Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 139 of 203
Found at i:44181806 original size:85 final size:85
Alignment explanation
Indices: 44181719--44182376 Score: 586
Period size: 85 Copynumber: 7.7 Consensus size: 85
44181709 CCTTGGTCGC
* * * **
44181719 GCGGGAGCCTCGGGCACCATCGACAACCTAGGCCGTTGGTCTTGCGAGAGCCTCAAGCACCATCG
1 GCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* * *
44181784 GCACCTGGGCGCTCAGATGC
66 GCACCTAGGCGCTCGGATGT
* *
44181804 GCGGGAGCTTCGGACACCATC-AGCAACCTAGGCCTTTGGTCGTGCGAGAGCCTCGGGCACCATC
1 GCGGGAGCCTCGGACACCATCGA-CAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC
*
44181868 GGCACCTAGGCGCTCGAATGT
65 GGCACCTAGGCGCTCGGATGT
* * * * * * * * * *
44181889 ACGAGAGCCTTGGACACTATC-AGCAAACTAGGCCCGTGGTCATCCGGGAGCCTCGGGCACCATT
1 GCGGGAGCCTCGGACACCATCGA-CAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC
* *
44181953 GGCACTTGGGCGCTCGGATGT
65 GGCACCTAGGCGCTCGGATGT
* * * * * * * *
44181974 GCGGGAGCGTCGAACACCATCGGCAAACTAGGCCCTTGGTCTTGTGGGAGCCTCGAGCACCATCG
1 GCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* * * *
44182039 ACACCTTGGTGCTTGGATGT
66 GCACCTAGGCGCTCGGATGT
* * * * * * * *
44182059 GCAGGAGCCTCGAACGCCATTGCCAACCTAGGCCCTTGGCCGTACGAGAGCCTCGGGTACCATCG
1 GCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* *
44182124 GCACCTAGGCGCTCAGATGC
66 GCACCTAGGCGCTCGGATGT
* * * * * * * * *
44182144 GCGGGAGCCTTGGATAGCATCGGCAAACC-AGGTCTTTGGTCATGCGGGAGCGTCGGGCACCATC
1 GCGGGAGCCTCGGACACCATCGAC-AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC
* * * * *
44182208 AGCACCTCGGTGATTGGATGT
65 GGCACCTAGGCGCTCGGATGT
* * * *
44182229 GCGGGAGCCTCGGGCACCATCGGCCAA-ATAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATC
1 GCGGGAGCCTCGGACACCATC-GACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC
* * * *
44182293 GGGACCTCGGTGCTTGGATGT
65 GGCACCTAGGCGCTCGGATGT
* * * * * * *
44182314 GCAGGAGCCTCGGACACCATAGGCAAACTAGGCCTTTGGTCGTTCGGGAGCCTCGGGCACCAT
1 GCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
44182377 TGGTAACCTA
Statistics
Matches: 458, Mismatches: 109, Indels: 12
0.79 0.19 0.02
Matches are distributed among these distances:
84 5 0.01
85 447 0.98
86 6 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (85 bp):
GCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
GCACCTAGGCGCTCGGATGT
Found at i:44181821 original size:128 final size:128
Alignment explanation
Indices: 44181591--44181878 Score: 398
Period size: 128 Copynumber: 2.3 Consensus size: 128
44181581 GCTAGGATGT
* *
44181591 GCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCAGGCACCATCG
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCAAGCACCATCG
* * * *
44181656 GCACCTAGGTGCTCAGATGTGAGGGAACCTCGAACACCATCGGCAAACTCGACCCTTGGTCGC
66 GCACCTAGGCGCTCAGATGCGAGGGAACCTCGAACACCATCAGCAAACTAGACCCTTGGTCGC
* * *
44181719 GCGGGAGCCTCGGGCACCATCGACAACCTAGGCCGTTGGTCTTGCGAGAGCCTCAAGCACCATCG
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCAAGCACCATCG
* * * * * * * * *
44181784 GCACCTGGGCGCTCAGATGCGCGGGAGCTTCGGACACCATCAGCAACCTAGGCCTTTGGTCGT
66 GCACCTAGGCGCTCAGATGCGAGGGAACCTCGAACACCATCAGCAAACTAGACCCTTGGTCGC
*
44181847 GCGAGAGCCTCGGGCACCATCGGC-ACCTAGGC
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
44181879 GCTCGAATGT
Statistics
Matches: 140, Mismatches: 20, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
127 8 0.06
128 132 0.94
ACGTcount: A:0.20, C:0.34, G:0.31, T:0.16
Consensus pattern (128 bp):
GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCAAGCACCATCG
GCACCTAGGCGCTCAGATGCGAGGGAACCTCGAACACCATCAGCAAACTAGACCCTTGGTCGC
Found at i:44181939 original size:213 final size:213
Alignment explanation
Indices: 44181564--44181951 Score: 532
Period size: 213 Copynumber: 1.8 Consensus size: 213
44181554 AGCCTCGGGT
* * * * *
44181564 ACCATTGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
1 ACCATCGGCACCTGGGCGCTAGGATGCGCGGGAGCCTCGGACACCATCAGCAACCTAGGCCCTTG
* *
44181629 GTCATGCGAGAGCCTCAGGCACCATCGGCACCTAGGTGCTCAGATGTGAGGGAACCTCGAACACC
66 GTCATGCGAGAGCCTCAGGCACCATCGGCACCTAGGCGCTCAGATGTGAGAGAACCTCGAACACC
* * *
44181694 ATCGGCAAACTCGACCCTTGGTCGCGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCGTTGGT
131 ATCAGCAAACTAGACCCGTGGTCGCGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCGTTGGT
44181759 CTTGCGAGAGCCTCAAGC
196 CTTGCGAGAGCCTCAAGC
* *
44181777 ACCATCGGCACCTGGGCGCTCA-GATGCGCGGGAGCTTCGGACACCATCAGCAACCTAGGCCTTT
1 ACCATCGGCACCTGGGCGCT-AGGATGCGCGGGAGCCTCGGACACCATCAGCAACCTAGGCCCTT
* * * * *
44181841 GGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTC-GAATGT-ACGAGAGCCTTGGAC
65 GGTCATGCGAGAGCCTCAGGCACCATCGGCACCTAGGCGCTCAG-ATGTGA-GAGAACCTCGAAC
* * *
44181904 ACTATCAGCAAACTAGGCCCGTGGTCATC-CGGGAGCCTCGGGCACCAT
128 ACCATCAGCAAACTAGACCCGTGGTC-GCGCGGGAGCCTCGGGCACCAT
44181952 TGGCACTTGG
Statistics
Matches: 151, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
212 2 0.01
213 147 0.97
214 2 0.01
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (213 bp):
ACCATCGGCACCTGGGCGCTAGGATGCGCGGGAGCCTCGGACACCATCAGCAACCTAGGCCCTTG
GTCATGCGAGAGCCTCAGGCACCATCGGCACCTAGGCGCTCAGATGTGAGAGAACCTCGAACACC
ATCAGCAAACTAGACCCGTGGTCGCGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCGTTGGT
CTTGCGAGAGCCTCAAGC
Found at i:44181965 original size:170 final size:171
Alignment explanation
Indices: 44181723--44182376 Score: 656
Period size: 170 Copynumber: 3.8 Consensus size: 171
44181713 GGTCGCGCGG
* * * * * * **
44181723 GAGCCTCGGGCACCATC-GACAACCTAGGCCGTTGGTCTTGCGAGAGCCTCAAGCACCATCGGCA
1 GAGCCTCGGACACCATCAGCCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCA
* *
44181787 CCTGGGCGCTCAGATGCGCGGGAGCTTCGGACACCATCAGCAACCTAGGCCTTTGGTCGTGCGAG
66 CCTGGGCGCTCAGATGCGCGGGAGCTTCGGACACCATCAGCAAACTAGGCCTTTGGTCGTGCGGG
* * * *
44181852 AGCCTCGGGCACCATCGGCACCTAGGCGCTCGAATGTACGA
131 AGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGA
* * * * * * *
44181893 GAGCCTTGGACACTATCAG-CAAACTAGGCCCGTGGTCATCCGGGAGCCTCGGGCACCATTGGCA
1 GAGCCTCGGACACCATCAGCCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCA
* * * * * * * * *
44181957 CTTGGGCGCTCGGATGTGCGGGAGCGTCGAACACCATCGGCAAACTAGGCCCTTGGTCTTGTGGG
66 CCTGGGCGCTCAGATGCGCGGGAGCTTCGGACACCATCAGCAAACTAGGCCTTTGGTCGTGCGGG
* * *
44182022 AGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGC-A
131 AGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGA
* * * * * *
44182062 GGAGCCTCGAACGCCAT-TGCCAACCTAGGCCCTTGGCCGTACGAGAGCCTCGGGTACCATCGGC
1 -GAGCCTCGGACACCATCAGCCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGC
* * * * * * *
44182126 ACCTAGGCGCTCAGATGCGCGGGAGCCTT-GGATAGCATCGGCAAACCAGGTCTTTGGTCATGCG
65 ACCTGGGCGCTCAGATGCGCGGGAG-CTTCGGACACCATCAGCAAACTAGGCCTTTGGTCGTGCG
* * * * *
44182190 GGAGCGTCGGGCACCATCAGCACCTCGGTGATTGGATGTGCGG
129 GGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGA
* * * * *
44182233 GAGCCTCGGGCACCATCGGCCAAA-TAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGGA
1 GAGCCTCGGACACCATCAGCCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCA
* * ** * * * *
44182297 CCTCGGTGCTTGGATGTGCAGGAGCCTCGGACACCAT-AGGCAAACTAGGCCTTTGGTCGTTCGG
66 CCTGGGCGCTCAGATGCGCGGGAGCTTCGGACACCATCA-GCAAACTAGGCCTTTGGTCGTGCGG
44182361 GAGCCTCGGGCACCAT
130 GAGCCTCGGGCACCAT
44182377 TGGTAACCTA
Statistics
Matches: 388, Mismatches: 88, Indels: 16
0.79 0.18 0.03
Matches are distributed among these distances:
169 4 0.01
170 376 0.97
171 8 0.02
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (171 bp):
GAGCCTCGGACACCATCAGCCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCA
CCTGGGCGCTCAGATGCGCGGGAGCTTCGGACACCATCAGCAAACTAGGCCTTTGGTCGTGCGGG
AGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGA
Found at i:44182088 original size:255 final size:254
Alignment explanation
Indices: 44181719--44182376 Score: 793
Period size: 255 Copynumber: 2.6 Consensus size: 254
44181709 CCTTGGTCGC
* * * *
44181719 GCGGGAGCCTCGGGCACCATCGACAACCTAGGCCGTTGGTCTTGCGAGAGCCTCAAGCACCATCG
1 GCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCTTGCGAGAGCCTCGAGCACCATCG
* * ** * * * *
44181784 GCACCTGGGCGCTCAGATGCGCGGGAGCTTCGGACACCATCAGCAACCTAGGCCTTTGGTCGTGC
66 GCACCTCGGTGCTTGGATGTGCAGGAGCCTCGGACACCAT-AGCAACCTAGGCCTTTGGTCGTAC
*
44181849 GAGAGCCTCGGGCACCATCGGCACCTAGGCGCTC-GAATGTACGAGAGCCTTGGACA-CTATCAG
130 GAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCAG-ATGCACGAGAGCCTTGGACAGC-ATCAG
* ** * * *
44181912 CAAACTAGGCCCGTGGTCATCCGGGAGCCTCGGGCACCATTGGCACTTGGGCGCTCGGATGT
193 CAAACCAGGCCCGTGGTCATCCGGGAGCCTCGGGCACCATCAGCACCTCGGCGATCGGATGT
* ** * *
44181974 GCGGGAGCGTCGAACACCATCGGCAAACTAGGCCCTTGGTCTTGTGGGAGCCTCGAGCACCATCG
1 GCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCTTGCGAGAGCCTCGAGCACCATCG
* * * * * * *
44182039 ACACCTTGGTGCTTGGATGTGCAGGAGCCTCGAACGCCATTGCCAACCTAGGCCCTTGGCCGTAC
66 GCACCTCGGTGCTTGGATGTGCAGGAGCCTCGGACACCATAG-CAACCTAGGCCTTTGGTCGTAC
* * * * *
44182104 GAGAGCCTCGGGTACCATCGGCACCTAGGCGCTCAGATGCGCGGGAGCCTTGGATAGCATCGGCA
130 GAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCAGATGCACGAGAGCCTTGGACAGCATCAGCA
* ** * * * *
44182169 AACCAGGTCTTTGGTCATGCGGGAGCGTCGGGCACCATCAGCACCTCGGTGATTGGATGT
195 AACCAGGCCCGTGGTCATCCGGGAGCCTCGGGCACCATCAGCACCTCGGCGATCGGATGT
*
44182229 GCGGGAGCCTCGGGCACCATCGGCCAAA-TAGGCCCTTGGTCGTGCGAGAGCCTCG-GCCACCAT
1 GCGGGAGCCTCGGGCACCATCGG-CAAACTAGGCCCTTGGTCTTGCGAGAGCCTCGAG-CACCAT
* *
44182292 CGGGACCTCGGTGCTTGGATGTGCAGGAGCCTCGGACACCATAGGCAAACTAGGCCTTTGGTCGT
64 CGGCACCTCGGTGCTTGGATGTGCAGGAGCCTCGGACACCATA-GCAACCTAGGCCTTTGGTCGT
* *
44182357 TCGGGAGCCTCGGGCACCAT
128 ACGAGAGCCTCGGGCACCAT
44182377 TGGTAACCTA
Statistics
Matches: 337, Mismatches: 60, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
254 2 0.01
255 328 0.97
256 7 0.02
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (254 bp):
GCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCTTGCGAGAGCCTCGAGCACCATCG
GCACCTCGGTGCTTGGATGTGCAGGAGCCTCGGACACCATAGCAACCTAGGCCTTTGGTCGTACG
AGAGCCTCGGGCACCATCGGCACCTAGGCGCTCAGATGCACGAGAGCCTTGGACAGCATCAGCAA
ACCAGGCCCGTGGTCATCCGGGAGCCTCGGGCACCATCAGCACCTCGGCGATCGGATGT
Found at i:44182448 original size:255 final size:252
Alignment explanation
Indices: 44181719--44182461 Score: 717
Period size: 255 Copynumber: 2.9 Consensus size: 252
44181709 CCTTGGTCGC
* * * *
44181719 GCGGGAGCCTCGGGCACCATCGACAACCTAGGCCGTTGGTCTTGCGAGAGCCTCAAGCACCATCG
1 GCGGGAGCCTCGGGCACCATCGGCAA-ATAGGCCCTTGGTCTTGCGAGAGCCTC-GGCACCATCG
* * ** * * * *
44181784 GCACCTGGGCGCTCAGATGCGCGGGAGCTTCGGACACCATCA-GCAACCTAGGCCTTTGGTCGTG
64 GCACCTCGGTGCTTGGATGTGCAGGAGCCTCGGACACCAT-AGGCAACCTAGGCCTTTGGTCGTA
* * * * *
44181848 CGAGAGCCTCGGGCACCATCGGCACCTAGGCGC-TCG-AATGTACGAGAGCCTTGGACACTATCA
128 CGAGAGCCTCGGGCACCATCGGCACCTAGGCCCATGGTGATGT--GAGAGCCTTGGACAGTATCG
* * * * * ** * * *
44181911 GCAAACTAGGCCCGTGGTCATCCGGGAGCCTCGGGCACCATTGGCACTTGGGCGCTCGGATGT
191 GCAACCT-GGGCCTTGGTCATGCGGGAGCGTCGGGCACCATCAGCACCTCGGCGATCGGATGT
* ** * *
44181974 GCGGGAGCGTCGAACACCATCGGCAAACTAGGCCCTTGGTCTTGTGGGAGCCTCGAGCACCATCG
1 GCGGGAGCCTCGGGCACCATCGGCAAA-TAGGCCCTTGGTCTTGCGAGAGCCTCG-GCACCATCG
* * * * * * * *
44182039 ACACCTTGGTGCTTGGATGTGCAGGAGCCTCGAACGCCATTGCCAACCTAGGCCCTTGGCCGTAC
64 GCACCTCGGTGCTTGGATGTGCAGGAGCCTCGGACACCATAGGCAACCTAGGCCTTTGGTCGTAC
* * * * * * *
44182104 GAGAGCCTCGGGTACCATCGGCACCTAGGCGCTCA-GATG-CGCGGGAGCCTTGGATAGCATCGG
129 GAGAGCCTCGGGCACCATCGGCACCTAGGC-C-CATGGTGATGTGAGAGCCTTGGACAGTATCGG
* * * * *
44182167 CAAACCAGGTCTTTGGTCATGCGGGAGCGTCGGGCACCATCAGCACCTCGGTGATTGGATGT
192 C-AACCTGGGCCTTGGTCATGCGGGAGCGTCGGGCACCATCAGCACCTCGGCGATCGGATGT
*
44182229 GCGGGAGCCTCGGGCACCATCGGCCAAATAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCG
1 GCGGGAGCCTCGGGCACCATCGG-CAAATAGGCCCTTGGTCTTGCGAGAGCCTCGG-CACCATCG
* * *
44182294 GGACCTCGGTGCTTGGATGTGCAGGAGCCTCGGACACCATAGGCAAACTAGGCCTTTGGTCGTTC
64 GCACCTCGGTGCTTGGATGTGCAGGAGCCTCGGACACCATAGGCAACCTAGGCCTTTGGTCGTAC
* * * * *
44182359 GGGAGCCTCGGGCACCATTGGTAACCTAGGCCCATGGTGATGTGAGAGCCTCGGGCAGTATCGGC
129 GAGAGCCTCGGGCACCATCGG-CACCTAGGCCCATGGTGATGTGAGAGCCTTGGACAGTATCGGC
* * *
44182424 -ACCTGGGCACTTGGATGA-GCGGGAGCGTCAGACACCAT
193 AACCTGGGC-CTTGG-TCATGCGGGAGCGTCGGGCACCAT
44182462 TGGCAAACAG
Statistics
Matches: 388, Mismatches: 85, Indels: 30
0.77 0.17 0.06
Matches are distributed among these distances:
254 9 0.02
255 342 0.88
256 35 0.09
257 2 0.01
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (252 bp):
GCGGGAGCCTCGGGCACCATCGGCAAATAGGCCCTTGGTCTTGCGAGAGCCTCGGCACCATCGGC
ACCTCGGTGCTTGGATGTGCAGGAGCCTCGGACACCATAGGCAACCTAGGCCTTTGGTCGTACGA
GAGCCTCGGGCACCATCGGCACCTAGGCCCATGGTGATGTGAGAGCCTTGGACAGTATCGGCAAC
CTGGGCCTTGGTCATGCGGGAGCGTCGGGCACCATCAGCACCTCGGCGATCGGATGT
Found at i:44182673 original size:85 final size:85
Alignment explanation
Indices: 44181534--44182785 Score: 346
Period size: 85 Copynumber: 14.7 Consensus size: 85
44181524 TCCGCCAGCA
* * * * *
44181534 TAGGCCCTTGGTCGTGCTGGAGCCTCGGGTACCATTGGCACCTTGGTGCTAGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
*
44181599 CTCGGACACCATCGGCAACC
66 CTCAGACACCATCGGCAACC
* * ** * ** * *
44181619 TAGGCCCTTGGTCATGCGAGAGCCTCAGGCACCATCGGCACCTAGGTGCTCAGATGTGAGGGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
*
44181684 CTC-GAACACCATCGGCAAAC
66 CTCAG-ACACCATCGGCAACC
* * * * * * * * *
44181704 TCGACCCTTGGTCGCGCGGGAGCCTCGGGCACCATCGACAACCTAGG-CCGTTGG-TCTTGCGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGC-TTGGAT-GTGCGGG
44181767 AGCCTCA-AGCACCATCGGC-ACC
63 AGCCTCAGA-CACCATCGGCAACC
* * * * * * * * *
44181789 TGGGCGCTCAGAT-GCGCGGGAG-CTTCGGACACCATCAGCAACCTAGG-CCTTTGG-TCGTGCG
1 TAGGCCCT-TGGTCGTGCGGGAGCCTT-GGGCACCATCGGC-ACCTTGGTGC-TTGGAT-GTGCG
* * *
44181850 AGAGCCTCGGGCACCATCGGC-ACC
61 GGAGCCTCAGACACCATCGGCAACC
* * * * * * * * * * ** * * *
44181874 TAGGCGCTCGAAT-GTACGAGAGCCTTGGACACTATCAGCAAACTAGGCCCGTGG-TCATCCGGG
1 TAGGCCCTTG-GTCGTGCGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGG
* * * *
44181937 AGCCTCGGGCACCATTGGC-ACT
63 AGCCTCAGACACCATCGGCAACC
* * * * * ** * * ** * *
44181959 TGGGCGCTCGGAT-GTGCGGGAGCGTCGAACACCATCGGCAAACTAGGCCCTTGG-TCTTGTGGG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGG
*
44182022 AGCCTC-GAGCACCATCGAC-ACC
63 AGCCTCAGA-CACCATCGGCAACC
* ** * * ** * * * * ** ** * *
44182044 TTGGTGCTTGGAT-GTGCAGGAGCCTCGAACGCCATTGCCAACCTAGGCCCTTGGCCGTACGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCTTGGATGTGCGGGA
* **
44182108 GCCTCGGGTACCATCGGC-ACC
64 GCCTCAGACACCATCGGCAACC
* * * * ** * * *
44182129 TAGGCGCTCAGAT-GCGCGGGAGCCTTGGATAGCATCGGCAAACC-AGGT-CTTTGG-TCATGCG
1 TAGGCCCT-TGGTCGTGCGGGAGCCTTGGGCACCATCGGC--ACCTTGGTGC-TTGGAT-GTGCG
* * * *
44182190 GGAGCGTCGGGCACCATCAGC-ACC
61 GGAGCCTCAGACACCATCGGCAACC
* *** * ** * ** *
44182214 TCGGTGATTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCCAAATAGGCCCTTGG-TCGTGCGAG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTTGGGCACCATCGG-CACCTTGGTGCTTGGAT-GTGCGGG
* * *
44182277 AGCCTCGGCCACCATCGG-GACC
63 AGCCTCAGACACCATCGGCAACC
* ** * * * * * * * *
44182299 TCGGTGCTTGGAT-GTGCAGGAGCCTCGGACACCATAGGCAAACTAGG-CCTTTGG-TCGTTCGG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGC-TTGGAT-GTGCGG
* * * *
44182361 GAGCCTCGGGCACCATTGGTAACC
62 GAGCCTCAGACACCATCGGCAACC
* * * * ** * ** *
44182385 TAGGCCCATGGT-GATGTGAGAGCCTCGGGCAGTATCGGCACCTGGGCACTTGGATGAGCGGGAG
1 TAGGCCCTTGGTCG-TGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAG
* * *
44182449 CGTCAGACACCATTGGCAAAC
65 CCTCAGACACCATCGGCAACC
* * * *
44182470 -AGGGCCCTTGGTCGTGCGGGAGCC-TAGGCAACAACGGAACCTTGGTGCTAT-GATGTGCGGGA
1 TA-GGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCT-TGGATGTGCGGGA
* *** * *
44182532 GCCTCGGACAATGTCAGCATCC
64 GCCTCAGACACCATCGGCAACC
* *** * * * *
44182554 TAGGCCTTTGGTCGTGCGGGAGCCTCAAGTACCATCGACACCTTGGTGCTTGGATGTGCGGTAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
*
44182619 CTCAGACACCGTCGGCAACC
66 CTCAGACACCATCGGCAACC
* * * *
44182639 TAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCGGCACCTAGG-GCCTCGGATGTGCGAGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTG-CTTGGATGTGCGGGAG
