Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 135 of 203
Found at i:43027397 original size:137 final size:137
Alignment explanation
Indices: 43027123--43027390 Score: 394
Period size: 137 Copynumber: 2.0 Consensus size: 137
43027113 AAGCTATAAA
* *
43027123 TGGGCCTGCTTACACAAGCTGTCAATTGGAATGTAGCTACACAGTGCTGCTCACACAAGCTGTCG
1 TGGGCCTGCTCACACAAGCTGTCAATTGGAACGTAGCTACACAGTGCTGCTCACACAAGCTGTCG
** * *
43027188 AGTATCTGCAACAAATGTTGGAACTCAGCCACCGGAAGGACATTCAGCACCAACACCTGAAAGAT
66 AGTATCTGCAACAAATGTCAGAACTCAGCCACCGGAAGGACATTCAGCACCAACACCCGAAACAT
43027253 GATAACC
131 GATAACC
* ** *
43027260 TGGGTCTGCTCACACAAGCTGTCGGTTGGAACGTAGCTACACAGTGCTGCTCACACAAGTTGTCG
1 TGGGCCTGCTCACACAAGCTGTCAATTGGAACGTAGCTACACAGTGCTGCTCACACAAGCTGTCG
* * **
43027325 AGTATCTGCAACAAATGTCAGAACTCAGCCACC-GATAGGACATTTAGGACCAGTACCCGAAACA
66 AGTATCTGCAACAAATGTCAGAACTCAGCCACCGGA-AGGACATTCAGCACCAACACCCGAAACA
43027389 TG
130 TG
43027391 GAAACCTAAT
Statistics
Matches: 116, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
136 2 0.02
137 114 0.98
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.21
Consensus pattern (137 bp):
TGGGCCTGCTCACACAAGCTGTCAATTGGAACGTAGCTACACAGTGCTGCTCACACAAGCTGTCG
AGTATCTGCAACAAATGTCAGAACTCAGCCACCGGAAGGACATTCAGCACCAACACCCGAAACAT
GATAACC
Found at i:43030530 original size:41 final size:41
Alignment explanation
Indices: 43030473--43030553 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
43030463 ATGAGGGTCT
* *
43030473 TTTGGGCCTTTCCCGTATCGTGTTCAATTATAAGTGTTTCC
1 TTTGGGCCTCTCCCGTATCGTGTCCAATTATAAGTGTTTCC
43030514 TTTGGGCCTCTCCCGTATCGTGTCCAATTATAAGTGTTTC
1 TTTGGGCCTCTCCCGTATCGTGTCCAATTATAAGTGTTTC
43030554 TTAGACTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.42
Consensus pattern (41 bp):
TTTGGGCCTCTCCCGTATCGTGTCCAATTATAAGTGTTTCC
Found at i:43030646 original size:4 final size:4
Alignment explanation
Indices: 43030631--43030664 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
43030621 AAGCATCATG
43030631 AATT AATT --TT AATT AATT AATT AATT AATT AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT AATT
43030665 TCCTAATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
4 26 0.93
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (4 bp):
AATT
Found at i:43030856 original size:4 final size:4
Alignment explanation
Indices: 43030812--43030837 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
43030802 ATTTTGAACT
43030812 TTAA TTAA TTAA TTAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TT
43030838 GAAAAATCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (4 bp):
TTAA
Found at i:43039067 original size:40 final size:40
Alignment explanation
Indices: 43039015--43039571 Score: 1042
Period size: 40 Copynumber: 13.9 Consensus size: 40
43039005 ATTACCACAA
* * ** *
43039015 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
43039055 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
43039095 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
43039135 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
43039175 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
43039215 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
43039255 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
43039295 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
43039335 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
43039375 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
43039415 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
43039455 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
43039495 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
43039535 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
43039572 ATGCTCATGC
Statistics
Matches: 506, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 506 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:43048981 original size:9 final size:9
Alignment explanation
Indices: 43048967--43048992 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
43048957 TTTACACATA
43048967 TTTTACAAC
1 TTTTACAAC
43048976 TTTTACAAC
1 TTTTACAAC
43048985 TTTTACAA
1 TTTTACAA
43048993 ATAAGTCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.46
Consensus pattern (9 bp):
TTTTACAAC
Found at i:43052477 original size:29 final size:25
Alignment explanation
Indices: 43052416--43052473 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
43052406 AGCAAAAATA
43052416 AAATGAATCCTAAGTATATATGACC
1 AAATGAATCCTAAGTATATATGACC
43052441 AAATGAATCCTAAGTATATATGACC
1 AAATGAATCCTAAGTATATATGACC
*
43052466 TAATGAAT
1 AAATGAAT
43052474 GAATGCTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (25 bp):
AAATGAATCCTAAGTATATATGACC
Found at i:43053360 original size:17 final size:18
Alignment explanation
Indices: 43053340--43053379 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
43053330 ATTAATTAAC
43053340 TAAATTAA-TTTCTCAAT
1 TAAATTAATTTTCTCAAT
43053357 TAAA-TAATTTTCTCAAT
1 TAAATTAATTTTCTCAAT
43053374 TAAATT
1 TAAATT
43053380 CTAATTCTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.14
17 17 0.81
18 1 0.05
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:43057988 original size:33 final size:32
Alignment explanation
Indices: 43057911--43058020 Score: 118
Period size: 32 Copynumber: 3.5 Consensus size: 32
43057901 AAGCTTGCAT
* *
43057911 ATTATGTCTTGCATTATATGTTTGTAGCTTTA
1 ATTATGTCTTGCATTATGTGTTTGCAGCTTTA
** *
43057943 ATTATGAATTGCATTATGTGTTTGCATCTTTAA
1 ATTATGTCTTGCATTATGTGTTTGCAGCTTT-A
*
43057976 ATTATGTCTTGCATTATGTG-TAGCA--TTTA
1 ATTATGTCTTGCATTATGTGTTTGCAGCTTTA
* *
43058005 ATTAGGTCATGCATTA
1 ATTATGTCTTGCATTA
43058021 AAGCATCTCA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
29 15 0.22
30 3 0.04
32 30 0.45
33 19 0.28
ACGTcount: A:0.25, C:0.10, G:0.16, T:0.48
Consensus pattern (32 bp):
ATTATGTCTTGCATTATGTGTTTGCAGCTTTA
Found at i:43058017 original size:29 final size:32
Alignment explanation
Indices: 43057952--43058020 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 32
43057942 AATTATGAAT
* * *
43057952 TGCATTATGTGTTTGCATCTTTAAATTATGTCT
1 TGCATTATGTGTTAGCA-CTTTAAATTAGGTCA
43057985 TGCATTATGTG-TAGCA-TTT-AATTAGGTCA
1 TGCATTATGTGTTAGCACTTTAAATTAGGTCA
43058014 TGCATTA
1 TGCATTA
43058021 AAGCATCTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 15 0.45
30 3 0.09
32 4 0.12
33 11 0.33
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.46
Consensus pattern (32 bp):
TGCATTATGTGTTAGCACTTTAAATTAGGTCA
Found at i:43059294 original size:18 final size:16
Alignment explanation
Indices: 43059255--43059297 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
43059245 AAAAAAGTAT
43059255 TGAAAAAAATTCGAAG
1 TGAAAAAAATTCGAAG
**
43059271 AAAAAAATAGATTCGAAG
1 TGAAAAA-A-ATTCGAAG
43059289 TGAAAAAAA
1 TGAAAAAAA
43059298 AGGGAAAGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 4
0.72 0.14 0.14
Matches are distributed among these distances:
16 6 0.29
17 2 0.10
18 13 0.62
ACGTcount: A:0.63, C:0.05, G:0.16, T:0.16
Consensus pattern (16 bp):
TGAAAAAAATTCGAAG
Found at i:43060380 original size:12 final size:13
Alignment explanation
Indices: 43060358--43060388 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
43060348 AGTGTGGAGC
43060358 AAAAGAAATTGAG
1 AAAAGAAATTGAG
43060371 AAAA-AAATTGAG
1 AAAAGAAATTGAG
43060383 AAAAGA
1 AAAAGA
43060389 GAGAGAGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.68, C:0.00, G:0.19, T:0.13
Consensus pattern (13 bp):
AAAAGAAATTGAG
Found at i:43061947 original size:24 final size:23
Alignment explanation
Indices: 43061884--43061998 Score: 106
Period size: 23 Copynumber: 4.9 Consensus size: 23
43061874 TCTACCCTGT
*
43061884 TTGGACAGC-TCTTATACATCAAA
1 TTGGACAGCAT-TTATACACCAAA
** *
43061907 TCAGACACCATTTATACACCAAA
1 TTGGACAGCATTTATACACCAAA
*
43061930 TTGGATAGCAGTTTATACACCAAA
1 TTGGACAGCA-TTTATACACCAAA
* *
43061954 TTGGACAGCATATATACACTAAA
1 TTGGACAGCATTTATACACCAAA
* *
43061977 TTGGCCAACATATATATACACC
1 TTGGACAGCAT-T-TATACACC
43061999 CAATCAATTA
Statistics
Matches: 73, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
23 43 0.59
24 23 0.32
25 7 0.10
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.27
Consensus pattern (23 bp):
TTGGACAGCATTTATACACCAAA
Found at i:43063011 original size:43 final size:42
Alignment explanation
Indices: 43062956--43063082 Score: 132
Period size: 43 Copynumber: 3.0 Consensus size: 42
43062946 ATATCATACA
43062956 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATAACG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAA-CACATAACG
** * *
43062999 ATGCC-ACTGTCCCAGACAAGGTCTTAGATGTAAACACA-AGTCG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACATGT-AACACATA-ACG
* * *
43063042 ATGCCAACATCCCAGATGTGGTCTTACACGATAACACATAA
1 ATGCCAACGTCCCAGACGTGGTCTTACATG-TAACACATAA
43063083 TGGAATCCTA
Statistics
Matches: 67, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
42 3 0.04
43 58 0.87
44 6 0.09
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAACACATAACG
Found at i:43064501 original size:23 final size:23
Alignment explanation
Indices: 43064465--43064511 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
43064455 TATTAACATA
* *
43064465 ATAACTTTTCTATG-TAAAATATC
1 ATAACATTTATATGTTAAAA-ATC
43064488 ATAACATTTATATGTTAAAAATC
1 ATAACATTTATATGTTAAAAATC
43064511 A
1 A
43064512 CAATCAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.45, C:0.11, G:0.04, T:0.40
Consensus pattern (23 bp):
ATAACATTTATATGTTAAAAATC
Found at i:43077478 original size:14 final size:15
Alignment explanation
Indices: 43077336--43077479 Score: 59
Period size: 15 Copynumber: 9.7 Consensus size: 15
43077326 TACATAAGTC
*
43077336 GGGTTCGCACATACA
1 GGGTTCGCACATATA
* *
43077351 GGGGTCACACATATA
1 GGGTTCGCACATATA
* *
43077366 AGGCT-GCACATAT-
1 GGGTTCGCACATATA
*
43077379 GGGTTCGCACATGT-
1 GGGTTCGCACATATA
* *
43077393 GGGTTCACAC-TTTA
1 GGGTTCGCACATATA
* *
43077407 GGGGTTTGCACCT-TA
1 -GGGTTCGCACATATA
* *
43077422 GAATGGTTCACA-ATTTA
1 G---GGTTCGCACATATA
*
43077439 GGGGTTCACACATATA
1 -GGGTTCGCACATATA
* *
43077455 GGGTTTGCACAT-TT
1 GGGTTCGCACATATA
43077469 GGGTTCGCACA
1 GGGTTCGCACA
43077480 GATGATTTCA
Statistics
Matches: 98, Mismatches: 21, Indels: 21
0.70 0.15 0.15
Matches are distributed among these distances:
13 5 0.05
14 35 0.36
15 43 0.44
16 6 0.06
17 8 0.08
18 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (15 bp):
GGGTTCGCACATATA
