:18
Alignment explanation
Indices: 37590255--37590289 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
37590245 AGAAAAGAAA
37590255 ATTGAAAAAGAAATTGAG
1 ATTGAAAAAGAAATTGAG
*
37590273 ATTGAGAAAGAAATTGA
1 ATTGAAAAAGAAATTGA
37590290 AAAAGAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (18 bp):
ATTGAAAAAGAAATTGAG
Found at i:37590297 original size:18 final size:18
Alignment explanation
Indices: 37590261--37590299 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
37590251 GAAAATTGAA
* **
37590261 AAAGAAATTGAGATTGAG
1 AAAGAAATTGAAAAAGAG
37590279 AAAGAAATTGAAAAAGAG
1 AAAGAAATTGAAAAAGAG
37590297 AAA
1 AAA
37590300 ATAAAAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (18 bp):
AAAGAAATTGAAAAAGAG
Found at i:37596421 original size:35 final size:35
Alignment explanation
Indices: 37596382--37596452 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
37596372 TTAAACTCTC
37596382 TTGTCGCCTCTCCAGCCCTATTCAACCTTCAAGAA
1 TTGTCGCCTCTCCAGCCCTATTCAACCTTCAAGAA
*
37596417 TTGTCGCCTCTCCAGCCCTGTTCAACCTTCAAGAA
1 TTGTCGCCTCTCCAGCCCTATTCAACCTTCAAGAA
37596452 T
1 T
37596453 CTGTTCAGCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.21, C:0.37, G:0.13, T:0.30
Consensus pattern (35 bp):
TTGTCGCCTCTCCAGCCCTATTCAACCTTCAAGAA
Found at i:37597126 original size:326 final size:326
Alignment explanation
Indices: 37596519--37597155 Score: 789
Period size: 326 Copynumber: 2.0 Consensus size: 326
37596509 TATTGCCGTC
* * * * *
37596519 CAAACCCTAGATCTAGTTGATTTCGTGATTTGCTGATTTTTTTTGAAATTAACTTGCTGTTTTGT
1 CAAACCCTAAATCTAGTTAATTTCGTGATCTGCTGAGTTTTTTTGAAATTAACTTACTGTTTTGT
* * * * **
37596584 GTTCCTCTTTTCAGATTCGGCTGTTCGGAACCTATCTTGAATTCAATTCCATGTTCTTGGCTTCC
66 GTTACTCTTTTCAGATTCGACAGTTCGGAACCTACCTTGAACGCAATTCCATGTTCTTGGCTTCC
* * ** * * **
37596649 AAGATTAGCTATTCATAATTGTTTTTAATTCTTGGCTGATCTTTTATTGATTTGGGTGTTTTCGT
131 AAGATTAGCTATCCATAAGTGCGTTTAATCCTTGGCTGATCCTTTATTGATTTGGGAATTTTCGT
* * * * * *
37596714 TTCAGATCTAATTGATTGTAAGCCGAATTTTCTGTTTCGTTTCAGATCCAAGCGTTTAGAGTTTT
196 TTCAGATCTAATCGAATCTAAACCGAATTCTCTGTTTCGTTTCAGATCCAAGCGTTCAGAGTTTT
* * * *
37596779 AGTAGGAGTTTGCCCTGACTTGACAACTCGATCTTGGTCCACGCGCAACCCCCTAGATCAACCTT
261 AGTAAGAGTTTGCCATGACTTGACAACTCAATCTTGATCCACGCGCAACCCCCTAGATCAACCTT
37596844 T
326 T
37596845 CAAACCCTAAATCTAGTTAATTTCGTGATCTGCTGAGTTTTTTTGAAATTAACTTACTGTTTTGT
1 CAAACCCTAAATCTAGTTAATTTCGTGATCTGCTGAGTTTTTTTGAAATTAACTTACTGTTTTGT
* * *
37596910 GTTATTCTTTTCAGATTCGACAGATT-GGAGCCTACCTTGAACGCAA-TCTCGTGTTCTTGGCTT
66 GTTACTCTTTTCAGATTCGACAG-TTCGGAACCTACCTTGAACGCAATTC-CATGTTCTTGGCTT
* * * *
37596973 CCAAGATTA-CTCATCCCTAAGTGCGTTTGATCCTT-GCTGTTCCTTTCTTGATTTGGGAATTTT
129 CCAAGATTAGCT-ATCCATAAGTGCGTTTAATCCTTGGCTGATCCTTTATTGATTTGGGAATTTT
* * * **
37597036 CATTTTTAGATCTAATCGAATCTAATATC-AATTCTCTGTTTCGTTTCAGATCCATTCGTTCAGA
193 C-GTTTCAGATCTAATCGAATCTAA-ACCGAATTCTCTGTTTCGTTTCAGATCCAAGCGTTCAGA
* * * *
37597100 GTTTTCGTAAGAGTTTTCCATGACTTGACAACTCAATCTTGATCCGCTCGCAACCC
256 GTTTTAGTAAGAGTTTGCCATGACTTGACAACTCAATCTTGATCCACGCGCAACCC
37597156 TCTATCATTT
Statistics
Matches: 261, Mismatches: 45, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
325 28 0.11
326 230 0.88
327 3 0.01
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (326 bp):
CAAACCCTAAATCTAGTTAATTTCGTGATCTGCTGAGTTTTTTTGAAATTAACTTACTGTTTTGT
GTTACTCTTTTCAGATTCGACAGTTCGGAACCTACCTTGAACGCAATTCCATGTTCTTGGCTTCC
AAGATTAGCTATCCATAAGTGCGTTTAATCCTTGGCTGATCCTTTATTGATTTGGGAATTTTCGT
TTCAGATCTAATCGAATCTAAACCGAATTCTCTGTTTCGTTTCAGATCCAAGCGTTCAGAGTTTT
AGTAAGAGTTTGCCATGACTTGACAACTCAATCTTGATCCACGCGCAACCCCCTAGATCAACCTT
T
Found at i:37600023 original size:19 final size:18
Alignment explanation
Indices: 37599987--37600026 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37599977 TTTCCACTCG
*
37599987 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
37600005 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
37600024 TTT
1 TTT
37600027 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:37601895 original size:58 final size:58
Alignment explanation
