Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 12 of 203
Found at i:4061886 original size:14 final size:15
Alignment explanation
Indices: 4061837--4061888 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
4061827 ATAAAATATA
4061837 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
4061852 TATTAAATATATTAT
1 AATTAAATATATTAT
4061867 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
4061880 AATTTAATA
1 AATTAAATA
4061889 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:4062024 original size:120 final size:120
Alignment explanation
Indices: 4061601--4062013 Score: 749
Period size: 120 Copynumber: 3.4 Consensus size: 120
4061591 ATCATATTTA
4061601 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
4061666 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
4061721 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
4061786 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
*
4061841 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
4061906 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAA-TT
* * *
4061961 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
4062014 TAAAATAATT
Statistics
Matches: 286, Mismatches: 5, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
119 3 0.01
120 281 0.98
121 2 0.01
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:4062083 original size:26 final size:28
Alignment explanation
Indices: 4062054--4062114 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
4062044 TATGAATTTG
*
4062054 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
4062080 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
4062108 TAAAATT
1 TATAATT
4062115 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:4062112 original size:47 final size:46
Alignment explanation
Indices: 4062061--4062204 Score: 104
Period size: 45 Copynumber: 3.1 Consensus size: 46
4062051 TTGTATAATT
4062061 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATAATTATTATTA-ATATAATTTAATAATAATATATAATTTCA
* ** * *
4062108 TAAAAT--TCT-TGA-TAATA-AATTTTCTTATATGAATTTATACAATT--
1 TAAAATAAT-TATTATTAATATAA-TTTAATA-AT-AATATATA-ATTTCA
* * *
4062152 TAAAATAATTAATATTAAATATAATTTAATAGTGATATATAATTTCA
1 TAAAATAATTATTATT-AATATAATTTAATAATAATATATAATTTCA
4062199 TAAAAT
1 TAAAAT
4062205 TCTTAATAAT
Statistics
Matches: 71, Mismatches: 13, Indels: 26
0.65 0.12 0.24
Matches are distributed among these distances:
42 2 0.03
43 8 0.11
44 10 0.14
45 14 0.20
46 12 0.17
47 14 0.20
48 9 0.13
49 2 0.03
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (46 bp):
TAAAATAATTATTATTAATATAATTTAATAATAATATATAATTTCA
Found at i:4062124 original size:91 final size:90
Alignment explanation
Indices: 4062029--4062236 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 90
4062019 TAATTATAAC
* * * *
4062029 TAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
4062094 AATATATAATTTCATAAAATTCTTGA
65 AATATATAATTTCATAAAATTCTTAA
*
4062120 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAA-TTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
4062185 GATATATAATTTCATAAAATTCTTAA
65 AATATATAATTTCATAAAATTCTTAA
4062211 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAAT-TTCTTATATGAATTTA
4062237 CTAAAATCAA
Statistics
Matches: 107, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
91 86 0.80
92 21 0.20
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (90 bp):
TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
ATATATAATTTCATAAAATTCTTAA
Found at i:4062196 original size:44 final size:43
Alignment explanation
Indices: 4062054--4062196 Score: 103
Period size: 44 Copynumber: 3.2 Consensus size: 43
4062044 TATGAATTTG
* * *
4062054 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAAT-ATGATA
** * * *
4062098 TATAATTTCATAAAATTCTTGATAATAAAT-T--TTCTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAATT-TAATATG-A--TA
*
4062145 TACAATTTAAAATAATTAATATTAAATATAATTTAATAGTGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATA-TGATA
4062189 TATAATTT
1 TATAATTT
4062197 CATAAAATTC
Statistics
Matches: 73, Mismatches: 15, Indels: 22
0.66 0.14 0.20
Matches are distributed among these distances:
44 34 0.47
45 7 0.10
46 8 0.11
47 24 0.33
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATATGATA
Found at i:4062211 original size:47 final size:46
Alignment explanation
Indices: 4062079--4062217 Score: 126
Period size: 47 Copynumber: 3.0 Consensus size: 46
4062069 TTATTATTAC
* *
4062079 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAAT-ATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
4062126 AT-T--TTCTTATATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
4062170 ATATAATTTAATAGTGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATA-TGATATATAATTTCATAAAATTCTTAATAATAA
4062217 A
1 A
4062218 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 14 0.20
47 22 0.32
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (46 bp):
ATATAATTTAATATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:4065271 original size:28 final size:28
Alignment explanation
Indices: 4065240--4065303 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
4065230 ATAAATTATA
4065240 AAATTTTTTCGTATATAGCAATTTGCAT
1 AAATTTTTTCGTATATAGCAATTTGCAT
*
4065268 AAATTTTTTCGTTTATAGCAATTTGCAT
1 AAATTTTTTCGTATATAGCAATTTGCAT
4065296 AAATTTTT
1 AAATTTTT
4065304 CGTCTTCGGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.50
Consensus pattern (28 bp):
AAATTTTTTCGTATATAGCAATTTGCAT
Found at i:4068014 original size:31 final size:30
Alignment explanation
Indices: 4067928--4068017 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
4067918 TTGGTTTAAT
*
4067928 GTGTAATTATATA-TATGAAATTTTAATTTG
1 GTGTAAATATATACT-TGAAATTTTAATTTG
* * *
4067958 GTGTAATTATACACGTGAAATTTTAATTGTG
1 GTGTAAATATATACTTGAAATTTTAATT-TG
*
4067989 GT-TCAAATATATACTTGAAACTTTAATTT
1 GTGT-AAATATATACTTGAAATTTTAATTT
4068018 TGATTTAATC
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
30 27 0.53
31 24 0.47
ACGTcount: A:0.36, C:0.06, G:0.13, T:0.46
Consensus pattern (30 bp):
GTGTAAATATATACTTGAAATTTTAATTTG
Found at i:4071227 original size:48 final size:48
Alignment explanation
Indices: 4071175--4071271 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
4071165 CATTTGCACA
*
4071175 TAATTTCAAGCTTCAAAATATACCTAAAACATTCATAATAAAGCTAGT
1 TAATTTCAAGCTTCAAAATATACCTAAAACATGCATAATAAAGCTAGT
4071223 TAATTTCAAGCTTCAAAATATACCTAAAACATGCATAATAAAGCTAGT
1 TAATTTCAAGCTTCAAAATATACCTAAAACATGCATAATAAAGCTAGT
4071271 T
1 T
4071272 CAACATGGTG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.45, C:0.16, G:0.07, T:0.31
Consensus pattern (48 bp):
TAATTTCAAGCTTCAAAATATACCTAAAACATGCATAATAAAGCTAGT
Found at i:4081908 original size:21 final size:21
Alignment explanation
Indices: 4081873--4081914 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
4081863 CATTTTGTTA
*
4081873 TTATTTATTTCACTTAGTTTAT
1 TTATTAATTTCACTTA-TTTAT
4081895 TTATTAATTT-ACTTATTTAT
1 TTATTAATTTCACTTATTTAT
4081915 CCTTTGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 5 0.26
22 9 0.47
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.64
Consensus pattern (21 bp):
TTATTAATTTCACTTATTTAT
Found at i:4087800 original size:29 final size:29
Alignment explanation
Indices: 4087758--4087816 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
4087748 TAAAATTCAA
4087758 ATATCTCAAAATATATAACCCTTGTGCTT
1 ATATCTCAAAATATATAACCCTTGTGCTT
*
4087787 ATATCTCAAAATATATAACCCTTTTGCTT
1 ATATCTCAAAATATATAACCCTTGTGCTT
4087816 A
1 A
4087817 CTCTATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.36, C:0.20, G:0.05, T:0.39
Consensus pattern (29 bp):
ATATCTCAAAATATATAACCCTTGTGCTT
Found at i:4088196 original size:45 final size:45
Alignment explanation
Indices: 4088141--4088302 Score: 184
Period size: 45 Copynumber: 3.6 Consensus size: 45
4088131 GGATCAGCAT
* * * *
4088141 ATAGC-ACCACCCTTATAATCAATTATATTCGATGGAATCAACAC
1 ATAGCAACCACCTTTATAATCAATGATATCCGGTGGAATCAACAC
** * * *
4088185 ATAGCAACCACCTTTATTTTTAATGACT-TCCGGTGGAGTCAGCAC
1 ATAGCAACCACCTTTATAATCAATGA-TATCCGGTGGAATCAACAC
* * *
4088230 ATAGCAACCACCTTTATAATCAACGGTAACCGGTGGAATCAACAC
1 ATAGCAACCACCTTTATAATCAATGATATCCGGTGGAATCAACAC
*
4088275 ATATCAACCACCTTTATAATCAATGATA
1 ATAGCAACCACCTTTATAATCAATGATA
4088303 CTCAGTACAC
Statistics
Matches: 95, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
44 6 0.06
45 88 0.93
46 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (45 bp):
ATAGCAACCACCTTTATAATCAATGATATCCGGTGGAATCAACAC
Found at i:4088286 original size:90 final size:88
Alignment explanation
Indices: 4088129--4088291 Score: 227
Period size: 90 Copynumber: 1.8 Consensus size: 88
4088119 CCGTTACACA
* ** **
4088129 GTGGATCAGCATATAGCACCACCCTTATAATCAATTATATTCGATGGAATCAACACATAGCAACC
1 GTGGATCAGCACATAGCACCACCCTTATAATCAACGATAACCGATGGAATCAACACATAGCAACC
4088194 ACCTTTATTTTTAATGACTTCCG
66 ACCTTTATTTTTAATGACTTCCG
* * * *
4088217 GTGGAGTCAGCACATAGCAACCACCTTTATAATCAACGGTAACCGGTGGAATCAACACATATCAA
1 GTGGA-TCAGCACATAGC-ACCACCCTTATAATCAACGATAACCGATGGAATCAACACATAGCAA
4088282 CCACCTTTAT
64 CCACCTTTAT
4088292 AATCAATGAT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
88 5 0.08
89 11 0.17
90 48 0.75
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (88 bp):
GTGGATCAGCACATAGCACCACCCTTATAATCAACGATAACCGATGGAATCAACACATAGCAACC
ACCTTTATTTTTAATGACTTCCG
Found at i:4097729 original size:30 final size:30
Alignment explanation
Indices: 4097695--4097756 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
4097685 TTAAATAAAA
* *
4097695 AAATAGTAACGACTTAATTTA-ATTATAATT
1 AAATACTAACAACTTAATTTACA-TATAATT
* *
4097725 AAATACTAATAACTTTATTTACATATAATT
1 AAATACTAACAACTTAATTTACATATAATT
4097755 AA
1 AA
4097757 TTATAAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.40
Consensus pattern (30 bp):
AAATACTAACAACTTAATTTACATATAATT
Found at i:4099669 original size:3 final size:3
Alignment explanation
Indices: 4099661--4099697 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
4099651 CATGCATCTT
4099661 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
4099698 ATTTATTAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:4110952 original size:20 final size:20
Alignment explanation
Indices: 4110927--4110966 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
4110917 GCTACAGTTT
* * *
4110927 TGAAAATTTTTATTATTTTC
1 TGAAAAATTCTATCATTTTC
4110947 TGAAAAATTCTATCATTTTC
1 TGAAAAATTCTATCATTTTC
4110967 CAATTTAGTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.53
Consensus pattern (20 bp):
TGAAAAATTCTATCATTTTC
Found at i:4122857 original size:17 final size:17
Alignment explanation
Indices: 4122824--4122857 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4122814 TATTCTTTGA
*
4122824 GAATTGCCATAGTATTT
1 GAATTGCCATAGCATTT
*
4122841 GAATTGCCCTAGCATTT
1 GAATTGCCATAGCATTT
4122858 TTTTCATTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (17 bp):
GAATTGCCATAGCATTT
Found at i:4125549 original size:22 final size:22
Alignment explanation
Indices: 4125524--4125587 Score: 128
Period size: 22 Copynumber: 2.9 Consensus size: 22
4125514 ATAGGCTAAG
4125524 TAAGCTTCATAACCTTTCCCTA
1 TAAGCTTCATAACCTTTCCCTA
4125546 TAAGCTTCATAACCTTTCCCTA
1 TAAGCTTCATAACCTTTCCCTA
4125568 TAAGCTTCATAACCTTTCCC
1 TAAGCTTCATAACCTTTCCC
4125588 CATCATCTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.27, C:0.33, G:0.05, T:0.36
Consensus pattern (22 bp):
TAAGCTTCATAACCTTTCCCTA
Found at i:4136541 original size:24 final size:24