Found at i:43077739 original size:21 final size:21
Alignment explanation
Indices: 43077715--43077769 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 21
43077705 ATCAATTTAG
* *
43077715 GGTTCGCATATAAACAAGTAT
1 GGTTCACATATAAACAAGTAC
* *
43077736 GGTTCCCATAACTAAACATGTAC
1 GGTTCACAT-A-TAAACAAGTAC
43077759 GGTTCACATAT
1 GGTTCACATAT
43077770 TATAGAAGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 9 0.32
22 2 0.07
23 17 0.61
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (21 bp):
GGTTCACATATAAACAAGTAC
Found at i:43077762 original size:23 final size:23
Alignment explanation
Indices: 43077725--43077768 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
43077715 GGTTCGCATA
* *
43077725 TAAACAAGTATGGTTCCCATAAC
1 TAAACAAGTACGGTTCACATAAC
*
43077748 TAAACATGTACGGTTCACATA
1 TAAACAAGTACGGTTCACATA
43077769 TTATAGAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (23 bp):
TAAACAAGTACGGTTCACATAAC
Found at i:43079157 original size:21 final size:21
Alignment explanation
Indices: 43079132--43079177 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
43079122 TTGAGAAGAA
*
43079132 AGAATCAAAGATTAATATTGT
1 AGAATCAAAGAGTAATATTGT
43079153 AGAATCAAAGAGTAATATTGT
1 AGAATCAAAGAGTAATATTGT
43079174 AGAA
1 AGAA
43079178 AAACCAACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.50, C:0.04, G:0.17, T:0.28
Consensus pattern (21 bp):
AGAATCAAAGAGTAATATTGT
Found at i:43084943 original size:20 final size:20
Alignment explanation
Indices: 43084905--43084945 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
43084895 GTATTTAGCA
*
43084905 AAGTTACGGTTTCCCAACAC
1 AAGTTACGGTTTCCAAACAC
*
43084925 AAGTTACGGTTTTCAAACAC
1 AAGTTACGGTTTCCAAACAC
43084945 A
1 A
43084946 CTACCATGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (20 bp):
AAGTTACGGTTTCCAAACAC
Found at i:43086888 original size:50 final size:50
Alignment explanation
Indices: 43086817--43086985 Score: 193
Period size: 50 Copynumber: 3.4 Consensus size: 50
43086807 TTAAGGGAAT
* *
43086817 GAGATCCCATGTAAGACCATGTCAGGGACATGGCGTTGGCACTGAGATGA
1 GAGATCCCATGTAAGACCATGTCAGGGACATAGCGTTGGCACCGAGATGA
43086867 GAGATCCCATGTAAGACCATGTCTA-GGACATAGCGTTGGCACCGAGATGA
1 GAGATCCCATGTAAGACCATGTC-AGGGACATAGCGTTGGCACCGAGATGA
* * * * * * *
43086917 GAGGTCCC-TCGTAAGACCAT-TCTGGGACATATCATGGGCACCGATATCA
1 GAGATCCCAT-GTAAGACCATGTCAGGGACATAGCGTTGGCACCGAGATGA
*
43086966 -AAACTCCCATGTAAGACCAT
1 GAGA-TCCCATGTAAGACCAT
43086986 ATTTGGGATA
Statistics
Matches: 103, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
48 1 0.01
49 37 0.36
50 64 0.62
51 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.21
Consensus pattern (50 bp):
GAGATCCCATGTAAGACCATGTCAGGGACATAGCGTTGGCACCGAGATGA
Found at i:43087272 original size:12 final size:12
Alignment explanation
Indices: 43087255--43087293 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
43087245 ATGAGTTATT
43087255 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
43087267 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
43087279 TAAGTGAGTAAG
1 TAAGTAAGCAAG
43087291 TAA
1 TAA
43087294 AGAAGTGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:43087281 original size:20 final size:20
Alignment explanation
Indices: 43087256--43087299 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
43087246 TGAGTTATTT
43087256 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
** *
43087276 AAGTAAGTGAGTAAGTAAAG
1 AAGTAAGCAAGTAAGTAAAC
43087296 AAGT
1 AAGT
43087300 GAGTAAAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.52, C:0.05, G:0.25, T:0.18
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:43088743 original size:50 final size:49
Alignment explanation
Indices: 43088687--43088880 Score: 208
Period size: 50 Copynumber: 3.9 Consensus size: 49
43088677 CATTGAGATT
* *
43088687 ATGAGAGGTCCCATGTAAAACCATGTCTGGGACATGGCGTTGGCACCCAA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CCAA
** * *
43088737 ATGAGAGGTCCCCCGTAAGACCATGTCTGAGACATGGCATGGGCACCAA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAA
** * * ** *
43088786 TATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTAC
1 -ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAA
* * ** *
43088836 AGGAAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
43088881 TGTTATTATC
Statistics
Matches: 119, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
49 42 0.35
50 77 0.65
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (49 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAA
Found at i:43102295 original size:5 final size:5
Alignment explanation
Indices: 43102285--43102327 Score: 50
Period size: 5 Copynumber: 8.0 Consensus size: 5
43102275 CATATCTTTA
*
43102285 TTATT TTATT TTATT TTATTT TTAATT TTATCT TTCTT TTATT
1 TTATT TTATT TTATT TTA-TT TT-ATT TTAT-T TTATT TTATT
43102328 CAATTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 20 0.61
6 12 0.36
7 1 0.03
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.77
Consensus pattern (5 bp):
TTATT
Found at i:43102314 original size:17 final size:18
Alignment explanation
Indices: 43102281--43102315 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
43102271 TCGTCATATC
*
43102281 TTTATTATTTTATTTTAT
1 TTTATTATTTAATTTTAT
43102299 TTTATT-TTTAATTTTAT
1 TTTATTATTTAATTTTAT
43102316 CTTTCTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTATTATTTAATTTTAT
Found at i:43102324 original size:11 final size:10
Alignment explanation
Indices: 43102285--43102327 Score: 50
Period size: 11 Copynumber: 4.0 Consensus size: 10
43102275 CATATCTTTA
43102285 TTATTTTATT
1 TTATTTTATT
43102295 TTATTTTATTT
1 TTATTTTA-TT
43102306 TTAATTTTATCT
1 TT-ATTTTAT-T
*
43102318 TTCTTTTATT
1 TTATTTTATT
43102328 CAATTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
10 9 0.31
11 11 0.38
12 9 0.31
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.77
Consensus pattern (10 bp):
TTATTTTATT
Found at i:43102848 original size:18 final size:18
Alignment explanation
Indices: 43102825--43102862 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
43102815 CCCTAAACTG
43102825 AATTGCAATTTACTTCCC
1 AATTGCAATTTACTTCCC
*
43102843 AATTGCAATTTACTTTCC
1 AATTGCAATTTACTTCCC
43102861 AA
1 AA
43102863 GTTACCTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (18 bp):
AATTGCAATTTACTTCCC
Found at i:43111760 original size:46 final size:46
Alignment explanation
Indices: 43111688--43111818 Score: 208
Period size: 46 Copynumber: 2.8 Consensus size: 46
43111678 ACAAAATGAT
* *
43111688 TAAGACCATAGTTGATAGACATTATGGCACTATACCAGAGAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAGAATAAA
* * *
43111734 TAAGACCATAGTTGAAAGGCACTATGGCACTATATCAAAGAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAGAATAAA
*
43111780 TAAGACCATAGTTGAAAGACACTATGGCACCATACCAGA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAGA
43111819 AACGAGTATG
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.21
Consensus pattern (46 bp):
TAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAGAATAAA
Found at i:43113047 original size:41 final size:41
Alignment explanation
Indices: 43112988--43113375 Score: 481
Period size: 41 Copynumber: 9.5 Consensus size: 41
43112978 TGAGCTTTCG
* *
43112988 GGGCTTTAGCAGCGTTTTTAAGAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* *
43113029 GGGCTTTAGTGGCATTTTTGAGAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
*
43113070 GGGCTTTTAGCGGTGTTTTTGAGAAAGCGCCGCTAATGCTCA
1 GGGC-TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* * * *
43113112 GGGATTTAGCAGCATTTTTAAGAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* * *
43113153 AGGCTTTAGCGGTGTTTTTGAGAAAGCGCCGCTAATGCTTA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* * * * *
43113194 GGGATTTAGCGACGTTTTTTAGAAAGCTCCGCTAATGTTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
** * * *
43113235 GTACTTTAGCGGTGTTTTTGA-AAAGCGCTGCTAATACTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* * * *
43113275 GGGATTTAGCTGCGTTTTTGAGAATGCGCCACTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* * * * *
43113316 GGGCTTTAGCGGCGTTTTTGGGAAAACGTCGCTAATTCTCG
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
43113357 GGGCTTTAGCGGCGTTTTT
1 GGGCTTTAGCGGCGTTTTT
43113376 CAGGTAGCAC
Statistics
Matches: 290, Mismatches: 55, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
40 31 0.11
41 222 0.77
42 37 0.13
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
Found at i:43113327 original size:163 final size:165
Alignment explanation
Indices: 43112988--43113375 Score: 528
Period size: 163 Copynumber: 2.4 Consensus size: 165
43112978 TGAGCTTTCG
* * * *
43112988 GGGCTTTAGCAGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGTGGCATTTTTGAGAA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAA
* *
43113053 AGCGCCGCTAATGCTCAGGGCTTTTAGCGGTGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGATT
66 AGCGCCGCTAATGCTCAGGACTTTTAGCGGTGTTTTTGAGAAAGCGCCGCTAATACTCAGGGATT
*
43113118 TAGCAGCATTTTTAAGAAAGCGCCGCTAATGCTCA
131 TAGCAGCATTTTTAAGAAAGCGCCACTAATGCTCA
* * * * * *
43113153 AGGCTTTAGCGGTGTTTTTGAGAAAGCGCCGCTAATGCTTAGGGATTTAGCGACGTTTTTTAGAA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAA
* * * *
43113218 AGCTCCGCTAATGTTCAGTAC-TTTAGCGGTGTTTTTGA-AAAGCGCTGCTAATACTCAGGGATT
66 AGCGCCGCTAATGCTCAGGACTTTTAGCGGTGTTTTTGAGAAAGCGCCGCTAATACTCAGGGATT
* * * *
43113281 TAGCTGCGTTTTTGAGAATGCGCCACTAATGCTCA
131 TAGCAGCATTTTTAAGAAAGCGCCACTAATGCTCA
* * * * *
43113316 GGGCTTTAGCGGCGTTTTTGGGAAAACGTCGCTAATTCTCGGGGCTTTAGCGGCGTTTTT
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTT
43113376 CAGGTAGCAC
Statistics
Matches: 192, Mismatches: 31, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
163 103 0.54
164 17 0.09
165 72 0.38
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (165 bp):
GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAA
AGCGCCGCTAATGCTCAGGACTTTTAGCGGTGTTTTTGAGAAAGCGCCGCTAATACTCAGGGATT
TAGCAGCATTTTTAAGAAAGCGCCACTAATGCTCA
Found at i:43113440 original size:163 final size:163
Alignment explanation
Indices: 43112989--43113445 Score: 477
Period size: 163 Copynumber: 2.8 Consensus size: 163
43112979 GAGCTTTCGG
* * * * * * * *
43112989 GGCTTTAGCAGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGTGGCATTTTTGAGAAA
1 GGCTTTAGCGGCGTTTTTGAGAAAACGCCGCTAATGCTCAGGGATTTAGCGACGTTTTTCAGAAA
* * * ** *