Indices: 37601805--37602185 Score: 744
Period size: 58 Copynumber: 6.6 Consensus size: 58
37601795 TGGTTTTGAA
* *
37601805 ATGCAAATTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAGTG
1 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
37601863 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
1 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
37601921 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
1 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
37601979 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
1 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
37602037 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
1 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
37602095 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
1 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
37602153 ATGCAAACTTAACTAACATGAAAGTTACATAAT
1 ATGCAAACTTAACTAACATGAAAGTTACATAAT
37602186 GCACGACTTT
Statistics
Matches: 321, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
58 321 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.33
Consensus pattern (58 bp):
ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
Found at i:37616029 original size:46 final size:46
Alignment explanation
Indices: 37615962--37616053 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
37615952 AAAGGCTTGA
* * *
37615962 TTAATTTTTCTTGAAAGCTCCAAAAATGGCTGGAAGTGGAAGAGTT
1 TTAATTTCTCTTAAAAGCTCCAAAAACGGCTGGAAGTGGAAGAGTT
37616008 TTAATTTCTCTTAAAAGCTCCAAAAACGGCTGGAAGTGGAAGAGTT
1 TTAATTTCTCTTAAAAGCTCCAAAAACGGCTGGAAGTGGAAGAGTT
37616054 GTTGCTGAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (46 bp):
TTAATTTCTCTTAAAAGCTCCAAAAACGGCTGGAAGTGGAAGAGTT
Found at i:37616227 original size:49 final size:49
Alignment explanation
Indices: 37616170--37616266 Score: 185
Period size: 49 Copynumber: 2.0 Consensus size: 49
37616160 ACAGCCACTT
*
37616170 ATTAAATGTGTAACAGGCTTGAATTGTAACCACTATAAGCTAAAAAGTA
1 ATTAAATGTGTAACAGCCTTGAATTGTAACCACTATAAGCTAAAAAGTA
37616219 ATTAAATGTGTAACAGCCTTGAATTGTAACCACTATAAGCTAAAAAGT
1 ATTAAATGTGTAACAGCCTTGAATTGTAACCACTATAAGCTAAAAAGT
37616267 CACCTGCAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.29
Consensus pattern (49 bp):
ATTAAATGTGTAACAGCCTTGAATTGTAACCACTATAAGCTAAAAAGTA
Found at i:37616321 original size:21 final size:23
Alignment explanation
Indices: 37616276--37616322 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
37616266 TCACCTGCAA
* *
37616276 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
37616299 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
37616320 TAA
1 TAA
37616323 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:37626315 original size:84 final size:84
Alignment explanation
Indices: 37626209--37626374 Score: 260
Period size: 84 Copynumber: 2.0 Consensus size: 84
37626199 TTTGTCGGGC
* *
37626209 CTTTGATCTCGTTATTGGGCCTTGTGGCAACTTGAGCCCATCACTTTCTTGAATTTGGGTTGGGC
1 CTTTGATCTCGTTATTGGGCCTTGTGGCAACTTGAGCCCATCACGTTCTTGAACTTGGGTTGGGC
37626274 CTTTATGACTCATATCAGG
66 CTTTATGACTCATATCAGG
* * **
37626293 CTTTGATCTCGTTATTGGGCCTTGTGGTAATTTGAGCCCATCACGTTCTTGGGCTTGGGTTGGGC
1 CTTTGATCTCGTTATTGGGCCTTGTGGCAACTTGAGCCCATCACGTTCTTGAACTTGGGTTGGGC
* *
37626358 CTTTGTGACTCGTATCA
66 CTTTATGACTCATATCA
37626375 CAAAAAGAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
84 74 1.00
ACGTcount: A:0.14, C:0.21, G:0.26, T:0.39
Consensus pattern (84 bp):
CTTTGATCTCGTTATTGGGCCTTGTGGCAACTTGAGCCCATCACGTTCTTGAACTTGGGTTGGGC
CTTTATGACTCATATCAGG
Found at i:37632233 original size:44 final size:44
Alignment explanation
Indices: 37632183--37632324 Score: 119
Period size: 43 Copynumber: 3.2 Consensus size: 44
37632173 ATTTTCTTGA
37632183 TTCTTGAAATCGCTCCAAACAGCAAAATTGGGCCAAGATTCGGT
1 TTCTTGAAATCGCTCCAAACAGCAAAATTGGGCCAAGATTCGGT
** ** *** ** * *
37632227 TTCTTG-AATTTCTTGAAA-A-CAAGAAATTGAATCTTGATTTTCTTGA
1 TTCTTGAAATCGCTCCAAACAGC-A-AAATTGGGCCAAGA--TTC-GGT
37632273 TTCTTGAAATCGCTCCAAACAGCAAAATTGGGCCAAGATTCGGT
1 TTCTTGAAATCGCTCCAAACAGCAAAATTGGGCCAAGATTCGGT
