Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 138 of 203
Found at i:43990145 original size:20 final size:20
Alignment explanation
Indices: 43990120--43990158 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
43990110 TCGTTTATAA
43990120 AACAATA-AAACAATAAATAT
1 AACAATAGAAA-AATAAATAT
43990140 AACAATAGAAAAATAAATA
1 AACAATAGAAAAATAAATA
43990159 AATATTGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.72, C:0.08, G:0.03, T:0.18
Consensus pattern (20 bp):
AACAATAGAAAAATAAATAT
Found at i:43991117 original size:44 final size:44
Alignment explanation
Indices: 43991057--43991167 Score: 134
Period size: 44 Copynumber: 2.5 Consensus size: 44
43991047 TCTACTCTAT
* * *
43991057 TGCAACTTCAGAGAGATAAGATCT-GTGGTTTTAATCCATTCCAC
1 TGCAACTTCAGGGAGATAAGAT-TAGTGGCTTTAATCCAGTCCAC
* * * **
43991101 TGTAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGGTCCAC
1 TGCAACTTCAGGGAGATAAGATTAGTGGCTTTAATCCAGTCCAC
43991145 TGCAACTTCAGGGAGATAAGATT
1 TGCAACTTCAGGGAGATAAGATT
43991168 CGCCATCTTC
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 1 0.02
44 55 0.98
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.32
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGATTAGTGGCTTTAATCCAGTCCAC
Found at i:43991147 original size:174 final size:174
Alignment explanation
Indices: 43990834--43991165 Score: 468
Period size: 174 Copynumber: 1.9 Consensus size: 174
43990824 ATCTTTAATA
43990834 TGCTCCACTGCAACTTCAGGGAGATAAGACTCGATGTGATCTACTCTATTGCAACTTCAGAGAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTCGATGTGATCTACTCTATTGCAACTTCAGAGAGA
* ** *
43990899 TAAGATCCATCACTCTAATCCACTCCACTACAACTTTAGAGAGACAGGATTTGTTTATTTAGTCT
66 TAAGATCCATCACTCTAATCCACTCCACTACAACTTCAGAGAGACAGGATTTGTGGATTTAATCT
* *
43990964 GCCCCACTGCAATTTCAGGGGGATAAGACTTGCTTTCTTGAGTC
131 GCCCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTGAGTC
43991008 TGCTCCACTGCAACTTCAGGGAGATAAGACTCGATGTGATCTACTCTATTGCAACTTCAGAGAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTCGATGTGATCTACTCTATTGCAACTTCAGAGAGA
** *** * * ** * * *
43991073 TAAGATCTGTGGTTTTAATCCATTCCACTGTAACTTCAGGGAGATAGGATTAT-TGGCTTTAATC
66 TAAGATCCATCACTCTAATCCACTCCACTACAACTTCAGAGAGACAGGATT-TGTGGATTTAATC
**
43991137 TGGTCCACTGCAACTTCAGGGAGATAAGA
130 TGCCCCACTGCAACTTCAGGGAGATAAGA
43991166 TTCGCCATCT
Statistics
Matches: 137, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
174 136 0.99
175 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (174 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGACTCGATGTGATCTACTCTATTGCAACTTCAGAGAGA
TAAGATCCATCACTCTAATCCACTCCACTACAACTTCAGAGAGACAGGATTTGTGGATTTAATCT
GCCCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTGAGTC
Found at i:43991730 original size:50 final size:50
Alignment explanation
Indices: 43991671--43991765 Score: 156
Period size: 50 Copynumber: 1.9 Consensus size: 50
43991661 TCCAAGTCTT
43991671 AACACCAGGG-AGATAAGATTCGCCATCGTGGCTTCAATCTATTCCGCTAC
1 AACACCAGGGAAG-TAAGATTCGCCATCGTGGCTTCAATCTATTCCGCTAC
* *
43991721 AACACCAGGGAAGTAAGATTCGCCGTCGTGGCTTCAATCTTTTCC
1 AACACCAGGGAAGTAAGATTCGCCATCGTGGCTTCAATCTATTCC
43991766 ATTGCAACGT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
50 40 0.95
51 2 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (50 bp):
AACACCAGGGAAGTAAGATTCGCCATCGTGGCTTCAATCTATTCCGCTAC
Found at i:43991858 original size:45 final size:45
Alignment explanation
Indices: 43991809--43991947 Score: 129
Period size: 45 Copynumber: 3.1 Consensus size: 45
43991799 CGATCTGCTT
* *
43991809 CACTGCCAGCACAGGAAGGCGAGATCTGCTATCTTCAACCTACTC
1 CACTGCCAGCACAGGAAGACAAGATCTGCTATCTTCAACCTACTC
* * * * * * * *
43991854 CACTG-CTGCTCAGGGAGACAAG-GCTGGTATCTTCGATCTACTT
1 CACTGCCAGCACAGGAAGACAAGATCTGCTATCTTCAACCTACTC
** * * *
43991897 CACTGCCAATACAGAAAGACAAGATATGCTATTTTCAACCTACTC
1 CACTGCCAGCACAGGAAGACAAGATCTGCTATCTTCAACCTACTC
43991942 CACTGC
1 CACTGC
43991948 TGCTCAGGGA
Statistics
Matches: 69, Mismatches: 23, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
43 21 0.30
44 23 0.33
45 25 0.36
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (45 bp):
CACTGCCAGCACAGGAAGACAAGATCTGCTATCTTCAACCTACTC
Found at i:43991895 original size:43 final size:43
Alignment explanation
Indices: 43991834--43991967 Score: 133
Period size: 43 Copynumber: 3.1 Consensus size: 43
43991824 AAGGCGAGAT
43991834 CTGCTATCTTCAACCTACTCCACTGCTGCTCAGGGAGACAAGG
1 CTGCTATCTTCAACCTACTCCACTGCTGCTCAGGGAGACAAGG
* * * * *** ** *
43991877 CTGGTATCTTCGATCTACTTCACTGCCAATACAGAAAGACAAGAT
1 CTGCTATCTTCAACCTACTCCACTGCTGCT-CAGGGAGACAAG-G
* * *
43991922 ATGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGG
1 CTGCTATCTTCAACCTACTCCACTGCTGCTCAGGGAGACAAGG
43991965 CTG
1 CTG
43991968 AAGTTTCATC
Statistics
Matches: 65, Mismatches: 24, Indels: 4
0.70 0.26 0.04
Matches are distributed among these distances:
43 25 0.38
44 19 0.29
45 21 0.32
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (43 bp):
CTGCTATCTTCAACCTACTCCACTGCTGCTCAGGGAGACAAGG
Found at i:43991944 original size:88 final size:88
Alignment explanation
Indices: 43991795--43991967 Score: 265
Period size: 88 Copynumber: 2.0 Consensus size: 88
43991785 AAGACTAATG
* * * * * *
43991795 TCTTCGATCTGCTTCACTGCCAGCACAGGAAGGCGAGATCTGCTATCTTCAACCTACTCCACTGC
1 TCTTCGATCTACTTCACTGCCAACACAGAAAGACAAGATATGCTATCTTCAACCTACTCCACTGC
43991860 TGCTCAGGGAGACAAGGCTGGTA
66 TGCTCAGGGAGACAAGGCTGGTA
* *
43991883 TCTTCGATCTACTTCACTGCCAATACAGAAAGACAAGATATGCTATTTTCAACCTACTCCACTGC
1 TCTTCGATCTACTTCACTGCCAACACAGAAAGACAAGATATGCTATCTTCAACCTACTCCACTGC
*
43991948 TGCTCAGGGAGATAAGGCTG
66 TGCTCAGGGAGACAAGGCTG
43991968 AAGTTTCATC
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 76 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (88 bp):
TCTTCGATCTACTTCACTGCCAACACAGAAAGACAAGATATGCTATCTTCAACCTACTCCACTGC
TGCTCAGGGAGACAAGGCTGGTA
Found at i:44003985 original size:21 final size:21
Alignment explanation
Indices: 44003943--44003986 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
44003933 AACACAAATT
* *
44003943 AATAAACAAATGAAATAAAAA
1 AATAAAAAAATGAAAGAAAAA
44003964 AATAAAAAAAT-AAAGAATAAA
1 AATAAAAAAATGAAAGAA-AAA
44003985 AA
1 AA
44003987 GTACATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.14
Consensus pattern (21 bp):
AATAAAAAAATGAAAGAAAAA
Found at i:44004245 original size:31 final size:31
Alignment explanation
Indices: 44004212--44004284 Score: 96
Period size: 33 Copynumber: 2.4 Consensus size: 31
44004202 ACGTCTATAT
44004212 ATATAAATATA-AAAAATATTCATT-AAAAA
1 ATATAAATATAGAAAAATATTCATTGAAAAA
**
44004241 ATATAAATATAGAAAAATATTTGTTAGAAAAAA
1 ATATAAATATAGAAAAATATTCATT-G-AAAAA
44004274 ATATAAATATA
1 ATATAAATATA
44004285 TATACATATA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
29 11 0.29
30 11 0.29
33 16 0.42
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (31 bp):
ATATAAATATAGAAAAATATTCATTGAAAAA
Found at i:44004256 original size:16 final size:15
Alignment explanation
Indices: 44004212--44004260 Score: 64
Period size: 14 Copynumber: 3.3 Consensus size: 15
44004202 ACGTCTATAT
44004212 ATATAAATATAAAAA
1 ATATAAATATAAAAA
**
44004227 ATATTCAT-TAAAAA
1 ATATAAATATAAAAA
44004241 ATATAAATATAGAAAA
1 ATATAAATATA-AAAA
44004257 ATAT
1 ATAT
44004261 TTGTTAGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
14 12 0.43
15 8 0.29
16 8 0.29
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATATAAATATAAAAA
Found at i:44009278 original size:13 final size:13
Alignment explanation
Indices: 44009246--44009270 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44009236 TCAATGTTTC
44009246 AAAAAAAGAAAAA
1 AAAAAAAGAAAAA
44009259 AAAAAAAGAAAA
1 AAAAAAAGAAAA
44009271 GGAAAAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAAAAA
Found at i:44012298 original size:24 final size:24
Alignment explanation
Indices: 44012271--44012320 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
44012261 GACGAGTAAG
44012271 TTCGTAAATATTATTATTTAATAT
1 TTCGTAAATATTATTATTTAATAT
44012295 TTCGTAAATATTATTATTTAATAT
1 TTCGTAAATATTATTATTTAATAT
44012319 TT
1 TT
44012321 ACGAGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (24 bp):
TTCGTAAATATTATTATTTAATAT
Found at i:44017146 original size:42 final size:42
Alignment explanation
Indices: 44017099--44017190 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
44017089 ATATTCTAGG
** *
44017099 ATTATTTTATTTTATCTTTTAGTAGTCTATTAGAATAAGGGA
1 ATTATTTTACCTTATCTGTTAGTAGTCTATTAGAATAAGGGA
* *
44017141 ATTATTTTCCCTTATCTGTTAGTAGTTTATTAGAATAAGGGA
1 ATTATTTTACCTTATCTGTTAGTAGTCTATTAGAATAAGGGA
44017183 ATTATTTT
1 ATTATTTT
44017191 TCCAATTAGG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (42 bp):
ATTATTTTACCTTATCTGTTAGTAGTCTATTAGAATAAGGGA
Found at i:44021653 original size:26 final size:26
Alignment explanation
Indices: 44021617--44021685 Score: 111
Period size: 26 Copynumber: 2.7 Consensus size: 26
44021607 TTTACATCAT
*
44021617 TGCTCACACGAGCTGTGAAATGGGTA
1 TGCTCACACGAGCTGTGAAATGGGCA
* *
44021643 TGCTCACACGAGCTGTAAAATGGGCC
1 TGCTCACACGAGCTGTGAAATGGGCA
44021669 TGCTCACACGAGCTGTG
1 TGCTCACACGAGCTGTG
44021686 GATCGGAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.22
Consensus pattern (26 bp):
TGCTCACACGAGCTGTGAAATGGGCA
Found at i:44032702 original size:57 final size:57
Alignment explanation
Indices: 44032631--44032741 Score: 222
Period size: 57 Copynumber: 1.9 Consensus size: 57
44032621 GCACCGGTGA
44032631 ACTCTCAACCTAATGCTAGTAACCCGAATGATGAAGCTAGACAAGCTTTCTATACGG
1 ACTCTCAACCTAATGCTAGTAACCCGAATGATGAAGCTAGACAAGCTTTCTATACGG
44032688 ACTCTCAACCTAATGCTAGTAACCCGAATGATGAAGCTAGACAAGCTTTCTATA
1 ACTCTCAACCTAATGCTAGTAACCCGAATGATGAAGCTAGACAAGCTTTCTATA
44032742 GCGTGATGAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.25
Consensus pattern (57 bp):
ACTCTCAACCTAATGCTAGTAACCCGAATGATGAAGCTAGACAAGCTTTCTATACGG
Found at i:44035662 original size:319 final size:319
Alignment explanation
Indices: 44035104--44035743 Score: 1262
Period size: 319 Copynumber: 2.0 Consensus size: 319
44035094 TGGTATCCGC
44035104 ATCGGGTATTCGAGTTGACCCGAGCAAAATTTCAGCCATACTTAACTGGAAGCCTCCAAGAAATA
1 ATCGGGTATTCGAGTTGACCCGAGCAAAATTTCAGCCATACTTAACTGGAAGCCTCCAAGAAATA
44035169 TTACCGAAGTTCGGAGCTTCCTGGGACTCGCCGGTTATTACCGACGATTTGTCAAAGGTTTCTCG
66 TTACCGAAGTTCGGAGCTTCCTGGGACTCGCCGGTTATTACCGACGATTTGTCAAAGGTTTCTCG
44035234 ATGATAGCCACACCAATGACGAAGCTACTTCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATG
131 ATGATAGCCACACCAATGACGAAGCTACTTCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATG
44035299 TCAGAAAAGTTTTGATCAACTAAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAAT
196 TCAGAAAAGTTTTGATCAACTAAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAAT
44035364 CAGGCAAAGAGTTTGTCATTTATAGTGACGCATCCCTACTTGGGTTGGGTTGCGTATTG
261 CAGGCAAAGAGTTTGTCATTTATAGTGACGCATCCCTACTTGGGTTGGGTTGCGTATTG
*
44035423 ATCGGGTATTCGAGTTGACCCGAGCAAAATTTCAGCCATACTTAACTGGAAGCCTTCAAGAAATA
1 ATCGGGTATTCGAGTTGACCCGAGCAAAATTTCAGCCATACTTAACTGGAAGCCTCCAAGAAATA
*
44035488 TTACCGAAGTTCGGAGCTTCCTGGGGCTCGCCGGTTATTACCGACGATTTGTCAAAGGTTTCTCG
66 TTACCGAAGTTCGGAGCTTCCTGGGACTCGCCGGTTATTACCGACGATTTGTCAAAGGTTTCTCG
44035553 ATGATAGCCACACCAATGACGAAGCTACTTCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATG
131 ATGATAGCCACACCAATGACGAAGCTACTTCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATG
44035618 TCAGAAAAGTTTTGATCAACTAAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAAT
196 TCAGAAAAGTTTTGATCAACTAAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAAT
44035683 CAGGCAAAGAGTTTGTCATTTATAGTGACGCATCCCTACTTGGGTTGGGTTGCGTATTG
261 CAGGCAAAGAGTTTGTCATTTATAGTGACGCATCCCTACTTGGGTTGGGTTGCGTATTG
44035742 AT
1 AT
44035744 GCAAGAAGGT
Statistics
Matches: 319, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
319 319 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (319 bp):
ATCGGGTATTCGAGTTGACCCGAGCAAAATTTCAGCCATACTTAACTGGAAGCCTCCAAGAAATA
TTACCGAAGTTCGGAGCTTCCTGGGACTCGCCGGTTATTACCGACGATTTGTCAAAGGTTTCTCG
ATGATAGCCACACCAATGACGAAGCTACTTCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATG
TCAGAAAAGTTTTGATCAACTAAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAAT
CAGGCAAAGAGTTTGTCATTTATAGTGACGCATCCCTACTTGGGTTGGGTTGCGTATTG
Found at i:44039396 original size:79 final size:81
Alignment explanation
Indices: 44039260--44039444 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
44039250 TTGAATGATG
* *
44039260 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGGGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGGGACCAAATCCGGACTAAGATCCGAAGGCAAT
44039324 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* ** * **
44039339 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGGGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
44039401 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
44039419 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
44039445 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGGGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:44039458 original size:40 final size:40
Alignment explanation
Indices: 44039261--44039444 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
44039251 TGAATGATGT
* ** * *
44039261 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGGGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
44039301 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
44039341 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
44039379 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
44039420 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
44039445 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:44039466 original size:79 final size:79
Alignment explanation
Indices: 44039313--44039477 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
44039303 GGACTAAGAT
* * **
44039313 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
44039378 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
44039392 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
44039455 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
44039471 CCGAAGG
1 CCGAAGG
44039478 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:44041711 original size:19 final size:20
Alignment explanation
Indices: 44041683--44041726 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
44041673 TCACGGTTTT
44041683 TAAAAAACAAA-GGC-TTTC
1 TAAAAAACAAACGGCATTTC
*
44041701 TAAAAACACAAACTGCATTTC
1 TAAAAA-ACAAACGGCATTTC
44041722 TAAAA
1 TAAAA
44041727 CATAAAAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 6 0.27
19 5 0.23
20 2 0.09
21 9 0.41
ACGTcount: A:0.52, C:0.18, G:0.07, T:0.23
Consensus pattern (20 bp):
TAAAAAACAAACGGCATTTC
Found at i:44043978 original size:9 final size:9
Alignment explanation
Indices: 44043964--44043989 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
44043954 TTTAATCCAT
44043964 TTTTAGTTA
1 TTTTAGTTA
44043973 TTTTAGTTA
1 TTTTAGTTA
44043982 TTTTAGTT
1 TTTTAGTT
44043990 TGAACATCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.69
Consensus pattern (9 bp):
TTTTAGTTA
Found at i:44044038 original size:39 final size:39
Alignment explanation
Indices: 44043984--44044097 Score: 203
Period size: 39 Copynumber: 2.9 Consensus size: 39
44043974 TTTAGTTATT
*
44043984 TTAGTTTGAACATCATTAATATGAGTCTTTAATTATGTC
1 TTAGTTTGAACATCATTAATATGTGTCTTTAATTATGTC
44044023 TTAGTTTGAACATCATTAATATGTGTCTTTAATTATGTC
1 TTAGTTTGAACATCATTAATATGTGTCTTTAATTATGTC
*
44044062 TTAGTTTGAATATCATTAATATGTGT-TTTAATTATG
1 TTAGTTTGAACATCATTAATATGTGTCTTTAATTATG
44044098 ACATAACTAA
Statistics
Matches: 73, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
38 10 0.14
39 63 0.86
ACGTcount: A:0.30, C:0.08, G:0.13, T:0.49
Consensus pattern (39 bp):
TTAGTTTGAACATCATTAATATGTGTCTTTAATTATGTC
Found at i:44045012 original size:11 final size:11
Alignment explanation
Indices: 44044979--44045012 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
44044969 TCGGGGTTGG
44044979 AATTTGAAAAA
1 AATTTGAAAAA
44044990 AATGTTGAAAAA
1 AAT-TTGAAAAA
44045002 AATTTGGAAAA
1 AATTT-GAAAA
44045013 TAGAATCAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (11 bp):
AATTTGAAAAA
Found at i:44049772 original size:36 final size:36
Alignment explanation
Indices: 44049732--44049803 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
44049722 GAAGTACAAG
* * * *
44049732 GAAGCCATCACAGGTCTCATTGATCGAGTTTGGGCA
1 GAAGCCATCACAGGACTAATTGATCAAGCTTGGGCA
* *
44049768 GAAGCTATCACGGGACTAATTGATCAAGCTTGGGCA
1 GAAGCCATCACAGGACTAATTGATCAAGCTTGGGCA
44049804 TGCACTCCAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (36 bp):
GAAGCCATCACAGGACTAATTGATCAAGCTTGGGCA
Found at i:44049949 original size:39 final size:39
Alignment explanation
Indices: 44049906--44050057 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
44049896 TTTAGTTATT
44049906 TTAGTTTGAACATCATTAATATGAGTCTTTAATTATGTC
1 TTAGTTTGAACATCATTAATATGAGTCTTTAATTATGTC
44049945 TTAGTTTGAACATCATTAATATGAGTCTTTAATTATGTC
1 TTAGTTTGAACATCATTAATATGAGTCTTTAATTATGTC
** *
44049984 TTAGTTTGAACATCATTAATATGTTTCTTTAATTATGTA
1 TTAGTTTGAACATCATTAATATGAGTCTTTAATTATGTC
* * *
44050023 TTAGTTTTAATATCATTAATATGTGT-TTTAATTAT
1 TTAGTTTGAACATCATTAATATGAGTCTTTAATTAT
44050058 CTGTTTTAGT
Statistics
Matches: 107, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
38 9 0.08
39 98 0.92
ACGTcount: A:0.31, C:0.08, G:0.11, T:0.50
Consensus pattern (39 bp):
TTAGTTTGAACATCATTAATATGAGTCTTTAATTATGTC
Found at i:44054752 original size:13 final size:13
Alignment explanation
Indices: 44054736--44054763 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
44054726 TTTTAACCAC
44054736 TTCAATTAATTAA
1 TTCAATTAATTAA
44054749 TTCAATTAATTAA
1 TTCAATTAATTAA
44054762 TT
1 TT
44054764 AAAACCCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (13 bp):
TTCAATTAATTAA
Found at i:44057498 original size:50 final size:50
Alignment explanation
Indices: 44057432--44057617 Score: 182
Period size: 50 Copynumber: 3.7 Consensus size: 50
44057422 AAAGTGAAAG
*
44057432 TGAT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
* * * * *
44057481 TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTAGC-AAA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
* *** * *
44057530 TAGTTTCTATCACGTGTGTAGTACTATGTGCAGGCTACTAC-TGTATCGG-A
1 T-G-ATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
* *
44057580 TGGTAATGGTCACATGTGTAGAACTATGTGCAGGCTAC
1 TGAT-A-GGTCACATGTGTAGTACTATGTGCAGGCTAC
44057618 AATGTGAATG
Statistics
Matches: 109, Mismatches: 22, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
48 1 0.01
49 8 0.07
50 70 0.64
51 30 0.28
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (50 bp):
TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
Found at i:44057694 original size:45 final size:45
Alignment explanation
Indices: 44057630--44057717 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
44057620 TGTGAATGGA
*
44057630 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACTAG
1 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGAATCCACTAG
*
44057675 ACATCATTGATT-GATAAGGTGGTTGTTATGTGCTGAATCCACT
1 ACATCATTGATTAG-TAAGGTGGTTGCTATGTGCTGAATCCACT
44057718 GAGTATCTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 1 0.03
45 39 0.98
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (45 bp):
ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGAATCCACTAG
Found at i:44058751 original size:20 final size:20
Alignment explanation
Indices: 44058726--44058768 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
44058716 GGTATGTAGC
44058726 AATGTCAAAAATGGTTTATG
1 AATGTCAAAAATGGTTTATG
44058746 AATGTCAAAAATGGTTTATG
1 AATGTCAAAAATGGTTTATG
44058766 AAT
1 AAT
44058769 TAACTCATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.05, G:0.19, T:0.35
Consensus pattern (20 bp):
AATGTCAAAAATGGTTTATG
Found at i:44059844 original size:22 final size:23
Alignment explanation
Indices: 44059816--44059861 Score: 85
Period size: 22 Copynumber: 2.0 Consensus size: 23
44059806 AATAACAAGA
44059816 CAAGAATCCCCC-TTTTATTTTT
1 CAAGAATCCCCCTTTTTATTTTT
44059838 CAAGAATCCCCCTTTTTATTTTT
1 CAAGAATCCCCCTTTTTATTTTT
44059861 C
1 C
44059862 TGACTCATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.22, C:0.28, G:0.04, T:0.46
Consensus pattern (23 bp):
CAAGAATCCCCCTTTTTATTTTT
Found at i:44059985 original size:24 final size:24
Alignment explanation
Indices: 44059956--44060005 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
44059946 TGTAAGAGAT
44059956 ATTCTTAAAAGTATTTCGAATTGA
1 ATTCTTAAAAGTATTTCGAATTGA
44059980 ATTCTTAAAAGTATTTCGAATTGA
1 ATTCTTAAAAGTATTTCGAATTGA
44060004 AT
1 AT
44060006 CATCCCTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (24 bp):
ATTCTTAAAAGTATTTCGAATTGA
Found at i:44065925 original size:70 final size:71
Alignment explanation
Indices: 44065756--44065965 Score: 277
Period size: 70 Copynumber: 3.0 Consensus size: 71
44065746 TCTTTTCAAA
*
44065756 CTCAAGTTTTAAACGATCTCGAGAATT---AAGAGATTGTGTCCTAA-TTCACTGGGCATGATCC
1 CTCAAGTTTTAAACGATCTCGAGAATTAAGAAGAGATCGTGTCCTAACTT-ACTGGGCATGATCC
44065817 CTTTTTTT
65 C-TTTTTT
* * * * * * *
44065825 TTAAAGTTTAAAACGATCTTGGGAATTAAGAAGAGATCATGTCCTAACTTACTAGGCATGAT-CC
1 CTCAAGTTTTAAACGATCTCGAGAATTAAGAAGAGATCGTGTCCTAACTTACTGGGCATGATCCC
44065889 TTTTTT
66 TTTTTT
* *
44065895 CTCAAGTTTTAAACGATCTCAAGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCC
1 CTCAAGTTTTAAACGATCTCGAGAATTAAGAAGAGATCGTGTCCTAACTTACTGGGCATGATCCC
44065960 TTTTTT
66 TTTTTT
44065966 AAATCTGAGA
Statistics
Matches: 119, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
69 22 0.18
70 59 0.50
71 10 0.08
72 26 0.22
73 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (71 bp):
CTCAAGTTTTAAACGATCTCGAGAATTAAGAAGAGATCGTGTCCTAACTTACTGGGCATGATCCC
TTTTTT
Found at i:44069359 original size:43 final size:43
Alignment explanation
Indices: 44069293--44069418 Score: 152
Period size: 43 Copynumber: 2.9 Consensus size: 43
44069283 TTTTAGCCCG
*
44069293 CACATCCCAGGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGT-
1 CACAT-CCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC-TA
44069337 C-CATCCAAGCACCAAGGTTGCCGATGGTG-TCTGAGGCT-CCTA
1 CACATCCAAGCACCAAGG-TGCCGATGGTGCTC-GAGGCTCCCTA
* *
44069379 CACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGGCTC
1 CACATCCAAG-CACCAAGGTGCCGATGGTGCTCGAGGCTC
44069419 TCGCACGACT
Statistics
Matches: 72, Mismatches: 3, Indels: 14
0.81 0.03 0.16
Matches are distributed among these distances:
41 1 0.01
42 17 0.24
43 44 0.61
44 10 0.14
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.17
Consensus pattern (43 bp):
CACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCTA
Found at i:44069449 original size:43 final size:44
Alignment explanation
Indices: 44069398--44070309 Score: 181
Period size: 43 Copynumber: 21.2 Consensus size: 44
44069388 GCCACCAAGG
* *
44069398 TGCCGATGGTGCCC-GAGGCT-CTCGCACGACTAAGAGCCTATTT
1 TGCCGATGGTGCCCTGAGGCTCCT-GCACGACCAAGAGCCTAGTT
* * *
44069441 TGCTGATGGT-CCCTGAGGCTCCTGCACGACCAAGGGCTTAGTT
1 TGCCGATGGTGCCCTGAGGCTCCTGCACGACCAAGAGCCTAGTT
** * * * * * *
44069484 TGCCGATGGTGATC-AAGGCTCCCGCAC-ATC-TGAGCGTCCAG-G
1 TGCCGATGGTGCCCTGAGGCTCCTGCACGACCAAGAGC--CTAGTT
* * *
44069526 TGCCGATGGTGCCC-AAGGC-CCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCTGAGGCTCCT-GCACGACCAAGAGCCTAGTT
* * * * * * * * * *
44069569 TGCTGATGCTGTCC-AAGGTTCCCGC-CCATCCAACA-CCAAG-G
1 TGCCGATGGTGCCCTGAGGCTCCTGCACGA-CCAAGAGCCTAGTT
* * * * * * * *
44069610 TGTCGGTGGTGCTC-GAGGCTCCCGGAC-ATCATAGCA-CCAAG-G
1 TGCCGATGGTGCCCTGAGGCTCCTGCACGACCA-AG-AGCCTAGTT
* * * * * *
44069652 TGCTGATGATGCCCT-AGGCTCCCGAATGACCAAGGGCCTAGTT
1 TGCCGATGGTGCCCTGAGGCTCCTGCACGACCAAGAGCCTAGTT
* * * * *
44069695 TGTCGATGGTGTCC-GAGGCT-CTCGTAC-ATCCAAGTGCCTAG-G
1 TGCCGATGGTGCCCTGAGGCTCCT-GCACGA-CCAAGAGCCTAGTT
* * * * *
44069737 TGCCGATGGTGCCC-GACGCT-TTCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCTGAGGCTCCT-GCACGACCAAGAGCCTAGTT
* ** * *
44069780 AGCCGATGGTGCCC-GAGGCTCCCCCAAGACCAAGGGCCTAGTT
1 TGCCGATGGTGCCCTGAGGCTCCTGCACGACCAAGAGCCTAGTT
* * * * * *
44069823 TGTCGATGGTGTCC-AAGGCTCCCGCAC-ATCCGAGTA-CCTAG-G
1 TGCCGATGGTGCCCTGAGGCTCCTGCACGA-CCAAG-AGCCTAGTT
* * * *
44069865 TGCCGATGGTGCTC-GAGACTCTCACATGACCGTAAGACCAAGGGCCTAGTT
1 TGCCGATGGTGCCCTGAG--GCTC-C-TG--C--ACGACCAAGAGCCTAGTT
* * *
44069916 TGCCGATGGTGTCC-GAGGATCCTGCAC-ATCCAAGCA-CCTAG-G
1 TGCCGATGGTGCCCTGAGGCTCCTGCACGA-CCAAG-AGCCTAGTT
* * * * * *
44069958 TGCCAATAGTG-CCTGAGGCT-CTCACACAACCAAGGGCCTATTT
1 TGCCGATGGTGCCCTGAGGCTCCT-GCACGACCAAGAGCCTAGTT
* * *
44070001 TGCCGATGGTGCTC-GAGGCTCCCGCACGACCAAGGGCCTAG-T
1 TGCCGATGGTGCCCTGAGGCTCCTGCACGACCAAGAGCCTAGTT
* * * ** *
44070043 TACCGATGGTGCCC-GAGGCTCCCGCACGACCAAGGGTTTTGTT
1 TGCCGATGGTGCCCTGAGGCTCCTGCACGACCAAGAGCCTAGTT
* *** * * * *
44070086 TGCCGATGGTG-TCTG-GCGCTCCCAAAC-ATCCGAGCGCCCAG-G
1 TGCCGATGGTGCCCTGAG-GCTCCTGCACGA-CCAAGAGCCTAGTT
* * * *
44070128 TCCCAATGGTGCCC-GAGGCT-CTCGCACGATCAAGGGCCTA-TGT
1 TGCCGATGGTGCCCTGAGGCTCCT-GCACGACCAAGAGCCTAGT-T
* * * * *
44070171 GGCCGATGGTGTCC-GA-GCTCCCGCAC-ATCCAAGCCA-CCAAG-G
1 TGCCGATGGTGCCCTGAGGCTCCTGCACGA-CCAAG--AGCCTAGTT
* *
44070213 TGCC-AGTGGTGCCC-AAGGCTCTTGCACGACCAAG-GACCTAGTT
1 TGCCGA-TGGTGCCCTGAGGCTCCTGCACGACCAAGAG-CCTAGTT
* * *
44070256 TGCTGATGGT-CCCCGAGGCT-CTCGCACGACCAAGAGCTTAGTT
1 TGCCGATGGTGCCCTGAGGCTCCT-GCACGACCAAGAGCCTAGTT
*
44070299 TTCCGATGGTG
1 TGCCGATGGTG
44070310 TCCGAGCCTC
Statistics
Matches: 628, Mismatches: 169, Indels: 143
0.67 0.18 0.15
Matches are distributed among these distances:
40 2 0.00
41 30 0.05
42 235 0.37
43 310 0.49
44 16 0.03
45 2 0.00
46 1 0.00
47 2 0.00
48 2 0.00
49 2 0.00
50 10 0.02
51 16 0.03
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.20
Consensus pattern (44 bp):