43113054 GCGCCGCTAATGCTCAGGGCTTTTAGCGGTGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGATTT
66 GCACCGCGAATACTCA-GTATTTTAGCGGTGTTTTT-AAAAAGCGCCGCTAATGCTCAGGGATTT
*
43113119 AGCAGCATTTTTAAGAAAGCGCCGCTAATGCTCAA
129 AGCAGCATTTTTAAGAAAGCGCCACTAATGCTCAA
* * * *
43113154 GGCTTTAGCGGTGTTTTTGAGAAAGCGCCGCTAATGCTTAGGGATTTAGCGACGTTTTTTAGAAA
1 GGCTTTAGCGGCGTTTTTGAGAAAACGCCGCTAATGCTCAGGGATTTAGCGACGTTTTTCAGAAA
* * ** * * * *
43113219 GCTCCGCTAATGTTCAGTACTTTAGCGGTGTTTTTGAAAAGCGCTGCTAATACTCAGGGATTTAG
66 GCACCGCGAATACTCAGTATTTTAGCGGTGTTTTTAAAAAGCGCCGCTAATGCTCAGGGATTTAG
* * * * *
43113284 CTGCGTTTTTGAGAATGCGCCACTAATGCTCAG
131 CAGCATTTTTAAGAAAGCGCCACTAATGCTCAA
* * * * * * **
43113317 GGCTTTAGCGGCGTTTTTGGGAAAACGTCGCTAATTCTCGGGGCTTTAGCGGCGTTTTTCAGGTA
1 GGCTTTAGCGGCGTTTTTGAGAAAACGCCGCTAATGCTCAGGGATTTAGCGACGTTTTTCAGAAA
* * *
43113382 GCACTGCGAATACTC--TATTTTTAGCGGCGTTTTCTAAAAAGCACCGCTAATGCTCAGGGATTT
66 GCACCGCGAATACTCAGTA-TTTTAGCGGTGTTTT-TAAAAAGCGCCGCTAATGCTCAGGGATTT
43113445 A
129 A
43113446 AAATAATTTA
Statistics
Matches: 243, Mismatches: 47, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
161 2 0.01
162 13 0.05
163 142 0.58
164 16 0.07
165 70 0.29
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (163 bp):
GGCTTTAGCGGCGTTTTTGAGAAAACGCCGCTAATGCTCAGGGATTTAGCGACGTTTTTCAGAAA
GCACCGCGAATACTCAGTATTTTAGCGGTGTTTTTAAAAAGCGCCGCTAATGCTCAGGGATTTAG
CAGCATTTTTAAGAAAGCGCCACTAATGCTCAA
Found at i:43113639 original size:14 final size:14
Alignment explanation
Indices: 43113620--43113768 Score: 88
Period size: 14 Copynumber: 10.4 Consensus size: 14
43113610 TATCACTATA
*
43113620 GTTTAGGGTTTTTG
1 GTTTAGGGTTTATG
*
43113634 GTTTAGGGTATATG
1 GTTTAGGGTTTATG
* *
43113648 GTTTAGAGTTTAAG
1 GTTTAGGGTTTATG
*
43113662 GTTTAGGTGTTACCAT-
1 GTTTAGG-GTT--TATG
*
43113678 -TTTAAGGTTTATG
1 GTTTAGGGTTTATG
* *
43113691 GATTATGGGTTTAGG
1 GTTTA-GGGTTTATG
* *
43113706 GATTATGGTTTATG
1 GTTTAGGGTTTATG
* * *
43113720 ATTTATGGTTTTAAG
1 GTTTA-GGGTTTATG
43113735 GTTTTAGGGTTTA-G
1 G-TTTAGGGTTTATG
* *
43113749 GTTTATGGTTTAGG
1 GTTTAGGGTTTATG
43113763 GTTTAG
1 GTTTAG
43113769 ATTAACTAGT
Statistics
Matches: 102, Mismatches: 24, Indels: 18
0.71 0.17 0.12
Matches are distributed among these distances:
12 2 0.02
13 10 0.10
14 53 0.52
15 32 0.31
16 4 0.04
17 1 0.01
ACGTcount: A:0.19, C:0.01, G:0.31, T:0.48
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:43113703 original size:15 final size:15
Alignment explanation
Indices: 43113683--43113732 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
43113673 ACCATTTTAA
43113683 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
43113698 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
43113712 GGTTTAT-GATTTATG
1 GGTTTATGGA-TTATG
*
43113727 GTTTTA
1 GGTTTA
43113733 AGGTTTTAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 2 0.07
14 10 0.33
15 18 0.60
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:43113715 original size:29 final size:29
Alignment explanation
Indices: 43113683--43113768 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 29
43113673 ACCATTTTAA
*
43113683 GGTTTATGGATTATGGGTTTAGGGATTAT
1 GGTTTATGGATTATGGGTTTAGGGATTAG
* **
43113712 GGTTTAT-GATTTATGGTTTTAAGGTTTTAG
1 GGTTTATGGA-TTATGGGTTT-AGGGATTAG
* *
43113742 GGTTTA-GGTTTAT-GGTTTAGGGTTTAG
1 GGTTTATGGATTATGGGTTTAGGGATTAG
43113769 ATTAACTAGT
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
27 8 0.17
28 6 0.13
29 20 0.43
30 13 0.28
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.49
Consensus pattern (29 bp):
GGTTTATGGATTATGGGTTTAGGGATTAG
Found at i:43113749 original size:7 final size:7
Alignment explanation
Indices: 43113620--43113768 Score: 68
Period size: 7 Copynumber: 20.9 Consensus size: 7
43113610 TATCACTATA
43113620 GTTTAGG
1 GTTTAGG
**
43113627 GTTTTTG
1 GTTTAGG
43113634 GTTTAGG
1 GTTTAGG
* *
43113641 GTATATG
1 GTTTAGG
*
43113648 GTTTAGA
1 GTTTAGG
*
43113655 GTTTAAG
1 GTTTAGG
43113662 GTTTA-G
1 GTTTAGG
**
43113668 GTGTTACCA
1 GT-TTA-GG
* *
43113677 TTTTAAG
1 GTTTAGG
*
43113684 GTTTATG
1 GTTTAGG
*
43113691 GATTATGG
1 GTTTA-GG
43113699 GTTTAGG
1 GTTTAGG
* *
43113706 GATTATG
1 GTTTAGG
*
43113713 GTTTATG
1 GTTTAGG
*
43113720 ATTTATGG
1 GTTTA-GG
*
43113728 TTTTAAGG
1 GTTT-AGG
*
43113736 TTTTAGG
1 GTTTAGG
43113743 GTTTA-G
1 GTTTAGG
*
43113749 GTTTATG
1 GTTTAGG
43113756 GTTTAGG
1 GTTTAGG
43113763 GTTTAG
1 GTTTAG
43113769 ATTAACTAGT
Statistics
Matches: 107, Mismatches: 28, Indels: 14
0.72 0.19 0.09
Matches are distributed among these distances:
6 9 0.08
7 78 0.73
8 18 0.17
9 2 0.02
ACGTcount: A:0.19, C:0.01, G:0.31, T:0.48
Consensus pattern (7 bp):
GTTTAGG
Found at i:43114036 original size:7 final size:7
Alignment explanation
Indices: 43114000--43114139 Score: 95
Period size: 7 Copynumber: 19.6 Consensus size: 7
43113990 TGCCCCCGCC
43114000 TTTATGG
1 TTTATGG
*
43114007 ATTATGGG
1 TTTAT-GG
*
43114015 TTTAGGG
1 TTTATGG
*
43114022 ATTATGG
1 TTTATGG
43114029 TTTATGG
1 TTTATGG
*
43114036 TTTAAAGG
1 TTT-ATGG
* **
43114044 -CTGGGG
1 TTTATGG
43114050 TTTATGG
1 TTTATGG
43114057 TTTATGG
1 TTTATGG
*
43114064 ATTATGGG
1 TTTAT-GG
*
43114072 TTTAGGG
1 TTTATGG
*
43114079 ATTATGG
1 TTTATGG
*
43114086 TTTATGA
1 TTTATGG
43114093 TTTATGG
1 TTTATGG
*
43114100 TTTTAAGG
1 -TTTATGG
*
43114108 TTTTAGGG
1 -TTTATGG
43114116 TTTA-GG
1 TTTATGG
43114122 TTTATGG
1 TTTATGG
*
43114129 TTTAGGG
1 TTTATGG
43114136 TTTA
1 TTTA
43114140 GATTAACTAG
Statistics
Matches: 103, Mismatches: 24, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
6 8 0.08
7 69 0.67
8 26 0.25
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.48
Consensus pattern (7 bp):
TTTATGG
Found at i:43114097 original size:29 final size:29
Alignment explanation
Indices: 43114000--43114135 Score: 111
Period size: 29 Copynumber: 4.8 Consensus size: 29
43113990 TGCCCCCGCC
43114000 TTTATGGA-TTATGGGTTTAGGGATTATGG
1 TTTAT-GATTTATGGGTTTAGGGATTATGG
* ** * * *
43114029 TTTATGGTTTAAAGG-CTGGGGTTTATGG
1 TTTATGATTTATGGGTTTAGGGATTATGG
43114057 TTTATGGA-TTATGGGTTTAGGGATTATGG
1 TTTAT-GATTTATGGGTTTAGGGATTATGG
* ** *
43114086 TTTATGATTTATGGTTTTAAGGTTTTAGGG
1 TTTATGATTTATGGGTTT-AGGGATTATGG
*
43114116 TTTA-GGTTTAT-GGTTTAGGG
1 TTTATGATTTATGGGTTTAGGG
43114136 TTTAGATTAA
Statistics
Matches: 83, Mismatches: 19, Indels: 12
0.73 0.17 0.11
Matches are distributed among these distances:
27 3 0.04
28 27 0.33
29 41 0.49
30 12 0.14
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.47
Consensus pattern (29 bp):
TTTATGATTTATGGGTTTAGGGATTATGG
Found at i:43114138 original size:36 final size:37
Alignment explanation
Indices: 43114048--43114138 Score: 114
Period size: 36 Copynumber: 2.5 Consensus size: 37
43114038 TAAAGGCTGG
* *
43114048 GGTTTATGGTTTATGG-ATTATGGGTTTAGGGATTAT
1 GGTTTATGGTTTATGGTTTTAAGGGTTTAGGGATTAT
* * *
43114084 GGTTTATGATTTATGGTTTTAAGGTTTTAGGGTTTA-
1 GGTTTATGGTTTATGGTTTTAAGGGTTTAGGGATTAT
*
43114120 GGTTTATGGTTTAGGGTTT
1 GGTTTATGGTTTATGGTTT
43114139 AGATTAACTA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
36 32 0.68
37 15 0.32
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.51
Consensus pattern (37 bp):
GGTTTATGGTTTATGGTTTTAAGGGTTTAGGGATTAT
Found at i:43114797 original size:20 final size:20
Alignment explanation
Indices: 43114775--43114837 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
43114765 TTCGTGATTT
43114775 AAAATTTTAAAATGAATTTTA
1 AAAATTTTAAAATG-ATTTTA
**
43114796 AAAGATTTT-AAATTTTTTTA
1 AAA-ATTTTAAAATGATTTTA
*
43114816 AAAATTTTAAAAAGATTTTA
1 AAAATTTTAAAATGATTTTA
43114836 AA
1 AA
43114838 CTTTTATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
19 5 0.14
20 18 0.51
21 7 0.20
22 5 0.14
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (20 bp):
AAAATTTTAAAATGATTTTA
Found at i:43114805 original size:10 final size:10
Alignment explanation
Indices: 43114778--43114837 Score: 59
Period size: 10 Copynumber: 5.8 Consensus size: 10
43114768 GTGATTTAAA
43114778 ATTTTAAAATG
1 ATTTTAAAA-G
43114789 AATTTTAAAAG
1 -ATTTTAAAAG
**
43114800 ATTTTAAATT
1 ATTTTAAAAG
*
43114810 TTTTTAAAA-
1 ATTTTAAAAG
43114819 ATTTTAAAAAG
1 ATTTT-AAAAG
43114830 ATTTTAAA
1 ATTTTAAA
43114838 CTTTTATTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
9 4 0.10
10 22 0.54
11 6 0.15
12 9 0.22
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.47
Consensus pattern (10 bp):
ATTTTAAAAG
Found at i:43115682 original size:13 final size:13
Alignment explanation
Indices: 43115666--43115695 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
43115656 AAAAATTTTA
*
43115666 GCTTTTCAGAAGT
1 GCTTTTCAAAAGT
43115679 GCTTTTCAAAAGT
1 GCTTTTCAAAAGT
43115692 GCTT
1 GCTT
43115696 CTGAAAAGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (13 bp):
GCTTTTCAAAAGT
Found at i:43116182 original size:13 final size:12
Alignment explanation
Indices: 43116160--43116190 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
43116150 AATGTTAAAC
43116160 ACTTTCAAAAGT
1 ACTTTCAAAAGT
43116172 ACTTCTCAAAAGT
1 ACTT-TCAAAAGT
43116185 ACTTTC
1 ACTTTC
43116191 CCATAGCACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.35
Consensus pattern (12 bp):
ACTTTCAAAAGT
Found at i:43116224 original size:26 final size:25
Alignment explanation
Indices: 43116160--43116224 Score: 58
Period size: 26 Copynumber: 2.5 Consensus size: 25
43116150 AATGTTAAAC
* * *
43116160 ACTTTCAAAAGTACTTCTCAAAAGT
1 ACTTTCAAAAGCACTTCTAAAAAGA
* * *
43116185 ACTTTCCCATAGCACTTTTAAAAAGA
1 ACTTT-CAAAAGCACTTCTAAAAAGA
43116211 ACTTTACAAAAGCA
1 ACTTT-CAAAAGCA
43116225 ATGAAGAATT
Statistics
Matches: 30, Mismatches: 9, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
25 5 0.17
26 25 0.83
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.29
Consensus pattern (25 bp):
ACTTTCAAAAGCACTTCTAAAAAGA
Found at i:43119669 original size:42 final size:43
Alignment explanation
Indices: 43119456--43119695 Score: 254
Period size: 43 Copynumber: 5.6 Consensus size: 43
43119446 TATCTTCTTT
* * * ** * *
43119456 TAAAGGTTATG-TTTTTAGCGGCGTTTTTGCGAACAGCGTCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAAGCGCCGC
* * *
43119498 TAAAGGT-TTG-TTTTATAGTGGCGTTTGTGATAAAAAGCGCCGC
1 TAAAGGTCATGATCTT-TAGCGGCGTTTGTGAT-AAAAGCGCCGC
* * * *
43119541 TAAAGGTCATGACCTTTAGCGGCATTTTTGATAGAAGCGCCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAAGCGCCGC
* *
43119584 TAAAGGTCATGATCTTTAGCGGCGTTTGTGATAGAAGTGCCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAAGCGCCGC
* *