Alignment explanation
Indices: 4136479--4136530 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
4136469 TTTCTAGAAG
* * *
4136479 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
4136503 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
4136527 ATTT
1 ATTT
4136531 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:4139769 original size:24 final size:24
Alignment explanation
Indices: 4139735--4139786 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
4139725 TTTCTAGAAG
* *
4139735 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCATAATAT
*
4139759 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATGAGCATAATAT
4139783 ATTT
1 ATTT
4139787 GAATTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAT
Found at i:4139797 original size:24 final size:24
Alignment explanation
Indices: 4139735--4139798 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
4139725 TTTCTAGAAG
* * *
4139735 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGAATTTATTAGCATAATAT
*
4139759 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGAATTTATTAGCATAATAT
4139783 ATTT-GAATTTGATTAG
1 ATTTAGAATTT-ATTAG
4139799 AATTAGGTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 5 0.14
24 30 0.86
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.48
Consensus pattern (24 bp):
ATTTAGAATTTATTAGCATAATAT
Found at i:4151861 original size:33 final size:33
Alignment explanation
Indices: 4151819--4151887 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
4151809 CAAATTGCAA
4151819 ATTCTCTAAACTATTATAATTATGACTTCTAAT
1 ATTCTCTAAACTATTATAATTATGACTTCTAAT
*
4151852 ATTCTCTAAACTATTATTATTATGACTTCTAAT
1 ATTCTCTAAACTATTATAATTATGACTTCTAAT
4151885 ATT
1 ATT
4151888 TTGTATAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.35, C:0.14, G:0.03, T:0.48
Consensus pattern (33 bp):
ATTCTCTAAACTATTATAATTATGACTTCTAAT
Found at i:4153493 original size:4 final size:4
Alignment explanation
Indices: 4153486--4153519 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
4153476 TGTTTGATAC
4153486 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT
4153520 CCATTATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:4153911 original size:108 final size:106
Alignment explanation
Indices: 4153785--4153981 Score: 306
Period size: 108 Copynumber: 1.8 Consensus size: 106
4153775 AAAAATAATA
4153785 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCT-GGTGTCGATTTTTC
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAG-AAACATGCCCTAAGGTGCTGGGTGTCGA--TTTC
*
4153849 TCGTTAAACCAAATAGGTAAATATCCTTCCAAAAATTTCAAAAT
63 TCGTTAAACCAAATAGCTAAATATCCTTCCAAAAATTTCAAAAT
* * *
4153893 AAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACATGCTCTAAGGTGCTGGGTTTCGATTTCTCG
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAACATGCCCTAAGGTGCTGGGTGTCGATTTCTCG
* *
4153958 TTTAACCAAATTGCTAAATATCCT
66 TTAAACCAAATAGCTAAATATCCT
4153982 CTTGAATTTT
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
106 28 0.34
107 17 0.21
108 37 0.45
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (106 bp):
AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAACATGCCCTAAGGTGCTGGGTGTCGATTTCTCG
TTAAACCAAATAGCTAAATATCCTTCCAAAAATTTCAAAAT
Found at i:4157798 original size:54 final size:54
Alignment explanation
Indices: 4157688--4157813 Score: 130
Period size: 54 Copynumber: 2.3 Consensus size: 54
4157678 CACACATGCA
* * * * * *
4157688 TGCCTCAGGCTGTGTAATAATCAAAATAGGGACATACAGCCGTGTCCCAGCTCG
1 TGCCTCAGGCCGTGTAACAATCAAAATAGGGACACACAGCCGTGCCCCAACCCG
* * *
4157742 TGCCTCAGGCCGTGTAACAATCGAAATCGGGACACA-AGGTCGTGCCCCAACCCG
1 TGCCTCAGGCCGTGTAACAATCAAAATAGGGACACACA-GCCGTGCCCCAACCCG
*
4157796 TGCCCTCA-CCCGTGTAAC
1 TG-CCTCAGGCCGTGTAAC
4157814 TCTCTGAGTT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
53 1 0.02
54 54 0.90
55 5 0.08
ACGTcount: A:0.25, C:0.32, G:0.24, T:0.19
Consensus pattern (54 bp):
TGCCTCAGGCCGTGTAACAATCAAAATAGGGACACACAGCCGTGCCCCAACCCG
Found at i:4169199 original size:36 final size:36
Alignment explanation
Indices: 4169159--4169233 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 36
4169149 ATACACTTTG
* * * *
4169159 TTCATTCAGTAATGCCTTCCTTGTATGAATTTCTCC
1 TTCATTCAATAATACATTACTTGTATGAATTTCTCC
* * *
4169195 TTCATTTAATAATATATTACTTGTATGAATTTCTTC
1 TTCATTCAATAATACATTACTTGTATGAATTTCTCC
4169231 TTC
1 TTC
4169234 TTATGCTATT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.24, C:0.19, G:0.08, T:0.49
Consensus pattern (36 bp):
TTCATTCAATAATACATTACTTGTATGAATTTCTCC
Found at i:4174977 original size:21 final size:20
Alignment explanation
Indices: 4174951--4174994 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
4174941 GTTAACCGCG
*
4174951 TTTATTCTATTTTCATTTTTA
1 TTTATTCTATTTTC-TTTTCA
*
4174972 TTTATTCTTTTTTCTTTTCA
1 TTTATTCTATTTTCTTTTCA
4174992 TTT
1 TTT
4174995 GCTTTGTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTATTCTATTTTCTTTTCA
Found at i:4175774 original size:9 final size:9
Alignment explanation
Indices: 4175760--4175821 Score: 63
Period size: 9 Copynumber: 7.0 Consensus size: 9
4175750 TTTACATACG
4175760 TTTTATTTT
1 TTTTATTTT
4175769 TTTTATTTT
1 TTTTATTTT
4175778 TTTTATTTT
1 TTTTATTTT
* *
4175787 TCTTA-TCT
1 TTTTATTTT
**
4175795 TTTTAACTT
1 TTTTATTTT
* *
4175804 TTATATATT
1 TTTTATTTT
4175813 TTTTATTTT
1 TTTTATTTT
4175822 ATAGATATAT
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
8 6 0.14
9 36 0.86
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTATTTT
Found at i:4175856 original size:32 final size:33
Alignment explanation
Indices: 4175808--4175884 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 33
4175798 TAACTTTTAT
*
4175808 ATATTTTTTATTTTAT-AGATATATACATATAC
1 ATATTTTTTATGTTATAAGATATATACATATAC
*
4175840 AT-TTCTTTTATGTTATAAATATATATACATATAC
1 ATATT-TTTTATGTTAT-AAGATATATACATATAC
4175874 ATATTTTTTAT
1 ATATTTTTTAT
4175885 ATTTTCATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
31 2 0.05
32 12 0.31
34 23 0.59
35 2 0.05
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (33 bp):
ATATTTTTTATGTTATAAGATATATACATATAC
Found at i:4179680 original size:21 final size:20
Alignment explanation
Indices: 4179654--4179697 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
4179644 GTTATTCGCG
*
4179654 TTTATTCTATTTTCATTTTTA
1 TTTATTCTATTTTC-TTTTCA
*
4179675 TTTATTCTTTTTTCTTTTCA
1 TTTATTCTATTTTCTTTTCA
4179695 TTT
1 TTT
4179698 GTTTTGTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTATTCTATTTTCTTTTCA
Found at i:4180477 original size:9 final size:9
Alignment explanation
Indices: 4180463--4180524 Score: 63
Period size: 9 Copynumber: 7.0 Consensus size: 9
4180453 TTTACATACG
4180463 TTTTATTTT
1 TTTTATTTT
4180472 TTTTATTTT
1 TTTTATTTT
4180481 TTTTATTTT
1 TTTTATTTT
* *
4180490 TCTTA-TCT
1 TTTTATTTT
**
4180498 TTTTAACTT
1 TTTTATTTT
* *
4180507 TTATATATT
1 TTTTATTTT
4180516 TTTTATTTT
1 TTTTATTTT
4180525 ATAGATATAT
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
8 6 0.14
9 36 0.86
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTATTTT
Found at i:4180559 original size:32 final size:33
Alignment explanation
Indices: 4180516--4180587 Score: 101
Period size: 34 Copynumber: 2.2 Consensus size: 33
4180506 TTTATATATT
*
4180516 TTTTATTTTAT-AGATATATACATATACATTTC
1 TTTTATGTTATAAGATATATACATATACATTTC
* *
4180548 TTTTATGTTATAAATATATATACATATACATTTT
1 TTTTATGTTAT-AAGATATATACATATACATTTC
4180582 TTTTAT
1 TTTTAT
4180588 ATTTTCATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
32 10 0.29
34 25 0.71
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.56
Consensus pattern (33 bp):
TTTTATGTTATAAGATATATACATATACATTTC
Found at i:4182067 original size:16 final size:16
Alignment explanation
Indices: 4182046--4182079 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
4182036 TGTGTTTCAC
4182046 TTTGACTGCATGGCAT
1 TTTGACTGCATGGCAT
4182062 TTTGACTGCATGGCAT
1 TTTGACTGCATGGCAT
4182078 TT
1 TT
4182080 CATTATAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.41
Consensus pattern (16 bp):
TTTGACTGCATGGCAT
Found at i:4182562 original size:19 final size:19
Alignment explanation
Indices: 4182522--4182563 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
4182512 GTCTCTTTTC
* *
4182522 GCATTCATTTCATGCATTT
1 GCATTCATTACATGCATAT
4182541 GCATTACATTACAT-CATAT
1 GCATT-CATTACATGCATAT
4182560 GCAT
1 GCAT
4182564 CAAACACCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (19 bp):
GCATTCATTACATGCATAT
Found at i:4183337 original size:31 final size:31
Alignment explanation
Indices: 4183244--4183339 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
4183234 TGCAAATTAC
*
4183244 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
4183275 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
4183307 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
4183338 AA
1 AA
4183340 ATTATCTAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:4186514 original size:11 final size:11
Alignment explanation
Indices: 4186500--4186524 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
4186490 TTTTTTGCGC
4186500 TTTTTTCTTTT
1 TTTTTTCTTTT
4186511 TTTTTTCTTTT
1 TTTTTTCTTTT
4186522 TTT
1 TTT
4186525 CTTTTGCGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:4186557 original size:34 final size:33
Alignment explanation
Indices: 4186486--4186557 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
4186476 GGTAGGCAAC
* *
4186486 TTTTTTTTTTGCGCTTTTTTCTTTTTTTTTTCT
1 TTTTTTTTTTGCGCTTTTTGCTTTTTTTTTGCT
4186519 TTTTTTCTTTTGCGCTTTTTGC-TTTTTTTTGCT
1 TTTTTT-TTTTGCGCTTTTTGCTTTTTTTTTGCT
*
4186552 GTTTTT
1 TTTTTT
4186558 GCTATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
33 21 0.60
34 14 0.40
ACGTcount: A:0.00, C:0.12, G:0.10, T:0.78
Consensus pattern (33 bp):
TTTTTTTTTTGCGCTTTTTGCTTTTTTTTTGCT
Found at i:4186586 original size:9 final size:9
Alignment explanation
Indices: 4186489--4186586 Score: 52
Period size: 9 Copynumber: 11.4 Consensus size: 9
4186479 AGGCAACTTT
4186489 TTTTTTTGC
1 TTTTTTTGC
*
4186498 GCTTTTTT-C
1 -TTTTTTTGC
4186507 TTTTTTT--
1 TTTTTTTGC
4186514 TTTCTTTT--
1 TTT-TTTTGC
4186522 TTTCTTTTGC
1 TTT-TTTTGC
**
4186532 GCTTTTTGC
1 TTTTTTTGC
4186541 TTTTTTTTGC
1 -TTTTTTTGC
*
4186551 TGTTTTTGC
1 TTTTTTTGC
*
4186560 TATTTTT--
1 TTTTTTTGC
4186567 TTTTTTT--
1 TTTTTTTGC
4186574 TTTTTTTGC
1 TTTTTTTGC
4186583 TTTT
1 TTTT
4186587 ATTTAAAGAA
Statistics
Matches: 73, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
7 16 0.22
8 18 0.25
9 25 0.34
10 14 0.19
ACGTcount: A:0.01, C:0.11, G:0.09, T:0.79
Consensus pattern (9 bp):
TTTTTTTGC
Found at i:4186586 original size:19 final size:19
Alignment explanation
Indices: 4186486--4186577 Score: 69
Period size: 19 Copynumber: 4.6 Consensus size: 19
4186476 GGTAGGCAAC
**
4186486 TTTTTTTTTTGCGCTTTTT
1 TTTTTTTTTTTTGCTTTTT
*
4186505 TCTTTTTTTTTT-CTTTTT
1 TTTTTTTTTTTTGCTTTTT
*
4186523 TTCTTTTGCGCTTTTTGCTTTTT
1 TT-TTTT---TTTTTTGCTTTTT
** *
4186546 TTTGCTGTTTTTGCTATTTT
1 TTTTTTTTTTTTGCT-TTTT
4186566 TTTTTTTTTTTT
1 TTTTTTTTTTTT
4186578 TTTGCTTTTA
Statistics
Matches: 56, Mismatches: 11, Indels: 11
0.72 0.14 0.14
Matches are distributed among these distances:
18 7 0.12
19 21 0.38
20 13 0.23
22 7 0.12
23 8 0.14
ACGTcount: A:0.01, C:0.11, G:0.09, T:0.79
Consensus pattern (19 bp):
TTTTTTTTTTTTGCTTTTT
Found at i:4187225 original size:31 final size:31
Alignment explanation
Indices: 4187132--4187227 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
4187122 GGCAAATTAC