TGCCGATGGTGCCCTGAGGCTCCTGCACGACCAAGAGCCTAGTT
Found at i:44069818 original size:128 final size:128
Alignment explanation
Indices: 44069656--44070959 Score: 491
Period size: 128 Copynumber: 10.1 Consensus size: 128
44069646 CCAAGGTGCT
* * * * * **
44069656 GATGATGCCCTAGGCT-CCCGAATGACCAAGGGCCTAGTTTGTCGATGGTGTCCGAGGCTCTCGT
1 GATGGTGCCCGAGGCTCCCCCAA-GACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCAC
* *
44069720 ACATCCAAGTGCCTAGGTGCCGATGGTGCCCGACGCTTTCACACGACCAAGGGCCTAGGTAGCC
65 ACATCCAAGTGCCTAGGTGCCGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGGTAGCC
* * *
44069784 GATGGTGCCCGAGGCTCCCCCAAGACCAAGGGCCTAGTTTGTCGATGGTGTCCAAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCCCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCACA
* * * *
44069849 CATCCGAGTACCTAGGTGCCGATGGTGCTCGAGACTCTCACATGACCGTAAGACCAAGGGCCTAG
66 CATCCAAGTGCCTAGGTGCCGATGGTGCCCGAGGCTCTCAC---A-C----GACCAAGGGCCTAG
* *
44069914 TTTGCC
123 GTAGCC
* * ** * ** * * * *
44069920 GATGGTGTCCGAGGATCCTGCACA-TCCAAGCACCTAG-GTGCCAATAGTG-CCTGAGGCTCTCA
1 GATGGTGCCCGAGGCTCCCCCA-AGACCAAGGGCCTAGTTTGCCGATGGTGTCC-GAGGCTCCCA
* * ** * * * *
44069982 CACAACCAAGGGCCTATTTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGTTA-C
64 CACATCCAAGTGCCTA-GGTGCCGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGGTAGC
44070046 C
128 C
* * ** * * *
44070047 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGTTTTGTTTGCCGATGGTGTCTG-GCGCTCCCAA
1 GATGGTGCCCGAGGCTCCCCCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAG-GCTCCCAC
* * * * * * * * *
44070111 ACATCCGAGCGCCCAGGTCCCAATGGTGCCCGAGGCTCTCGCACGATCAAGGGCCTATGTGGCC
65 ACATCCAAGTGCCTAGGTGCCGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGGTAGCC
* * * ** * * * * **
44070175 GATGGTGTCCGA-GCTCCCGCACA-TCCAAGCCACCAAG-GTGCC-AGTGGTGCCCAAGGCTCTT
1 GATGGTGCCCGAGGCTCCCCCA-AGACCAAG-GGCCTAGTTTGCCGA-TGGTGTCCGAGGCTCCC
* * * * * * * *
44070236 GCACGA-CCAAG-GACCTAGTTTGCTGATGGTCCCCGAGGCTCTCGCACGACCAAGAGCTTAGTT
63 ACAC-ATCCAAGTG-CCTAG-GTGCCGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGGT
**
44070299 TTCC
125 AGCC
* * * * * * * * * * **
44070303 GATGGTGTCCGAGCCTCCCGCACA-TCTATGGGCCCAG-GTGCCGATGGTGCCCGAGGCTCTCGT
1 GATGGTGCCCGAGGCTCCCCCA-AGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCAC
* * * * * * * * ** * *
44070366 ACAACCACGGGCCTATGTTGCCTATGGTGTCCGAGGTTCTCGCAC-ATCCAAGCACCAAGGT-GT
65 ACATCCAAGTGCCTA-GGTGCCGATGGTGCCCGAGGCTCTCACACGA-CCAAGGGCCTAGGTAGC
44070429 C
128 C
* * * ** * * * ** * * * *
44070430 AATGATGCTCGAGGCTCCCGTACGATCAAGGGCCTAGGTTGCCGACAGTGTCTGAGCCTCACGCA
1 GATGGTGCCCGAGGCTCCCCCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCACA
** * * * ** * * *
44070495 CAT-CATAGCACCGAGCTGTCGATGGTGCCCGAAACTTTCGCACGACCAAGGGCCTAGGTTGCC
66 CATCCA-AGTGCCTAGGTGCCGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGGTAGCC
** * * * * * ** * * * *
44070558 GACAGTGTCCGAGGCTTCCGC-ACATCATAGCACCGAG-TAGCCGATGGTGCCCGAGGCTCCCGC
1 GATGGTGCCCGAGGCTCCCCCAAGACCA-AGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCAC
* * * * *** * * * * *
44070621 ACAACCAAGGGCCTAGTTTACCGATGGTGTTTGAGGCTCTCGCAC-ATCCGAGTGCCCAAGT-GC
65 ACATCCAAGTGCCTAG-GTGCCGATGGTGCCCGAGGCTCTCACACGA-CCAAGGGCCTAGGTAGC
44070684 C
128 C
* ** * * * * * * *
44070685 GATGGTTCCCGAGGCTTTCACACGACCAAGGGCCTTGGTAGCCGATGGTGCCCGAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCCCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCACA
* * * * * * * * * *
44070750 -AGACCAAGGGCCTAGTTTACCGATAGTGTCCGAGGCTCCCACAC-ATCCGAGCGCCCAGGT-GC
66 CA-TCCAAGTGCCTAG-GTGCCGATGGTGCCCGAGGCTCTCACACGA-CCAAGGGCCTAGGTAGC
44070812 C
128 C
* * * * ** * *
44070813 GATGGTGCCTGAGGATCCCGCACGACCAAGGGCCTTA-TTTGTTGATAGTGTCCGAGGCTCCCGC
1 GATGGTGCCCGAGGCTCCCCCAAGACCAAGGGCC-TAGTTTGCCGATGGTGTCCGAGGCTCCCAC
* * * ** * *
44070877 ACATCCAAGCT-CCTAGGTGCCGATGGTTCCCGAGGATCCCGTACGACCAAGGGCCTTGGTTGCC
65 ACATCCAAG-TGCCTAGGTGCCGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGGTAGCC
* *
44070941 GATGGTGTCCAAGGCTCCC
1 GATGGTGCCCGAGGCTCCC
44070960 GCACATCCTA
Statistics
Matches: 883, Mismatches: 246, Indels: 94
0.72 0.20 0.08
Matches are distributed among these distances:
126 2 0.00
127 251 0.28
128 503 0.57
129 25 0.03
131 1 0.00
132 2 0.00
133 1 0.00
134 2 0.00
135 27 0.03
136 68 0.08
137 1 0.00
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.20
Consensus pattern (128 bp):
GATGGTGCCCGAGGCTCCCCCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCACA
CATCCAAGTGCCTAGGTGCCGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGGTAGCC
Found at i:44069870 original size:85 final size:85
Alignment explanation
Indices: 44069445--44071018 Score: 668
Period size: 85 Copynumber: 18.4 Consensus size: 85
44069435 CTATTTTGCT
* * * *
44069445 GATGGT-CCCTGAGGCTCCTGCACGACCAAGGGCTTAGTTTGCCGATGGTGAT-CAAGGCTCCCG
1 GATGGTGCCC-GAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTG-TCCGAGGCTCCCG
** *
44069508 CACATCTGAGCGTCC-AGGTGCC
64 CACATCCAAGC-ACCTAGGTGCC
* * * * * * *
44069530 GATGGTGCCCAAGGC-CCTCGCACGACCAAGGGCCTAGGTTGCTGATGCTGTCCAAGGTTCCCGC
1 GATGGTGCCCGAGGCTCC-CGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGC
* * *
44069594 CCATCCAA-CACCAAGGTGTC
65 ACATCCAAGCACCTAGGTGCC
* * * * * ** * * * * * *
44069614 GGTGGTGCTCGAGGCTCCCG-GACATCATAGCACCAAG-GTGCTGATGATGCCCTAGGCTCCCG-
1 GATGGTGCCCGAGGCTCCCGCAAGACCA-AGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGC
** * *
44069676 A-ATGACCAAGGGCCTAGTTTGTC
65 ACAT--CCAAGCACCTAG-GTGCC
* * * * * * * * ** *
44069699 GATGGTGTCCGAGGCTCTCGTACA-TCCAAGTGCCTAG-GTGCCGATGGTGCCCGACGCTTTCAC
1 GATGGTGCCCGAGGCTCCCGCA-AGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGC
**
44069762 ACGA-CCAAGGGCCTAGGTAGCC
65 AC-ATCCAAGCACCTAGGT-GCC
* * *
44069784 GATGGTGCCCGAGGCTCCCCCAAGACCAAGGGCCTAGTTTGTCGATGGTGTCCAAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCA
* *
44069849 CATCCGAGTACCTAGGTGCC
66 CATCCAAGCACCTAGGTGCC
* *
44069869 GATGGTGCTCGAGACTCTCACATGACCGTAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
1 GATGGTGCCCGAGGCTC-C-C--G--C--AAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
* *
44069934 ATCCTGCACATCCAAGCACCTAGGTGCC
58 CTCCCGCACATCCAAGCACCTAGGTGCC
* * * * * *
44069962 AATAGTGCCTGAGGCTCTCACACA-ACCAAGGGCCTATTTTGCCGATGGTG-CTCGAGGCTCCCG
1 GATGGTGCCCGAGGCTCCCGCA-AGACCAAGGGCCTAGTTTGCCGATGGTGTC-CGAGGCTCCCG
** * *
44070025 CACGA-CCAAGGGCCTAGTTACC
64 CAC-ATCCAAGCACCTAGGTGCC
* ** * * **
44070047 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGTTTTGTTTGCCGATGGTGTCTG-GCGCTCCCAA
1 GATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAG-GCTCCCGC
* * * *
44070111 ACATCCGAGCGCCCAGGTCCC
65 ACATCCAAGCACCTAGGTGCC
* * * * *
44070132 AATGGTGCCCGAGGCTCTCGCACGATCAAGGGCCTA-TGTGGCCGATGGTGTCCGA-GCTCCCGC
1 GATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGT-TTGCCGATGGTGTCCGAGGCTCCCGC
*
44070195 ACATCCAAGCCACCAAGGTGCC
65 ACATCCAAG-CACCTAGGTGCC
* ** * * * ** *
44070217 -AGTGGTGCCCAAGGCTCTTGCACGACCAAGGACCTAGTTTGCTGATGGTCCCCGAGGCTCTCGC
1 GA-TGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGC
* * *
44070281 ACGA-CCAAG-AGCTTAGTTTTCC
65 AC-ATCCAAGCA-CCTAG-GTGCC
* * * * * * * * * *
44070303 GATGGTGTCCGAGCCTCCCGCACA-TCTATGGGCCCAG-GTGCCGATGGTGCCCGAGGCTCTCGT
1 GATGGTGCCCGAGGCTCCCGCA-AGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGC
* * ** *
44070366 ACAACCACGGGCCTATGTTGCC
65 ACATCCAAGCACCTA-GGTGCC
* * * * * ** * * * * *
44070388 TATGGTGTCCGAGGTTCTCGCACA-TCCAAGCACCAAG-GTGTCAATGATG-CTCGAGGCTCCCG
1 GATGGTGCCCGAGGCTCCCGCA-AGACCAAGGGCCTAGTTTGCCGATGGTGTC-CGAGGCTCCCG
* **
44070450 TACGAT-CAAGGGCCTAGGTTGCC
64 CAC-ATCCAAGCACCTAGG-TGCC
** * * * * * * ** * * * * ** **
44070473 GACAGTGTCTGAGCCTCACGC-ACATCATAGCACCGAG-CTGTCGATGGTGCCCGAAACTTTCGC
1 GATGGTGCCCGAGGCTCCCGCAAGACCA-AGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGC
**
44070536 ACGA-CCAAGGGCCTAGGTTGCC
65 AC-ATCCAAGCACCTAGG-TGCC
** * * * * ** * * *
44070558 GACAGTGTCCGAGGCTTCCGC-ACATCATAGCACCGAG-TAGCCGATGGTGCCCGAGGCTCCCGC
1 GATGGTGCCCGAGGCTCCCGCAAGACCA-AGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGC
* ** * *
44070621 ACAACCAAGGGCCTAGTTTACC
65 ACATCCAAGCACCTAG-GTGCC
*** * * * * * **
44070643 GATGGTGTTTGAGGCTCTCGCACA-TCCGAGTGCCCAAG--TGCCGATGGT-TCCCGAGGCTTTC
1 GATGGTGCCCGAGGCTCCCGCA-AGACCAAG-GGCCTAGTTTGCCGATGGTGT-CCGAGGCTCCC
* ** *
44070704 ACACGA-CCAAGGGCCTTGGTAGCC
63 GCAC-ATCCAAGCACCTAGGT-GCC
* * *
44070728 GATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTACCGATAGTGTCCGAGGCTCCCACA
1 GATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCA
* * *
44070793 CATCCGAGCGCCCAGGTGCC
66 CATCCAAGCACCTAGGTGCC
* * * ** *
44070813 GATGGTGCCTGAGGATCCCGCACGACCAAGGGCCTTA-TTTGTTGATAGTGTCCGAGGCTCCCGC
1 GATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCC-TAGTTTGCCGATGGTGTCCGAGGCTCCCGC
*
44070877 ACATCCAAGCTCCTAGGTGCC
65 ACATCCAAGCACCTAGGTGCC
* * * * * * *
44070898 GATGGTTCCCGAGGATCCCGTACGACCAAGGGCCTTGGTTGCCGATGGTGTCCAAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCA
* *
44070963 CATCCTAGCACCAAGGTGCC
66 CATCCAAGCACCTAGGTGCC
* * *
44070983 GATGGTGCCTGAGGCTCCCGCACGACCAAGGACCTA
1 GATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTA
44071019 TGCTACCGAA
Statistics
Matches: 1153, Mismatches: 266, Indels: 140
0.74 0.17 0.09
Matches are distributed among these distances:
81 2 0.00
83 30 0.03
84 70 0.06
85 847 0.73
86 124 0.11
87 7 0.01
88 1 0.00
91 2 0.00
93 70 0.06
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.20
Consensus pattern (85 bp):
GATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCA
CATCCAAGCACCTAGGTGCC
Found at i:44069917 original size:93 final size:93
Alignment explanation
Indices: 44069805--44069983 Score: 261
Period size: 93 Copynumber: 1.9 Consensus size: 93
44069795 AGGCTCCCCC
* * * * *
44069805 AAGACCAAGGGCCTAGTTTGTCGATGGTGTCCAAGGCTCCCGCACATCCGAGTACCTAGGTGCCG
1 AAGACCAAGGGCCTAGTTTGCCGATGGTGTCCAAGGATCCCGCACATCCAAGCACCTAGGTGCCA
*
44069870 ATGGTG-CTCGAGACTCTCACATGACCGT
66 ATAGTGCCT-GAGACTCTCACATGACCGT
* *
44069898 AAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGATCCTGCACATCCAAGCACCTAGGTGCCA
1 AAGACCAAGGGCCTAGTTTGCCGATGGTGTCCAAGGATCCCGCACATCCAAGCACCTAGGTGCCA
*
44069963 ATAGTGCCTGAGGCTCTCACA
66 ATAGTGCCTGAGACTCTCACA
44069984 CAACCAAGGG
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
93 74 0.97
94 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (93 bp):
AAGACCAAGGGCCTAGTTTGCCGATGGTGTCCAAGGATCCCGCACATCCAAGCACCTAGGTGCCA
ATAGTGCCTGAGACTCTCACATGACCGT
Found at i:44070096 original size:221 final size:221
Alignment explanation
Indices: 44069679--44070077 Score: 552
Period size: 221 Copynumber: 1.8 Consensus size: 221
44069669 GCTCCCGAAT
* * * ** *
44069679 GACCAAGGGCCTAGTTTGTCGATGGTGTCCGAGGCTCTCGTACATCCAAGTGCCTAGGTGCCGAT
1 GACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGATCTCGCACATCCAAGCACCTAGGTGCCAAT
* * *
44069744 GGTGCCCGACGCTTTCACACGACCAAGGGCCTAGGTAGCCGATGGTGCCCGAGGCTCCCCCAAGA
66 AGTGCCCGACGCTCTCACACAACCAAGGGCCTAGGTAGCCGATGGTGCCCGAGGCTCCCCCAAGA
** * * *
44069809 CCAAGGGCCTAGTTTGTCGATGGTGTCCAAGGCTCCCGCACATCCGAGTACCTAGGTGCCGATGG
131 CCAAGGGCCTAGTTTACCGATGGTGCCCAAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGG
44069874 TGCTCGAGACTCTCACATGACCGTAA
196 TGCTCGAGACTCTCACATGACCGTAA
44069900 GACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGATC-CTGCACATCCAAGCACCTAGGTGCCAA
1 GACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGATCTC-GCACATCCAAGCACCTAGGTGCCAA
* * ** * * * *
44069964 TAGTGCCTGAGGCTCTCACACAACCAAGGGCCTATTTTGCCGATGGTGCTCGAGGCTCCCGCACG
65 TAGTGCCCGACGCTCTCACACAACCAAGGGCCTAGGTAGCCGATGGTGCCCGAGGCTCCCCCAAG
*
44070029 ACCAAGGGCCTAG-TTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG
130 ACCAAGGGCCTAGTTTACCGATGGTGCCCAAGGCTCCCGCAC-ATCCAAGG
44070078 GTTTTGTTTG
Statistics
Matches: 153, Mismatches: 23, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
220 29 0.19
221 124 0.81
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (221 bp):
GACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGATCTCGCACATCCAAGCACCTAGGTGCCAAT
AGTGCCCGACGCTCTCACACAACCAAGGGCCTAGGTAGCCGATGGTGCCCGAGGCTCCCCCAAGA
CCAAGGGCCTAGTTTACCGATGGTGCCCAAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGG
TGCTCGAGACTCTCACATGACCGTAA
Found at i:44070286 original size:213 final size:212
Alignment explanation
Indices: 44070024--44070427 Score: 535
Period size: 213 Copynumber: 1.9 Consensus size: 212
44070014 CGAGGCTCCC
* * * * *
44070024 GCACGACCAAGGGCCTAGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGTTTTGTTTGC
1 GCACGACCAAGGACCTAGTTACCGATGGTCCCCGAGGCTCCCGCACGACCAAGAGCTTAGTTTGC
*
44070089 CGATGGTGTCTG-GCGCTCCCAAACATCCGA-GCGCCCAGGTCCCAATGGTGCCCGAGGCTCTCG
66 CGATGGTGTCCGAGC-CTCCCAAACAT-CGATGCGCCCAGGTCCCAATGGTGCCCGAGGCTCTCG
* *
44070152 CACGATCAAGGGCCTATGTGGCCGATGGTGTCCGA-GCTCCCGCACATCCAAGCCACCAAGGTGC
129 CACAACCAAGGGCCTATGTGGCCGATGGTGTCCGAGGCTCCCGCACATCCAAG-CACCAAGGTGC
44070216 CAGTGGTGCCCAAGGCTCTT
193 CAGTGGTGCCCAAGGCTCTT
* * * *
44070236 GCACGACCAAGGACCTAGTTTGCTGATGGTCCCCGAGGCTCTCGCACGACCAAGAGCTTAGTTTT
1 GCACGACCAAGGACCTAG-TTACCGATGGTCCCCGAGGCTCCCGCACGACCAAGAGCTTAGTTTG
** * * * * *
44070301 CCGATGGTGTCCGAGCCTCCCGCACATCTATGGGCCCAGGTGCCGATGGTGCCCGAGGCTCTCGT
65 CCGATGGTGTCCGAGCCTCCCAAACATCGATGCGCCCAGGTCCCAATGGTGCCCGAGGCTCTCGC
* * * * *
44070366 ACAACCACGGGCCTATGTTGCCTATGGTGTCCGAGGTTCTCGCACATCCAAGCACCAAGGTG
130 ACAACCAAGGGCCTATGTGGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTG
44070428 TCAATGATGC
Statistics
Matches: 164, Mismatches: 24, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
212 19 0.12
213 128 0.78
214 17 0.10
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.20
Consensus pattern (212 bp):
GCACGACCAAGGACCTAGTTACCGATGGTCCCCGAGGCTCCCGCACGACCAAGAGCTTAGTTTGC
CGATGGTGTCCGAGCCTCCCAAACATCGATGCGCCCAGGTCCCAATGGTGCCCGAGGCTCTCGCA
CAACCAAGGGCCTATGTGGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAG
TGGTGCCCAAGGCTCTT
Found at i:44070315 original size:43 final size:43
Alignment explanation
Indices: 44069900--44071018 Score: 561
Period size: 43 Copynumber: 26.3 Consensus size: 43
44069890 ATGACCGTAA
* * *
44069900 GACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGATCCTGCAC
1 GACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
** * * * * * *
44069943 -ATCCAAGCACCTAG-GTGCCAATAGTGCCTGAGGCTCTCACAC
1 GA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * *
44069985 AACCAAGGGCCTATTTTGCCGATGGTGCTCGAGGCTCCCGCAC
1 GACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
*
44070028 GACCAAGGGCCTAG-TTACCGATGGTGCCCGAGGCTCCCGCAC
1 GACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
** * * * **
44070070 GACCAAGGGTTTTGTTTGCCGATGGTGTCTG-GCGCTCCCAAAC
1 GACCAAGGGCCTAGTTTGCCGATGGTGCCCGAG-GCTCCCGCAC
* * * * * * *
44070113 -ATCCGAGCGCCCAG-GTCCCAATGGTGCCCGAGGCTCTCGCAC
1 GA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * *
44070155 GATCAAGGGCCTA-TGTGGCCGATGGTGTCCGA-GCTCCCGCAC
1 GACCAAGGGCCTAGT-TTGCCGATGGTGCCCGAGGCTCCCGCAC
** * * * **
44070197 -ATCCAAGCCACCAAG-GTGCC-AGTGGTGCCCAAGGCTCTTGCAC
1 GA-CCAAG-GGCCTAGTTTGCCGA-TGGTGCCCGAGGCTCCCGCAC
* * * *
44070240 GACCAAGGACCTAGTTTGCTGATGGTCCCCGAGGCTCTCGCAC
1 GACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * * *
44070283 GACCAAGAGCTTAGTTTTCCGATGGTGTCCGAGCCTCCCGCAC
1 GACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * * * *
44070326 -ATCTATGGGCCCAG-GTGCCGATGGTGCCCGAGGCTCTCGTAC
1 GA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * * * *
44070368 AACCACGGGCCTA-TGTTGCCTATGGTGTCCGAGGTTCTCGCAC
1 GACCAAGGGCCTAGT-TTGCCGATGGTGCCCGAGGCTCCCGCAC
** * * * * * * *
44070411 -ATCCAAGCACCAAG-GTGTCAATGATGCTCGAGGCTCCCGTAC
1 GA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * ** * * * *
44070453 GATCAAGGGCCTAGGTTGCCGACAGTGTCTGAGCCTCACGCAC
1 GACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* ** * * * ** **
44070496 -ATCATAGCACCGAG-CTGTCGATGGTGCCCGAAACTTTCGCAC
1 GACCA-AGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* ** * *
44070538 GACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTTCCGCAC
1 GACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* ** * *
44070581 -ATCATAGCACCGAG-TAGCCGATGGTGCCCGAGGCTCCCGCAC
1 GACCA-AGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * *** *
44070623 AACCAAGGGCCTAGTTTACCGATGGTGTTTGAGGCTCTCGCAC
1 GACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * * ** *
44070666 -ATCCGAGTGCCCAAG--TGCCGATGGTTCCCGAGGCTTTCACAC
1 GA-CCAAG-GGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * *
44070708 GACCAAGGGCCTTGGTAGCCGATGGTGCCCGAGGCTCCCGCAA
1 GACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * *
44070751 GACCAAGGGCCTAGTTTACCGATAGTGTCCGAGGCTCCCACAC
1 GACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * * * *
44070794 -ATCCGAGCGCCCAG-GTGCCGATGGTGCCTGAGGATCCCGCAC
1 GA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
** * *
44070836 GACCAAGGGCCTTA-TTTGTTGATAGTGTCCGAGGCTCCCGCAC
1 GACCAAGGGCC-TAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
** * * * *
44070879 -ATCCAAGCTCCTAG-GTGCCGATGGTTCCCGAGGATCCCGTAC
1 GA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * *
44070921 GACCAAGGGCCTTGGTTGCCGATGGTGTCCAAGGCTCCCGCAC
1 GACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
* ** * * *
44070964 -ATCCTAGCACCAAG-GTGCCGATGGTGCCTGAGGCTCCCGCAC
1 GA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
*
44071006 GACCAAGGACCTA
1 GACCAAGGGCCTA
44071019 TGCTACCGAA
Statistics
Matches: 775, Mismatches: 254, Indels: 95
0.69 0.23 0.08
Matches are distributed among these distances:
41 6 0.01
42 360 0.46
43 402 0.52
44 7 0.01
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (43 bp):
GACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC
Found at i:44070445 original size:383 final size:383
Alignment explanation
Indices: 44069623--44071018 Score: 1146
Period size: 383 Copynumber: 3.6 Consensus size: 383
44069613 CGGTGGTGCT
* * * * * * *
44069623 CGAGGCTCCCGGACAT-CATAGCACCAAGGTGCTGATGATGCCCTAGGCTCCCGAATGACCAAGG
1 CGAGGCTCCCGCACATCCA-AGCGCCAAGGTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGG
* * * * * * ** *
44069687 GCCTAGTTTGTCGATGGTGTCCGAG-GCTCTCGTACATCCAAGTGCCTAGGTGCCGATGGTGCCC
64 GCCTTGTTTGCCGATAGTGTCTGAGCGCTCCCGCACATCCAAGCACCCAGGTGCCGATGGTGCCC
* * * * * * * * *
44069751 GACGCTTTCACACGACCAAGGGCCTAGGTAGCCGATGGTGCCCGAGGCTCCCCCA-AGACCAAGG
129 GAGGCTCTCGCACGACCAAGGGCCTATGTTGCCGATGGTGTCCGAGGCTCCCGCACA-TCCAAGC
* * * * * * * * * * * *
44069815 GCCTAGTTTGTCGATGGTGTCCAAGGCTCCCGCAC-ATCCGAGTACCTAG-GTGCCGATGGTGCT
193 ACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGACCTAGTTTACCGATGGTCCC
* * * * *
44069878 CGAGACTCTCACATGACCGTAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGATCCTGCAC
256 CGAGGCTCT--C--G--C--ACGACCAAGAGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC
** * * * * *
44069943 ATCCAAGCACCTAGGTGCCAATAGTGCCTGAGGCTCTCACACAACCAAGGGCCTATTTTGCCGAT
313 ATCCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACAACCAAGGGCCTATGTTGCCGAT
44070008 GGTG-C
378 GGTGTC
* * * *
44070013 TCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAG
1 -CGAGGCTCCCGCAC-ATCCAAGCGCCAAGGTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAG
** * ** * * * *
44070077 GGTTTTGTTTGCCGATGGTGTCTG-GCGCTCCCAAACATCCGAGCGCCCAGGTCCCAATGGTGCC
63 GGCCTTGTTTGCCGATAGTGTCTGAGCGCTCCCGCACATCCAAGCACCCAGGTGCCGATGGTGCC
* *
44070141 CGAGGCTCTCGCACGATCAAGGGCCTATGTGGCCGATGGTGTCCGA-GCTCCCGCACATCCAAGC
128 CGAGGCTCTCGCACGACCAAGGGCCTATGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAG-
* ** * *
44070205 CACCAAGGTGCC-AGTGGTGCCCAAGGCTCTTGCACGACCAAGGACCTAGTTTGCTGATGGTCCC
192 CACCAAGGTGCCGA-TGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGTTTACCGATGGTCCC
* * * * *
44070269 CGAGGCTCTCGCACGACCAAGAGCTTAGTTTTCCGATGGTGTCCGAGCCTCCCGCACATCTATGG
256 CGAGGCTCTCGCACGACCAAGAGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGG
* * * *
44070334 GCCCAGGTGCCGATGGTGCCCGAGGCTCTCGTACAACCACGGGCCTATGTTGCCTATGGTGTC
321 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACAACCAAGGGCCTATGTTGCCGATGGTGTC
* * * * * * * *
44070397 CGAGGTTCTCGCACATCCAAGCACCAAGGTGTCAATGATGCTCGAGGCTCCCGTACGATCAAGGG
1 CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCCGATGGTGC-CGAGGCTCCCGCACGACCAAGGG
* * * * * * *
44070462 CCTAGGTTGCCGACAGTGTCTGAGC-CTCACGCACAT-CATAGCACCGAGCTGTCGATGGTGCCC
65 CCTTGTTTGCCGATAGTGTCTGAGCGCTCCCGCACATCCA-AGCACCCAGGTGCCGATGGTGCCC
** * * ** *
44070525 GAAACTTTCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTTCCGCACAT-CATAGC
129 GAGGCTCTCGCACGACCAAGGGCCTATGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCA-AGC
* * * ****
44070589 ACCGA-GTAGCCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGTTTACCGATGGTGTTT
193 ACCAAGGT-GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGTTTACCGATGGTCCCC
* * * ** *
44070653 GAGGCTCTCGCAC-ATCCGAGTGCCCAAG--TGCCGATGGT-TCCCGAGGCTTTCACACGA-CCA
257 GAGGCTCTCGCACGA-CCAAGAG-CCTAGTTTGCCGATGGTGT-CCGAGGCTCCCGCAC-ATCCA
* * * *
44070713 AGGGCCTTGGTAGCCGATGGTGCCCGAGGCTCCCGCA-AGACCAAGGGCCTA-GTTTACCGATAG
318 AGGGCCTAGGT-GCCGATGGTGCCCGAGGCTCTCGCACA-ACCAAGGGCCTATG-TTGCCGATGG
44070776 TGTC
380 TGTC
* * * *
44070780 CGAGGCTCCCACACATCCGAGCGCCCAGGTGCCGATGGTGCCTGAGGATCCCGCACGACCAAGGG
1 CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCCGATGGTGCC-GAGGCTCCCGCACGACCAAGGG
* ** * * * *
44070845 CCTTATTTGTTGATAGTGTCCGAG-GCTCCCGCACATCCAAGCTCCTAGGTGCCGATGGTTCCCG
65 CCTTGTTTGCCGATAGTGTCTGAGCGCTCCCGCACATCCAAGCACCCAGGTGCCGATGGTGCCCG
* * * * *
44070909 AGGATCCCGTACGACCAAGGGCCT-TGGTTGCCGATGGTGTCCAAGGCTCCCGCACATCCTAGCA
130 AGGCTCTCGCACGACCAAGGGCCTAT-GTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCA
*
44070973 CCAAGGTGCCGATGGTGCCTGAGGCTCCCGCACGACCAAGGACCTA
194 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTA
44071019 TGCTACCGAA
Statistics
Matches: 798, Mismatches: 177, Indels: 68
0.77 0.17 0.07
Matches are distributed among these distances:
381 1 0.00
382 39 0.05
383 522 0.65
384 25 0.03
385 1 0.00
387 1 0.00
389 2 0.00
390 45 0.06
391 159 0.20
392 3 0.00
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.20
Consensus pattern (383 bp):
CGAGGCTCCCGCACATCCAAGCGCCAAGGTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGC
CTTGTTTGCCGATAGTGTCTGAGCGCTCCCGCACATCCAAGCACCCAGGTGCCGATGGTGCCCGA
GGCTCTCGCACGACCAAGGGCCTATGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACC
AAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGTTTACCGATGGTCCCCGAGG
CTCTCGCACGACCAAGAGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGGGCCTA
GGTGCCGATGGTGCCCGAGGCTCTCGCACAACCAAGGGCCTATGTTGCCGATGGTGTC
Found at i:44070647 original size:298 final size:298
Alignment explanation
Indices: 44069945--44070649 Score: 651
Period size: 298 Copynumber: 2.4 Consensus size: 298
44069935 TCCTGCACAT
* * * * * * * * * * *
44069945 CCAAGCACCTAGG-TGCCAATAGTGCCTGAGGCTCTCACACAACCAAGGGCCTATTTTGCCGATG
1 CCAAGGACCTAGGTTGCCGACAGTCCCCGAGGCTCTCGCACGACCAAGAGCCGAGTTAGCCGATG
* * *
44070009 GTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGTTACCGATGGTGCCCGAGGCTCCCGCACGACC
66 GTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGTTACCGATGGTGCCCGAGGCTCCCGCACAACC
* * * * * * *
44070074 AAGGGTTTTGTTTGCCGATGGTGTCTGGCGCTCCCAAACATCCGAGCGCCCAGGTCCCAATGGTG
131 AAGGGCTATGTTTGCCGATGGTGTCCGGCGCTCCCAAACATCCAAGCACCAAGGTCCCAATGATG
* * ** *
44070139 CCCGAGGCTCTCGCACGATCAAGGGCCTATGTGGCCGATGGTGTCCGAGCTCCCGCACATCCAAG
196 CCCGAGGCTCCCGCACGATCAAGGGCCTAGGTGGCCGACAGTGTCCGAGCTCACGCACATCCAAG
* *
44070204 CCACCAAGGTGCCAGTGGTGCCCAAGGCTCTTGCACGA
261 CCACCAAGCTGCCAGTGGTGCCCAAGACTCTTGCACGA
* * ** ** **
44070242 CCAAGGACCTAGTTTGCTGATGGTCCCCGAGGCTCTCGCACGACCAAGAGCTTAGTTTTCCGATG
1 CCAAGGACCTAGGTTGCCGACAGTCCCCGAGGCTCTCGCACGACCAAGAGCCGAGTTAGCCGATG
* * * * * * * * * *
44070307 GTGTCCGAGCCTCCCGCACATCTATGGGCCCAGGTGCCGATGGTGCCCGAGGCTCTCGTACAACC
66 GTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGTTACCGATGGTGCCCGAGGCTCCCGCACAACC
* * * * ** **
44070372 ACGGGCCTATG-TTGCCTATGGTGTCCGAG-GTTCTCGCACATCCAAGCACCAAGGTGTCAATGA
131 AAGGG-CTATGTTTGCCGATGGTGTCCG-GCGCTCCCAAACATCCAAGCACCAAGGTCCCAATGA
* * * *
44070435 TGCTCGAGGCTCCCGTACGATCAAGGGCCTAGGTTGCCGACAGTGTCTGAGCCTCACGCACAT-C
194 TGCCCGAGGCTCCCGCACGATCAAGGGCCTAGGTGGCCGACAGTGTCCGAG-CTCACGCACATCC
* *
44070499 ATAG-CACCGAGCTGTC-GATGGTGCCCGAA-ACT-TTCGCACGA
258 A-AGCCACCAAGCTGCCAG-TGGTGCCC-AAGACTCTT-GCACGA
* ** *
44070540 CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCT-TCCGCAC-ATCATAGCA-CCGAG-TAGCCG
1 CCAAGGACCTAGGTTGCCGACAGTCCCCGAGGCTCT-CGCACGACCA-AG-AGCCGAGTTAGCCG
44070601 ATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGTTTACCGATGGTG
63 ATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAG-TTACCGATGGTG
44070650 TTTGAGGCTC
Statistics
Matches: 322, Mismatches: 74, Indels: 23
0.77 0.18 0.05
Matches are distributed among these distances:
297 52 0.16
298 251 0.78
299 19 0.06
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (298 bp):
CCAAGGACCTAGGTTGCCGACAGTCCCCGAGGCTCTCGCACGACCAAGAGCCGAGTTAGCCGATG
GTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGTTACCGATGGTGCCCGAGGCTCCCGCACAACC
AAGGGCTATGTTTGCCGATGGTGTCCGGCGCTCCCAAACATCCAAGCACCAAGGTCCCAATGATG
CCCGAGGCTCCCGCACGATCAAGGGCCTAGGTGGCCGACAGTGTCCGAGCTCACGCACATCCAAG
CCACCAAGCTGCCAGTGGTGCCCAAGACTCTTGCACGA
Found at i:44070818 original size:213 final size:213
Alignment explanation
Indices: 44070514--44070962 Score: 535
Period size: 213 Copynumber: 2.1 Consensus size: 213
44070504 ACCGAGCTGT
** ** * * * *
44070514 CGATGGTGCCCGAAACTTTCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTTCCGC
1 CGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGGTTACCGACAGTGTCCGAGGCTCCCAC