* * *
44182703 GCTTAGACACCATCGGCAAAC
65 CCTCAGACACCATCGGCAACC
* * *
44182724 TAAGCCCTTGGTC-TCGCGGGAGCCTTGGGCACCATCGGTACCTCGGTGCTCT-GATGTGCGGG
1 TAGGCCCTTGGTCGT-GCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCT-TGGATGTGCGGG
44182786 TGTAACACCC
Statistics
Matches: 910, Mismatches: 216, Indels: 82
0.75 0.18 0.07
Matches are distributed among these distances:
84 75 0.08
85 760 0.84
86 75 0.08
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
CTCAGACACCATCGGCAACC
Found at i:44184254 original size:40 final size:39
Alignment explanation
Indices: 44184116--44184294 Score: 157
Period size: 40 Copynumber: 4.5 Consensus size: 39
44184106 AAATCACGTA
* **
44184116 CCTTCGGAATTTAA-CCGGATATAGCT-ACTCGTTCAAATG
1 CCTTCGG-ACTTAACCCGGATATAG-TAACTCGCACAAATG
* * *
44184155 CCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTC-GGACTTAACCCGGATATAGTAACTCGCACAAATG
*
44184195 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTC-GGACTTAACCCGGATATAGTAACTCGCACAAATG
* * * * *
44184235 CCTTCGGATCTTTATCCGGATATATTCACTTAGCACAAA-G
1 CCTTCGGA-CTTAACCCGGATATAGTAAC-TCGCACAAATG
*
44184275 CCTTCGGGACTTAGCCCGGA
1 CCTTC-GGACTTAACCCGGA
44184295 CATCATTCAA
Statistics
Matches: 115, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
39 12 0.10
40 92 0.80
41 11 0.10
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (39 bp):
CCTTCGGACTTAACCCGGATATAGTAACTCGCACAAATG
Found at i:44184596 original size:64 final size:64
Alignment explanation
Indices: 44184495--44184621 Score: 245
Period size: 64 Copynumber: 2.0 Consensus size: 64
44184485 GAACTTACCT
44184495 CGGGTGTTGTCGAACGATTCCGATAGCTATTCGACCACTTTTTCATTCCCTTTATCGGATTTAG
1 CGGGTGTTGTCGAACGATTCCGATAGCTATTCGACCACTTTTTCATTCCCTTTATCGGATTTAG
*
44184559 CGGGTGTTGTCGAACGATTCCGATAGCTATTCGACCACTTTTTCCTTCCCTTTATCGGATTTA
1 CGGGTGTTGTCGAACGATTCCGATAGCTATTCGACCACTTTTTCATTCCCTTTATCGGATTTA
44184622 TTTCCCCTTT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (64 bp):
CGGGTGTTGTCGAACGATTCCGATAGCTATTCGACCACTTTTTCATTCCCTTTATCGGATTTAG
Found at i:44186104 original size:85 final size:86
Alignment explanation
Indices: 44185961--44186144 Score: 235
Period size: 85 Copynumber: 2.2 Consensus size: 86
44185951 TGTCACAGCG
* * * * * *
44185961 GGAGCCTCGGGCACCATCGACAGAATAGTCCCTTCGTCGTCCGAGAGCCTCAGGCACCATCGGCA
1 GGAGCCTCGAGCACCATAGACAAAATAGGCCCTTCATCGTCCGAGAGCATCAGGCACCATCGGCA
44186026 CCTCAGT-GCTCGGATGTGCA
66 CCTCAGTGGCTCGGATGTGCA
* * * * *
44186046 GGAGCCTCGAGCACCGTAGGCAAAATAGGCCCTTCATCGTGCGAGAGCATCGGGCACCATCGGTA
1 GGAGCCTCGAGCACCATAGACAAAATAGGCCCTTCATCGTCCGAGAGCATCAGGCACCATCGGCA
** *
44186111 CCTTGGTGGCTCGGATGTGCG
66 CCTCAGTGGCTCGGATGTGCA
44186132 GGAGCCTCGAGCA
1 GGAGCCTCGAGCA
44186145 GCATGGGCAC
Statistics
Matches: 84, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
85 59 0.70
86 25 0.30
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (86 bp):
GGAGCCTCGAGCACCATAGACAAAATAGGCCCTTCATCGTCCGAGAGCATCAGGCACCATCGGCA
CCTCAGTGGCTCGGATGTGCA
Found at i:44186158 original size:43 final size:42
Alignment explanation
Indices: 44186099--44186260 Score: 173
Period size: 43 Copynumber: 3.8 Consensus size: 42
44186089 AGAGCATCGG
* *
44186099 GCACCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCACCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTC-A
* * * *
44186142 GCAGCATGGGCACCTTGGTGGCTTGAATGTGCGAGAGCCTCA
1 GCACCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCA
* *
44186184 GACACCATCGACAACCTTGGT-GCTTGGATGTACGGGAGCCTCAA
1 G-CACCATCGGC-ACCTTGGTGGCTTGGATGTGCGGGAGCCTC-A
* ** *
44186228 GCACCACCGGCACCTTGGTACCTGGGATGTGCG
1 GCACCATCGGCACCTTGGTGGCTTGGATGTGCG
44186261 AGCTAAAGAA
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
42 10 0.10
43 78 0.80
44 10 0.10
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.20
Consensus pattern (42 bp):
GCACCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCA
Found at i:44186174 original size:86 final size:86
Alignment explanation
Indices: 44186084--44186246 Score: 211
Period size: 86 Copynumber: 1.9 Consensus size: 86
44186074 GCCCTTCATC
* * ** * * *
44186084 GTGCGAGAGCATCGGGCACCATCG-GTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
1 GTGCGAGAGCATCAGACACCATCGACAACCTTGGT-GCTCGGATGTACGGGAGCCTCAAGCACCA
**
44186148 TGGGCACCTTGGTGGCTTGAAT
65 CCGGCACCTTGGTGGCTTGAAT
* *
44186170 GTGCGAGAGCCTCAGACACCATCGACAACCTTGGTGCTTGGATGTACGGGAGCCTCAAGCACCAC
1 GTGCGAGAGCATCAGACACCATCGACAACCTTGGTGCTCGGATGTACGGGAGCCTCAAGCACCAC
44186235 CGGCACCTTGGT
66 CGGCACCTTGGT
44186247 ACCTGGGATG
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
86 57 0.88
87 8 0.12
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.20
Consensus pattern (86 bp):
GTGCGAGAGCATCAGACACCATCGACAACCTTGGTGCTCGGATGTACGGGAGCCTCAAGCACCAC
CGGCACCTTGGTGGCTTGAAT
Found at i:44187883 original size:249 final size:249
Alignment explanation
Indices: 44187445--44187943 Score: 998
Period size: 249 Copynumber: 2.0 Consensus size: 249
44187435 CACATCGAAG
44187445 GAAGGCAACAGGCGCACAAAATTACCCAGTCCTGACACGGGGAGGGAGTGACAATAAATAACAAC
1 GAAGGCAACAGGCGCACAAAATTACCCAGTCCTGACACGGGGAGGGAGTGACAATAAATAACAAC
44187510 ACCGGGCTCTATGAGTCTGGTAATTGGAATGAGTACAATCTAAATGCCTTAACAAGGATCCATTG
66 ACCGGGCTCTATGAGTCTGGTAATTGGAATGAGTACAATCTAAATGCCTTAACAAGGATCCATTG
44187575 GAGGGCAAGTCTGGTGCAAGCAGCCACGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTG
131 GAGGGCAAGTCTGGTGCAAGCAGCCACGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTG
44187640 CAGTTAAAAAGCTCACAGTTGGACTTAGGGGTGGGTATACCGGTCCGCCTCACA
196 CAGTTAAAAAGCTCACAGTTGGACTTAGGGGTGGGTATACCGGTCCGCCTCACA
44187694 GAAGGCAACAGGCGCACAAAATTACCCAGTCCTGACACGGGGAGGGAGTGACAATAAATAACAAC
1 GAAGGCAACAGGCGCACAAAATTACCCAGTCCTGACACGGGGAGGGAGTGACAATAAATAACAAC
44187759 ACCGGGCTCTATGAGTCTGGTAATTGGAATGAGTACAATCTAAATGCCTTAACAAGGATCCATTG
66 ACCGGGCTCTATGAGTCTGGTAATTGGAATGAGTACAATCTAAATGCCTTAACAAGGATCCATTG
44187824 GAGGGCAAGTCTGGTGCAAGCAGCCACGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTG
131 GAGGGCAAGTCTGGTGCAAGCAGCCACGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTG
44187889 CAGTTAAAAAGCTCACAGTTGGACTTAGGGGTGGGTATACCGGTCCGCCTCACA
196 CAGTTAAAAAGCTCACAGTTGGACTTAGGGGTGGGTATACCGGTCCGCCTCACA
44187943 G
1 G
44187944 TTAGCACCGG
Statistics
Matches: 250, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
249 250 1.00
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (249 bp):
GAAGGCAACAGGCGCACAAAATTACCCAGTCCTGACACGGGGAGGGAGTGACAATAAATAACAAC
ACCGGGCTCTATGAGTCTGGTAATTGGAATGAGTACAATCTAAATGCCTTAACAAGGATCCATTG
GAGGGCAAGTCTGGTGCAAGCAGCCACGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTG
CAGTTAAAAAGCTCACAGTTGGACTTAGGGGTGGGTATACCGGTCCGCCTCACA
Found at i:44201087 original size:54 final size:54
Alignment explanation
Indices: 44201005--44201113 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
44200995 GCGGCGGTCG
44201005 ACTCCGATTGACTCAAGAAAAATAAATCAGCCTTGAAGAGTTCAATTAAAGTAA
1 ACTCCGATTGACTCAAGAAAAATAAATCAGCCTTGAAGAGTTCAATTAAAGTAA
*
44201059 ACTCCGATTGACTCAAGAAAATTAAATCAGCCTTGAAGAGTTCAATTAAAGTAA
1 ACTCCGATTGACTCAAGAAAAATAAATCAGCCTTGAAGAGTTCAATTAAAGTAA
44201113 A
1 A
44201114 ACTCTAGTAG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.25
Consensus pattern (54 bp):
ACTCCGATTGACTCAAGAAAAATAAATCAGCCTTGAAGAGTTCAATTAAAGTAA
Found at i:44201113 original size:29 final size:29
Alignment explanation
Indices: 44201027--44201113 Score: 76
Period size: 29 Copynumber: 3.1 Consensus size: 29
44201017 TCAAGAAAAA
44201027 TAAATCAGCCTTGAAGAGTTCAATTAAAG
1 TAAATCAGCCTTGAAGAGTTCAATTAAAG
* * * ** *
44201056 TAAA-C-TCC--GATTGA-CTCAAGAAAAT
1 TAAATCAGCCTTGA-AGAGTTCAATTAAAG
44201081 TAAATCAGCCTTGAAGAGTTCAATTAAAG
1 TAAATCAGCCTTGAAGAGTTCAATTAAAG
44201110 TAAA
1 TAAA
44201114 ACTCTAGTAG
Statistics
Matches: 40, Mismatches: 12, Indels: 12
0.62 0.19 0.19
Matches are distributed among these distances:
25 13 0.32
26 3 0.08
27 4 0.10
28 3 0.08
29 17 0.43
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (29 bp):
TAAATCAGCCTTGAAGAGTTCAATTAAAG
Found at i:44214301 original size:40 final size:41
Alignment explanation
Indices: 44214218--44214363 Score: 176
Period size: 40 Copynumber: 3.6 Consensus size: 41
44214208 TTGAATGATG
* * * *
44214218 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
44214258 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
44214298 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
44214339 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
44214364 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
39 1 0.01
40 82 0.89
41 9 0.10
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:44214377 original size:40 final size:40
Alignment explanation
Indices: 44214219--44214382 Score: 120
Period size: 40 Copynumber: 4.1 Consensus size: 40
44214209 TGAATGATGT
* ** * * *
44214219 CCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTATAA
* ** *
44214259 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGTGACTATAA
* ** *
44214298 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
* *
44214339 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTATAA
44214379 CCGG
1 CCGG
44214383 TTAAATTCCG
Statistics
Matches: 104, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
39 3 0.03
40 92 0.88
41 9 0.09
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:44214381 original size:80 final size:80
Alignment explanation
Indices: 44214218--44214396 Score: 177
Period size: 80 Copynumber: 2.2 Consensus size: 80
44214208 TTGAATGATG
* *
44214218 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
** *
44214283 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* * * * * *
44214298 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
44214361 TTGAACGAG-GAGCTATA
64 TTGAACGAGTGA-CTAAA
* *
44214378 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
44214397 TACGTGATTT
Statistics
Matches: 82, Mismatches: 14, Indels: 7
0.80 0.14 0.07
Matches are distributed among these distances:
79 16 0.20
80 60 0.73
81 6 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:44218832 original size:43 final size:43
Alignment explanation
Indices: 44218785--44218917 Score: 187
Period size: 43 Copynumber: 3.1 Consensus size: 43
44218775 CCGCACTGTC
* * *
44218785 GGCACCTTGGTGGCTCAGATGTGTGGGAGCCTCGAGCAGTATT
1 GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATT
*
44218828 GGCACCTTGGTGGCTCGGATGTGCGGAAGCCTCGAGC-GCCATT
1 GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAG-CATT
* * *
44218871 GGCACCTTGGTGCCTCGGATGTGCGGGAGCCCCGAGCACCATT
1 GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATT
44218914 GGCA
1 GGCA
44218918 ACTTTGGCCC
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
42 1 0.01
43 79 0.99
ACGTcount: A:0.15, C:0.27, G:0.37, T:0.21
Consensus pattern (43 bp):
GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATT
Found at i:44219478 original size:43 final size:43
Alignment explanation
Indices: 44219384--44219488 Score: 122
Period size: 43 Copynumber: 2.5 Consensus size: 43
44219374 AGAGCCTCCA
* *
44219384 GCACCTTGGTGGCTCAGATGTGCGGGAGCCTTAAACACCATCG
1 GCACCTTGGTGGCTCAGATGAGCGGGAGCCTCAAACACCATCG
** * * * **
44219427 AAAACTTGGTGGCTCAGATGAGGGGGAGCCTCGAGTACCATCG
1 GCACCTTGGTGGCTCAGATGAGCGGGAGCCTCAAACACCATCG
44219470 GCACCTTGGT-GCTCAGATG
1 GCACCTTGGTGGCTCAGATG
44219489 TACTAGAACC
Statistics
Matches: 50, Mismatches: 12, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
42 9 0.18
43 41 0.82
ACGTcount: A:0.22, C:0.25, G:0.32, T:0.21
Consensus pattern (43 bp):
GCACCTTGGTGGCTCAGATGAGCGGGAGCCTCAAACACCATCG
Found at i:44220463 original size:85 final size:85
Alignment explanation
Indices: 44220331--44223463 Score: 2125
Period size: 85 Copynumber: 36.8 Consensus size: 85
44220321 GGTCGTGCAA
* * * *
44220331 GAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATTGACAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * *
44220396 CTAAGTGCTTGGATGTGTGG
66 CTAGGCGCTTGGATGTGCGG
* *
44220416 GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
* *
44220481 CCTAGGCCCTTGG-TCGTGCGA
65 CCTAGGCGCTTGGAT-GTGCGG
* * * * * *
44220502 GAGCCTCGGACACCTTCGGCAAACGAGGTCCTTGGTCGTGCAGGAGCCTCAGGCACCATCGGCAA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
* *
44220567 CCTAGGCCCTTGG-TCGTGCGA
65 CCTAGGCGCTTGGAT-GTGCGG
* * * * *
44220588 GAGCCTCGGGCACCATCGGC-ACCT-GGACGCTCGGAT-GTGCGGGAGCCTCGGACACCATCAGC
1 GAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
* *
44220650 AACCTAGGC-CTTTGGTTGTGCGA
64 -ACCTAGGCGC-TTGGATGTGCGG
* * * * * * *
44220673 GAGCCTCGGGCACCATCGGC-ACCTAAGCGCTCAGAT-GTGCGGGAGCCTCGGACACCATCGACA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
* * * *
44220736 AACTAGGCTCGTGG-TCGTGTGG
64 ACCTAGGCGCTTGGAT-GTGCGG
** * * * * *** * * *
44220758 GAGCCTCGGGTACCATCAGC-ACTTGGGCGCTCAAAT-GTGTGGGAGCGTCGGACACCATCGGAA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGG--
* * * *
44220821 AACC-GGGCCCTTGG-TCTTGCGG
63 CACCTAGGCGCTTGGAT-GTGCGG
* * * *
44220843 GAGCCTCGGGCACCATCGGCTAA-CTAGCCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACA
1 GAGCCTCGGACACCATCGGC-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
44220907 CCTTGGTGCTTGGATGTGCGG
65 CCTAGGCGCTTGGATGTGCGG
* * * * * ** * *
44220928 GAACGC-CGAACACCATTGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTTAGGCACCACCGGTA
1 GAGC-CTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * *
44220992 CCTAGGGGCTCGGATGTACGG
65 CCTAGGCGCTTGGATGTGCGG
* * * *
44221013 GACCCTCGGACACCATCGGTTAA-GTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCT
1 GAGCCTCGGACACCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* ** **
44221077 CCTCGGTACTTGGATGTGAAG
65 CCTAGGCGCTTGGATGTGCGG
* * * * * * *
44221098 GAGCCTCGGGCACCATCGGTAGA-ATAGGCCCTTCGTCATGCGAGAGCCTCGGCCACCATCAGG-
1 GAGCCTCGGACACCATCGGCA-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGC
* *
44221161 ACCTAGGTGCTTGGATGTACGG
64 ACCTAGGCGCTTGGATGTGCGG
* * * * * *
44221183 GACCCTCGGACACCATCGACAA-ATATGGCCCTTGGTCGAGCGGGAGCCTCGGTCACCATCGGTA
1 GAGCCTCGGACACCATCGGCAACCTA-GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-C
* *
44221247 ACCTAGGCGTTTGG-TCGTGCGA
64 ACCTAGGCGCTTGGAT-GTGCGG
* * ** * * * *
44221269 GAGCCTC-GAGCACCATTGGC-ACCTGGGCGGTCAGAT-GTGCGGGAGCCTCAGACACCATCGGC
1 GAGCCTCGGA-CACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* * *
44221331 ATCCTAGGCCCTTGG-TCATGAGG
64 A-CCTAGGCGCTTGGAT-GTGCGG
* * * * ** * * * * *
44221354 GAGTCTCGGGCACGATCAGC-ACCTAGGTGCTCGGAT-TTACGGGAGCCTTGGACACCATCGGCA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-
* * * ** *
44221417 AACTAGGCCCGTGGCCGTACGG
64 ACCTAGGCGCTTGGATGTGCGG
* * * * * * * * * * *
44221439 GAGCCTCGGGCACCATCAGC-ACTTGGGCGCTCGGAT-GTGCGAGAGCGTCAGACACGATCGGTA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG--
* * *
44221502 AACC-AGGCCCTTGG-TTTGGCGG
63 CACCTAGGCGCTTGGATGT-GCGG
* * * * * *
44221524 GAGCCTCGGGCACCATCGACTACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGACAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* *
44221589 CTTGGTGCTTGGATGTGCGG
66 CTAGGCGCTTGGATGTGCGG
* * * * *** *
44221609 GAACCGCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTTAAGCACCATTGGCAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* ** *
44221674 CTAGGGGCTCAGATGTGTGG
66 CTAGGCGCTTGGATGTGCGG
* * * * *
44221694 GAGCATCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCTTCGGCAA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
* * *
44221759 ACGAGGTC-CTTGG-TCGTGCAG
65 CCTAGG-CGCTTGGAT-GTGCGG
* *
44221780 GAGCCTCAGG-CACCATCGCCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
1 GAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
*
44221844 CCTAGGCGCTCGGATGTGCGG
65 CCTAGGCGCTTGGATGTGCGG
* * * *
44221865 GAGCCTCGGACACCATCAGCAACCTAGGCCATTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* *
44221930 CTAGGCGCTCGGATGTACGG
66 CTAGGCGCTTGGATGTGCGG
* * * *