*
4187132 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
4187163 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
4187195 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
4187226 AA
1 AA
4187228 ATTATCTAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:4190115 original size:7 final size:7
Alignment explanation
Indices: 4190090--4190131 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
4190080 AGTGATGTGA
4190090 AAAAATG
1 AAAAATG
4190097 AAAAGATG
1 AAAA-ATG
4190105 -AAAATG
1 AAAAATG
4190111 AAAAATG
1 AAAAATG
4190118 AAAAAAT-
1 -AAAAATG
4190125 AAAAATG
1 AAAAATG
4190132 GAGAGGCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
6 9 0.29
7 13 0.42
8 9 0.29
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:4190116 original size:21 final size:21
Alignment explanation
Indices: 4190090--4190131 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
4190080 AGTGATGTGA
* *
4190090 AAAAATGAAAAGATGAAAATG
1 AAAAATGAAAAAATAAAAATG
4190111 AAAAATGAAAAAATAAAAATG
1 AAAAATGAAAAAATAAAAATG
4190132 GAGAGGCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (21 bp):
AAAAATGAAAAAATAAAAATG
Found at i:4190122 original size:14 final size:15
Alignment explanation
Indices: 4190087--4190131 Score: 60
Period size: 14 Copynumber: 3.1 Consensus size: 15
4190077 AGAAGTGATG
4190087 TGAAAAAATGAAAAGA
1 TGAAAAAATGAAAA-A
4190103 TG--AAAATGAAAAA
1 TGAAAAAATGAAAAA
4190116 TGAAAAAAT-AAAAA
1 TGAAAAAATGAAAAA
4190130 TG
1 TG
4190132 GAGAGGCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 3 0.11
14 17 0.63
15 5 0.19
16 2 0.07
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.16
Consensus pattern (15 bp):
TGAAAAAATGAAAAA
Found at i:4191566 original size:89 final size:90
Alignment explanation
Indices: 4191415--4193114 Score: 1370
Period size: 89 Copynumber: 19.1 Consensus size: 90
4191405 GTAGCAGAAT
* * *
4191415 ATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAGAA-AAAGTAGATCTTGTCTTCATGTACTG
1 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATC-GAAGAAAGCAGATCTTGTCTTCATATACTG
*
4191479 G-CGTGAAGTAGATCAAAGATAACAG
65 GTGGTGAAGTAGATCAAAGATAACAG
* * * *
4191504 ATCTTGTATTCCTATACTGGTGGCGAAATAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTAG
1 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTGG
*
4191569 T-GTGAAGTAGATCAAAGATAACAT
66 TGGTGAAGTAGATCAAAGATAACAG
* *
4191593 ATCTTGTCTT-CTCATACTAGTGGCGAAGTAAGATCGAAGAAAGCAGATCTTGTCTTCATGTACT
1 ATCTTGTCTTCCT-ATACTGGTGGCGAAGT-AGATCGAAGAAAGCAGATCTTGTCTTCATATACT
** * *
4191657 GG-CATGAAGTAGATCAAAAATACCAG
64 GGTGGTGAAGTAGATCAAAGATAACAG
* * * *
4191683 ATCTTGTCTTCCCATACTGATGGCGAAGTAGATCGAAAAAAGCAGATCTTGTCTTCATGTACTGG
1 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTGG
*
4191748 -CGTGAAGTAGATCAAAGATAACAG
66 TGGTGAAGTAGATCAAAGATAACAG
* * * ** * *
4191772 ATCTTGTCTTCCCATACGGGTGGCCAAGTAGATCGGAA-AAAATATATCTTGTCTTCATGTACTG
1 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATC-GAAGAAAGCAGATCTTGTCTTCATATACTG
*
4191836 G-CGTGAAGTAGATCAAAGATAACAG
65 GTGGTGAAGTAGATCAAAGATAACAG
* * * * *
4191861 ATCTTGTCTTCAC-ATACTGGTGGCGAAGTAGATCGAAGAAAACAGGTCTTGTGTTCATGTAGTG
1 ATCTTGTCTTC-CTATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTG
* *
4191925 G-CGTGAAGTAGATCAAAGATACCAG
65 GTGGTGAAGTAGATCAAAGATAACAG
* *
4191950 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAAAAAGCAGATCTTGTCTTCATGTACT-G
1 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTGG
** *
4192014 ACGTGAAGTAGATCGAAGATAACAG
66 TGGTGAAGTAGATCAAAGATAACAG
* * * *
4192039 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGG
1 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTGG
* * *
4192104 -CGTGAAGTAGATCGAAGATATCAG
66 TGGTGAAGTAGATCAAAGATAACAG
* * * * * * * ** *
4192128 ATCCTATTTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGG
1 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTGG
* * *
4192191 TGGCGAAGTAGATCGAAGAAAACAG
66 TGGTGAAGTAGATCAAAGATAACAG
* * * * * **
4192216 ATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGATAA-CAGATCTTGTCTTCCCATACTG
1 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATATACTG
* *
4192279 GTGGCGAAGTAGATCGAAGA-AAGCAG
65 GTGGTGAAGTAGATCAAAGATAA-CAG
* * * * * * *
4192305 ATCTTGTCTTCATGTA-T--TGGCATAAGGTAGATCAAAGATACCAGATCTTGTCTTCCTATACT
1 ATCTTGTCTTCCTATACTGGTGGC-GAA-GTAGATCGAAGAAAGCAGATCTTGTCTTCATATACT
*
4192367 GGTGGCGAAGTAGATCGAAA-A-AAGCAG
64 GGTGGTGAAGTAGATC-AAAGATAA-CAG
* * ** * ** *
4192394 ATCTTGTCTTCATGTACT-GACGTGAAGTAGATCGAAGATAA-CAGATCTTGTCTTCCCATATTG
1 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATATACTG
* * *
4192457 GTGGCGAAGTAGATCGAAGAAAACAG
65 GTGGTGAAGTAGATCAAAGATAACAG
* * * * * * * ** *
4192483 ATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACCGG
1 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTGG
* * *
4192547 TGGAGAAGTAGATCGAAA-AAAATAG
66 TGGTGAAGTAGATC-AAAGATAACAG
* * * * * **
4192572 ATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGATAA-CAGATCTTGTCTTCCCATACTG
1 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATATACTG
* *
4192635 GTGGCGAAGTAGATCGAAGA-AAGCAG
65 GTGGTGAAGTAGATCAAAGATAA-CAG
* * * * * * *
4192661 ATCTTGTCTTCATGTA-T--TGGCATAAGGTAGATCAAAGATACCAGATCTTGTCTTCCTATACT
1 ATCTTGTCTTCCTATACTGGTGGC-GAA-GTAGATCGAAGAAAGCAGATCTTGTCTTCATATACT
*
4192723 GGTGGCGAAGTAGATCGAAA-A-AAGCAG
64 GGTGGTGAAGTAGATC-AAAGATAA-CAG
* * ** * ** *
4192750 ATCTTGTCTTCATGTACT-GACGTGAAGTAGATCGAAGATAA-CAGATCTTGTCTTCCCATATTG
1 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATATACTG
* * *
4192813 GTGGCGAAGTAGATCGAAGAAAACAG
65 GTGGTGAAGTAGATCAAAGATAACAG
* * * * * * * ** *
4192839 ATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACCGG
1 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTGG
* *
4192903 TGGCGAAGTAGATCGGAAA-A-AATAG
66 TGGTGAAGTAGATC--AAAGATAACAG
* * * * * **
4192928 ATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGATAA-CAGATCTTGTCTTCCCATACTG
1 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATATACTG
* * *
4192991 GTGGCGAAGTAGATCGAAGA-AAGCAT
65 GTGGTGAAGTAGATCAAAGATAA-CAG
* * * * * * *
4193017 ATCTTGTCTTCATGTA-T--TGGCATGAGGTAGATCAAAGATAA-AAGATCTTGTCTTCATGTAT
1 ATCTTGTCTTCCTATACTGGTGGC--GAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATATAC
* * *
4193078 TGGT-GTGAAGTAGATCAAATACAGCAG
63 TGGTGGTGAAGTAGATCAAAGATAACAG
*
4193105 ATCTTATCTT
1 ATCTTGTCTT
4193115 TCTGAAGTTG
Statistics
Matches: 1416, Mismatches: 141, Indels: 109
0.85 0.08 0.07
Matches are distributed among these distances:
87 26 0.02
88 118 0.08
89 1160 0.82
90 107 0.08
91 5 0.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (90 bp):
ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTGG
TGGTGAAGTAGATCAAAGATAACAG
Found at i:4192492 original size:267 final size:266
Alignment explanation
Indices: 4191483--4193071 Score: 1539
Period size: 267 Copynumber: 6.0 Consensus size: 266
4191473 GTACTGGCGT
* * * * * * * * *
4191483 GAAGTAGATCAAAGATAACAGATCTTGTATTCCTATACTGGTGGCGAAATAGATCGAAGA-AAGC
1 GAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGATAA-C
* * * * * *
4191547 AGATCTTGTCTTCATGTACTAGT-GTGAAGTAGATC-AAAGATAACATATCTTGTCTTC-TCATA
64 AGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAA-A-AACAGATCTTGTCTTCAT-GTA
* *** ***
4191609 CTAGTG-GCGAAGTAAGATCGAAGA-AAGCAGATCTTGTCTTCATGTACTGG-CATGAAGTAGAT
126 CT-G-GCGTGAAGT-AGATCGAAGATAA-CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGAT
*** *
4191671 C-AA-AAATACCAGATCTTGTCTTCCCATACTGATG-GCGAAGTAGATCGAAA-A-AAGCAGATC
187 CGAAGAAA-A-CAGATCTTGTCTTCATGTACTG--GCGTGAAGTAGATC-AAAGATAA-CAGATC
*** * *
4191731 TTGTCTTCATGTACTGG-CGT
246 TTGTCTTCCCATACTGGTGGC
* * ***
4191751 GAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATAC-GG-GTGGCCAAGTAGATCGGAAA-A-
1 GAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGGCGT-G--AAGTAGATC--AAAGAT
* * * * * * **
4191812 AATATATCTTGTCTTCATGTACTGG-CGTGAAGTAGATC-AAAGATAACAGATCTTGTCTTCACA
61 AACAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAA-A-AACAGATCTTGTCTTCATG
* * * * * * *
4191875 TACTGGTGGCGAAGTAGATCGAAGAAAACAGGTCTTGTGTT--CAT-GTAGTGGCGTGAAGTAGA
124 TACTGG-CGTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCCATACTGGTGGC--GAAGTAGA
* * * * * * *
4191937 TCAAAGATACCAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAA-A-AAGCAGATCTT
186 TCGAAGAAAACAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATC-AAAGATAA-CAGATCTT
*** ** *
4192000 GTCTTCATGTACT-GACGT
248 GTCTTCCCATACTGGTGGC
* *** * * * * *
4192018 GAAGTAGATCGAAGATAACAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAACA
1 GAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGATAACA
* * * * * * * * * * * *
4192083 GATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCGAAGATATCAGATCCTATTTTCCTATATTG
65 GATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAA-AAAACAGATCTTGTCTTCATGTACTG
* * * *
4192147 GTAG-GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGA
129 G-CGTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
4192210 AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCAT
193 AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCAT
4192275 ACTGGTGGC
258 ACTGGTGGC
* * * *
4192284 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCAT-AAGGTAGATCAAAGATACCA
1 GAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAA-GTAGATCAAAGATAACA
4192348 GATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAAAAAGCAGATCTTGTCTTCATGTACTG
65 GATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAAAAA-CAGATCTTGTCTTCATGTACTG
* *
4192413 ACGTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
129 GCGTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
*
4192478 AACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATA
194 AACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATA
* *
4192543 CCGGTGGA
259 CTGGTGGC
* *
4192551 GAAGTAGATCGAAAAAAATAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAG
1 GAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAG
* * *
4192616 ATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
66 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAA-AAAACAGATCTTGTCTTCATGTACTGG
* * * *
4192681 CAT-AAGGTAGATCAAAGATACCAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAA-AA
130 CGTGAA-GTAGATCGAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
* *
4192744 AAGCAGATCTTGTCTTCATGTACTGACGTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCCAT
194 AA-CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCAT
*
4192809 ATTGGTGGC
258 ACTGGTGGC
*
4192818 GAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATACCAG
1 GAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAG
* * *
4192883 ATCTTGTCTTCCCATACCGGTGGCGAAGTAGATCGGAAAAAATAGATCTTGTCTTCATGTACTGG
66 ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATC-GAAAAAACAGATCTTGTCTTCATGTACTGG
*
4192948 CGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
130 CGTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
* * * * * *
4193013 GCATATCTTGTCTTCATGTATTGGCATGAGGTAGATCAAAGATAAAAGATCTTGTCTTC
195 ACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC
4193072 ATGTATTGGT
Statistics
Matches: 1152, Mismatches: 126, Indels: 87
0.84 0.09 0.06
Matches are distributed among these distances:
264 7 0.01
265 82 0.07
266 145 0.13
267 772 0.67
268 136 0.12
269 7 0.01
270 3 0.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (266 bp):
GAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAG
ATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAAAAACAGATCTTGTCTTCATGTACTGGC
GTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAA
CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
GGTGGC
Found at i:4193863 original size:17 final size:17
Alignment explanation
Indices: 4193841--4193879 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
4193831 CAAAAATTAG
*
4193841 ATTTTTGTTATTT-TTTT
1 ATTTTTATT-TTTATTTT
4193858 ATTTTTATTTTTATTTT
1 ATTTTTATTTTTATTTT
4193875 ATTTT
1 ATTTT
4193880 CTTCTCTAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (17 bp):
ATTTTTATTTTTATTTT
Found at i:4194029 original size:21 final size:20
Alignment explanation
Indices: 4194003--4194046 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
4193993 GTTATTCGCG
*
4194003 TTTATTCTATTTTCATTTTTA
1 TTTATTCTATTTTC-TTTTCA
*
4194024 TTTATTCTTTTTTCTTTTCA
1 TTTATTCTATTTTCTTTTCA
4194044 TTT
1 TTT
4194047 GTTTTGTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTATTCTATTTTCTTTTCA
Found at i:4194672 original size:12 final size:12
Alignment explanation
Indices: 4194657--4194705 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
4194647 TTTTTTATTT
*
4194657 TTATTTTTGTTA
1 TTATTATTGTTA
* *
4194669 TTATTAATATTA
1 TTATTATTGTTA
*
4194681 TTATTATTGTTG
1 TTATTATTGTTA
*
4194693 TAATTATTGTTA
1 TTATTATTGTTA
4194705 T
1 T
4194706 CACTTCTATT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (12 bp):
TTATTATTGTTA
Found at i:4194834 original size:9 final size:9
Alignment explanation
Indices: 4194820--4194858 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
4194810 TCTACATACG
4194820 TTTTATTTT
1 TTTTATTTT
4194829 TTTTATTTTT
1 TTTTA-TTTT
4194839 TTTTATTTT
1 TTTTATTTT
*
4194848 TCTTATCTTT
1 TTTTAT-TTT
4194858 T
1 T
4194859 CAACTTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
9 14 0.52
10 13 0.48
ACGTcount: A:0.10, C:0.05, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTATTTT
Found at i:4194840 original size:10 final size:10
Alignment explanation
Indices: 4194820--4194848 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
4194810 TCTACATACG
4194820 TTTTA-TTTT
1 TTTTATTTTT
4194829 TTTTATTTTT
1 TTTTATTTTT
4194839 TTTTATTTTT
1 TTTTATTTTT
4194849 CTTATCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.26
10 14 0.74
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (10 bp):
TTTTATTTTT
Found at i:4194844 original size:19 final size:20
Alignment explanation
Indices: 4194820--4194858 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
4194810 TCTACATACG
*
4194820 TTTTATTTTTTTTAT-TTTT
1 TTTTATTTTTCTTATCTTTT
4194839 TTTTATTTTTCTTATCTTTT
1 TTTTATTTTTCTTATCTTTT
4194859 CAACTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.10, C:0.05, G:0.00, T:0.85
Consensus pattern (20 bp):
TTTTATTTTTCTTATCTTTT
Found at i:4197110 original size:21 final size:20
Alignment explanation
Indices: 4197086--4197136 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
4197076 AGCAATTTAA
*
4197086 TTTATTTTTCTTTTATGTTC
1 TTTATTTTTCTTTTATCTTC
* * *
4197106 TTTTAATGTTCTTTTTTCTTC
1 -TTTATTTTTCTTTTATCTTC
4197127 TTTATTTTTC
1 TTTATTTTTC
4197137 ATTGTCTTTA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.10, C:0.12, G:0.04, T:0.75
Consensus pattern (20 bp):
TTTATTTTTCTTTTATCTTC
Found at i:4200345 original size:18 final size:18
Alignment explanation
Indices: 4200324--4200358 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
4200314 AATAATTTTA
4200324 AAAAATT-TTAAAAATAT
1 AAAAATTGTTAAAAATAT
*
4200341 AAAAATTGTTATAAATAT
1 AAAAATTGTTAAAAATAT
4200359 TTTCAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (18 bp):
AAAAATTGTTAAAAATAT
Found at i:4201149 original size:28 final size:28
Alignment explanation
Indices: 4201088--4201147 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
4201078 AAATGAAAAT
**
4201088 AAAAATGATTAAATTTTCAAAAAATTAC
1 AAAAATGACAAAATTTTCAAAAAATTAC
*
4201116 AAAAATGACAAAATTTT-AGAAAATTAC
1 AAAAATGACAAAATTTTCAAAAAATTAC
4201143 AAAAA
1 AAAAA
4201148 ATTAAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 14 0.48
28 15 0.52
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.27
Consensus pattern (28 bp):
AAAAATGACAAAATTTTCAAAAAATTAC
Found at i:4203728 original size:3 final size:3
Alignment explanation
Indices: 4203720--4203760 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
4203710 TTATTGTTTG
* *
4203720 TTA TTA TTA TTA TTA TTA TTA TTAA GTA TTA ATA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA T
4203761 ACCTATATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 31 0.94
4 2 0.06
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:4213030 original size:44 final size:43
Alignment explanation
Indices: 4212981--4213119 Score: 102
Period size: 43 Copynumber: 3.2 Consensus size: 43
4212971 AATAGCAGAT
4212981 CTTGTCTTCCAGTGTGGGCAGCGAAGTAGATCGAAGACCTCAGC
1 CTTGTCTTCC-GTGTGGGCAGCGAAGTAGATCGAAGACCTCAGC
* * * * * * * **** *
4213025 CTTGTC-TCCCTG-GGCAGTAGTGGAGTAGGTTGAAAATAGAAGAT
1 CTTGTCTTCCGTGTGG--GCAGCGAAGTAGATCGAAGACCTCAG-C
*
4213069 CTTGTCTTCTTGTGTGGGCAGCGAAGTAGATCGAAGACCTCAGC
1 CTTGTCTTC-CGTGTGGGCAGCGAAGTAGATCGAAGACCTCAGC
4213113 CTTGTCT
1 CTTGTCT
4213120 CCCTGGGCAG
Statistics
Matches: 64, Mismatches: 25, Indels: 12
0.63 0.25 0.12
Matches are distributed among these distances:
41 2 0.03
42 2 0.03
43 19 0.30
44 19 0.30
45 18 0.28
46 2 0.03
47 2 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (43 bp):
CTTGTCTTCCGTGTGGGCAGCGAAGTAGATCGAAGACCTCAGC
Found at i:4213084 original size:88 final size:88
Alignment explanation
Indices: 4212928--4213720 Score: 1261
Period size: 88 Copynumber: 9.0 Consensus size: 88
4212918 AACAAGCCGC
* *
4212928 AGACCTCAGCCTTGTCTCCCTGGGCAATAGT-GAGTAGGTTGAAAATAGCAGATCTTGTCTTCCA
1 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
*
4212992 GTGTGGGCAGCGAAGTAGATCGA
66 GTGTTGGCAGCGAAGTAGATCGA
* *
4213015 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGAAGATCTTGTCTTCTT
1 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
*
4213080 GTGTGGGCAGCGAAGTAGATCGA
66 GTGTTGGCAGCGAAGTAGATCGA
* * *
4213103 AGACCTCAGCCTTGTCTCCCTGGGCAGTAATGGAGCAAGTTGAAAATAGCAGATCTTGTCTTCCT
1 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
*
4213168 GTGTTGGTAGCGAAGTAGATCGA
66 GTGTTGGCAGCGAAGTAGATCGA
*
4213191 AGACCTCAGCCTTGTCTCCC-GGGCAGTAGTGGAGTAAGTTGAAAATAGCAGATCTTGTCTTCCT
1 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
*
4213255 GTGTTGGCAGCGAAGTAGATTGA
66 GTGTTGGCAGCGAAGTAGATCGA
*
4213278 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCCT
1 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
* *
4213343 GTGTTGGCAGTGAAGTAGATTGA
66 GTGTTGGCAGCGAAGTAGATCGA
*
4213366 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAAGTTGAAAATAGCAGATCTTGTCTTCCT
1 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
*
4213431 GTGTTGGCAGCGAAGTAGATTGA
66 GTGTTGGCAGCGAAGTAGATCGA
4213454 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
1 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
*
4213519 GTGTTGGCAGCGAAGTAGATCAA
66 GTGTTGGCAGCGAAGTAGATCGA
* **
4213542 AGACCTCAGCATTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCAACCT
1 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
* *
4213607 GTGTTGGCATCGAACTAGATCGA
66 GTGTTGGCAGCGAAGTAGATCGA
* * * * *
4213630 ATACAC-CAACCTTGTCTCCTTGGGCAGTAGTGGAGTAGGTTGAAAATAACAGATCTTATCTTCC
1 AGAC-CTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCC
* * *
4213694 TATATTGGCAG-TAAGGTAGATCGA
65 TGTGTTGGCAGCGAA-GTAGATCGA
4213718 AGA
1 AGA
4213721 TAGCAAGTCT
Statistics
Matches: 658, Mismatches: 44, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
87 115 0.17
88 542 0.82
89 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (88 bp):
AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
GTGTTGGCAGCGAAGTAGATCGA
Found at i:4213408 original size:263 final size:264
Alignment explanation
Indices: 4212928--4213720 Score: 1256
Period size: 263 Copynumber: 3.0 Consensus size: 264
4212918 AACAAGCCGC
* *
4212928 AGACCTCAGCCTTGTCTCCCTGGGCAATAGT-GAGTAGGTTGAAAATAGCAGATCTTGTCTTCCA
1 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
*
4212992 GTGTGGGCAGCGAAGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTG
66 GTGTTGGCAGCGAAGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTG
* * *
4213057 AAAATAGA-AGATCTTGTCTTCTTGTGTGGGCAGCGAAGTAGATCGAAGACCTCAGCCTTGTCTC
131 AAAATA-ACAGATCTTGTCTTCCTGTGTTGGCAGTGAAGTAGATCGAAGACCTCAGCCTTGTCTC
* * *
4213121 CCTGGGCAGTAATGGAGCAAGTTGAAAATAGCAGATCTTGTCTTCCTGTGTTGGTAGCGAAGTAG
195 CCTGGGCAGTAGTGGAGTAAGTTGAAAATAGCAGATCTTGTCTTCCTGTGTTGGCAGCGAAGTAG
4213186 ATCGA
260 ATCGA
*
4213191 AGACCTCAGCCTTGTCTCCC-GGGCAGTAGTGGAGTAAGTTGAAAATAGCAGATCTTGTCTTCCT
1 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
*
4213255 GTGTTGGCAGCGAAGTAGATTGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTG
66 GTGTTGGCAGCGAAGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTG
*
4213320 AAAATAACAGATCTTGTCTTCCTGTGTTGGCAGTGAAGTAGATTGAAGACCTCAGCCTTGTCTCC
131 AAAATAACAGATCTTGTCTTCCTGTGTTGGCAGTGAAGTAGATCGAAGACCTCAGCCTTGTCTCC
4213385 CTGGGCAGTAGTGGAGTAAGTTGAAAATAGCAGATCTTGTCTTCCTGTGTTGGCAGCGAAGTAGA
196 CTGGGCAGTAGTGGAGTAAGTTGAAAATAGCAGATCTTGTCTTCCTGTGTTGGCAGCGAAGTAGA
*
4213450 TTGA
261 TCGA
4213454 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
1 AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
* *
4213519 GTGTTGGCAGCGAAGTAGATCAAAGACCTCAGCATTGTCTCCCTGGGCAGTAGTGGAGTAGGTTG
66 GTGTTGGCAGCGAAGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTG
* ** * * *
4213584 AAAATAGCAGATCTTGTCAACCTGTGTTGGCA-TCGAACTAGATCGAATACAC-CAACCTTGTCT
131 AAAATAACAGATCTTGTCTTCCTGTGTTGGCAGT-GAAGTAGATCGAAGAC-CTCAGCCTTGTCT
* * * * * * *
4213647 CCTTGGGCAGTAGTGGAGTAGGTTGAAAATAACAGATCTTATCTTCCTATATTGGCAG-TAAGGT
194 CCCTGGGCAGTAGTGGAGTAAGTTGAAAATAGCAGATCTTGTCTTCCTGTGTTGGCAGCGAA-GT
4213711 AGATCGA
258 AGATCGA
4213718 AGA
1 AGA
4213721 TAGCAAGTCT
Statistics
Matches: 492, Mismatches: 32, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
262 10 0.02
263 261 0.53
264 220 0.45
265 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (264 bp):
AGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCT
GTGTTGGCAGCGAAGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTG
AAAATAACAGATCTTGTCTTCCTGTGTTGGCAGTGAAGTAGATCGAAGACCTCAGCCTTGTCTCC
CTGGGCAGTAGTGGAGTAAGTTGAAAATAGCAGATCTTGTCTTCCTGTGTTGGCAGCGAAGTAGA
TCGA
Found at i:4213764 original size:44 final size:45
Alignment explanation
Indices: 4213711--4213834 Score: 125
Period size: 44 Copynumber: 2.8 Consensus size: 45
4213701 GCAGTAAGGT
* *
4213711 AGATCGAAGATAGC-AAGTCTTATCT-CCTGAA-GTTGCAGTGGGGC
1 AGATTGAAGATAGCGAA-TCTTATCTCCCT-AATGTTGCAGTGGAGC
*
4213755 AGATTGAAGATGGCGAATCTTATCTCCCTAATGTTGCAGTGGAGC
1 AGATTGAAGATAGCGAATCTTATCTCCCTAATGTTGCAGTGGAGC
* *
4213800 AGACTGAAGACCTA---AATCTTATCTCCCTAAGGTTG
1 AGATTGAAGA--TAGCGAATCTTATCTCCCTAATGTTG
4213835 TAGTAGATCG
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
44 42 0.61
45 26 0.38
47 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (45 bp):
AGATTGAAGATAGCGAATCTTATCTCCCTAATGTTGCAGTGGAGC
Found at i:4213938 original size:88 final size:88
Alignment explanation
Indices: 4213836--4214288 Score: 703
Period size: 88 Copynumber: 5.1 Consensus size: 88
4213826 CTAAGGTTGT
* *
4213836 AGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAAGTTCAAAATAGCAGATC
1 AGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATC
4213901 TTGTCTTCCTGTGTTGGCAGCGA
66 TTGTCTTCCTGTGTTGGCAGCGA
* *
4213924 AGTAGATTGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAACAGATC
1 AGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATC
*
4213989 TTGTCTTCCTGTGTTGGCAGTGA
66 TTGTCTTCCTGTGTTGGCAGCGA
*
4214012 AGTAGATTGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATC
1 AGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATC
4214077 TTGTCTTCCTGTGTTGGCAGCGA
66 TTGTCTTCCTGTGTTGGCAGCGA
* *
4214100 AGTAGATCAAAGACCTCAGCATTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATC
1 AGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATC
** *
4214165 TTGTCAACCTGTGTTGGCATCGA
66 TTGTCTTCCTGTGTTGGCAGCGA
* * * *
4214188 ACTAGATCGAATACAC-CAACCTTGTCTCCTTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGAT
1 AGTAGATCGAAGAC-CTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGAT
* * * *
4214252 CTTATCTTCCTATATTGGCAG-TA
65 CTTGTCTTCCTGTGTTGGCAGCGA
4214275 AGGTAGATCGAAGA
1 A-GTAGATCGAAGA
4214289 TAGCAAGTCT
Statistics
Matches: 335, Mismatches: 28, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
87 2 0.01
88 332 0.99
89 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (88 bp):
AGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATC
TTGTCTTCCTGTGTTGGCAGCGA
Found at i:4213948 original size:44 final size:44
Alignment explanation
Indices: 4213900--4214131 Score: 162
Period size: 44 Copynumber: 5.3 Consensus size: 44
4213890 AATAGCAGAT
* *
4213900 CTTGTCTTCCTGTGTTGGCAGCGAAGTAGATTGAAGACCTCAGC
1 CTTGTCTCCCTGTGTTGGCAGTGAAGTAGATTGAAGACCTCAGC
*** * * * * *** *
4213944 CTTGTCTCCCTG-GGCAGTAGTGGAGTAGGTTGAAAATAACAGAT
1 CTTGTCTCCCTGTGTTGGCAGTGAAGTAGATTGAAGACCTCAG-C
*
4213988 CTTGTCTTCCTGTGTTGGCAGTGAAGTAGATTGAAGACCTCAGC
1 CTTGTCTCCCTGTGTTGGCAGTGAAGTAGATTGAAGACCTCAGC
*** * * * * *** *
4214032 CTTGTCTCCCTG-GGCAGTAGTGGAGTAGGTTGAAAATAGCAGAT
1 CTTGTCTCCCTGTGTTGGCAGTGAAGTAGATTGAAGACCTCAG-C
* * **
4214076 CTTGTCTTCCTGTGTTGGCAGCGAAGTAGATCAAAGACCTCAGC
1 CTTGTCTCCCTGTGTTGGCAGTGAAGTAGATTGAAGACCTCAGC
*
4214120 ATTGTCTCCCTG
1 CTTGTCTCCCTG
4214132 GGCAGTAGTG
Statistics
Matches: 130, Mismatches: 54, Indels: 8
0.68 0.28 0.04
Matches are distributed among these distances:
43 39 0.30
44 54 0.42
45 37 0.28
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (44 bp):
CTTGTCTCCCTGTGTTGGCAGTGAAGTAGATTGAAGACCTCAGC
Found at i:4214344 original size:44 final size:45
Alignment explanation
Indices: 4214279--4214406 Score: 142
Period size: 44 Copynumber: 2.9 Consensus size: 45
4214269 GCAGTAAGGT
* *
4214279 AGATCGAAGATAGCAAGTCTTATCT-CCTGAA-GTTGCAGTGGGGC
1 AGATTGAAGATAGCAAGTCTTATCTCCCT-AAGGTTGCAGTGGAGC
*
4214323 AGATTGAAGATGGCGAA-TCTTATCTCCCTAAGGTTGCAGTGGAGC
1 AGATTGAAGATAGC-AAGTCTTATCTCCCTAAGGTTGCAGTGGAGC
*
4214368 AGACTGAAGACCTA--AA-TCTTATCTCCCTAAGGTTGCAGT
1 AGATTGAAGA--TAGCAAGTCTTATCTCCCTAAGGTTGCAGT
4214407 AGAGTGGATT
Statistics
Matches: 74, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
44 47 0.64
45 26 0.35
47 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (45 bp):
AGATTGAAGATAGCAAGTCTTATCTCCCTAAGGTTGCAGTGGAGC
Found at i:4214344 original size:568 final size:568
Alignment explanation
Indices: 4213268--4214409 Score: 2185
Period size: 568 Copynumber: 2.0 Consensus size: 568
4213258 TTGGCAGCGA
* * *
4213268 AGTAGATTGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAACAGATC
1 AGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAAGTTCAAAATAACAGATC
*
4213333 TTGTCTTCCTGTGTTGGCAGTGAAGTAGATTGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTG
66 TTGTCTTCCTGTGTTGGCAGCGAAGTAGATTGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTG
*
4213398 GAGTAAGTTGAAAATAGCAGATCTTGTCTTCCTGTGTTGGCAGCGAAGTAGATTGAAGACCTCAG
131 GAGTAAGTTGAAAATAACAGATCTTGTCTTCCTGTGTTGGCAGCGAAGTAGATTGAAGACCTCAG
4213463 CCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTGTTGGCA
196 CCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTGTTGGCA
4213528 GCGAAGTAGATCAAAGACCTCAGCATTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCA
261 GCGAAGTAGATCAAAGACCTCAGCATTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCA
4213593 GATCTTGTCAACCTGTGTTGGCATCGAACTAGATCGAATACACCAACCTTGTCTCCTTGGGCAGT
326 GATCTTGTCAACCTGTGTTGGCATCGAACTAGATCGAATACACCAACCTTGTCTCCTTGGGCAGT
4213658 AGTGGAGTAGGTTGAAAATAACAGATCTTATCTTCCTATATTGGCAGTAAGGTAGATCGAAGATA
391 AGTGGAGTAGGTTGAAAATAACAGATCTTATCTTCCTATATTGGCAGTAAGGTAGATCGAAGATA
*
4213723 GCAAGTCTTATCTCCTGAAGTTGCAGTGGGGCAGATTGAAGATGGCGAATCTTATCTCCCTAATG
456 GCAAGTCTTATCTCCTGAAGTTGCAGTGGGGCAGATTGAAGATGGCGAATCTTATCTCCCTAAGG
*
4213788 TTGCAGTGGAGCAGACTGAAGACCTAAATCTTATCTCCCTAAGGTTGT
521 TTGCAGTGGAGCAGACTGAAGACCTAAATCTTATCTCCCTAAGGTTGC
*
4213836 AGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAAGTTCAAAATAGCAGATC
1 AGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAAGTTCAAAATAACAGATC
4213901 TTGTCTTCCTGTGTTGGCAGCGAAGTAGATTGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTG
66 TTGTCTTCCTGTGTTGGCAGCGAAGTAGATTGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTG
* *
4213966 GAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTGTTGGCAGTGAAGTAGATTGAAGACCTCAG
131 GAGTAAGTTGAAAATAACAGATCTTGTCTTCCTGTGTTGGCAGCGAAGTAGATTGAAGACCTCAG
4214031 CCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTGTTGGCA
196 CCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTGTTGGCA
4214096 GCGAAGTAGATCAAAGACCTCAGCATTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCA
261 GCGAAGTAGATCAAAGACCTCAGCATTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCA
4214161 GATCTTGTCAACCTGTGTTGGCATCGAACTAGATCGAATACACCAACCTTGTCTCCTTGGGCAGT
326 GATCTTGTCAACCTGTGTTGGCATCGAACTAGATCGAATACACCAACCTTGTCTCCTTGGGCAGT
*
4214226 AGTGGAGTAGGTTGAAAATAGCAGATCTTATCTTCCTATATTGGCAGTAAGGTAGATCGAAGATA
391 AGTGGAGTAGGTTGAAAATAACAGATCTTATCTTCCTATATTGGCAGTAAGGTAGATCGAAGATA
4214291 GCAAGTCTTATCTCCTGAAGTTGCAGTGGGGCAGATTGAAGATGGCGAATCTTATCTCCCTAAGG
456 GCAAGTCTTATCTCCTGAAGTTGCAGTGGGGCAGATTGAAGATGGCGAATCTTATCTCCCTAAGG
4214356 TTGCAGTGGAGCAGACTGAAGACCTAAATCTTATCTCCCTAAGGTTGC
521 TTGCAGTGGAGCAGACTGAAGACCTAAATCTTATCTCCCTAAGGTTGC
4214404 AGTAGA
1 AGTAGA
4214410 GTGGATTAAA
Statistics
Matches: 563, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
568 563 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (568 bp):
AGTAGATCGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTGGAGTAAGTTCAAAATAACAGATC
TTGTCTTCCTGTGTTGGCAGCGAAGTAGATTGAAGACCTCAGCCTTGTCTCCCTGGGCAGTAGTG
GAGTAAGTTGAAAATAACAGATCTTGTCTTCCTGTGTTGGCAGCGAAGTAGATTGAAGACCTCAG
CCTTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTGTTGGCA
GCGAAGTAGATCAAAGACCTCAGCATTGTCTCCCTGGGCAGTAGTGGAGTAGGTTGAAAATAGCA
GATCTTGTCAACCTGTGTTGGCATCGAACTAGATCGAATACACCAACCTTGTCTCCTTGGGCAGT
AGTGGAGTAGGTTGAAAATAACAGATCTTATCTTCCTATATTGGCAGTAAGGTAGATCGAAGATA
GCAAGTCTTATCTCCTGAAGTTGCAGTGGGGCAGATTGAAGATGGCGAATCTTATCTCCCTAAGG
TTGCAGTGGAGCAGACTGAAGACCTAAATCTTATCTCCCTAAGGTTGC
Found at i:4235937 original size:30 final size:31
Alignment explanation
Indices: 4235901--4235960 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
4235891 AAACCTTTTA
*
4235901 TTTTCCCCAAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCAAAAACTTTTACTCCCTTCCCAC
* *
4235931 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCAAAAACTTTTACTCCCTTCCCA
4235961 TCCCACCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.22, C:0.38, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCAAAAACTTTTACTCCCTTCCCAC
Found at i:4236097 original size:19 final size:19
Alignment explanation
Indices: 4236048--4236108 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
4236038 TATTTACTTT
4236048 CCCTCAAACTTTTA--TT-C
1 CCCT-AAACTTTTATTTTCC
*
4236065 CCCAAAACTTTTTATTTTCC
1 CCCTAAAC-TTTTATTTTCC
*
4236085 CCCTAAACTTTTACTTTTCA
1 CCCTAAACTTTTA-TTTTCC
4236105 CCCT
1 CCCT
4236109 TTACTCTCAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
16 4 0.11
17 8 0.22
19 7 0.19
20 17 0.47
ACGTcount: A:0.23, C:0.34, G:0.00, T:0.43
Consensus pattern (19 bp):
CCCTAAACTTTTATTTTCC
Found at i:4243225 original size:21 final size:21
Alignment explanation
Indices: 4243134--4243232 Score: 69
Period size: 21 Copynumber: 4.8 Consensus size: 21
4243124 AACACTAATG
* * *
4243134 AATCGGTTCAAATAGAAAAAC
1 AATCGATTTAAATAGAAAGAC
* * * *
4243155 AATTGATTCAAACAGAAAGTC
1 AATCGATTTAAATAGAAAGAC
*
4243176 AATCGATTTAACAT--AAACAC
1 AATCGATTTAA-ATAGAAAGAC
**
4243196 AATTTATTTAAATAGAAAGAC
1 AATCGATTTAAATAGAAAGAC
*
4243217 AATCAATTTAAA-AGAA
1 AATCGATTTAAATAGAA
4243233 GCATATTCCA
Statistics
Matches: 60, Mismatches: 15, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
19 2 0.03
20 17 0.28
21 40 0.67
22 1 0.02
ACGTcount: A:0.53, C:0.12, G:0.10, T:0.25
Consensus pattern (21 bp):
AATCGATTTAAATAGAAAGAC
Found at i:4243320 original size:20 final size:21
Alignment explanation
Indices: 4243281--4243324 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
4243271 TAATGAATTG
4243281 ATTCAAATAGAAAAACAATCA
1 ATTCAAATAGAAAAACAATCA
*
4243302 ATTCAAATAG-AAGACAATCA
1 ATTCAAATAGAAAAACAATCA
4243322 ATT
1 ATT
4243325 TAAACATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.57, C:0.14, G:0.07, T:0.23
Consensus pattern (21 bp):
ATTCAAATAGAAAAACAATCA
Found at i:4249928 original size:19 final size:20
Alignment explanation
Indices: 4249904--4249954 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
4249894 AGTTTCCCTG
4249904 TTTTCCATTTTCGTA-GACT
1 TTTTCCATTTTCGTATGACT
*
4249923 TTTTCCCA-TTTC-TATTACT
1 TTTT-CCATTTTCGTATGACT
*
4249942 TTTTCCTTTTTCG
1 TTTTCCATTTTCG
4249955 GCGGATTCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
18 4 0.15
19 19 0.73
20 3 0.12
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.59
Consensus pattern (20 bp):
TTTTCCATTTTCGTATGACT
Found at i:4250211 original size:67 final size:66
Alignment explanation
Indices: 4250128--4250351 Score: 261
Period size: 67 Copynumber: 3.4 Consensus size: 66
4250118 CCATATGCTT
* * * *
4250128 CCATAGTTGAGATATGGTTTTACACATCATACCTCATGTTTAATGTCCTGGCAAACTCTCTATGT
1 CCATAGTCGAGCTATGGTCTTACACAT-ATACCACATGTTTAATGTCCTGGCAAACTCTCTATGT
4250193 TG
65 TG
* * * * * * *
4250195 CCATAGTCGACCTATGGTCTTACATAATATACCACATGTTTAATGTCAT-GTAGACTCTTTATAT
1 CCATAGTCGAGCTATGGTCTTACA-CATATACCACATGTTTAATGTCCTGGCAAACTCTCTATGT
4250259 TG
65 TG
** * *
4250261 ATATAGTCAAGCTATGGTCTTACACAATATACCCCATGTTTAATGTCCTGGCAAACTCTCTATGT
1 CCATAGTCGAGCTATGGTCTTACAC-ATATACCACATGTTTAATGTCCTGGCAAACTCTCTATGT
*
4250326 TT
65 TG
*
4250328 CCATAGTCGAGCTATAGTCTTACA
1 CCATAGTCGAGCTATGGTCTTACA
4250352 TATTAACCCC
Statistics
Matches: 127, Mismatches: 27, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
66 54 0.43
67 71 0.56
68 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (66 bp):
CCATAGTCGAGCTATGGTCTTACACATATACCACATGTTTAATGTCCTGGCAAACTCTCTATGTT
G
Found at i:4254554 original size:18 final size:17
Alignment explanation
Indices: 4254522--4254555 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
4254512 AACAAATAAA
*
4254522 AACTTTTTGACAAAGAC
1 AACTTTTTGAAAAAGAC
4254539 AACTTTTTAGAAAAAGA
1 AACTTTTT-GAAAAAGA
4254556 TGAAAACAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (17 bp):
AACTTTTTGAAAAAGAC
Found at i:4262053 original size:22 final size:23
Alignment explanation
Indices: 4261995--4262054 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 23
4261985 TTGTGAATTA
4261995 AATTATAATATTTTTAAATGTAT
1 AATTATAATATTTTTAAATGTAT
* * *
4262018 AATAATTATCTTTTT-AATGTAT