* * *
44070579 ACATCATAGCACCGAGTAGCCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCC-TAGTTTACC
66 ACATCAGAGCACCCAGTAGCCGATGGTGCCCGAGGATCCCGCACAACCAAGGGCCTTA-TTTACC
* ** * * * **
44070643 GATGGTGTTTGAGGCTCTCGCACATCCGAG-TGCCCAAGTGCCGATGGTTCCCGAGGCTTTCACA
130 GATAGTGTCCGAGGCTCCCGCACATCCAAGCT-CCCAAGTGCCGATGGTTCCCGAGGATCCCACA
44070707 CGACCAAGGGCCTTGGTAGC
194 CGACCAAGGGCCTTGGTAGC
* *
44070727 CGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTACCGATAGTGTCCGAGGCTCCCAC
1 CGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGGTTACCGACAGTGTCCGAGGCTCCCAC
* * * * ***
44070792 ACATCCGAGCGCCCAGGT-GCCGATGGTGCCTGAGGATCCCGCACGACCAAGGGCCTTATTTGTT
66 ACATCAGAGCACCCA-GTAGCCGATGGTGCCCGAGGATCCCGCACAACCAAGGGCCTTATTTACC
* * **
44070856 GATAGTGTCCGAGGCTCCCGCACATCCAAGCTCCTAGGTGCCGATGGTTCCCGAGGATCCCGTAC
130 GATAGTGTCCGAGGCTCCCGCACATCCAAGCTCCCAAGTGCCGATGGTTCCCGAGGATCCCACAC
*
44070921 GACCAAGGGCCTTGGTTGC
195 GACCAAGGGCCTTGGTAGC
* *
44070940 CGATGGTGTCCAAGGCTCCCGCA
1 CGATGGTGCCCGAGGCTCCCGCA
44070963 CATCCTAGCA
Statistics
Matches: 198, Mismatches: 35, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
213 193 0.97
214 5 0.03
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.19
Consensus pattern (213 bp):
CGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGGTTACCGACAGTGTCCGAGGCTCCCAC
ACATCAGAGCACCCAGTAGCCGATGGTGCCCGAGGATCCCGCACAACCAAGGGCCTTATTTACCG
ATAGTGTCCGAGGCTCCCGCACATCCAAGCTCCCAAGTGCCGATGGTTCCCGAGGATCCCACACG
ACCAAGGGCCTTGGTAGC
Found at i:44075866 original size:43 final size:43
Alignment explanation
Indices: 44075756--44075916 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
44075746 CCAAGCTGCT
* * ** * * **
44075756 GATGGTGCTTGAAGCTCTTGCACGACCAATGGTCTATTTTACC
1 GATGGTGCCTGAGGCTCACGCACGACCAAGGGCCTAGGTTACC
* * **
44075799 GATGGTGTCTGAGGTTTTCGCACGACCAAGGGCCTAGGTTACC
1 GATGGTGCCTGAGGCTCACGCACGACCAAGGGCCTAGGTTACC
* * * *
44075842 GATGGTGCCTGAGGCTCCCACACGACCAGGGGCCTAGGTTGCC
1 GATGGTGCCTGAGGCTCACGCACGACCAAGGGCCTAGGTTACC
*
44075885 GATGGTGCCCGAGGCTCACGCACGACCAAGGG
1 GATGGTGCCTGAGGCTCACGCACGACCAAGGG
44075917 GAGGGACTGG
Statistics
Matches: 97, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 97 1.00
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (43 bp):
GATGGTGCCTGAGGCTCACGCACGACCAAGGGCCTAGGTTACC
Found at i:44076037 original size:75 final size:75
Alignment explanation
Indices: 44075914--44076074 Score: 236
Period size: 75 Copynumber: 2.1 Consensus size: 75
44075904 GCACGACCAA
* **
44075914 GGGGAGGGACTGGGATGATTCATTCATTGTTGGGTATGTCACATGTAACGATATAT-AAATTCTA
1 GGGGAGGGACTGGGACGATTCATTCATTGTTGGGTACATCACATGTAACGATAT-TCAAATTCTA
44075978 CCTTTGGGATT
65 CCTTTGGGATT
*
44075989 GGGGAGGGAGC-GGGACGATTCGTTCATTGTTGGGTACATCACATGTAACGATATTCAAATTCTA
1 GGGGAGGGA-CTGGGACGATTCATTCATTGTTGGGTACATCACATGTAACGATATTCAAATTCTA
44076053 CCTTTGGGATT
65 CCTTTGGGATT
* *
44076064 AGAGAGGGACT
1 GGGGAGGGACT
44076075 CGTTGCATCG
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
74 2 0.03
75 74 0.96
76 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.31
Consensus pattern (75 bp):
GGGGAGGGACTGGGACGATTCATTCATTGTTGGGTACATCACATGTAACGATATTCAAATTCTAC
CTTTGGGATT
Found at i:44084402 original size:35 final size:36
Alignment explanation
Indices: 44084362--44084433 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
44084352 TCTAGGATCA
*
44084362 CATATCTGCA-AAGATCACCTTCCATATTTGCGAAG
1 CATATCTGCAGAAGATCACCTTCCATATTTGCCAAG
* * *
44084397 CATATCTTCAGAAGATCACTTTCCTTATTTGCCAAG
1 CATATCTGCAGAAGATCACCTTCCATATTTGCCAAG
44084433 C
1 C
44084434 TCCGGAGATG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 9 0.28
36 23 0.72
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (36 bp):
CATATCTGCAGAAGATCACCTTCCATATTTGCCAAG
Found at i:44089537 original size:36 final size:35
Alignment explanation
Indices: 44089488--44089557 Score: 95
Period size: 36 Copynumber: 2.0 Consensus size: 35
44089478 TCTAGGATCA
*
44089488 CATATCTTCGAAGATCACCTTCCATATCTGCCAAG
1 CATATCTTAGAAGATCACCTTCCATATCTGCCAAG
* * *
44089523 CATATCTTTAGAAGATCACTTTCCTTATTTGCCAA
1 CATATC-TTAGAAGATCACCTTCCATATCTGCCAA
44089558 TCCTTTTCCC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 6 0.20
36 24 0.80
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.34
Consensus pattern (35 bp):
CATATCTTAGAAGATCACCTTCCATATCTGCCAAG
Found at i:44095100 original size:29 final size:29
Alignment explanation
Indices: 44095055--44095111 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
44095045 CAACGGTGCT
*
44095055 TTCGAACCAATAACTCAGATATCACTTGG
1 TTCGAACCAATAACTCAGATACCACTTGG
*
44095084 TTCGAACCAATAGCTCAGATACCACTTG
1 TTCGAACCAATAACTCAGATACCACTTG
44095112 TCACAGGGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.26
Consensus pattern (29 bp):
TTCGAACCAATAACTCAGATACCACTTGG
Found at i:44098023 original size:128 final size:127
Alignment explanation
Indices: 44097882--44099028 Score: 690
Period size: 128 Copynumber: 9.0 Consensus size: 127
44097872 AGGCTCTCGT
*
44097882 ACGACCAAGGGCCTCGTTTTCCAATGGTGTCCGAGGCTCCCGCACATCCGAGAACCCAGGTGCCG
1 ACGACCAAGGGCCTAGTTTTCCAATGGTGTCCGAGGCTCCCGCACATCCGAGAACCCAGGTGCCG
* * * * * *
44097947 ATGGTGCCCGATGCTTTTGCACGACCAAGGGCCTAGGTAGCCGACGGTGCTTGAGGCTCCCCC
66 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTA-CCGATGGTGCTCGAGGCTCCCAC
* * *** * * **
44098010 AAGACCAATGGCCTAGTTTTTTGATGGTGTCCGAGGCTCCTGCACATCCGAGCACCTTGGTGCCG
1 ACGACCAAGGGCCTAGTTTTCCAATGGTGTCCGAGGCTCCCGCACATCCGAGAACCCAGGTGCCG
* * * * * *
44098075 ATGGTGCTCGAGGCTCTCGCATGACTAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTTCCGC
66 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGG-TACCGATGGTGCTCGAGGCTCCCAC
* * * * * * *
44098138 ACGACCAAGGGCCTAGTTTGCCGATAGTGTCCGAGGCTCTCGCACATCCAAGCAA-CTAGGTGTC
1 ACGACCAAGGGCCTAGTTTTCCAATGGTGTCCGAGGCTCCCGCACATCCGAG-AACCCAGGTGCC
** *
44098202 GATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTATTTTACCGATGATGCTCGAGGCTCCCAC
65 GATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTA-GGTACCGATGGTGCTCGAGGCTCCCAC
** * * **
44098266 ACGACCAAGGGTTTAG-TTTCTAGATGGTGTCCGGGGCTCCCGCACATCCGAGCGCCCAGGTGCC
1 ACGACCAAGGGCCTAGTTTTCCA-ATGGTGTCCGAGGCTCCCGCACATCCGAGAACCCAGGTGCC
* * * ** * ** *
44098330 GATGGTGCCCGAAGCTCTCGCACGACAAAAGTACTATGTTGTCGATGGTG-TCCGAGGTTCCCAC
65 GATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTA-GGTACCGATGGTGCT-CGAGGCTCCCAC
** * * * ** * * ** *
44098394 AC-ATCCAAGCACCCAGGTGT-CGGTGGTG-CTCGAGGCT-CCGCA-AGACCAAGGGCCTAGGTT
1 ACGA-CCAAGGGCCTAGTTTTCCAATGGTGTC-CGAGGCTCCCGCACA-TCCGAGAACCCAGG-T
* ** * * ** * * *
44098454 GCTGAAT-GTGTTCGAGGCTCCCGCAC-ATCATA-GTACTGAGGTATCGCTGGTGCCCGAGGCTC
62 GCCG-ATGGTGCCCGAGGCTCTCGCACGACCA-AGGGCCT-AGGTACCGATGGTGCTCGAGGCTC
**
44098516 CTGC
124 CCAC
* * * * * ** * *
44098520 ACTACCAAGGGCCTAGTTTACCGATGGTGTCCGAGGCTCCTGCACGA-CCAAGGGCCTAGGTTAC
1 ACGACCAAGGGCCTAGTTTTCCAATGGTGTCCGAGGCTCCCGCAC-ATCCGAGAACCCAGG-TGC
** * * * ** * ** * **
44098584 CGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCACCAAGGTGTCGATGGTGCCCGAGGCTCCTGC
64 CGATGGTGCCCGAGGCTCTCGCACGACCA-AGGGCCTAGGTACCGATGGTGCTCGAGGCTCCCAC
* * ** **
44098648 ACGACCAAGAGCCTAGTTTGCTGATGGTGTCCGAGGCTCCCGC-CTATCCGAGTGCCCAGGTGCC
1 ACGACCAAGGGCCTAGTTTTCCAATGGTGTCCGAGGCTCCCGCAC-ATCCGAGAACCCAGGTGCC
* * * * *
44098712 -AGTGGTGCCTGAGGCTTTCACACGACCAAGGGCATAGGTAGCCGATGGTGC-CTGAGGCTCCCG
65 GA-TGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTA-CCGATGGTGCTC-GAGGCTCCCA
44098775 C
127 C
* * * * * * ** * *** * *
44098776 AAGAACAAGGACTTAGTTTGCCGATGGTGTCTAAAGCTCCCGCACATCCGAGCGTCCAAGTGCTG
1 ACGACCAAGGGCCTAGTTTTCCAATGGTGTCCGAGGCTCCCGCACATCCGAGAACCCAGGTGCCG
* * * ** * * * *
44098841 ATGGTGCCCGAGGCTTTCGCACGACCAAGTGCCTAGGTTGCTAATGGTCCCCGAGGGTCCCGC
66 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGG-TACCGATGGTGCTCGAGGCTCCCAC
* * * * * * * * *
44098904 ACGACCAAGGGCCTAGTCTGCCGATTGTGTTCGAGGCTCTCGCACATCCAAGCACCTAGGTGCCG
1 ACGACCAAGGGCCTAGTTTTCCAATGGTGTCCGAGGCTCCCGCACATCCGAGAACCCAGGTGCCG
* * * * *
44098969 ATGGTTCCCGAGGATCTCACACGACCAAGGGCCTAGGTTGCCTATGGTG-TCTGAGGCTCC
66 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGG-TACCGATGGTGCTC-GAGGCTCC
44099029 TGCACATCCT
Statistics
Matches: 801, Mismatches: 185, Indels: 66
0.76 0.18 0.06
Matches are distributed among these distances:
125 1 0.00
126 55 0.07
127 81 0.10
128 653 0.82
129 10 0.01
130 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (127 bp):
ACGACCAAGGGCCTAGTTTTCCAATGGTGTCCGAGGCTCCCGCACATCCGAGAACCCAGGTGCCG
ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTACCGATGGTGCTCGAGGCTCCCAC
Found at i:44098108 original size:85 final size:85
Alignment explanation
Indices: 44097616--44098564 Score: 396
Period size: 85 Copynumber: 11.2 Consensus size: 85
44097606 CGATGCTGCT
* * * * * * * *
44097616 CGAGGCTCCCGCATATTCGAGCCACCAAGGTGCCGATGGTGC-CTAAGGCTCCCGTACGACCAAG
1 CGAGGCTCCCGCACATCCAAG-CACCTAGGTGCCGATGGTGCTC-GAGGCTCTCGCAAGACCAAG
* *
44097680 GTCTTAGTTTGTCGATGGTGTC
64 GGCCTAGTTTGTCGATGGTGTC
* * * * * *
44097702 TGAGGCTCCTGCATATCCGAGCACCCAGGTGCCGATGGTGCCCGAGGCTCTCG-AACGACCAAGG
1 CGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCTCGAGGCTCTCGCAA-GACCAAGG
* *
44097766 GCCTAGGTTG-CTGATGCTGTC
65 GCCTAGTTTGTC-GATGGTGTC
* * * ** * * * * *
44097787 CGAGGTTCTCGCACATCCAA-CACCAAGGTGTTGGTGGTGCTCGAGGCTCCCGCACATAAC-AGC
1 CGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCTCGAGGCTCTCGCA-AGACCAAGG
* * * * * *
44097850 ACCGAG-GTGCCGATTGTATC
65 GCCTAGTTTGTCGATGGTGTC
* * ** * * * * * * *
44097870 CGAGGCTCTCGTACGA-CCAAGGGCCTCGTTTTCCAATGGTG-TCCGAGGCTCCCGCACA-TCCG
1 CGAGGCTCCCGCAC-ATCCAAGCACCTAG-GTGCCGATGGTGCT-CGAGGCTCTCGCA-AGACCA
** * * * *
44097932 AGAACCCAG-GTGCCGATGGTGCC
62 AGGGCCTAGTTTGTCGATGGTGTC
* *** ** * * * * *
44097955 CGATGCTTTTGCACGA-CCAAGGGCCTAGGTAGCCGACGGTGCTTGAGGCTCCCCCAAGACCAAT
1 CGAGGCTCCCGCAC-ATCCAAGCACCTAGGT-GCCGATGGTGCTCGAGGCTCTCGCAAGACCAAG
* *
44098019 GGCCTAGTTTTTTGATGGTGTC
64 GGCCTAGTTTGTCGATGGTGTC
* * * * *
44098041 CGAGGCTCCTGCACATCCGAGCACCTTGGTGCCGATGGTGCTCGAGGCTCTCGCATGACTAAGGG
1 CGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCTCGAGGCTCTCGCAAGACCAAGGG
* ** *
44098106 CCTAGGTTACCGATGGTGCC
66 CCTAGTTTGTCGATGGTGTC
* ** * * *
44098126 CGAGGCTTCCGCACGA-CCAAGGGCCTAGTTTGCCGATAGTG-TCCGAGGCTCTCGCACA-TCCA
1 CGAGGCTCCCGCAC-ATCCAAGCACCTAG-GTGCCGATGGTGCT-CGAGGCTCTCGCA-AGACCA
*** * *
44098188 AGCAACTAG-GTGTCGATGGTGCC
62 AGGGCCTAGTTTGTCGATGGTGTC
* ** ** * * * * *
44098211 CGAGGCTCTCGCACGA-CCAAGGGCCTATTTTACCGATGATGCTCGAGGCTCCCACACGACCAAG
1 CGAGGCTCCCGCAC-ATCCAAGCACCTA-GGTGCCGATGGTGCTCGAGGCTCTCGCAAGACCAAG
** * *
44098275 GGTTTAGTTTCTAGATGGTGTC
64 GGCCTAGTTTGTCGATGGTGTC
* * * * * * * * * *
44098297 CGGGGCTCCCGCACATCCGAGCGCCCAGGTGCCGATGGTGCCCGAAGCTCTCGCACGACAAAAGT
1 CGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCTCGAGGCTCTCGCAAGACCAAGGG
*
44098362 ACTA-TGTTGTCGATGGTGTC
66 CCTAGT-TTGTCGATGGTGTC
* * * * *
44098382 CGAGGTTCCCACACATCCAAGCACCCAGGTGTCGGTGGTGCTCGAGGCTC-CGCAAGACCAAGGG
1 CGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCTCGAGGCTCTCGCAAGACCAAGGG
* *
44098446 CCTAGGTTG-CTGAAT-GTGTT
66 CCTAGTTTGTC-G-ATGGTGTC
* ** * * **
44098466 CGAGGCTCCCGCACAT-CATAGTA-CTGAGGTATCGCTGGTGCCCGAGGCTC-CTGCACTACCAA
1 CGAGGCTCCCGCACATCCA-AGCACCT-AGGTGCCGATGGTGCTCGAGGCTCTC-GCAAGACCAA
**
44098528 GGGCCTAGTTTACCGATGGTGTC
63 GGGCCTAGTTTGTCGATGGTGTC
*
44098551 CGAGGCTCCTGCAC
1 CGAGGCTCCCGCAC
44098565 GACCAAGGGC
Statistics
Matches: 653, Mismatches: 176, Indels: 69
0.73 0.20 0.08
Matches are distributed among these distances:
83 28 0.04
84 106 0.16
85 404 0.62
86 115 0.18
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (85 bp):
CGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCTCGAGGCTCTCGCAAGACCAAGGG
CCTAGTTTGTCGATGGTGTC
Found at i:44098219 original size:42 final size:41
Alignment explanation
Indices: 44097470--44099082 Score: 429
Period size: 43 Copynumber: 37.9 Consensus size: 41
44097460 ATTCAATCGG
* * * *
44097470 TAGGTGCCAATGGTGCTCGAGGCTCCCGCTCATCCAAGCACC
1 TAGGTGCCGATGGTGCCCGAGGCTCTCGCACA-CCAAGCACC
* * * * * *
44097512 ATAGTTGCCGATGCTGCTCGAGGCTC-CTGCCCATCCGATCACC
1 -TAGGTGCCGATGGTGCCCGAGGCTCTC-GCACA-CCAAGCACC
* * * **
44097555 AAGGTTGCCGATGGTGTCTGAGGCT-TCCGCACATCTGAGCCACC
1 TAGG-TGCCGATGGTGCCCGAGGCTCT-CGCACA-CCAAG-CACC
* * * * * * *
44097599 AAGGTGCCGATGCTGCTCGAGGCTCCCGCATATTCGAGCCACC
1 TAGGTGCCGATGGTGCCCGAGGCTCTCGCACA-CCAAG-CACC
* ** * * ** *
44097642 AAGGTGCCGATGGTGCCTAAGGCTCCCGTACGACCAAGGTCT
1 TAGGTGCCGATGGTGCCCGAGGCTCTCGCAC-ACCAAGCACC
* * * * * *
44097684 TAGTTTGTCGATGGTGTCTGAGGCTC-CTGCATATCCGAGCACC
1 TAG-GTGCCGATGGTGCCCGAGGCTCTC-GCACA-CCAAGCACC
* * **
44097727 CAGGTGCCGATGGTGCCCGAGGCTCTCGAACGACCAAGGGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCTCGCAC-ACCAAGCACC
* * * *
44097769 TAGGTTGCTGATGCTGTCCGAGGTTCTCGCACATCCAA-CACC
1 TAGG-TGCCGATGGTGCCCGAGGCTCTCGCACA-CCAAGCACC
* ** * * * **
44097811 AAGGTGTTGGTGGTGCTCGAGGCTCCCGCACATAACAGCACC
1 TAGGTGCCGATGGTGCCCGAGGCTCTCGCACACCA-AGCACC
* * ** * **
44097853 GAGGTGCCGATTGTATCCGAGGCTCTCGTACGACCAAGGGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCTCGCAC-ACCAAGCACC
* * * * * * * *
44097895 TCGTTTTCCAATGGTGTCCGAGGCTCCCGCACATCCGAGAACC
1 TAG-GTGCCGATGGTGCCCGAGGCTCTCGCACA-CCAAGCACC
* * * * **
44097938 CAGGTGCCGATGGTGCCCGATGCTTTTGCACGACCAAGGGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCTCGCAC-ACCAAGCACC
* ** * * * *
44097980 TAGGTAGCCGACGGTGCTTGAGGCTCCCCCAAGACCAATG-GCC
1 TAGGT-GCCGATGGTGCCCGAGGCTCTCGC-ACACCAA-GCACC
* *** * *
44098023 TAGTTTTTTGATGGTGTCCGAGGCTC-CTGCACATCCGAGCACC
1 TAG-GTGCCGATGGTGCCCGAGGCTCTC-GCACA-CCAAGCACC
* * * * **
44098066 TTGGTGCCGATGGTGCTCGAGGCTCTCGCATGACTAAGGGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCTCGCA-CACCAAGCACC
* **
44098108 TAGGTTACCGATGGTGCCCGAGGCT-TCCGCACGACCAAGGGCC
1 TAGG-TGCCGATGGTGCCCGAGGCTCT-CGCAC-ACCAAGCACC
* * * *
44098151 TAGTTTGCCGATAGTGTCCGAGGCTCTCGCACATCCAAGCAAC
1 TAG-GTGCCGATGGTGCCCGAGGCTCTCGCACA-CCAAGCACC
* **
44098194 TAGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCTCGCAC-ACCAAGCACC
** * * * * * ****
44098236 TATTTTACCGATGATGCTCGAGGCTCCCACACGACCAAGGGTT
1 TA-GGTGCCGATGGTGCCCGAGGCTCTCGCAC-ACCAAGCACC
* * * * * * * *
44098279 TAGTTTCTAGATGGTGTCCGGGGCTCCCGCACATCCGAGCGCC
1 TAGGTGC-CGATGGTGCCCGAGGCTCTCGCACA-CCAAGCACC
* * * *
44098322 CAGGTGCCGATGGTGCCCGAAGCTCTCGCACGACAAAAGTA-C
1 TAGGTGCCGATGGTGCCCGAGGCTCTCGCAC-AC-CAAGCACC
* * * * * *
44098364 TATGTTGTCGATGGTGTCCGAGGTTCCCACACATCCAAGCACC
1 TA-GGTGCCGATGGTGCCCGAGGCTCTCGCACA-CCAAGCACC
* * * * * **
44098407 CAGGTGTCGGTGGTGCTCGAGGCTC-CGCAAGACCAAGGGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCTCGC-ACACCAAGCACC
* ** * * *
44098448 TAGGTTGCTGAAT-GTGTTCGAGGCTCCCGCACATCATAGTA-C
1 TAGG-TGCCG-ATGGTGCCCGAGGCTCTCGCACACCA-AGCACC
** * **
44098490 TGAGGTATCGCTGGTGCCCGAGGCTC-CTGCACTACCAAGGGCC
1 T-AGGTGCCGATGGTGCCCGAGGCTCTC-GCAC-ACCAAGCACC
* * * **
44098533 TAGTTTACCGATGGTGTCCGAGGCTC-CTGCACGACCAAGGGCC
1 TAG-GTGCCGATGGTGCCCGAGGCTCTC-GCAC-ACCAAGCACC
* ** * * *
44098576 TAGGTTACCGACAGTGTCCGAGGCTCCCGCACATCATAGCACC
1 TAGG-TGCCGATGGTGCCCGAGGCTCTCGCACACCA-AGCACC
* *
44098619 AAGGTGTCGATGGTGCCCGAGGCTC-CTGCACGACCAAG-AGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCTC-GCAC-ACCAAGCA-CC
* * * * * **
44098661 TAGTTTGCTGATGGTGTCCGAGGCTCCCGC-CTATCCGAGTGCC
1 TAG-GTGCCGATGGTGCCCGAGGCTCTCGCAC-A-CCAAGCACC
* * * * ** *
44098704 CAGGTGCC-AGTGGTGCCTGAGGCTTTCACACGACCAAGGGCA
1 TAGGTGCCGA-TGGTGCCCGAGGCTCTCGCAC-ACCAAGCACC
* * * * * *
44098746 TAGGTAGCCGATGGTGCCTGAGGCTCCCGCAAGAACAAGGACT
1 TAGGT-GCCGATGGTGCCCGAGGCTCTCGC-ACACCAAGCACC
* * ** * * * *
44098789 TAGTTTGCCGATGGTGTCTAAAGCTCCCGCACATCCGAGCGTCC
1 TAG-GTGCCGATGGTGCCCGAGGCTCTCGCACA-CCAAGC-ACC
* * * **
44098833 -AAGTGCTGATGGTGCCCGAGGCTTTCGCACGACCAAGTGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCTCGCAC-ACCAAGCACC
** * * * **
44098874 TAGGTTGCTAATGGTCCCCGAGGGTCCCGCACGACCAAGGGCC
1 TAGG-TGCCGATGGTGCCCGAGGCTCTCGCAC-ACCAAGCACC
* * **
44098917 TAGTCTGCCGATTGTGTTCGAGGCTCTCGCACATCCAAGCACC
1 TAG-GTGCCGATGGTGCCCGAGGCTCTCGCACA-CCAAGCACC
* * * **
44098960 TAGGTGCCGATGGTTCCCGAGGATCTCACACGACCAAGGGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCTCGCAC-ACCAAGCACC
* * * *
44099002 TAGGTTGCCTATGGTGTCTGAGGCTC-CTGCACATCCTAGCACC
1 TAGG-TGCCGATGGTGCCCGAGGCTCTC-GCACA-CCAAGCACC
* * *
44099045 AAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAG
1 TAGGTGCCGATGGTGCCCGAGGCTCTCGCAC-ACCAAG
44099083 GGACTATGTT
Statistics
Matches: 1139, Mismatches: 347, Indels: 169
0.69 0.21 0.10
Matches are distributed among these distances:
40 1 0.00
41 41 0.04
42 408 0.36
43 669 0.59
44 20 0.02
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (41 bp):
TAGGTGCCGATGGTGCCCGAGGCTCTCGCACACCAAGCACC
Found at i:44098260 original size:213 final size:210
Alignment explanation
Indices: 44098012--44099094 Score: 852
Period size: 213 Copynumber: 5.1 Consensus size: 210
44098002 GCTCCCCCAA
* * ** * * ** *
44098012 GACCAATGGCCTAGTTTTTTGATGGTG-TCCGAGGCTCCTGCAC-ATCCGAGCACCTTGGTGCCG
1 GACCAAGGGCCTAGGTTGCTGATGGTGCT-CGAGGCTCCCGCACGATCCAAGTGCCTAGGTGCCG
* *
44098075 ATGGTGCTCGAGGCTCTCGCATGACTAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTTCCGCAC
65 ATGGTGCTCGAGGCTCTCGCA-CACCAAGGGCCTAGG-TACCGATGGTGCCCGAGGC-TCCGCAC
* * * *
44098140 GACCAAGGGCCTAGTTTGCCGATAGTGTCCGAGGCTCTCGCACATCCAAGCAACTAGGTGTCGAT
127 GACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGAT
44098205 GGTGCCCGAGGCTCTCGCAC
192 GGTGCCCGAGGCTC-CGCAC
** * * * * * ** * * *
44098225 GACCAAGGGCCTATTTTACCGATGATGCTCGAGGCTCCCACACGA-CCAAGGGTTTAGTTTCTAG
1 GACCAAGGGCCTAGGTTGCTGATGGTGCTCGAGGCTCCCGCACGATCCAAGTGCCTAGGTGC-CG
* * * * * * *
44098289 ATGGTG-TCCGGGGCTCCCGCACATCCGAGCGCCCAGGTGCCGATGGTGCCCGAAGCTCTCGCAC
65 ATGGTGCT-CGAGGCTCTCGCACA-CCAAGGGCCTAGGTACCGATGGTGCCCGAGGCTC-CGCAC
* * ** * * * * *
44098353 GACAAAAGTACTA-TGTTGTCGATGGTGTCCGAGGTTCCCACACATCCAAGCACCCAGGTGTCGG
127 GACCAAGGGCCTAGT-TTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGA
* *
44098417 TGGTGCTCGAGGCTCCGCAA
191 TGGTGCCCGAGGCTCCGCAC
* * **
44098437 GACCAAGGGCCTAGGTTGCTGAAT-GTGTTCGAGGCTCCCGCAC-AT-CATAGT-ACTGAGGTAT
1 GACCAAGGGCCTAGGTTGCTG-ATGGTGCTCGAGGCTCCCGCACGATCCA-AGTGCCT-AGGTGC
* * * *
44098498 CGCTGGTGCCCGAGGCTC-CTGCACTACCAAGGGCCTAGTTTACCGATGGTGTCCGAGGCTCCTG
63 CGATGGTGCTCGAGGCTCTC-GCAC-ACCAAGGGCCTAG-GTACCGATGGTGCCCGAGGCTCC-G
* * **
44098562 CACGACCAAGGGCCTAGGTTACCGACAGTGTCCGAGGCTCCCGCACAT-CATAGCACCAAGGTGT
124 CACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCA-AGCACCAAGGTGT
44098626 CGATGGTGCCCGAGGCTCCTGCAC
188 CGATGGTGCCCGAGGCTCC-GCAC
* * * * *
44098650 GACCAAGAGCCTAGTTTGCTGATGGTG-TCCGAGGCTCCCGC-CTATCCGAGTGCCCAGGTGCC-
1 GACCAAGGGCCTAGGTTGCTGATGGTGCT-CGAGGCTCCCGCACGATCCAAGTGCCTAGGTGCCG
* * * *
44098712 AGTGGTGC-CTGAGGCTTTCACACGACCAAGGGCATAGGTAGCCGATGGTGCCTGAGGCTCCCGC
65 A-TGGTGCTC-GAGGCTCTCGCAC-ACCAAGGGCCTAGGTA-CCGATGGTGCCCGAGGCT-CCGC
* * * * ** * * *
44098776 AAGAACAAGGACTTAGTTTGCCGATGGTGTCTAAAGCTCCCGCACATCCGAGCGTCCAA-GTG-C
125 ACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC-ACCAAGGTGTC
*
44098839 TGATGGTGCCCGAGGCTTTCGCAC
189 -GATGGTGCCCGAGGC-TCCGCAC
* * * * * * *
44098863 GACCAAGTGCCTAGGTTGCTAATGGTCCCCGAGGGTCCCGCACGA-CCAAGGGCCTAGTCTGCCG
1 GACCAAGGGCCTAGGTTGCTGATGGTGCTCGAGGCTCCCGCACGATCCAAGTGCCTAG-GTGCCG
* * ** * * * *
44098927 ATTGTGTTCGAGGCTCTCGCACATCCAAGCACCTAGGTGCCGATGGTTCCCGAGGATCTCACACG
65 ATGGTGCTCGAGGCTCTCGCACA-CCAAGGGCCTAGGTACCGATGGTGCCCGAGGCTC-CGCACG
* * * * * * *
44098992 ACCAAGGGCCTAGGTTGCCTATGGTGTCTGAGGCTCCTGCACATCCTAGCACCAAGGTGCCGGTG
128 ACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGATG
44099057 GTGCCCGAGGCTCCCGCAC
193 GTGCCCGAGGCT-CCGCAC
* *
44099076 GACCAAGGGACTATGTTGC
1 GACCAAGGGCCTAGGTTGC
44099095 CAGAATGGCT
Statistics
Matches: 680, Mismatches: 147, Indels: 86
0.74 0.16 0.09
Matches are distributed among these distances:
210 1 0.00
211 33 0.05
212 144 0.21
213 426 0.63
214 74 0.11
215 2 0.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (210 bp):
GACCAAGGGCCTAGGTTGCTGATGGTGCTCGAGGCTCCCGCACGATCCAAGTGCCTAGGTGCCGA
TGGTGCTCGAGGCTCTCGCACACCAAGGGCCTAGGTACCGATGGTGCCCGAGGCTCCGCACGACC
AAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGATGGTG
CCCGAGGCTCCGCAC
Found at i:44098676 original size:297 final size:298
Alignment explanation
Indices: 44098119--44098776 Score: 730
Period size: 297 Copynumber: 2.2 Consensus size: 298
44098109 AGGTTACCGA
* * *
44098119 TGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCCGAGGCTCTCGCACA
1 TGGTGCCCGAGGCTTCCGCAAGACCAAGGGCCTAGGTTGCCGATAGTGTCCGAGGCTCCCGCACA
* *
44098184 TCCAAGCAACTAGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTATTTTACCGATG
66 TCCAAGCAACTAGGTATCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTACCGATG
** * ** *
44098249 ATGCTCGAGGCTCCCACACGACCAAGGGTTTAGTTTCTAGATGGTGTCCGGGGCTCCCGCACATC
131 ATGCTCGAGGCTCCCACACGACCAAGGGCCTAGTTACTAGACAGTGTCCGAGGCTCCCGCACATC
* * *
44098314 CGAGCGCCCAGGTGCCGATGGTGCCCGAAGCTCTCGCACGACAAAAGTACTATGTTGTCGATGGT
196 AGAGCACCAAGGTGCCGATGGTGCCCGAAGCTCTCGCACGACAAAAGTACTATGTTGTCGATGGT
*
44098379 GTCCGAGGTTCCCACACATCCAAGCACCCAGGTGTCGG
261 GTCCGAGGCTCCCACACATCCAAGCACCCAGGTGTCGG
* * *
44098417 TGGTGCTCGAGGC-TCCGCAAGACCAAGGGCCTAGGTTGCTGA-ATGTGTTCGAGGCTCCCGCAC
1 TGGTGCCCGAGGCTTCCGCAAGACCAAGGGCCTAGGTTGCCGATA-GTGTCCGAGGCTCCCGCAC
* * *
44098480 AT-CATAG-TACTGAGGTATCGCTGGTGCCCGAGGCTC-CTGCACTACCAAGGGCCTAGTTTACC
65 ATCCA-AGCAACT-AGGTATCGATGGTGCCCGAGGCTCTC-GCACGACCAAGGGCCTAGTTTACC
* ** *
44098542 GATGGTG-TCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTAC-CGACAGTGTCCGAGGCTCCCG
127 GATGATGCT-CGAGGCTCCCACACGACCAAGGGCCTA-GTTACTAGACAGTGTCCGAGGCTCCCG
* * * * *
44098605 CACATCATAGCACCAAGGTGTCGATGGTGCCCGAGGCTC-CTGCACGACCAAGAG-CCTA-GTT-
190 CACATCAGAGCACCAAGGTGCCGATGGTGCCCGAAGCTCTC-GCACGA-CAAAAGTACTATGTTG
* * ** * *
44098666 TGCTGATGGTGTCCGAGGCTCCCGC-CTATCCGAGTGCCCAGGTGCCAG
253 T-C-GATGGTGTCCGAGGCTCCCACAC-ATCCAAGCACCCAGGTGTCGG
* * * * * * *
44098714 TGGTGCCTGAGGCTTTCACACGACCAAGGGCATAGGTAGCCGATGGTG-CCTGAGGCTCCCGCA
1 TGGTGCCCGAGGCTTCCGCAAGACCAAGGGCCTAGGTTGCCGATAGTGTCC-GAGGCTCCCGCA
44098777 AGAACAAGGA
Statistics
Matches: 300, Mismatches: 46, Indels: 28
0.80 0.12 0.07
Matches are distributed among these distances:
295 1 0.00
296 14 0.05
297 226 0.75
298 59 0.20
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (298 bp):
TGGTGCCCGAGGCTTCCGCAAGACCAAGGGCCTAGGTTGCCGATAGTGTCCGAGGCTCCCGCACA
TCCAAGCAACTAGGTATCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTACCGATG
ATGCTCGAGGCTCCCACACGACCAAGGGCCTAGTTACTAGACAGTGTCCGAGGCTCCCGCACATC
AGAGCACCAAGGTGCCGATGGTGCCCGAAGCTCTCGCACGACAAAAGTACTATGTTGTCGATGGT
GTCCGAGGCTCCCACACATCCAAGCACCCAGGTGTCGG
Found at i:44098684 original size:85 final size:84
Alignment explanation
Indices: 44097828--44099095 Score: 494
Period size: 85 Copynumber: 14.9 Consensus size: 84
44097818 TGGTGGTGCT
* * * ** *
44097828 CGAGGCTCCCGCACATAACAGCACCGAGGTGCCGATTGTATCCGAGGCT-CTCGTACGACCAAGG
1 CGAGGCTCCCGCACATCA-AGCACCTAGGTGCCGATGGTGCCCGAGGCTCCT-GCACGACCAAGG
* * * *
44097892 GCCTCGTTTTCCAATGGTGTC
64 GCCTAGGTTGCCGATGGTGTC
* * * * **
44097913 CGAGGCTCCCGCACATCCGAGAACCCAGGTGCCGATGGTGCCCGATGCTTTTGCACGACCAAGGG
1 CGAGGCTCCCGCACAT-CAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGGG
* *
44097978 CCTAGGTAGCCGACGGTG-C
65 CCTAGGTTGCCGATGGTGTC
* * * * * * *** * *
44097997 TTGAGGCTCCCCCAAGACCAATG-GCCTAGTTTTTTGATGGTGTCCGAGGCTCCTGCAC-ATCCG
1 -CGAGGCTCCCGC-ACATCAA-GCACCTAG-GTGCCGATGGTGCCCGAGGCTCCTGCACGA-CCA
** *
44098060 AGCACCTTGG-TGCCGATGGTG-C
61 AGGGCCTAGGTTGCCGATGGTGTC
* * ** *
44098082 TCGAGGCTCTCGCATGA-CTAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTTCC-GCACGACCA
1 -CGAGGCTCCCGCA-CATC-AAGCACCTAGG-TGCCGATGGTGCCCGAGGC-TCCTGCACGACCA
* *
44098145 AGGGCCTAGTTTGCCGATAGTGTC
61 AGGGCCTAGGTTGCCGATGGTGTC
* * *
44098169 CGAGGCTCTCGCACATCCAAGCAACTAGGTGTCGATGGTGCCCGAGGCT-CTCGCACGACCAAGG
1 CGAGGCTCCCGCACAT-CAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCT-GCACGACCAAGG
** * *
44098233 GCCTATTTTACCGATGATG-C
64 GCCTAGGTTGCCGATGGTGTC
* * **** * * * * * * *
44098253 TCGAGGCTCCCACACGACCAAGGGTTTAGTTTCTAGATGGTGTCCGGGGCTCCCGCAC-ATCCGA
1 -CGAGGCTCCCGCAC-ATCAAGCACCTAGGTGC-CGATGGTGCCCGAGGCTCCTGCACGA-CCAA
* * *
44098317 GCGCCCAGG-TGCCGATGGTGCC
62 GGGCCTAGGTTGCCGATGGTGTC
* * * * * * * **
44098339 CGAAGCTCTCGCACGA-CAAAAGTA-CTATGTTGTCGATGGTGTCCGAGGTTCCCACAC-ATCCA
1 CGAGGCTCCCGCAC-ATC--AAGCACCTA-GGTGCCGATGGTGCCCGAGGCTCCTGCACGA-CCA
** * * *
44098401 AGCACCCAGG-TGTCGGTGGTG-C
61 AGGGCCTAGGTTGCCGATGGTGTC
* * ** * ** * *
44098423 TCGAGGCT-CCGCAAGACCAAGGGCCTAGGTTGCTGAAT-GTGTTCGAGGCTCCCGCAC-ATCAT
1 -CGAGGCTCCCGC-ACATCAAGCACCTAGG-TGCCG-ATGGTGCCCGAGGCTCCTGCACGACCA-
** * *
44098485 A-GTACTGAGGTAT--CGCTGGTGCC
61 AGGGCCT-AGGT-TGCCGATGGTGTC
* * ** * * *
44098508 CGAGGCTCCTGCACTACCAAGGGCCTAGTTTACCGATGGTGTCCGAGGCTCCTGCACGACCAAGG
1 CGAGGCTCCCGCAC-ATCAAGCACCTAG-GTGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGG
* **
44098573 GCCTAGGTTACCGACAGTGTC
64 GCCTAGGTTGCCGATGGTGTC
* * *
44098594 CGAGGCTCCCGCACATCATAGCACCAAGGTGTCGATGGTGCCCGAGGCTCCTGCACGACCAAGAG
1 CGAGGCTCCCGCACATCA-AGCACCTAGGTGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGGG
* *
44098659 CCTAGTTTGCTGATGGTGTC
65 CCTAGGTTGCCGATGGTGTC
* ** * * * *
44098679 CGAGGCTCCCGC-CTATCCGAGTGCCCAGGTGCC-AGTGGTGCCTGAGGCT-TTCACACGACCAA
1 CGAGGCTCCCGCAC-AT-CAAGCACCTAGGTGCCGA-TGGTGCCCGAGGCTCCT-GCACGACCAA
* *
44098741 GGGCATAGGTAGCCGATGGTG-C
62 GGGCCTAGGTTGCCGATGGTGTC
* * * * * * ** * * *
44098763 CTGAGGCTCCCGCAAGAACAAGGACTTAGTTTGCCGATGGTGTCTAAAGCTCCCGCAC-ATCCGA
1 C-GAGGCTCCCGC-ACATCAAGCACCTAG-GTGCCGATGGTGCCCGAGGCTCCTGCACGA-CCAA
* * * *
44098827 GCGTCC-AAG-TGCTGATGGTGCC