44221950 GAGCCTCGAACACCATCGGCAAACTAGGCCCGTGGTCGTGCGGGAGCCTCGGGTACCATCGGCAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * * * * *
44222015 TTGGGTGCTTGGATATACAG
66 CTAGGCGCTTGGATGTGCGG
* * * *
44222035 GAGCCTCGGACACCATCGGCAAACC-AGGCCCTTGGTCTTACGGAAGCCTCAGGCACCATCGGCT
1 GAGCCTCGGACACCATCGGC-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
* *
44222099 ACCTAGCCCCTTGG-TCGTGCGG
64 ACCTAGGCGCTTGGAT-GTGCGG
* * * * ** * * * *
44222121 TAGCCTC-GAGCACCACCGAC-ACCTTGGTGCTTGGAT-GTGCGGGAACGTTGGACACCATCGGC
1 GAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
* *
44222183 AACCTAGGCCCTTGG-TCGTGCGA
64 -ACCTAGGCGCTTGGAT-GTGCGG
** * * * *
44222206 GAGCCTCAGG-CACCATCGGC-ACCTAGGGGCTCGGAT-GTACGAGAGCCTCGGAG-ACCATCAG
1 GAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-GCACCATCGG
* *
44222267 CTAACTAGGCCCTTGG-TCGTGCGG
63 C-ACCTAGGCGCTTGGAT-GTGCGG
* ** * * *
44222291 GAGCCTC-GAGCACCATCGGC-ACCTCGGTGCTAGGAT-GTGAGGGAGCCTCGGGCACCATCGGT
1 GAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
** * * *
44222353 AGAATAGGCCCTTCG-TCGTGCGA
64 A-CCTAGGCGCTTGGAT-GTGCGG
* ** * * *
44222376 GAGCCTCGGCCACCATCAGG--ACCTAGGTGCTTGGAT-GTGTGGGAGCCTCAGACACCATCGGC
1 GAGCCTCGGACACCATC-GGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
* *
44222438 AAACTAGGCCCTTGG-TCGTGCGG
64 -ACCTAGGCGCTTGGAT-GTGCGG
* * *
44222461 GAGCCTCAGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATTGGCA
1 GAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * *
44222525 CCTAGGCGGTCGGATGTACGAG
65 CCTAGGCGCTTGGATGTGCG-G
* * * * * * *
44222547 G-GCCTTGGACACCATCGACATCCTAGGCCATTGGTCATGCGGGAGTCTCGAGCACCA-CGGGCA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGCA
44222610 CCTAGGCG-TTCGGATGTGCGG
65 CCTAGGCGCTT-GGATGTGCGG
* * * *
44222631 GAGCCTTGGACACCATCGGCAAACTA-GACCTGTGGTCGTG-GGGAAGCCTCAGGCACCATCGGC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGG-AGCCTCGGGCACCATCGGC
* *
44222694 ACTTCA-GCGCTCGGATGTGCGG
64 ACCT-AGGCGCTTGGATGTGCGG
* * * * * * *** *
44222716 GAGCGTCAGACACCATCAGCTACGTAGGCCCTTGGTCGCGCGGGAGCCTTTAGCACCATCGACAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* *
44222781 CTTGGTGCTTGGATGTGCGG
66 CTAGGCGCTTGGATGTGCGG
* * * * * * ** * **
44222801 GAACCACGGACACCATCGGCAACCTAGACCCTTGGTCATGAGAGAGCCTTAGGCATCATCGGTGC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * *
44222866 CTAGGGGCTCGGATGTGCGA
66 CTAGGCGCTTGGATGTGCGG
* ** *
44222886 GAGCATCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGAACCATCGGCAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* *
44222951 CT-GGACACTCGGATGTGCGG
66 CTAGG-CGCTTGGATGTGCGG
** * * * *
44222971 GAGATTTGGACACCATTC-GCAAGCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAACATCGGCC
1 GAGCCTCGGACACCA-TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * *
44223035 CCTCGGTGCTAT-GATGTGCAG
65 CCTAGGCGCT-TGGATGTGCGG
** *** * * * *
44223056 GAGCCTCAAACAATGTCGGCATCCTAGGCCCTTGGTCGTGCGGGAGTCTCGAGCACCATCGACAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* *
44223121 CTTGGTGCTTGGATGTGCGG
66 CTAGGCGCTTGGATGTGCGG
* * * * *
44223141 GAACCTCAGACACCATTGGCAACCTAGGCCCTTGGTCATGTGGGAGCCTCGGGCACCATCGGCAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* *
44223206 CTAGGGGCTCGGATGTGCGG
66 CTAGGCGCTTGGATGTGCGG
* * * * * * * * *
44223226 GAGGCTCGGACACCATTGGCAAACTAAGCCCTTGGTCGCGTGAGAGCCTCGGGCACCATTGGTAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * * *
44223291 CTCGGTGCTCGGATGTGCGA
66 CTAGGCGCTTGGATGTGCGG
* * * * * * *
44223311 GAGCCTCAGG-CACCATTGGTAGA-ATAGGCCCTTCGTTGTGCGAGAGCCTCGGGCACCATCAGC
1 GAGCCTC-GGACACCATCGGCA-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* * * *
44223374 ACCTTGGTGGCTCGGATGTACGG
64 ACCTAGG-CGCTTGGATGTGCGG
* *
44223397 GAGCCTCGGACACCATCGGCAACCTTAGTG--CTTGGAT-GTGCGGGGGCCTCGAGCACCATCGG
1 GAGCCTCGGACACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
44223459 CACCT
63 CACCT
44223464 TGGGGATGTG
Statistics
Matches: 2445, Mismatches: 506, Indels: 193
0.78 0.16 0.06
Matches are distributed among these distances:
83 1 0.00
84 50 0.02
85 1950 0.80
86 435 0.18
87 8 0.00
88 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.18
Consensus pattern (85 bp):
GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
CTAGGCGCTTGGATGTGCGG
Found at i:44220760 original size:128 final size:128
Alignment explanation
Indices: 44220312--44223421 Score: 1111
Period size: 128 Copynumber: 24.3 Consensus size: 128
44220302 TCCGGTAGCA
** *
44220312 TAGGCCCTTGGTCGTGCAAGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCGTGGTCGTGCGAGAG
* * * * * * *
44220377 CCTCGGGCACCAT-TG-ACACCTAAGTG-CTTGGATGTGTGGGAGCCTCGGACACCATCGGCAAA
66 CCTCGGACACCATCAGCA-ACCT-AG-GCCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAAC
44220439 C
128 C
* *
44220440 TAGGCCCTTGGTCGTGCGGGAGCCTCAGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGACAACCTAGGCCCGTGGTCGTGCGAGA
* * * * * *
44220504 GCCTCGGACACCTTCGGCAAACGAGGTCCTTGGTCGTGC-AGGAGCCTCAGGCACCATCGGCAAC
65 GCCTCGGACACCATCAGCAACCTAGG-CCTTGGTTGTGCGA-GAGCCTCGGGCACCATCGGCAAC
44220568 C
128 C
* * * * *
44220569 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCT-GGACGCTCG-GAT-GTGCGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGACAACCTAGG-C-C-CGTGGTCGTGCGA
44220630 GAGCCTCGGACACCATCAGCAACCTAGGCCTTTGGTTGTGCGAGAGCCTCGGGCACCATCGGC-A
63 GAGCCTCGGACACCATCAGCAACCTAGGCC-TTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAA
44220694 CC
127 CC
* * * * * * * *
44220696 TAAGCGCTCAGAT-GTGCGGGAGCCTCGGACACCATCGACAAACTAGGCTCGTGGTCGTGTGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCGTGGTCGTGCGAGA
** * * **** * * * * *
44220760 GCCTCGGGTACCATCAGC-ACTTGGGCGCTCAAATGTGTGGGAGCGTCGGACACCATCGGAAAAC
65 GCCTCGGACACCATCAGCAACCTAGGC-CTTGGTTGTGCGAGAGCCTCGGGCACCATCGG-CAAC
44220824 C
128 C
* * * * * * *
44220825 -GGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCGGCTAA-CTAGCCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGAC-AACCTAGGCCCGTGGTCGTGCGAGA
* * * * * ** *
44220888 GCCTC-GAGCACCATC-G-ACACCTTGGTGCTTGGATGTGCGGGAACGC-CGAACACCATTGGCA
65 GCCTCGGA-CACCATCAGCA-ACCTAGG-CCTTGGTTGTGCGAGAGC-CTCGGGCACCATCGGCA
44220949 ACC
126 ACC
* * * * ** * * * *
44220952 TAGGCCCTTGGTCGTGCGAGAACCTTAGG-CACCACCG-GTACCTAGGGGCTCG-GAT-GTACGG
1 TAGGCCCTTGGTCGTGCGGGAGCC-TCGGACACCATCGACAACCTA--GGCCCGTGGTCGTGCGA
* * * * * *
44221013 GACCCTCGGACACCATCGGTTAA-GTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
63 GAGCCTCGGACACCATCAG-CAACCTAGG-CCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCA
*
44221076 TCC
126 ACC
* ** ** * * * * *
44221079 TCGGTACTTGGAT-GTGAAGGAGCCTCGGGCACCATCGGTAGAA--TAGGCCCTTCGTCATGCGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATC-G-ACAACCTAGGCCCGTGGTCGTGCGA
* * * * * * * * *
44221141 GAGCCTCGGCCACCATCAG-GACCTAGGTGCTTGGATGTACGGGACCCTCGGACACCATCGACAA
63 GAGCCTCGGACACCATCAGCAACCTAGG-CCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAA
*
44221205 -A
127 CC
* * ** ***
44221206 TATGGCCCTTGGTCGAGCGGGAGCCTCGGTCACCATCGGTAACCTAGGCGTTTGGTCGTGCGAGA
1 TA-GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCGTGGTCGTGCGAGA
** * * ** * * * * *
44221271 GCCTC-GAGCACCATTGGC-ACCTGGGCGGTCAGATGTGCGGGAGCCTCAGACACCATCGGCATC
65 GCCTCGGA-CACCATCAGCAACCTAGGC-CTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAAC
44221334 C
128 C
* * * * * * * * * *
44221335 TAGGCCCTTGGTCATGAGGGAGTCTCGGGCACGATC-AGC-ACCTAGGTGCTCG-GAT-TTACGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGA-CAACCTA-G-GCCCGTGGTCGTGCGA
* * * * ** * * *
44221396 GAGCCTTGGACACCATCGGCAAACTAGGCCCGTGGCCGTACGGGAGCCTCGGGCACCATCAGC-A
63 GAGCCTCGGACACCATCAGCAACCTAGG-CCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAA
*
44221460 CT
127 CC
* * * * * * * * *
44221462 TGGGCGCTCGGAT-GTGCGAGAGCGTCAGACACGATCGGTA-AACC-AGGCCCTTGGT-TTGGCG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATC-G-ACAACCTAGGCCCGTGGTCGT-GCG
* * * * * *
44221523 GGAGCCTCGGGCACCATC-GACTACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGAC
62 AGAGCCTCGGACACCATCAG-CAACCTAGG-CCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGC
44221587 -ACC
125 AACC
* ** * * * * *
44221590 TTGGTGCTTGGAT-GTGCGGGAACCGCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCGTGGTCGTGCGAGA
** ** * ** * * * * * *
44221654 GCCT-TAAGCACCATTGGC-ACCTAGGGGCTCAGATGTGTGGGAGCATCGGACACCATCGGCAAA
65 GCCTCGGA-CACCATCAGCAACCTA-GGCCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAAC
44221717 C
128 C
* * * * * * *
44221718 TAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCTTCGGCAAACGAGGTCCTTGGTCGTGC-AGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCGTGGTCGTGCGA-GA
*
44221782 GCCTCAGG-CACCATC-GCCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-A
65 GCCTC-GGACACCATCAG-CAACCTAGG-CCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAA
44221844 CC
127 CC
* * ** *
44221846 TAGGCGCTCGGAT-GTGCGGGAGCCTCGGACACCATC-AGCAACCTAGGCCATTGGTTGTGCGAG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGA-CAACCTAGGCCCGTGGTCGTGCGAG
* * * * * * ** *
44221909 AGCCTCGGGCACCATCGGC-ACCTAGGCGCTCGGATGTACGGGAGCCTCGAACACCATCGGCAAA
64 AGCCTCGGACACCATCAGCAACCTAGGC-CTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAAC
44221973 C
128 C
* ** * * * ** * * *
44221974 TAGGCCCGTGGTCGTGCGGGAGCCTCGGGTACCATCGGC-ACTTGGGTGCTTGGAT-ATAC-AGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCGTGG-TCGTGCGA-G
* * *
44222036 AGCCTCGGACACCATCGGCAAACC-AGGCCCTTGGTCT-TACG-GAAGCCTCAGGCACCATCGGC
64 AGCCTCGGACACCATCAGC-AACCTAGG-CCTTGGT-TGTGCGAG-AGCCTCGGGCACCATCGGC
*
44222098 TACC
125 AACC
* * * * ** * *
44222102 TAGCCCCTTGGTCGTGCGGTAGCCTC-GAGCACCACCGAC-ACCTTGGTGCTTGGAT-GTGCGGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGACAACCTAGGCCCGTGG-TCGTGCGAG
* * * * * *
44222164 AACGTTGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGC-AC
64 AGCCTCGGACACCATCAGCAACCTAGG-CCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAAC
44222228 C
128 C
** * * * * * *
44222229 TAGGGGCTCGGAT-GTACGAGAGCCTCGGAGACCATC-AGCTAA-CTAGGCCCTTGGTCGTGCGG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGA-C-AACCTAGGCCCGTGGTCGTGCGA
* * * * * * * *
44222291 GAGCCTC-GAGCACCATCGGC-ACCTCGGTGCTAGGATGTGAGGGAGCCTCGGGCACCATCGGTA
63 GAGCCTCGGA-CACCATCAGCAACCTAGG-CCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCA
*
44222354 GA-A
126 -ACC
* * * ** ** * * *
44222357 TAGGCCCTTCGTCGTGCGAGAGCCTCGGCCACCATC-AGGACCTAGGTGCTTGGAT-GTGTGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCGTGG-TCGTGCGAGA
* * * * * *
44222420 GCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACC
65 GCCTCGGACACCATCAGCAACCTAGG-CCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAACC
* * * * *
44222485 TAGGCCCTTGGTCGTGCGAGAGCCTC-GAGCACCATTGGC-ACCTAGG-CGGTCGGAT-GTACGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGACAACCTAGGCCCGT-GG-TCGTGCGA
* * * ** * * *
44222546 GGGCCTTGGACACCATC-GACATCCTAGGCCATTGGTCATGCGGGAGTCTCGAGCACCA-CGGGC
63 GAGCCTCGGACACCATCAG-CAACCTAGGCC-TTGGTTGTGCGAGAGCCTCGGGCACCATC-GGC
44222609 -ACC
125 AACC
* * * * * * *
44222612 TAGG-CGTTCGGAT-GTGCGGGAGCCTTGGACACCATCGGCAAACTAGACCTGTGGTCGTG-GGG
1 TAGGCCCTT-GG-TCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCGTGGTCGTGCGAG
* * * * * * * * *
44222674 AAGCCTCAGG-CACCATCGGC-ACTTCA-GCGCTCGGATGTGCGGGAGCGTCAGACACCATCAGC
64 -AGCCTC-GGACACCATCAGCAACCT-AGGC-CTTGGTTGTGCGAGAGCCTCGGGCACCATCGGC
* *
44222736 TACG
125 AACC
* ** * ** * *
44222740 TAGGCCCTTGGTCGCGCGGGAGCCT-TTAGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGACAACCTAGGCCCGTGG-TCGTGCGAG
* * * * ** * ** * **
44222802 AACCACGGACACCATCGGCAACCTAGACCCTTGGTCATGAGAGAGCCTTAGGCATCATCGG-TGC
64 AGCCTCGGACACCATCAGCAACCTAG-GCCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAAC
44222866 C
128 C
** * * * * * *
44222867 TAGGGGCTCGGAT-GTGCGAGAGCATCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCAAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCGTGGTCGTGCGAGA
* * * * ** * *
44222931 GCCTCGGGA-ACCATCGGC-ACCT-GGACACTCGGATGTGCGGGAGATTTGGACACCATTC-GCA
65 GCCTC-GGACACCATCAGCAACCTAGG-C-CTTGGTTGTGCGAGAGCCTCGGGCACCA-TCGGCA
*
44222992 AGC
126 ACC
* * * * * * ** *
44222995 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAACATCGGC-CCCTCGGTGCTATGAT-GTGC-AGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGACAACCTAGG-CCCGTGGTCGTGCGA-G
** *** * * * * * * *
44223057 AGCCTCAAACAATGTCGGCATCCTAGGCCCTTGGTCGTGCGGGAGTCTCGAGCACCATCGAC-AC
64 AGCCTCGGACACCATCAGCAACCTAGG-CCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAAC
44223121 C
128 C
* ** * * * * * * * *
44223122 TTGGTGCTTGGAT-GTGCGGGAACCTCAGACACCATTGGCAACCTAGGCCCTTGGTCATGTGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCGTGGTCGTGCGAGA
* * * * * * * * * *
44223186 GCCTCGGGCACCATCGGC-ACCTAGGGGCTCGGATGTGCGGGAGGCTCGGACACCATTGGCAAAC
65 GCCTCGGACACCATCAGCAACCTA-GGCCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAACC
* * * * * * ** * * *
44223250 TAAGCCCTTGGTCGCGTGAGAGCCTCGGGCACCATTG-GTACCTCGGTGCTCG-GAT-GTGCGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGACAACCT-AG-GCCCGTGGTCGTGCGAG
** * * * *
44223312 AGCCTCAGG-CACCATTGGTAGA-ATAGGCCCTTCGTTGTGCGAGAGCCTCGGGCACCATCAGC-
64 AGCCTC-GGACACCATCAGCA-ACCTAGG-CCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCA
44223374 ACC
126 ACC
* ** * * *
44223377 TTGGTGGCTCGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCT
1 TAGG-CCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGACAACCT
44223422 TAGTGCTTGG
Statistics
Matches: 2218, Mismatches: 586, Indels: 355
0.70 0.19 0.11
Matches are distributed among these distances:
126 29 0.01
127 672 0.30
128 1348 0.61
129 163 0.07
130 6 0.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.18
Consensus pattern (128 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCGTGGTCGTGCGAGAG
CCTCGGACACCATCAGCAACCTAGGCCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAACC
Found at i:44220925 original size:213 final size:211
Alignment explanation
Indices: 44220414--44223203 Score: 837
Period size: 213 Copynumber: 13.1 Consensus size: 211
44220404 TTGGATGTGT
*
44220414 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTC-AGGCACCATCGG
1 GGGAGCCTCGGACACCATCGGCTAACTAGGCCCTTGGTCGTGCGGGAGCCTCGA-GCACCATCGG
* * * *
44220478 CAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGACACCTTCGGCAAACGAGG-TCCTTGGTCGT
65 C-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCT-CTTGGTCGT
* * * * * * * *
44220541 GCAGGAGCCTCAGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGAGAGCCTCGGGCACCATC
127 GCGGGAGCCTCAGGCACCATCGGC-ACTTGGGCGCTCAGAT-GTGCGGGAGCCTCGGACACCATC
* * * *
44220605 GGCACCTGGACGCTCGGAT-GTGC
190 GGAACC-GGGCCCTTGG-TCGTGC
* * * * *
44220628 GGGAGCCTCGGACACCATCAGC-AACCTAGGCCTTTGGTTGTGCGAGAGCCTCGGGCACCATCGG
1 GGGAGCCTCGGACACCATCGGCTAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGG
* ** * * *
44220692 CACCTAAGCGCTCAGATGTGCGGGAGCCTCGGACACCATCGACAAACTAGGCTCGTGGTCGTGTG
65 CACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCTCTTGGTCGTGCG
* * * * * *
44220757 GGAGCCTCGGGTACCATCAGCACTTGGGCGCTCAAATGTGTGGGAGCGTCGGACACCATCGGAAA
130 GGAGCCTCAGGCACCATCGGCACTTGGGCGCTCAGATGTGCGGGAGCCTCGGACACCATCGG--A
*
44220822 ACCGGGCCCTTGGTCTTGC
193 ACCGGGCCCTTGGTCGTGC
* * *
44220841 GGGAGCCTCGGGCACCATCGGCTAACTAGCCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC
1 GGGAGCCTCGGACACCATCGGCTAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC
* * * * * * *
44220906 ACCTTGGTGCTTGGATGTGCGGGAACGC-CGAACACCATTGGCAACCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCGCTTGGATGTGCGGGAGC-CTCGGACACCATCGGCAAACTAGGCTCTTGGTCGTGCG
* * * * * * * * *
44220970 AGAACCTTAGGCACCACCGGTACCTAGGG-GCTCGGATGTACGGGACCCTCGGACACCATCGGTT
130 GGAGCCTCAGGCACCATCGGCA-CTTGGGCGCTCAGATGTGCGGGAGCCTCGGACACCATCGG--
***
44221034 AAGTAGGCCCTTGGTCGTGC
192 AACCGGGCCCTTGGTCGTGC
* * * ** ** *
44221054 GGGAGCCTCGGGCACCATCGGCT-CCTCGGTACTTGGAT-GTGAAGGAGCCTCGGGCACCATCGG
1 GGGAGCCTCGGACACCATCGGCTAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGG
* ** * * * * * *