37632317 TTCTTGAA
1 TTCTTGAA
37632325 TTTCTTGAAA
Statistics
Matches: 68, Mismatches: 22, Indels: 16
0.64 0.21 0.15
Matches are distributed among these distances:
41 1 0.01
42 2 0.03
43 17 0.25
44 15 0.22
45 6 0.09
46 7 0.10
47 17 0.25
48 2 0.03
49 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (44 bp):
TTCTTGAAATCGCTCCAAACAGCAAAATTGGGCCAAGATTCGGT
Found at i:37632268 original size:90 final size:90
Alignment explanation
Indices: 37632166--37632364 Score: 398
Period size: 90 Copynumber: 2.2 Consensus size: 90
37632156 CAAGATTTGA
37632166 AATCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAATTGGGCCAAGATTCGGTTTCT
1 AATCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAATTGGGCCAAGATTCGGTTTCT
37632231 TGAATTTCTTGAAAACAAGAAATTG
66 TGAATTTCTTGAAAACAAGAAATTG
37632256 AATCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAATTGGGCCAAGATTCGGTTTCT
1 AATCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAATTGGGCCAAGATTCGGTTTCT
37632321 TGAATTTCTTGAAAACAAGAAATTG
66 TGAATTTCTTGAAAACAAGAAATTG
37632346 AATCTTGATTTTCTTGATT
1 AATCTTGATTTTCTTGATT
37632365 TGAGCCCATC
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 109 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (90 bp):
AATCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAATTGGGCCAAGATTCGGTTTCT
TGAATTTCTTGAAAACAAGAAATTG
Found at i:37634116 original size:19 final size:19
Alignment explanation
Indices: 37634094--37634131 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
37634084 AACTAGCCAA
37634094 GGACAACTCAAGAGTCATT
1 GGACAACTCAAGAGTCATT
37634113 GGACAACTCAAGAGTCATT
1 GGACAACTCAAGAGTCATT
37634132 TTCTAAGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (19 bp):
GGACAACTCAAGAGTCATT
Found at i:37636684 original size:79 final size:82
Alignment explanation
Indices: 37636567--37636751 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
37636557 GCTACTCGTT
* *
37636567 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCAGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
37636630 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
37636647 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
37636710 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
37636727 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37636752 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:37636751 original size:40 final size:40
Alignment explanation
Indices: 37636548--37636751 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
37636538 CGGAATTTAA
** *
37636548 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37636588 CCGGTTATAGTAACTCGCACAAATGCCTTCAGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37636628 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37636667 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37636707 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37636747 CCGGA
1 CCGGA
37636752 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37641008 original size:65 final size:65
Alignment explanation
Indices: 37640928--37641058 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
37640918 ATCCATCTCC
* *
37640928 TACCGAAATTGGGTCGTTGATGCTCGTAACGGAGATCCAATGCGCTTTGGCTGCAAGATTCGGTT
1 TACCAAAATTGGGTCGTTGATGCTCGTAACGGAGATCCAATGCACTTTGGCTGCAAGATTCGGTT
*
37640993 TACCAAAATTGGGTCGTTGATGCTCGTAACGGAGATCTAATGCACTTTGGCTGCAAGATTCGGTT
1 TACCAAAATTGGGTCGTTGATGCTCGTAACGGAGATCCAATGCACTTTGGCTGCAAGATTCGGTT
37641058 T
1 T
37641059 CTTGGACCAA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (65 bp):
TACCAAAATTGGGTCGTTGATGCTCGTAACGGAGATCCAATGCACTTTGGCTGCAAGATTCGGTT
Found at i:37644663 original size:18 final size:18
Alignment explanation
Indices: 37644626--37644663 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
37644616 AATCTCTTGA
*
37644626 ATTTTATTTCTTTATGTT
1 ATTTTATTTCTTTATATT
37644644 ATTTTATTT-TTTATTATT
1 ATTTTATTTCTTTA-TATT
37644662 AT
1 AT
37644664 AAAAACTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (18 bp):
ATTTTATTTCTTTATATT
Found at i:37645718 original size:94 final size:94