62 G-GGCCTAGGTTGCCGATGGTGTC
** * ** ** * * *
44098849 CGAGGCTTTCGCACGACCAAGTGCCTAGGTTGCTAATGGTCCCCGAGGGTCCCGCACGACCAAGG
1 CGAGGCTCCCGCAC-ATCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGG
* *
44098914 GCCTA-GTCTGCCGATTGTGTT
64 GCCTAGGT-TGCCGATGGTGTC
* * * *
44098935 CGAGGCTCTCGCACATCCAAGCACCTAGGTGCCGATGGTTCCCGAGGAT-CTCACACGACCAAGG
1 CGAGGCTCCCGCACAT-CAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCT-GCACGACCAAGG
*
44098999 GCCTAGGTTGCCTATGGTGTC
64 GCCTAGGTTGCCGATGGTGTC
* * * * * *
44099020 TGAGGCTCCTGCACATCCTAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CGAGGCTCCCGCACAT-CAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGGG
* *
44099085 ACTATGTTGCC
65 CCTAGGTTGCC
44099096 AGAATGGCTT
Statistics
Matches: 888, Mismatches: 224, Indels: 142
0.71 0.18 0.11
Matches are distributed among these distances:
83 8 0.01
84 68 0.08
85 608 0.68
86 198 0.22
87 6 0.01
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (84 bp):
CGAGGCTCCCGCACATCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGC
CTAGGTTGCCGATGGTGTC
Found at i:44099500 original size:43 final size:43
Alignment explanation
Indices: 44099390--44099559 Score: 175
Period size: 43 Copynumber: 4.0 Consensus size: 43
44099380 ATCCAACGTT
* * *
44099390 CTAGGTTCCCGATGGTGTCCAAGGCTCCCGCAC-ATCCAA--GC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC
* * * * *
44099431 ACTACGATGCCAATGGTGCTCGAGGCTCTCGCACGACCAAGGGC
1 -CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
*
44099475 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCCCGACCAAGGGC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * * *
44099518 CTAGGTTGTCGATGGTACCCGAGGCTCACGTACAACCAAGGG
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
44099560 GAGGGACTGG
Statistics
Matches: 105, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
42 29 0.28
43 74 0.70
44 2 0.02
ACGTcount: A:0.20, C:0.33, G:0.30, T:0.17
Consensus pattern (43 bp):
CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
Found at i:44101453 original size:14 final size:13
Alignment explanation
Indices: 44101434--44101463 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
44101424 CCATCAGGAA
44101434 AGAATTTTGAAGAC
1 AGAATTTTGAA-AC
44101448 AGAATTTTGAAAC
1 AGAATTTTGAAAC
44101461 AGA
1 AGA
44101464 GGGAGTCTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (13 bp):
AGAATTTTGAAAC
Found at i:44104057 original size:42 final size:42
Alignment explanation
Indices: 44104009--44104105 Score: 149
Period size: 42 Copynumber: 2.3 Consensus size: 42
44103999 CACATTCGAG
*
44104009 GCACCAAAGTGCCAATGCTGCTCGAGGCTCTTACACATCCAA
1 GCACCAAAGTGCCAATGCTGCTCGAGGCTCTCACACATCCAA
* *
44104051 GCACCAAAGTGCCAATGCTGCTCGAGGCTCTCGCACATCCGA
1 GCACCAAAGTGCCAATGCTGCTCGAGGCTCTCACACATCCAA
*
44104093 GCCACCAAGGTGC
1 G-CACCAAAGTGC
44104106 TGGAGGCTCT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 40 0.80
43 10 0.20
ACGTcount: A:0.26, C:0.35, G:0.23, T:0.16
Consensus pattern (42 bp):
GCACCAAAGTGCCAATGCTGCTCGAGGCTCTCACACATCCAA
Found at i:44104626 original size:43 final size:43
Alignment explanation
Indices: 44104564--44104731 Score: 180
Period size: 43 Copynumber: 3.9 Consensus size: 43
44104554 TTCTCGATGG
* * * *
44104564 TGCTCG-GAGCTCCCACACATCCGAGGCACCAAGGTGCCGACGG
1 TGCTCGAG-GCTCCCGCACATCCGAGGCACCAAGGTGCCAATGC
* *
44104607 TGCTCGAGGCTCCCGCACATCC-AAGCACCAAAGTGCCAATGC
1 TGCTCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCAATGC
* * * *
44104649 TGCTCGAGTCTCCCGCATATCTGA-GCTACCAAGGTGCCAATTC
1 TGCTCGAGGCTCCCGCACATCCGAGGC-ACCAAGGTGCCAATGC
* * *
44104692 TGCTCGAGGCTCCAGCACATCTGAGCCACCAAGGTGCCAA
1 TGCTCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCAA
44104732 CAGTGGGGAT
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
42 36 0.34
43 68 0.64
44 2 0.02
ACGTcount: A:0.23, C:0.36, G:0.24, T:0.17
Consensus pattern (43 bp):
TGCTCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCAATGC
Found at i:44107077 original size:43 final size:42
Alignment explanation
Indices: 44106899--44107639 Score: 233
Period size: 43 Copynumber: 17.5 Consensus size: 42
44106889 GGATTTGCAG
** *
44106899 GAGCCTCGAACACCATCGGCAACCTAGGTCCTTGGTCGTACGA
1 GAGCCTCGGGCACCATCGG-AACCTAGGTCCTTGGTCGTGCGA
* * * *
44106942 GAGCCTTGGGCACCATCAGCACCTAGGTGCTTGGAT-GTGCGA
1 GAGCCTCGGGCACCATCGGAACCTAGGTCCTTGG-TCGTGCGA
* *** * * *
44106984 AAGCCTCAAACACCATCGGGAAACTAGGCCCTTGCTCGTGC-A
1 GAGCCTCGGGCACCATC-GGAACCTAGGTCCTTGGTCGTGCGA
*
44107026 GTAGCCTCGGGCACCATCGGTAATCTAGG-CCTTTGGTCGTGCGA
1 G-AGCCTCGGGCACCATCGG-AACCTAGGTCC-TTGGTCGTGCGA
* ** ** * *
44107070 GAGCCTCGGGCACCATC-AAGACCCGGGAGCTCAGAT-GTGCGA
1 GAGCCTCGGGCACCATCGGA-ACCTAGGTCCT-TGGTCGTGCGA
* * * * **
44107112 GAGCGTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGTAA
1 GAGCCTCGGGCACCATCG-GAACCTAGGTCCTTGGTCGTGCGA
* * * *
44107155 GAGCCTCGGGCACCATCAGTACCTAGG-CGTTTGGAT-GTGTG-
1 GAGCCTCGGGCACCATCGGAACCTAGGTC-CTTGG-TCGTGCGA
* ** * * * ** *
44107196 GCAGCCTCGGGGACCATCGGTAAAATAAGCCCTTTGTTATGCGG
1 G-AGCCTCGGGCACCATCGG-AACCTAGGTCCTTGGTCGTGCGA
* * * * * ** *
44107240 GAGCCGCGGGCACCATCGGCACCTCGGTGCATGGAT-GTATGG
1 GAGCCTCGGGCACCATCGGAACCTAGGTCCTTGG-TCGTGCGA
* * * * * * * *
44107282 GAGCCTTGGGCACTATTGGCAACTTAGGACCTTGTTCATCCGA
1 GAGCCTCGGGCACCATCGG-AACCTAGGTCCTTGGTCGTGCGA
* * * * *
44107325 AAGCCTTGAGCACCATC--AACACATTGGTGCTTGGAT-GTGCG-
1 GAGCCTCGGGCACCATCGGAAC-C-TAGGTCCTTGG-TCGTGCGA
* * *
44107366 GTAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
1 G-AGCCTCGGGCACCATCGG-AACCTAGGTCCTTGGTCGTGCGA
* * * *
44107410 GAGCCTCGGGCACCATC-GACACCTAGG-CGCTCAGAT-GTACGG
1 GAGCCTCGGGCACCATCGGA-ACCTAGGTC-CT-TGGTCGTGCGA
* * * * * ** *
44107452 GTGCCTCGGACACCATCGAGAA-CTTGGTGCTTGTTTATGCGG
1 GAGCCTCGGGCACCATCG-GAACCTAGGTCCTTGGTCGTGCGA
* * * * * *
44107494 GAGCCTCAGACACCATCGGCAACCTTGGTGCTT-AT-GTGCGG
1 GAGCCTCGGGCACCATCGG-AACCTAGGTCCTTGGTCGTGCGA
** * * * * * *
44107535 GAGCCTTAGACACCATTGGCAAACTAGGCCCTTGGTCGTACGG
1 GAGCCTCGGGCACCATCGG-AACCTAGGTCCTTGGTCGTGCGA
* * * * * *
44107578 GTGTCTCAGGCACCATCGGCATCCTAGGCCCTTGGTCGTGTGA
1 GAGCCTCGGGCACCATCGG-AACCTAGGTCCTTGGTCGTGCGA
44107621 GAGCCTCGGGCACCATCGG
1 GAGCCTCGGGCACCATCGG
44107640 CTCTTGGGTG
Statistics
Matches: 509, Mismatches: 146, Indels: 86
0.69 0.20 0.12
Matches are distributed among these distances:
40 3 0.01
41 40 0.08
42 203 0.40
43 251 0.49
44 9 0.02
45 3 0.01
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.21
Consensus pattern (42 bp):
GAGCCTCGGGCACCATCGGAACCTAGGTCCTTGGTCGTGCGA
Found at i:44107125 original size:128 final size:127
Alignment explanation
Indices: 44106894--44107213 Score: 326
Period size: 128 Copynumber: 2.5 Consensus size: 127
44106884 CACTAGGATT
** * * *
44106894 TGCAGGAGCCTCGAACACCATCGGCAACCTAGGTCC-TTGGTCGTACGAGAGCCTTGGGCACCAT
1 TGCA-GAGCCTCGGGCACCATCGGTAACCTAGG-CCTTTGGTCGTGCGAGAGCCTCGGGCACCAT
* * ** **
44106958 CAGCACCTAGGTGCTTGGATGTGCGAAAGCCTCAAACACCATCGGGAAACTAGGCCCTTGCTCG
64 CAGCACCCAGGAGCTCAGATGTGCGAAAGCCTCAAACACCATCGACAAACTAGGCCCTTGCTCG
*
44107022 TGCAGTAGCCTCGGGCACCATCGGTAATCTAGGCCTTTGGTCGTGCGAGAGCCTCGGGCACCATC
1 TGCAG-AGCCTCGGGCACCATCGGTAACCTAGGCCTTTGGTCGTGCGAGAGCCTCGGGCACCATC
* * * ** * *
44107087 AAG-ACCCGGGAGCTCAGATGTGCGAGAGCGTCGGACACCATCGACAACCTAGGCCCTTGGTCG
65 -AGCACCCAGGAGCTCAGATGTGCGAAAGCCTCAAACACCATCGACAAACTAGGCCCTTGCTCG
* * * * *
44107150 TGTAAGAGCCTCGGGCACCATCAGT-ACCTAGGCGTTTGGAT-GTGTG-GCAGCCTCGGGGACCA
1 TG-CAGAGCCTCGGGCACCATCGGTAACCTAGGCCTTTGG-TCGTGCGAG-AGCCTCGGGCACCA
44107212 TC
63 TC
44107214 GGTAAAATAA
Statistics
Matches: 161, Mismatches: 25, Indels: 13
0.81 0.13 0.07
Matches are distributed among these distances:
126 1 0.01
127 34 0.21
128 122 0.76
129 4 0.02
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (127 bp):
TGCAGAGCCTCGGGCACCATCGGTAACCTAGGCCTTTGGTCGTGCGAGAGCCTCGGGCACCATCA
GCACCCAGGAGCTCAGATGTGCGAAAGCCTCAAACACCATCGACAAACTAGGCCCTTGCTCG
Found at i:44107415 original size:85 final size:85
Alignment explanation
Indices: 44107021--44107640 Score: 338
Period size: 85 Copynumber: 7.3 Consensus size: 85
44107011 GCCCTTGCTC
* * * *
44107021 GTGCAGTAGCCTCGGGCACCATCGGTAATCTAGGCCTTTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGTAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* ** * **
44107086 CAAGACCCGGGAGCTCAGAT
66 CAACACCTAGGTGCTTGGAT
* * * **
44107106 GTGCGAG-AGCGTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGTAAGAGCCTCGGGCACCA
1 GTGCG-GTAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCA
** * *
44107170 TCAGTACCTAGGCGTTTGGAT
65 TCAACACCTAGGTGCTTGGAT
* * * * ** * * ** * *
44107191 GTGTGGCAGCCTCGGGGACCATCGGTAAAATAAGCCCTTTGTTATGCGGGAGCCGCGGGCACCAT
1 GTGCGGTAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
** * *
44107256 CGGCACCTCGGTGCATGGAT
66 CAACACCTAGGTGCTTGGAT
** * * * * * * * * * * * *
44107276 GTATGGGAGCCTTGGGCACTATTGGCAACTTAGGACCTTGTTCATCCGAAAGCCTTGAGCACCAT
1 GTGCGGTAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* *
44107341 CAACACATTGGTGCTTGGAT
66 CAACACCTAGGTGCTTGGAT
* *
44107361 GTGCGGTAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGTAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* * **
44107426 CGACACCTAGGCGCTCAGAT
66 CAACACCTAGGTGCTTGGAT
* * * ** * ** * * *
44107446 GTACGGGT-GCCTCGGACACCATCGAG-AA-CTTGGTGCTTGTTTATGCGGGAGCCTCAGACACC
1 GTGC-GGTAGCCTCGGGCACCATCG-GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACC
** *
44107508 ATCGGCAACCTTGGTGCTT--AT
64 ATCAAC-ACCTAGGTGCTTGGAT
* ** * * * * * * * *
44107529 GTGCGGGAGCCTTAGACACCATTGGCAAACTAGGCCCTTGGTCGTACGGGTGTCTCAGGCACCAT
1 GTGCGGTAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
** **
44107594 CGGCATCCTAGGCCCTTGG-T
66 CAACA-CCTAGGTGCTTGGAT
*
44107614 CGTGTGAG-AGCCTCGGGCACCATCGGC
1 -GTGCG-GTAGCCTCGGGCACCATCGGC
44107641 TCTTGGGTGC
Statistics
Matches: 398, Mismatches: 124, Indels: 25
0.73 0.23 0.05
Matches are distributed among these distances:
82 3 0.01
83 21 0.05
84 69 0.17
85 280 0.70
86 24 0.06
87 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (85 bp):
GTGCGGTAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
CAACACCTAGGTGCTTGGAT
Found at i:44114827 original size:43 final size:43
Alignment explanation
Indices: 44114774--44114946 Score: 217
Period size: 43 Copynumber: 4.0 Consensus size: 43
44114764 CTCCCCACTG
* *
44114774 TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
1 TCGGCACCTTGGTGGCTCGGATGTGCGAGAGCCTCGAGCACCA
* *
44114817 TCGGTACCTTGGTGGCTCGGATGTGCGAGAGCCTCGAGCAGCA
1 TCGGCACCTTGGTGGCTCGGATGTGCGAGAGCCTCGAGCACCA
* * *
44114860 TCGGCACTTTGGT-GCTTGGATGTGTG-GTAGCCTCGAGCACCA
1 TCGGCACCTTGGTGGCTCGGATGTGCGAG-AGCCTCGAGCACCA
* * *
44114902 TCGGCACCTT-GTCGCCTCGGATGTGCAAGAGCCCCGAGCACCA
1 TCGGCACCTTGGT-GGCTCGGATGTGCGAGAGCCTCGAGCACCA
44114945 TC
1 TC
44114947 AGCAACTTTA
Statistics
Matches: 113, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
41 3 0.03
42 33 0.29
43 76 0.67
44 1 0.01
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.21
Consensus pattern (43 bp):
TCGGCACCTTGGTGGCTCGGATGTGCGAGAGCCTCGAGCACCA
Found at i:44114893 original size:85 final size:86
Alignment explanation
Indices: 44114774--44114955 Score: 233
Period size: 85 Copynumber: 2.1 Consensus size: 86
44114764 CTCCCCACTG
* * * *
44114774 TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGT-GGCTCGGA
1 TCGGCACTTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTT-GTCGCCTCGGA
* * *
44114838 TGTGCGAGAGCCTCGAGCAGCA
65 TGTGCAAGAGCCCCGAGCACCA
* * *
44114860 TCGGCACTTTGGT-GCTTGGATGTGTGGTAGCCTCGAGCACCATCGGCACCTTGTCGCCTCGGAT
1 TCGGCACTTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGTCGCCTCGGAT
44114924 GTGCAAGAGCCCCGAGCACCA
66 GTGCAAGAGCCCCGAGCACCA
*
44114945 TCAGCAACTTT
1 TCGGC-ACTTT
44114956 AGCCCCTGTT
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
84 2 0.02
85 64 0.77
86 17 0.20
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.22
Consensus pattern (86 bp):
TCGGCACTTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGTCGCCTCGGAT
GTGCAAGAGCCCCGAGCACCA
Found at i:44122059 original size:24 final size:24
Alignment explanation
Indices: 44121979--44122059 Score: 81
Period size: 24 Copynumber: 3.4 Consensus size: 24
44121969 CTGGTTAGGT
* * *
44121979 TCCCGGCGGTGCTCCAGTGATCCA
1 TCCCGGCAGTGCTCCGGTGAACCA
** *
44122003 TCCCGGTGGTGTTCCGGTGAACCA
1 TCCCGGCAGTGCTCCGGTGAACCA
* *
44122027 TCCCAGCAGTGCTCCGGTGAGCCA
1 TCCCGGCAGTGCTCCGGTGAACCA
*
44122051 TTCCGGCAG
1 TCCCGGCAG
44122060 CATAGGCCCT
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.14, C:0.35, G:0.31, T:0.21
Consensus pattern (24 bp):
TCCCGGCAGTGCTCCGGTGAACCA
Found at i:44122170 original size:43 final size:43
Alignment explanation
Indices: 44122062--44123036 Score: 543
Period size: 43 Copynumber: 22.9 Consensus size: 43
44122052 TCCGGCAGCA
**
44122062 TAGGCCCTTGGTCGTGCGGGAGCC-CCAAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACC
* ** ** * * *
44122104 TTGGTGCTACG-CTGTGCAGGAGCCTCGAACTCCATCGGCAACC
1 TAGGCCCTTGGTC-GTGCGGGAGCCTCGGACACCATCGGCAACC
** ** *
44122147 TAGGCCCTTGGTCGTGCAAGAGCCTCGGGGACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
** *
44122189 TAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACAATCGGCGAA-C
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGC-AACC
* * * * *
44122232 TAGGCCCTTGGTTGTACGGGAGCCTCGGGCAACATCGACAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * *
44122275 TAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATCGG-GACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** * *
44122317 TGGGTGCTGGGAT-GTGCGGGAGCGTCGGACACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * *
44122360 TAGGCCCTTGGTCGTGCGAGAGCTTTGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * * * *
44122402 TAGGCGCTCGAAT-GTGTGGGAGCCTCGGAGACCATCGGCAAAC
1 TAGGCCCTTG-GTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * * *
44122445 TAAGCCCTTAGTCATGCGGGAGCCTCGGGCACCATCAGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** * *
44122487 TCGGTGCTTGGAT-GTGCGAGAGCCTCAGG-CACCATCAGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTC-GGACACCATCGGCAACC
* * *
44122530 TAGGCCTTTGGTTGTGCGGGAACCTC-GAGCACCATC-G-ATACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCA-ACC
* ** * * * * **
44122572 TTGGTACTTGAAT-GTGTGGGAACCTTGGACACCATCGATAACC
1 TAGGCCCTTG-GTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * *
44122615 TAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATCAGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * *
44122657 TAGGCGCTCGGAT-GTGCGGGAGCCTCAGACACCATCGGCAA-C
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** *
44122699 TTGGTGCTT-GTATGTGCGGGAGCCTC-GAGCACCATCGGC-ACC
1 TAGGCCCTTGGT-CGTGCGGGAGCCTCGGA-CACCATCGGCAACC
* ** * * * ** * *
44122741 TTGGTGGCTCAGAT-GTGCAGGAGCCTTAGACACTATCAGCAACC
1 TAGG-CCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** * *
44122785 TTGGTGCTT-AT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** * * * * * *
44122826 TAGGCCTTTGGTTTTACAGGAGCCTTGGGCACCATCAGCATCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* *
44122869 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** * * *
44122911 TGGGTGCTCGGGT-GTGCGGGAGCCTCGGACACCATCGGTAAAC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
** * **
44122954 TAGGCCCTTGGTCACGCGGGAGCCTCGGACACCATCGACAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* *
44122997 TAGGCCCTTGGTCGTTG-GAGAGCCTCAGG-CACCACCGGCA
1 TAGGCCCTTGGTCG-TGCGGGAGCCTC-GGACACCATCGGCA
44123037 CCTTGGTGGC
Statistics
Matches: 708, Mismatches: 180, Indels: 89
0.72 0.18 0.09
Matches are distributed among these distances:
40 1 0.00
41 38 0.05
42 285 0.40
43 368 0.52
44 15 0.02
45 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
Found at i:44122205 original size:85 final size:85
Alignment explanation
Indices: 44122062--44122278 Score: 247
Period size: 85 Copynumber: 2.5 Consensus size: 85
44122052 TCCGGCAGCA
* ** * * *
44122062 TAGGCCCTTGGTCGTGCGGGAGCCCCAAGCACCATCGGCACCTTGGTGCTACGCTGTGCAGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGACACCTAGGTGCTACGATGTGCAGGAGC
* *
44122127 CTCGAACTCCATCGGC-AACC
66 CTCGAACACAATCGGCGAA-C
** * ** *
44122147 TAGGCCCTTGGTCGTGCAAGAGCCTCGGGGACCATCGACACCTAGGTGCTTGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGACACCTAGGTGCTACGATGTGCAGGAGC
*
44122212 CTCGGACACAATCGGCGAAC
66 CTCGAACACAATCGGCGAAC
* * *
44122232 TAGGCCCTTGGTTGTACGGGAGCCTCGGGCAACATCGACAACCTAGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGAC-ACCTAGG
44122279 CCCTTGGTCG
Statistics
Matches: 109, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
85 100 0.92
86 9 0.08
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGACACCTAGGTGCTACGATGTGCAGGAGC
CTCGAACACAATCGGCGAAC
Found at i:44122297 original size:128 final size:127
Alignment explanation
Indices: 44122135--44123099 Score: 602
Period size: 128 Copynumber: 7.6 Consensus size: 127
44122125 GCCTCGAACT
* ** * *
44122135 CCATCGGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGGACCATCGACACCTAGGTGCTTGG
1 CCATCGACAACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGG
* * * *
44122200 ATGTGCGGGAGCCTCGGACACAATCGGCGAA-CTAGGCCCTTGGTTGTACGGGAGCCTCGGGCA
65 ATGTGCGGGAGCCTCGGACACCATCGGC-AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
* * * * * *
44122263 ACATCGACAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATCGGGACCTGGGTGCTGGG
1 CCATCGACAACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGG
* * *
44122328 ATGTGCGGGAGCGTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTTGGGCA
65 ATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
* * * * * * * **
44122391 CCATCGGC-ACCTAGGCGCTCGAATGTGTGGGAGCCTCGGAG-ACCATCGGCAAACTAAGCCCTT
1 CCATCGACAACCTAGGCCCTTG-GTGTGCGGGAGCCTCGG-GCACCATCGGC-ACCTAGGTGCTT
* * * * * ** *
44122454 AG-TCATGCGGGAGCCTCGGGCACCATCAGC-ACCTCGGTGCTTGGAT-GTGCGAGAGCCTCAGG
63 GGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGG
44122516 CA
126 CA
* * * ** * *
44122518 CCATC-AGCAACCTAGGCCTTTGGTTGTGCGGGAACCTCGAGCACCATCGATACCTTGGTACTTG
1 CCATCGA-CAACCTAGGCCCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTG
* * * * ** *
44122582 AATGTGTGGGAACCTTGGACACCATCGATAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGGCA
64 GATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
* * * * * *
44122646 CCATC-AGC-ACCTAGGCGCTCGGATGTGCGGGAGCCTCAGACACCATCGGCAACTTGGTGCTTG
1 CCATCGA-CAACCTAGGCCCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTG
* * ** * * **
44122709 TATGTGCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGGCTCAGAT-GTGC-AGGAGCCTTAG
64 GATGTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGG-CCCT-TGGTCGTGCGA-GAGCCTCGG
*
44122770 ACA
125 GCA
* * ** * * * *
44122773 CTATC-AGCAACCTTGGTGCTT-ATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGG-CCTTT
1 CCATCGA-CAACCTAGGCCCTTGGTGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGC-TT
* * * * * * * *
44122835 GGTTTTACAGGAGCCTTGGGCACCATCAGCATCCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
63 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
* * ** * * * * **
44122900 CCATCGGC-ACCTGGGTGCTCGGGTGTGCGGGAGCCTCGGACACCATCGGTAAACTAGGCCCTTG
1 CCATCGACAACCTAGGCCCT-TGGTGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGTGCTTG
** * ** *
44122964 G-TCACGCGGGAGCCTCGGACACCATCGACAAAATAGGCCCTTGGTCGTTG-GAGAGCCTCAGGC
64 GAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG-TGCGAGAGCCTCGGGC
44123027 A
127 A
* * * ** * * * * *
44123028 CCACCGGC-ACCTTGGTGGCTCGGATGTACGGGAGCCTCGGTCACCATCGACAACCTTGGTGCTT
1 CCATCGACAACCTAGG-CCCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTT
44123092 GGATGTGC
63 GGATGTGC
44123100 AGCATGCTCG
Statistics
Matches: 648, Mismatches: 154, Indels: 69
0.74 0.18 0.08
Matches are distributed among these distances:
126 48 0.07
127 228 0.35
128 329 0.51
129 42 0.06
130 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (127 bp):
CCATCGACAACCTAGGCCCTTGGTGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGA
TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
Found at i:44122364 original size:85 final size:85
Alignment explanation
Indices: 44122166--44122990 Score: 685
Period size: 85 Copynumber: 9.7 Consensus size: 85
44122156 GGTCGTGCAA
** * ** * *
44122166 GAGCCTCGGGGACCATCGAC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACAATCGGCG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-
* ** * * *
44122229 AACTAGGCCCTTGGTTGTACGG
64 ACCTAGGTGCTCGGATGTGCGG
* * * * * *
44122251 GAGCCTCGGGCAACATCGACAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATCGGGAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* *
44122316 CTGGGTGCTGGGATGTGCGG
66 CTAGGTGCTCGGATGTGCGG
* * * *
44122336 GAGCGTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTTGGGCACCATCGGCAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * *
44122401 CTAGGCGCTCGAATGTGTGG
66 CTAGGTGCTCGGATGTGCGG
* * * * * *
44122421 GAGCCTCGGAGACCATCGGCAAACTAAGCCCTTAGTCATGCGGGAGCCTCGGGCACCATCAGCAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * *
44122486 CTCGGTGCTTGGATGTGCGA
66 CTAGGTGCTCGGATGTGCGG
* * * * * **
44122506 GAGCCTCAGG-CACCATCAGCAACCTAGGCCTTTGGTTGTGCGGGAACCTCGAGCACCATCGATA
1 GAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * * * *
44122570 CCTTGGTACTTGAATGTGTGG
65 CCTAGGTGCTCGGATGTGCGG
* * ** * * *
44122591 GAACCTTGGACACCATCGATAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATCAGCAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
*
44122656 CTAGGCGCTCGGATGTGCGG
66 CTAGGTGCTCGGATGTGCGG
* * ** * *
44122676 GAGCCTCAGACACCATCGGCAA-CTTGGTGCTT-GTATGTGCGGGAGCCTCGAGCACCATCGGCA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-CGTGCGGGAGCCTCGGGCACCATCGGCA
* * *
44122739 CCTTGGTGGCTCAGATGTGCAG
65 CCTAGGT-GCTCGGATGTGCGG
** * * * ** * *
44122761 GAGCCTTAGACACTATCAGCAACCTTGGTGCTT-AT-GTGCGGGAGCCTCGGACACCATCGGCAA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
* * * * * * *
44122824 ACTAGG-CCTTTGGTTTTACAG
65 CCTAGGTGC-TCGGATGTGCGG
* * * * *
44122845 GAGCCTTGGGCACCATCAGCATCCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* *
44122910 CTGGGTGCTCGGGTGTGCGG
66 CTAGGTGCTCGGATGTGCGG
* * ** *
44122930 GAGCCTCGGACACCATCGGTAAACTAGGCCCTTGGTCACGCGGGAGCCTCGGACACCATCG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
44122991 ACAAAATAGG
Statistics
Matches: 586, Mismatches: 142, Indels: 24
0.78 0.19 0.03
Matches are distributed among these distances:
83 3 0.01
84 94 0.16
85 418 0.71
86 71 0.12
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (85 bp):
GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
CTAGGTGCTCGGATGTGCGG
Found at i:44122429 original size:213 final size:212
Alignment explanation
Indices: 44122062--44122522 Score: 566
Period size: 213 Copynumber: 2.2 Consensus size: 212
44122052 TCCGGCAGCA
* * * * *
44122062 TAGGCCCTTGGTCGTGCGGGAGCCCCAAGCACCATCGGCACCTTGGTGCTACGCTGTGCAGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCACCTGGGTGCTACGATGTGCAGGAGC
* *
44122127 CTCGAACTCCATCGGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGGACCATCGACACCTAG
66 CTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGACACCTAG
* * * * * * **
44122192 GTGCTTGGATGTGCGGGAGCCTCGGACACAATCGGCGAACTAGGCCCTTGGTTGTACGGGAGCCT
131 GCGCTCGAATGTGCGGGAGCCTCGGACACAATCGGCAAACTAAGCCCTTAGTCATACGGGAGCCT
44122257 CGGGCAACATC-GACAACC
196 CGGGCAACATCAG-C-ACC
* * * ** *
44122275 TAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATCGGGACCTGGGTGCTGGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCACCTGGGTGCTACGATGTGCAGGAGC
* * * * * *
44122340 GTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTTGGGCACCATCGGCACCTAG
66 CTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGACACCTAG
* * * *
44122405 GCGCTCGAATGTGTGGGAGCCTCGGAGACCATCGGCAAACTAAGCCCTTAGTCATGCGGGAGCCT
131 GCGCTCGAATGTGCGGGAGCCTCGGACACAATCGGCAAACTAAGCCCTTAGTCATACGGGAGCCT
*
44122470 CGGGCACCATCAGCACC
196 CGGGCAACATCAGCACC
* **
44122487 TCGGTGCTTGGAT-GTGCGAGAGCCTCAGGCACCATC
1 TAGGCCCTTGG-TCGTGCGAGAGCCTCAGGCACCATC
44122523 AGCAACCTAG
Statistics
Matches: 209, Mismatches: 37, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
212 32 0.15
213 176 0.84
214 1 0.00
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.18
Consensus pattern (212 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCACCTGGGTGCTACGATGTGCAGGAGC
CTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGACACCTAG
GCGCTCGAATGTGCGGGAGCCTCGGACACAATCGGCAAACTAAGCCCTTAGTCATACGGGAGCCT
CGGGCAACATCAGCACC
Found at i:44122531 original size:255 final size:254
Alignment explanation
Indices: 44122250--44122989 Score: 794
Period size: 255 Copynumber: 2.9 Consensus size: 254
44122240 TGGTTGTACG
* * * * *
44122250 GGAGCCTCGGGCAACATC-GACAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATCGGG
1 GGAGCCTCAGGCACCATCAG-CAACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGA
* * * * *
44122314 ACCTGGGTGCTGGGATGTGCGGGAGCGTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
64 ACCTAGGTACTTGGATGTGCGGGAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
* * * * *
44122379 GAGCTTTGGGCACCATCGGCACCTAGGCGCTCGAATGTGTGGGAGCCTCGGAGACCATCGGCAAA
129 GAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAAA
* **
44122444 CTAAGCCCTTAGTCATGCGGGAGCCTCGGGCACCATCAGCACCTCGGT-GCTTGGATGTGC-
194 CTAGGCCCTT-GTCATGCGGGAGCCTCGGGCACCATCAGCACCTCGGTGGCTCAGATGTGCA
* * *
44122504 GAGAGCCTCAGGCACCATCAGCAACCTAGGCCTTTGGTTGTGCGGGAACCTCGAGCACCATC-GA
1 G-GAGCCTCAGGCACCATCAGCAACCTAGGCCCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGA
* * * * ** *
44122568 TACCTTGGTACTTGAATGTGTGGGAACCTTGGACACCATCGATAACCTAGGCCCTTGGTCGTGTG
64 -ACCTAGGTACTTGGATGTGCGGGAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