44221117 TAGAATAGGCCCTTCG-TCATGCGAGAGCCTCGGCCACCATCAGG--ACCTAGG-TGCTTGGAT-
65 CA-CCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATC-GGCAAACTAGGCT-CTTGG-TC
* * * * * * * * *
44221177 GTACGGGACCCTC-GGACACCATCGACAAATAT-GGCCCT-TGGTCGAGCGGGAGCCTCGGTCAC
125 GTGCGGGAGCCTCAGG-CACCATCGGC-ACT-TGGGCGCTCAGAT-GTGCGGGAGCCTCGGACAC
* **
44221239 CATCGGTAACCTAGGCGTTTGGTCGTGC
186 CATCGG-AACC-GGGCCCTTGGTCGTGC
* * * * ** * *
44221267 GAGAGCCTC-GAGCACCATTGGC-ACCTGGGCGGTCAGAT-GTGCGGGAGCCTC-AGACACCATC
1 GGGAGCCTCGGA-CACCATCGGCTAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGAG-CACCATC
* * * * * * * * *
44221328 GGCATCCTAGGCCCTTGG-TCATGAGGGAGTCTCGGGCACGATCAGC-ACCTAGG-TGCTCGGAT
63 GGCA-CCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCT-CTTGG-T
* * * * * * ** * *
44221390 -TTACGGGAGCCT-TGGACACCATCGGCAAAC-TAGGCCCGT-GGCCGTACGGGAGCCTCGGGCA
124 CGTGCGGGAGCCTCAGG-CACCATCGGC--ACTTGGGCGC-TCAGATGTGCGGGAGCCTCGGACA
* * * * *
44221451 CCATCAGCACTTGGGCGCTCGGAT-GTGC
185 CCATCGGAAC-CGGGCCCTTGG-TCGTGC
* * * * * * *
44221479 GAGAGCGTCAGACACGATCGG-TAAACCAGGCCCTTGGT-TTGGCGGGAGCCTCGGGCACCATCG
1 GGGAGCCTCGGACACCATCGGCT-AACTAGGCCCTTGGTCGT-GCGGGAGCCTCGAGCACCATCG
* * * * * *
44221542 ACTACCTAGGCCCTTGG-TCGTGCGAGAGCCTC-GAGCACCATCGAC-ACCTTGG-TGCTTGGAT
64 GC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCT-CTTGG-T
* * * * * * * * * **
44221603 -GTGCGGGAACCGC-GGACACCATCGGCAACCTAGGCCCT-TGGTCATGCGAGAGCCT-TAAGCA
124 CGTGCGGGAGCCTCAGG-CACCATCGGC-ACTTGGGCGCTCAGAT-GTGCGGGAGCCTCGGA-CA
* * * * * *
44221664 CCATTGGCACCTAGGG-GCTCAGAT-GTGT
185 CCATCGGAACC--GGGCCCT-TGGTCGTGC
* * * *
44221692 GGGAGCATCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCG-GACACCTTCGG
1 GGGAGCCTCGGACACCATCGGCTAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CACCATCGG
* * * * * *
44221756 CAAACGAGGTC-CTTGG-TCGTGCAGGAGCCTCAGG-CACCATCGCCAACCTAGGCCCTTGGTCG
65 C-ACCTAGG-CGCTTGGAT-GTGCGGGAGCCTC-GGACACCATCGGCAAACTAGGCTCTTGGTCG
* * * * *
44221818 TGCGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCA
126 TGCGGGAGCCTCAGGCACCATCGGCACTTGGGCGCTCAGATGTGCGGGAGCCTCGGACACCATC-
* * * *
44221883 GCAACCTAGGCCATTGGTTGTGC
190 GGAACC-GGGCCCTTGGTCGTGC
* * * * * * *
44221906 GAGAGCCTCGGGCACCATCGGC-ACCTAGGCGCTCGGAT-GTACGGGAGCCTCGAACACCATCGG
1 GGGAGCCTCGGACACCATCGGCTAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGG
* * * ** * * *
44221969 CAAACTAGGCCCGTGG-TCGTGCGGGAGCCTCGGGTACCATCGGC--ACTTGGGTGCTTGGAT-A
65 C-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCT-CTTGG-TCG
* * ** * * * * * *
44222030 TACAGGAGCCTC-GGACACCATCGGCAAAC-CAGGCCCT-TGGTCTTACGGAAGCCTCAGG-CAC
126 TGCGGGAGCCTCAGG-CACCATCGGC--ACTTGGGCGCTCAGAT-GTGCGGGAGCCTC-GGACAC
* * *
44222091 CATCGGCTACCTAGCCCCTTGGTCGTGC
186 CATCGG-AACC-GGGCCCTTGGTCGTGC
* * * * * ** * * *
44222119 GGTAGCCTC-GAGCACCACCGAC-ACCTTGGTGCTTGGAT-GTGCGGGAACGTTG-GACACCATC
1 GGGAGCCTCGGA-CACCATCGGCTAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGAG-CACCATC
* * * ** *
44222180 GGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCAGG-CACCATCGGC-ACCTAGGGGCTCGGAT
63 GGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTC-GGACACCATCGGCAAACTAGGCTCTTGG-T
* * * * * * * *
44222242 -GTACGAGAGCCTC-GGAGACCATCAGCTAAC-TAGGCCCT-TGGTCGTGCGGGAGCCTC-GAGC
124 CGTGCGGGAGCCTCAGG-CACCATCGGC--ACTTGGGCGCTCAGAT-GTGCGGGAGCCTCGGA-C
* * ** * *
44222302 ACCATCGGCACCTCGGTGCTAGGAT-GTGA
184 ACCATCGGAACC-GGGCCCTTGG-TCGTGC
* * * *
44222331 GGGAGCCTCGGGCACCATCGG-TAGAATAGGCCCTTCGTCGTGCGAGAGCCTCG-GCCACCATCA
1 GGGAGCCTCGGACACCATCGGCTA-ACTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CACCATC-
* * * *
44222394 GG-ACCTAGGTGCTTGGATGTGTGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTG
63 GGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCTCTTGGTCGTG
* * * * * * *
44222458 CGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGAGAGCCTC-GAGCACCATT
128 CGGGAGCCTCAGGCACCATCGGC-ACTTGGGCGCTCAGAT-GTGCGGGAGCCTCGGA-CACCATC
* * ** * *
44222521 GGCACCTAGGCGGTCGGAT-GTAC
190 GGAACC-GGGCCCTTGG-TCGTGC
* * * * * *
44222544 GAGG-GCCTTGGACACCATCGAC-ATCCTAGGCCATTGGTCATGCGGGAGTCTCGAGCACCA-CG
1 G-GGAGCCTCGGACACCATCGGCTA-ACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC-
* *
44222606 GGCACCTAGGCG-TTCGGATGTGCGGGAGCCTTGGACACCATCGGCAAACTAGAC-CTGTGGTCG
63 GGCACCTAGGCGCTT-GGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCTCT-TGGTCG
** * * *
44222669 TG-GGGAAGCCTCAGGCACCATCGGCACTTCAGCGCTCGGATGTGCGGGAGCGTCAGACACCATC
126 TGCGGG-AGCCTCAGGCACCATCGGCACTTGGGCGCTCAGATGTGCGGGAGCCTCGGACACCATC
** *
44222733 AGCTA-CGTAGGCCCTTGGTCGCGC
190 -GGAACCG--GGCCCTTGGTCGTGC
** * * * ** * *
44222757 GGGAGCCT-TTAGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGGAACCACG-GACACCATC
1 GGGAGCCTCGGA-CACCATCGGCTAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGAG-CACCATC
* * * * * * * *** ** *
44222818 GGCAACCTAGACCCTTGG-TCATGAGAGAGCCTTAGG-CATCATCGG-TGCCTAGGGGCTCGGAT
63 GGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCC-TCGGACACCATCGGCAAACTAGGCTCTTGG-T
* * * * * * * **
44222880 -GTGCGAGAGCATC-GGACACCATCGGCAACCTAGGCCCT-TGGTCGTGCAAGAGCCTCGGGA-A
124 CGTGCGGGAGCCTCAGG-CACCATCGGC-ACTTGGGCGCTCAGAT-GTGCGGGAGCCTC-GGACA
* * * *
44222941 CCATCGGCACCTGGACACTCGGAT-GTGC
185 CCATCGGAACC-GGGCCCTTGG-TCGTGC
** * * *
44222969 GGGAGATTTGGACACCATTC-GC-AAGCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAACATCG
1 GGGAGCCTCGGACACCA-TCGGCTAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCG
* * * * ** *** ** *
44223032 GCCCCTCGGTGCTAT-GATGTGCAGGAGCCTCAAACAATGTCGGCATCCTAGGCCCTTGGTCGTG
64 GCACCTAGGCGCT-TGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCTCTTGGTCGTG
* * * ** * * *
44223096 CGGGAGTCTC-GAGCACCATCGACACCTT-GGTGCTTGGATGTGCGGGAACCTCAGACACCATTG
128 CGGGAGCCTCAG-GCACCATCGGCA-CTTGGGCGCTCAGATGTGCGGGAGCCTCGGACACCATCG
* * *
44223159 GCAACCTAGGCCCTTGGTCATGT
191 G-AACC-GGGCCCTTGGTCGTGC
*
44223182 GGGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGACACCATCGGC
44223204 ACCTAGGGGC
Statistics
Matches: 1953, Mismatches: 480, Indels: 287
0.72 0.18 0.11
Matches are distributed among these distances:
211 16 0.01
212 401 0.21
213 1359 0.70
214 174 0.09
215 3 0.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (211 bp):
GGGAGCCTCGGACACCATCGGCTAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC
ACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCTCTTGGTCGTGCGG
GAGCCTCAGGCACCATCGGCACTTGGGCGCTCAGATGTGCGGGAGCCTCGGACACCATCGGAACC
GGGCCCTTGGTCGTGC
Found at i:44220952 original size:298 final size:295
Alignment explanation
Indices: 44220314--44223463 Score: 1742
Period size: 298 Copynumber: 10.6 Consensus size: 295
44220304 CGGTAGCATA
** *
44220314 GGCCCTTGGTCGTGCAAGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCC
1 GGCCCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCC
* * * * * *
44220379 TCGGGCACCATTGACACCTAAGTGCTTGGATGTGTGGGAGCCTCGGACACCATCGGCAAACTAGG
65 TCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGG
* * * * *
44220444 CCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGAGAGCCT
130 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCGCTCAGAT-GTGCGGGAGCCT
* * * * *
44220508 CGGACACCTTCGGCAAACGAGGTCCTTGGTCGTGCAGGAGCCTCAGGCACCATCGGCAACCTAGG
193 CGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA-CTAGG
* * *
44220573 CCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCT
257 CCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCT
* * * * *
44220612 GGACGCTCGGATGTGCGGGAGCCTCGGACACCATCAGCAACCTAGGCCTTTGGTTGTGCGAGAGC
1 GG-CCCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGC
* * *
44220677 CTCGGGCACCATCGGCACCTAAGCGCTCAGATGTGCGGGAGCCTCGGACACCATCGACAAACTAG
64 CTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAG
* * * * * * * * * *
44220742 GCTCGTGGTCGTGTGGGAGCCTCGGGTACCATCAGCACTTGGGCGCTCAAATGTGTGGGAGCGTC
129 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTCAGATGTGCGGGAGCCTC
* ** * *
44220807 GGACACCATCGGAAAACCGGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCGGCTAACTAGCC
194 GGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AACTAGGC
44220872 CCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTT
258 CCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACC-T
** * * * *
44220911 GGTGCTTGGATGTGCGGGAACGC-CGAACACCATTGGCAACCTAGGCCCTTGGTCGTGCGAGAAC
1 GGCCCTTGG-TGTGCGGGAGC-CTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGC
** * * * * * ** *
44220975 CTTAGGCACCACCGGTACCTAGGGGCTCGGATGTACGGGACCCTCGGACACCATCGGTTAAGTAG
64 CTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAG
* * ** ** **
44221040 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCTCCTCGGTACTTGGATGTGAAGGAGCCTC
129 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTCAGATGTGCGGGAGCCTC
* * * * * * *
44221105 GGGCACCATCGGTAGAA-TAGGCCCTTCGTCATGCGAGAGCCTCGGCCACCATCAGG-ACCTAGG
194 GGACACCATCGGCA-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGCAACTAGG
** * * **
44221168 TGCTTGGAT-GTACGGGACCCTCG-GACACCATCGACAAATAT
257 CCCTTGG-TCGTGCGGGAGCCTCGAG-CACCATCGAC--ACCT
* * * **
44221209 GGCCCTTGGTCGAGCGGGAGCCTCGGTCACCATCGGTAACCTAGGCGTTTGGTCGTGCGAGAGCC
1 GGCCCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCC
* * * * * * **
44221274 TCGAGCACCATTGGCACCTGGGCGGTCAGATGTGCGGGAGCCTCAGACACCATCGGCATCCTAGG
65 TCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGG
* * * * * * * * * *
44221339 CCCTTGGTCATGAGGGAGTCTCGGGCACGATCAGCACCTAGGTGCTCGGATTTACGGGAGCCTTG
130 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTCAGATGTGCGGGAGCCTCG
* * * * * *
44221404 GACACCATCGGCAAACTAGGCCCGTGGCCGTACGGGAGCCTCGGGCACCATCAGC-ACTTGGGCG
195 GACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC-TAGGCC
* * * * * *
44221468 CTCGGAT-GTGCGAGAGCGTC-AGACACGATCGGTAAACCA
259 CTTGG-TCGTGCGGGAGCCTCGAG-CACCATC-G-ACACCT
* * * *
44221507 GGCCCTTGGTTTGGCGGGAGCCTCGGGCACCATCGACTACCTAGGCCCTTGGTCGTGCGAGAGCC
1 GGCCCTTGGTGT-GCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCC
* * * * * * * *
44221572 TCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCGCGGACACCATCGGCAACCTAGG
65 TCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGG
* * *** * * * *
44221637 CCCTTGGTCATGCGAGAGCCTTAAGCACCATTGGCACCTAGGGGCTCAGATGTGTGGGAGCATCG
130 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTCAGATGTGCGGGAGCCTCG
* * * * *
44221702 GACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCTTCGGCAAACGAGGTC
195 GACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AACTAGGCC
* *
44221767 CTTGGTCGTGCAGGAGCCTC-AGGCACCATCGCCAACCT
259 CTTGGTCGTGCGGGAGCCTCGA-GCACCATCGAC-ACCT
* * * * *
44221805 AGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCGCTCGGAT-GTGCGGGAG
1 -GGCCCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAG
* * * * * * *
44221868 CCTCGGACACCATCAGCAACCTAGGC-CATTGGTTGTGCGAGAGCCTCGGGCACCATCGGC-ACC
63 CCTCGGGCACCATCGGC-ACCTAGGCGC-TCGGATGTGCGGGAGCCTCGGACACCATCGGCAAAC
* * * ** * * *
44221931 TAGGCGCTCGGAT-GTACGGGAGCCTCGAACACCATCGGCAAACTAGGC-C-CGTGGTCGTGCGG
126 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCGCTC-AGAT-GTGCGG
** * ** * * * *
44221993 GAGCCTCGGGTACCATCGGC--ACTTGGGTGCTTGGAT-ATACAGGAGCCTCGGACACCATCGGC
187 GAGCCTCGGACACCATCGGCAAAC-TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
* * * * *
44222055 AAACCAGGCCCTTGGTCTTACGGAAGCCTC-AGGCACCATCGGCTACCT
250 -AACTAGGCCCTTGGTCGTGCGGGAGCCTCGA-GCACCATCGAC-ACCT
* * * * * ** *
44222103 AGCCCCTTGGTCGTGCGGTAGCCTC-GAGCACCACCGAC-ACCTTGGTGCTTGGAT-GTGCGGGA
1 -GGCCCTTGGT-GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGA
* * * * * * *
44222165 ACGTTGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCAGG-CACCATCGGC-A
62 GCCTCGGGCACCATCGGC-ACCTAGGCGCTCGGAT-GTGCGGGAGCCTC-GGACACCATCGGCAA
* ** * * * * * * * *
44222227 CCTAGGGGCTCGGAT-GTACGAGAGCCTCGGAG-ACCATCAGCTAACTAGGCCCT-TGGTCGTGC
124 ACTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-GCACCATCGGC-ACCTAGGCGCTCAGAT-GTGC
* * ** * *
44222289 GGGAGCCTC-GAGCACCATCGGC-ACCTCGGTGCTAGGAT-GTGAGGGAGCCTCGGGCACCATCG
185 GGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCG
* * * * *
44222351 GTAGAATAGGCCCTTCGTCGTGCGAGAGCCTCG-GCCACCATC-AGGACCT
248 GCA-ACTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CACCATCGA-CACCT
** * * * *
44222400 AGGTGCTTGGATGTGTGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGC
1 -GGCCCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGC
* * * * * *
44222465 CTCAGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTC-GAGCACCATTGGC-ACC
64 CTCGGGCACCATCGGC-ACCTAGGCGCTCGGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAAAC
** * * * * * * * *
44222527 TAGGCGGTCGGAT-GTACGAGG-GCCTTGGACACCATCGACATCCTAGGC-CAT-TGGTCATGCG
126 TAGGCCCTTGG-TCGTGCG-GGAGCCTCGGGCACCATCGGCA-CCTAGGCGC-TCAGAT-GTGCG
* * * * *
44222588 GGAGTCTC-GAGCACCA-CGGGC-ACCTAGG-CGTTCGGAT-GTGCGGGAGCCTTGGACACCATC
186 GGAGCCTCGGA-CACCATC-GGCAAACTAGGCCCTT-GG-TCGTGCGGGAGCCTCGGGCACCATC
* * *
44222648 GGCAAACTA-GACCTGTGGTCGTG-GGGAAGCCTC-AGGCACCATCGGCACTT
247 GGC-AACTAGGCCCT-TGGTCGTGCGGG-AGCCTCGA-GCACCATCGACACCT
* * * * * * * * * *
44222698 CAGCGCTCGGATGTGCGGGAGCGTCAGACACCATCAGCTACGTAGGCCCTTGGTCGCGCGGGAGC
1 -GGCCCTTGG-TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGC
*** * * * * * * *
44222763 CTTTAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCACGGACACCATCGGCAACCTAG
64 CTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAG
* * * * ** * ** * * * *
44222828 ACCCTTGGTCATGAGAGAGCCTTAGGCATCATCGGTGCCTAGGGGCTCGGATGTGCGAGAGCATC
129 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTCAGATGTGCGGGAGCCTC
* ** * *
44222893 GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGAACCATCGGCACCT-GGAC
194 GGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG-C
* * ** * *
44222957 ACTCGGAT-GTGCGGGAGATTTG-GACACCATTCG-CAAGCT
258 CCTTGG-TCGTGCGGGAGCCTCGAG-CACCA-TCGAC-ACCT
* * * * ** *
44222996 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCAACATCGGC-CCCTCGGTGCTATGAT-GTGC-AGGA
1 -GGCCCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCT-TGGTCGTGCGA-GA
*** *** * * * *
44223058 GCCTCAAACAATGTCGGCATCCTAGGCCCTTGG-TCGTGCGGGAGTCTC-GAGCACCATCGAC-A
62 GCCTCGGGCACCATCGGCA-CCTAGGCGCTCGGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAA
* * ** * * * * * **
44223120 CCTTGGTGCTTGGAT-GTGCGGGAACCTCAGACACCATTGGCAACCTAGGCCCTTGGTCATGT--
124 ACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCGCTCAG--ATGTGC
* * ** * * * *
44223182 GGGAGCCTCGGGCACCATCGGC-ACCTAGGGGCTCGGAT-GTGCGGGAGGCTCGGACACCATTGG
185 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
* * * * * * **
44223245 CAAACTAAGCCCTTGGTCGCGTGAGAGCCTCGGGCACCATTGGTACCT
249 C-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCT
** * * * * * * *
44223293 CGGTGCTCGGATGTGCGAGAGCCTCAGG-CACCATTGGTAGA-ATAGGCCCTTCGTTGTGCGAGA
1 -GGCCCTTGG-TGTGCGGGAGCCTC-GGACACCATCGGCA-ACCTAGGCCCTTGGTCGTGCGAGA
* * * * *
44223356 GCCTCGGGCACCATCAGCACCTTGGTGGCTCGGATGTACGGGAGCCTCGGACACCATCGGCAACC
62 GCCTCGGGCACCATCGGCACCTAGG-CGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAAAC
* *
44223421 TTAGTG--CTTGGAT-GTGCGGGGGCCTCGAGCACCATCGGCACCT
126 -TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCT
44223464 TGGGGATGTG
Statistics
Matches: 2222, Mismatches: 514, Indels: 232
0.75 0.17 0.08
Matches are distributed among these distances:
296 3 0.00
297 285 0.13
298 1602 0.72
299 319 0.14
300 12 0.01
301 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.18
Consensus pattern (295 bp):
GGCCCTTGGTGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCT
CGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGC
CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTCAGATGTGCGGGAGCCTCGG
ACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCT
TGGTCGTGCGGGAGCCTCGAGCACCATCGACACCT
Found at i:44222775 original size:383 final size:380
Alignment explanation
Indices: 44220331--44223418 Score: 2122
Period size: 383 Copynumber: 8.1 Consensus size: 380
44220321 GGTCGTGCAA
* * * * *