Alignment explanation
Indices: 37645557--37645744 Score: 279
Period size: 94 Copynumber: 2.0 Consensus size: 94
37645547 TAGTTCAGAT
*
37645557 ACAAAATTTCTATTATGGGTTAGACAATCAAAATAGACGAAAATTTGACATTATGACTAGGGAAG
1 ACAAAATTTCTATTATGGGTTAGACAATCAAAATAGACGAAAATTCGACATTATGACTAGGGAAG
**
37645622 TATTTGGACTAAAACCCAGGAGAAAGTTA
66 TATTTGGAAGAAAACCCAGGAGAAAGTTA
* * * * *
37645651 ACAAATTTTCTTTTATGGGTTGGACAATCAAAATAGATG-GAATTCGACATTATGACTAAGGGAA
1 ACAAAATTTCTATTATGGGTTAGACAATCAAAATAGACGAAAATTCGACATTATGACT-AGGGAA
*
37645715 GTATTTGGAAGAAAACCCAGGAGGAAGTTA
65 GTATTTGGAAGAAAACCCAGGAGAAAGTTA
37645745 TGGAAATATT
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
93 16 0.19
94 68 0.81
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.27
Consensus pattern (94 bp):
ACAAAATTTCTATTATGGGTTAGACAATCAAAATAGACGAAAATTCGACATTATGACTAGGGAAG
TATTTGGAAGAAAACCCAGGAGAAAGTTA
Found at i:37648954 original size:21 final size:21
Alignment explanation
Indices: 37648914--37648954 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37648904 ACCTGCTCTC
* **
37648914 GATGTCGCGACATCGCTGAGG
1 GATGACGCGACATCAATGAGG
37648935 GATGACGCGACATCAATGAG
1 GATGACGCGACATCAATGAG
37648955 TAACTCTGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.22, G:0.34, T:0.17
Consensus pattern (21 bp):
GATGACGCGACATCAATGAGG
Found at i:37649198 original size:40 final size:39
Alignment explanation
Indices: 37649140--37649219 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 39
37649130 AATAAAAAGA
* *
37649140 AATCAAATTACATCCATAATAGTTTGTGTAGGGAATTTC
1 AATCAAATTACAGCCATAATAGTTTATGTAGGGAATTTC
*
37649179 ANATCAAATTACAGGCATAATAGTTTATGTAGGGAATTTC
1 A-ATCAAATTACAGCCATAATAGTTTATGTAGGGAATTTC
37649219 A
1 A
37649220 GCAAGAATAG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
39 1 0.03
40 36 0.97
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (39 bp):
AATCAAATTACAGCCATAATAGTTTATGTAGGGAATTTC
Found at i:37650550 original size:50 final size:50
Alignment explanation
Indices: 37650440--37650688 Score: 182
Period size: 50 Copynumber: 4.9 Consensus size: 50
37650430 ACATTTGGGT
* * * *
37650440 GATGAGA--TCCCATGTAAGACCATGTTTGGAACATGGCATTGGCATCATTGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGA
* *
37650491 GATTATGAGAGGTCCCATGTAAGAACGTGTCTGGGACATGGCGTTGGCACCGA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
** * * * *
37650544 GATGAGAGGTCCCCCGTAAGACCATGTCTAGGACAAGGCATGGGCACCGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
* ** * **
37650594 TATGAGAACTCCCATGTAAGACCATATCTGGGATGTGGCGTTGGCA--GTA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-A
* * * ** * *
37650643 CAAGAAACATCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
37650689 TGTTATTATC
Statistics
Matches: 156, Mismatches: 36, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
48 1 0.01
49 37 0.24
50 75 0.48
51 1 0.01
53 3 0.02
54 6 0.04
55 1 0.01
56 32 0.21
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
Found at i:37654879 original size:51 final size:50
Alignment explanation
Indices: 37654748--37655010 Score: 351
Period size: 51 Copynumber: 5.4 Consensus size: 50
37654738 TACACGGAAT
* * * *
37654748 CACTTATCATTTATCTCTTGTCACTGATCAGATAAGTGTTGCTAAGCTAC
1 CACTTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
* * *
37654798 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAGGTTAC
1 CACTTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
*
37654848 CACTTAATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCGAAGCTAC
1 CACTT-ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
* * *
37654899 CAC-T-T-A----TCACTTGTCACTGATCAGATAATTGTAGCTAGGTTAC
1 CACTTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
*
37654942 CACTTAATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCGAAGCTAC
1 CACTT-ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
37654993 CACTTATCACTTGTCACT
1 CACTTATCACTTGTCACT
37655011 GATCAGAAGT
Statistics
Matches: 187, Mismatches: 17, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
43 36 0.19
44 1 0.01
46 1 0.01