43119627 TAAAGGTCATTATCTTTAGC-GCGTTTGTGATAAAAGCACCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAAGCGCCGC
* *
43119669 TAAAGGCCATGATATTTAGCGGCGTTT
1 TAAAGGTCATGATCTTTAGCGGCGTTT
43119696 TTCACATAAA
Statistics
Matches: 168, Mismatches: 25, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
41 6 0.04
42 55 0.33
43 90 0.54
44 15 0.09
45 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
TAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAAGCGCCGC
Found at i:43119687 original size:85 final size:87
Alignment explanation
Indices: 43119517--43119695 Score: 254
Period size: 85 Copynumber: 2.1 Consensus size: 87
43119507 GTTTTATAGT
* * *
43119517 GGCGTTTGTGATAAAAAGCGCCGCTAAAGGTCATGACCTTTAGCGGCATTTTTGATAGAAGCGCC
1 GGCGTTTGTGATAAAAAGCGCCGCTAAAGGTCATGACCTTTAGCGGCATTTGTGATAAAAGCACC
* *
43119582 GCTAAAGGTCATGATCTTTAGC
66 GCTAAAGGCCATGATATTTAGC
* * * * *
43119604 GGCGTTTGTGAT-AGAAGTGCCGCTAAAGGTCATTATCTTTAGC-GCGTTTGTGATAAAAGCACC
1 GGCGTTTGTGATAAAAAGCGCCGCTAAAGGTCATGACCTTTAGCGGCATTTGTGATAAAAGCACC
43119667 GCTAAAGGCCATGATATTTAGC
66 GCTAAAGGCCATGATATTTAGC
43119689 GGCGTTT
1 GGCGTTT
43119696 TTCACATAAA
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
85 43 0.52
86 27 0.33
87 12 0.15
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (87 bp):
GGCGTTTGTGATAAAAAGCGCCGCTAAAGGTCATGACCTTTAGCGGCATTTGTGATAAAAGCACC
GCTAAAGGCCATGATATTTAGC
Found at i:43119714 original size:85 final size:86
Alignment explanation
Indices: 43119517--43119715 Score: 220
Period size: 85 Copynumber: 2.3 Consensus size: 86
43119507 GTTTTATAGT
* * * * * *
43119517 GGCGTTTGTGATAAAAAGCGCCGCTAAAGGTCATGACCTTTAGCGGCATTTTTGATAGAAGCGCC
1 GGCGTTTGTCACAGAAA-CGCCGCTAAAGGTCATGACCTTTAGCGGCATTTGTGATAAAAGCACC
* *
43119582 GCTAAAGGTCATGATCTTTAGC
65 GCTAAAGGCCATGATATTTAGC
* * ** * * *
43119604 GGCGTTTGTGATAGAAGTGCCGCTAAAGGTCATTATCTTTAGC-GCGTTTGTGATAAAAGCACCG
1 GGCGTTTGTCACAGAAACGCCGCTAAAGGTCATGACCTTTAGCGGCATTTGTGATAAAAGCACCG
43119668 CTAAAGGCCATGATATTTAGC
66 CTAAAGGCCATGATATTTAGC
* * *
43119689 GGCGTTTTTCACATAAACGCTGCTAAA
1 GGCGTTTGTCACAGAAACGCCGCTAAA
43119716 TTTAGCGGCA
Statistics
Matches: 94, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
85 56 0.60
86 23 0.24
87 15 0.16
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (86 bp):
GGCGTTTGTCACAGAAACGCCGCTAAAGGTCATGACCTTTAGCGGCATTTGTGATAAAAGCACCG
CTAAAGGCCATGATATTTAGC
Found at i:43119887 original size:20 final size:20
Alignment explanation
Indices: 43119862--43119906 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
43119852 TATTAAGCTA
43119862 AAGTAAATGCAATGGAAAGT
1 AAGTAAATGCAATGGAAAGT
43119882 AAGTAAATGCAATGGAAAGT
1 AAGTAAATGCAATGGAAAGT
43119902 AAGTA
1 AAGTA
43119907 TATGGAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.51, C:0.04, G:0.24, T:0.20
Consensus pattern (20 bp):
AAGTAAATGCAATGGAAAGT
Found at i:43121414 original size:9 final size:9
Alignment explanation
Indices: 43121400--43121575 Score: 89
Period size: 9 Copynumber: 18.8 Consensus size: 9
43121390 CAAGTAACTT
43121400 TTTTTATAA
1 TTTTTATAA
43121409 -TTTT-T-A
1 TTTTTATAA
43121415 TTTTTATAA
1 TTTTTATAA
43121424 TTTATT-TGAA
1 TTT-TTAT-AA
43121434 TTTTT-T-A
1 TTTTTATAA
43121441 TTATTTATAA
1 TT-TTTATAA
*
43121451 GTTTTTTTTTGAA
1 ---TTTTTAT-AA
* *
43121464 TTTTAATATG
1 TTTTTATA-A
43121474 TTTTTAATAA
1 TTTTT-ATAA
*
43121484 TTTATAATAA
1 TTT-TTATAA
43121494 TTTTTATAA
1 TTTTTATAA
*
43121503 TATTTATAA
1 TTTTTATAA
*
43121512 GTTTTCCAT-A
1 -TTTT-TATAA
43121522 TTTTTATAA
1 TTTTTATAA
43121531 TTTTATATAA
1 TTTT-TATAA
*
43121541 ATTTTA-ATA
1 TTTTTATA-A
43121550 TTTTTAATAA
1 TTTTT-ATAA
*
43121560 ATTTTATAA
1 TTTTTATAA
43121569 TTTTTAT
1 TTTTTAT
43121576 GAAAAAAATT
Statistics
Matches: 129, Mismatches: 16, Indels: 44
0.68 0.08 0.23
Matches are distributed among these distances:
6 1 0.01
7 8 0.06
8 11 0.09
9 49 0.38
10 45 0.35
11 7 0.05
12 4 0.03
13 4 0.03
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:43121491 original size:21 final size:22
Alignment explanation
Indices: 43121462--43121511 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
43121452 TTTTTTTTTG
43121462 AATTT-TAAT-ATGTTTT-TAAT
1 AATTTATAATAAT-TTTTATAAT
43121482 AATTTATAATAATTTTTATAAT
1 AATTTATAATAATTTTTATAAT
43121504 -ATTTATAA
1 AATTTATAA
43121512 GTTTTCCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 5 0.19
21 16 0.59
22 6 0.22
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
AATTTATAATAATTTTTATAAT
Found at i:43121524 original size:28 final size:27
Alignment explanation
Indices: 43121482--43121574 Score: 89
Period size: 28 Copynumber: 3.3 Consensus size: 27
43121472 TGTTTTTAAT
43121482 AATTTATAATAATTTTTATAATATTTATA
1 AATTT-TAAT-ATTTTTATAATATTTATA
* * *
43121511 AGTTTTCCATATTTTTATAATTTTATATA
1 AATTTT-AATATTTTTATAATATT-TATA
43121540 AATTTTAATATTTTTAATAA-ATTTTATA
1 AATTTTAATATTTTT-ATAATA-TTTATA
*
43121568 ATTTTTA
1 AATTTTA
43121575 TGAAAAAAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
28 32 0.60
29 21 0.40
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (27 bp):
AATTTTAATATTTTTATAATATTTATA
Found at i:43121573 original size:19 final size:18
Alignment explanation
Indices: 43121474--43121574 Score: 82
Period size: 19 Copynumber: 5.3 Consensus size: 18
43121464 TTTTAATATG
43121474 TTTTTAATAATTTATAATAA
1 TTTTTAATAATTT-T-ATAA
43121494 TTTTT-ATAATATTTATAA
1 TTTTTAATAAT-TTTATAA
** *
43121512 GTTTTCCATATTTTTATAA
1 -TTTTTAATAATTTTATAA
43121531 -TTTTATATAAATTTTA-ATA
1 TTTTTA-AT-AATTTTATA-A
43121550 TTTTTAATAAATTTTATAA
1 TTTTTAAT-AATTTTATAA
43121569 TTTTTA
1 TTTTTA
43121575 TGAAAAAAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 17
0.76 0.06 0.19
Matches are distributed among these distances:
17 3 0.04
18 7 0.10
19 41 0.60
20 17 0.25
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (18 bp):
TTTTTAATAATTTTATAA
Found at i:43122183 original size:22 final size:22
Alignment explanation
Indices: 43122148--43122203 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
43122138 TTAATTTTAT
*
43122148 TTTTAACTACAAAATAATGAAA
1 TTTTAATTACAAAATAATGAAA
*
43122170 TTTTAATTATAAAATAATGAAA
1 TTTTAATTACAAAATAATGAAA
43122192 TTTTAATTACAA
1 TTTTAATTACAA
43122204 TGGCCATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.39
Consensus pattern (22 bp):
TTTTAATTACAAAATAATGAAA
Found at i:43128740 original size:37 final size:37
Alignment explanation
Indices: 43128690--43128761 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
43128680 CAAGCTGAAG
43128690 TGTAACAACCTTGGAACTTGAATCGATTAGGCATCTT
1 TGTAACAACCTTGGAACTTGAATCGATTAGGCATCTT
43128727 TGTAACAACCTTGGAACTTGAATCGATTAGGCATC
1 TGTAACAACCTTGGAACTTGAATCGATTAGGCATC
43128762 ATCGTGACGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (37 bp):
TGTAACAACCTTGGAACTTGAATCGATTAGGCATCTT
Found at i:43129294 original size:27 final size:26
Alignment explanation
Indices: 43129259--43129336 Score: 66
Period size: 27 Copynumber: 2.8 Consensus size: 26
43129249 GGCAGACACT
* *
43129259 AGTTTGCAACTCAACTGGCGAACTCCC
1 AGTTCGCAAC-CAACTGGCGAACACCC
* * *
43129286 AGTTCGCAACGAAACTGGTGAACACCT
1 AGTTCGCAAC-CAACTGGCGAACACCC
*
43129313 AGTTCGTCAAACCAACTAGCGAAC
1 AGTTCG-C-AACCAACTGGCGAAC
43129337 CCAACTTGCA
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
27 27 0.68
28 10 0.25
29 3 0.08
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.19
Consensus pattern (26 bp):
AGTTCGCAACCAACTGGCGAACACCC
Found at i:43156545 original size:38 final size:38
Alignment explanation
Indices: 43156481--43156554 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
43156471 AATCCGAGTT
*
43156481 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
43156519 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCG
43156555 AATTAAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 31 0.97
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:43156806 original size:184 final size:184
Alignment explanation
Indices: 43156497--43156863 Score: 691
Period size: 184 Copynumber: 2.0 Consensus size: 184
43156487 CCCGCTGACT
43156497 ATATGAAGAGATTATGTCCGGGTAAAGACCCGATGGCTATGTACAGAGATTATGTCCGAATTAAA
1 ATATGAAGAGATTATGTCCGGGTAAAGACCCGATGGCTATGTACAGAGATTATGTCCGAATTAAA
*
43156562 ATTTGCTGGCTTTGTGTGGAGATTTCATCCGAGCTAAAGGTCTCGACGATGATCCGGGCTAAGTC
66 ATTTGCTGGCTTTGTGTGGAGATTTCATCCGAGCTAAAGGTCTAGACGATGATCCGGGCTAAGTC
*
43156627 CCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCA
131 CCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCA
43156681 ATATGAAGAGATTATGTCCGGGTAAAGACCCGATGGCTATGTACAGAGATTATGTCCGAATTAAA
1 ATATGAAGAGATTATGTCCGGGTAAAGACCCGATGGCTATGTACAGAGATTATGTCCGAATTAAA
*
43156746 ATTTGCTGGCTTTGTGTGGAGATTTCATCCGAGCTAAAGGTCTAG-TGATGTATCCGGGCTAAGT
66 ATTTGCTGGCTTTGTGTGGAGATTTCATCCGAGCTAAAGGTCTAGACGATG-ATCCGGGCTAAGT
43156810 CCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
130 CCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC
43156864 GTGCTAGTGA
Statistics
Matches: 179, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
183 4 0.02
184 175 0.98
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (184 bp):
ATATGAAGAGATTATGTCCGGGTAAAGACCCGATGGCTATGTACAGAGATTATGTCCGAATTAAA
ATTTGCTGGCTTTGTGTGGAGATTTCATCCGAGCTAAAGGTCTAGACGATGATCCGGGCTAAGTC
CCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCA
Found at i:43156842 original size:40 final size:40
Alignment explanation
Indices: 43156787--43156953 Score: 226
Period size: 40 Copynumber: 4.2 Consensus size: 40
43156777 AGCTAAAGGT
*
43156787 CTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATG
1 CTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATG
* *
43156827 CTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTG
1 CTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATG
* ** *
43156867 CTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTG
1 CTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATG
* * * *
43156907 CTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATG
1 CTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATG
*
43156947 CTGGTGA
1 CTAGTGA
43156954 CGTGTATTCG
Statistics
Matches: 113, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 113 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATG
Found at i:43162888 original size:40 final size:40
Alignment explanation
Indices: 43162833--43163229 Score: 713
Period size: 40 Copynumber: 9.9 Consensus size: 40
43162823 GCATGAGCAT