44220331 GAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGT-GCGAGAGCCTCGGGCACCATTGACA
1 GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGGGGA-AGCCTCGGGCACCATCGGCA
* * *
44220395 CCTAAGTGCTTGGATGTGTGGGAGCCTCGGACACCATCGGCAAAC-TAGGCCCTTGGTCGTGCGG
65 CCT-AGCGCTCGGATGTGCGGGAGCCTCGGACACCATC-GC-AACGTAGGCCCTTGGTCGTGCGG
* * *
44220459 GAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCTTCGGCAA
127 GAGCCTC-GGCACCATCGGC-ACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
* * * *
44220524 ACGAGGTCCTTGGTCGTGCAGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG
190 CCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG
* * *
44220589 AGCCTCGGGCACCATCGGCACCT-GGACGCTCGGATGTGCGGGAGCCTCGGACACCATC-AGCAA
255 AGCCTCGAGCACCATCGGCACCTAGG-CGCTCGGATGTACGGGAGCCTTGGACACCATCGA-CAA
* * * *
44220652 CCTAGGCCTTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCACCTAAGCGCTCAGATGTGCGG
318 CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGG
* * * * *
44220715 GAGCCTCGGACACCATCGACAAACTAGGCTCGTGGTCGTGTGGG-AGCCTCGGGTACCATCAGCA
1 GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTG-GGGAAGCCTCGGGCACCATCGGCA
* * ** * * * *
44220779 CTTGGGCGCTCAAATGTGTGGGAGCGTCGGACACCATCGGAAAACCG--GGCCCTTGGTCTTGCG
65 CCT-AGCGCTCGGATGTGCGGGAGCCTCGGACACCATC-G-CAA-CGTAGGCCCTTGGTCGTGCG
* * * *
44220842 GGAGCCTCGGGCACCATCGGCTAACTAGCCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCGAC
126 GGAGCCTC-GGCACCATCGGC-ACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGC
* ** * * *
44220906 -ACCTTGGTGCTTGGAT-GTGCGGGAACGC-C-GAACACCATTGGCAACCTAGGCCCTTGGTCGT
188 AACCTAGGCCCTTGG-TCGTGCGGGAGC-CTCAG-GCACCATCGGCAACCTAGGCCCTTGGTCGT
* * * * * * *
44220967 GCGAGAACCT-TAGGCACCACCGGTACCTAGGGGCTCGGATGTACGGGACCCTCGGACACCATCG
250 GCGAGAGCCTCGA-GCACCATCGGCACCTAGGCGCTCGGATGTACGGGAGCCTTGGACACCATC-
** * * * * ** *
44221031 GTTAA-GTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCTCCTCGGTACTTGGATGTG
313 GACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTG
**
44221095 AAG
378 CGG
* * * * * *
44221098 GAGCCTCGGGCACCATCGGTAGAA-TAGGCCCTTCGTCAT-GCGAGAGCCTCGGCCACCATCAGG
1 GAGCCTCGGACACCATCGGCA-AACTAGGCCCTTGGTCGTGGGGA-AGCCTCGGGCACCATC-GG
* * * * * *
44221161 -ACCTAGGTGCTTGGATGTACGGGACCCTCGGACACCATCGACAA-ATATGGCCCTTGGTCGAGC
63 CACCTA-GCGCTCGGATGTGCGGGAGCCTCGGACACCATCG-CAACGTA-GGCCCTTGGTCGTGC
* * * *
44221224 GGGAGCCTCGGTCACCATCGGTAACCTAGGCGTTTGGTCGTGCGAGAGCCTC-GAGCACCATTGG
125 GGGAGCCTCGG-CACCATCGG-CACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGG
* ** * * * * *
44221288 C-ACCTGGGCGGTCAGAT-GTGCGGGAGCCTCAGACACCATCGGCATCCTAGGCCCTTGGTCATG
187 CAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * * * * * *
44221351 AGGGAGTCTCGGGCACGATCAGCACCTAGGTGCTCGGATTTACGGGAGCCTTGGACACCATCGGC
251 CGAGAGCCTCGAGCACCATCGGCACCTAGGCGCTCGGATGTACGGGAGCCTTGGACACCATCGAC
* * * * * * * * *
44221416 AAACTAGGCCCGTGGCCGTACGGGAGCCTCGGGCACCATCAGCACTTGGGCGCTCGGATGTGCGA
316 AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGG
* * * * * * * *
44221481 GAGCGTCAGACACGATCGGTAAACCAGGCCCTTGGT-TTGGCGGGAGCCTCGGGCACCATCGACT
1 GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGG-GGAAGCCTCGGGCACCATCGGC-
* * * * * **
44221545 ACCTAGGCCCTTGG-TCGTGCGAGAGCCTC-GAGCACCATCG-ACACCTTGGTGCTTGGAT-GTG
64 ACCTA-GCGCTCGGAT-GTGCGGGAGCCTCGGA-CACCATCGCA-ACGTAGGCCCTTGG-TCGTG
* * * * * ** *
44221606 CGGGAACCGCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCT-TAAGCACCATTG
124 CGGGAGCCTCGG-CACCATCGGC-ACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGA-CACCATCG
** * * * * *
44221670 GC-ACCTAGGGGCTCAGAT-GTGTGGGAGCATC-GGACACCATCGGCAAACTAGGCCCTTGGTCG
186 GCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCAGG-CACCATCGGCAACCTAGGCCCTTGGTCG
* * * * * * *
44221732 TGCGAGAGCCTCG-GACACCTTCGGCAAACGAGGTC-CTTGG-TCGTGCAGGAGCCTCAGG-CAC
249 TGCGAGAGCCTCGAG-CACCATCGGC-ACCTAGG-CGCTCGGAT-GTACGGGAGCCT-TGGACAC
*
44221793 CATCGCCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGA
309 CATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGA
44221858 TGTGCGG
374 TGTGCGG
* * * * *
44221865 GAGCCTCGGACACCATCAGCAACCTAGGCCATTGGTTGT-GCGAGAGCCTCGGGCACCATCGGCA
1 GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGGGGA-AGCCTCGGGCACCATCGGCA
* * *
44221929 CCTAGGCGCTCGGATGTACGGGAGCCTCGAACACCATCGGCAAAC-TAGGCCCGTGGTCGTGCGG
65 CCTA-GCGCTCGGATGTGCGGGAGCCTCGGACACCATC-GC-AACGTAGGCCCTTGGTCGTGCGG
* * * * * * *
44221993 GAGCCTCGGGTACCATCGGCACTTGGGTGCTTGGAT-ATACAGGAGCCTCGGACACCATCGGCAA
127 GAGCCTC-GGCACCATCGGCACCTAGGCGCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGC-A
* * * * *
44222057 ACC-AGGCCCTTGGTCTTACGGAAGCCTCAGGCACCATCGGCTACCTAGCCCCTTGGTCGTGCG-
189 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
* * * * * * * * *
44222120 GTAGCCTCGAGCACCACCGACACCTTGGTGCTTGGATGTGCGGGAACGTTGGACACCATCGGCAA
254 G-AGCCTCGAGCACCATCGGCACCTAGGCGCTCGGATGTACGGGAGCCTTGGACACCATCGACAA
* * * *
44222185 CCTAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCACCTAGGGGCTCGGATGTACGA
318 CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGG
* * * *
44222248 GAGCCTCGGAGACCATCAGCTAACTAGGCCCTTGGTCGTGCGGG-AGCCTCGAGCACCATCGGCA
1 GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTG-GGGAAGCCTCGGGCACCATCGGCA
* * * * * * * * *
44222312 CCTCGGTGCTAGGATGTGAGGGAGCCTCGGGCACCATCGGTAGA-ATAGGCCCTTCGTCGTGCGA
65 CCT-AGCGCTCGGATGTGCGGGAGCCTCGGACACCATC-GCA-ACGTAGGCCCTTGGTCGTGCGG
* * *
44222376 GAGCCTCGGCCACCATCAGG-ACCTAGGTGCTTGGAT-GTGTGGGAGCCTCAGACACCATCGGCA
127 GAGCCTCGG-CACCATC-GGCACCTAGGCGCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCA
*
44222439 AACTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
189 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
* * *
44222504 GAGCCTCGAGCACCATTGGCACCTAGGCGGTCGGATGTACGAGG-GCCTTGGACACCATCGACAT
254 GAGCCTCGAGCACCATCGGCACCTAGGCGCTCGGATGTACG-GGAGCCTTGGACACCATCGACAA
* * * * * *
44222568 CCTAGGCCATTGGTCATGCGGGAGTCTCGAGCACCA-CGGGCACCTAGGCGTTCGGATGTGCGG
318 CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC-GGCACCTAGGCGCTCGGATGTGCGG
* * *
44222631 GAGCCTTGGACACCATCGGCAAACTA-GACCTGTGGTCGTGGGGAAGCCTCAGGCACCATCGGCA
1 GAGCCTCGGACACCATCGGCAAACTAGGCCCT-TGGTCGTGGGGAAGCCTCGGGCACCATCGGCA
* * * * *
44222695 CTTCAGCGCTCGGATGTGCGGGAGCGTCAGACACCATCAGCTACGTAGGCCCTTGGTCGCGCGGG
65 CCT-AGCGCTCGGATGTGCGGGAGCCTCGGACACCATC-GCAACGTAGGCCCTTGGTCGTGCGGG
** * * * * *
44222760 AGCCTTTAGCACCATCGACACCTTGGTGCTTGGAT-GTGCGGGAACCACGGACACCATCGGCAAC
128 AGCC-TCGGCACCATCGGCACCTAGGCGCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAAC
* * * * * * ** ** *
44222824 CTAGACCCTTGGTCATGAGAGAGCCTTAGGCATCATCGG-TGCCTAGGGGCTCGGAT-GTGCGAG
191 CTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAG
* * * * ** * *
44222887 AGCATCG-GACACCATCGGCAACCTAGGCCCTTGG-TCGTGCAAGAGCCTCGGGA-ACCATCGGC
255 AGCCTCGAG-CACCATCGGC-ACCTAGGCGCTCGGAT-GTACGGGAGCCT-TGGACACCATCGAC
* * * ** * * * * *
44222949 -ACCT-GGACACTCGGAT-GTGCGGGAGATTTGGACACCATTC-GCAAGCTAGGCCCTTGG-TCG
316 AACCTAGG-CCCTTGG-TCGTGCGAGAGCCTCGGGCACCA-TCGGC-ACCTAGGCGCTCGGAT-G
44223009 TGCGG
376 TGCGG
* * ** * ** * * *** ***
44223014 GAGCCTCGGGCAACATCGGC-CCCTCGGTGCTATGAT-GTGCAGG-AGCCTCAAACAATGTCGGC
1 GAGCCTCGGACACCATCGGCAAACTAGGCCCT-TGGTCGTG-GGGAAGCCTCGGGCACCATCGGC
* * * * * **
44223076 ATCCTAGGCCCTTGG-TCGTGCGGGAGTCTC-GAGCACCATCG-ACACCTTGGTGCTTGGAT-GT
64 A-CCTA-GCGCTCGGAT-GTGCGGGAGCCTCGGA-CACCATCGCA-ACGTAGGCCCTTGG-TCGT
* * * * * * *
44223137 GCGGGAACCTCAGACACCATTGGCAACCTAGGCCCTTGGTCATGTGGGAGCCTCGGGCACCATCG
123 GCGGGAGCCTC-GGCACCATCGGC-ACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGACACCATCG
** * * * * *
44223202 GC-ACCTAGGGGCTCGGAT-GTGCGGGAGGCTC-GGACACCATTGGCAAACTAAGCCCTTGGTCG
186 GCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCAGG-CACCATCGGCAACCTAGGCCCTTGGTCG
* * * * * * * * * *
44223264 CGTGAGAGCCTCGGGCACCATTGGTACCTCGGTGCTCGGATGTGCGAGAGCCTCAGG-CACCATT
249 TGCGAGAGCCTCGAGCACCATCGGCACCTAGGCGCTCGGATGTACGGGAGCCT-TGGACACCA-T
* * * * * * *
44223328 GGTAGAA--TAGGCCCTTCGTTGTGCGAGAGCCTCGGGCACCATCAGCACCTTGGTGGCTCGGAT
312 CG-ACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGG-CGCTCGGAT
*
44223391 GTACGG
375 GTGCGG
44223397 GAGCCTCGGACACCATCGGCAA
1 GAGCCTCGGACACCATCGGCAA
44223419 CCTTAGTGCT
Statistics
Matches: 2121, Mismatches: 462, Indels: 242
0.75 0.16 0.09
Matches are distributed among these distances:
381 8 0.00
382 210 0.10
383 1450 0.68
384 433 0.20
385 17 0.01
386 3 0.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.18
Consensus pattern (380 bp):
GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGGGGAAGCCTCGGGCACCATCGGCAC
CTAGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGCAACGTAGGCCCTTGGTCGTGCGGGAGC
CTCGGCACCATCGGCACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
CCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC
GAGCACCATCGGCACCTAGGCGCTCGGATGTACGGGAGCCTTGGACACCATCGACAACCTAGGCC
CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGG
Found at i:44232427 original size:43 final size:43
Alignment explanation
Indices: 44232366--44232452 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
44232356 AACACTACCG
* * * *
44232366 GCACCGTGGTGGCTCGGATGTACGGGAGCCTCGAGCGCCATCA
1 GCACCGTGGTGCCTCGGATGTACGGGACCCCCGAGCACCATCA
* *
44232409 GCACCTTGGTGCCTCGGATGTGCGGGACCCCCGAGCACCATCA
1 GCACCGTGGTGCCTCGGATGTACGGGACCCCCGAGCACCATCA
44232452 G
1 G
44232453 AAACTTTGGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.16
Consensus pattern (43 bp):
GCACCGTGGTGCCTCGGATGTACGGGACCCCCGAGCACCATCA
Found at i:44233217 original size:43 final size:42
Alignment explanation
Indices: 44232924--44233217 Score: 177
Period size: 43 Copynumber: 6.9 Consensus size: 42
44232914 AGCCTCTAAC
* * * * * *
44232924 ACCTTGGTGGCTCGGGTGTGCGGGAGCCTCGAACAGCATCGAA
1 ACCTTGGT-GCTTGGATGTGCGAGAGCCTCGAGCACCATCGCA
* * * * * *
44232967 ACCTTGGTGGCTCAGG-TGAGGGGGAGTCTCGAGTACCATCGGC-
1 ACCTTGGT-GCT-TGGATGTGCGAGAGCCTCGAGCACCATC-GCA
* * * *
44233010 CCCTTGGTGCTCGGATGAGCTG-GAGCCTCG-GCCACAATCAGCA
1 ACCTTGGTGCTTGGATGTGC-GAGAGCCTCGAG-CACCATC-GCA
* * **
44233053 ACCTTGGTGCTTGGATGTGCGAGAGGCTCGAGCACAATCGGT
1 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGCA
* * * *
44233095 ACCTTCGTGCTTGTATGTGTGAGAGCCTCGAGCACCATTGGC-
1 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCA-TCGCA
* * * * *
44233137 ATCTTGGTGGCTCGAATGTGCGGGAGCCTTTGA-CACCATCGACA
1 ACCTTGGT-GCTTGGATGTGCGAGAGCC-TCGAGCACCATCG-CA
*
44233181 ACCTTGGTGCTTGGATGTGCGAGAGCCTCAAGCACCA
1 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCA
44233218 AAGCAAAAGT
Statistics
Matches: 195, Mismatches: 42, Indels: 28
0.74 0.16 0.11
Matches are distributed among these distances:
41 3 0.02
42 65 0.33
43 113 0.58
44 14 0.07
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.22
Consensus pattern (42 bp):
ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGCA
Found at i:44238784 original size:85 final size:84
Alignment explanation
Indices: 44238641--44239783 Score: 796
Period size: 85 Copynumber: 13.4 Consensus size: 84
44238631 TCCAGCAGCA
* * * * * *
44238641 TAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGTACCTTGGTGCTAGGATGTGCGAGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGC
44238706 CTCGGACACCATCGGTAACC
66 CTCGGACACCATCGG-AACC
* * * * *
44238726 TAGGCCATTGGTTGTGCGAGAGCCTCGGGCACCATCGGCACCAAGGTGCTTGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGC
* *
44238791 CTCAGACACCATCGGGAAAC
66 CTCGGACACCATC-GGAACC
* * * * *
44238811 TAGGCCCTTTGTCGTGTGGGAGCCTCGGGCATCATCGGTAACCTAGGC-CTTTGG-TCGTGCGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCGC-TTGGAT-GTGCGGG
* *
44238874 AGCCTCGGGCACCATCGGCACC
63 AGCCTCGGACACCATCGGAACC
* * * * * * * * * * *
44238896 TGGGCGCTCAGAT-GTGCGGGAGCCTTGGACACCATTGGAAACCTAGGCCCTT-GATCGTACGAG
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCGCTTGGAT-GTGCGGG
* * *
44238959 AGCCACAGG-CACCATCAGCACC
63 AGCCTC-GGACACCATCGGAACC
* * * * *** * * * *
44238981 TAGGCGCTCAGAT-GTACGGGAGCCTCACACACCATCGGCAAACTA-ACCCGTGG-TCGTGCGGG
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGG
* *
44239043 AGCCTCGGGCACCATCGGCACC
63 AGCCTCGGACACCATCGGAACC
* * * * * * * * *
44239065 TGGGCGCTCGGAT-GTGTGGGAGCATCGGACACCATCGGCAAACTAGG-GCCTTGG-TCTTACGG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCG-CTTGGAT-GTGCGG
* ** *
44239127 GAGCCTTGGGTACCATCGGCCACC
62 GAGCCTCGGACACCATCGG-AACC
* * * * * * *
44239151 TAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTAGATGTGCGGGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGC
*
44239216 CTCAGACACCATCGGCAACC
66 CTCGGACACCATCGG-AACC
* *
44239236 TAGGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCGGTACCTAGGCG-TTCGGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTT-GGATGTGCGGGAG
44239300 CCTCGGACACCATCGGCAAACC
65 CCTCGGACACCATCGG--AACC
* * * * *
44239322 -AGGCCCGTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGCACTCGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGC
* *
44239386 GTCGGACACCATCGGTAAAC
66 CTCGGACACCATCGG-AACC
* * * * ** *
44239406 TAGGCCCTAGGTCTTGCGGGAGGCTCGGGCACCATCGACTACCTAAACCCTTGG-TCGTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGA
44239470 GCCTC-GAGCACCATC-GACACC
64 GCCTCGGA-CACCATCGGA-ACC
* ** * * * * *
44239491 TTGGTGCTTGGAT-GTGCGGGAACCTCAGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGG
* *
44239554 AGCCTCGGGCACCATCGGTAAAC
63 AGCCTCGGACACCATCGG-AACC
* * * * * * *
44239577 TAGGCCCTTGGACGTGTGGGAGCCTCGGGCACCATCGGCTCCTCGGTGCTTGGATGTACCGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGC
* *
44239642 CTCGGGCACCATCGGCAGA-A
66 CTCGGACACCATCGG-A-ACC
* * * * * * * * * *
44239662 TAGGTCGTTCGTCGTACGAGAGCCTC-GACAAGCATCGGGACCTAGGTGCTTGGATGTGCTGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGC-ACCATCGGCACCTAGGCGCTTGGATGTGCGGGAG
* *
44239726 CCTTGGACACCATCGGCAAAC
65 CCTCGGACACCATCGG-AACC
*
44239747 TAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
44239784 ATAACCTTAG
Statistics
Matches: 844, Mismatches: 178, Indels: 72
0.77 0.16 0.07
Matches are distributed among these distances:
83 3 0.00
84 73 0.09
85 625 0.74
86 142 0.17
87 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.18
Consensus pattern (84 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGC
CTCGGACACCATCGGAACC
Found at i:44239359 original size:128 final size:126
Alignment explanation
Indices: 44238648--44240300 Score: 724
Period size: 128 Copynumber: 13.0 Consensus size: 126
44238638 GCATAGGCCC
* * * * ** * *
44238648 TTGGTCGTGCAGGAGCCTCGGGCACCATCGG-TACCTTGGTGCTAGGAT-GTGCGAGAGCCTCGG
1 TTGGTCGTGCGGGAGCCTCGGACACCATCGGAAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* * * * *
44238711 ACACCATCGGTAACCTAGGCCATTGGTTGTGC-GAGAGCCTCGGGCACCATCGGCACCAAGGTG
65 GCACCATCGGCAACCTAGGCCCTTGG-TGTGCGGA-AGCCTCGGGCACCATCGGCACCTAGGCG
* * *
44238774 CTTGGAT-GTGCGGGAGCCTCAGACACCATCGGGAAA-CTAGGCCCTTTGTCGTGTGGGAGCCTC
1 -TTGG-TCGTGCGGGAGCCTCGGACACCATC-GGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTC
* * * *
44238837 GGGCATCATCGGTAACCTAGGCCTTTGGTCGTGC-GAGAGCCTCGGGCACCATCGGCACCTGGGC
63 GGGCACCATCGGCAACCTAGGCCCTTGGT-GTGCGGA-AGCCTCGGGCACCATCGGCACCTAGGC
44238901 G
126 G
* * * * * * * * *
44238902 CTCAGAT-GTGCGGGAGCCTTGGACACCATTGGAAACCTAGGCCCTTGATCGTACGAGAGCCACA
1 -T-TGGTCGTGCGGGAGCCTCGGACACCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * * * * *** * **
44238966 GGCACCATCAGC-ACCTAGGCGCTCAGATGTACGGGAGCCTCACACACCATCGGCAAACTAACCC
64 GGCACCATCGGCAACCTAGGCCCT-TGGTGTGCGGAAGCCTCGGGCACCATCGGC-ACCT-AGGC
44239030 G
126 G
* * * * * * *
44239031 -TGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTGGGCGCTCGGAT-GTGTGGGAGCATCGG
1 TTGGTCGTGCGGGAGCCTCGGACACCATCGGAAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
* * * * * * * * *
44239093 ACACCATCGGCAAACTAGGGCCTTGGTCTTACGGGAGCCTTGGGTACCATCGGCCACCTAGGCCC
65 GCACCATCGGCAACCTAGGCCCTTGGT-GTGCGGAAGCCTCGGGCACCATCGG-CACCTAGG-CG
* * * ** * * *
44239158 TTGGTCGTACGGGAGCCTC-GAGCACCATC-GACACCTTGGTGCTTAGAT-GTGCGGGAACCTCA
1 TTGGTCGTGCGGGAGCCTCGGA-CACCATCGGAAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCG
* *
44239220 GACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCGGTACCTAGGCG
64 GGCACCATCGGCAACCTAGGCCCTTGGT-GTGCGGAAGCCTCGGGCACCATCGGCACCTAGGCG
* *
44239284 TTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACC-AGGCCCGTGGTCGTGCGAGAGCCTC
1 TT-GG-TCGTGCGGGAGCCTCGGACACCATCGG-AAACCTAGGCCCTTGGTCGTGCGGGAGCCTC
* * * * * * * *
44239347 GGGCACCATCGGC-ACCTGGGCACTCGGATGTGCGGGAGCGTCGGACACCATCGGTAAACTAGGC
63 GGGCACCATCGGCAACCTAGGCCCTTGG-TGTGCGGAAGCCTCGGGCACCATCGG-CACCTAGG-
*
44239411 CC
125 CG
* * * * * ** *
44239413 TAGGTCTTGCGGGAGGCTCGGGCACCATC-GACTACCTAAACCCTTGGTCGTGCGGGAGCCTCGA
1 TTGGTCGTGCGGGAGCCTCGGACACCATCGGA-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * ** * *
44239477 GCACCATCGAC-ACCTTGGTGCTTGGATGTGCGGGAA-CCTCAGACACCATCGGCAACCTAGGCC
65 GCACCATCGGCAACCTAGGCCCTTGG-TGTGC-GGAAGCCTCGGGCACCATCGGC-ACCTAGG-C
*
44239540 C
126 G
* * * *
44239541 TTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAAA-CTAGGCCCTTGGACGTGTGGGAGCCTCGG
1 TTGGTCGTGCGGGAGCCTCGGACACCATCGG-AAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * ** * **
44239605 GCACCATCGGC-TCCTCGGTGCTTGGATGTACCGG-AGCCTCGGGCACCATCGGCAGAATAGGTC
65 GCACCATCGGCAACCTAGGCCCTTGG-TGT-GCGGAAGCCTCGGGCACCATCGGCA-CCTAGG-C
44239668 G
126 G
* * * * * ** * *
44239669 TTCGTCGTACGAGAGCCTC-GACAAGCATCGG-GACCTAGGTGCTTGGAT-GTGCTGGAGCCTTG
1 TTGGTCGTGCGGGAGCCTCGGAC-ACCATCGGAAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
* * * * ** *
44239731 GACACCATCGGCAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGATAACCTTAGCC
64 GGCACCATCGGCAACCTAGGCCCTTGGT-GTGCGGAAGCCTCGGGCACCATCG-GCACC-TAGGC
*
44239796 C
126 G
* * ** * * * * * * ** *
44239797 TTGGACGTGCGAGAGTTTAGGGCACCATCGG-TACCTGGGCGCTCGAGT-GTGCGGGAGTGTCAG
1 TTGGTCGTGCGGGAGCCTCGGACACCATCGGAAACCTAGGCCCTTG-GTCGTGCGGGAGCCTCGG
* * * * * * * *
44239860 ACACCATCGGCAAACTAGGCCCTTGATCG-GTCGGGAGCCTCGGGCAACATCGGCCCCTCGGTG
65 GCACCATCGGCAACCTAGGCCCTTGGT-GTG-CGGAAGCCTCGGGCACCATCGGCACCTAGGCG
* * *** * * * * *
44239923 CTATGAT-GTGCGGGAGCCTCAGACAATGTCCGCATCGTAGGCCCTTGGTCGTGCGGGAGTCTCG
1 -T-TGGTCGTGCGGGAGCCTCGGACACCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * ** * * * *
44239987 AGCACCATCGAC-ACCTTGGTGCTCGGATGTCCGGGAA-CCTCGGACACCATCGGGAACCTAGGC
64 GGCACCATCGGCAACCTAGGCCCTTGG-TGTGC-GGAAGCCTCGGGCACCATC-GGCACCTAGG-
*
44240050 CC
125 CG
* * * * * ** * * * *
44240052 TCGGTCGTTCGAGG-GCCTCGGGCACCATCGG-CACCAAGGGGCTCGAAT-GTACGGGAGGCTCG
1 TTGGTCGTGCG-GGAGCCTCGGACACCATCGGAAACCTAGGCCCTTG-GTCGTGCGGGAGCCTCG
* * * * * * * * * *
44240114 GACACGATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGACATCTCGGTG
64 GGCACCATCGGCAACCTAGGCCCTTGGT-GTGCGGAAGCCTCGGGCACCATCGGCACCTAGGCG
* * * ** **
44240178 CTCAGAT-GTGCGGGAGCCTCTGG-CACCTTCGGCAGAA--TAGGCCCTTCATCGTGCGACAGCC
1 -T-TGGTCGTGCGGGAGCCTC-GGACACCATCGG-A-AACCTAGGCCCTTGGTCGTGCGGGAGCC
* * * *
44240239 TCGGACACTATCGGCAACCTTAGTG--CTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCT
61 TCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TGTGCGGAAGCCTCGGGCACCATCGGCACCT
44240301 TGGTGCCTGG
Statistics
Matches: 1143, Mismatches: 306, Indels: 153
0.71 0.19 0.10
Matches are distributed among these distances:
126 42 0.04
127 323 0.28
128 746 0.65
129 29 0.03
130 3 0.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (126 bp):
TTGGTCGTGCGGGAGCCTCGGACACCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
CACCATCGGCAACCTAGGCCCTTGGTGTGCGGAAGCCTCGGGCACCATCGGCACCTAGGCG
Found at i:44239905 original size:85 final size:85
Alignment explanation
Indices: 44238828--44240297 Score: 610
Period size: 85 Copynumber: 17.3 Consensus size: 85
44238818 TTTGTCGTGT
* * * * * * *
44238828 GGGAGCCTCGGGCATCATCGGTAACCTAGGCCTTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
*
44238893 ACCTGGGCGCTC-AGATGTGC
66 ACCTGGGTGCTCGAG-TGTGC
** * * * * * * *
44238913 GGGAGCCTTGGACACCATTGG-AAACCTAGGCCCTTGATCGTACGAGAGCCACAGGCACCATCAG
1 GGGAGCCTCAGACACCATCGGCAAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* * *
44238977 CACCTAGGCGCTC-AGATGTAC
65 CACCTGGGTGCTCGAG-TGTGC
* * *
44238998 GGGAGCCTCACACACCATCGGCAAACTA-ACCCGTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* *
44239062 ACCTGGGCGCTCG-GATGTGT
66 ACCTGGGTGCTCGAG-TGTGC
* * * * * * *
44239082 GGGAGCATCGGACACCATCGGCAAACTAGGGCCTTGGTCTTACGGGAGCCTTGGGTACCATCGGC
1 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-
* ** * *
44239147 CACCTAGGCCCTTG-GTCGTAC
65 CACCTGGGTGCTCGAGT-GTGC
* * * ** * * * *
44239168 GGGAGCCTC-GAGCACCATCGAC-ACCTTGGTGCTTAGAT-GTGCGGGAACCTCAGACACCATCG
1 GGGAGCCTCAGA-CACCATCGGCAAACTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCG
* ** *
44239230 GCAACCTAGGCCCTTG-GTCGTGC
64 GC-ACCTGGGTGCTCGAGT-GTGC
* * * * * * *
44239253 GGAAGCCTCGGGCACCATCGG-TACCTAGG-CGTTCGGAT-GTGCGGGAGCCTCGGACACCATCG
1 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTT-GG-TCGTGCGGGAGCCTCGGGCACCATCG
* * *
44239315 GCAAACC--AG-GCCCGTGGTCGTGC
64 GC--ACCTGGGTGCTCG-AGT-GTGC
* * * * * * * * *
44239338 GAGAGCCTCGGGCACCATCGGC-ACCTGGGCACTCGGAT-GTGCGGGAGCGTCGGACACCATCGG
1 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
* * * ** * *
44239401 TAAACTAGGCCCTAG-GTCTTGC
65 -CACCTGGGTGCTCGAGT-GTGC
* * * * * * ** * *
44239423 GGGAGGCTCGGGCACCATCGACTACCTAAACCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC
1 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* *
44239488 ACCTTGGTGCTTG-GATGTGC
66 ACCTGGGTGCTCGAG-TGTGC
* * *
44239508 GGGAACCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGT
1 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-
* * * ** *
44239573 AAACTAGGCCCTTGGACGTGT--
65 CACCTGGGTGC-TCGA-GTGTGC
* * ** * ** * *
44239594 GGGAGCCTCGGGCACCATCGGC-TCCTCGGTGCTTGGAT-GTACCGGAGCCTCGGGCACCATCGG
1 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
** * * *
44239657 CAGAATAGGTCGTTC--GTCGTAC
65 CA-CCTGGGT-GCTCGAGT-GTGC
* * * * ** * * *
44239679 GAGAGCCTC-GACAAGCATCGG-GACCTAGGTGCTTGGAT-GTGCTGGAGCCTTGGACACCATCG
1 GGGAGCCTCAGAC-ACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCG
* * ** * *
44239741 GCAAACTAGGCCCTTG-GTCGTAC
64 GC-ACCTGGGTGCTCGAGT-GTGC
* * ** * * * ** *
44239764 GGGAGCCTCGGGCACCATCGATAACCTTA-GCCCTTGGACGTGCGAGAGTTTAGGGCACCATCGG
1 GGGAGCCTCAGACACCATCGGCAAAC-TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* *
44239828 TACCTGGGCGCTCGAGTGTGC
65 CACCTGGGTGCTCGAGTGTGC
** * *
44239849 GGGAGTGTCAGACACCATCGGCAAACTAGGCCCTTGATCG-GTCGGGAGCCTCGGGCAACATCGG
1 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTG-CGGGAGCCTCGGGCACCATCGG
* * *
44239913 CCCCTCGGTGCTATGA-TGTGC
65 CACCTGGGTGCT-CGAGTGTGC
*** * * * * *
44239934 GGGAGCCTCAGACAATGTCCGC-ATCGTAGGCCCTTGGTCGTGCGGGAGTCTCGAGCACCATCGA
1 GGGAGCCTCAGACACCATCGGCAAAC-TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* *
44239998 CACCTTGGTGCTCG-GATGTCC
65 CACCTGGGTGCTCGAG-TGTGC
* * * * * *
44240019 GGGAACCTCGGACACCATCGGGAACCTAGGCCCTCGGTCGTTCGAGG-GCCTCGGGCACCATCGG
1 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCG-GGAGCCTCGGGCACCATCGG
* * *
44240083 CACCAAGGG-GCTCGAATGTAC
65 CACC-TGGGTGCTCGAGTGTGC
* * * * * *
44240104 GGGAGGCTCGGACACGATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGAC
1 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* *
44240169 ATCTCGGTGCTC-AGATGTGC
66 ACCTGGGTGCTCGAG-TGTGC
* * * ** ** * *
44240189 GGGAGCCTCTGGCACCTTCGGCAGAA-TAGGCCCTTCATCGTGCGACAGCCTCGGACACTATCGG
1 GGGAGCCTCAGACACCATCGGCA-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
** *
44240253 CAACCTTAGTGCTTG-GATGTGC
65 C-ACCTGGGTGCTCGAG-TGTGC
44240275 GGGAGCCTC-GAGCACCATCGGCA
1 GGGAGCCTCAGA-CACCATCGGCA
44240298 CCTTGGTGCC
Statistics
Matches: 1066, Mismatches: 258, Indels: 121
0.74 0.18 0.08
Matches are distributed among these distances:
82 2 0.00
83 4 0.00
84 93 0.09
85 779 0.73
86 178 0.17
87 6 0.01
88 3 0.00
89 1 0.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (85 bp):
GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
ACCTGGGTGCTCGAGTGTGC
Found at i:44239933 original size:213 final size:213
Alignment explanation
Indices: 44238696--44239997 Score: 1071
Period size: 213 Copynumber: 6.1 Consensus size: 213
44238686 GTGCTAGGAT
* * * * ** *
44238696 GTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCATTGGTTGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGACGTGCGGGAGCCTCGGGCACCAT
* * * * * *
44238761 CGGCACCAAGGTGCTTG-GATGTGCGGGAGCCTCAGACACCATCGGGAAACTAGGCCCTTTGTCG
66 CGGTACCTAGGCGCTCGAGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCG
* * * * * * *
44238825 TGTGGGAGCCTCGGGCATCATCGGTAACCTAGG-CCTTTGGTCGTGCGAGAGCCTCGGGCACCAT
131 TGCGGGAGCCTCGGGCACCATCGG-CACCTAGGTGC-TTGAT-GTGCGGGAGCCTCGGACACCAT
* * * * *
44238889 CGGC-ACCTGGGCGCTCAGAT-
193 CGGCAAACTAGGCCCT-TGGTC
* * * * * * *
44238909 GTGCGGGAGCCTTGGACACCATTGGA-AACCTAGGCCCTT-GATCGTACGAGAGCCACAGGCACC
1 GTGCGGGAGCCTCGGGCACCA-TCGATAACCTAGGCCCTTGGA-CGTGCGGGAGCCTCGGGCACC
* * * * * *
44238972 ATCAGCACCTAGGCGCTC-AGATGTACGGGAGCCTCACACACCATCGGCAAACTA-ACCCGTGGT
64 ATCGGTACCTAGGCGCTCGAGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGT
* * * * *
44239035 CGTGCGGGAGCCTCGGGCACCATCGGCACCTGGGCGCTCGGATGTGTGGGAGCATCGGACACCAT
129 CGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGATGTGCGGGAGCCTCGGACACCAT
*
44239100 CGGCAAACTAGGGCCTTGGTC
193 CGGCAAACTAGGCCCTTGGTC
* * * * *** * * *
44239121 TTACGGGAGCCTTGGGTACCATCGGCCACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGACGTGCGGGAGCCTCGGGCACCAT
** * * * * *
44239186 CGACACCTTGGTGCT-TAGATGTGCGGGAACCTCAGACACCATCGGCAACCTAGGCCCTTGGTCG
66 CGGTACCTAGGCGCTCGAGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCG
* * *
44239250 TGCGGAAGCCTCGGGCACCATCGGTACCTAGGCG-TTCGGATGTGCGGGAGCCTCGGACACCATC
131 TGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTT--GATGTGCGGGAGCCTCGGACACCATC
* *
44239314 GGCAAACCAGGCCCGTGGTC
194 GGCAAACTAGGCCCTTGGTC
* ** * * * * * *
44239334 GTGCGAGAGCCTCGGGCACCATCG-GCACCTGGGCACTCGGATGTGCGGGAGCGTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGACGTGCGGGAGCCTCGGGCACCAT
* * * * * * * * * * **
44239398 CGGTAAACTAGGC-C-CTAGGTCTTGCGGGAGGCTCGGGCACCATCGACTACCTAAACCCTTGGT
66 CGGT-ACCTAGGCGCTCGAGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGT
* * * * *
44239461 CGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCAGACACCAT
129 CGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTT-GATGTGCGGGAGCCTCGGACACCAT
*
44239526 CGGCAACCTAGGCCCTTGGTC
193 CGGCAAACTAGGCCCTTGGTC
* * * *
44239547 GTGCGAGAGCCTCGGGCACCATCGGTAAACTAGGCCCTTGGACGTGTGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGACGTGCGGGAGCCTCGGGCACCAT
* * * * * * * * * *
44239612 CGGCT-CCTCGGTGCTTG-GATGTACCGGAGCCTCGGGCACCATCGGCAGAA-TAGGTCGTTCGT
66 CGG-TACCTAGGCGCTCGAGATGTGCGGGAGCCTCAGACACCATCGGCA-AACTAGGCCCTTGGT
* * * * * * *
44239674 CGTACGAGAGCCTC-GACAAGCATCGGGACCTAGGTGCTTGGATGTGCTGGAGCCTTGGACACCA
129 CGTGCGGGAGCCTCGGGC-ACCATCGGCACCTAGGTGCTT-GATGTGCGGGAGCCTCGGACACCA
44239738 TCGGCAAACTAGGCCCTTGGTC
192 TCGGCAAACTAGGCCCTTGGTC
* * ** *
44239760 GTACGGGAGCCTCGGGCACCATCGATAACCTTA-GCCCTTGGACGTGCGAGAGTTTAGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGATAACC-TAGGCCCTTGGACGTGCGGGAGCCTCGGGCACCA
* ** *
44239824 TCGGTACCTGGGCGCTCGAG-TGTGCGGGAGTGTCAGACACCATCGGCAAACTAGGCCCTTGATC
65 TCGGTACCTAGGCGCTCGAGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTC
* * * * ***
44239888 G-GTCGGGAGCCTCGGGCAACATCGGCCCCTCGGTGCTATGATGTGCGGGAGCCTCAGACAATGT
130 GTG-CGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGATGTGCGGGAGCCTCGGACACCAT
* *
44239952 CCGC-ATCGTAGGCCCTTGGTC
193 CGGCAAAC-TAGGCCCTTGGTC
* *
44239973 GTGCGGGAGTCTCGAGCACCATCGA
1 GTGCGGGAGCCTCGGGCACCATCGA
44239998 CACCTTGGTG
Statistics
Matches: 868, Mismatches: 190, Indels: 62
0.77 0.17 0.06
Matches are distributed among these distances:
211 33 0.04
212 176 0.20
213 611 0.70
214 47 0.05
215 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.18
Consensus pattern (213 bp):
GTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGACGTGCGGGAGCCTCGGGCACCAT
CGGTACCTAGGCGCTCGAGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCG
TGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGATGTGCGGGAGCCTCGGACACCATCGG
CAAACTAGGCCCTTGGTC
Found at i:44240319 original size:43 final size:43
Alignment explanation
Indices: 44240235--44240320 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
44240225 ATCGTGCGAC
* *
44240235 AGCCTCGGACACTATCGGCAACCTTAGTGCTTGGATGTGCGGG
1 AGCCTCGGACACCATCGGCAACCTTAGTGCTGGGATGTGCGGG
*
44240278 AGCCTC-GAGCACCATCGGC-ACCTTGGTGCCTGGGATGTGCGGG
1 AGCCTCGGA-CACCATCGGCAACCTTAGTG-CTGGGATGTGCGGG
44240321 CTAAAGAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 10 0.26
43 28 0.74
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.21
Consensus pattern (43 bp):
AGCCTCGGACACCATCGGCAACCTTAGTGCTGGGATGTGCGGG
Found at i:44244301 original size:43 final size:42
Alignment explanation
Indices: 44244233--44244525 Score: 338
Period size: 43 Copynumber: 6.9 Consensus size: 42
44244223 AGCCTCCAGC
* *
44244233 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGGA
1 ACCTTGGT-GCTCGGATGTGCGAGAGCCTCGAGCACCATCGGA
* * * *
44244276 ACCTTGGTGGCTCAGATGAGGGGGAGCCTCGAGCACCATC-GA
1 ACCTTGGT-GCTCGGATGTGCGAGAGCCTCGAGCACCATCGGA
*
44244318 CACCTTGGTGCTCGGATGTGCTAGAGCCTCG-GCCACCATCGGTA
1 -ACCTTGGTGCTCGGATGTGCGAGAGCCTCGAG-CACCATCGG-A
* * * *
44244362 ACCTTGGTGCTTGGATGTGCGAGAGGCTCGAGCACAATCGGT
1 ACCTTGGTGCTCGGATGTGCGAGAGCCTCGAGCACCATCGGA
* * *
44244404 ACCTTGGTGCTTGTATGTGCGAGAGCCTCGAGCACCATCGACA
1 ACCTTGGTGCTCGGATGTGCGAGAGCCTCGAGCACCATCG-GA
* * *
44244447 ACCTTGGTGCTTGGATGTGCGAAAGCCTCGAGCACCATCGGC
1 ACCTTGGTGCTCGGATGTGCGAGAGCCTCGAGCACCATCGGA
* * *
44244489 ACCTTGGTGCTTGGATGTGCGGGAGCCTCAAGCACCA
1 ACCTTGGTGCTCGGATGTGCGAGAGCCTCGAGCACCA
44244526 AAGCAAAAGT
Statistics
Matches: 218, Mismatches: 26, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
41 1 0.00
42 97 0.44
43 118 0.54
44 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.21
Consensus pattern (42 bp):
ACCTTGGTGCTCGGATGTGCGAGAGCCTCGAGCACCATCGGA
Found at i:44244392 original size:85 final size:83
Alignment explanation
Indices: 44244231--44244517 Score: 349
Period size: 85 Copynumber: 3.4 Consensus size: 83
44244221 AGAGCCTCCA
* * ** *
44244231 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGGAACCTTGGTGGCTCAGATGAG
1 GCACCTTGGT-GCTCGGATGTGCGAGAGCCTCG-GCACCATCGGAACCTTGGT-GCTTGGATGTG
* *
44244296 GGGGAGCCTCGAGCACCATCG
63 CGAGAGCCTCGAGCACCATCG
* *
44244317 ACACCTTGGTGCTCGGATGTGCTAGAGCCTCGGCCACCATCGGTAACCTTGGTGCTTGGATGTGC
1 GCACCTTGGTGCTCGGATGTGCGAGAGCCTCGG-CACCATCGG-AACCTTGGTGCTTGGATGTGC
* *
44244382 GAGAGGCTCGAGCACAATCG
64 GAGAGCCTCGAGCACCATCG
* * * *
44244402 GTACCTTGGTGCTTGTATGTGCGAGAGCCTCGAGCACCATCGACAACCTTGGTGCTTGGATGTGC
1 GCACCTTGGTGCTCGGATGTGCGAGAGCCTCG-GCACCATCG-GAACCTTGGTGCTTGGATGTGC
*
44244467 GAAAGCCTCGAGCACCATCG
64 GAGAGCCTCGAGCACCATCG
* *
44244487 GCACCTTGGTGCTTGGATGTGCGGGAGCCTC
1 GCACCTTGGTGCTCGGATGTGCGAGAGCCTC
44244518 AAGCACCAAA
Statistics
Matches: 174, Mismatches: 23, Indels: 9
0.84 0.11 0.04
Matches are distributed among these distances:
85 155 0.89
86 19 0.11
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.22
Consensus pattern (83 bp):
GCACCTTGGTGCTCGGATGTGCGAGAGCCTCGGCACCATCGGAACCTTGGTGCTTGGATGTGCGA
GAGCCTCGAGCACCATCG
Found at i:44244941 original size:85 final size:85
Alignment explanation
Indices: 44244791--44245591 Score: 710
Period size: 85 Copynumber: 9.4 Consensus size: 85
44244781 TCCGGTAGCA
* * ** * * *
44244791 TAGGCCTTTGGTCGTGCGGGAGCCTTAGGCACCATC-GACACCTTGGTG-CTAGGATGTCCCGGA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAG-CACCTAGGTGCCT-GGATGTGCGGGA
*
44244854 GCCTCGGACACCATCAGCAACC
64 GCCTCGGACACCATCGGCAACC
* * * * * *
44244876 TAAGCCGTTGGTCATGCGAGAACCTTGGGCACCATCAGCACCTAGGTGCCTGGATGTGTGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAGGTGCCTGGATGTGCGGGAGC
* *
44244941 CTCGGCCACCATC-GTAACC
66 CTCGGACACCATCGGCAACC
* * * *