47 2 0.01
48 1 0.01
50 64 0.34
51 82 0.44
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (50 bp):
CACTTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
Found at i:37654925 original size:94 final size:94
Alignment explanation
Indices: 37654764--37655017 Score: 418
Period size: 94 Copynumber: 2.6 Consensus size: 94
37654754 TCATTTATCT
* *
37654764 CTTGTCACTGATCAGATAAGTGTTGCTAAGCTACCACTTATCACTTATCACTTGTCACTGATCAG
1 CTTGTCACTGATCAGATAAGTGTAGCGAAGCT---AC----CACTTATCACTTGTCACTGATCAG
37654829 ATAAGTGTAGCTAGGTTACCACTTAATCACTTGTCA
59 ATAAGTGTAGCTAGGTTACCACTTAATCACTTGTCA
*
37654865 CTTGTCACTGATCAGATAAGTGTAGCGAAGCTACCACTTATCACTTGTCACTGATCAGATAATTG
1 CTTGTCACTGATCAGATAAGTGTAGCGAAGCTACCACTTATCACTTGTCACTGATCAGATAAGTG
37654930 TAGCTAGGTTACCACTTAATCACTTGTCA
66 TAGCTAGGTTACCACTTAATCACTTGTCA
37654959 CTTGTCACTGATCAGATAAGTGTAGCGAAGCTACCACTTATCACTTGTCACTGATCAGA
1 CTTGTCACTGATCAGATAAGTGTAGCGAAGCTACCACTTATCACTTGTCACTGATCAGA
37655018 AGTACTCAAC
Statistics
Matches: 150, Mismatches: 3, Indels: 7
0.94 0.02 0.04
Matches are distributed among these distances:
94 118 0.79
98 2 0.01
101 30 0.20
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (94 bp):
CTTGTCACTGATCAGATAAGTGTAGCGAAGCTACCACTTATCACTTGTCACTGATCAGATAAGTG
TAGCTAGGTTACCACTTAATCACTTGTCA
Found at i:37667478 original size:50 final size:50
Alignment explanation
Indices: 37667424--37667664 Score: 437
Period size: 50 Copynumber: 4.8 Consensus size: 50
37667414 CTTATCGCTA
*
37667424 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTATCACTTGTCACTG
1 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGTCACTTGTCACTG
*
37667474 ATCAGATAAGTGTAGCTAGGCTACCACTTAATCACTTGTCACTTGTCACTG
1 ATCAGATAAGTGTAGCTAAGCTACCACTT-ATCACTTGTCACTTGTCACTG
37667525 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGTCACTTGTCACTG
1 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGTCACTTGTCACTG
*
37667575 ATCAGATAAGTGTAGCGAAGCTACCACTTATCACTTGTCACTTGTCACTG
1 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGTCACTTGTCACTG
*
37667625 ATCAGATAAGTGTAGCGAAGCTACCACTTATCACTTGTCA
1 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGTCA
37667665 TAGATCAGAA
Statistics
Matches: 186, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
50 138 0.74
51 48 0.26
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (50 bp):
ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGTCACTTGTCACTG
Found at i:37667548 original size:101 final size:100
Alignment explanation
Indices: 37667424--37667660 Score: 429
Period size: 101 Copynumber: 2.4 Consensus size: 100
37667414 CTTATCGCTA
37667424 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAG
1 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAG
* *
37667489 CTAGGCTACCACTTAATCACTTGTCACTTGTCACTG
66 CGAAGCTACCACTT-ATCACTTGTCACTTGTCACTG
*
37667525 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAG
1 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAG
37667590 CGAAGCTACCACTTATCACTTGTCACTTGTCACTG
66 CGAAGCTACCACTTATCACTTGTCACTTGTCACTG
*
37667625 ATCAGATAAGTGTAGCGAAGCTACCACTTATCACTT
1 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTT
37667661 GTCATAGATC
Statistics
Matches: 132, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
100 56 0.42
101 76 0.58
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (100 bp):
ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAG
CGAAGCTACCACTTATCACTTGTCACTTGTCACTG
Found at i:37675802 original size:131 final size:131
Alignment explanation
Indices: 37675660--37675952 Score: 462
Period size: 131 Copynumber: 2.2 Consensus size: 131
37675650 ATAATTTTTT
*
37675660 CAACCTACTCCACTGCTG-CTCAGGGAAATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTA
1 CAACCTACTCCACTGCTGAC-CAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTA
* * * *
37675724 GGGAAGATAAGATTCACCATCTTCGATCTGCTCTACTATTGCTTAAGAAGATGAGATCTGTAATT
65 GGGAAGACAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGAAGATGAGATCAGTAATT
37675789 TC
130 TC
* *
37675791 CAACCTACTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCTTGG
1 CAACCTACTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTAG
* * * *
37675856 GGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATGAGATCAGTAATTT
66 GGAAGACAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGAAGATGAGATCAGTAATTT
37675921 C
131 C
*
37675922 CAACCTATTCCACTGCTGACCAGGGAGATAG
1 CAACCTACTCCACTGCTGACCAGGGAGATAG
37675953 AATTACTGGC
Statistics
Matches: 149, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
131 148 0.99
132 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (131 bp):
CAACCTACTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTAG
GGAAGACAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGAAGATGAGATCAGTAATTT
C
Found at i:37675963 original size:131 final size:132
Alignment explanation
Indices: 37675658--37676534 Score: 807
Period size: 132 Copynumber: 6.7 Consensus size: 132
37675648 CTATAATTTT
* * * * * *
37675658 TTCAACCTACTCCACTGCTG-CTCAGGGAAATAGGACTT-GTGGCTTAAATCTGCTTCCC-T-AC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATA-GAATTACTGGCTTAAATGTACTTCCCGTAAC
* * * * * * * * *
37675719 TC-CTAGGGAAGATAAGATTCACCATCTTCGATCTGCTCTACTATTGCTTAAGAAGATGAGATCT
64 TCAC-AGGG-AGGTAAAATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCA
37675783 GTAAT-
127 GTAATC
* * * * *
37675788 TTCCAACCTACTCCACTGCTGACCAGGGAGATAGGACTT-GTGGCTTAAATCTGCTTCCC-T-AC
1 TT-CAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACTGGCTTAAATGTACTTCCCGTAAC
*** * * *
37675850 TCTTGGGGAAG-ACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATGAGATCA
64 TCACAGGGAGGTA-AA-ATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCA
37675914 GTAAT-
127 GTAATC
* *
37675919 TTCCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACCGTAAC
1 TT-CAACCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTAAATGTACTTC-CCGTAAC
* * *
37675984 T-TCAGGGAGGTAAAA-TCTGCCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTA
64 TCACAGGGAGGTAAAATTC-GCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC-A
37676047 -TAATC
127 GTAATC
* * * * *
37676052 TTCAATCTATTCCGCTGCTG-CCTAGGAAGATAGAA-TATTGGCTTTAATGTAC-TCCACTGTAA
1 TTCAACCTATTCCACTGCTGACC-AGGGAGATAGAATTACTGGCTTAAATGTACTTCC-C-GTAA
*
37676114 C-CACAGGGAGGTAAAA-TCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
63 CTCACAGGGAGGTAAAATTC-GCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC-
37676177 A-TAATC
126 AGTAATC
* ** *
37676183 TTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACTGGCTTTAATGTAC-TCCACTGTAAC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTAAATGTACTTCC-C-GTAAC
* *
37676247 -CACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
64 TCACAGGGAGGTAAAATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCAGT
37676311 AATC
129 AATC
* * ** * * *
37676315 TTCAATCTATTCCACTACCAACTAGGGAGATAGAATTACTAGCTTCAATGTAC-TCCACTGTAAC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTAAATGTACTTCC-C-GTAAC
* * * * *
37676379 -CACAGGTAGGTAAAATCCGTCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
64 TCACAGGGAGGTAAAATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCAGT
37676443 AATC
129 AATC
* * ** * * *
37676447 TTTAATCTATTCCACTGCCAACCAGAGAGATAGAATTACTAGCTTCAATGTAC-TCCACTGTAAC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTAAATGTACTTCC-C-GTAAC
37676511 -CACAGGGAGGTAAAATTCGCCATC
64 TCACAGGGAGGTAAAATTCGCCATC
37676535 AACCTGTTCC
Statistics
Matches: 669, Mismatches: 57, Indels: 40
0.87 0.07 0.05
Matches are distributed among these distances:
129 2 0.00
130 10 0.01
131 269 0.40
132 371 0.55
133 13 0.02
134 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTAAATGTACTTCCCGTAACTC
ACAGGGAGGTAAAATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCAGTAA
TC
Found at i:37676035 original size:44 final size:44
Alignment explanation
Indices: 37675987--37676462 Score: 134
Period size: 44 Copynumber: 10.8 Consensus size: 44
37675977 CCGTAACTTC
* *
37675987 AGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCTT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTACTGCTT
* *** * * * * *