43162833 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
43162873 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
43162913 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
43162953 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
43162993 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
43163033 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
43163073 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
43163113 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
43163153 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * * *
43163193 TTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
43163230 TTGCGGTTAT
Statistics
Matches: 343, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 343 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:43172727 original size:79 final size:82
Alignment explanation
Indices: 43172616--43172800 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
43172606 GCTACTCGTT
* * *
43172616 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
43172679 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
43172696 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
43172759 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
43172776 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
43172801 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:43172800 original size:40 final size:40
Alignment explanation
Indices: 43172597--43172800 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
43172587 CGGAATTTAA
** *
43172597 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
43172637 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
43172677 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
43172716 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
43172756 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
43172796 CCGGA
1 CCGGA
43172801 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:43185484 original size:67 final size:67
Alignment explanation
Indices: 43185408--43185739 Score: 357
Period size: 67 Copynumber: 5.0 Consensus size: 67
43185398 CAGAGCTCGA
* *
43185408 CTATGGCAACATAGAGAGT-TCGCCAGGACATTAAACATGGGGTATGATGTGTAAGATCATAACT
1 CTATGGCAACATAGAGAGTCT-GCCAGGACATTAAACATGAGGTATGATGTGTAAGATCATAGCT
43185472 TGG
65 TGG
* * * * *
43185475 CTATGGCAACATAGAGAGTCTGCCATGACATTAAACATGAGGCATGATGTGCAAGACCATAGCTC
1 CTATGGCAACATAGAGAGTCTGCCAGGACATTAAACATGAGGTATGATGTGTAAGATCATAGCTT
*
43185540 GA
66 GG
**** ** * * * * * *
43185542 CTACAATAATGTAGTGAATCTACTAGGACATTAAACATGAGGCATGATGTGTAAGATTATAGC-T
1 CTATGGCAACATAGAGAGTCTGCCAGGACATTAAACATGAGGTATGATGTGTAAGATCATAGCTT
43185606 GG
66 GG
** * * * *
43185608 ACTATGATAATATAGAGAGTCCGCTAGGACATTAAACATGAGGTATGATGTGTAAGACCATAGCT
1 -CTATGGCAACATAGAGAGTCTGCCAGGACATTAAACATGAGGTATGATGTGTAAGATCATAGCT
43185673 TGG
65 TGG
*
43185676 CTATGGCAACATAGAGAGTCTGCTCA-GACATTAATCATTG-GGTATGATGTGTAAGATCATAGC
1 CTATGGCAACATAGAGAGTCTGC-CAGGACATTAAACA-TGAGGTATGATGTGTAAGATCATAGC
43185739 T
64 T
43185740 CAGCTATAGC
Statistics
Matches: 219, Mismatches: 41, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
66 1 0.00
67 211 0.96
68 7 0.03
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.26
Consensus pattern (67 bp):
CTATGGCAACATAGAGAGTCTGCCAGGACATTAAACATGAGGTATGATGTGTAAGATCATAGCTT
GG
Found at i:43185706 original size:134 final size:133
Alignment explanation
Indices: 43185376--43185739 Score: 394
Period size: 134 Copynumber: 2.7 Consensus size: 133
43185366 GACAGTTCGC
* * * * *
43185376 CATGGGGTATGATATGTAGGGCCAGAGCTCGACTATGGCAACATAGAGAGT-TCGC-CAGGACAT
1 CATGAGGTATGATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTCT-GCTCAGGACAT
* * * *
43185439 TAAACATGGGGTATGATGTGTAAGATCATAACTTGGCTATGGCAACATAGAGAGTCTGCCATGAC
65 TAAACAT-GGGTATGATGTGTAAGATCATAGC-TGGCTATGACAACATAGAGAGTCCGCCAGGAC
43185504 ATTAAA
128 ATTAAA
* * **** ** * * *
43185510 CATGAGGCATGATGTGCAAGACCATAGCTCGACTACAATAATGTAGTGAATCTACT-AGGACATT
1 CATGAGGTATGATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTCTGCTCAGGACATT
* * * * *
43185574 AAACATGAGGCATGATGTGTAAGATTATAGCTGGACTATGATAATATAGAGAGTCCGCTAGGACA
66 AAACATG-GGTATGATGTGTAAGATCATAGCTGG-CTATGACAACATAGAGAGTCCGCCAGGACA
43185639 TTAAA
129 TTAAA
* *
43185644 CATGAGGTATGATGTGTAAGACCATAGCTTGGCTATGGCAACATAGAGAGTCTGCTCA-GACATT
1 CATGAGGTATGATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTCTGCTCAGGACATT
*
43185708 AATCATTGGGTATGATGTGTAAGATCATAGCT
66 AAACA-TGGGTATGATGTGTAAGATCATAGCT
43185740 CAGCTATAGC
Statistics
Matches: 183, Mismatches: 41, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
133 4 0.02
134 175 0.96
135 4 0.02
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (133 bp):
CATGAGGTATGATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTCTGCTCAGGACATT
AAACATGGGTATGATGTGTAAGATCATAGCTGGCTATGACAACATAGAGAGTCCGCCAGGACATT
AAA
Found at i:43187534 original size:27 final size:27
Alignment explanation
Indices: 43187504--43187681 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
43187494 ATATTGAGTC
* * * *
43187504 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
43187531 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
43187558 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
43187586 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
43187613 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
43187640 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
43187667 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43187682 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:43187643 original size:82 final size:81
Alignment explanation
Indices: 43187525--43187680 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
43187515 TGCTATATAA
* *
43187525 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
43187590 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
43187607 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
43187671 CACTTAGTGC
65 CACTTAGTGC
43187681 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:43195890 original size:28 final size:28
Alignment explanation
Indices: 43195827--43196036 Score: 334
Period size: 28 Copynumber: 7.5 Consensus size: 28
43195817 TTATTAAGTC
*
43195827 CGCACACTCAGTGCTA-AGTAATC-AACT
1 CGCACACTTAGTGCTACA-TAATCAAACT
*
43195854 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
43195882 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
43195910 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
43195938 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
43195966 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
43195994 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
43196022 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43196037 GTACAATTTA
Statistics
Matches: 170, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
27 20 0.12
28 150 0.88
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:43195935 original size:56 final size:56
Alignment explanation
Indices: 43195827--43196036 Score: 370
Period size: 56 Copynumber: 3.8 Consensus size: 56
43195817 TTATTAAGTC
* * *
43195827 CGCACACTCAGTGCTA-AGTAATCAA-CTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACA-TAATCAAGCTCGCACACTTAGTGCTACATAGTCAAACT
43195882 CGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTGCTACATAGTCAAACT
43195938 CGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTGCTACATAGTCAAACT
43195994 CGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTGCT
43196037 GTACAATTTA
Statistics
Matches: 150, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
55 22 0.15
56 128 0.85
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (56 bp):
CGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:43200631 original size:72 final size:72
Alignment explanation
Indices: 43200509--43200651 Score: 180
Period size: 72 Copynumber: 2.0 Consensus size: 72
43200499 CTGATGGCTG
* * * *
43200509 AATATGCCAATAGCATGTTCTTGATATGTTAAACTATAAGTTCAATTAGTATGTTCCGATCTGTT
1 AATATGCCAATAGCATATTCTTGATATGTTAAACTATAAGTGCAACTAGTATGTTCCGATATGTT
43200574 TTATCTA
66 TTATCTA
* * * * * *
43200581 AATATGCCAATCA-CATATTTTTTATCTGTTAAACTATATGTGCAACTAGTATTTTCTGATATGT
1 AATATGCCAAT-AGCATATTCTTGATATGTTAAACTATAAGTGCAACTAGTATGTTCCGATATGT
43200645 TTTATCT
65 TTTATCT
43200652 GCATATGGGC
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
72 59 0.98
73 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (72 bp):
AATATGCCAATAGCATATTCTTGATATGTTAAACTATAAGTGCAACTAGTATGTTCCGATATGTT
TTATCTA
Found at i:43202406 original size:3 final size:3
Alignment explanation
Indices: 43202398--43202429 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
43202388 TTTTTCTCCT
43202398 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
43202430 TAATATTTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:43203705 original size:20 final size:21
Alignment explanation
Indices: 43203680--43203721 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
43203670 ACCTGTAAAC
*
43203680 TTTAGTGTTTAAATT-ATATT
1 TTTAGTGGTTAAATTGATATT
43203700 TTTAGTGGTTAAATTGATATT
1 TTTAGTGGTTAAATTGATATT
43203721 T
1 T
43203722 AAGCTTGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (21 bp):
TTTAGTGGTTAAATTGATATT
Found at i:43206209 original size:18 final size:18
Alignment explanation
Indices: 43206186--43206224 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
43206176 CAATACTTAA
43206186 CTTAGAATTCACCCATTT
1 CTTAGAATTCACCCATTT
43206204 CTTAGAATTCACCCATTT
1 CTTAGAATTCACCCATTT
43206222 CTT
1 CTT
43206225 CGTTACTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.28, G:0.05, T:0.41
Consensus pattern (18 bp):
CTTAGAATTCACCCATTT
Found at i:43206631 original size:28 final size:28
Alignment explanation
Indices: 43206491--43206810 Score: 317
Period size: 28 Copynumber: 11.4 Consensus size: 28
43206481 GTTTGGCACG
*
43206491 AGGCATTCATTTAACAGAGATAGCCACAA
1 AGGC-TTCCTTTAACAGAGATAGCCACAA
* * * *
43206520 AGACATGCTTTTAA-ATGAGGTAGCCACAA
1 AGGC-TTCCTTTAACA-GAGATAGCCACAA
**
43206549 AGGAATCCTTTTAACAGAGATAGCCACAA
1 AGGCTTCC-TTTAACAGAGATAGCCACAA
* * *
43206578 AGACTTCCTTTTAATAGAAATAGCCACAA
1 AGGCTTCC-TTTAACAGAGATAGCCACAA
* *
43206607 AGGCTTCCTTTAATAGAGATCGCCACAA
1 AGGCTTCCTTTAACAGAGATAGCCACAA
*
43206635 AGGCTTCTTTTAACAGAGATCA-CCACAA
1 AGGCTTCCTTTAACAGAGAT-AGCCACAA
* ***
43206663 AGGCTTCCTTTAATAGAGATCTTCACAA
1 AGGCTTCCTTTAACAGAGATAGCCACAA