44244960 TAGGCTCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTA-G-GCACTCGGAGGTCCGGGA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAGGTGC-CT-GGATGTGCGGGA
*
44245023 GCCTCGAACACCATCGGCAACC
64 GCCTCGGACACCATCGGCAACC
* * * * * *
44245045 TAGGCCCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCACCTACGCG-CTCAGATGTACGGGAG
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAGGTGCCT-GGATGTGCGGGAG
* * *
44245109 CCTCAGACACCATCGGTAAAC
65 CCTCGGACACCATCGGCAACC
* * ** * * *
44245130 TAGGGCCGTGGTCGTGCGAGAGCCTCGGGCATGATCAGCAAACTAGG-CCCTTGG-TCTTGCGGG
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGC-ACCTAGGTGCC-TGGAT-GTGCGGG
* *
44245193 AGCCTCGGACACCATCGACAAAC
63 AGCCTCGGACACCATCGGCAACC
* * * * * *
44245216 TAGGCCCTTGGTCGTGCGGGAGCCTTGAGCACCATC-GACACCTTGGTGCTTGGATGTGCGGGAA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAG-CACCTAGGTGCCTGGATGTGCGGGAG
44245280 CCTCGGACACCATCGGCAACC
65 CCTCGGACACCATCGGCAACC
* * * *
44245301 TAGGCCCTTGGTCGTGCGAGAGCCACGGGCACCATCGGCACCTAGGCG-CTCGGATGTGCGGGCG
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAGGTGCCT-GGATGTGCGGGAG
** * * * *
44245365 CCTCTTATAACATCGGAAAAC
65 CCTCGGACACCATCGGCAACC
* ** * * * * *
44245386 TGGGCCCTTGGTCGTAAGGGAGCCTCGGGCACCATCAGCAGCTCGGTGCTTGGATGTCCGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAGGTGCCTGGATGTGCGGGAGC
*
44245451 CTCAGG-CACCATCGGCAGA-A
66 CTC-GGACACCATCGGCA-ACC
* * *
44245471 TAGGCCCTTTGTCGTGCGAGAGCCTCGGCCACCATCAAG-ACCTAGGTGCTTGGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC-AGCACCTAGGTGCCTGGATGTGCGGGAG
** *
44245535 CCTCGGACACCATCGAAAAAC
65 CCTCGGACACCATCGGCAACC
** * * * *
44245556 TAGGCCCTTATTCCTTCGGGAGCCTCGGGCATCATC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC
44245592 GGTAGCCTAG
Statistics
Matches: 578, Mismatches: 116, Indels: 44
0.78 0.16 0.06
Matches are distributed among these distances:
82 2 0.00
83 3 0.01
84 68 0.12
85 430 0.74
86 73 0.13
87 2 0.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAGGTGCCTGGATGTGCGGGAGC
CTCGGACACCATCGGCAACC
Found at i:44244952 original size:42 final size:41
Alignment explanation
Indices: 44244890--44245680 Score: 273
Period size: 43 Copynumber: 18.6 Consensus size: 41
44244880 CCGTTGGTCA
* * *
44244890 TGCGAGAACCTTGGGCACCATCAGCACCTAGGTGCCTGGATG
1 TGCGAGAGCCTCGGGCACCATCGGCACCTAGG-GCCTGGATG
* * * **
44244932 TGTGGGAGCCTCGGCCACCATCGTAACCTA-GGCTCTTGG-TCG
1 TGCGAGAGCCTCGGGCACCATCGGCACCTAGGGC-C-TGGAT-G
*
44244974 TGCGAGAGCCTCGGGCACCATCGGCACCTA-GGCACTCGGAGG
1 TGCGAGAGCCTCGGGCACCATCGGCACCTAGGGC-CT-GGATG
* * ** * *
44245016 TCCGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTTG
1 TGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGGCC-TGGATG
* *
44245059 TGCGAGAGCCTCGGGCACCATCGGCACCTA-CGCGCTCAGATG
1 TGCGAGAGCCTCGGGCACCATCGGCACCTAGGGC-CT-GGATG
* * * * * *
44245101 TACGGGAGCCTCAGACACCATCGGTAAACTAGGGCCGTGG-TCG
1 TGCGAGAGCCTCGGGCACCATCGG-CACCTAGGGCC-TGGAT-G
** * * * *
44245144 TGCGAGAGCCTCGGGCATGATCAGCAAACTAGGCCCTTGG-TCT
1 TGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGGCC-TGGAT-G
* * * * *
44245187 TGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGG-TCG
1 TGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGGCC-TGGAT-G
* * * * * *
44245230 TGCGGGAGCCTTGAGCACCATCGACACCTTGGTGCTTGGATG
1 TGCGAGAGCCTCGGGCACCATCGGCACCTAGG-GCCTGGATG
* * * *
44245272 TGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCG
1 TGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGGCC-TGGAT-G
*
44245315 TGCGAGAGCCACGGGCACCATCGGCACCTA-GGCGCTCGGATG
1 TGCGAGAGCCTCGGGCACCATCGGCACCTAGGGC-CT-GGATG
* * **** * * *
44245357 TGCGGGCGCCTCTTATAACATCGGAAAACT-GGGCCCTTGG-TCG
1 TGCGAGAGCCTCGGGCACCATCGG-CACCTAGGG-CC-TGGAT-G
** * * * * *
44245400 TAAGGGAGCCTCGGGCACCATCAGCAGCTCGGTGCTTGGATG
1 TGCGAGAGCCTCGGGCACCATCGGCACCTAGG-GCCTGGATG
* * * ** * *
44245442 TCCGGGAGCCTCAGGCACCATCGGCAGAATAGGCCCTTTG-TCG
1 TGCGAGAGCCTCGGGCACCATCGGCA-CCTAGGGCC-TGGAT-G
* * *
44245485 TGCGAGAGCCTCGGCCACCATCAAG-ACCTAGGTGCTTGGATG
1 TGCGAGAGCCTCGGGCACCATC-GGCACCTAGG-GCCTGGATG
* * ** * * * *
44245527 TGCGGGAGCCTCGGACACCATCGAAAAACTAGGCCCT-TATTCC
1 TGCGAGAGCCTCGGGCACCATCG-GCACCTAGGGCCTGGA-T-G
* * * * * *
44245570 TTCGGGAGCCTCGGGCATCATCGGTAGCCTAGGCCCTTGG-TCT
1 TGCGAGAGCCTCGGGCACCATCGGCA-CCTAGGGCC-TGGAT-G
**
44245613 TGCGAGAGTTTCGGGCACCATCGGCACCT-GGGCGCTCGGATG
1 TGCGAGAGCCTCGGGCACCATCGGCACCTAGGGC-CT-GGATG
* * *
44245655 TGCGGGAGCGTCGGACACCATCGGCA
1 TGCGAGAGCCTCGGGCACCATCGGCA
44245681 AACTAAGCCC
Statistics
Matches: 555, Mismatches: 147, Indels: 94
0.70 0.18 0.12
Matches are distributed among these distances:
40 2 0.00
41 14 0.03
42 256 0.46
43 272 0.49
44 11 0.02
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (41 bp):
TGCGAGAGCCTCGGGCACCATCGGCACCTAGGGCCTGGATG
Found at i:44245672 original size:128 final size:128
Alignment explanation
Indices: 44245444--44245692 Score: 320
Period size: 128 Copynumber: 1.9 Consensus size: 128
44245434 CTTGGATGTC
*
44245444 CGGGAGCCTCAGGCACCATCGGCAGAATAGGCCCTTTGTCGTGCGAGAGCCTCGGCCACCATCAA
1 CGGGAGCCTCAGGCACCATCGGCAGAATAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCAA
* * *
44245509 GACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGAAAAACTAGGCCCTTATTCCTT
66 GACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGAAAAACTAAGCCCTTATTCCTT
* * * ** * ** * *
44245572 CGGGAGCCTCGGGCATCATCGGTAGCCTAGGCCCTTGGTCTTGCGAGAGTTTCGGGCACCATC-G
1 CGGGAGCCTCAGGCACCATCGGCAGAATAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCAA
* * **
44245636 GCACCTGGGCGCTCGGATGTGCGGGAGCGTCGGACACCATCGGCAAACTAAGCCCTT
66 G-ACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGAAAAACTAAGCCCTT
44245693 GCTCGTATGG
Statistics
Matches: 102, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
127 1 0.01
128 101 0.99
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (128 bp):
CGGGAGCCTCAGGCACCATCGGCAGAATAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCAA
GACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGAAAAACTAAGCCCTTATTCCTT
Found at i:44245691 original size:85 final size:85
Alignment explanation
Indices: 44245572--44246093 Score: 433
Period size: 85 Copynumber: 6.1 Consensus size: 85
44245562 CTTATTCCTT
* * * ** * **
44245572 CGGGAGCCTCGGGCATCATCGGTAGCCTAGGCCCTTGGTCTTGCGAGAGTTTCGGGCACCATCGG
1 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
*
44245637 CACCTGGGCGCTCGGATGTG
66 CACCTGGGTGCTCGGATGTG
* * * ** * *
44245657 CGGGAGCGTCGGACACCATCGGCAAACTAAGCCCTTGCTCGTATGGGCA-CCTCGGGCAACATCG
1 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAG-AGCCTCGGGCACCATCG
* * **
44245721 GCCCCTCGGTGCTATGATGTG
65 GCACCTGGGTGCTCGGATGTG
* *** * ** *
44245742 TGGGAGCCTCGGACAATGTCAGCATCCTAGGCCCTTGGTCGTGC-AG-GACTCTCGAGCACCATC
1 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAG-C-CTCGGGCACCATC
* * * *
44245805 GACACCTTGGTGCTTGGATGTA
64 GGCACCTGGGTGCTCGGATGTG
* * * * **
44245827 CGGGAACCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACTGTCGG
1 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
*
44245892 CACCAAGGG-GCTCGGATGTG
66 CACC-TGGGTGCTCGGATGTG
** * * * * * *
44245912 CGGGAGGGTCAGACACCATCGGCAAACTAAGCCCTTGGTCGCGCGGGAGCCTCAGGCACCATCGT
1 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
*
44245977 CACCTCGGTGCTCGGATGTG
66 CACCTGGGTGCTCGGATGTG
* * * * * *
44245997 CGGGAGCCTTGGGCACCATCAGCATAA-TAGGCCCTTCGTCGTGCAAAAGCCTCGGGCACCATCG
1 CGGGAGCCTCGGACACCATCGGCA-AACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* **
44246061 ACACCTTTGTGGCTCGGATGTG
65 GCACCTGGGT-GCTCGGATGTG
*
44246083 TGGGAGCCTCG
1 CGGGAGCCTCG
44246094 AGTAGCATGG
Statistics
Matches: 335, Mismatches: 92, Indels: 19
0.75 0.21 0.04
Matches are distributed among these distances:
84 4 0.01
85 302 0.90
86 28 0.08
87 1 0.00
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (85 bp):
CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
CACCTGGGTGCTCGGATGTG
Found at i:44245710 original size:128 final size:128
Alignment explanation
Indices: 44245444--44245721 Score: 310
Period size: 128 Copynumber: 2.2 Consensus size: 128
44245434 CTTGGATGTC
* * * ** *
44245444 CGGGAGCCTCAGGCACCATCGGCAGAATAGGCCCTTTGTCGTGCGAGAGCCTCGGCCACCATCAA
1 CGGGAGCCTCGGGCAACATCGGTAGCCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCAA
* * * *
44245509 GACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGAAAAACTAGGCCCTTATTCCTT
66 GACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGAAAAACTAAGCCCTTACTCCTT
* * ** * *
44245572 CGGGAGCCTCGGGCATCATCGGTAGCCTAGGCCCTTGGTCTTGCGAGAGTTTCGGGCACCATC-G
1 CGGGAGCCTCGGGCAACATCGGTAGCCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCAA
* * ** * *
44245636 GCACCTGGGCGCTCGGATGTGCGGGAGCGTCGGACACCATCGGCAAACTAAGCCCTTGCTCGTAT
66 G-ACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGAAAAACTAAGCCCTTACTCCT-T
44245701 -GGGCA-CCTCGGGCAACATCGG
1 CGGG-AGCCTCGGGCAACATCGG
44245722 CCCCTCGGTG
Statistics
Matches: 125, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
127 1 0.01
128 122 0.98
129 2 0.02
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (128 bp):
CGGGAGCCTCGGGCAACATCGGTAGCCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCAA
GACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGAAAAACTAAGCCCTTACTCCTT
Found at i:44245839 original size:298 final size:298
Alignment explanation
Indices: 44245274--44245862 Score: 708
Period size: 298 Copynumber: 2.0 Consensus size: 298
44245264 CTTGGATGTG
44245274 CGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCACGGGCACCATCGG
1 CGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCACGGGCACCATCGG
* ** * ** *
44245339 CACCTAGGCGCTCGGATGTGCGGGCGCCTCTTATAACATCGGAAAACTGGGCCCTTGGTCGTAAG
66 CACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACAACATCGGAAAACTAAGCCCTTGCTCGTAAG
* * *
44245404 GGAGCCTCGGGCACCATCAGCAGCTCGGTGCTTGGATGTCCGGGAGCCTCAGGCACCATCGGCAG
131 GGAGCCTCGGGCAACATCAGCACCTCGGTGCTTGGATGTCCGGGAGCCTCAGGCACAATCGGCAG
* * *
44245469 AATAGGCCCTTTGTCGTGCGAGAGCCTCGGCCACCATCAAGACCTAGGTGCTTGGATGTGCGGGA
196 AATAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCAACACCTAGGTGCTTGGATGTACGGGA
*
44245534 GCCTCGGACACCATCGAAAAACTAGGCCCTTATTCCTT
261 ACCTCGGACACCATCGAAAAACTAGGCCCTTATTCCTT
* * * * * * ***
44245572 CGGGAGCCTCGGGCATCATCGGTAGCCTAGGCCCTTGGTCTTGCGAGAGTTTCGGGCACCATCGG
1 CGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCACGGGCACCATCGG
* * * * *
44245637 CACCTGGGCGCTCGGATGTGCGGGAGCGTCGGACACCATCGGCAAACTAAGCCCTTGCTCGTATG
66 CACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACAACATCGGAAAACTAAGCCCTTGCTCGTAAG
* * ** *
44245702 GGCA-CCTCGGGCAACATCGGCCCCTCGGTGCTAT-GATGTGTGGGAGCCTC-GG-ACAAT-GTC
131 GG-AGCCTCGGGCAACATCAGCACCTCGGTGCT-TGGATGTCCGGGAGCCTCAGGCACAATCGGC
* * *
44245762 AGCATCCTAGGCCCTTGGTCGTGC-AG-GACTCTCGAG-CACCATCGACACCTTGGTGCTTGGAT
194 AG-A--ATAGGCCCTTGGTCGTGCGAGAG-C-CTCG-GCCACCATCAACACCTAGGTGCTTGGAT
* *
44245824 GTACGGGAACCTCGGACACCATCGACAACCTAGGCCCTT
253 GTACGGGAACCTCGGACACCATCGAAAAACTAGGCCCTT
44245863 GGTCGTGTGA
Statistics
Matches: 245, Mismatches: 38, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
295 4 0.02
296 6 0.02
297 5 0.02
298 227 0.93
299 3 0.01
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (298 bp):
CGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCACGGGCACCATCGG
CACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACAACATCGGAAAACTAAGCCCTTGCTCGTAAG
GGAGCCTCGGGCAACATCAGCACCTCGGTGCTTGGATGTCCGGGAGCCTCAGGCACAATCGGCAG
AATAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCAACACCTAGGTGCTTGGATGTACGGGA
ACCTCGGACACCATCGAAAAACTAGGCCCTTATTCCTT
Found at i:44245911 original size:383 final size:383
Alignment explanation
Indices: 44245169--44245975 Score: 833
Period size: 383 Copynumber: 2.1 Consensus size: 383
44245159 CATGATCAGC
*
44245169 AAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCG
1 AAACTAGGCCCTTAGTCTTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCG
* * * *
44245234 GGAGCCTTGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCAA
66 AGAGCCTTGAGCACCATCGACACCTGGGCGCTCGGATGTGCGGGAACCTCGGACACCATCGGCAA
* * * * * * *
44245299 CCTAGGCCCTTGGTCGTGCGAGAGCCACGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGC
131 ACTAAGCCCTTGCTCGTACGAGAGCCACGGGCAACATCGGCACCTAGGCGCTAGGATGTGCGGGA
** * * * * *
44245364 GCCTCTTATAACATCGGAAAACTGGGCCCTTGGTCGTAAGGGAGCCTCGGGCACCATCAGCAGCT
196 GCCTCGGACAACATCAGAAAACTAGGCCCTTGGTCGTAAGGGAGCCTCGAGCACCATCAGCACCT
* * * *
44245429 CGGTGCTTGGATGTCCGGGAGCCTCAGGCACCATCGGCAGAATAGGCCCTTTGTCGTGCGAGAGC
261 CGGTGCTTGGATGTACGGGAACCTCAGGCACCATCGACAGAATAGGCCCTTGGTCGTGCGAGAGC
* * * *
44245494 CTCGGCCACCATCAAGACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGAA
326 CTCGGCCACCATCAAGACCAAGGGGCTCGGATGTGCGGGAGCCTCAGACACCATCGAA
* * * ** ** *
44245552 AAACTAGGCCCTTATTCCTT-CGGGAGCCTCGGGCATCATCGGTAGCCTAGGCCCTTGGTCTTGC
1 AAACTAGGCCCTTAGT-CTTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGC
* * * * *
44245616 GAGAG-TTTCGGGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGAGCGTCGGACACCATCGGC
65 GAGAGCCTT-GAGCACCATCGACACCTGGGCGCTCGGATGTGCGGGAACCTCGGACACCATCGGC
* * * * * * * *
44245680 AAACTAAGCCCTTGCTCGTATGGGCA-CCTCGGGCAACATCGGCCCCTCGGTGCTATGATGTGTG
129 AAACTAAGCCCTTGCTCGTACGAG-AGCCACGGGCAACATCGGCACCTAGGCGCTAGGATGTGCG
** * ** *
44245744 GGAGCCTCGGACAATGTCAGCATCCTAGGCCCTTGGTCGTGCA-GGA-CTCTCGAGCACCATC-G
193 GGAGCCTCGGACAACATCAGAAAACTAGGCCCTTGGTCGT-AAGGGAGC-CTCGAGCACCATCAG
* *
44245806 ACACCTTGGTGCTTGGATGTACGGGAACCTC-GGACACCATCGACA-ACCTAGGCCCTTGGTCGT
256 -CACCTCGGTGCTTGGATGTACGGGAACCTCAGG-CACCATCGACAGA-ATAGGCCCTTGGTCGT
* * ** * **
44245869 GTGAGAGCCTCGGGCACTGTC-GGCACCAAGGGGCTCGGATGTGCGGGAGGGTCAGACACCATCG
318 GCGAGAGCCTCGGCCACCATCAAG-ACCAAGGGGCTCGGATGTGCGGGAGCCTCAGACACCATCG
**
44245933 GC
382 AA
* * **
44245935 AAACTAAGCCCTTGGTCGCGCGGGAGCCTCAGG-CACCATCG
1 AAACTAGGCCCTTAGTCTTGCGGGAGCCTC-GGACACCATCG
44245976 TCACCTCGGT
Statistics
Matches: 342, Mismatches: 71, Indels: 22
0.79 0.16 0.05
Matches are distributed among these distances:
382 9 0.03
383 326 0.95
384 7 0.02
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (383 bp):
AAACTAGGCCCTTAGTCTTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCG
AGAGCCTTGAGCACCATCGACACCTGGGCGCTCGGATGTGCGGGAACCTCGGACACCATCGGCAA
ACTAAGCCCTTGCTCGTACGAGAGCCACGGGCAACATCGGCACCTAGGCGCTAGGATGTGCGGGA
GCCTCGGACAACATCAGAAAACTAGGCCCTTGGTCGTAAGGGAGCCTCGAGCACCATCAGCACCT
CGGTGCTTGGATGTACGGGAACCTCAGGCACCATCGACAGAATAGGCCCTTGGTCGTGCGAGAGC
CTCGGCCACCATCAAGACCAAGGGGCTCGGATGTGCGGGAGCCTCAGACACCATCGAA
Found at i:44245912 original size:255 final size:256
Alignment explanation
Indices: 44245597--44246081 Score: 618
Period size: 255 Copynumber: 1.9 Consensus size: 256
44245587 TCATCGGTAG
* ** *
44245597 CCTAGGCCCTTGGTCTTGCGAGAGTTTCGGGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGA
1 CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCAGGGCGCTCGGATGTGCGGGA
* * * * *
44245662 GCGTCGGACACCATCGGCAAACTAAGCCCTTGCTCGTATGGGCA-CCTCGGGCAACATCGGCCCC
66 GCGTCAGACACCATCGGCAAACTAAGCCCTTGCTCGCACGGG-AGCCTCAGGCAACATCGGCACC
* * ** ** * **
44245726 TCGGTGCTATGATGTGTGGGAGCCTCGGACAATGTCAGCATCCTAGGCCCTTGGTCGTGCAGGA-
130 TCGGTGCTAGGATGTGCGGGAGCCTCGGACAACATCAGCATAATAGGCCCTTCGTCGTGCAAAAG
*
44245790 CTCTCGAGCACCATCGACACCTTGGT-GCTTGGATGTACGGGAACCTCGGACACCATCGACAA
195 C-CTCGAGCACCATCGACACCTTGGTGGCTCGGATGTACGGGAACCTCGGACACCATCGACAA
* **
44245852 CCTAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACTGTCGGCACCAAGGG-GCTCGGATGTGCGGG
1 CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACC-AGGGCGCTCGGATGTGCGGG
* * * * *
44245916 AGGGTCAGACACCATCGGCAAACTAAGCCCTTGGTCGCGCGGGAGCCTCAGGCACCATCGTCACC
65 AGCGTCAGACACCATCGGCAAACTAAGCCCTTGCTCGCACGGGAGCCTCAGGCAACATCGGCACC
* * * *
44245981 TCGGTGCTCGGATGTGCGGGAGCCTTGGGCACCATCAGCATAATAGGCCCTTCGTCGTGCAAAAG
130 TCGGTGCTAGGATGTGCGGGAGCCTCGGACAACATCAGCATAATAGGCCCTTCGTCGTGCAAAAG
* *
44246046 CCTCGGGCACCATCGACACCTTTGTGGCTCGGATGT
195 CCTCGAGCACCATCGACACCTTGGTGGCTCGGATGT
44246082 GTGGGAGCCT