37676031 AGGGAGATAAGATCTATAATCTTCAATCTATTCCGCTGCTGCCT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTACTGCTT
* * * **
37676075 AGGAAGATAGAATAT-TG---GCTTTAATGTACTCCACTGTAAC--CAC
1 AGGGAGATA-AA-ATCTGCCATCTTTAATCTACTCCAC--T-ACTGCTT
* * *
37676118 AGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTACTGCTT
* *** * * * ** *
37676162 AGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCCAAC-C
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACT-ACTGCTT
* * *** * **
37676206 AGGGAGATAGAAT-TACTGGCTTTAATGTACTCCACTGTAAC--CAC
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCAC--T-ACTGCTT
* * ** *
37676250 AGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTACTGCTT
* ** * * **
37676294 AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACCAAC-T
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTA-CTGCTT
* * * * * * **
37676338 AGGGAGATAGAAT-TACTAGCTTCAATGTACTCCACTGTAAC--CAC
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCAC--T-ACTGCTT
* * * * * *
37676382 AGGTAGGTAAAATCCGTCATCTTTGATCTGCTCCACTACTGCTT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTACTGCTT
* ** *
37676426 AGGGAGATAAGATCTGTAATCTTTAATCTATTCCACT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACT
37676463 GCCAACCAGA
Statistics
Matches: 298, Mismatches: 108, Indels: 52
0.65 0.24 0.11
Matches are distributed among these distances:
41 2 0.01
42 22 0.07
43 44 0.15
44 177 0.59
45 50 0.17
46 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (44 bp):
AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTACTGCTT
Found at i:37676062 original size:132 final size:132
Alignment explanation
Indices: 37675874--37676534 Score: 990
Period size: 132 Copynumber: 5.0 Consensus size: 132
37675864 AGATTCGCCG
* * *
37675874 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATGAGATC-AGTAAT-TTCCAACCTATTCCACTG
1 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-TAATCTT-CAATCTATTCCACTG
** * **
37675937 CTGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACCGTAACTTCAGGGAGGTAAAATCT
64 CCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT
37676002 GCCA
129 GCCA
* *
37676006 TCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCGCTG-C
1 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCC
** * * *
37676070 TGCCTAGGAAGATAGAA-TATTGGCTTTAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTG
66 AACC-AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTG
37676134 CCA
130 CCA
37676137 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCC
1 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCC
* *
37676202 AACCAGGGAGATAGAATTACTGGCTTTAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGC
66 AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGC
37676267 CA
131 CA
* * *
37676269 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACC
1 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCC
* * * * *
37676334 AACTAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGTAGGTAAAATCCGT
66 AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGC
37676399 CA
131 CA
* *
37676401 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCC
1 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCC
* *
37676466 AACCAGAGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-TCG
66 AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-G
37676530 CCA
130 CCA
37676533 TC
1 TC
37676535 AACCTGTTCC
Statistics
Matches: 486, Mismatches: 37, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
131 119 0.24
132 364 0.75
133 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (132 bp):
TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCC
AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGC
CA
Found at i:37676238 original size:263 final size:264
Alignment explanation
Indices: 37675869--37676534 Score: 1007
Period size: 263 Copynumber: 2.5 Consensus size: 264
37675859 AGACAAGATT
* * * *
37675869 CGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATGAGATC-AGTAAT-TTCCAACCTATTC