* *
43206691 AAGCTTCCTTTAACAGAGATCA-CCATAA
1 AGGCTTCCTTTAACAGAGAT-AGCCACAA
* * *
43206719 AGGCTTCCTTTAATAGGGATTGCCACAA
1 AGGCTTCCTTTAACAGAGATAGCCACAA
*
43206747 AGGCTTCCTTTAACAGAGATAGCCACGA
1 AGGCTTCCTTTAACAGAGATAGCCACAA
*
43206775 AGGCATCCTTT--CAGAGATAGCCACAA
1 AGGCTTCCTTTAACAGAGATAGCCACAA
*
43206801 AGGATTCCTT
1 AGGCTTCCTT
43206811 GCAAAAACTA
Statistics
Matches: 241, Mismatches: 43, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
26 22 0.09
28 145 0.60
29 73 0.30
30 1 0.00
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.25
Consensus pattern (28 bp):
AGGCTTCCTTTAACAGAGATAGCCACAA
Found at i:43222361 original size:39 final size:39
Alignment explanation
Indices: 43222276--43222364 Score: 103
Period size: 38 Copynumber: 2.3 Consensus size: 39
43222266 GTACTGATTA
*
43222276 CTGATACTGTAATGGGCTAAGGCCTAATGCATGACTGCAC
1 CTGATACTG-AATGGGCTAAGGCCTAATGCATAACTGCAC
* *
43222316 CT-ATACTGAATGGGCTAAGGCCATAACTG-A-AACTGGAT
1 CTGATACTGAATGGGCTAAGGCC-TAA-TGCATAACTGCAC
43222354 CTGATACTGAA
1 CTGATACTGAA
43222365 AAAGGGCTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
38 21 0.49
39 18 0.42
40 4 0.09
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (39 bp):
CTGATACTGAATGGGCTAAGGCCTAATGCATAACTGCAC
Found at i:43225126 original size:39 final size:39
Alignment explanation
Indices: 43225041--43225129 Score: 103
Period size: 38 Copynumber: 2.3 Consensus size: 39
43225031 GTACTGATTA
*
43225041 CTGATACTGTAATGGGCTAAGGCCTAATGCATGACTGCAC
1 CTGATACTG-AATGGGCTAAGGCCTAATGCATAACTGCAC
* *
43225081 CT-ATACTGAATGGGCTAAGGCCATAACTG-A-AACTGGAT
1 CTGATACTGAATGGGCTAAGGCC-TAA-TGCATAACTGCAC
43225119 CTGATACTGAA
1 CTGATACTGAA
43225130 AAAGGGCTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
38 21 0.49
39 18 0.42
40 4 0.09
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (39 bp):
CTGATACTGAATGGGCTAAGGCCTAATGCATAACTGCAC
Found at i:43228023 original size:27 final size:27
Alignment explanation
Indices: 43227985--43228037 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
43227975 TCTTCAGTCC
*
43227985 ACTTGAAAGGTGCACTTTTCCTCAAAA
1 ACTTGAAAGGTGCACTTTTCCACAAAA
43228012 ACTTGAAAGGTGCACTTTTCCACAAA
1 ACTTGAAAGGTGCACTTTTCCACAAA
43228038 CCTCTTATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (27 bp):
ACTTGAAAGGTGCACTTTTCCACAAAA
Found at i:43229512 original size:20 final size:21
Alignment explanation
Indices: 43229475--43229515 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
43229465 AACTAGTATT
*
43229475 CTGCATCAGTGAGGGTTGTCC
1 CTGCAACAGTGAGGGTTGTCC
43229496 CTGCAACAGTG-GGGTTGTCC
1 CTGCAACAGTGAGGGTTGTCC
43229516 TAGAAACACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.15, C:0.24, G:0.34, T:0.27
Consensus pattern (21 bp):
CTGCAACAGTGAGGGTTGTCC
Found at i:43229523 original size:20 final size:21
Alignment explanation
Indices: 43229481--43229523 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
43229471 TATTCTGCAT
*
43229481 CAGTGAGGGTTGTCCCTGCAA
1 CAGTGAGGGTTGTCCCTGAAA
43229502 CAGTG-GGGTTGT-CCTAGAAA
1 CAGTGAGGGTTGTCCCT-GAAA
43229522 CA
1 CA
43229524 CCATTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 3 0.15
20 12 0.60
21 5 0.25
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.23
Consensus pattern (21 bp):
CAGTGAGGGTTGTCCCTGAAA
Found at i:43229961 original size:16 final size:16
Alignment explanation
Indices: 43229930--43229982 Score: 65
Period size: 15 Copynumber: 3.4 Consensus size: 16
43229920 AGTCTTGTCA
43229930 CTATAGTTTT-AGAAT
1 CTATAGTTTTCAGAAT
43229945 CTATAGTTTTCAGAAT
1 CTATAGTTTTCAGAAT
* * *
43229961 CTAGAG-TTTCACAGT
1 CTATAGTTTTCAGAAT
43229976 CTATAGT
1 CTATAGT
43229983 ATTCTATAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
15 22 0.69
16 10 0.31
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.42
Consensus pattern (16 bp):
CTATAGTTTTCAGAAT
Found at i:43230143 original size:18 final size:19
Alignment explanation
Indices: 43230122--43230161 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
43230112 ATGGCATGGA
43230122 TTTTTCACAAA-ATACATT
1 TTTTTCACAAATATACATT
* *
43230140 TTTTTCTCAAATATGCATT
1 TTTTTCACAAATATACATT
43230159 TTT
1 TTT
43230162 GAAAATAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.53
Consensus pattern (19 bp):
TTTTTCACAAATATACATT
Found at i:43235877 original size:40 final size:40
Alignment explanation
Indices: 43235833--43236094 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
43235823 GCTCCTCGTT
* *
43235833 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
43235873 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
43235913 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
43235952 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
43235991 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
43236030 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
43236071 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
43236095 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:43247808 original size:18 final size:19
Alignment explanation
Indices: 43247782--43247818 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
43247772 AATTTTGGAA
43247782 TGGAAAGAAGAGA-GAAAG
1 TGGAAAGAAGAGAGGAAAG
*
43247800 TGGAGAGAAGAGAGGAAAG
1 TGGAAAGAAGAGAGGAAAG
43247819 ATGTGATTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.43, T:0.05
Consensus pattern (19 bp):
TGGAAAGAAGAGAGGAAAG
Found at i:43248749 original size:22 final size:22
Alignment explanation
Indices: 43248690--43248751 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 22
43248680 TAGTTTAATG
43248690 TGGTGAT-GTTACGGTGGTTGAA
1 TGGTGATGGTT-CGGTGGTTGAA
* * * *
43248712 TAGTGGTGGAGT-GGTGGTTGTA
1 TGGTGATGG-TTCGGTGGTTGAA
43248734 TGGTGATGGTTCGGTGGT
1 TGGTGATGGTTCGGTGGT
43248752 GATTTGGTGG
Statistics
Matches: 30, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
21 1 0.03
22 27 0.90
23 1 0.03
24 1 0.03
ACGTcount: A:0.13, C:0.03, G:0.47, T:0.37
Consensus pattern (22 bp):
TGGTGATGGTTCGGTGGTTGAA
Found at i:43250423 original size:35 final size:35
Alignment explanation
Indices: 43250376--43250472 Score: 113
Period size: 35 Copynumber: 2.8 Consensus size: 35
43250366 TTTATCACAG
* *
43250376 TGGCATGTTTAACATGTGAATTAGAATCAGAATAA
1 TGGCATGCTTAACATGCGAATTAGAATCAGAATAA
* * * *
43250411 TGGCATGCTTAACATACGAATCATAATCAGAATGA
1 TGGCATGCTTAACATGCGAATTAGAATCAGAATAA
* * *
43250446 TAGCATGCTCAACATGCAAATTAGAAT
1 TGGCATGCTTAACATGCGAATTAGAAT
43250473 ATCAATAAAT
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (35 bp):
TGGCATGCTTAACATGCGAATTAGAATCAGAATAA
Found at i:43254567 original size:31 final size:32
Alignment explanation
Indices: 43254511--43254577 Score: 77
Period size: 31 Copynumber: 2.1 Consensus size: 32
43254501 TTATTTATAT
*
43254511 AGGTTGGCCGAATGTGTGGGATCA-TTTAACA
1 AGGTTAGCCGAATGTGTGGGATCATTTTAACA
*
43254542 AGGTTAGCCGAAT-T-TGGAGATTCATTTTAGCA
1 AGGTTAGCCGAATGTGTGG-GA-TCATTTTAACA
43254574 AGGT
1 AGGT
43254578 GTATGCATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 3 0.10
30 3 0.10
31 15 0.48
32 10 0.32
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.31
Consensus pattern (32 bp):
AGGTTAGCCGAATGTGTGGGATCATTTTAACA
Found at i:43268593 original size:22 final size:22
Alignment explanation
Indices: 43268562--43268605 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
43268552 TTTTGAACCA
*
43268562 TTACCTTTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
43268584 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
43268606 AAATACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.23, C:0.36, G:0.05, T:0.36
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:43269440 original size:16 final size:17
Alignment explanation
Indices: 43269414--43269447 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
43269404 TTAGATTGGG
*
43269414 TTGATAAAATTATTTAA
1 TTGATAAAATTAATTAA
43269431 TTGA-AAAATTAATTAA
1 TTGATAAAATTAATTAA
43269447 T
1 T
43269448 ATAAGTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
TTGATAAAATTAATTAA
Found at i:43271148 original size:37 final size:37
Alignment explanation
Indices: 43271111--43271179 Score: 99
Period size: 35 Copynumber: 1.9 Consensus size: 37
43271101 ATGCTAATTT
* *
43271111 TTTTA-TGAATTTTTTTAT-ATT-TTGAGTTATTTTA
1 TTTTATTGAATATTTTTATAATTATTGAATTATTTTA
43271145 TTTTATTGAATATTTTTATAATTATTGAATTATTT
1 TTTTATTGAATATTTTTATAATTATTGAATTATTT
43271180 GTTGACGTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
34 5 0.17
35 12 0.40
36 3 0.10
37 10 0.33
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (37 bp):
TTTTATTGAATATTTTTATAATTATTGAATTATTTTA
Found at i:43271546 original size:19 final size:19
Alignment explanation
Indices: 43271525--43271560 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
43271515 TAAAAAAATA
43271525 AAAAATTATT-AATTTTAG
1 AAAAATTATTAAATTTTAG
43271543 AAAAATTATTAAATTTTA
1 AAAAATTATTAAATTTTA
43271561 ATAAAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (19 bp):
AAAAATTATTAAATTTTAG
Found at i:43271625 original size:13 final size:13
Alignment explanation
Indices: 43271609--43271634 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
43271599 AATTTTTTAT
43271609 AAAAATTGTAAAA
1 AAAAATTGTAAAA
43271622 AAAAATTGTAAAA
1 AAAAATTGTAAAA
43271635 TTTTATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (13 bp):
AAAAATTGTAAAA
Found at i:43271878 original size:10 final size:10
Alignment explanation
Indices: 43271865--43271973 Score: 61
Period size: 10 Copynumber: 11.4 Consensus size: 10
43271855 AAATTTCATA
*
43271865 ATTTTTTTAT
1 ATTTTTATAT
*
43271875 ATTTCTATAT
1 ATTTTTATAT
43271885 A-TTTTATA-
1 ATTTTTATAT
*
43271893 ATTTTT-TACG
1 ATTTTTATA-T
*
43271903 ATTTTTATAA
1 ATTTTTATAT
* *
43271913 AATTTTACA-
1 ATTTTTATAT
43271922 ATTTTT-TAT
1 ATTTTTATAT
* *
43271931 ATTTTTTTACA
1 ATTTTTATA-T
43271942 ATTTTTATAT
1 ATTTTTATAT
* *
43271952 TTTTTTCTA-
1 ATTTTTATAT
43271961 ATTTTTA-AT
1 ATTTTTATAT
43271970 ATTT
1 ATTT
43271974 GAAATTTTTA
Statistics
Matches: 76, Mismatches: 15, Indels: 17
0.70 0.14 0.16
Matches are distributed among these distances:
8 5 0.07
9 30 0.39
10 31 0.41
11 10 0.13
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.66
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:43271897 original size:28 final size:28
Alignment explanation
Indices: 43271851--43271957 Score: 99
Period size: 29 Copynumber: 3.8 Consensus size: 28