1 AATTATAATATTTTTAAATGTAT
*
4262040 AATTATCATATTTTT
1 AATTATAATATTTTT
4262055 TTATTTTACT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
22 19 0.61
23 12 0.39
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.55
Consensus pattern (23 bp):
AATTATAATATTTTTAAATGTAT
Found at i:4269690 original size:47 final size:47
Alignment explanation
Indices: 4269638--4270039 Score: 723
Period size: 47 Copynumber: 8.6 Consensus size: 47
4269628 GATAATTGTG
* *
4269638 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
4269685 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
4269732 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
4269779 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
4269826 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
4269873 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
4269920 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
4269967 ATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
4270014 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
4270040 TCCCGAAGGG
Statistics
Matches: 345, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 345 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:4270214 original size:37 final size:37
Alignment explanation
Indices: 4270158--4270236 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
4270148 CCGAGCTCTA
* * *
4270158 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
4270195 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
4270232 AAGAC
1 AAGAC
4270237 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:4275693 original size:146 final size:148
Alignment explanation
Indices: 4275426--4275709 Score: 394
Period size: 146 Copynumber: 1.9 Consensus size: 148
4275416 ACATCTCTTC
* * * * **
4275426 ACTTGTATTGATACCACAATGTAGGGTTTAACCTACTGCACTATTTTGAGCCTTTTTTTTTCCTT
1 ACTTGTACTGATACCACAATGTAGGGTTTAACATACTACACTATTTGGAGCC-TTTTTCGTCCTT
* *
4275491 GTGAGGCCCATTTTAAGTTCTGATAAACTTTGAACTAATTTTAAATGATTTTAAATT-TGTTTTA
65 GTGAGGCCCATTCTAAGTTCTGATAAACTTTGAACCAATTTTAAATGATTTTAAATTGT-TTTTA
*
4275555 AAGCCTTCAATCATATCCTT
129 AAACCTTCAATCATATCCTT
*
4275575 ACTTGTACTGATACCACAATGTAGGGTTTAACATACTACACTATTTGGAG-C-TTTTCGTCCTTT
1 ACTTGTACTGATACCACAATGTAGGGTTTAACATACTACACTATTTGGAGCCTTTTTCGTCCTTG
* * * * *
4275638 TGGGGCTCATTCTAAGTTTTGGTCAACTTTGAACCAATTTTAAATGATTTTAAATTGTTTTTAAA
66 TGAGGCCCATTCTAAGTTCTGATAAACTTTGAACCAATTTTAAATGATTTTAAATTGTTTTTAAA
4275703 ACCTTCA
131 ACCTTCA
4275710 TTCTATCTAA
Statistics
Matches: 119, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
146 71 0.60
147 1 0.01
148 1 0.01
149 46 0.39
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (148 bp):
ACTTGTACTGATACCACAATGTAGGGTTTAACATACTACACTATTTGGAGCCTTTTTCGTCCTTG
TGAGGCCCATTCTAAGTTCTGATAAACTTTGAACCAATTTTAAATGATTTTAAATTGTTTTTAAA
ACCTTCAATCATATCCTT
Found at i:4284201 original size:33 final size:33
Alignment explanation
Indices: 4284161--4284226 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
4284151 TTCGAAGAAA
4284161 GGATGGCTGGAAGTATGTATATAAAATAACAAT
1 GGATGGCTGGAAGTATGTATATAAAATAACAAT
4284194 GGATGGCTGGAAGTATGTATATAAAATAACAAT
1 GGATGGCTGGAAGTATGTATATAAAATAACAAT
4284227 ATTTTTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.06, G:0.24, T:0.27
Consensus pattern (33 bp):
GGATGGCTGGAAGTATGTATATAAAATAACAAT
Found at i:4288883 original size:29 final size:29
Alignment explanation
Indices: 4288819--4289086 Score: 283
Period size: 29 Copynumber: 9.2 Consensus size: 29
4288809 GTGTGCTAAA
* * * *
4288819 CGATGGTCGAAACCATCATTTTTCTTTAAT
1 CGATGGTCGACACCATCCTTTTTC-ATATT
*
4288849 CGATGGTCGAAACCATCCTTTTTCATATT
1 CGATGGTCGACACCATCCTTTTTCATATT
* * *
4288878 AGATGGTC-ACCACCATCTTTTTTTATATT
1 CGATGGTCGA-CACCATCCTTTTTCATATT
*
4288907 CGATGGT-TATCACCATCCTTTTTCATATT
1 CGATGGTCGA-CACCATCCTTTTTCATATT
** *
4288936 CGATGGTCTTCACCATCCGTTTTCATATT
1 CGATGGTCGACACCATCCTTTTTCATATT
*
4288965 CGATGGTCGAAACCATCCCTTTTT-ATATT
1 CGATGGTCGACACCAT-CCTTTTTCATATT
* *
4288994 CGATGGTCGTCACCATCCCTTTTCATATT
1 CGATGGTCGACACCATCCTTTTTCATATT
*
4289023 CGATGGTCGAAACCAGT-CTTTTTCATATT
1 CGATGGTCGACACCA-TCCTTTTTCATATT
* * *
4289052 CGATGGTTGTCACCATCCCTTTTCATATT
1 CGATGGTCGACACCATCCTTTTTCATATT
*
4289081 TGATGG
1 CGATGG
4289087 GTGTCGGTGC
Statistics
Matches: 203, Mismatches: 28, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
28 8 0.04
29 164 0.81
30 31 0.15
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (29 bp):
CGATGGTCGACACCATCCTTTTTCATATT
Found at i:4288922 original size:58 final size:58
Alignment explanation
Indices: 4288848--4289086 Score: 313
Period size: 58 Copynumber: 4.1 Consensus size: 58
4288838 TTTTCTTTAA
* * ** *
4288848 TCGATGGTCGAAACCATCCTTTTTCATATTAGATGGTCACCACCATCTTTTTTTATAT
1 TCGATGGTCGAAACCATCCTTTTTCATATTCGATGGTCATCACCATCCCTTTTCATAT
* * * *
4288906 TCGATGGT-TATCACCATCCTTTTTCATATTCGATGGTCTTCACCATCCGTTTTCATAT
1 TCGATGGTCGA-AACCATCCTTTTTCATATTCGATGGTCATCACCATCCCTTTTCATAT
*
4288964 TCGATGGTCGAAACCATCCCTTTTT-ATATTCGATGGTCGTCACCATCCCTTTTCATAT
1 TCGATGGTCGAAACCAT-CCTTTTTCATATTCGATGGTCATCACCATCCCTTTTCATAT
**
4289022 TCGATGGTCGAAACCAGT-CTTTTTCATATTCGATGGTTGTCACCATCCCTTTTCATAT
1 TCGATGGTCGAAACCA-TCCTTTTTCATATTCGATGGTCATCACCATCCCTTTTCATAT
*
4289080 TTGATGG
1 TCGATGG
4289087 GTGTCGGTGC
Statistics
Matches: 162, Mismatches: 14, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
57 7 0.04
58 146 0.90
59 9 0.06
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (58 bp):
TCGATGGTCGAAACCATCCTTTTTCATATTCGATGGTCATCACCATCCCTTTTCATAT
Found at i:4299353 original size:25 final size:25
Alignment explanation
Indices: 4299325--4299391 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
4299315 ACCAATTCTT
* * *
4299325 AGCTCGTATGAGCTTACTGATTTAC
1 AGCTCGTATGAGCATACCGATTCAC
* *
4299350 AGCTTGTGA-GAGCATACCGATTCAT
1 AGCTCGT-ATGAGCATACCGATTCAC
4299375 AGCTCGTATGAGCATAC
1 AGCTCGTATGAGCATAC
4299392 ATGTACAGGA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 1 0.03
25 32 0.94
26 1 0.03
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (25 bp):
AGCTCGTATGAGCATACCGATTCAC
Found at i:4300570 original size:11 final size:11
Alignment explanation
Indices: 4300554--4300578 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
4300544 CGGGCAGAAA
4300554 CACCTTATATC
1 CACCTTATATC
4300565 CACCTTATATC
1 CACCTTATATC
4300576 CAC
1 CAC
4300579 TTCTCTCGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.40, G:0.00, T:0.32
Consensus pattern (11 bp):
CACCTTATATC
Found at i:4303704 original size:31 final size:32
Alignment explanation
Indices: 4303649--4303719 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 32
4303639 ATTTTGATGA
*
4303649 TATTTTA-TAATTATTTAATTAGATA-AATAT
1 TATTTTATTAATTATTTAATGAGATATAATAT
**
4303679 TATTTTATTAA-TATTTTAATGAGATATTTTAT
1 TATTTTATTAATTA-TTTAATGAGATATAATAT
4303711 TATTTTATT
1 TATTTTATT
4303720 TAGTATATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 9 0.26
31 14 0.40
32 12 0.34
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (32 bp):
TATTTTATTAATTATTTAATGAGATATAATAT
Found at i:4308856 original size:16 final size:16
Alignment explanation
Indices: 4308837--4308870 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
4308827 ACTATGTGCA
4308837 GGCTACTACATGTATC
1 GGCTACTACATGTATC
*
4308853 GGCTACTACGTGTATC
1 GGCTACTACATGTATC
4308869 GG
1 GG
4308871 ATAGTGATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (16 bp):
GGCTACTACATGTATC
Found at i:4308897 original size:67 final size:66
Alignment explanation
Indices: 4308787--4308911 Score: 189
Period size: 67 Copynumber: 1.9 Consensus size: 66
4308777 ACTATGTGCA
**
4308787 GGCTACTACGTGTACCAGAATGATAGGTTGCATGTGTAGTACTATGTGCAGGCTACTACATGTAT
1 GGCTACTACGTGTACCAGAATGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACATGTAT
4308852 C
66 C
* *
4308853 GGCTACTACGTGTATCGGATAGTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 GGCTACTACGTGTACCAGA-A-TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTA
4308912 TGTGAACCGG
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
66 17 0.32
67 32 0.60
68 4 0.08
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (66 bp):
GGCTACTACGTGTACCAGAATGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACATGTAT
C
Found at i:4311064 original size:15 final size:15
Alignment explanation
Indices: 4311044--4311074 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4311034 TCTCACTCAC
*
4311044 TTTATTTCTTTTATT
1 TTTATTTATTTTATT
4311059 TTTATTTATTTTATT
1 TTTATTTATTTTATT
4311074 T
1 T
4311075 CTATAGCAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTATTTATTTTATT
Found at i:4319797 original size:15 final size:15
Alignment explanation
Indices: 4319777--4319805 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
4319767 ATGCCACACA
4319777 CACCATGTTATCAAT
1 CACCATGTTATCAAT
4319792 CACCATGTTATCAA
1 CACCATGTTATCAA
4319806 GCAACAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.28, G:0.07, T:0.31
Consensus pattern (15 bp):
CACCATGTTATCAAT
Found at i:4324810 original size:27 final size:27
Alignment explanation
Indices: 4324458--4324810 Score: 297
Period size: 27 Copynumber: 13.1 Consensus size: 27
4324448 CAATGTCTGC
* *
4324458 ACTGAAATA-CCCCATAGGGTAGAACG
1 ACTGAAATACCCCCATAGGGTAAAATG
* * *
4324484 AC-CAAAAACCCCCATAGGTTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
** * *
4324510 ACCAAAATACCCTCATAAGGTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
* * * *
4324537 ACCGAAATACCTCTATAGGGTAGAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
*
4324564 A-TCGAAATACCCCCCATAGGTTAAAATG
1 ACT-GAAATA-CCCCCATAGGGTAAAATG
* *
4324592 A-TCGAAATACCCCCATAAGGCAAAATG
1 ACT-GAAATACCCCCATAGGGTAAAATG
* *
4324619 A-TCGAAATACCCCCAAAAGGTAAAATG
1 ACT-GAAATACCCCCATAGGGTAAAATG
* * * * *
4324646 ACCGAAATACTCTCATATGGTAGAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
* * *
4324673 ACCGAAATATCCCCA-ACGGGTGAAATG
1 ACTGAAATACCCCCATA-GGGTAAAATG
4324700 A-TCGAAATACCCCCATAGGGTAAAATG
1 ACT-GAAATACCCCCATAGGGTAAAATG
* *
4324727 AATGAATTACCCCCATAGGGTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
* * * *
4324754 ATTGAATTAGCCCTATAGGGTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
* *
4324781 ACTGAAATACCCCTATAGGGTAAAACG
1 ACTGAAATACCCCCATAGGGTAAAATG
4324808 ACT
1 ACT
4324811 ATTATACCCC
Statistics
Matches: 269, Mismatches: 49, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
25 4 0.01
26 19 0.07
27 221 0.82
28 25 0.09
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.20
Consensus pattern (27 bp):
ACTGAAATACCCCCATAGGGTAAAATG
Found at i:4324986 original size:26 final size:26
Alignment explanation
Indices: 4324956--4325062 Score: 144
Period size: 26 Copynumber: 4.1 Consensus size: 26
4324946 TGGAGGAAGT
* *
4324956 ATACTGTTACTAGCAGCTTTGCTGCG
1 ATACTGTTACTGGTAGCTTTGCTGCG
4324982 ATACTGTTACTGGTAGCTTTGCTGCG
1 ATACTGTTACTGGTAGCTTTGCTGCG
* *
4325008 TTACTGTTATTGGTAGCTTTGCTGCG
1 ATACTGTTACTGGTAGCTTTGCTGCG
* *
4325034 -TCACTATTACTGGTAGCTTTGTTGCG
1 AT-ACTGTTACTGGTAGCTTTGCTGCG
4325060 ATA
1 ATA
4325063 TTGGTATGTT
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
25 1 0.01
26 70 0.97
27 1 0.01
ACGTcount: A:0.17, C:0.19, G:0.24, T:0.40
Consensus pattern (26 bp):
ATACTGTTACTGGTAGCTTTGCTGCG
Found at i:4326528 original size:24 final size:25
Alignment explanation
Indices: 4326501--4326547 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
4326491 ACTAGTCGTA
4326501 GAGAGAATTGAGAAGAG-ATATTTG