1 CGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-TAATCTT-CAATCTATTC
** * **
37675932 CACTGCTGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACCGTAACTTCAGGGAGGTAA
64 CACTGCCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAA
*
37675997 AATCTGCCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTAT
129 AATCTGCCATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTAT
* * *** * * *
37676062 TCCGCTGCTGCCTAGGAAGATAGAA-TATTGGCTTTAATGTACTCCACTGTAACCACAGGGAGGT
194 TCCACTACCAACTAGGAAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGT
37676126 AAAATC
259 AAAATC
*
37676132 TGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCA
1 CGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCA
*
37676197 CTGCCAACCAGGGAGATAGAATTACTGGCTTTAATGTACTCCACTGTAACCACAGGGAGGTAAAA
66 CTGCCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAA
* * *
37676262 TCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTC
131 TCTGCCATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTC
* *
37676327 CACTACCAACTAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGTAGGTAA
196 CACTACCAACTAGGAAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAA
37676392 AATC
261 AATC
* * *
37676396 CGTCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCA
1 CGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCA
* *
37676461 CTGCCAACCAGAGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAA
66 CTGCCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAA
37676526 T-TCGCCATC
131 TCT-GCCATC
37676535 AACCTGTTCC
Statistics
Matches: 366, Mismatches: 33, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
263 192 0.52
264 174 0.48
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (264 bp):
CGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCA
CTGCCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAA
TCTGCCATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTC
CACTACCAACTAGGAAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAA
AATC
Found at i:37676707 original size:87 final size:88
Alignment explanation
Indices: 37676535--37676708 Score: 244
Period size: 87 Copynumber: 2.0 Consensus size: 88
37676525 ATTCGCCATC
* *
37676535 AACCTGTTCCACTACAACCGAGGGAGGCAAGGTTGGTATCTTCGATCTGCTTTGCTACCAATGTA
1 AACCTGTTCCACTACAACCGAGGGAGGCAAGGTTGGTATCTTCGATCTGCTTCGCTACCAATGCA
37676600 GGAAGGCAAAATCTGCTATCTTT
66 GGAAGGCAAAATCTGCTATCTTT
* * ** *
37676623 AACCTGTTCCACTGCAACCGAGGGAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTCGATGC
1 AACCTGTTCCACTACAACCGAGGGAGGCAAGG-TTGGTATCTTCGATCTGCTTCGCTACCAATGC
* *
37676686 AGGAAGGCAAGATCTGTTATCTT
65 AGGAAGGCAAAATCTGCTATCTT
37676709 CACTGATCTA
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
87 40 0.53
88 32 0.42
89 4 0.05
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.29
Consensus pattern (88 bp):
AACCTGTTCCACTACAACCGAGGGAGGCAAGGTTGGTATCTTCGATCTGCTTCGCTACCAATGCA
GGAAGGCAAAATCTGCTATCTTT
Found at i:37678859 original size:16 final size:16
Alignment explanation
Indices: 37678838--37678870 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
37678828 CGCATTGGTC
*
37678838 TCTCCTTTTTTCTTTT
1 TCTCCTTTTTTATTTT
37678854 TCTCCTTTTTTATTTT
1 TCTCCTTTTTTATTTT
37678870 T
1 T
37678871 ATTTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (16 bp):
TCTCCTTTTTTATTTT
Found at i:37678869 original size:6 final size:6
Alignment explanation
Indices: 37678860--37678966 Score: 67
Period size: 6 Copynumber: 17.8 Consensus size: 6
37678850 TTTTTCTCCT
* * * * * *
37678860 TTTTTA TTTTTA TTTTTA TTTTGA TTTTTCC TTTTTGC TTTTGA CTTTGA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT-A TTTTT-A TTTTTA TTTTTA
* * * *
37678910 TTTTTC TTTTT- TTTTT- CTTCT- TTTTTA TTTTTTA TTTTTA TTTTGA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA TTTTTA
*
37678956 TTTTGA TTTTT
1 TTTTTA TTTTT
37678967 TTATTGAATC
Statistics
Matches: 82, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
5 11 0.13
6 55 0.67
7 16 0.20
ACGTcount: A:0.10, C:0.07, G:0.06, T:0.78
Consensus pattern (6 bp):
TTTTTA
Done.