43271841 CTAACGAATT
*
43271851 TATAAAATTTCATAATTTTTTTATATTTC
1 TATAAAATTTTATAA-TTTTTTATATTTC
* * *
43271880 TAT-ATATTTTATAATTTTTTACGATTTT
1 TATAAAATTTTATAATTTTTTA-TATTTC
* *
43271908 TATAAAATTTTACAATTTTTTATATTTT
1 TATAAAATTTTATAATTTTTTATATTTC
* * *
43271936 TTTACAATTTTTATATTTTTTT
1 TATA-AAATTTTATAATTTTTT
43271958 CTAATTTTTA
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
27 7 0.11
28 24 0.38
29 33 0.52
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.64
Consensus pattern (28 bp):
TATAAAATTTTATAATTTTTTATATTTC
Found at i:43271912 original size:57 final size:58
Alignment explanation
Indices: 43271814--43271961 Score: 149
Period size: 57 Copynumber: 2.5 Consensus size: 58
43271804 ATTTTACGAA
* *
43271814 ATATTTCTTTACATTTTATATAATTTTCTAACGAATTTATAAAATTTCATAATTTTTTT
1 ATATTTCTATACATTTTATATAATTTTCTAACGAATTTATAAAATTTCACAA-TTTTTT
* * * *
43271873 ATATTTCTATATA-TTT-TATAATTTT-TTACGATTTTTATAAAATTTTACAATTTTTT
1 ATATTTCTATACATTTTATATAATTTTCTAACGA-ATTTATAAAATTTCACAATTTTTT
* * **
43271929 ATATTTTTTTACAATTTTTATATTTTTTTCTAA
1 ATATTTCTATAC-A-TTTTATATAATTTTCTAA
43271962 TTTTTAATAT
Statistics
Matches: 71, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
56 20 0.28
57 25 0.35
58 3 0.04
59 14 0.20
60 7 0.10
61 2 0.03
ACGTcount: A:0.32, C:0.07, G:0.01, T:0.60
Consensus pattern (58 bp):
ATATTTCTATACATTTTATATAATTTTCTAACGAATTTATAAAATTTCACAATTTTTT
Found at i:43271964 original size:39 final size:40
Alignment explanation
Indices: 43271876--43271973 Score: 110
Period size: 39 Copynumber: 2.5 Consensus size: 40
43271866 TTTTTTTATA
* * *
43271876 TTTCTATATATTTTATAATTTTTTACGATTTTTATAAAATT
1 TTTCTA-ATTTTTTATATTTTTTTACAATTTTTATAAAATT
* **
43271917 TTAC-AATTTTTTATATTTTTTTACAATTTTTAT-ATTTT
1 TTTCTAATTTTTTATATTTTTTTACAATTTTTATAAAATT
*
43271955 TTTCTAATTTTTAATATTT
1 TTTCTAATTTTTTATATTT
43271974 GAAATTTTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
38 6 0.12
39 38 0.79
40 1 0.02
41 3 0.06
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.65
Consensus pattern (40 bp):
TTTCTAATTTTTTATATTTTTTTACAATTTTTATAAAATT
Found at i:43271971 original size:20 final size:19
Alignment explanation
Indices: 43271886--43271973 Score: 97
Period size: 19 Copynumber: 4.5 Consensus size: 19
43271876 TTTCTATATA
* *
43271886 TTTTATAATTTTTTACGAT
1 TTTTATATTTTTTTACAAT
***
43271905 TTTTATAAAATTTTACAATT
1 TTTTATATTTTTTTACAA-T
43271925 TTTTATATTTTTTTACAAT
1 TTTTATATTTTTTTACAAT
43271944 TTTTATATTTTTTT-CTAAT
1 TTTTATATTTTTTTAC-AAT
43271963 TTTTAATATTT
1 TTTT-ATATTT
43271974 GAAATTTTTA
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
18 1 0.02
19 37 0.62
20 22 0.37
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.66
Consensus pattern (19 bp):
TTTTATATTTTTTTACAAT
Found at i:43272041 original size:20 final size:20
Alignment explanation
Indices: 43272016--43272055 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
43272006 AATTTTATTG
*
43272016 ATTCTAATTTTTTATAAAAA
1 ATTCTAATTTTTAATAAAAA
43272036 ATTCTAATTTTTAATAAAAA
1 ATTCTAATTTTTAATAAAAA
43272056 CAAGGGCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTCTAATTTTTAATAAAAA
Found at i:43272178 original size:89 final size:87
Alignment explanation
Indices: 43272058--43272260 Score: 241
Period size: 89 Copynumber: 2.3 Consensus size: 87
43272048 AATAAAAACA
* * *
43272058 AGGG-CTTAATTGCTTTTTTTGTAAAAAGTTTGAAGGTCTTGTTGATGCGTTTTGAAAGTTCAAG
1 AGGGACTTAATTGCTTTTTTT-T-AAAAGTTTGAAGGCCTTGTTGATGCATTTTGAAAATTCAAG
43272122 TAAC-CAATGGAGTACAAAAAAAAAG
64 T-ACTCAATGGAGTAC-AAAAAAAAG
* * * *
43272147 TAGGGGA-TTAATTGCTTTTTTTTAAAGGTTTGAGGGCCTTTTTGATGCATTTTGAAAATTTAAG
1 -A-GGGACTTAATTGCTTTTTTTTAAAAGTTTGAAGGCCTTGTTGATGCATTTTGAAAATTCAAG
* * *
43272211 TGCTCAATTGAGTGCAAAAAAAAG
64 TACTCAATGGAGTACAAAAAAAAG
43272235 AGGGACTTAATTGCTTTTTTTTAAAA
1 AGGGACTTAATTGCTTTTTTTTAAAA
43272261 AAAATTGAGG
Statistics
Matches: 98, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
86 4 0.04
87 20 0.20
88 10 0.10
89 44 0.45
90 2 0.02
91 18 0.18
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (87 bp):
AGGGACTTAATTGCTTTTTTTTAAAAGTTTGAAGGCCTTGTTGATGCATTTTGAAAATTCAAGTA
CTCAATGGAGTACAAAAAAAAG
Found at i:43273668 original size:32 final size:33
Alignment explanation
Indices: 43273586--43273669 Score: 82
Period size: 32 Copynumber: 2.6 Consensus size: 33
43273576 ATTAAATAAA
43273586 AAATAATATAAATTTTTT-ATAAAAATGTTTTAT
1 AAATAATAT-AATTTTTTCATAAAAATGTTTTAT
** * ** * *
43273619 AAATTGTCTAAAATTTTCATAATACT-TTTTAT
1 AAATAATATAATTTTTTCATAAAAATGTTTTAT
43273651 AAATAATATAATTTTTTCA
1 AAATAATATAATTTTTTCA
43273670 ATAACTTTAG
Statistics
Matches: 38, Mismatches: 12, Indels: 3
0.72 0.23 0.06
Matches are distributed among these distances:
32 26 0.68
33 12 0.32
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (33 bp):
AAATAATATAATTTTTTCATAAAAATGTTTTAT
Found at i:43276851 original size:22 final size:22
Alignment explanation
Indices: 43276795--43276838 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
43276785 CTTTTGTTCG
** *
43276795 ATTAAATAAAATTTTATTTTTA
1 ATTAAATTCAATTTTAATTTTA
43276817 ATTAAATTCAATTTTAATTTTA
1 ATTAAATTCAATTTTAATTTTA
43276839 TATAATTTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTAAATTCAATTTTAATTTTA
Found at i:43278641 original size:22 final size:22
Alignment explanation
Indices: 43278614--43278657 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
43278604 TTAGGTTTAT
43278614 CTGACAAAACAGATAATTGGAC
1 CTGACAAAACAGATAATTGGAC
*
43278636 CTGACAAAACAGATGATTGGAC
1 CTGACAAAACAGATAATTGGAC
43278658 ACTATGTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.18
Consensus pattern (22 bp):
CTGACAAAACAGATAATTGGAC
Found at i:43280119 original size:23 final size:22
Alignment explanation
Indices: 43280060--43280119 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 22
43280050 TGGATCTAAC
43280060 CTAAAAGAAGAAATACAAAAAA
1 CTAAAAGAAGAAATACAAAAAA
* ** * *
43280082 TTAGAATTAAAAAATACGAAAACA
1 CTA-AAAGAAGAAATAC-AAAAAA
43280106 CTAAAAGAAGAAAT
1 CTAAAAGAAGAAAT
43280120 TTAATAGCTA
Statistics
Matches: 27, Mismatches: 9, Indels: 3
0.69 0.23 0.08
Matches are distributed among these distances:
22 2 0.07
23 18 0.67
24 7 0.26
ACGTcount: A:0.67, C:0.08, G:0.10, T:0.15
Consensus pattern (22 bp):
CTAAAAGAAGAAATACAAAAAA
Found at i:43282108 original size:96 final size:96
Alignment explanation
Indices: 43281917--43282100 Score: 296
Period size: 96 Copynumber: 1.9 Consensus size: 96
43281907 TAACAATTTC
*
43281917 CTTGCAGCTTCACGAGTTTGCAGACTCCTATCAACAACAGCCACCGAAGAAACCCCAGCAAGATA
1 CTTGCAGCTTCACGAGCTTGCAGACTCCTATCAACAACAGCCACCGAAGAAACCCCAGCAAGATA
* *
43281982 TGGCAGGTGTGAAGGTGGAGGCTACCCATAA
66 TGGCAGGTGCGAAGGAGGAGGCTACCCATAA
* * * *
43282013 CTTGCAGCTTCACGGGCTTGCAGACTTCTATCAACAACAGCTACCGAGGAAACCCCAGCAAGATA
1 CTTGCAGCTTCACGAGCTTGCAGACTCCTATCAACAACAGCCACCGAAGAAACCCCAGCAAGATA
*
43282078 TGGCAGGTGCGCAGGAGGAGGCT
66 TGGCAGGTGCGAAGGAGGAGGCT
43282101 GTCCATAAAG
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 80 1.00
ACGTcount: A:0.29, C:0.27, G:0.26, T:0.17
Consensus pattern (96 bp):
CTTGCAGCTTCACGAGCTTGCAGACTCCTATCAACAACAGCCACCGAAGAAACCCCAGCAAGATA
TGGCAGGTGCGAAGGAGGAGGCTACCCATAA
Found at i:43287194 original size:16 final size:16
Alignment explanation
Indices: 43287170--43287202 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
43287160 CACCAGCGCC
*
43287170 TTTTTTTTTAATTTTA
1 TTTTATTTTAATTTTA
43287186 TTTTATTTTAATTTTA
1 TTTTATTTTAATTTTA
43287202 T
1 T
43287203 GAAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTATTTTAATTTTA
Found at i:43287490 original size:3 final size:3
Alignment explanation
Indices: 43287482--43287508 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
43287472 TGTTTAAACT
43287482 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
43287509 TCTCATGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:43288019 original size:13 final size:13
Alignment explanation
Indices: 43288001--43288029 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
43287991 CTAAAGTAAC
43288001 AATTAAACCATTT
1 AATTAAACCATTT
43288014 AATTAAACCATTT
1 AATTAAACCATTT
43288027 AAT
1 AAT
43288030 AAATGGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (13 bp):
AATTAAACCATTT
Found at i:43288502 original size:49 final size:49
Alignment explanation
Indices: 43288449--43288592 Score: 121
Period size: 49 Copynumber: 3.1 Consensus size: 49
43288439 ACACTAAGGA
43288449 CTAAATTGTGAAAATTTTGAAATTACGGGTCAAATTGGAAAAGAGGAAG
1 CTAAATTGTGAAAATTTTGAAATTACGGGTCAAATTGGAAAAGAGGAAG
** * * * * *
43288498 CTAAATGTGGTTTAGA--GTGAAATTA---GT---A-T-AAAAATATGAAG
1 CTAAAT-T-GTGAAAATTTTGAAATTACGGGTCAAATTGGAAAAGAGGAAG
*
43288539 -TTAATTGTGAAAATTTTGAAATTACGGGTCAAATTGGAAAAGAGGAAG
1 CTAAATTGTGAAAATTTTGAAATTACGGGTCAAATTGGAAAAGAGGAAG
43288587 CTAAAT
1 CTAAAT
43288593 GTGGTTTAGA
Statistics
Matches: 66, Mismatches: 16, Indels: 26
0.61 0.15 0.24
Matches are distributed among these distances:
38 4 0.06
39 1 0.02
40 12 0.18
41 9 0.14
42 1 0.02
43 3 0.05
46 3 0.05
47 1 0.02
48 9 0.14
49 18 0.27
50 1 0.02
51 4 0.06
ACGTcount: A:0.43, C:0.05, G:0.23, T:0.29
Consensus pattern (49 bp):
CTAAATTGTGAAAATTTTGAAATTACGGGTCAAATTGGAAAAGAGGAAG
Found at i:43288554 original size:89 final size:89
Alignment explanation
Indices: 43288452--43288644 Score: 386
Period size: 89 Copynumber: 2.2 Consensus size: 89
43288442 CTAAGGACTA
43288452 AATTGTGAAAATTTTGAAATTACGGGTCAAATTGGAAAAGAGGAAGCTAAATGTGGTTTAGAGTG
1 AATTGTGAAAATTTTGAAATTACGGGTCAAATTGGAAAAGAGGAAGCTAAATGTGGTTTAGAGTG
43288517 AAATTAGTATAAAAATATGAAGTT
66 AAATTAGTATAAAAATATGAAGTT
43288541 AATTGTGAAAATTTTGAAATTACGGGTCAAATTGGAAAAGAGGAAGCTAAATGTGGTTTAGAGTG
1 AATTGTGAAAATTTTGAAATTACGGGTCAAATTGGAAAAGAGGAAGCTAAATGTGGTTTAGAGTG
43288606 AAATTAGTATAAAAATATGAAGTT
66 AAATTAGTATAAAAATATGAAGTT
43288630 AATTGTGAAAATTTT
1 AATTGTGAAAATTTT
43288645 AATTAGTCTC
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 104 1.00
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (89 bp):
AATTGTGAAAATTTTGAAATTACGGGTCAAATTGGAAAAGAGGAAGCTAAATGTGGTTTAGAGTG
AAATTAGTATAAAAATATGAAGTT
Found at i:43290282 original size:19 final size:19
Alignment explanation
Indices: 43290255--43290295 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
43290245 ACAGCCTAGC
*
43290255 CACACGGGCGTGTGCCACA
1 CACACGGGCATGTGCCACA
* *
43290274 CACATGGGCATGTGTCACA
1 CACACGGGCATGTGCCACA
43290293 CAC
1 CAC