1 GAGAGAATTGAGAAGAGAATATTTG
* *
4326525 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGAAGAGAATATT
4326548 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.40, C:0.00, G:0.34, T:0.26
Consensus pattern (25 bp):
GAGAGAATTGAGAAGAGAATATTTG
Found at i:4327510 original size:27 final size:27
Alignment explanation
Indices: 4327158--4327510 Score: 297
Period size: 27 Copynumber: 13.1 Consensus size: 27
4327148 CAATGTCTGC
*
4327158 ACTGAAATA-CCCCATAGGGTAGAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
* * *
4327184 AC-CAAAAACCCCCATAGGTTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
** * *
4327210 ACCAAAATACCCTCATAAGGTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
* * * *
4327237 ACCGAAATACCTCTATAGGGTAGAAT-
1 ACTGAAATACCCCCATAGGGTAAAATG
* *
4327263 AATCGAAATACCCCCCATAGGTTAAAATG
1 ACT-GAAATA-CCCCCATAGGGTAAAATG
* *
4327292 A-TCGAAATACCCCCATAAGGCAAAATG
1 ACT-GAAATACCCCCATAGGGTAAAATG
* *
4327319 A-TCGAAATACCCCCAAAAGGTAAAATG
1 ACT-GAAATACCCCCATAGGGTAAAATG
* * * * *
4327346 ACCGAAATACTCTCATATGGTAGAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
* * *
4327373 ACCGAAATATCCCCA-ACGGGTGAAATG
1 ACTGAAATACCCCCATA-GGGTAAAATG
4327400 A-TCGAAATACCCCCATAGGGTAAAATG
1 ACT-GAAATACCCCCATAGGGTAAAATG
* *
4327427 AATGAATTACCCCCATAGGGTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
* * * *
4327454 ATTGAATTAGCCCTATAGGGTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
* *
4327481 ACTGAAATACCCCTATAGGGTAAAACG
1 ACTGAAATACCCCCATAGGGTAAAATG
4327508 ACT
1 ACT
4327511 ATTATACCCC
Statistics
Matches: 268, Mismatches: 49, Indels: 19
0.80 0.15 0.06
Matches are distributed among these distances:
25 4 0.01
26 21 0.08
27 219 0.82
28 23 0.09
29 1 0.00
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (27 bp):
ACTGAAATACCCCCATAGGGTAAAATG
Found at i:4327686 original size:26 final size:26
Alignment explanation
Indices: 4327656--4327762 Score: 144
Period size: 26 Copynumber: 4.1 Consensus size: 26
4327646 TGGAGGAAGT
* *
4327656 ATACTGTTACTAGCAGCTTTGCTGCG
1 ATACTGTTACTGGTAGCTTTGCTGCG
4327682 ATACTGTTACTGGTAGCTTTGCTGCG
1 ATACTGTTACTGGTAGCTTTGCTGCG
* *
4327708 TTACTGTTATTGGTAGCTTTGCTGCG
1 ATACTGTTACTGGTAGCTTTGCTGCG
* *
4327734 -TCACTATTACTGGTAGCTTTGTTGCG
1 AT-ACTGTTACTGGTAGCTTTGCTGCG
4327760 ATA
1 ATA
4327763 TTGGTATGTT
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
25 1 0.01
26 70 0.97
27 1 0.01
ACGTcount: A:0.17, C:0.19, G:0.24, T:0.40
Consensus pattern (26 bp):
ATACTGTTACTGGTAGCTTTGCTGCG
Found at i:4329218 original size:12 final size:12
Alignment explanation
Indices: 4329201--4329244 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
4329191 ACTAGTCGTA
4329201 GAGAGAATTGAG
1 GAGAGAATTGAG
*
4329213 GAGAGATATT-TG
1 GAGAGA-ATTGAG
*
4329225 GAGAGATTTGAG
1 GAGAGAATTGAG
4329237 GAGAGAAT
1 GAGAGAAT
4329245 ATTGGGATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 2 0.08
12 21 0.81
13 3 0.12
ACGTcount: A:0.39, C:0.00, G:0.39, T:0.23
Consensus pattern (12 bp):
GAGAGAATTGAG
Found at i:4329228 original size:24 final size:25
Alignment explanation
Indices: 4329201--4329247 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
4329191 ACTAGTCGTA
4329201 GAGAGAATTGAGGAGAG-ATATTTG
1 GAGAGAATTGAGGAGAGAATATTTG
*
4329225 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAGAGAATATT
4329248 GGGATTTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.38, C:0.00, G:0.36, T:0.26
Consensus pattern (25 bp):
GAGAGAATTGAGGAGAGAATATTTG
Found at i:4330078 original size:81 final size:79
Alignment explanation
Indices: 4329943--4330244 Score: 293
Period size: 81 Copynumber: 3.7 Consensus size: 79
4329933 TATATAGTAG
* *
4329943 AATGACC-AAATTACCCTCATAAGGTAAAATGACCGAAATACCCCCACAGAGTAAAATGATAGAA
1 AATGACCGAAA-TACCCTCATAAGGTAAAATGACTGAAATACCCCCAAAG-GTAAAATGATA-AA
* * *
4330007 ATACCTCCATAGGGTAG
63 ATACCCCCATAAGGTAA
* * *
4330024 AATGACCGAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCAGAAGGTAAAATCACTAAAA
1 AATGACCGAAATACCCTCATAAGGTAAAATGACTGAAATACCCCCA-AAGGTAAAATGA-TAAAA
4330089 TACCCCCATAAGGTAA
64 TACCCCCATAAGGTAA
* * * * **
4330105 AATGACCGAAATACCTTTATATGGTAGAATGACTGAAATACCCCCAAAGGGTGGAATGATCAAAA
1 AATGACCGAAATACCCTCATAAGGTAAAATGACTGAAATACCCCCAAA-GGTAAAATGAT-AAAA
*
4330170 TACCCCCATATGGTAA
64 TACCCCCATAAGGTAA
** * * * * * **
4330186 AATGAATGAATTACCCTTATTAGATGAAATGAAC-GAAATACCCTTATAAGGTAAAATGA
1 AATGACCGAAATACCCTCATAAGGTAAAATG-ACTGAAATACCCCCA-AAGGTAAAATGA
4330245 CTATTATACC
Statistics
Matches: 184, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
80 3 0.02
81 170 0.92
82 11 0.06
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (79 bp):
AATGACCGAAATACCCTCATAAGGTAAAATGACTGAAATACCCCCAAAGGTAAAATGATAAAATA
CCCCCATAAGGTAA
Found at i:4330200 original size:27 final size:27
Alignment explanation
Indices: 4329954--4330246 Score: 236
Period size: 27 Copynumber: 10.9 Consensus size: 27
4329944 ATGACCAAAT
* *
4329954 TACCCTCATAAGGTAAAATGACCGAAA
1 TACCCCCATAAGGTAAAATGACTGAAA
*
4329981 TACCCCCA-CAGAGTAAAATGA-TAGAAA
1 TACCCCCATAAG-GTAAAATGACT-GAAA
* * * *
4330008 TACCTCCATAGGGTAGAATGACCGAAA
1 TACCCCCATAAGGTAAAATGACTGAAA
*
4330035 TACCCCCATAGGGTAAAATGACTGAAA
1 TACCCCCATAAGGTAAAATGACTGAAA
* * *
4330062 TACCCCCAGAAGGTAAAATCACTAAAA
1 TACCCCCATAAGGTAAAATGACTGAAA
*
4330089 TACCCCCATAAGGTAAAATGACCGAAA
1 TACCCCCATAAGGTAAAATGACTGAAA
*** * *
4330116 TACCTTTATATGGTAGAATGACTGAAA
1 TACCCCCATAAGGTAAAATGACTGAAA
** *
4330143 TACCCCCA-AAGGGTGGAATGA-TCAAAA
1 TACCCCCATAA-GGTAAAATGACT-GAAA
* * *
4330170 TACCCCCATATGGTAAAATGAATGAAT
1 TACCCCCATAAGGTAAAATGACTGAAA
** * * *
4330197 TACCCTTATTAGATGAAATGAAC-GAAA
1 TACCCCCATAAGGTAAAATG-ACTGAAA
**
4330224 TACCCTTATAAGGTAAAATGACT
1 TACCCCCATAAGGTAAAATGACT
4330247 ATTATACCCC
Statistics
Matches: 209, Mismatches: 47, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
26 6 0.03
27 199 0.95
28 4 0.02
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.21
Consensus pattern (27 bp):
TACCCCCATAAGGTAAAATGACTGAAA
Found at i:4330421 original size:26 final size:26
Alignment explanation
Indices: 4330392--4330472 Score: 110
Period size: 26 Copynumber: 3.1 Consensus size: 26
4330382 TGGAGGAAGT
* *
4330392 ATACTGTTACTGGTAGCTTTTCTGTG
1 ATACTGTTACTGGTAGCTTTGCTGCG
4330418 ATACTGTTACTGGTAGCTTTGCTGCG
1 ATACTGTTACTGGTAGCTTTGCTGCG
* *
4330444 -TCACTATTACTGGCAGCTTTGCTGCG
1 AT-ACTGTTACTGGTAGCTTTGCTGCG
4330470 ATA
1 ATA
4330473 TTGGTGTGTT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.02
26 47 0.96
27 1 0.02
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (26 bp):
ATACTGTTACTGGTAGCTTTGCTGCG
Found at i:4330615 original size:30 final size:31
Alignment explanation
Indices: 4330574--4330634 Score: 106
Period size: 30 Copynumber: 2.0 Consensus size: 31
4330564 ACTACATTGT
*
4330574 ACTGATTACTGTATTGGGCTAAGGCCCACAC
1 ACTGATTACTGTAATGGGCTAAGGCCCACAC
4330605 ACTG-TTACTGTAATGGGCTAAGGCCCACAC
1 ACTGATTACTGTAATGGGCTAAGGCCCACAC
4330635 TGTACTGTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 25 0.86
31 4 0.14
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (31 bp):
ACTGATTACTGTAATGGGCTAAGGCCCACAC
Found at i:4343055 original size:27 final size:27
Alignment explanation
Indices: 4342709--4343050 Score: 366
Period size: 27 Copynumber: 12.7 Consensus size: 27
4342699 ATACCCTCGA
* ** * *
4342709 TAGGTTAAAATGACCAAAATGCCCCCG
1 TAGGGTAAAATGACCGTAATACCCCTG
* * * *
4342736 TAAGGTAGAAT-ACCGAAATACCCCTA
1 TAGGGTAAAATGACCGTAATACCCCTG
* *
4342762 TAGGGTAAAATGACTGTAATGCCCCTG
1 TAGGGTAAAATGACCGTAATACCCCTG
* * *
4342789 TAGGGT-AAATTATCGTAATACCCCTA
1 TAGGGTAAAATGACCGTAATACCCCTG
*
4342815 TAGGGTAAAATGATCGTAATACCCCTG
1 TAGGGTAAAATGACCGTAATACCCCTG
* *
4342842 TAGGGTAAAATGATCGTAATACCCCTA
1 TAGGGTAAAATGACCGTAATACCCCTG
* * *
4342869 TAGGGTAAAATGACTGTAATGCCCTTG
1 TAGGGTAAAATGACCGTAATACCCCTG
* * *
4342896 TAGGGTAAAATGACTGTAATGCCCTTG
1 TAGGGTAAAATGACCGTAATACCCCTG
4342923 TAGGGTAAAATGACCGTAATACCCCTG
1 TAGGGTAAAATGACCGTAATACCCCTG
* * * *
4342950 TAGGGTAAAATAATCGTAATGCCCCTA
1 TAGGGTAAAATGACCGTAATACCCCTG
* * *
4342977 TAGGGTAAAATAACCATAATTCCCCTG
1 TAGGGTAAAATGACCGTAATACCCCTG
*
4343004 TAGGGTAAAATG-CTCGTAATACCCTTG
1 TAGGGTAAAATGAC-CGTAATACCCCTG
*
4343031 TAGGGTAAAATGACCTTAAT
1 TAGGGTAAAATGACCGTAAT
4343051 GCCCTGGTGG
Statistics
Matches: 269, Mismatches: 42, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 42 0.16
27 226 0.84
28 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
TAGGGTAAAATGACCGTAATACCCCTG
Found at i:4343149 original size:24 final size:25
Alignment explanation
Indices: 4343115--4343161 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
4343105 CTATGGTTAA
*
4343115 ATGACTGATTTGTCTGTG-TTTGGT
1 ATGACTAATTTGTCTGTGATTTGGT
4343139 ATGACTAATTTGTCTGTGATTTG
1 ATGACTAATTTGTCTGTGATTTG
4343162 AATGACTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.17, C:0.09, G:0.26, T:0.49
Consensus pattern (25 bp):
ATGACTAATTTGTCTGTGATTTGGT
Found at i:4343166 original size:24 final size:24
Alignment explanation
Indices: 4343114--4343168 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
4343104 TCTATGGTTA
*
4343114 AATGACTGATTTGTCTGTGTTTGG
1 AATGACTAATTTGTCTGTGTTTGG
*
4343138 TATGACTAATTTGTCTGTGATTT-G
1 AATGACTAATTTGTCTGTG-TTTGG
4343162 AATGACT
1 AATGACT
4343169 GATTCTAAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 24 0.89
25 3 0.11
ACGTcount: A:0.22, C:0.09, G:0.24, T:0.45
Consensus pattern (24 bp):
AATGACTAATTTGTCTGTGTTTGG
Found at i:4343297 original size:27 final size:27
Alignment explanation
Indices: 4343245--4343297 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
4343235 GTACTGTGCT
*
4343245 GGTGGCTCTGCCACAATCACTGTTACC
1 GGTGGCTCTGCCACAATCACTATTACC
4343272 GGTGGCT-TGGCCACATAT-ACTATTAC
1 GGTGGCTCT-GCCACA-ATCACTATTAC
4343298 TGGCAGCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 1 0.04
27 20 0.87
28 2 0.09
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (27 bp):
GGTGGCTCTGCCACAATCACTATTACC
Found at i:4343326 original size:26 final size:26
Alignment explanation
Indices: 4343288--4343339 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
4343278 TTGGCCACAT
*
4343288 ATACTATTACTGGCAGCTTTGTTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
* * *
4343314 ATACTGTTGCTGGTAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
4343340 GTGCTACTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.15, C:0.19, G:0.27, T:0.38
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCG
Found at i:4343385 original size:32 final size:32
Alignment explanation
Indices: 4343344--4343642 Score: 220
Period size: 32 Copynumber: 9.4 Consensus size: 32
4343334 GCTGCGGTGC
* *
4343344 TACTGATGGCTTTGTGCCAATCATAGTACCGT
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
* *
4343376 TACTGATGGCTTTGTGCCAATCAT-GTTACCGT
1 TACTGATGGCTTTGTGCCGATCATAG-TACTGT
* **
4343408 TA-TCGATGG-TTGTGTGTCGATCATTTTACTGT
1 TACT-GATGGCTT-TGTGCCGATCATAGTACTGT
* * * *
4343440 TACTGATGGATGTGTACCGATCATA-TCACTGC
1 TACTGATGGCTTTGTGCCGATCATAGT-ACTGT
* **
4343472 TGCTGATGGCTTTGTGCCGATCAT-GTTACCAT
1 TACTGATGGCTTTGTGCCGATCATAG-TACTGT
* * *
4343504 TACTGATGGCTGTGGGCCGATCATA-TCACTGC
1 TACTGATGGCTTTGTGCCGATCATAGT-ACTGT
* * **
4343536 TGCTGATGGCTTTGTACCGATCAT-GTTACCAT
1 TACTGATGGCTTTGTGCCGATCATAG-TACTGT
* * *
4343568 TACTGATGGCTGTGGGCCGATCATA-TCACTGC
1 TACTGATGGCTTTGTGCCGATCATAGT-ACTGT
* *
4343600 TACTGATGGCTTTGTGCCAATCATATTACTG-
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
*
4343631 TACTTATGGCTT
1 TACTGATGGCTT