44122633 AGAGCCTCGGGCACCATCAGCACCTAGGCGCTCGGATGTGCGGGAGCCTCAGACACCATCGGC-A
128 AGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAA
* ** * * *
44122697 ACTTGGTGCTTGT-ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCAGATGTGCA
193 ACTAGGCCCTTGTCA--TGCGGGAGCCTCGGGCACCATCAGCACCTCGGTGGCTCAGATGTGCA
* * * * ** * *
44122760 GGAGCCTTAGACACTATCAGCAACCTTGGTGCTT-ATGTGCGGGAGCCTCGGACACCATCGGCAA
1 GGAGCCTCAGGCACCATCAGCAACCTAGGCCCTTGGTGTGCGGGAGCCTCGGGCACCATCGG-AA
* * * * * * * * *
44122824 ACTAGG-CCTTTGGTTTTACAGGAGCCTTGGGCACCATCAGCATCCTAGGCCCTTGGTCGTGCGA
65 CCTAGGTAC-TTGGATGTGCGGGAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
* * * *
44122888 GAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGGTGTGCGGGAGCCTCGGACACCATCGGTAAA
129 GAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAAA
* *
44122953 CTAGGCCCTTGGTCACGCGGGAGCCTCGGACACCATC
194 CTAGGCCCTT-GTCATGCGGGAGCCTCGGGCACCATC
44122990 GACAAAATAG
Statistics
Matches: 398, Mismatches: 74, Indels: 27
0.80 0.15 0.05
Matches are distributed among these distances:
252 1 0.00
253 24 0.06
254 144 0.36
255 223 0.56
256 5 0.01
257 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (254 bp):
GGAGCCTCAGGCACCATCAGCAACCTAGGCCCTTGGTGTGCGGGAGCCTCGGGCACCATCGGAAC
CTAGGTACTTGGATGTGCGGGAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGA
GCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAAACT
AGGCCCTTGTCATGCGGGAGCCTCGGGCACCATCAGCACCTCGGTGGCTCAGATGTGCA
Found at i:44122978 original size:212 final size:209
Alignment explanation
Indices: 44122421--44122991 Score: 496
Period size: 212 Copynumber: 2.7 Consensus size: 209
44122411 GAATGTGTGG
* * * * * *
44122421 GAGCCTCGGAG-ACCATCGGCAAACTAAGCCCTTAGTCATGCGGGAGCCTCGGGCACCATCAGCA
1 GAGCCTCGG-GCACCATCAGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * *
44122485 CCTCGGTGCTTGGATGTGCGAGAGCCTCAGG-CACCATCAGCAACCTAGGCCTTTGGTTGTGCGG
64 CCTCGGTGCTTGGATGTGCGGGAGCCTC-GGACACCATC-GGAACCTAGGCCCTTGG-TGTGCGG
* * * * *
44122549 GAACC-TCGAGCACCATCGATACCTTGGTACTTGAATGTGTGGGAACCTTGGACACCATCGATAA
126 GAGCCTTAGAGCACCATCGATACCTTGGTACTT-AATGTGCGGGAACCTCGGACACCATCGACAA
* *
44122613 CCTAGGCCCTTGGTCGTGTGA
190 ACTAGGCCCTTGGTC-TGTCA
* * * * *
44122634 GAGCCTCGGGCACCATCAGCACCTAGGCGCTCGGAT-GTGCGGGAGCCTCAGACACCATCGGCAA
1 GAGCCTCGGGCACCATCAGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * * * ** * * *
44122698 CTTGGTGCTTGTATGTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGTGGCTCAGATGTGCAGG
65 CTCGGTGCTTGGATGTGCGGGAGCCTCGGA-CACCATCGGAACCTAGG-CCCT-TGGTGTGCGGG
* * * *
44122762 AGCCTTAGA-CACTATCAGCA-ACCTTGGTGCTT-ATGTGCGGGAGCCTCGGACACCATCGGCAA
127 AGCCTTAGAGCACCATC-G-ATACCTTGGTACTTAATGTGCGGGAACCTCGGACACCATCGACAA
* *
44122824 ACTAGGCCTTTGGT-TTTACA
190 ACTAGGCCCTTGGTCTGT-CA
* *
44122844 GGAGCCTTGGGCACCATCAGCATCCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
1 -GAGCCTCGGGCACCATCAGCA-CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * * * **
44122909 CCTGGGTGCTCGGGTGTGCGGGAGCCTCGGACACCATCGGTAAACTAGGCCCTTGGTCACGCGGG
64 CCTCGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGT-GTGCGGG
**
44122974 AGCCTCGGA-CACCATCGA
127 AGCCTTAGAGCACCATCGA
44122992 CAAAATAGGC
Statistics
Matches: 282, Mismatches: 60, Indels: 35
0.75 0.16 0.09
Matches are distributed among these distances:
209 2 0.01
210 3 0.01
211 68 0.24
212 167 0.59
213 41 0.15
214 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (209 bp):
GAGCCTCGGGCACCATCAGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
TCGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGGTGTGCGGGAGCC
TTAGAGCACCATCGATACCTTGGTACTTAATGTGCGGGAACCTCGGACACCATCGACAAACTAGG
CCCTTGGTCTGTCA
Found at i:44123063 original size:43 final size:43
Alignment explanation
Indices: 44123016--44123097 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
44123006 GGTCGTTGGA
*
44123016 GAGCCTCAGG-CACCACCGGC-ACCTTGGTGGCTCGGATGTACGG
1 GAGCCTC-GGTCACCACCGACAACCTTGGT-GCTCGGATGTACGG
* *
44123059 GAGCCTCGGTCACCATCGACAACCTTGGTGCTTGGATGT
1 GAGCCTCGGTCACCACCGACAACCTTGGTGCTCGGATGT
44123098 GCAGCATGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 2 0.06
43 24 0.71
44 8 0.24
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (43 bp):
GAGCCTCGGTCACCACCGACAACCTTGGTGCTCGGATGTACGG
Found at i:44131459 original size:43 final size:44
Alignment explanation
Indices: 44131411--44131545 Score: 177
Period size: 43 Copynumber: 3.1 Consensus size: 44
44131401 CTTCGTACTG
* * * **
44131411 CCGGCACCTTGGTGGCTCGAATTTACGGGAGCCTCGAGCA-GTT
1 CCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCAT
44131454 CCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCAT
1 CCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCAT
* * *
44131498 -CGGCACCTTGGTGCCTCGGATGTGCGGGAGCCCCAAGCACCA-
1 CCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCAT
44131540 CCGGCA
1 CCGGCA
44131546 ACTTTGGTCC
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
43 81 0.99
44 1 0.01
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.18
Consensus pattern (44 bp):
CCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCAT
Found at i:44132082 original size:43 final size:43
Alignment explanation
Indices: 44132015--44132108 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
44132005 GCCTCCAGCG
* *
44132015 CCTTGGTGGCTCAGATGTGCGGGAGCCTCAAACACCATCGAAA
1 CCTTGGTGACTCAGATGAGCGGGAGCCTCAAACACCATCGAAA
* * * **
44132058 CCTTGGTGACTCAGATGAGGGGGAGCCTCGAGCACCATCGGCA
1 CCTTGGTGACTCAGATGAGCGGGAGCCTCAAACACCATCGAAA
44132101 CCTTGGTG
1 CCTTGGTG
44132109 CTTGGATGTG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.21, C:0.28, G:0.32, T:0.19
Consensus pattern (43 bp):
CCTTGGTGACTCAGATGAGCGGGAGCCTCAAACACCATCGAAA
Found at i:44132225 original size:43 final size:42
Alignment explanation
Indices: 44132015--44132306 Score: 248
Period size: 42 Copynumber: 6.9 Consensus size: 42
44132005 GCCTCCAGCG
* * * **
44132015 CCTTGGTGGCTCAGATGTGCGGGAGCCTCAAACACCATCGAAA
1 CCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * *
44132058 CCTTGGTGACTCAGATGAGGGGGAGCCTCGAGCACCATCGGCA
1 CCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * * * **
44132101 CCTTGGTGCTTGGATGTGCGAGAGGCTCGAGCACAATCGATA
1 CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * **
44132143 CCTTGGTGCTTGTATGTTTGAGG-GCCTCGAGCACCATCGGCA
1 CCTTGGTGCTCGGATGTGCG-GGAGCCTCGAGCACCATCGGCA
*
44132185 CCTTGGTGGCTCGGATGTGCGGGAGCCTTTGA-CACCATCGGCAA
1 CCTTGGT-GCTCGGATGTGCGGGAGCC-TCGAGCACCATCGGC-A
* * * * *
44132229 CGTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCAGCT
1 CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * * *
44132271 CCTTAGTGCAT-GTATGTGTGGGAGCGTCGAGCACCA
1 CCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGCACCA
44132307 AAGCAAAATT
Statistics
Matches: 201, Mismatches: 40, Indels: 17
0.78 0.16 0.07
Matches are distributed among these distances:
42 98 0.49
43 93 0.46
44 10 0.05
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.23
Consensus pattern (42 bp):
CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCA
Found at i:44141451 original size:15 final size:15
Alignment explanation
Indices: 44141431--44141463 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
44141421 CTCTAAAAAC
44141431 TGTCCAAATAAGGGT
1 TGTCCAAATAAGGGT
44141446 TGTCCAAATAAGGGT
1 TGTCCAAATAAGGGT
44141461 TGT
1 TGT
44141464 GTGATCAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.30
Consensus pattern (15 bp):
TGTCCAAATAAGGGT
Found at i:44143174 original size:24 final size:24
Alignment explanation
Indices: 44143118--44143174 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
44143108 CCGGTTAGGT
* * * *
44143118 TCCCGGCGGTGCTCCGGTGTACCG
1 TCCCGGCAGTGCTCCGGCGAACCA
*
44143142 TCCCAGCAGTGCTCCGGCGAACCA
1 TCCCGGCAGTGCTCCGGCGAACCA
*
44143166 TTCCGGCAG
1 TCCCGGCAG
44143175 CATAGGCCTT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.12, C:0.39, G:0.32, T:0.18
Consensus pattern (24 bp):
TCCCGGCAGTGCTCCGGCGAACCA
Found at i:44143322 original size:14 final size:14
Alignment explanation
Indices: 44143303--44143334 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
44143293 AGGTCATTTA
44143303 GCCCAACCAAACTG
1 GCCCAACCAAACTG
44143317 GCCCAACCAAACTG
1 GCCCAACCAAACTG
44143331 GCCC
1 GCCC
44143335 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:44143434 original size:65 final size:65
Alignment explanation
Indices: 44143330--44143458 Score: 249
Period size: 65 Copynumber: 2.0 Consensus size: 65
44143320 CAACCAAACT
44143330 GGCCCGGTGATTGGAGAGATTAAAAGCCCATCTCAAGAGCCTGATAGAAATGAGAAGTGTTCTAA
1 GGCCCGGTGATTGGAGAGATTAAAAGCCCATCTCAAGAGCCTGATAGAAATGAGAAGTGTTCTAA
*
44143395 GGCCCGGTGATTGGAGAGATTAAAAGCCCATCTCAAGAGCCTGATAGAAATGGGAAGTGTTCTA
1 GGCCCGGTGATTGGAGAGATTAAAAGCCCATCTCAAGAGCCTGATAGAAATGAGAAGTGTTCTA
44143459 GAAGATATAA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.22
Consensus pattern (65 bp):
GGCCCGGTGATTGGAGAGATTAAAAGCCCATCTCAAGAGCCTGATAGAAATGAGAAGTGTTCTAA
Found at i:44143995 original size:15 final size:16
Alignment explanation
Indices: 44143977--44144010 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
44143967 TCGGCACCTA
44143977 GGCA-CTCGGATGTGC
1 GGCACCTCGGATGTGC
44143992 GGCAGCCTCGGATGTGC
1 GGCA-CCTCGGATGTGC
44144009 GG
1 GG
44144011 GAGCCTCAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
17 13 0.76
ACGTcount: A:0.12, C:0.26, G:0.44, T:0.18
Consensus pattern (16 bp):
GGCACCTCGGATGTGC
Found at i:44144003 original size:17 final size:17
Alignment explanation
Indices: 44143981--44144017 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
44143971 CACCTAGGCA
44143981 CTCGGATGTGCGGCAGC
1 CTCGGATGTGCGGCAGC
*
44143998 CTCGGATGTGCGGGAGC
1 CTCGGATGTGCGGCAGC
44144015 CTC
1 CTC
44144018 AGGCACCATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.11, C:0.30, G:0.41, T:0.19
Consensus pattern (17 bp):
CTCGGATGTGCGGCAGC
Found at i:44144638 original size:171 final size:170
Alignment explanation
Indices: 44144262--44144670 Score: 446
Period size: 171 Copynumber: 2.4 Consensus size: 170
44144252 ACTCAGTCTT
* * * * *
44144262 GCGGGAGCCTCAGG-CACCACCGGCTACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
1 GCGGGAGCCTC-GGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
** * **
44144326 GACATCTTGGTGCTTGAGTGTACGGGAACCTCAGACACCATCGGCAACCTAGGCCCTTGATCGTG
65 GGTACCTTGGTGCTTGAGTGTACGGGAACCTCAGACACCATCGGCAAAATAGGCCCTTGATCGTG
* * * *
44144391 CAAGAGCCTCGGGCACCATCGACACTTAAGTGGTCGGATGA
130 CAAGAGCCTCGGCCACAATCGACACCTAAGTGCTCGGATGA
* * *
44144432 GCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTCGTCGTACGGGAGCCTCGGGCACCATCG
1 GCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* ** * * * *
44144497 GTACCTTGGTGCTTCGA-TGTGCGGGTGCCTCGGGCACCATCGGCAAAAATAGGCCCTTGGTTGT
66 GTACCTTGGTGCTT-GAGTGTACGGGAACCTCAGACACCATCGGC-AAAATAGGCCCTTGATCGT
** ** * * *
44144561 GTGAGAGCCTCGGCCACAATCGGGACCTAGGTGCTTGGATGT
129 GCAAGAGCCTCGGCCACAATCGACACCTAAGTGCTCGGATGA
* * * *
44144603 GCGGGAGCC-CTGGACACCATCGACAAAGTAGGCCCTTGGTTGTGCGAGAGCCTCAGGCACCATC
1 GCGGGAGCCTC-GGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
44144667 GGTA
65 GGTA
44144671 ACCTAGGCCA
Statistics
Matches: 199, Mismatches: 36, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
169 2 0.01
170 90 0.45
171 107 0.54
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.19
Consensus pattern (170 bp):
GCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
GTACCTTGGTGCTTGAGTGTACGGGAACCTCAGACACCATCGGCAAAATAGGCCCTTGATCGTGC
AAGAGCCTCGGCCACAATCGACACCTAAGTGCTCGGATGA
Found at i:44144899 original size:84 final size:85
Alignment explanation
Indices: 44144758--44144964 Score: 220
Period size: 84 Copynumber: 2.4 Consensus size: 85
44144748 CATCGGCAAA
* ** * ** * *
44144758 CTAGGCCCTTGGTCCTATGGGAGCCTCGGGCACCATCGGTACCTCAGTGCTATGATGTGTGGGAG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTCAGTGCTATGATGTATGGGAA
* ** * *
44144823 CCTCGGACAATGTC-GGATC
66 CCTCAGACAACATCAGAAAC
* **
44144842 CTAGGCCCTTGATCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGC-ATGGATGTATGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTCAGTGCTAT-GATGTATGGGA
*
44144906 ACCTCAGACACCATCAGAAAC
65 ACCTCAGACAACATCAGAAAC
* *
44144927 CTAGGCCCTTGGTCGTGCGAGAGCCTCAAGCACCATCG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCG
44144965 GCAAACTAGG
Statistics
Matches: 101, Mismatches: 20, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
83 2 0.02
84 61 0.60
85 38 0.38
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.21
Consensus pattern (85 bp):
CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTCAGTGCTATGATGTATGGGAA
CCTCAGACAACATCAGAAAC
Found at i:44146714 original size:554 final size:553
Alignment explanation
Indices: 44145458--44146756 Score: 1369
Period size: 554 Copynumber: 2.3 Consensus size: 553
44145448 GGATATGCGA
* * * *
44145458 AAGCCTCGGGCACAATCGGCAAACTAGG-CCATT-GGTCGTGC-AGGAGCCACGGGCACCATCGG
1 AAGCCTCGGGCACCATC-GCAAAATAGGTCC-TTCGAT-GTGCGA-GAGCCTCGGGCACCATCGG
* * ** * * * * * *
44145520 CAAAATAGGCCATTGGTCGTACGAGAGCTTCGGCCACCATTGGGACCTTAGTG--CTTGGATGTG
62 CAAAATAGGCCCTTGGTTGTGTGAGAGCCTCGGACACCATCGGAAAC-TAG-GCCCTT-GATGTA
* * *
44145583 C-GGAAG-CCTCGGACACCATCGACAAACTATGCCCTTGGTTGTGCAGGAGCCTTAGGCATCATC
124 CAGG-AGCCCTC-GACACCATCGACAAACTAGGCCCTTGGTCGTGCA-GAGCCTTAGGCACCATC
* * *
44145646 GGTAACCTAGGCCCCTTGGTCGTGTAAGAGCCTCGGGCACCATCGGCAGCTGGGCACTCGGATGT
186 GGTAACCTAGGCCCCTTGGTCGTGCAAGAGCCTCAGGCACCATCGGCACCTGGGCACTCGGATGT
*
44145711 GCGGGAGCGTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATTG
251 GCGGGAGCGTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCG
* *
44145776 GCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACAATGTCGGCATCCTAGGGCATTAGTCGTGC
316 GCACCTCAGTGCTATGATGTGCGGGAGCCTCGGACAATGTCGGCATCCTAGGCCATTAGTCGTGC
* * * *
44145841 GGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCA
381 GGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTACGGGAACCTCAGACACCATCAGAA
** * * * *
44145906 ACCTAAGCCCTTGATCGTGCGAGAGCCTCGGGCACCATCGACACCTAGGTGCTCGGATGAGCGGG
446 ACCTAAGCCCTTGATCGTGCGAGAGCCTCAAGCACCATCGACAACTAGGTCCTCGGATGAGCAGA
*
44145971 AGCCTCGCACACCATCGGTAAAAACTAGGCCCTTGGTCGTACGG
511 AGCCTCGCACACCATCGGTAAAAACAAGG-CCTTGGTCGTACGG
* ** ** * * * *
44146015 GAGCCTCGGGCACCATCGGTACCTCGGTGCTTCGATGTGCGGGTGCCTCGGGCACCATCGGCAAA
1 AAGCCTCGGGCACCATCGCAAAATAGGTCCTTCGATGTGCGAGAGCCTCGGGCACCATCGGCAAA
* * * ** * *
44146080 ATAGGCCCTTGGTTGTGTGAGAGCCTCGGCCACCATCGGGACCTAGGTGCTTGATGTGCGGGAGC
66 ATAGGCCCTTGGTTGTGTGAGAGCCTCGGACACCATCGGAAACTAGGCCCTTGATGTACAGGAGC
* *
44146145 CCTGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGTAACCTA
131 CCTCGACACCATCGACAAACTAGGCCCTTGGTCGTGC-AGAGCCTTAGGCACCATCGGTAACCTA
* * * *
44146210 TG-CCCTTGGTTGTGCGAGAGCCTCAGGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGAGCG
195 GGCCCCTTGGTCGTGCAAGAGCCTCAGGCACCATCGGCACCTGGGCACTCGGATGTGCGGGAGCG
* *
44146274 TCGGACACCATCGGCAAACTAGGCCCTTGGTCTTGTGGGAGCCTCGGGCACCATCGGCACCTTAG
260 TCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCACCTCAG
* * *
44146339 TGCTATGATGTGTGGGAGCCTCGGACAATGTCGGCATCCTAGGCCCTTGGTCGTGCGGGAGCCTC
325 TGCTATGATGTGCGGGAGCCTCGGACAATGTCGGCATCCTAGGCCATTAGTCGTGCGGGAGCCTC
* * *
44146404 GAGCACCATTGACACCTTGGTGCTTGGATGTATGGGAACCTCAGACACCATCAGAAACCTAGGCC
390 GAGCACCATCGACACCTTGGTGCTTGGATGTACGGGAACCTCAGACACCATCAGAAACCTAAGCC
* * * * * *
44146469 TTTGGTCGTGCGAGAGCCTCAAGTACCATCGGCAAACTAGG-CCTTTGG-TCGTGCAGAAGCCTC
455 CTTGATCGTGCGAGAGCCTCAAGCACCATCGAC-AACTAGGTCC-TCGGAT-GAGCAGAAGCCTC
** * *** * *
44146532 GGGCA-CATTCGG-CACCTCAATG-CTTGGAT-GTGCGG
517 GCACACCA-TCGGTAAAAACAAGGCCTTGG-TCGTACGG
* * * * *
44146567 AATCCTTGGGCACCATCAGCAAAATAGG-CCTTTGGTCGTGCGAGAGCCTC-GGCTACCGTCGG-
1 AAGCCTCGGGCACCATC-GCAAAATAGGTCCTTCGAT-GTGCGAGAGCCTCGGGC-ACCATCGGC
* ** ** *
44146629 GACCTAGGTGCTT-GTATGTGTGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTT-AGTCGTA
63 AAAATAGGCCCTTGGT-TGTGTGAGAGCCTCGGACACCATCGG-AAACTAGGCCCTTGA-T-GTA
* ** * * *
44146692 CAGGAG-CCTCGAGCATCATCGACAATTTAGGCTCTTGGTCGTGCAAGAGTCTTGGGCACCATCG
124 CAGGAGCCCTCGA-CACCATCGACAAACTAGGCCCTTGGTCGTGC-AGAGCCTTAGGCACCATCG
44146756 G
187 G
44146757 CACCTGGACG
Statistics
Matches: 620, Mismatches: 101, Indels: 45
0.81 0.13 0.06
Matches are distributed among these distances:
551 2 0.00
552 65 0.10
553 39 0.06
554 323 0.52
555 94 0.15
556 79 0.13
557 18 0.03
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (553 bp):
AAGCCTCGGGCACCATCGCAAAATAGGTCCTTCGATGTGCGAGAGCCTCGGGCACCATCGGCAAA
ATAGGCCCTTGGTTGTGTGAGAGCCTCGGACACCATCGGAAACTAGGCCCTTGATGTACAGGAGC
CCTCGACACCATCGACAAACTAGGCCCTTGGTCGTGCAGAGCCTTAGGCACCATCGGTAACCTAG
GCCCCTTGGTCGTGCAAGAGCCTCAGGCACCATCGGCACCTGGGCACTCGGATGTGCGGGAGCGT
CGGACACCATCGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCACCTCAGT
GCTATGATGTGCGGGAGCCTCGGACAATGTCGGCATCCTAGGCCATTAGTCGTGCGGGAGCCTCG
AGCACCATCGACACCTTGGTGCTTGGATGTACGGGAACCTCAGACACCATCAGAAACCTAAGCCC
TTGATCGTGCGAGAGCCTCAAGCACCATCGACAACTAGGTCCTCGGATGAGCAGAAGCCTCGCAC
ACCATCGGTAAAAACAAGGCCTTGGTCGTACGG
Found at i:44147992 original size:128 final size:127
Alignment explanation
Indices: 44144005--44148108 Score: 1563
Period size: 128 Copynumber: 32.1 Consensus size: 127
44143995 AGCCTCGGAT
* * * **
44144005 GTGCGGGAGCCTC-AGGCACCATCGGC-ACCT-GGCCGCTCGGAT-GTGCGGGAGCCTCGTACAC
1 GTGCGGGAGCCTCGA-GCACCATCGACAAACTAGGCC-CTTGG-TCGTGCGGGAGCCTCGGGCAC
* * * ** *
44144066 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGAGCTAGGA
63 CATC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGG-
44144131 T-
126 TC
* * * ** * *
44144132 GTGCGGGAGCCTTG-GACACCATCAACAAACTAGGCCCGTGGTCGTATGGGAGCGTTGGGCACCA
1 GTGCGGGAGCCTCGAG-CACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
** * * * * * * * * **
44144196 TCGGTACCTCGACGCTCGGAT-GTGCGGGAGCGTCGGACACCATCGACAAACTAGGCACTCAGTC
65 TCGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTC
* * * * * *
44144260 TTGCGGGAGCCTC-AGGCACCACCGGCTACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCA
1 GTGCGGGAGCCTCGA-GCACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * ** * * * *
44144324 TCG-ACATCTTGGTGCTTGAGT-GTACGGGAACCTCAGACACCATCGGCAACCTAGGCCCTTGAT
65 TCGCA-ACCTAGGCCCTTG-GTCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGT
44144387 C
127 C
** * * *** * * *
44144388 GTGCAAGAGCCTCGGGCACCATCGAC--ACTTAAGTGGTCGGAT-GAGCGGGAGCCTCGGACACC
1 GTGCGGGAGCCTCGAGCACCATCGACAAAC-TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
* * * * * * ** *
44144450 ATCGGCAAACTAGGCCCTTCGTCGTACGGGAGCCTCGGGCACCATCGGTACCTTGGTGCTTCGAT
64 ATC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTT-GGT
44144515 -
127 C
* * * * * * * * *
44144515 GTGCGGGTGCCTCGGGCACCATCGGCAAAAATAGGCCCTTGGTTGTGTGAGAGCCTCGGCCACAA
1 GTGCGGGAGCCTCGAGCACCATCGAC-AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
** ** * **
44144580 TCGGGACCTAGGTGCTTGGAT-GTGCGGGAGCC-CTGGACACCATCGACAAAGTAGGCCCTTGGT
65 TCGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GGACACCATCGGC-ACCTAGGCCCTTGGT
*
44144643 T
127 C
* ** * * * * *
44144644 GTGCGAGAGCCTC-AGGCACCATCGGTAACCTAGGCCATTGGTTGTGCGAGAGCCTCAGGCACCA
1 GTGCGGGAGCCTCGA-GCACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
** * * * * *
44144708 TCGGTACCTGGGCGCTCGGAT-GTGCGGGAGCGTCGGACACCATCGGCAAACTAGGCCCTTGGTC
65 TCGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTC
* ** * ** * * * * *
44144772 CTATGGGAGCCTCGGGCACCATCG-GTACCTCAGTG--CTATGAT-GTGTGGGAGCCTCGGACAA
1 GTGCGGGAGCCTCGAGCACCATCGACAAACT-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGGCAC
** * * * * * ** *
44144833 TGTCGGATCCTAGGCCCTTGATCGTGCGGGAGCCTC-GAGCACCATCGACACCTTGGTGCATGGA
63 CATCGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCACCTAGGCCCTTGG-
44144897 T-
126 TC
** * * * **
44144898 GTATGGGAACCTC-AGACACCATCAGA-AACCTAGGCCCTTGGTCGTGCGAGAGCCTCAAGCACC
1 GTGCGGGAGCCTCGAG-CACCATC-GACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * * * * ***
44144961 ATCGGCAAACTAGGCCTTTGGTCGTACGGGAGCCTCGGGCA-CATTCGGCACCTCGATGCTTGGA
64 ATC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCA-TCGGCACCTAGGCCCTTGG-
44145025 T-
126 TC
* * * * * * * *
44145026 GTGCAGAATCCTTGGGCACCATC-AGCAAAATAGGCCTTTGGTCGTGCGAGAGCCTC-GGCTACC
1 GTGCGGGAGCCTCGAGCACCATCGA-CAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC-ACC
* ** ** * * * *
44145089 GTCGGGACCTAGGTGCTTGGAT-GTGTGGGAGCCTCGGACATCATCGGCAAACTAGGCCCTTAGT
64 ATCGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGT
44145153 C
127 C
* * * * * *
44145154 GTACGGGAGCCTCGAGCACCATCGACAACCTAGACTCTTGGTCGTGCGAGAGTCTCGGGCACCAT
1 GTGCGGGAGCCTCGAGCACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * ** *
44145219 CGGC-ACCT-GGACGCTCAGAT-GTGCGGGAGCGTCGGACACCATCAACAAACTAGGCCCTTGGT
66 C-GCAACCTAGG-CCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGT
44145281 C
127 C
* * * * * ** * * * * ***
44145282 GTGCGGGAGCCTCGGGCACCATAGGC-ACCTCGGTGCTATGAT-GTGCAGGAGCATCGGACAATG
1 GTGCGGGAGCCTCGAGCACCATCGACAAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCA
* * * * ** * **
44145345 TCGACATCCTCGGCCCTTGGTCGTGCTGAAGCCTC-GAGCACCATCTACACCTTGGTGCTTGGAT
65 TCG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCACCTAGGCCCTTGG-T
44145409 -
127 C
* ** * **
44145409 GTGCGGGAACCTCG-GACACCATCGA-AAACCTAGGTGCTTGGAT-ATGCGAAAGCCTCGGGCAC
1 GTGCGGGAGCCTCGAG-CACCATCGACAAA-CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
* * * * * * ** *
44145471 AATCGGCAAACTAGGCCATTGGTCGTGCAGGAGCCACGGGCACCATCGGCAAAATAGGCCATTGG
63 CATC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGG
44145536 TC
126 TC
* * * * ** * * *
44145538 GTACGAGAGCTTCG-GCCACCATTG-GGACCTTAGTG--CTTGGAT-GTGCGGAAGCCTCGGACA
1 GTGCGGGAGCCTCGAG-CACCATCGACAAAC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * * * * *
44145598 CCATCGACAAACTATGCCCTTGGTTGTGCAGGAGCCTTAGG-CATCATCGGTAACCTAGGCCCCT
62 CCATCG-CAACCTAGGCCCTTGGTCGTGCGGGAGCC-TCGGACACCATCGG-CACCTAGG-CCCT
44145662 TGGTC
123 TGGTC
*** * * * * * * * *
44145667 GTGTAAGAGCCTCGGGCACCATCGGC-AGCTGGGCACTCGGAT-GTGCGGGAGCGTCGGACACCA
1 GTGCGGGAGCCTCGAGCACCATCGACAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
* * * * * ** *
44145730 TCGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATTGGCACCTCGGTGCTATGAT-
65 TC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCT-TGGTC
* * ** * * * *
44145794 GTGCGGGAGCCTCG-G-ACAATGTCGGCATCCTAGGGCATTAGTCGTGCGGGAGCCTCGAGCACC
1 GTGCGGGAGCCTCGAGCACCA--TCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* ** * * *
44145857 ATCG-ACACCTTGGTGCTTGGAT-GTGCGGGAACCTCGGACACCATCGGCAACCTAAGCCCTTGA
64 ATCGCA-ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGG
44145920 TC
126 TC
* * * ** * * **
44145922 GTGCGAGAGCCTCGGGCACCATCGAC-ACCTAGGTGCTCGGAT-GAGCGGGAGCCTCGCACACCA
1 GTGCGGGAGCCTCGAGCACCATCGACAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
* * * * * * ** *
44145985 TCGGTAAAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGTACCTCGGTGCTTCGA
65 TC-G--CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTT-GG
44146050 T-
126 TC
* * * * * * * *
44146051 GTGCGGGTGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTTGTGTGAGAGCCTCGGCCACCAT
1 GTGCGGGAGCCTCGAGCACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
** ** * * *
44146116 CGGGACCTAGGTGCTTGAT-GTGCGGGAGCC-CTGGACACCATCGACAAACTAGGCCCTTGGTC
66 CGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGC-ACCTAGGCCCTTGGTC
* ** * * * * *
44146178 GTGCGAGAGCCTC-AGGCACCATCGGTAACCTATGCCCTTGGTTGTGCGAGAGCCTCAGGCACCA
1 GTGCGGGAGCCTCGA-GCACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * *
44146242 TCGGC-ACCTGGGCGCTCGGAT-GTGCGGGAGCGTCGGACACCATCGGCAAACTAGGCCCTTGGT
65 TC-GCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGT
44146305 C
127 C
* * * * * * * * *
44146306 TTGTGGGAGCCTCGGGCACCATCGGC-ACCTTAGTG--CTATGAT-GTGTGGGAGCCTCGGACAA
1 GTGCGGGAGCCTCGAGCACCATCGACAAAC-TAG-GCCCT-TGGTCGTGCGGGAGCCTCGGGCAC
** * * * * **
44146367 TGTCGGCATCCTAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATTGACACCTTGGTGCTTGG
63 CATC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCACCTAGGCCCTTGG
44146431 AT-
126 -TC
** * * * * ** *
44146433 GTATGGGAACCTC-AGACACCATCAGA-AACCTAGGCCTTTGGTCGTGCGAGAGCCTCAAGTACC
1 GTGCGGGAGCCTCGAG-CACCATC-GACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * * * * *
44146496 ATCGGCAAACTAGGCCTTTGGTCGTGCAGAAGCCTCGGGCA-CATTCGGCACCTCAATG--CTTG
64 ATC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCA-TCGGCACCT--AGGCCCTTG
44146558 GAT-
125 G-TC
* * * * * * *
44146561 GTGCGGAATCCTTGGGCACCATC-AGCAAAATAGGCCTTTGGTCGTGCGAGAGCCTC-GGCTACC
1 GTGCGGGAGCCTCGAGCACCATCGA-CAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC-ACC
* ** ** * * * *
44146624 GTCGGGACCTAGGTGCTT-GTATGTGTGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTAGT
64 ATCGCAACCTAGGCCCTTGGT-CGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGT
44146688 C
127 C
* * * ** * ** * *
44146689 GTACAGGAGCCTCGAGCATCATCGACAATTTAGGCTCTTGGTCGTGCAAGAGTCTTGGGCACCAT
1 GTGCGGGAGCCTCGAGCACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * ** *
44146754 CGGC-ACCT-GGACGCTCAGAT-GTGTGGGAGCGTCGGACACCATTAGCAAACTAGGCCCTTGGT
66 C-GCAACCTAGG-CCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGT
44146816 C
127 C
* * * * * * ** * * * * ***
44146817 GTGCGGGAGCCTCGGGTACCATAGGC-ACCTCGGTGCTATGAT-GTGCAGGAGCATCGGACAATG
1 GTGCGGGAGCCTCGAGCACCATCGACAAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCA
* * * * * **
44146880 TCGGCATCCTCGGCCCTTGGTCGTGCTGAAGCCTC-GAGCACCATCGGCACCTTGGTGCTTGGAT
65 TC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCACCTAGGCCCTTGG-T
44146944 -
127 C
* * ** **
44146944 GTGCGGGAACCTCG-GACACCATCGGA-AACCTAGGTGCTTGGAT-GTGCGAAAGCCTCGGGCAC
1 GTGCGGGAGCCTCGAG-CACCATC-GACAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