43290296 GGGCAACACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.24, C:0.34, G:0.27, T:0.15
Consensus pattern (19 bp):
CACACGGGCATGTGCCACA
Found at i:43292286 original size:33 final size:33
Alignment explanation
Indices: 43292249--43292357 Score: 175
Period size: 33 Copynumber: 3.3 Consensus size: 33
43292239 CAATCCATCT
43292249 ATCACACCAATGCTCATAAGAGCTAAACCAACC
1 ATCACACCAATGCTCATAAGAGCTAAACCAACC
*
43292282 ATCACACCAATGCTTATAAGAG-TCAAACCAACC
1 ATCACACCAATGCTCATAAGAGCT-AAACCAACC
*
43292315 ATCACACCAATGCTCATAAGAGCTAATCCAACC
1 ATCACACCAATGCTCATAAGAGCTAAACCAACC
*
43292348 AGCACACCAA
1 ATCACACCAA
43292358 ATAAAGAGTA
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
32 1 0.01
33 68 0.97
34 1 0.01
ACGTcount: A:0.42, C:0.33, G:0.09, T:0.16
Consensus pattern (33 bp):
ATCACACCAATGCTCATAAGAGCTAAACCAACC
Found at i:43298295 original size:114 final size:114
Alignment explanation
Indices: 43298156--43298388 Score: 403
Period size: 114 Copynumber: 2.0 Consensus size: 114
43298146 CTTTCTGTAC
* * * *
43298156 TATTTTCTACGGTGTAATCGAGATCGAAGTAGTTCTAGCAGTTACTTCAATAACAATTTCAACTT
1 TATTTTCTACGGTGTAATCAAGATCGAAGCAGTTCCAACAGTTACTTCAATAACAATTTCAACTT
43298221 TTCTCACCGTGACGGTAAACCTCGCAATCCTTTAGGAAATACATCAGTG
66 TTCTCACCGTGACGGTAAACCTCGCAATCCTTTAGGAAATACATCAGTG
*
43298270 TATTTTCTACGGTGTAATCAAGATCGAAGCAGTTCCAACTGTTACTTCAATAACAATTTCAACTT
1 TATTTTCTACGGTGTAATCAAGATCGAAGCAGTTCCAACAGTTACTTCAATAACAATTTCAACTT
* *
43298335 TTCTCACCTTGACGGTAAACCTCGCAATCCTTTAGGAAATACATTAGTG
66 TTCTCACCGTGACGGTAAACCTCGCAATCCTTTAGGAAATACATCAGTG
43298384 TATTT
1 TATTT
43298389 AGAACTGTCA
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
114 112 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (114 bp):
TATTTTCTACGGTGTAATCAAGATCGAAGCAGTTCCAACAGTTACTTCAATAACAATTTCAACTT
TTCTCACCGTGACGGTAAACCTCGCAATCCTTTAGGAAATACATCAGTG
Found at i:43299365 original size:24 final size:27
Alignment explanation
Indices: 43299327--43299375 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
43299317 TTATTCCTCA
43299327 ATTACAAATTTTACCA-ATTAGGGTCG
1 ATTACAAATTTTACCAGATTAGGGTCG
*
43299353 ATTA-AAA-TTTACCAGATTTGGGT
1 ATTACAAATTTTACCAGATTAGGGT
43299376 TTTGAGGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 7 0.33
25 10 0.48
26 4 0.19
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (27 bp):
ATTACAAATTTTACCAGATTAGGGTCG
Found at i:43303527 original size:22 final size:22
Alignment explanation
Indices: 43303497--43303552 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 22
43303487 CTGTGGTGTA
43303497 GTGGAAAGGTGGCGACACAGGT
1 GTGGAAAGGTGGCGACACAGGT
*
43303519 GTGGCAAGGAGGTGGCGTCACAGGT
1 GTGG-AA--AGGTGGCGACACAGGT
*
43303544 GTGGTAAGG
1 GTGGAAAGG
43303553 AGGTCAGAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
22 7 0.24
23 2 0.07
24 1 0.03
25 19 0.66
ACGTcount: A:0.23, C:0.12, G:0.48, T:0.16
Consensus pattern (22 bp):
GTGGAAAGGTGGCGACACAGGT
Found at i:43303531 original size:25 final size:25
Alignment explanation
Indices: 43303503--43303556 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
43303493 TGTAGTGGAA
43303503 AGGTGGCGACACAGGTGTGGCAAGG
1 AGGTGGCGACACAGGTGTGGCAAGG
* *
43303528 AGGTGGCGTCACAGGTGTGGTAAGG
1 AGGTGGCGACACAGGTGTGGCAAGG
43303553 AGGT
1 AGGT
43303557 CAGAGGTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.22, C:0.13, G:0.48, T:0.17
Consensus pattern (25 bp):
AGGTGGCGACACAGGTGTGGCAAGG
Found at i:43305092 original size:27 final size:26
Alignment explanation
Indices: 43305053--43305191 Score: 172
Period size: 27 Copynumber: 5.2 Consensus size: 26
43305043 AAAGGATGTT
* *
43305053 AAATTATTGAAATACCCTTGATTGGTA
1 AAATTA-TGAAATACCCTCGATGGGTA
*
43305080 AAATTACTAAAATA-CCTCGATGGGTA
1 AAATTA-TGAAATACCCTCGATGGGTA
*
43305106 AAATTATCGAAATACCCTCAATGGGTA
1 AAATTAT-GAAATACCCTCGATGGGTA
*
43305133 AAATTATCGAAATACCCCCGATGGGTA
1 AAATTAT-GAAATACCCTCGATGGGTA
*
43305160 AAATTATTGAAATACCCCCGATGGGTA
1 AAATTA-TGAAATACCCTCGATGGGTA
43305187 AAATT
1 AAATT
43305192 GACTGTTATG
Statistics
Matches: 101, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
25 1 0.01
26 21 0.21
27 78 0.77
28 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.28
Consensus pattern (26 bp):
AAATTATGAAATACCCTCGATGGGTA
Found at i:43305133 original size:53 final size:54
Alignment explanation
Indices: 43305053--43305191 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
43305043 AAAGGATGTT
* * *
43305053 AAATTATTGAAATACCCTTGATTGGTAAAATTA-CTAAAATA-CCTCGATGGGTA
1 AAATTATTGAAATACCCTCGATGGGTAAAATTATC-AAAATACCCCCGATGGGTA
* * *
43305106 AAATTATCGAAATACCCTCAATGGGTAAAATTATCGAAATACCCCCGATGGGTA
1 AAATTATTGAAATACCCTCGATGGGTAAAATTATCAAAATACCCCCGATGGGTA
*
43305160 AAATTATTGAAATACCCCCGATGGGTAAAATT
1 AAATTATTGAAATACCCTCGATGGGTAAAATT
43305192 GACTGTTATG
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
53 34 0.45
54 41 0.55
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.28
Consensus pattern (54 bp):
AAATTATTGAAATACCCTCGATGGGTAAAATTATCAAAATACCCCCGATGGGTA
Found at i:43309617 original size:17 final size:18
Alignment explanation
Indices: 43309585--43309618 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
43309575 GATGTGCCCA
*
43309585 AAACTATTTTTTTGCTTG
1 AAACTATTTTTATGCTTG
43309603 AAACTA-TTTTATGCTT
1 AAACTATTTTTATGCTT
43309619 ACTATTATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.26, C:0.12, G:0.09, T:0.53
Consensus pattern (18 bp):
AAACTATTTTTATGCTTG
Found at i:43318460 original size:27 final size:27
Alignment explanation
Indices: 43318429--43318636 Score: 237
Period size: 27 Copynumber: 7.7 Consensus size: 27
43318419 TCCATCTCCT
**
43318429 AGGGGTATAACAGTCATTTTACCCTAT-
1 AGGGGTATTTCAGTCATTTTACCCT-TC
*
43318456 GGGGGTATTTCAGTCATTTTACCCTTC
1 AGGGGTATTTCAGTCATTTTACCCTTC
43318483 AGGGGTATTTCAGTCATTTTACCCTTC
1 AGGGGTATTTCAGTCATTTTACCCTTC
* *
43318510 -GAGGGTATTTTAGTCATTTTATCCTTC
1 AG-GGGTATTTCAGTCATTTTACCCTTC
*
43318537 AGGGGTATTTTAGTCATTTTACCCTTC
1 AGGGGTATTTCAGTCATTTTACCCTTC
* *
43318564 AAGGGTATTTC-GATCATTTTATCCTTC
1 AGGGGTATTTCAG-TCATTTTACCCTTC
**
43318591 AGGATTATTTC-GATCATTTTACCCTTC
1 AGGGGTATTTCAG-TCATTTTACCCTTC
*
43318618 -GAGGGTATTTCTGTCATTT
1 AG-GGGTATTTCAGTCATTT
43318637 GCCCATGAAT
Statistics
Matches: 159, Mismatches: 16, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
26 4 0.03
27 153 0.96
28 2 0.01
ACGTcount: A:0.20, C:0.19, G:0.18, T:0.43
Consensus pattern (27 bp):
AGGGGTATTTCAGTCATTTTACCCTTC
Found at i:43318497 original size:54 final size:54
Alignment explanation
Indices: 43318429--43318636 Score: 278
Period size: 54 Copynumber: 3.9 Consensus size: 54
43318419 TCCATCTCCT
** * *
43318429 AGGGGTATAACAGTCATTTTACCCTAT-GGGGGTATTTCAGTCATTTTACCCTTC
1 AGGGGTATTTCAGTCATTTTACCCT-TCGAGGGTATTTCAGTCATTTTATCCTTC
*
43318483 AGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTTAGTCATTTTATCCTTC
1 AGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTATCCTTC
* *
43318537 AGGGGTATTTTAGTCATTTTACCCTTCAAGGGTATTTC-GATCATTTTATCCTTC
1 AGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCAG-TCATTTTATCCTTC
** *
43318591 AGGATTATTTC-GATCATTTTACCCTTCGAGGGTATTTCTGTCATTT
1 AGGGGTATTTCAG-TCATTTTACCCTTCGAGGGTATTTCAGTCATTT
43318637 GCCCATGAAT
Statistics
Matches: 138, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
53 3 0.02
54 134 0.97
55 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.18, T:0.43
Consensus pattern (54 bp):
AGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTATCCTTC
Found at i:43325453 original size:27 final size:27
Alignment explanation
Indices: 43325432--43325632 Score: 226
Period size: 27 Copynumber: 7.5 Consensus size: 27
43325422 AGGGGTATAA
* *
43325432 CAGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTTTGAGGGTATTT
* * **
43325459 CGGTTATTTTACCCTTCAAGGGTATTT
1 CAGTCATTTTACCCTTTGAGGGTATTT
*
43325486 CAGTCATTTTATCCTTTGAGGGTATTT
1 CAGTCATTTTACCCTTTGAGGGTATTT
** *
43325513 TGGTCATTTTA-CCTTTTAGGGTATTT
1 CAGTCATTTTACCCTTTGAGGGTATTT
43325539 CAGTCATTTTACCCTTTGAGGGTATTT
1 CAGTCATTTTACCCTTTGAGGGTATTT
** * * *
43325566 TGGTTATTTTACCCTTCGGGGGTATTT
1 CAGTCATTTTACCCTTTGAGGGTATTT
**
43325593 CAGTCATTTTACCCTTCAAGGGTATTT
1 CAGTCATTTTACCCTTTGAGGGTATTT
*
43325620 CGGTCA-TTTACCC
1 CAGTCATTTTACCC
43325633 ACGAATCGCA
Statistics
Matches: 145, Mismatches: 28, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
26 30 0.21
27 115 0.79
ACGTcount: A:0.17, C:0.18, G:0.19, T:0.45
Consensus pattern (27 bp):
CAGTCATTTTACCCTTTGAGGGTATTT
Found at i:43325509 original size:54 final size:54
Alignment explanation
Indices: 43325432--43325632 Score: 271
Period size: 54 Copynumber: 3.8 Consensus size: 54
43325422 AGGGGTATAA
* * *
43325432 CAGTCATTTTACCCTATGGGGGTATTTCGGTTATTTTACCCTTCAAGGGTATTT
1 CAGTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCAAGGGTATTT
* * **
43325486 CAGTCATTTTATCCTTTGAGGGTATTTTGGTCATTTTA-CCTTTTAGGGTATTT
1 CAGTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCAAGGGTATTT
* * **
43325539 CAGTCATTTTACCCTTTGAGGGTATTTTGGTTATTTTACCCTTCGGGGGTATTT
1 CAGTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCAAGGGTATTT
**
43325593 CAGTCATTTTACCCTTCAAGGGTATTTCGGTCA-TTTACCC
1 CAGTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCC
43325633 ACGAATCGCA
Statistics
Matches: 130, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
53 56 0.43
54 74 0.57
ACGTcount: A:0.17, C:0.18, G:0.19, T:0.45
Consensus pattern (54 bp):
CAGTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCAAGGGTATTT
Found at i:43325615 original size:107 final size:107
Alignment explanation
Indices: 43325432--43325628 Score: 313
Period size: 107 Copynumber: 1.8 Consensus size: 107
43325422 AGGGGTATAA
*
43325432 CAGTCATTTTACCCTATGGGGGTATTTCGGTTATTTTACCCTTCAAGGGTATTTCAGTCATTTTA
1 CAGTCATTTTACCCTATGAGGGTATTTCGGTTATTTTACCCTTCAAGGGTATTTCAGTCATTTTA
* ** *
43325497 TCCTTTGAGGGTATTTTGGTCATTTTACCTTTTAGGGTATTT
66 CCCTTCAAGGGTATTTCGGTCATTTTACCTTTTAGGGTATTT
* * **
43325539 CAGTCATTTTACCCTTTGAGGGTATTTTGGTTATTTTACCCTTCGGGGGTATTTCAGTCATTTTA
1 CAGTCATTTTACCCTATGAGGGTATTTCGGTTATTTTACCCTTCAAGGGTATTTCAGTCATTTTA
43325604 CCCTTCAAGGGTATTTCGGTCATTT
66 CCCTTCAAGGGTATTTCGGTCATTT
43325629 ACCCACGAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
107 81 1.00
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (107 bp):
CAGTCATTTTACCCTATGAGGGTATTTCGGTTATTTTACCCTTCAAGGGTATTTCAGTCATTTTA
CCCTTCAAGGGTATTTCGGTCATTTTACCTTTTAGGGTATTT
Done.