4343643 GTAGCCATTC
Statistics
Matches: 211, Mismatches: 40, Indels: 33
0.74 0.14 0.12
Matches are distributed among these distances:
31 18 0.09
32 188 0.89
33 5 0.02
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.36
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATAGTACTGT
Found at i:4343480 original size:64 final size:64
Alignment explanation
Indices: 4343341--4343628 Score: 330
Period size: 64 Copynumber: 4.5 Consensus size: 64
4343331 TTTGCTGCGG
* * * * * * * *
4343341 TGCTACTGATGGCTTTGTGCCAATCATAG-TACCGTTACTGATGGCTTTGTGCCAATCATGTTAC
1 TGCTGCTGATGGCTTTGTGCCGATCAT-GTTACCATTACTGATGGCTGTGGGCCGATCATATCAC
* ** * * ** * **
4343405 CG-TTATCGATGG-TTGTGTGTCGATCATTTTACTGTTACTGATGGATGTGTACCGATCATATCA
1 TGCTGCT-GATGGCTT-TGTGCCGATCATGTTACCATTACTGATGGCTGTGGGCCGATCATATCA
4343468 C
64 C
4343469 TGCTGCTGATGGCTTTGTGCCGATCATGTTACCATTACTGATGGCTGTGGGCCGATCATATCAC
1 TGCTGCTGATGGCTTTGTGCCGATCATGTTACCATTACTGATGGCTGTGGGCCGATCATATCAC
*
4343533 TGCTGCTGATGGCTTTGTACCGATCATGTTACCATTACTGATGGCTGTGGGCCGATCATATCAC
1 TGCTGCTGATGGCTTTGTGCCGATCATGTTACCATTACTGATGGCTGTGGGCCGATCATATCAC
* * *
4343597 TGCTACTGATGGCTTTGTGCCAATCATATTAC
1 TGCTGCTGATGGCTTTGTGCCGATCATGTTAC
4343629 TGTACTTATG
Statistics
Matches: 191, Mismatches: 28, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
63 4 0.02
64 183 0.96
65 4 0.02
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (64 bp):
TGCTGCTGATGGCTTTGTGCCGATCATGTTACCATTACTGATGGCTGTGGGCCGATCATATCAC
Found at i:4343574 original size:96 final size:96
Alignment explanation
Indices: 4343341--4343591 Score: 281
Period size: 96 Copynumber: 2.6 Consensus size: 96
4343331 TTTGCTGCGG
* * *
4343341 TGCTACTGATGGCTTTGTGCCAATCATAG-TACCGTTACTGATGGCTTTGTGCCAATCATGTTAC
1 TGCTACTGATGGCTTTGTACCGATCAT-GTTACCGTTACTGATGGCTTTGTGCCGATCATGTTAC
* * * * * *
4343405 CGTTATCGATGGTTGTGTGTCGATCATTTTAC
65 CATTATCGATGGCTGTGGGCCGATCATATCAC
* * * * * * * *
4343437 TGTTACTGATGGATGTGTACCGATCATATCACTGCTGCTGATGGCTTTGTGCCGATCATGTTACC
1 TGCTACTGATGGCTTTGTACCGATCATGTTACCGTTACTGATGGCTTTGTGCCGATCATGTTACC
4343502 ATTA-CTGATGGCTGTGGGCCGATCATATCAC
66 ATTATC-GATGGCTGTGGGCCGATCATATCAC
* * * *
4343533 TGCTGCTGATGGCTTTGTACCGATCATGTTACCATTACTGATGGCTGTGGGCCGATCAT
1 TGCTACTGATGGCTTTGTACCGATCATGTTACCGTTACTGATGGCTTTGTGCCGATCAT
4343592 ATCACTGCTA
Statistics
Matches: 124, Mismatches: 29, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
95 1 0.01
96 123 0.99
ACGTcount: A:0.19, C:0.21, G:0.25, T:0.35
Consensus pattern (96 bp):
TGCTACTGATGGCTTTGTACCGATCATGTTACCGTTACTGATGGCTTTGTGCCGATCATGTTACC
ATTATCGATGGCTGTGGGCCGATCATATCAC
Found at i:4363630 original size:15 final size:15
Alignment explanation
Indices: 4363618--4363648 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
4363608 CATGGGCCGA
4363618 GCCGAGTTGGGCCAT
1 GCCGAGTTGGGCCAT
4363633 GCCGAGTTGGGCCAT
1 GCCGAGTTGGGCCAT
4363648 G
1 G
4363649 TGGGCCTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.42, T:0.19
Consensus pattern (15 bp):
GCCGAGTTGGGCCAT
Found at i:4367027 original size:16 final size:16
Alignment explanation
Indices: 4367006--4367036 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
4366996 ATTTGGTTGA
4367006 GAAAATTTTTTAATTG
1 GAAAATTTTTTAATTG
4367022 GAAAATTTTTTAATT
1 GAAAATTTTTTAATT
4367037 TAAATTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.52
Consensus pattern (16 bp):
GAAAATTTTTTAATTG
Found at i:4369100 original size:23 final size:24
Alignment explanation
Indices: 4369057--4369102 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
4369047 ATCAGTTTAT
*
4369057 ATTTTTAAAATTTTAAGAAATAAG
1 ATTTTTAAAATTTCAAGAAATAAG
4369081 ATTTTTAATAA-TTCAA-AAATAA
1 ATTTTTAA-AATTTCAAGAAATAA
4369103 AATATTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 12 0.60
25 2 0.10
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.41
Consensus pattern (24 bp):
ATTTTTAAAATTTCAAGAAATAAG
Found at i:4374125 original size:34 final size:33
Alignment explanation
Indices: 4374085--4374190 Score: 117
Period size: 34 Copynumber: 3.2 Consensus size: 33
4374075 AAATATAAAA
*
4374085 ATAAAATATTTGAAATATTTTAATATAATTTAAT
1 ATAAAATATTT-AAATATTATAATATAATTTAAT
* *
4374119 ATAAAATATTT-AAT-TTCAAAATATAATTTAAA
1 ATAAAATATTTAAATATT-ATAATATAATTTAAT
* * *
4374151 ATACAATATTTTAAACATTCTAATATAATTTAAT
1 ATAAAATA-TTTAAATATTATAATATAATTTAAT
4374185 ATAAAA
1 ATAAAA
4374191 ATAATTATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
31 2 0.03
32 22 0.37
33 3 0.05
34 30 0.51
35 2 0.03
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (33 bp):
ATAAAATATTTAAATATTATAATATAATTTAAT
Found at i:4374216 original size:66 final size:66
Alignment explanation
Indices: 4374082--4374207 Score: 173
Period size: 66 Copynumber: 1.9 Consensus size: 66
4374072 AGAAAATATA
* * * *
4374082 AAAATAAAATATTTGAAATATTTTAATATAATTTAATATAAAATATTTAATTTCAAAATATAATT
1 AAAATAAAATATTTGAAACATTCTAATATAATTTAATATAAAATAATTAATTTAAAAATATAATT
4374147 T
66 T
* *
4374148 AAAATACAATATTTTAAACATTCTAATATAATTTAATATAAAAATAATT-ATATTAAAAAT
1 AAAATAAAATATTTGAAACATTCTAATATAATTTAATAT-AAAATAATTAAT-TTAAAAAT
4374208 TTTATTAAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
66 37 0.71
67 15 0.29
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (66 bp):
AAAATAAAATATTTGAAACATTCTAATATAATTTAATATAAAATAATTAATTTAAAAATATAATT
T
Found at i:4374438 original size:50 final size:50
Alignment explanation
Indices: 4374348--4374482 Score: 216
Period size: 50 Copynumber: 2.7 Consensus size: 50
4374338 ACACCAACAG
*** *
4374348 TCACTCAACTTTGGGTTAGCTGACAAAACAGTCACTTAGGTTTCATTTCAA
1 TCACTCAACTTTGGAAAAG-TGACAAAACAGTCACCTAGGTTTCATTTCAA
*
4374399 TCACTCAACTTTGGAAAAGTGACAAAACAATCACCTAGGTTTCATTTCAA
1 TCACTCAACTTTGGAAAAGTGACAAAACAGTCACCTAGGTTTCATTTCAA
4374449 TCACTCAACTTTGGAAAAGTGACAAAACAGTCAC
1 TCACTCAACTTTGGAAAAGTGACAAAACAGTCAC
4374483 TAATGTTATA
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 62 0.79
51 16 0.21
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (50 bp):
TCACTCAACTTTGGAAAAGTGACAAAACAGTCACCTAGGTTTCATTTCAA
Found at i:4375059 original size:16 final size:16
Alignment explanation
Indices: 4375008--4375045 Score: 67
Period size: 16 Copynumber: 2.3 Consensus size: 16
4374998 TTTTTTATTT
4375008 TTTTAGATTTAGGGTTA
1 TTTT-GATTTAGGGTTA
4375025 TTTTGATTTAGGGTTA
1 TTTTGATTTAGGGTTA
4375041 TTTTG
1 TTTTG
4375046 GGTTATTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.18, C:0.00, G:0.24, T:0.58
Consensus pattern (16 bp):
TTTTGATTTAGGGTTA
Found at i:4375163 original size:30 final size:30
Alignment explanation
Indices: 4375049--4375161 Score: 147
Period size: 30 Copynumber: 3.8 Consensus size: 30
4375039 TATTTTGGGT
* *
4375049 TATTTTGATTTCAATTTTAATTTCGATTT-
1 TATTTTGATTTCGATTTTGATTTCGATTTC
*
4375078 TGATTTTGATTTCGATTTCGATTTCGATTTC
1 T-ATTTTGATTTCGATTTTGATTTCGATTTC
* * *
4375109 CATTTTGATTTTGATTTTGATTTTGATTTC
1 TATTTTGATTTCGATTTTGATTTCGATTTC
*
4375139 TATTTTGATTTTGATTTTGATTT
1 TATTTTGATTTCGATTTTGATTT
4375162 TGGGTTATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
29 1 0.01
30 73 0.99
ACGTcount: A:0.19, C:0.07, G:0.12, T:0.62
Consensus pattern (30 bp):
TATTTTGATTTCGATTTTGATTTCGATTTC
Found at i:4375176 original size:16 final size:16
Alignment explanation
Indices: 4375152--4375183 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
4375142 TTTGATTTTG
*
4375152 ATTTTGATTTTGGGTT
1 ATTTCGATTTTGGGTT
4375168 ATTTCGATTTTGGGTT
1 ATTTCGATTTTGGGTT
4375184 TTATTTGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.03, G:0.25, T:0.59
Consensus pattern (16 bp):
ATTTCGATTTTGGGTT
Found at i:4375177 original size:6 final size:6
Alignment explanation
Indices: 4375050--4375163 Score: 131
Period size: 6 Copynumber: 19.0 Consensus size: 6
4375040 ATTTTGGGTT
** * * * *
4375050 ATTTTG ATTTCA ATTTTA ATTTCG ATTTTG ATTTTG ATTTCG ATTTCG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
* **
4375098 ATTTCG ATTTCC ATTTTG ATTTTG ATTTTG ATTTTG ATTTCT- ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTT-TG ATTTTG
4375146 ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG
4375164 GGTTATTTCG
Statistics
Matches: 96, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
5 1 0.01
6 94 0.98
7 1 0.01
ACGTcount: A:0.18, C:0.07, G:0.13, T:0.61
Consensus pattern (6 bp):
ATTTTG
Found at i:4376431 original size:21 final size:21
Alignment explanation
Indices: 4376402--4376444 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
4376392 TTTTGTCAAA
4376402 AATACGAATTGGATTAAATTG
1 AATACGAATTGGATTAAATTG
* *
4376423 AATATGAATTGTATTAAATTG
1 AATACGAATTGGATTAAATTG
4376444 A
1 A
4376445 GTTAAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.37
Consensus pattern (21 bp):
AATACGAATTGGATTAAATTG
Found at i:4376920 original size:25 final size:26
Alignment explanation
Indices: 4376890--4376949 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
4376880 ACAGCTCTTA
4376890 TGAGCTTCCCGATT-A-TGGCTCTTTG
1 TGAGCTTCCC-ATTAATTGGCTCTTTG
4376915 TGAGCTTCCCATTAATTGGCTCTTTG
1 TGAGCTTCCCATTAATTGGCTCTTTG
*
4376941 TAAGCTTCC
1 TGAGCTTCC
4376950 TGATAAGGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 3 0.09
25 11 0.34
26 18 0.56
ACGTcount: A:0.15, C:0.25, G:0.20, T:0.40
Consensus pattern (26 bp):
TGAGCTTCCCATTAATTGGCTCTTTG
Found at i:4377064 original size:25 final size:25
Alignment explanation
Indices: 4377035--4377083 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
4377025 TATTGGATCG
4377035 CATGAGCTTCCCATTACATGGCTCA
1 CATGAGCTTCCCATTACATGGCTCA
* * *
4377060 CATGAGCTTCTCGTTATATGGCTC
1 CATGAGCTTCCCATTACATGGCTC
4377084 GAGAGAGCGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (25 bp):
CATGAGCTTCCCATTACATGGCTCA
Found at i:4380799 original size:28 final size:28
Alignment explanation
Indices: 4380746--4380811 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 28
4380736 CACATGCTGT
*
4380746 TGACTA-TTTTT--TAATATGCATGTAG
1 TGACTATTTTTTAATAATATGCATATAG
**
4380771 TGTGTATTTTTTAATAATATGCATATAG
1 TGACTATTTTTTAATAATATGCATATAG
4380799 TGACTATTTTTTA
1 TGACTATTTTTTA
4380812 GGGGGTGTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
25 4 0.12
26 5 0.15
28 24 0.73
ACGTcount: A:0.29, C:0.06, G:0.14, T:0.52
Consensus pattern (28 bp):
TGACTATTTTTTAATAATATGCATATAG
Found at i:4381509 original size:21 final size:21
Alignment explanation
Indices: 4381481--4381571 Score: 85
Period size: 21 Copynumber: 4.3 Consensus size: 21
4381471 GTAGTTGCCT
4381481 CAACTCAGTAACAAGCTACCC
1 CAACTCAGTAACAAGCTACCC
* * *
4381502 CAAATCAGCAAGAGAG-TACCC
1 CAACTCAGTAACA-AGCTACCC
* * * *
4381523 CAACTTAGTTACAAACTGCCC
1 CAACTCAGTAACAAGCTACCC
* *
4381544 CAACTCATTAACAAGCTGCCC
1 CAACTCAGTAACAAGCTACCC
4381565 CAACTCA
1 CAACTCA
4381572 TCAAAAAGAC
Statistics
Matches: 54, Mismatches: 14, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
20 1 0.02
21 51 0.94
22 2 0.04
ACGTcount: A:0.37, C:0.35, G:0.11, T:0.16
Consensus pattern (21 bp):
CAACTCAGTAACAAGCTACCC
Found at i:4381590 original size:24 final size:21
Alignment explanation
Indices: 4381538--4381591 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 21
4381528 TAGTTACAAA
* *
4381538 CTGCCCCAACTCATTAACAAG
1 CTGCCCCAACTCATAAAAAAG
4381559 CTGCCCCAACTCATCAAAAAGACG
1 CTGCCCCAACTCAT-AAAAA-A-G
4381583 CTGCCCCAA
1 CTGCCCCAA
4381592 GAGAAAAGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 14 0.50
22 3 0.11
23 1 0.04
24 10 0.36
ACGTcount: A:0.33, C:0.41, G:0.11, T:0.15
Consensus pattern (21 bp):
CTGCCCCAACTCATAAAAAAG
Done.