* * * * * ** *
44147006 AATCGGCAAACTAGGCCCTTGGTCGTGCAGGAGCCACGGGCACCATCGGCAAAATAGGCCATTGG
63 CATC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGG
44147071 TC
126 TC
* * * * ** * * **
44147073 GTACGAGAGCTTCG-GCCACCATTG-GGACCTTAGTG--CTTGGAT-GTGCGGAAGCCTCGAACA
1 GTGCGGGAGCCTCGAG-CACCATCGACAAAC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * * * *
44147133 CCATCGACAAACTATGCCCTTGGTTGTGCAGGAACCTCAGG-CATCATCGGCAACCTAGGCCCCT
62 CCATCG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGC-ACCTAGG-CCCT
44147197 TGGTC
123 TGGTC
** * * * * * * * **
44147202 GTGCAAGAGCCTCG-GACACCATCGGC-AGCTGGGCGCTCGGAT-GTGCGGGA-CTGTTGAACAC
1 GTGCGGGAGCCTCGAG-CACCATCGACAAACTAGGCCCTTGG-TCGTGCGGGAGC-CTCGGGCAC
* * *
44147263 CATCGACAAACTAGGCCCTTGGTCGTGTGGGAGCCTCAGG-CACCATTGGCACCTCAGTG--CTA
63 CATCG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCACCT-AG-GCCCT-
*
44147325 TGAT-
123 TGGTC
* * ** *
44147329 GTGCGGGAGCCTCG-G-ACAATGTCGGCATCCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACC
1 GTGCGGGAGCCTCGAGCACCA--TCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* ** *
44147392 ATCG-ACACCTTGGTGCTTGGAT-GTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGG
64 ATCGCA-ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGG
44147455 TC
126 TC
* * * ** * *
44147457 GTGCGGGATCCTCGAGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGGAACCTCGGACACCA
1 GTGCGGGAGCCTCGAGCACCATCGACAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
* * * *
44147520 TCGGCAACCTAGGCCCTTGGTCGTGCGAGG-GCCTTGGGCACCATCGGCAAACTATGCCCTTGGT
65 TC-GCAACCTAGGCCCTTGGTCGTGCG-GGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGT
44147584 C
127 C
* * ** * * ** **
44147585 GTGCGAGAGCCTCGGGCACCATCG-GTACCTCGGTACTTGGAT-GTGCGGGAGCCTCAAGCACCA
1 GTGCGGGAGCCTCGAGCACCATCGACAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
** * * * * **
44147648 TCGACAAAATCGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCAGG-ACCAAGGTGCTTGGAT
65 TCG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC-GGCACCTAGGCCCTTGG-T
44147712 -
127 C
* * **
44147712 GTACGAGAGCCTC-AGACACCATCGGGAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGAG-CACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
** * * * ** *
44147776 TCGACAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACTATCGGCACCTTGGCGGTCGGAT-
65 TCG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGG-TC
*
44147840 GTGCGGGAGCGTCG-GACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGAG-CACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
** * ** * ***
44147904 TCGGTACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACAATGTCGGCATCCTAGGCCCTTGGTC
65 TCGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCA-CCTAGGCCCTTGGTC
* * ** * *
44147968 GTGGGGGAGCCTCGAGCACCATCGAC-ACCGT-GGTGCTTGGAT-GTGCGGGAACCTCGGACACC
1 GTGCGGGAGCCTCGAGCACCATCGACAAAC-TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
* * * * * *
44148030 ATCGGCAACCCAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTACCTAGGCACTCGGAT
64 ATC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGG-T
44148095 -
127 C
44148095 GTGCGGGAGCCTCG
1 GTGCGGGAGCCTCG
44148109 GATGCCACCG
Statistics
Matches: 3007, Mismatches: 759, Indels: 422
0.72 0.18 0.10
Matches are distributed among these distances:
125 9 0.00
126 77 0.03
127 821 0.27
128 1652 0.55
129 371 0.12
130 76 0.03
131 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.20
Consensus pattern (127 bp):
GTGCGGGAGCCTCGAGCACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTC
Found at i:44147992 original size:213 final size:212
Alignment explanation
Indices: 44144001--44148076 Score: 1929
Period size: 213 Copynumber: 19.1 Consensus size: 212
44143991 CGGCAGCCTC
* * * *
44144001 GGATGTGCGGGAGCCTCAGG-CACCATCGGC-ACCT-GGCCGCTCGGAT-GTGCGGGAGCCTCGT
1 GGATGTGCGGGAGCCTC-GGACACCATCGACAAACTAGGCC-CTTGG-TCGTGCGGGAGCCTCGG
* ** * * * * **
44144062 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGAGC
63 GCACCATCGGC-ACCTAGGTGCTTGAT-GTGCGGGAGCCTCGGACAACATCGGCAACCTAGGCCC
* * ** * * ** ** * *
44144126 TAGGAT-GTGCGGGAGCCTTG-GACACCATCAACAAACTAGGCCCGTGGTCGTATGGGAGCGTTG
126 TTGG-TCGTGCGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCG
* * * *
44144189 GGCACCATCGGTACCTCGACGCTC
189 GGCACCATCGGCACCTAGGCGCTT
* * ** * *
44144213 GGATGTGCGGGAGCGTCGGACACCATCGACAAACTAGGCACTCAGTCTTGCGGGAGCCTCAGGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * * * * * **
44144278 CCACCGGCTACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCGAC-ATCTTGGTGCTT
66 CCATCGGC-ACCTAGGTGCTTGAT-GTGCGGGAGCCTCGGA-CAACATCGGCAACCTAGGCCCTT
* * *
44144341 GAGT-GTACGGGAACCTC-AGACACCATCGGCAACCTAGGCCCTTGATCGTGC-AAGAGCCTCGG
128 G-GTCGTGCGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAA-AGCCTCGG
* * * * * *
44144403 GCACCATCGACACTTAAGTGGTC
190 GCACCATCGGCACCTAGGCGCTT
* * * *
44144426 GGATGAGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTCGTCGTACGGGAGCCTCGGGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * **
44144491 CCATCGGTACCTTGGTGCTTCGATGTGCGGGTGCCTCGGGCACCATCGGCAAAAATAGGCCCTTG
66 CCATCGGCACCTAGGTGCTT-GATGTGCGGGAGCCTCGGACAACATCGGC-AACCTAGGCCCTTG
* * * * * ** ** *
44144556 GTTGTGTGAGAGCCTCG-GCCACAATCGG-GACCTAGGTGCTTGGAT-GTGCGGGAGCC-CTGGA
129 GTCGTGCGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAAAGCCTC-GGG
* ** *
44144617 CACCATCGACAAAGTAGGCCCTT
191 CACCATCGGC-ACCTAGGCGCTT
* * ** * * * * *
44144640 GGTTGTGCGAGAGCCTCAGG-CACCATCGGTAACCTAGGCCATTGGTTGTGCGAGAGCCTCAGGC
1 GGATGTGCGGGAGCCTC-GGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * * * * * *
44144704 ACCATCGGTACCTGGGCGCTCGGATGTGCGGGAGCGTCGGACACCATCGGCAAACTAGGCCCTTG
65 ACCATCGGCACCTAGGTGCT-TGATGTGCGGGAGCCTCGGACAACATCGGCAACCTAGGCCCTTG
* ** * * * * ** *
44144769 GTCCTATGGGAGCCTCGGGCACCATCGG-TACCTCAGTG--CTATGAT-GTGTGGGAGCCTCGGA
129 GTCGTGCGGGAGCCTCGAGCACCATCGGCAACCT-AG-GCCCT-TGGTCGTGCGAAAGCCTCGGG
*** *
44144830 CAATGTCGG-ATCCTAGGCCCTT
191 CACCATCGGCA-CCTAGGCGCTT
* * ** * ** * *
44144852 -GATCGTGCGGGAGCCTC-GAGCACCATCGAC-ACCTTGGTGCATGGAT-GTATGGGAACCTCAG
1 GGAT-GTGCGGGAGCCTCGGA-CACCATCGACAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* ** ** * * * * *
44144913 ACACCATCAGAAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-AAGCACCATCGGCAAACTAGGCC
63 GCACCATC-GGCACCTAGGTGCTTGAT-GTGCGGGAGCCTCGGA-CAACATCGGCAACCTAGGCC
* * * * *** *
44144977 TTTGGTCGTACGGGAGCCTCGGGCA-CATTCGGC-ACCTCGATGCTTGGAT-GTGC-AGAATCCT
125 CTTGGTCGTGCGGGAGCCTCGAGCACCA-TCGGCAACCTAGGCCCTTGG-TCGTGCGA-AAGCCT
* * **
44145038 TGGGCACCATCAGCAAAATAGGC-CTTT
187 CGGGCACCATCGGC-ACCTAGGCGC-TT
* * ** * ** *
44145065 GG-TCGTGCGAGAGCCTCGG-CTACCGTCG-GGACCTAGGTGCTTGGAT-GTGTGGGAGCCTCGG
1 GGAT-GTGCGGGAGCCTCGGAC-ACCATCGACAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* * * ** * * * *
44145126 ACATCATCGGCAAACTAGGCCCTT-AGTCGTACGGGAGCCTC-GAGCACCATCGACAACCTAGAC
63 GCACCATCGGC-ACCTAGGTGCTTGA-T-GTGCGGGAGCCTCGGA-CAACATCGGCAACCTAGGC
* * * * * * * ** *
44145189 TCTTGGTCGTGCGAGAGTCTCGGGCACCATCGGC-ACCT-GGACGCTCAGAT-GTGCGGGAGCGT
124 CCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGG-CCCT-TGGTCGTGCGAAAGCCT
* ** * *
44145251 CGGACACCATCAACAAACTAGGCCCTT
187 CGGGCACCATCGGC-ACCTAGGCGCTT
* * * * * ** * * * *
44145278 GG-TCGTGCGGGAGCCTCGGGCACCATAGGC-ACCTCGGTGCTATGAT-GTGCAGGAGCATCGGA
1 GGAT-GTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGG
*** * * ** * * * * ** * **
44145340 CAATGTCGACATCCTCGGCCCTTGGTCGTGCTGAAGCCTC-GAGCACCATCTAC-ACCTTGGTGC
64 CACCATCGGCA-CCTAGGTGCTTGAT-GTGCGGGAGCCTCGGA-CAACATCGGCAACCTAGGCCC
* ** ** *
44145403 TTGGAT-GTGCGGGAACCTCG-GACACCATCGAAAACCTAGGTGCTTGGAT-ATGCGAAAGCCTC
126 TTGG-TCGTGCGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAAAGCCTC
* *
44145465 GGGCACAATCGGCAAACTAGGC-CATT
188 GGGCACCATCGGC-ACCTAGGCGC-TT
* * * * * * * * * *
44145491 GG-TCGTGCAGGAGCCACGGGCACCATCGGCAAAATAGGCCATTGGTCGTACGAGAGCTTCGGCC
1 GGAT-GTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * * * * * *
44145555 ACCATTGGGACCTTA-GTGCTTGGATGTGCGGAAGCCTCGGACACCATCGACAAACTATGCCCTT
65 ACCATCGGCACC-TAGGTGCTT-GATGTGCGGGAGCCTCGGACAACATCGGCAACCTAGGCCCTT
* * * * * *
44145619 GGTTGTGCAGGAGCCT-TAGGCATCATCGGTAACCTAGGCCCCTTGGTCGTG-TAAGAGCCTCGG
128 GGTCGTGCGGGAGCCTCGA-GCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGAA-AGCCTCGG
* * * *
44145682 GCACCATCGGCAGCTGGGCACTC
190 GCACCATCGGCACCTAGGCGCTT
* * *
44145705 GGATGTGCGGGAGCGTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** * * * *
44145770 CCATTGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACAATGTCGGCATCCTAGGGCATTAG
66 CCATCGGCACCTAGGTGCT-TGATGTGCGGGAGCCTCGGACAACATCGGCAACCTAGGCCCTTGG
* * ** * *
44145835 TCGTGCGGGAGCCTCGAGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGGAA-CCTCGGACA
130 TCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGG-TCGTGC-GAAAGCCTCGGGCA
* *
44145897 CCATCGGCAACCTAAGCCCTT
193 CCATCGGC-ACCTAGGCGCTT
* * * ** * * **
44145918 -GATCGTGCGAGAGCCTCGGGCACCATCGAC-ACCTAGGTGCTCGGAT-GAGCGGGAGCCTCGCA
1 GGAT-GTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * ** * * * * * * **
44145980 CACCATCGGTAAAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGG-TACCTCGGTG
64 CACCATCGG---CACCTAGGTGCTTGAT-GTGCGGGAGCCTCGGACAACATCGGCAACCTAGGCC
* * * ** * * *
44146044 CTTCGAT-GTGCGGGTGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTTGTGTGAGAGCCTCG
125 CTT-GGTCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCG
* * *
44146108 GCCACCATCGGGACCTAGGTGCTT
189 GGCACCATCGGCACCTAGGCGCTT
* *
44146132 -GATGTGCGGGAGCC-CTGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGAGAGCCTCAGGC
1 GGATGTGCGGGAGCCTC-GGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * ** * * * * *
44146195 ACCATCGGTAACCTATGCCCTTGGTTGTGCGAGAGCCTCAGG-CACCATCGGC-ACCTGGGCGCT
65 ACCATCGG-CACCTAGGTGCTT-GATGTGCGGGAGCCTC-GGACAACATCGGCAACCTAGGCCCT
* * * * * **
44146258 CGGAT-GTGCGGGAGCGTCG-GACACCATCGGCAAACTAGGCCCTTGGTCTTGTGGGAGCCTCGG
127 TGG-TCGTGCGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGG
*
44146321 GCACCATCGGCACCTTA-GTGCTAT
190 GCACCATCGGCACC-TAGGCGCT-T
* *** * ** *
44146345 -GATGTGTGGGAGCCTCGGACAATGTCGGCATCCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * ** * * * * * *
44146409 CCATTGACACCTTGGTGCTTGGATGTATGGGAACCTCAGACACCATCAGAAACCTAGGCCTTTGG
66 CCATCGGCACCTAGGTGCTT-GATGTGCGGGAGCCTCGGACAACATCGGCAACCTAGGCCCTTGG
* * * * *
44146474 TCGTGCGAGAGCCTCAAGTACCATCGGCAAACTAGGCCTTTGGTCGTGC-AGAAGCCTCGGGCA-
130 TCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-AAGCCTCGGGCAC
**
44146537 CATTCGGCACCTCA-ATGCTT
194 CA-TCGGCACCT-AGGCGCTT
* * * * * * *
44146557 GGATGTGCGGAATCCTTGGGCACCATC-AGCAAAATAGGCCTTTGGTCGTGCGAGAGCCTC-GGC
1 GGATGTGCGGGAGCCTCGGACACCATCGA-CAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * * * *
44146620 TACCGTCGGGACCTAGGTGCTTGTATGTGTGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTT
65 -ACCATCGGCACCTAGGTGCTTG-ATGTGCGGGAGCCTCGGACAACATCGGCAACCTAGGCCCTT
* * * * * ** * * *
44146685 AGTCGTACAGGAGCCTCGAGCATCATCGACAATTTAGGCTCTTGGTCGTGC-AAGAGTCTTGGGC
128 GGTCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAA-AGCCTCGGGC
*
44146749 ACCATCGGCACCT-GGACGCTC
192 ACCATCGGCACCTAGG-CGCTT
* * * * *
44146770 AGATGTGTGGGAGCGTCGGACACCAT-TAGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGT
1 GGATGTGCGGGAGCCTCGGACACCATCGA-CAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * * * ** * *
44146834 ACCATAGGCACCTCGGTGCTATGATGTGCAGGAGCATCGGACAATGTCGGCATCCTCGGCCCTTG
65 ACCATCGGCACCTAGGTGCT-TGATGTGCGGGAGCCTCGGACAACATCGGCAACCTAGGCCCTTG
* * * ** * *
44146899 GTCGTGCTGAAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAA-CCTCGGAC
129 GTCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGG-TCGTGC-GAAAGCCTCGGGC
* *
44146961 ACCATCGGAAACCTAGGTGCTT
192 ACCATCGG-CACCTAGGCGCTT
** * * * * *
44146983 GGATGTGCGAAAGCCTCGGGCACAATCGGCAAACTAGGCCCTTGGTCGTGCAGGAGCCACGGGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** * * * * * * * * *
44147048 CCATCGGCAAAATAGG-CCATTGGTCGTACGAGAGCTTCGGCCACCATTGG-GACCTTAGTG--C
66 CCATCGGC-ACCTAGGTGC-TTGAT-GTGCGGGAGCCTCGGACAACATCGGCAACC-TAG-GCCC
* * * * * * * *
44147109 TTGGAT-GTGCGGAAGCCTCGAACACCATCGACAAACTATGCCCTTGGTTGTGCAGGAA-CCTCA
126 TTGG-TCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGC-GAAAGCCTCG
* *
44147172 GGCATCATCGGCAACCTAGGCCCCTT
189 GGCACCATCGGC-ACCTAGG-CGCTT
** * * * * * * * *
44147198 GG-TCGTGCAAGAGCCTCGGACACCATCGGC-AGCTGGGCGCTCGGAT-GTGCGGGA-CTGTTGA
1 GGAT-GTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGG-TCGTGCGGGAGC-CTCGG
* * * ** * * * *
44147259 ACACCATCGACAAACTAGGCCCTTGGTCGTGTGGGAGCCTCAGG-CACCATTGGC-ACCTCAGTG
63 GCACCATCGGC-ACCTAGGTGCTTGAT-GTGCGGGAGCCTC-GGACAACATCGGCAACCT-AG-G
* * * **
44147322 --CTATGAT-GTGCGGGAGCCTCG-G-ACAATGTCGGCATCCTAGGCCCTTGGTCGTGCGGGAGC
123 CCCT-TGGTCGTGCGGGAGCCTCGAGCACCA--TCGGCAACCTAGGCCCTTGGTCGTGCGAAAGC
* * * *
44147382 CTCGAGCACCATCGACACCTTGGTGCTT
185 CTCGGGCACCATCGGCACCTAGGCGCTT
* * * * *
44147410 GGATGTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGATCCTCGAGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
44147475 CCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGG
66 CCATCGGCACCTAGGTGCTT-GATGTGCGGGAGCCTCGGACAACATCGGCAACCTAGGCCCTTGG
* * * * *
44147540 TCGTGCGAGG-GCCTTGGGCACCATCGGCAAACTATGCCCTTGGTCGTGCGAGAGCCTCGGGCAC
130 TCGTGCG-GGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCAC
* * **
44147604 CATCGGTACCTCGGTACTT
194 CATCGGCACCTAGGCGCTT
* * * * *
44147623 GGATGTGCGGGAGCCTC-AAGCACCATCGACAAAATCGGCCCTTGGTCGTGCGAGAGCCTCGGCC
1 GGATGTGCGGGAGCCTCGGA-CACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * * * * * *
44147687 ACCATCAGG-ACCAAGGTGCTTGGATGTACGAGAGCCTCAGACACCATCGGGAAACTAGGCCCTT
65 ACCATC-GGCACCTAGGTGCTT-GATGTGCGGGAGCCTCGGACAACATCGGCAACCTAGGCCCTT
* *
44147751 GGTCGTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCA
128 GGTCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCA
* * * *
44147816 CTATCGGCACCTTGGCGGTC
193 CCATCGGCACCTAGGCGCTT
*
44147836 GGATGTGCGGGAGCGTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
44147901 CCATCGGTACCTCGGTGCTATGATGTGCGGGAGCCTCGGACAATGTCGGCATCCTAGGCCCTTGG
66 CCATCGGCACCTAGGTGCT-TGATGTGCGGGAGCCTCGGACAACATCGGCAACCTAGGCCCTTGG
* * ** * *
44147966 TCGTGGGGGAGCCTCGAGCACCATCGAC-ACCGT-GGTGCTTGGAT-GTGCGGGAA-CCTCGGAC
130 TCGTGCGGGAGCCTCGAGCACCATCGGCAACC-TAGGCCCTTGG-TCGTGC-GAAAGCCTCGGGC
* *
44148027 ACCATCGGCAACCCAGGCCCTT
192 ACCATCGGC-ACCTAGGCGCTT
* *
44148049 GG-TCGTGCGAGAGCCTCGGGCACCATCG
1 GGAT-GTGCGGGAGCCTCGGACACCATCG
44148077 GTACCTAGGC
Statistics
Matches: 2992, Mismatches: 696, Indels: 351
0.74 0.17 0.09
Matches are distributed among these distances:
210 1 0.00
211 47 0.02
212 541 0.18
213 1665 0.56
214 612 0.20
215 126 0.04
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.20
Consensus pattern (212 bp):
GGATGTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
CCATCGGCACCTAGGTGCTTGATGTGCGGGAGCCTCGGACAACATCGGCAACCTAGGCCCTTGGT
CGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCA
TCGGCACCTAGGCGCTT
Found at i:44148110 original size:85 final size:85
Alignment explanation
Indices: 44144001--44148128 Score: 2059
Period size: 85 Copynumber: 48.4 Consensus size: 85
44143991 CGGCAGCCTC
* *
44144001 GGATGTGCGGGAGCCTCAGG-CACCATCGGC-ACCT-GGCCGCTCGGAT-GTGCGGGAGCCTCGT
1 GGATGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCC-CTTGG-TCGTGCGGGAGCCTCGG
* *
44144062 ACACCATCGGCAACCTAGGCCCTT
63 GCACCATCGG-AACCTAGGCGCTT
* * ** * * *
44144086 GG-TCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGAGCTAGGAT-GTGCGGGAGCCTTGGA
1 GGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
** * * *
44144148 CACCATCAACAAACTAGGCCCGT
64 CACCATC-GGAACCTAGGCGCTT
** * * * * * * * * * *
44144171 GG-TCGTATGGGAGCGTTGGGCACCATCGG-TACCTCGACGCTCGGAT-GTGCGGGAGCGTCGGA
1 GGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * * *
44144233 CACCATCGACAAACTAGGCACTC
64 CACCATCG-GAACCTAGGCGCTT
* * * * *
44144256 AG-TCTTGCGGGAGCCTCAGG-CACCACCGGCTACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG
1 GGAT-GTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * *
44144319 CACCATC-GACATCTTGGTGCTT
64 CACCATCGGA-ACCTAGGCGCTT
* * * * **
44144341 -GAGTGTACGGGAACCTCAGACACCATCGGCAACCTAGGCCCTTGATCGTGCAAGAGCCTCGGGC
1 GGA-TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * * * *
44144405 ACCATC-GACACTTAAGTGGTC
65 ACCATCGGA-ACCTAGGCGCTT
* * * *
44144426 GGATGAGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTCGTCGTACGGGAGCCTCGGGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
44144491 CCATCGGTACCTTGGTGCTT
66 CCATCGGAACCTAGGCGCTT
* * * ** * * * *
44144511 CGATGTGCGGGTGCCTCGGGCACCATCGGCAAAAATAGGCCCTTGGTTGTGTGAGAGCCTCGGCC
1 GGATGTGCGGGAGCCTCGGACACCATCGGC-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * *
44144576 ACAATCGGGACCTAGGTGCTT
65 ACCATCGGAACCTAGGCGCTT
* ** * * *
44144597 GGATGTGCGGGAGCC-CTGGACACCATCGACAAAGTAGGCCCTTGGTTGTGCGAGAGCCTCAGGC
1 GGATGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
44144661 ACCATCGGTAACCTAGGC-CATT
65 ACCATCGG-AACCTAGGCGC-TT
* * * * * * * *
44144683 GGTTGTGCGAGAGCCTCAGG-CACCATCGG-TACCTGGGCGCTCGGAT-GTGCGGGAGCGTCGGA
1 GGATGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* *
44144745 CACCATCGGCAAACTAGGCCCTT
64 CACCATCGG-AACCTAGGCGCTT
* ** * * * *
44144768 GG-TCCTATGGGAGCCTCGGGCACCATCGG-TACCTCAGTG--CTATGAT-GTGTGGGAGCCTCG
1 GGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCT-AG-GCCCT-TGGTCGTGCGGGAGCCTCG
* *** * *
44144828 GACAATGTCGGATCCTAGGCCCTT
62 GGCACCATCGGAACCTAGGCGCTT
* * ** * ** * *
44144852 -GATCGTGCGGGAGCCTC-GAGCACCATCGAC-ACCTTGGTGCATGGAT-GTATGGGAACCTCAG
1 GGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* * *
44144913 ACACCATCAGAAACCTAGGCCCTT
63 GCACCATC-GGAACCTAGGCGCTT
* * * * *
44144937 GG-TCGTGCGAGAGCCTC-AAGCACCATCGGCAAACTAGGCCTTTGGTCGTACGGGAGCCTCGGG
1 GGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * **
44145000 CA-CATTCGGCACCTCGATGCTT
64 CACCA-TCGGAACCTAGGCGCTT
* * * * * * ** * *
44145022 GGATGTGCAGAATCCTTGGGCACCATCAGCAAAATAGGCCTTTGGTCGTGCGAGAGCCTC-GGCT
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC-
* * *
44145086 ACCGTCGGGACCTAGGTGCTT
65 ACCATCGGAACCTAGGCGCTT
* * * * * *
44145107 GGATGTGTGGGAGCCTCGGACATCATCGGCAAACTAGGCCCTTAGTCGTACGGGAGCCTCGAGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
44145172 CCATCGACAACCTAGACTCTT
66 CCATCG-GAACCTAGGCGCTT
* * * * * * *
44145193 GG-TCGTGCGAGAGTCTCGGGCACCATCGGC-ACCT-GGACGCTCAGAT-GTGCGGGAGCGTCGG
1 GGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGG-CCCT-TGGTCGTGCGGGAGCCTCGG
* ** * *
44145254 ACACCATCAACAAACTAGGCCCTT
63 GCACCATC-GGAACCTAGGCGCTT
* * * ** * * * *
44145278 GG-TCGTGCGGGAGCCTCGGGCACCATAGGC-ACCTCGGTGCTATGAT-GTGCAGGAGCATCGGA
1 GGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGG
*** * *
44145340 CAATGTC-GACATCCTCGGCCCTT
64 CACCATCGGA-A-CCTAGGCGCTT
* * ** * ** *
44145363 GG-TCGTGCTGAAGCCTC-GAGCACCATCTAC-ACCTTGGTGCTTGGAT-GTGCGGGAACCTCGG
1 GGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* * *
44145424 ACACCATCGAAAACCTAGGTGCTT
63 GCACCATCG-GAACCTAGGCGCTT
* ** * * * * * *
44145448 GGATATGCGAAAGCCTCGGGCACAATCGGCAAACTAGGCCATTGGTCGTGCAGGAGCCACGGGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
**
44145513 CCATCGGCAAAATAGGC-CATT
66 CCATCGG-AACCTAGGCGC-TT
* * * * * * *
44145534 GG-TCGTACGAGAGCTTCGGCCACCATTGG-GACCTTAGTG--CTTGGAT-GTGCGGAAGCCTCG
1 GGAT-GTGCGGGAGCCTCGGACACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCG
* * * * *
44145594 GACACCATCGACAAACTATGCCCTT
62 GGCACCATCG-GAACCTAGGCGCTT
* * * * * ***
44145619 GGTTGTGCAGGAGCCTTAGG-CATCATCGGTAACCTAGGCCCCTTGGTCGTGTAAGAGCCTCGGG
1 GGATGTGCGGGAGCC-TCGGACACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGG
* * * * *
44145683 CACCATCGGCAGCTGGGCACTC
64 CACCATCGGAACCTAGGCGCTT
* * *
44145705 GGATGTGCGGGAGCGTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
44145770 CCATTGGCACCTCGGTGCTAT
66 CCATCGGAACCTAGGCGCT-T
*** * * * * *
44145791 -GATGTGCGGGAGCCTCGGACAATGTCGGCATCCTAGGGCATTAGTCGTGCGGGAGCCTCGAGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
44145855 CCATC-GACACCTTGGTGCTT
66 CCATCGGA-ACCTAGGCGCTT
* * * *
44145875 GGATGTGCGGGAACCTCGGACACCATCGGCAACCTAAGCCCTTGATCGTGCGAGAGCCTCGGGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
44145940 CCATC-GACACCTAGGTGCTC
66 CCATCGGA-ACCTAGGCGCTT
* * * * *
44145960 GGATGAGCGGGAGCCTCGCACACCATCGGTAAAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGG
1 GGATGTGCGGGAGCCTCGGACACCATCGG--CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * *
44146025 CACCATCGGTACCTCGGTGCTT
64 CACCATCGGAACCTAGGCGCTT
* * * ** * * * *
44146047 CGATGTGCGGGTGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTTGTGTGAGAGCCTCGGCCA
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
44146112 CCATCGGGACCTAGGTGCTT
66 CCATCGGAACCTAGGCGCTT
* * * *
44146132 -GATGTGCGGGAGCC-CTGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGAGAGCCTCAGGC
1 GGATGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* *
44146195 ACCATCGGTAACCTATGCCCTT
65 ACCATCGG-AACCTAGGCGCTT
* * * * * * *
44146217 GGTTGTGCGAGAGCCTCAGG-CACCATCGGC-ACCTGGGCGCTCGGAT-GTGCGGGAGCGTCGGA
1 GGATGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* *
44146279 CACCATCGGCAAACTAGGCCCTT
64 CACCATCGG-AACCTAGGCGCTT
* * * * *
44146302 GG-TCTTGTGGGAGCCTCGGGCACCATCGGC-ACCTTAGTG--CTATGAT-GTGTGGGAGCCTCG
1 GGAT-GTGCGGGAGCCTCGGACACCATCGGCAACC-TAG-GCCCT-TGGTCGTGCGGGAGCCTCG
* *** * *
44146362 GACAATGTCGGCATCCTAGGCCCTT
62 GGCACCATCGG-AACCTAGGCGCTT
* * * ** ** * *
44146387 GG-TCGTGCGGGAGCCTC-GAGCACCATTGAC-ACCTTGGTGCTTGGAT-GTATGGGAACCTCAG
1 GGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* *
44146448 ACACCATCAGAAACCTAGGC-CTTT
63 GCACCATC-GGAACCTAGGCGC-TT
* * * * * * *
44146472 GG-TCGTGCGAGAGCCTC-AAGTACCATCGGCAAACTAGGCCTTTGGTCGTGCAGAAGCCTCGGG
1 GGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* **
44146535 CA-CATTCGGCACCTCA-ATGCTT
64 CACCA-TCGGAACCT-AGGCGCTT
* * * * * ** * *
44146557 GGATGTGCGGAATCCTTGGGCACCATCAGCAAAATAGGCCTTTGGTCGTGCGAGAGCCTC-GGCT
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC-
* * *
44146621 ACCGTCGGGACCTAGGTGCTT
65 ACCATCGGAACCTAGGCGCTT
* * * * * * *
44146642 GTATGTGTGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTAGTCGTACAGGAGCCTCGAGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
44146707 TCATCGACAATTTAGGCTCTT
66 CCATCG-GAACCTAGGCGCTT
** * * * * * * * *
44146728 GG-TCGTGCAAGAGTCTTGGGCACCATCGGC-ACCT-GGACGCTCAGAT-GTGTGGGAGCGTCGG
1 GGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGG-CCCT-TGGTCGTGCGGGAGCCTCGG
* * * * *
44146789 ACACCATTAGCAAACTAGGCCCTT
63 GCACCA-TCGGAACCTAGGCGCTT
** * * ** * * * *
44146813 GG-TCGTGCGGGAGCCTCGGGTACCATAGGC-ACCTCGGTGCTATGAT-GTGCAGGAGCATCGGA
1 GGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGG
*** * * *
44146875 CAATGTCGGCATCCTCGGCCCTT
64 CACCATCGG-AACCTAGGCGCTT
* * * ** *
44146898 GG-TCGTGCTGAAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAACCTCGG
1 GGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* *
44146959 ACACCATCGGAAACCTAGGTGCTT
63 GCACCATCGG-AACCTAGGCGCTT
** * * * * *
44146983 GGATGTGCGAAAGCCTCGGGCACAATCGGCAAACTAGGCCCTTGGTCGTGCAGGAGCCACGGGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
**
44147048 CCATCGGCAAAATAGGC-CATT
66 CCATCGG-AACCTAGGCGC-TT
* * * * * * *
44147069 GG-TCGTACGAGAGCTTCGGCCACCATTGG-GACCTTAGTG--CTTGGAT-GTGCGGAAGCCTCG
1 GGAT-GTGCGGGAGCCTCGGACACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCG
** * * * *
44147129 AACACCATCGACAAACTATGCCCTT
62 GGCACCATCG-GAACCTAGGCGCTT
* * * * ** *
44147154 GGTTGTGCAGGAACCTCAGG-CATCATCGGCAACCTAGGCCCCTTGGTCGTGCAAGAGCCTCGGA
1 GGATGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGG
* * * *
44147218 CACCATCGGCAGCTGGGCGCTC
64 CACCATCGGAACCTAGGCGCTT
* * * * * * *
44147240 GGATGTGCGGGA-CTGTTGAACACCATCGACAAACTAGGCCCTTGGTCGTGTGGGAGCCTCAGGC
1 GGATGTGCGGGAGC-CTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * *
44147304 ACCATTGGCACCTCA-GTGCTAT
65 ACCATCGGAACCT-AGGCGCT-T
*** * *
44147326 -GATGTGCGGGAGCCTCGGACAATGTCGGCATCCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
44147390 CCATC-GACACCTTGGTGCTT
66 CCATCGGA-ACCTAGGCGCTT
* * *
44147410 GGATGTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGATCCTCGAGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
44147475 CCATC-GACACCTTGGTGCTT
66 CCATCGGA-ACCTAGGCGCTT
* *
44147495 GGATGTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGG-GCCTTGGGC
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GGAGCCTCGGGC
* * *
44147559 ACCATCGGCAAACTATGCCCTT
65 ACCATCGG-AACCTAGGCGCTT
* * * * ** **
44147581 GG-TCGTGCGAGAGCCTCGGGCACCATCGG-TACCTCGGTACTTGGAT-GTGCGGGAGCCTCAAG
1 GGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* ** * *
44147643 CACCATCGACAAAATCGGCCCTT
64 CACCATCG-GAACCTAGGCGCTT
* * * ** * * *
44147666 GG-TCGTGCGAGAGCCTCGGCCACCATCAGG--ACCAAGGTGCTTGGAT-GTACGAGAGCCTCAG
1 GGAT-GTGCGGGAGCCTCGGACACCATC-GGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* * *
44147727 ACACCATCGGGAAACTAGGCCCTT
63 GCACCATC-GGAACCTAGGCGCTT
* * **
44147751 GG-TCGTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGC
1 GGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * * * *
44147815 ACTATCGGCACCTTGGCGGTC
65 ACCATCGGAACCTAGGCGCTT
* * *
44147836 GGATGTGCGGGAGCGTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
44147901 CCATCGGTACCTCGGTGCTAT
66 CCATCGGAACCTAGGCGCT-T
*** * * *
44147922 -GATGTGCGGGAGCCTCGGACAATGTCGGCATCCTAGGCCCTTGGTCGTGGGGGAGCCTCGAGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
44147986 CCATC-GACACCGT-GGTGCTT
66 CCATCGGA-ACC-TAGGCGCTT
* * *
44148006 GGATGTGCGGGAACCTCGGACACCATCGGCAACCCAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
44148071 CCATCGGTACCTAGGCACTC
66 CCATCGGAACCTAGGCGCTT
** * *
44148091 GGATGTGCGGGAGCCTCGGATGCCACCGGCAAACTAGG
1 GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
44148129 GCCGGGTAAT
Statistics
Matches: 3148, Mismatches: 733, Indels: 324
0.75 0.17 0.08
Matches are distributed among these distances:
82 1 0.00
83 8 0.00
84 165 0.05
85 2264 0.72
86 579 0.18
87 130 0.04
88 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.20
Consensus pattern (85 bp):
GGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
CCATCGGAACCTAGGCGCTT
Found at i:44153321 original size:43 final size:42
Alignment explanation
Indices: 44153269--44153403 Score: 180
Period size: 43 Copynumber: 3.1 Consensus size: 42
44153259 CTCCGCACTG
**
44153269 TCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGTA
1 TCGGCACCTTGGTGGCTCGGATGTGC-GGAGCCTCGAGCACCA
44153312 TCGGCACCTTGGTGGCTCGGATGTGCGGAAGCCTCGAGCACCA
1 TCGGCACCTTGGTGGCTCGGATGTGCGG-AGCCTCGAGCACCA
* * * * *
44153355 TTGGCACCTTGGTGCCTCTGATCTGCGGGAGCCCCGAGCACCA
1 TCGGCACCTTGGTGGCTCGGATGTGC-GGAGCCTCGAGCACCA
44153398 TCGGCA
1 TCGGCA
44153404 ACTTTGGCCC
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
42 2 0.02
43 78 0.95
44 2 0.02
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.20
Consensus pattern (42 bp):
TCGGCACCTTGGTGGCTCGGATGTGCGGAGCCTCGAGCACCA
Found at i:44155062 original size:40 final size:40
Alignment explanation
Indices: 44154799--44155048 Score: 394
Period size: 40 Copynumber: 6.3 Consensus size: 40
44154789 TCCTCGTTCA
* * * * *
44154799 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
44154838 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
44154878 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
44154918 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
44154958 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
44154998 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
44155038 AAGGCCTTCGG
1 AATGCCTTCGG
44155049 ATCTTAGTCC
Statistics
Matches: 199, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
39 34 0.17
40 165 0.83
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:44155085 original size:40 final size:41
Alignment explanation
Indices: 44154881--44155190 Score: 170
Period size: 40 Copynumber: 7.5 Consensus size: 41
44154871 TCGCACGAAT
* * * * * * *
44154881 GCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATATTCACTTAGCACAAAG
* * * * * * *
44154921 GCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATATTCACTTAGCACAAAG
* * * * * * *
44154961 GCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATATTCACTTAGCACAAAG
* * * *
44155001 GCCTTCGGGACTTAACCCGGATTTAGT-A-TCTCGCACAAAG
1 GCCTTCGGGACTTAGCCCGGATATATTCACT-TAGCACAAAG
* *
44155041 GCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCACAAA-
1 GCCTTCGGGA-CTTAGCCCGGATATATTCACTTAGCACAAAG
* * *
44155081 GCCTTCGGGACTTAGCCCGGACAGCATTCAATTAATCATTCGCACAAAG
1 GCCTTCGGGACTTAGCCCGG--A-TA-T--ATTCA-C-TTAGCACAAAG
**
44155130 GCCTTC-GGATCTTAATCCGGATATATTCACTTAGCACAAA-
1 GCCTTCGGGA-CTTAGCCCGGATATATTCACTTAGCACAAAG
44155170 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
44155191 CAGCATTCAA
Statistics
Matches: 232, Mismatches: 21, Indels: 34
0.81 0.07 0.12
Matches are distributed among these distances:
39 4 0.02
40 163 0.70
41 23 0.10
42 3 0.01
43 5 0.02
44 1 0.00
45 1 0.00
46 4 0.02
47 2 0.01
48 12 0.05
49 14 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATATTCACTTAGCACAAAG
Found at i:44155085 original size:80 final size:79
Alignment explanation
Indices: 44154797--44155190 Score: 344
Period size: 80 Copynumber: 4.8 Consensus size: 79
44154787 GCTCCTCGTT
* * * * * * *
44154797 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCA-CACAATGCCTTCGGGACATAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACT-AGCACAATGCCTTCGGGACTTAACCCGG
*
44154861 ATTTAACAACTCGCA
65 ATTTAATAACTCGCA
* * * *
44154876 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCAC-AATGCCTTCGGGACTTAACCCGG
44154941 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * * *
44154956 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCAC-AATGCCTTCGGGACTTAACCCGG
* *
44155021 ATTTAGTATCTCGCA
65 ATTTAATAACTCGCA
** * ** * *
44155036 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCACAATGCCTTCGGGACTTAACCC-
*
44155100 GACAGCATTCAATTAATCATTCGCA
63 G---G-ATTTAA-TAA-C--TCGCA
* * * * *
44155125 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCACAATGCCTTCGGGACTTAACCCG
44155189 GA
64 GA
44155191 CAGCATTCAA
Statistics
Matches: 276, Mismatches: 26, Indels: 21
0.85 0.08 0.07
Matches are distributed among these distances:
79 37 0.13
80 156 0.57
81 6 0.02
84 2 0.01
85 5 0.02
86 2 0.01
87 1 0.00
88 1 0.00
89 66 0.24
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (79 bp):
CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCACAATGCCTTCGGGACTTAACCCGGA
TTTAATAACTCGCA
Found at i:44155085 original size:120 final size:119
Alignment explanation
Indices: 44154797--44155101 Score: 371
Period size: 120 Copynumber: 2.5 Consensus size: 119
44154787 GCTCCTCGTT
* * * * * * *
44154797 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCA-CACAATGCCTTCGGGACATAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACT-AGCACAATGCCTTCGGGACTTAACCCGG
44154861 ATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
65 ATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * * *
44154916 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCAC-AATGCCTTCGGGACTTAACCCGG
* * *
44154981 ATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
65 ATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
** * ** * *
44155036 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCACAATGCCTTCGGGACTTAACCCG
44155100 GA
64 GA
44155102 CAGCATTCAA
Statistics
Matches: 161, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
119 37 0.23
120 119 0.74
121 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:44155182 original size:89 final size:89
Alignment explanation
Indices: 44155031--44155208 Score: 338
Period size: 89 Copynumber: 2.0 Consensus size: 89
44155021 ATTTAGTATC
* *
44155031 TCGCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCGCTTAGCACAAAGCCTTCGGGACTTAG
1 TCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAG
44155096 CCCGGACAGCATTCAATTAATCAT
66 CCCGGACAGCATTCAATTAATCAT
44155120 TCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAG
1 TCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAG
44155185 CCCGGACAGCATTCAATTAATCAT
66 CCCGGACAGCATTCAATTAATCAT
44155209 GCACATCTAA
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (89 bp):
TCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAG
CCCGGACAGCATTCAATTAATCAT
Found at i:44157232 original size:85 final size:85
Alignment explanation
Indices: 44157107--44157444 Score: 357
Period size: 85 Copynumber: 4.0 Consensus size: 85
44157097 AGAGCCTCTA
* * * *
44157107 GCACCTTGGTGGCTTGGATTTGC-AGGAGCCTCGAACACCATCGGAACCTTGGTGGCTCAGATGA
1 GCACCTTGGT-GCTTGGATGTGCGA-GAGCCTCGAGCACCATCGGAACCTTGGTGGCTCGGATGT
*
44157171 GGGAAAGCCTCGAGCACCATCG
64 GGGAGAGCCTCGAGCACCATCG
* * *
44157193 GCACCTTGGTGCTCGGATGTGCTG-GAGCCTCG-GCCACCATCGACAACCTTGGTGCCT-GGATG
1 GCACCTTGGTGCTTGGATGTGC-GAGAGCCTCGAG-CACCATCG-GAACCTTGGTGGCTCGGATG
* * **
44157255 TGCGAGAGGCTCGAGCATAATCG
63 TGGGAGAGCCTCGAGCACCATCG
* * * *
44157278 GTACCTTGGTGCTTGTATGTGCGAGAGCCTCGAGCACCACCGGCACCTTGGTGGCTCGGATGTGC
1 GCACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGAACCTTGGTGGCTCGGATGTG-
* *
44157343 GG-GAGCCTTTGA-CACCATCA
65 GGAGAGCC-TCGAGCACCATCG
* * *
44157363 GCAACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGTACCTTGGT-GCTTGGATGTC
1 GC-ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGAACCTTGGTGGCTCGGATGTG
*
44157427 CGAGAGCCTCGAGCACCA
65 GGAGAGCCTCGAGCACCA
44157445 AAGCAAAAGT
Statistics
Matches: 207, Mismatches: 33, Indels: 25
0.78 0.12 0.09
Matches are distributed among these distances:
84 16 0.08
85 117 0.57
86 74 0.36
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (85 bp):
GCACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGAACCTTGGTGGCTCGGATGTGG
GAGAGCCTCGAGCACCATCG
Found at i:44157298 original size:42 final size:42
Alignment explanation
Indices: 44157109--44157444 Score: 338
Period size: 43 Copynumber: 7.9 Consensus size: 42
44157099 AGCCTCTAGC
* * *
44157109 ACCTTGGTGGCTTGGATTTGC-AGGAGCCTCGAACACCATCGGA
1 ACCTTGGT-GCTTGGATGTGCGA-GAGCCTCGAGCACCATCGGT
** * * * *
44157152 ACCTTGGTGGCTCAGATGAGGGAAAGCCTCGAGCACCATCGGC
1 ACCTTGGT-GCTTGGATGTGCGAGAGCCTCGAGCACCATCGGT
* **
44157195 ACCTTGGTGCTCGGATGTGCTG-GAGCCTCG-GCCACCATCGACA
1 ACCTTGGTGCTTGGATGTGC-GAGAGCCTCGAG-CACCATCG-GT
* * **
44157238 ACCTTGGTGCCTGGATGTGCGAGAGGCTCGAGCATAATCGGT
1 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGT
* * *
44157280 ACCTTGGTGCTTGTATGTGCGAGAGCCTCGAGCACCACCGGC
1 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGT
* * * **
44157322 ACCTTGGTGGCTCGGATGTGCGGGAGCCTTTGA-CACCATCAGCA
1 ACCTTGGT-GCTTGGATGTGCGAGAGCC-TCGAGCACCATC-GGT
44157366 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGT
1 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGT
*
44157408 ACCTTGGTGCTTGGATGTCCGAGAGCCTCGAGCACCA
1 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCA
44157445 AAGCAAAAGT
Statistics
Matches: 242, Mismatches: 41, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
41 1 0.00
42 108 0.45
43 119 0.49
44 14 0.06
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (42 bp):
ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGT
Found at i:44157349 original size:128 final size:127
Alignment explanation
Indices: 44157109--44157444 Score: 415
Period size: 128 Copynumber: 2.6 Consensus size: 127
44157099 AGCCTCTAGC
* * * * * ** ***
44157109 ACCTTGGTGGCTTGGATTTGC-AGGAGCCTCGAACACCATCGGAACCTTGGTGGCTCAGATGAGG
1 ACCTTGGT-GCCTGGATGTGCGA-GAGCCTCGAGCACAATCGGTACCTTGGT-GCTTGGATGTCC
* * * *
44157173 GAAAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCTGGAGCCTCGGCCACCATC-GAC
63 GAGAGCCTCGAGCACCACCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGGACACCATCAG-C
44157237 A
127 A
* * * *
44157238 ACCTTGGTGCCTGGATGTGCGAGAGGCTCGAGCATAATCGGTACCTTGGTGCTTGTATGTGCGAG
1 ACCTTGGTGCCTGGATGTGCGAGAGCCTCGAGCACAATCGGTACCTTGGTGCTTGGATGTCCGAG
**
44157303 AGCCTCGAGCACCACCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTTTGACACCATCAGCA
66 AGCCTCGAGCACCACCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGGACACCATCAGCA
* *
44157366 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGTACCTTGGTGCTTGGATGTCCGAG
1 ACCTTGGTGCCTGGATGTGCGAGAGCCTCGAGCACAATCGGTACCTTGGTGCTTGGATGTCCGAG
44157431 AGCCTCGAGCACCA
66 AGCCTCGAGCACCA
44157445 AAGCAAAAGT
Statistics
Matches: 180, Mismatches: 24, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
127 35 0.19
128 135 0.75
129 10 0.06
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (127 bp):
ACCTTGGTGCCTGGATGTGCGAGAGCCTCGAGCACAATCGGTACCTTGGTGCTTGGATGTCCGAG
AGCCTCGAGCACCACCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGGACACCATCAGCA
Found at i:44165511 original size:24 final size:24
Alignment explanation
Indices: 44165473--44165538 Score: 96
Period size: 24 Copynumber: 2.8 Consensus size: 24
44165463 GATTAGGTTC
*
44165473 CCGGCGATCCATCCCGGCGGTGCT
1 CCGGCGAACCATCCCGGCGGTGCT
*
44165497 CCGGCGAACCGTCCCGGCGGTGCT
1 CCGGCGAACCATCCCGGCGGTGCT
* *
44165521 CTGGCGAACCATTCCGGC
1 CCGGCGAACCATCCCGGC
44165539 CGCATAGGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.11, C:0.41, G:0.33, T:0.15
Consensus pattern (24 bp):
CCGGCGAACCATCCCGGCGGTGCT
Found at i:44165606 original size:42 final size:42
Alignment explanation
Indices: 44165559--44165709 Score: 196
Period size: 42 Copynumber: 3.6 Consensus size: 42
44165549 CTTGGTCGTG
44165559 CGGGAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATGTA
1 CGGGAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATGTA
* * * * ** *
44165601 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTA
1 CGGGAGCCTCGGGCACCATAGGC-ATCTTGGTGCTAGGAT-GTA
*
44165644 CGAGAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATGTA
1 CGGGAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATGTA
*
44165686 CGGGAGCCTCGGGCACCATCGGCA
1 CGGGAGCCTCGGGCACCATAGGCA
44165710 ACCTAGGCCC
Statistics
Matches: 89, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
42 56 0.63
43 33 0.37
ACGTcount: A:0.19, C:0.29, G:0.34, T:0.18
Consensus pattern (42 bp):
CGGGAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATGTA
Found at i:44165686 original size:85 final size:85
Alignment explanation
Indices: 44165543--44165837 Score: 439
Period size: 85 Copynumber: 3.5 Consensus size: 85
44165533 TCCGGCCGCA
*
44165543 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATGTACGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATGTACGGGAGC
44165608 CTCGGACACCATCGGCAACC
66 CTCGGACACCATCGGCAACC
*
44165628 TAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATGTACGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATGTACGGGAGC
*
44165693 CTCGGGCACCATCGGCAACC
66 CTCGGACACCATCGGCAACC
* * * * * * * *
44165713 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGGAAGT
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATGTACGGGAGC
* * *
44165778 CTCGCACACCATCGCCAAAC
66 CTCGGACACCATCGGCAACC
*
44165798 TAGGCCCTTGGTCGTGC-ACGAGCCTCGGGCACCATCGGCA
1 TAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATAGGCA
44165838 ACCTAGGCCC
Statistics
Matches: 193, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
84 1 0.01
85 192 0.99
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.18
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATGTACGGGAGC
CTCGGACACCATCGGCAACC
Found at i:44165751 original size:128 final size:127
Alignment explanation
Indices: 44165604--44166431 Score: 519
Period size: 128 Copynumber: 6.5 Consensus size: 127
44165594 GGATGTACGG
* * * * *
44165604 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATAGGCAT
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGCAC
* * *
44165669 CTTGGTGCTAGGATGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
65 CTAGGTGCTAGGATGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
** * * * * *
44165732 GAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAAT-GTGCG-GAAGTCTCGCACACCATCGCCA
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTG-GTCGTGCGAG-AGCCTCGGACACCATCGGC-
* ** * *
44165795 AACTAGGCCCTTGG-TCGTGC-ACGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCCTGC
63 ACCTAGGTGCTAGGAT-GTGCGA-GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
44165858 GA
126 GA
* * * * * * **
44165860 GAGCTTCGGGCACCA-CTGGCACCTGGGCACTCGAAT-GTGCGGGAGCCTCAAACACCATCGGCA
1 GAGCCTCGGGCACCATC-GGCACCTAGGCCCTTG-GTCGTGCGAGAGCCTCGGACACCATCGGC-
** * * * * * *
44165923 ACCTAGGCCCTTGG-TCGTGCGAAAGCCTCGGGCACCATCAGC-ACCTAGGCGCTCGAAT-GTGC
63 ACCTAGGTGCTAGGAT-GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-GTCGTGC
44165985 GA
126 GA
* * * * *
44165987 GAGCCTCGGACACCATCGACAAACC-AGGCCCGTGGTCGTGC-AGGACCCTCGGACACGATCGGC
1 GAGCCTCGGGCACCATCGGC--ACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGACACCATCGGC
* * * * * * * *
44166050 ACCT-GAGTGCTCGGATGTGCGGGAGCGTCGGACACCATCGACAAACTCGGCCCTTGGTCTTGCG
63 ACCTAG-GTGCTAGGATGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
44166114 G
127 A
*
44166115 GAGACTCGGGCACCATCGGCTACCTAGGCCCTTGGTCGTGC-AGGAGCCTCAGG-CACCATCGGC
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGA-GAGCCTC-GGACACCATCGGC
* * * *** * * * * *
44166178 ACCTCGGTGCTATGATGTGCGAGAGCCTCGGCCAATGTCAGCATCTTAGGCCCTTGGTCATG-TA
63 ACCTAGGTGCTAGGATGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
* * * * ** * * *
44166242 GAAGCCTCGAGAACCATCGACACCTTGGTGCTTGGAT-GTGCGAGAACTTCAGACACCATCGGCA
1 G-AGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGACACCATCGGC-
** * ** *
44166306 ACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGGGCTTCGAT-GTGC
63 ACCTAGGTGCTAGGAT-GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGC
44166368 -A
126 GA
* * * * * * *
44166369 GAAGGCTCAGACACAATCGGCAAACTAAGCCCTTGGTCGTGCG-GAAGCCTCGGGCACCATCGG
1 G-AGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAG-AGCCTCGGACACCATCGG
44166432 TAGAATAGGC
Statistics
Matches: 539, Mismatches: 129, Indels: 64
0.74 0.18 0.09
Matches are distributed among these distances:
126 3 0.01
127 154 0.29
128 374 0.69
129 8 0.01
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (127 bp):
GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGCACC
TAGGTGCTAGGATGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
Found at i:44165906 original size:85 final size:85
Alignment explanation
Indices: 44165817--44166208 Score: 368
Period size: 85 Copynumber: 4.6 Consensus size: 85
44165807 GGTCGTGCAC
* * *
44165817 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCCTGCGAGAGCTTCGGGCACCA-CTGGCA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC-GGCA
* *
44165881 CCTGGGCACTCGAATGTGCGG
65 CCTAGGCGCTCGAATGTGCGG
** * *
44165902 GAGCCTCAAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCAGCAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
*
44165967 CTAGGCGCTCGAATGTGCGA
66 CTAGGCGCTCGAATGTGCGG
* * * * *
44165987 GAGCCTCGGACACCATCGACAAACC-AGGCCCGTGGTCGTGC-AGGACCCTCGGACACGATCGGC
1 GAGCCTCGGACACCATCGGC-AACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCGGC
* *
44166050 ACCT-GAGTGCTCGGATGTGCGG
64 ACCTAG-GCGCTCGAATGTGCGG
* * * * * * *
44166072 GAGCGTCGGACACCATCGACAAACTCGGCCCTTGGTCTTGCGGGAGACTCGGGCACCATCGGCTA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-A
* * * *
44166137 CCTAGGCCCTTG-GTCGTGCAG
65 CCTAGGCGCTCGAAT-GTGCGG
* ** *
44166158 GAGCCTCAGG-CACCATCGGC-ACCTCGGTGCTATGAT-GTGCGAGAGCCTCGG
1 GAGCCTC-GGACACCATCGGCAACCTAGGCCCT-TGGTCGTGCGAGAGCCTCGG
44166209 CCAATGTCAG
Statistics
Matches: 250, Mismatches: 46, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
84 5 0.02
85 206 0.82
86 36 0.14
87 3 0.01
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.16
Consensus pattern (85 bp):
GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
CTAGGCGCTCGAATGTGCGG
Found at i:44165908 original size:170 final size:170
Alignment explanation
Indices: 44165554--44165929 Score: 393
Period size: 170 Copynumber: 2.2 Consensus size: 170
44165544 AGGCCCTTGG
* * * * * *
44165554 TCGTGCGGGAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATGTACGGGAGCCTCGGACACCA
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTAGAATGTACGGAAGCCTCGCACACCA
* * * * ** *
44165619 TCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATG
66 TCGCCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATAGGCACCTAGGCCCTAGGATC
* * * *
44165684 TACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG
131 TACGAGAGCCTCGGGCACCATCGGCAACCTAGGCACTCGA
* * * *
44165724 TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGGAAGTCTCGCACACCA
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTAGAATGTACGGAAGCCTCGCACACCA
* * *
44165789 TCGCCAAACTAGGCCCTTGGTCGTGC-ACGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-
66 TCGCCAAACTAGGCCCTTGGTCGTACGA-GAGCCTCGGGCACCATAGGC-ACCTAGGCCCTAGGA
* * *
44165852 TCCTGCGAGAGCTTCGGGCACCA-CTGGC-ACCTGGGCACTCGAA
129 T-CTACGAGAGCCTCGGGCACCATC-GGCAACCTAGGCACTCG-A
***
44165895 T-GTGCGGGAGCCTCAAACACCATCGGCAACCTAGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG
44165930 CCCTTGGTCG
Statistics
Matches: 169, Mismatches: 31, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
169 1 0.01
170 131 0.78
171 37 0.22
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (170 bp):
TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTAGAATGTACGGAAGCCTCGCACACCA
TCGCCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATAGGCACCTAGGCCCTAGGATC
TACGAGAGCCTCGGGCACCATCGGCAACCTAGGCACTCGA
Found at i:44165971 original size:213 final size:213
Alignment explanation
Indices: 44165604--44166050 Score: 637
Period size: 213 Copynumber: 2.1 Consensus size: 213
44165594 GGATGTACGG
* *
44165604 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATAGGCAT
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCCTACGAGAGCCTCGGGCACCATAGGCAC
* ** * *** *
44165669 CTTGGTGCTAGGATGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGA
66 CTGGGCACTAGAATGTACGGGAGCCTCAAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAA
* * * *
44165734 GCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCG-GAAGTCTCGCACACCATCGCCAAAC
131 GCCTCGGGCACCATCAGCACCTAGGCGCTCGAATGTGCGAG-AGCCTCGCACACCATCGACAAAC
* *
44165798 TAGGCCCTTGGTCGTGCAC
195 CAGGCCCGTGGTCGTGCAC
* * *
44165817 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCCTGCGAGAGCTTCGGGCACCACT-GGCA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCCTACGAGAGCCTCGGGCACCA-TAGGCA
* *
44165881 CCTGGGCACTCGAATGTGCGGGAGCCTCAAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAA
65 CCTGGGCACTAGAATGTACGGGAGCCTCAAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAA
*
44165946 AGCCTCGGGCACCATCAGCACCTAGGCGCTCGAATGTGCGAGAGCCTCGGACACCATCGACAAAC
130 AGCCTCGGGCACCATCAGCACCTAGGCGCTCGAATGTGCGAGAGCCTCGCACACCATCGACAAAC
*
44166011 CAGGCCCGTGGTCGTGCAG
195 CAGGCCCGTGGTCGTGCAC
* *
44166030 GACCCTCGGACACGATCGGCA
1 GAGCCTCGGACACCATCGGCA
44166051 CCTGAGTGCT
Statistics
Matches: 206, Mismatches: 26, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
213 204 0.99
214 2 0.01
ACGTcount: A:0.20, C:0.34, G:0.30, T:0.16
Consensus pattern (213 bp):
GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCCTACGAGAGCCTCGGGCACCATAGGCAC
CTGGGCACTAGAATGTACGGGAGCCTCAAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAA
GCCTCGGGCACCATCAGCACCTAGGCGCTCGAATGTGCGAGAGCCTCGCACACCATCGACAAACC
AGGCCCGTGGTCGTGCAC
Found at i:44165993 original size:170 final size:170
Alignment explanation
Indices: 44165797--44166178 Score: 405
Period size: 170 Copynumber: 2.2 Consensus size: 170
44165787 CATCGCCAAA
* * * *
44165797 CTAGGCCCTTGGTCGTGCACGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCCTGC-GAG
1 CTAGGCCCTCGATCGTGCAGGAGCCTCGGGCACCATCGGCAACC-AGGCCCGTGGTCCTGCAG-G
* * * * * *
44165861 AGCTTCGGGCACCA-CTGGCACCTGGGCACTCGAATGTGCGGGAGCCTCAAACACCATCGGCAAC
64 ACCCTCGGACACCATC-GGCACCTGAGCACTCGAATGTGCGGGAGCCTCAAACACCATCGACAAA
*
44165925 CTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCAGC-AC
128 CTAGGCCCTTGGTCGTGCGAAAGACTCGGGCACCATCAGCTAC
* * * *
44165967 CTAGGCGCTCGAAT-GTGC-GAGAGCCTCGGACACCATCGACAAACCAGGCCCGTGGTCGTGCAG
1 CTAGGCCCTCG-ATCGTGCAG-GAGCCTCGGGCACCATCGGC-AACCAGGCCCGTGGTCCTGCAG
* ** * * **
44166030 GACCCTCGGACACGATCGGCACCTGAGTGCTCGGATGTGCGGGAGCGTCGGACACCATCGACAAA
63 GACCCTCGGACACCATCGGCACCTGAGCACTCGAATGTGCGGGAGCCTCAAACACCATCGACAAA
* * ** *
44166095 CTCGGCCCTTGGTCTTGCGGGAGACTCGGGCACCATCGGCTAC
128 CTAGGCCCTTGGTCGTGCGAAAGACTCGGGCACCATCAGCTAC
* * *
44166138 CTAGGCCCTTGGTCGTGCAGGAGCCTCAGGCACCATCGGCA
1 CTAGGCCCTCGATCGTGCAGGAGCCTCGGGCACCATCGGCA
44166179 CCTCGGTGCT
Statistics
Matches: 171, Mismatches: 33, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
170 131 0.77
171 39 0.23
172 1 0.01
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16
Consensus pattern (170 bp):
CTAGGCCCTCGATCGTGCAGGAGCCTCGGGCACCATCGGCAACCAGGCCCGTGGTCCTGCAGGAC
CCTCGGACACCATCGGCACCTGAGCACTCGAATGTGCGGGAGCCTCAAACACCATCGACAAACTA
GGCCCTTGGTCGTGCGAAAGACTCGGGCACCATCAGCTAC
Found at i:44166087 original size:298 final size:295
Alignment explanation
Indices: 44165543--44166431 Score: 985
Period size: 298 Copynumber: 3.0 Consensus size: 295
44165533 TCCGGCCGCA
* * * *
44165543 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATAGGCATCTTGGTGCTA-GGATGTACGGGAG
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATAGGCA-CCTGG-GC-ACTGATGTGCGGGAG
* * *
44165607 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCAT-AGGCATCT
63 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCA-GCACCT
* * *
44165671 TGGTGCTAGGATGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGC
127 TGGTGCTAGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGC
* * *
44165736 CTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGGAAGTC-TCGCACACCATCGCCAAACTA
192 CTCGGGCACCATCGGCACCTAGGTGCTCGGATGTGCGGAAG-CGTCGGACACCATCGACAAACTA
*
44165800 GGCCCTTGGTCGTGCACGAGCCTCGGGCACCATCGGCAACC
256 GGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAACC
* *
44165841 TAGGCCCTTGGTCCTGCGAGAGCTTCGGGCACCACT-GGCACCTGGGCACTCGAATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCA-TAGGCACCTGGGCACT-G-ATGTGCGGGAG
** *
44165905 CCTCAAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCAGCACCTA
63 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCAGCACCTT
* * * * * *
44165970 GGCGCTCGAATGTGCGAGAGCCTCGGACACCATCGACAAACC-AGGCCCGTGGTCGTGC-AGGAC
128 GGTGCTAGGATGTGCGAGAGCCTCGGACACCATCGGC-AACCTAGGCCCTTGGTCGTGCGA-GAG
* * *
44166033 CCTCGGACACGATCGGCACCT-GAGTGCTCGGATGTGCGGGAGCGTCGGACACCATCGACAAACT
191 CCTCGGGCACCATCGGCACCTAG-GTGCTCGGATGTGCGGAAGCGTCGGACACCATCGACAAACT
* * * *
44166097 CGGCCCTTGGTCTTGCGGGAGACTCGGGCACCATCGGCTACC
255 AGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAACC
* * *
44166139 TAGGCCCTTGGTCGTGC-AGGAGCCTCAGGCACCATCGGCACCTCGGTGCTA-TGATGTGCGAGA
1 TAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATAGGCACCT-GG-GC-ACTGATGTGCGGGA
* *** * * * * * * *
44166202 GCCTCGGCCAATGTCAGCATCTTAGGCCCTTGGTCATG-TAGAAGCCTCGAGAACCATC-GACAC
62 GCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-AAGCCTCGGGCACCATCAG-CAC
* * * *
44166265 CTTGGTGCTTGGATGTGCGAGAACTTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGA
125 CTTGGTGCTAGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGA
* * * * *
44166330 GCCTCGGGCACCATCGGCACCTAGGGGCTTC-GATGTGCAGAAG-GCTCAGACACAATCGGCAAA
190 GCCTCGGGCACCATCGGCACCTAGGTGC-TCGGATGTGCGGAAGCG-TCGGACACCATCGACAAA
*
44166393 CTAAGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCGG
253 CTAGGCCCTTGGTCGTGCGG-AGCCTCGGGCACCATCGG
44166432 TAGAATAGGC
Statistics
Matches: 497, Mismatches: 72, Indels: 44
0.81 0.12 0.07
Matches are distributed among these distances:
295 1 0.00
296 2 0.00
297 19 0.04
298 458 0.92
299 13 0.03
300 3 0.01
301 1 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (295 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATAGGCACCTGGGCACTGATGTGCGGGAGCCT
CGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCAGCACCTTGGT
GCTAGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG
GGCACCATCGGCACCTAGGTGCTCGGATGTGCGGAAGCGTCGGACACCATCGACAAACTAGGCCC
TTGGTCGTGCGGAGCCTCGGGCACCATCGGCAACC
Found at i:44166116 original size:213 final size:212
Alignment explanation
Indices: 44165607--44166208 Score: 592
Period size: 213 Copynumber: 2.8 Consensus size: 212
44165597 TGTACGGGAG
* * * * * * *
44165607 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCA-TAGGCATCT
1 CCTCGGACACCATCGGCAACCTAGG-CCTCGGTCCTGCGAGAGCGTCGGACACCACT-GACAACT
* ** * * * * ***
44165671 TGGTGCTAGGATGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGC
64 CGGCACTCGAATGTGCGGGAGACTCAAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGC
* * * *
44165736 CTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCG-GAAGTCTCGCACACCATCGCCAAACTA
129 CTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAG-AGCCTCGGACACCATCGACAAACCA
* *
44165800 GGCCCTTGGTCGTGCACGAG
193 GGCCCGTGGTCGTGCACGAC
* * * * * * *
44165820 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCCTGCGAGAGCTTCGGGCACCACTGGCACCTG
1 CCTCGGACACCATCGGCAACCTAGG-CCTCGGTCCTGCGAGAGCGTCGGACACCACTGACAACTC
* *
44165885 GGCACTCGAATGTGCGGGAGCCTCAAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCC
65 GGCACTCGAATGTGCGGGAGACTCAAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCC
* *
44165950 TCGGGCACCATCAGCACCTAGGCGCTCGAATGTGCGAGAGCCTCGGACACCATCGACAAACCAGG
130 TCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAGCCTCGGACACCATCGACAAACCAGG
*
44166015 CCCGTGGTCGTGCAGGAC
195 CCCGTGGTCGTGCACGAC
* * *
44166033 CCTCGGACACGATCGGC-ACCTGAGTG-CTCGGAT-GTGCGGGAGCGTCGGACACCA-TCGACAA
1 CCTCGGACACCATCGGCAACCT-AG-GCCTCGG-TCCTGCGAGAGCGTCGGACACCACT-GAC-A
* * * * *** *
44166094 ACTCGGCCCTTG-GTCTTGCGGGAGACTCGGGCACCATCGGCTACCTAGGCCCTTGGTCGTGC-A
61 ACTCGGCACTCGAAT-GTGCGGGAGACTCAAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
* * *
44166157 GGAGCCTCAGGCACCATCGGCACCTCGGTGCTATG-ATGTGCGAGAGCCTCGG
125 -GAGCCTCGGGCACCATCGGCACCTAGGTGCT-CGAATGTGCGAGAGCCTCGG
44166209 CCAATGTCAG
Statistics
Matches: 330, Mismatches: 49, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
211 1 0.00
212 29 0.09
213 296 0.90
214 4 0.01
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (212 bp):
CCTCGGACACCATCGGCAACCTAGGCCTCGGTCCTGCGAGAGCGTCGGACACCACTGACAACTCG
GCACTCGAATGTGCGGGAGACTCAAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCT
CGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAGCCTCGGACACCATCGACAAACCAGGC
CCGTGGTCGTGCACGAC
Found at i:44166231 original size:85 final size:84
Alignment explanation
Indices: 44166136--44166431 Score: 269
Period size: 85 Copynumber: 3.5 Consensus size: 84
44166126 ACCATCGGCT
44166136 ACCTAGGCCCTTGGTCGTGCAGGAGCCTCAGGCACCATCGGCACCTCGGTGCTAT-GATGTGCGA
1 ACCTAGGCCCTTGGTCGTGCAGGAGCCTC-GGCACCATCGGCACCTCGGTGCT-TGGATGTGCGA
* * * **
44166200 GAGCCTCGGCCAATGTCAGCA
64 GAACCTCAGACAACATCAGCA
* * * * * * * *
44166221 TCTTAGGCCCTTGGTCATGTAGAAGCCTCGAGAACCATCGACACCTTGGTGCTTGGATGTGCGAG
1 ACCTAGGCCCTTGGTCGTGCAGGAGCCTCG-GCACCATCGGCACCTCGGTGCTTGGATGTGCGAG
* * *
44166286 AACTTCAGACACCATCGGCA
65 AACCTCAGACAACATCAGCA
* * *
44166306 ACCTAGGCCCTTGGTCGTGC-GAGAGCCTCGGGCACCATCGGCACCTAGGGGCTTCGATGTGC-A
1 ACCTAGGCCCTTGGTCGTGCAG-GAGCCTC-GGCACCATCGGCACCTCGGTGCTTGGATGTGCGA
* *
44166369 GAAGGCTCAGAC-ACAATCGGCA
64 GAA-CCTCAGACAAC-ATCAGCA
* *
44166391 AACTAAGCCCTTGGTCGTGC-GGAAGCCTCGGGCACCATCGG
1 ACCTAGGCCCTTGGTCGTGCAGG-AGCCTC-GGCACCATCGG
44166432 TAGAATAGGC
Statistics
Matches: 173, Mismatches: 31, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
84 9 0.05
85 163 0.94
86 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (84 bp):
ACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCACCATCGGCACCTCGGTGCTTGGATGTGCGAGA
ACCTCAGACAACATCAGCA
Found at i:44166281 original size:213 final size:212
Alignment explanation
Indices: 44165693--44166354 Score: 526
Period size: 213 Copynumber: 3.1 Consensus size: 212
44165683 GTACGGGAGC
* * *
44165693 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAG
1 CTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAAAGCCTCAGGCACCATCAGCACCTAG
* * * * * * * * *
44165758 GTGCTCGAATGTGCG-GAAGTCTCGCACACCATCGCCAAACTAGGCCCTTGGTCGTGCACG-AGC
65 GCGCTCGAATGTGCGAG-AGCCTCGGACACAATCGACAAACCAGGCCCGTGGTCATGCA-GAACC
* * * * * * * * *
44165821 CTCGGGCACCATCGGCAACCT-AG-GCCCTTGG-TCCTGCGAGAGCTTCGGGCACCA-CTGGC-A
128 CTCGGACACCATCGAC-ACCTGAGTG--CTCGGAT-GTGCGAGAACGTCAGACACCATC-GACAA
* * * * * * *
44165881 CCTGGGCACTCGAAT-GTGCGGGAGC
188 ACTAGGCCCTTG-GTCGTGCGAGAGA
*** *
44165906 CTCAAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCAGCACCTAG
1 CTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAAAGCCTCAGGCACCATCAGCACCTAG
* * *
44165971 GCGCTCGAATGTGCGAGAGCCTCGGACACCATCGACAAACCAGGCCCGTGGTCGTGCAGGACCCT
65 GCGCTCGAATGTGCGAGAGCCTCGGACACAATCGACAAACCAGGCCCGTGGTCATGCAGAACCCT
* * * * * *
44166036 CGGACACGATCGGCACCTGAGTGCTCGGATGTGCGGGAGCGTCGGACACCATCGACAAACTCGGC
130 CGGACACCATCGACACCTGAGTGCTCGGATGTGCGAGAACGTCAGACACCATCGACAAACTAGGC
* *
44166101 CCTTGGTCTTGCGGGAGA
195 CCTTGGTCGTGCGAGAGA
* * *
44166119 CTCGGGCACCATCGGCTACCTAGGCCCTTGGTCGTGC-AGGAGCCTCAGGCACCATCGGCACCTC
1 CTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGA-AAGCCTCAGGCACCATCAGCACCTA
* * * * * * *
44166183 GGTGCTATG-ATGTGCGAGAGCCTCGG-C-CAAT-GTCAGCATCTTAGGCCCTTGGTCATGTAGA
64 GGCGCT-CGAATGTGCGAGAGCCTCGGACACAATCGACA--AAC-CAGGCCCGTGGTCATGCAGA
* * * *
44166244 AGCCTCGAGA-ACCATCGACACCTTG-GTGCTTGGATGTGCGAGAACTTCAGACACCATCGGCAA
125 ACCCTCG-GACACCATCGACACC-TGAGTGCTCGGATGTGCGAGAACGTCAGACACCATCGACAA
* *
44166307 CCTAGGCCCTTGGTCGTGCGAGAGC
188 ACTAGGCCCTTGGTCGTGCGAGAGA
44166332 CTCGGGCACCATCGGCACCTAGG
1 CTCGGGCACCATCGGCACCTAGG
44166355 GGCTTCGATG
Statistics
Matches: 375, Mismatches: 59, Indels: 31
0.81 0.13 0.07
Matches are distributed among these distances:
210 3 0.01
211 3 0.01
212 40 0.11
213 322 0.86
214 7 0.02
ACGTcount: A:0.20, C:0.33, G:0.30, T:0.18
Consensus pattern (212 bp):
CTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAAAGCCTCAGGCACCATCAGCACCTAGG
CGCTCGAATGTGCGAGAGCCTCGGACACAATCGACAAACCAGGCCCGTGGTCATGCAGAACCCTC
GGACACCATCGACACCTGAGTGCTCGGATGTGCGAGAACGTCAGACACCATCGACAAACTAGGCC
CTTGGTCGTGCGAGAGA
Found at i:44166445 original size:43 final size:41
Alignment explanation
Indices: 44165542--44166445 Score: 268
Period size: 43 Copynumber: 21.2 Consensus size: 41
44165532 TTCCGGCCGC
* * *
44165542 ATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATAGGCAT
1 ATAGGCCCTTGGTCGTGC-GAAGCCTCGGGCACCATCGGCAA
* * ** * * * *
44165584 CTTGGTGCTAGGAT-GTACGGGAGCCTCGGACACCATCGGCAA
1 ATAGGCCCTTGG-TCGTGC-GAAGCCTCGGGCACCATCGGCAA
* * * *
44165626 CCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATAGGCAT
1 -ATAGGCCCTTGGTCGTGCGA-AGCCTCGGGCACCATCGGCAA
* * ** * * *
44165669 CTTGGTGCTAGGAT-GTACGGGAGCCTCGGGCACCATCGGCAA
1 ATAGGCCCTTGG-TCGTGC-GAAGCCTCGGGCACCATCGGCAA
* *
44165711 CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
1 -ATAGGCCCTTGGTCGTGCGA-AGCCTCGGGCACCATCGGCAA
* ** * * * ** *
44165754 CTAGGTGCTCGAAT-GTGCGGAAGTCTCGCACACCATCGCCAA
1 ATAGGCCCTTG-GTCGTGC-GAAGCCTCGGGCACCATCGGCAA
44165796 ACTAGGCCCTTGGTCGTGC-ACGAGCCTCGGGCACCATCGGCAA
1 A-TAGGCCCTTGGTCGTGCGA--AGCCTCGGGCACCATCGGCAA
* * * *
44165839 CCTAGGCCCTTGGTCCTGCGAGAGCTTCGGGCACCA-CTGGCAC
1 -ATAGGCCCTTGGTCGTGCGA-AGCCTCGGGCACCATC-GGCAA
* * * * * * ***
44165882 CTGGGCACTCGAAT-GTGCGGGAGCCTCAAACACCATCGGCAA
1 ATAGGCCCTTG-GTCGTGC-GAAGCCTCGGGCACCATCGGCAA
* * *
44165924 CCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCAGCAC
1 -ATAGGCCCTTGGTCGTGCG-AAGCCTCGGGCACCATCGGCAA
* * * * * *
44165967 CTAGGCGCTCGAAT-GTGCGAGAGCCTCGGACACCATCGACAA
1 ATAGGCCCTTG-GTCGTGCGA-AGCCTCGGGCACCATCGGCAA
* * * * * * *
44166009 ACCAGGCCCGTGGTCGTGCAGGACCCTCGGACACGATCGGCAC
1 A-TAGGCCCTTGGTCGTGC-GAAGCCTCGGGCACCATCGGCAA
* * * * * *
44166052 CTGAGTG--CTCGGAT-GTGCGGGAGCGTCGGACACCATCGACAA
1 AT-AG-GCCCTTGG-TCGTGC-GAAGCCTCGGGCACCATCGGCAA
* * * * *
44166094 ACTCGGCCCTTGGTCTTGCGGGAGACTCGGGCACCATCGGCTAC
1 A-TAGGCCCTTGGTCGTGC-GAAGCCTCGGGCACCATCGGC-AA
* * * *
44166138 CTAGGCCCTTGGTCGTGCAGGAGCCTCAGGCACCATCGGCAC
1 ATAGGCCCTTGGTCGTGC-GAAGCCTCGGGCACCATCGGCAA
* * ** * * *** * *
44166180 CTCGGTGCTATGAT-GTGCGAGAGCCTCGGCCAATGTCAGCATC
1 ATAGGCCCT-TGGTCGTGCGA-AGCCTCGGGCACCATCGGCA-A
* * * * * * *
44166223 TTAGGCCCTTGGTCATGTAGAAGCCTCGAGAACCATCGACAC
1 ATAGGCCCTTGGTCGTG-CGAAGCCTCGGGCACCATCGGCAA
* * ** * * * *
44166265 CTTGGTGCTTGGAT-GTGCGAGAACTTCAGACACCATCGGCAA
1 ATAGGCCCTTGG-TCGTGCGA-AGCCTCGGGCACCATCGGCAA
* *
44166307 CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
1 -ATAGGCCCTTGGTCGTGCGA-AGCCTCGGGCACCATCGGCAA
* ** * * * * *
44166350 CTAGGGGCTTCGAT-GTGCAGAAGGCTCAGACACAATCGGCAA
1 ATAGGCCCTT-GGTCGTGC-GAAGCCTCGGGCACCATCGGCAA
* *
44166392 ACTAAGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCGGTAGA
1 A-TAGGCCCTTGGTCGTGC-GAAGCCTCGGGCACCATCGGCA-A
44166436 ATAGGCCCTT
1 ATAGGCCCTT
44166446 CATTTTTTGA
Statistics
Matches: 626, Mismatches: 185, Indels: 101
0.69 0.20 0.11
Matches are distributed among these distances:
41 6 0.01
42 266 0.42
43 346 0.55
44 8 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (41 bp):
ATAGGCCCTTGGTCGTGCGAAGCCTCGGGCACCATCGGCAA
Found at i:44166548 original size:298 final size:288
Alignment explanation
Indices: 44165562--44166604 Score: 838
Period size: 298 Copynumber: 3.5 Consensus size: 288
44165552 GGTCGTGCGG
* * * * * * * *
44165562 GAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATGTACGGGAGCCTCG-GACACCATCGGCAA
1 GAGCCTCAGGCACCATCGGCACCTCGGTGCTCGAATGTGCGGGAGCCTCGAG-CA-CATGGGC-A
* * * * * * * * *
44165626 CCTAGGCCCTTGG-TCGTAC-GAGAGCCTCGGGCACCATAGGCATCTTGGTGCTAGGATGTACGG
63 CCTTGGCCCTTGGAT-GTGCGGA-AGCCTC-GGAACCATCGACACCTTGGTGCTTGGATGTGCGA
*
44165689 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
125 GAGCCTC-GACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
* * *
44165754 CTAGGTGCTCGAATGTGCGGAAGTCTCGCACACCATCGCCAAACTAGGCCCTTGGTCGTGCACGA
189 CTAGGTGCTCG-ATGTGCGGAAGGCTCG-ACACCATCGACAAACTAGGCCCTTGGTCGTGC-GGA
* * *
44165819 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCCTGCGA
251 GCCTCGGGCACCATCGGTAA-CTAGGCCCTT--TCTTGTGA
* * * ** * * *
44165860 GAGCTTCGGGCACCA-CTGGCACCTGGGCACTCGAATGTGCGGGAGCCTCAAACACCATCGGCAA
1 GAGCCTCAGGCACCATC-GGCACCTCGGTGCTCGAATGTGCGGGAGCCTCGAGCA-CATGGGC-A
* * * * * * *
44165924 CCTAGGCCCTTGG-TCGTGCGAAAGCCTCGGGCACCATC-AGCACCTAGGCGCTCGAATGTGCGA
63 CCTTGGCCCTTGGAT-GTGCGGAAGCCTC-GGAACCATCGA-CACCTTGGTGCTTGGATGTGCGA
* * * * *
44165987 GAGCCTCGGACACCATCGACAAACC-AGGCCCGTGGTCGTGC-AGGACCCTCGGACACGATCGGC
125 GAGCCTC-GACACCATCGGC-AACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCGGC
* * *
44166050 ACCT-GAGTGCTCGGATGTGCGGGA-GCGTCGGACACCATCGACAAACTCGGCCCTTGGTCTTGC
187 ACCTAG-GTGCTC-GATGTGCGGAAGGC-TC-GACACCATCGACAAACTAGGCCCTTGGTCGTGC
* * ** *
44166113 GGGAGACTCGGGCACCATCGGCTACCTAGGCCCTTGGTCGTGCA
248 -GGAGCCTCGGGCACCATCGG-TAACTAGGCCCTTTCTTGTG-A
* * *
44166157 GGAGCCTCAGGCACCATCGGCACCTCGGTGCTATG-ATGTGCGAGAGCCTCG-GC-CAATGTCAG
1 -GAGCCTCAGGCACCATCGGCACCTCGGTGCT-CGAATGTGCGGGAGCCTCGAGCAC-ATG--GG
* *
44166219 CATCTTAGGCCCTTGGTCATGT--AGAAGCCTCGAGAACCATCGACACCTTGGTGCTTGGATGTG
61 CACCTT-GGCCCTTGG--ATGTGCGGAAGCCTCG-GAACCATCGACACCTTGGTGCTTGGATGTG
* *
44166282 CGAGAACTTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
122 CGAGAGCCTC-GACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
* * * * *
44166347 CACCTAGGGGCTTCGATGTGCAGAAGGCTCAGACACAATCGGCAAACTAAGCCCTTGGTCGTGCG
186 CACCTAGGTGC-TCGATGTGCGGAAGGCTC-GACACCATCGACAAACTAGGCCCTTGGTCGTGCG
* * *
44166412 GAAGCCTCGGGCACCATCGGTAGAATAGGCCCTTCATTTTTTGA
249 G-AGCCTCGGGCACCATCGGTA-ACTAGGCCCTT--TCTTGTGA
* *
44166456 GAGCCTCAGGCACCATCGGCACCTTGGTGGTCGAATGTGCGGGAGCCTCGAGCAGCATGGGCACC
1 GAGCCTCAGGCACCATCGGCACCTCGGTGCTCGAATGTGCGGGAGCCTCGAGCA-CATGGGCACC
** * * * * * *
44166521 TTGGTGGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTTAGTGCTTAGATGTGCGGGA
65 TTGG-CCCTTGGATGTGCGGAAGCCTCGGA-ACCATCGAC-ACCTTGGTGCTTGGATGTGCGAGA
44166586 GCCTCGAGCACCATCGGCA
127 GCCTCGA-CACCATCGGCA
44166605 CCTTGGTGCC
Statistics
Matches: 598, Mismatches: 104, Indels: 85
0.76 0.13 0.11
Matches are distributed among these distances:
295 1 0.00
296 8 0.01
297 22 0.04
298 502 0.84
299 55 0.09
300 8 0.01
301 2 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (288 bp):
GAGCCTCAGGCACCATCGGCACCTCGGTGCTCGAATGTGCGGGAGCCTCGAGCACATGGGCACCT
TGGCCCTTGGATGTGCGGAAGCCTCGGAACCATCGACACCTTGGTGCTTGGATGTGCGAGAGCCT
CGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTG
CTCGATGTGCGGAAGGCTCGACACCATCGACAAACTAGGCCCTTGGTCGTGCGGAGCCTCGGGCA
CCATCGGTAACTAGGCCCTTTCTTGTGA
Found at i:44166579 original size:43 final size:42
Alignment explanation
Indices: 44166456--44166613 Score: 187
Period size: 43 Copynumber: 3.7 Consensus size: 42
44166446 CATTTTTTGA
* *
44166456 GAGCCTC-AGGCACCATCGGCACCTTGGTG-GTCGAATGTGCGG
1 GAGCCTCGA-GCACCATCGGCACCTTGGTGCTTAG-ATGTGCGG
* * **
44166498 GAGCCTCGAGCAGCATGGGCACCTTGGTGGCTCGGATGTGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGT-GCTTAGATGTGCGG
*
44166541 GAGCCTCG-GACACCATCGGCAACCTTAGTGCTTAGATGTGCGG
1 GAGCCTCGAG-CACCATCGGC-ACCTTGGTGCTTAGATGTGCGG
44166584 GAGCCTCGAGCACCATCGGCACCTTGGTGC
1 GAGCCTCGAGCACCATCGGCACCTTGGTGC
44166614 CTGGAATGGG
Statistics
Matches: 99, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
42 34 0.34
43 56 0.57
44 9 0.09
ACGTcount: A:0.17, C:0.29, G:0.35, T:0.19
Consensus pattern (42 bp):
GAGCCTCGAGCACCATCGGCACCTTGGTGCTTAGATGTGCGG
Found at i:44166605 original size:86 final size:85
Alignment explanation
Indices: 44166456--44166612 Score: 228
Period size: 86 Copynumber: 1.8 Consensus size: 85
44166446 CATTTTTTGA
* * * *
44166456 GAGCCTCAGGCACCATCGGCACCTTGGTGGTCGAATGTGCGGGAGCCTCGAGCAGCATGGGCACC
1 GAGCCTCAGGCACCATCGGCACCTTAGTGGTAGAATGTGCGGGAGCCTCGAGCACCATCGGCACC
44166521 TTGGTGGCTCGGATGTGCGG
66 TTGGTGGCTCGGATGTGCGG
*
44166541 GAGCCTC-GGACACCATCGGCAACCTTAGTGCTTAG-ATGTGCGGGAGCCTCGAGCACCATCGGC
1 GAGCCTCAGG-CACCATCGGC-ACCTTAGTG-GTAGAATGTGCGGGAGCCTCGAGCACCATCGGC
44166604 ACCTTGGTG
63 ACCTTGGTG
44166613 CCTGGAATGG
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
84 2 0.03
85 17 0.27
86 43 0.67
87 2 0.03
ACGTcount: A:0.17, C:0.29, G:0.35, T:0.19
Consensus pattern (85 bp):
GAGCCTCAGGCACCATCGGCACCTTAGTGGTAGAATGTGCGGGAGCCTCGAGCACCATCGGCACC
TTGGTGGCTCGGATGTGCGG
Found at i:44171836 original size:43 final size:43
Alignment explanation
Indices: 44171770--44172179 Score: 207
Period size: 43 Copynumber: 9.6 Consensus size: 43
44171760 GTGCTTGGAT
* * * *
44171770 GTGCGGGAACCTCGGGTAGCATCGACAACCTAGGGCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGGCCTTGGTC
* * * *
44171813 GTGCGAGAGCCTCGGGCACCATCGG-TACCT-GGGCACTCGAAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGGC-CTTG-GTC
* * * * ** * *
44171855 GTACGGGAGCGTCAGACACCATTAGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGGCCTTGGTC
*
44171898 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTG-CTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-GCCTTGG-TC
* *** * *
44171940 GTGCGGGAGCCTCGGACAATGTTGGCATCCTA-GGCTCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGGC-CTTGGTC
* * *
44171983 GTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGGGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGGCCTTGG-TC
* * * * * *
44172025 GTCCGGGAGGCTCGGACACCATCGGGAAACTA-AGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGGCC-TTGGTC
** * * ** * *
44172068 ACGCGGGAGCCTTGGGCACCATCGGC-ACCTCGGTACTCAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGGCCT-TGGTC
* * * * * *
44172110 GTGCAGGAGCCTCGGGCAACATCGGTAGA-ATAGGCCCTTCGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCA-ACCTAGGGCCTTGGTC
* * *
44172153 GTGTGAGAGCCTCGGGCACTATCGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
44172180 CCTTGGTGGC
Statistics
Matches: 259, Mismatches: 87, Indels: 42
0.67 0.22 0.11
Matches are distributed among these distances:
41 5 0.02
42 116 0.45
43 134 0.52
44 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.34, T:0.19
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGGCCTTGGTC
Found at i:44171916 original size:85 final size:84
Alignment explanation
Indices: 44171799--44172205 Score: 350
Period size: 85 Copynumber: 4.8 Consensus size: 84
44171789 CATCGACAAC
* * * *
44171799 CTAGGGCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTACCTGGGCACTCGAATGTACGGGAG
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGG-GCTCGGATGTACGGGAG
* *
44171864 CGTCAGACACCATTAGCAAA
65 CGTCGGACACCATTGGCAAA
* * * *
44171884 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAG
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACC-TGGGGCTCGGATGTACGGGAG
* *** **
44171949 CCTCGGACAATGTTGGCATC
65 CGTCGGACACCATTGGCAAA
* *
44171969 CTAGGCTCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGGGCTCGGATGTCCGGGAG
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCT-GGGGCTCGGATGTACGGGAG
* *
44172034 -GCTCGGACACCATCGGGAAA
65 CG-TCGGACACCATTGGCAAA
* * ** * * ** * * *
44172054 CTAAGCCTTTGGTCACGCGGGAGCCTTGGGCACCATCGGCACCTCGGTACTCAGATGTGCAGGAG
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCT-GGGGCTCGGATGTACGGGAG
* * * * *
44172119 CCTCGGGCAACATCGGTAGAA
65 CGTCGGACACCATTGGCA-AA
* * * ** *
44172140 -TAGGCCCTTCGTCGTGTGAGAGCCTCGGGCACTATCGGCACCTTGGTGGCTCAAATGTGCGGGA
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACC-TGG-GGCTCGGATGTACGGGA
44172204 GC
64 GC
44172206 CTCGAGCAGC
Statistics
Matches: 256, Mismatches: 59, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
84 1 0.00
85 234 0.91
86 21 0.08
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.19
Consensus pattern (84 bp):
CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGGCTCGGATGTACGGGAGC
GTCGGACACCATTGGCAAA
Found at i:44172045 original size:170 final size:167
Alignment explanation
Indices: 44171753--44172293 Score: 514
Period size: 170 Copynumber: 3.2 Consensus size: 167
44171743 TACCCATTGA
* * * *
44171753 CACCTTGGTGCTTGGATGTGCGGGAACCTCGGGTAGCATCGACAACCTAGGGCCTTGGTCGTGCG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCAACATCGGCAACCTA-GGCCTTGGTCGTGCG
* * **
44171818 AGAGCCTCGGGCACCATCGGTACCTGGGCACTCGAATGTACGGGA-GCGTCAGACACCATTAGCA
65 AGAGCCTCGGGCACCATCGGCACCTGGG-GCTCGAATGTACGGGAGGC-TC-GACACCATCGGCA
44171882 AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
127 AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* ** * *
44171923 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAATGTTGGCATCCTAGGCTCTTGGTCGTGCG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCAACATCGGCAACCTAGGC-CTTGGTCGTGCG
* * *
44171988 AGAGCCTCGGGCACCATCGGCACCTAGGGGCTCGGATGTCCGGGAGGCTCGGACACCATCGGGAA
65 AGAGCCTCGGGCACCATCGGCACCT-GGGGCTCGAATGTACGGGAGGCTC-GACACCATCGGCAA
* * ** *
44172053 ACTAAGCCTTTGGTCACGCGGGAGCCTTGGGCACCATCGG
128 ACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* * ** * * * * *
44172093 CACCTCGGTACTCAGATGTGCAGGAGCCTCGGGCAACATCGGTAGA-ATAGGCCCTTCGTCGTGT
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCAACATCGGCA-ACCTAGG-CCTTGGTCGTGC
* * * * *
44172157 GAGAGCCTCGGGCACTATCGGCACCTTGGTGGCTCAAATGTGCGGGAGCCTCGAGCAGCA-CGGG
64 GAGAGCCTCGGGCACCATCGGCACC-TGG-GGCTCGAATGTACGGGAGGCTCGA-CACCATC-GG
* * ** * * * * *
44172221 C-ACCTTGGTGGCTCGGACGTGCGGGAGCCTCGGACACTATCCG
125 CAAACTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
*
44172264 CAACCTTGGTGCTTGGATGTGCCGGAGCCT
1 C-ACCTTGGTGCTTGGATGTGCGGGAGCCT
44172294 TGAACACCAT
Statistics
Matches: 298, Mismatches: 62, Indels: 20
0.78 0.16 0.05
Matches are distributed among these distances:
169 3 0.01
170 217 0.73
171 55 0.18
172 23 0.08
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.20
Consensus pattern (167 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCAACATCGGCAACCTAGGCCTTGGTCGTGCGA
GAGCCTCGGGCACCATCGGCACCTGGGGCTCGAATGTACGGGAGGCTCGACACCATCGGCAAACT
AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
Found at i:44172206 original size:43 final size:43
Alignment explanation
Indices: 44172159--44172274 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
44172149 CGTCGTGTGA
*
44172159 GAGCCTCGGGCACTATCGGCACCTTGGTGGCTCAAATGTGCGG
1 GAGCCTCGGGCACTATCGGCACCTTGGTGGCTCAAACGTGCGG
* **
44172202 GAGCCTCGAGCAGC-A-CGGGCACCTTGGTGGCTCGGACGTGCGG
1 GAGCCTCGGGCA-CTATC-GGCACCTTGGTGGCTCAAACGTGCGG
* *
44172245 GAGCCTCGGACACTATCCGCAACCTTGGTG
1 GAGCCTCGGGCACTATCGGC-ACCTTGGTG
44172275 CTTGGATGTG
Statistics
Matches: 61, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
42 2 0.03
43 48 0.79
44 11 0.18
ACGTcount: A:0.16, C:0.30, G:0.35, T:0.18
Consensus pattern (43 bp):
GAGCCTCGGGCACTATCGGCACCTTGGTGGCTCAAACGTGCGG
Found at i:44172291 original size:43 final size:42
Alignment explanation
Indices: 44172194--44172328 Score: 110
Period size: 43 Copynumber: 3.1 Consensus size: 42
44172184 GGTGGCTCAA
* * * * *
44172194 ATGTGCGGGAGCCTCGAGCAGCA-CGGGCACCTTGGTGGCTCGG
1 ATGTGCCGGAGCCTCGAACACCATC-CGCACCTTGGT-GCTTGG
* * * *
44172237 ACGTGCGGGAGCCTCGGACACTATCCGCAACCTTGGTGCTTGG
1 ATGTGCCGGAGCCTCGAACACCATCCGC-ACCTTGGTGCTTGG
* ** *
44172280 ATGTGCCGGAGCCTTGAACACCATTGGCACCTCGGTGCTTGGG
1 ATGTGCCGGAGCCTCGAACACCATCCGCACCTTGGTGCTT-GG
44172323 ATGTGC
1 ATGTGC
44172329 GGGCTAAAGA
Statistics
Matches: 74, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
42 11 0.15
43 54 0.73
44 9 0.12
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.21
Consensus pattern (42 bp):
ATGTGCCGGAGCCTCGAACACCATCCGCACCTTGGTGCTTGG
Found at i:44172331 original size:86 final size:86
Alignment explanation
Indices: 44172159--44172316 Score: 192
Period size: 86 Copynumber: 1.8 Consensus size: 86
44172149 CGTCGTGTGA
* * * * *
44172159 GAGCCTCGGGCACTATCGGCACCTTGGTGGCTCAAATGTGCGGGAGCCTCGAGCAGCACGGGCAC
1 GAGCCTCGGACACTATCCGCACCTTGGTGGCTCAAATGTGCCGGAGCCTCGAACACCACGGGCAC
*
44172224 CTTGGTGGCTCGGACGTGCGG
66 CTCGGTGGCTCGGACGTGCGG
*** * **
44172245 GAGCCTCGGACACTATCCGCAACCTTGGT-GCTTGGATGTGCCGGAGCCTTGAACACCATTGGCA
1 GAGCCTCGGACACTATCCGC-ACCTTGGTGGCTCAAATGTGCCGGAGCCTCGAACACCACGGGCA
44172309 CCTCGGTG
65 CCTCGGTG
44172317 CTTGGGATGT
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
86 51 0.86
87 8 0.14
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.20
Consensus pattern (86 bp):
GAGCCTCGGACACTATCCGCACCTTGGTGGCTCAAATGTGCCGGAGCCTCGAACACCACGGGCAC
CTCGGTGGCTCGGACGTGCGG
Found at i:44179754 original size:85 final size:85
Alignment explanation
Indices: 44179641--44179936 Score: 262
Period size: 85 Copynumber: 3.5 Consensus size: 85
44179631 AGAGCCTCCA
* * *
44179641 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGGCACCTTGGTGCCTCAGATGAG
1 GCACCTTGGT-GCTCGGATGTGCTGGAGCCTCGAGCACCATCGGCACCTTGGTGCATCAGATGAG
*
44179706 GGGGAGCCTCCAGCACCATCG
65 CGGGAGCCTCCAGCACCATCG
* * * * *
44179727 GCACCTTGGTGCTCGGATGTGCTGGAGCCTCG-GCCACCAACGGTAACCTTGGTGCTTGA-ATGT
1 GCACCTTGGTGCTCGGATGTGCTGGAGCCTCGAG-CACCATCGG-CACCTTGGTGCATCAGATGA
* * * * *
44179790 GCGAGAGGCTCGAGCACAATCA
64 GCGGGAGCCTCCAGCACCATCG
* * * * * *
44179812 GTACCTTTGTACTTGTATGTG-TGAGAGCCTCGAGCACCATCGGCACCTTGGTGGATC-GAAT-A
1 GCACCTTGGTGCTCGGATGTGCTG-GAGCCTCGAGCACCATCGGCACCTTGGTGCATCAG-ATGA
**
44179874 TGCGGGAGCCT-TTGACACCATCG
64 -GCGGGAGCCTCCAG-CACCATCG
* *
44179897 GCAACCTTGGTGCTTGGATGTGCAGGAGCCTCGAGCACCA
1 GC-ACCTTGGTGCTCGGATGTGCTGGAGCCTCGAGCACCA
44179937 AAGCAAAAGT
Statistics
Matches: 165, Mismatches: 35, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
84 13 0.08
85 97 0.59
86 54 0.33
87 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (85 bp):
GCACCTTGGTGCTCGGATGTGCTGGAGCCTCGAGCACCATCGGCACCTTGGTGCATCAGATGAGC
GGGAGCCTCCAGCACCATCG
Found at i:44179776 original size:43 final size:41
Alignment explanation
Indices: 44179641--44179936 Score: 232
Period size: 43 Copynumber: 6.9 Consensus size: 41
44179631 AGAGCCTCCA
*
44179641 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCG-GCACCATCG
* * * *
44179684 GCACCTTGGTGCCTCAGATGAGGGGGAGCCTCCAGCACCATCG
1 GCACCTTGGTG-CTCGGATGTGCGGGAGCCT-CGGCACCATCG
* *
44179727 GCACCTTGGTGCTCGGATGTGCTGGAGCCTCGGCCACCAACG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGG-CACCATCG
* * * * * * *
44179769 GTAACCTTGGTGCTTGAATGTGCGAGAGGCTCGAGCACAATCA
1 G-CACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCACCATCG
* * * * * * *
44179812 GTACCTTTGTACTTGTATGTGTGAGAGCCTCGAGCACCATCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCACCATCG
* * * * *
44179854 GCACCTTGGTGGATCGAATATGCGGGAGCCTTTGACACCATCG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCC-TCGGCACCATCG
* *
44179897 GCAACCTTGGTGCTTGGATGTGCAGGAGCCTCGAGCACCA
1 GC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCACCA
44179937 AAGCAAAAGT
Statistics
Matches: 198, Mismatches: 46, Indels: 18
0.76 0.18 0.07
Matches are distributed among these distances:
41 2 0.01
42 67 0.34
43 117 0.59
44 12 0.06
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (41 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGGCACCATCG
Done.