Statistics
Matches: 193, Mismatches: 33, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
254 1 0.01
255 179 0.93
256 13 0.07
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.20
Consensus pattern (256 bp):
CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCAGGGCGCTCGGATGTGCGGGA
GCGTCAGACACCATCGGCAAACTAAGCCCTTGCTCGCACGGGAGCCTCAGGCAACATCGGCACCT
CGGTGCTAGGATGTGCGGGAGCCTCGGACAACATCAGCATAATAGGCCCTTCGTCGTGCAAAAGC
CTCGAGCACCATCGACACCTTGGTGGCTCGGATGTACGGGAACCTCGGACACCATCGACAA
Found at i:44246091 original size:43 final size:43
Alignment explanation
Indices: 44246044--44246215 Score: 177
Period size: 43 Copynumber: 4.0 Consensus size: 43
44246034 GTCGTGCAAA
* * * *
44246044 AGCCTCGGGCACCATCGACACCTTTGTGGCTCGGATGTGTGGG
1 AGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGG
* * * * * *
44246087 AGCCTCGAGTAGCATGGGCACCATGGTGGCTCGAATGTACGGG
1 AGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGG
*
44246130 AGCCTC-AGACACCATCGGCAACCTTGGT-GCTTGGATGTGCGGG
1 AGCCTCGAG-CACCATCGGC-ACCTTGGTGGCTCGGATGTGCGGG
* * * *
44246173 ACCCTCGAGCACCATCGGCACCTTAGTGCCTGGGATGTGCGGG
1 AGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGG
44246216 CTAAAGAAAA
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
42 9 0.09
43 86 0.83
44 9 0.09
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (43 bp):
AGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGG
Found at i:44249306 original size:43 final size:43
Alignment explanation
Indices: 44249258--44249353 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
44249248 CTCCCCACTG
* * * *
44249258 TCGGCACCTTGATGGCTCGGATGTGCCGAAGCCTCGAGCAGCA
1 TCGGCACCTTGATGCCTCAGATGTGCCGAAGCCTCGACCACCA
* ** *
44249301 TCGGCACCTTGGTGCCTCAGATGTGTGGGAGCCTCGACCACCA
1 TCGGCACCTTGATGCCTCAGATGTGCCGAAGCCTCGACCACCA
44249344 TCGAGCACCT
1 TCG-GCACCT
44249354 CTTTCTTCAC
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 38 0.86
44 6 0.14
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (43 bp):
TCGGCACCTTGATGCCTCAGATGTGCCGAAGCCTCGACCACCA
Found at i:44252956 original size:23 final size:23
Alignment explanation
Indices: 44252930--44253034 Score: 73
Period size: 23 Copynumber: 4.8 Consensus size: 23
44252920 ATTCTTTGGA
44252930 AGCCTTTGTGGCATATTCAGTGT
1 AGCCTTTGTGGCATATTCAGTGT
* *
44252953 AGCC-TTG-AG--TATTTAGTGT
1 AGCCTTTGTGGCATATTCAGTGT
*
44252972 AGCC-TTGTGGCATATTCTGTG-
1 AGCCTTTGTGGCATATTCAGTGT
* *
44252993 ATGCCTATGTAGCATATT--GTGT
1 A-GCCTTTGTGGCATATTCAGTGT
*
44253015 GATGCCTTTGTGGCGTATTC
1 -A-GCCTTTGTGGCATATTC
44253035 TGTAACGCCC
Statistics
Matches: 64, Mismatches: 10, Indels: 15
0.72 0.11 0.17
Matches are distributed among these distances:
19 16 0.25
20 1 0.02
21 5 0.08
22 13 0.20
23 29 0.45
ACGTcount: A:0.17, C:0.16, G:0.27, T:0.40
Consensus pattern (23 bp):
AGCCTTTGTGGCATATTCAGTGT
Found at i:44256015 original size:50 final size:52
Alignment explanation
Indices: 44255952--44256055 Score: 131
Period size: 50 Copynumber: 2.0 Consensus size: 52
44255942 CAAGAACACT
* * * *
44255952 CCTGGGCACCAAGTTCCTAGCCCGTAGGC-TAACATCC-CTCCAAAAACATG
1 CCTGGGAACCAAGTGCCAAGCCCGTAGGCTTAACATCCTCCCCAAAAACATG
* * *
44256002 CCTGGGAACCAAGTGCCAAGCCTGTAGGCTTTACATCCTCCCCAGAAACATG
1 CCTGGGAACCAAGTGCCAAGCCCGTAGGCTTAACATCCTCCCCAAAAACATG
44256054 CC
1 CC
44256056 AAGATCACTA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
50 25 0.56
51 7 0.16
52 13 0.29
ACGTcount: A:0.27, C:0.36, G:0.19, T:0.18
Consensus pattern (52 bp):
CCTGGGAACCAAGTGCCAAGCCCGTAGGCTTAACATCCTCCCCAAAAACATG
Found at i:44257556 original size:20 final size:21
Alignment explanation
Indices: 44257519--44257558 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
44257509 TATACGAAGT
*
44257519 AAAAAAAAGAGTTCGAATATA
1 AAAAAAAAGAATTCGAATATA
44257540 AAAAAAAAGAATT-GAATAT
1 AAAAAAAAGAATTCGAATAT
44257559 TTTGTTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.65, C:0.03, G:0.12, T:0.20
Consensus pattern (21 bp):
AAAAAAAAGAATTCGAATATA
Found at i:44260041 original size:19 final size:20
Alignment explanation
Indices: 44260007--44260045 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
44259997 GCAAGCTGAT
44260007 TTTAGCTCGATTTCAGCTCC
1 TTTAGCTCGATTTCAGCTCC
44260027 TTTAGCTCG-TTTCAGCTCC
1 TTTAGCTCGATTTCAGCTCC
44260046 AACAAGCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.13, C:0.31, G:0.15, T:0.41
Consensus pattern (20 bp):
TTTAGCTCGATTTCAGCTCC
Found at i:44260073 original size:20 final size:20
Alignment explanation
Indices: 44260050--44260088 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
44260040 AGCTCCAACA
*
44260050 AGCTCATTTGAGCTCAATTC
1 AGCTCATTCGAGCTCAATTC
44260070 AGCTCATTCGAGCTCAATT
1 AGCTCATTCGAGCTCAATT
44260089 TAGTTTCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (20 bp):
AGCTCATTCGAGCTCAATTC
Found at i:44262648 original size:25 final size:24
Alignment explanation
Indices: 44262615--44262762 Score: 106
Period size: 25 Copynumber: 6.0 Consensus size: 24
44262605 TTACATGTAT
* *
44262615 GCTCACACGAGCTATGAATCGGTAT
1 GCTCTCACGAGCTA-GAATCGGTAA
*
44262640 GCTCTCACGAG-TAGTAAATTGGTAA
1 GCTCTCACGAGCTAG--AATCGGTAA
* *
44262665 GCTCAT-ACAAGCTGAGAATCGATAA
1 GCTC-TCACGAGCT-AGAATCGGTAA
* * *
44262690 GCTCTCACGAGAT-GCAATTGATAA
1 GCTCTCACGAGCTAG-AATCGGTAA
44262714 GCTCAT-ACGAGCTGAGAATCGGTAA
1 GCTC-TCACGAGCT-AGAATCGGTAA
* *
44262739 GCTCGCACGAGCTACAATCGGTAA
1 GCTCTCACGAGCTAGAATCGGTAA
44262763 TCCCTAATGA
Statistics
Matches: 98, Mismatches: 14, Indels: 23
0.73 0.10 0.17
Matches are distributed among these distances:
23 2 0.02
24 31 0.32
25 60 0.61
26 3 0.03
27 2 0.02
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (24 bp):
GCTCTCACGAGCTAGAATCGGTAA
Found at i:44262727 original size:49 final size:50
Alignment explanation
Indices: 44262615--44262749 Score: 168
Period size: 49 Copynumber: 2.7 Consensus size: 50
44262605 TTACATGTAT
* * *
44262615 GCTCACACGAGCT-ATGAATCGGTATGCTCTCACGAGTAGTAAATTGGTAA
1 GCTCATACGAGCTGA-GAATCGGTAAGCTCTCACGAGTAGTAAATTGATAA
* * *
44262665 GCTCATACAAGCTGAGAATCGATAAGCTCTCACGAG-A-TGCAATTGATAA
1 GCTCATACGAGCTGAGAATCGGTAAGCTCTCACGAGTAGT-AAATTGATAA
*
44262714 GCTCATACGAGCTGAGAATCGGTAAGCTCGCACGAG
1 GCTCATACGAGCTGAGAATCGGTAAGCTCTCACGAG
44262750 CTACAATCGG
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.01
49 42 0.57
50 30 0.41
51 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.22
Consensus pattern (50 bp):
GCTCATACGAGCTGAGAATCGGTAAGCTCTCACGAGTAGTAAATTGATAA
Found at i:44267237 original size:50 final size:49
Alignment explanation
Indices: 44267151--44267289 Score: 147
Period size: 50 Copynumber: 2.8 Consensus size: 49
44267141 ACATGCCAAA
* * * **
44267151 GCCATGTCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCC-C
1 GCCATGTCCCAGACATAGTCTTACAGGGGACCTCTCATATCGGTGCCAC
* *
44267199 GTACCATG-CCCTAGACATAGTCTTACGGGGGACCTCTCATCTCGGTGCCAAC
1 G--CCATGTCCC-AGACATAGTCTTACAGGGGACCTCTCATATCGGTGCC-AC
* *
44267251 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
1 GCCATGTCCCAGACATAGTCTTACAGGGGACCTCTCATA
44267290 ACATCAATGA
Statistics
Matches: 74, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
48 1 0.01
49 3 0.04
50 65 0.88
51 3 0.04
52 2 0.03
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (49 bp):
GCCATGTCCCAGACATAGTCTTACAGGGGACCTCTCATATCGGTGCCAC
Found at i:44276380 original size:19 final size:19
Alignment explanation
Indices: 44276352--44276393 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
44276342 TGAAATCTAA
*
44276352 GAGAGTTGAGAGAGAGGAT
1 GAGAGATGAGAGAGAGGAT
* *
44276371 GAGAGATGAGAGGGATGAT
1 GAGAGATGAGAGAGAGGAT
44276390 GAGA
1 GAGA
44276394 TGAGGGATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.48, T:0.14
Consensus pattern (19 bp):
GAGAGATGAGAGAGAGGAT
Found at i:44276393 original size:17 final size:16
Alignment explanation
Indices: 44276358--44276404 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 16
44276348 CTAAGAGAGT
44276358 TGAGA-GAGAGGATGA
1 TGAGATGAGAGGATGA
44276373 -GAGATGAGAGGGATGA
1 TGAGATGAGA-GGATGA
44276389 TGAGATGAG-GGATGA
1 TGAGATGAGAGGATGA
44276404 T
1 T
44276405 TGAAAAAGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.14
15 11 0.38
16 6 0.21
17 8 0.28
ACGTcount: A:0.36, C:0.00, G:0.47, T:0.17
Consensus pattern (16 bp):
TGAGATGAGAGGATGA
Found at i:44281956 original size:37 final size:37
Alignment explanation
Indices: 44281906--44281984 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
44281896 TTATTACGAA
* *
44281906 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
44281943 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
44281980 GTCTT
1 GTCTT
44281985 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:44282181 original size:47 final size:47
Alignment explanation
Indices: 44282103--44283627 Score: 2798
Period size: 47 Copynumber: 32.4 Consensus size: 47
44282093 CCCTTCGGGA
* * * * * * * *
44282103 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
* *
44282150 CCTGTCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44282197 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
*
44282244 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
* *
44282291 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
*
44282338 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
* ** *
44282385 CTTATCACACATATACACTTTCACAAACATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44282432 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44282479 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44282526 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44282573 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44282620 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
* *
44282667 CTTATCACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
* ** *
44282714 CTTATCACACATATACACTTTCACAAACATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44282761 CTTATCACATATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44282810 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44282857 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44282904 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44282951 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44282998 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44283045 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44283092 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44283139 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44283186 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44283233 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44283280 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44283327 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44283374 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44283421 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44283468 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44283515 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
* *
44283562 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
44283609 CTTATCACATATATACACT
1 CTTATCACATATATACACT
44283628 GTCTTGGCTG
Statistics
Matches: 1438, Mismatches: 38, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
47 1395 0.97
49 43 0.03
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
Found at i:44285968 original size:20 final size:20
Alignment explanation
Indices: 44285919--44285968 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
44285909 CAAGATGTAC
* *
44285919 GGGTAGAAGTGGACTTGTAT
1 GGGTAGAAGTGGACCTATAT
* *
44285939 GGATAAAAGTGGACCTATAT
1 GGGTAGAAGTGGACCTATAT
44285959 GGGTAGAAGT
1 GGGTAGAAGT
44285969 CCCAAAAGTT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.06, G:0.36, T:0.26
Consensus pattern (20 bp):
GGGTAGAAGTGGACCTATAT
Found at i:44287480 original size:29 final size:28
Alignment explanation
Indices: 44287390--44287500 Score: 93
Period size: 29 Copynumber: 3.9 Consensus size: 28
44287380 ATAATTTAAG
44287390 AAATAAATAT-AATATAAATTAAAATATTA
1 AAATAAAT-TGAA-ATAAATTAAAATATTA
* * * *
44287419 AAACAAATTTAAATAAATTAGCAATATTG
1 AAATAAATTGAAATAAATTA-AAATATTA
* *
44287448 AAATAAGTTGAAATAAATTAAAGATGTTA
1 AAATAAATTGAAATAAATTAAA-ATATTA
* *
44287477 AAAT-ATTTGAAAGAAA-TAAAATAT
1 AAATAAATTGAAATAAATTAAAATAT
44287501 CTATACGAAA
Statistics
Matches: 67, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
26 3 0.04
27 4 0.06
28 20 0.30
29 40 0.60
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (28 bp):
AAATAAATTGAAATAAATTAAAATATTA
Found at i:44287844 original size:9 final size:9
Alignment explanation
Indices: 44287815--44287871 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
44287805 TAATATTATC
*
44287815 AATAATAGC
1 AATAATAGT
44287824 AATAATAGT
1 AATAATAGT
*
44287833 AATAATATT
1 AATAATAGT
*
44287842 AATAATAAT
1 AATAATAGT
*
44287851 GAA-AGTAGT
1 -AATAATAGT
*
44287860 AATAATAAT
1 AATAATAGT
44287869 AAT
1 AAT
44287872 TTTAATAACA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
8 2 0.05
9 35 0.90
10 2 0.05
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.32
Consensus pattern (9 bp):
AATAATAGT
Found at i:44291127 original size:89 final size:89
Alignment explanation
Indices: 44290842--44291441 Score: 853
Period size: 89 Copynumber: 6.8 Consensus size: 89
44290832 NNNNNNNNNN
* * *
44290842 CTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGAAAAA
1 CTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAG
* * *
44290907 GCTTCCTATCCTCGATCTACTTCA
66 GCTTGCTATCTTCGATCTACTTCG
* * * * * * * *
44290931 TTGCTAATACAGGAAGATAATATCTGTTATTTTCAACCTACTCCACTACTGCCCAGAGAGATAAG
1 CTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAG
* ***
44290996 GC-CGGGGTCTTCGATCTACTTCG
66 GCTTGCTATCTTCGATCTACTTCG
*
44291019 CTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAG
1 CTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAG
44291084 GCTTGCTATCTTCGATCTACTTCG
66 GCTTGCTATCTTCGATCTACTTCG
* * * *
44291108 CTGCTAATATAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTGCTGTTCAGGGAGATAAG
1 CTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAG
*
44291173 GCTTGCTATCTTTGATCTACTTCG
66 GCTTGCTATCTTCGATCTACTTCG
* * *
44291197 CTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTACTGCTCAAGGAGATAAG
1 CTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAG
44291262 GCTTGCTATCTTCGATCTACTTCG
66 GCTTGCTATCTTCGATCTACTTCG
* * * **
44291286 CTGCTAATACAGGAAGATAAGATCTGTTATTTTCAACCTACTCCACTGCTGCTCAATGAGATAAG
1 CTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAG
***
44291351 GC-TGGGGTCTTCGATCTACTTCG
66 GCTTGCTATCTTCGATCTACTTCG
* *
44291374 CTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACTTACTCCACTACTGCTCAGGGAGATAAG
1 CTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAG
44291439 GCT
66 GCT
44291442 GGGGTCTTCG
Statistics
Matches: 452, Mismatches: 57, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
88 150 0.33
89 302 0.67
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (89 bp):
CTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAG
GCTTGCTATCTTCGATCTACTTCG
Found at i:44291141 original size:177 final size:177
Alignment explanation
Indices: 44290842--44291441 Score: 932
Period size: 177 Copynumber: 3.4 Consensus size: 177
44290832 NNNNNNNNNN
* * *
44290842 CTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGAAAAA
1 CTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTACTGCTCAGGGAGATAAG
* * ** *
44290907 GCTTCCTATCCTCGATCTACTTCATTGCTAATACAGGAAGATAATATCTGTTATTTTCAACCTAC
66 GCTTGCTATCTTCGATCTACTTCGCTGCTAATACAGGAAGATAAGATCTGTTATTTTCAACCTAC
* * *
44290972 TCCACTACTGCCCAGAGAGATAAGGCCGGGGTCTTCGATCTACTTCG
131 TCCACTGCTGCTCAGAGAGATAAGGCTGGGGTCTTCGATCTACTTCG
*
44291019 CTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAG
1 CTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTACTGCTCAGGGAGATAAG
* * **
44291084 GCTTGCTATCTTCGATCTACTTCGCTGCTAATATAGGAAGACAAGATCTACTATTTTCAACCTAC
66 GCTTGCTATCTTCGATCTACTTCGCTGCTAATACAGGAAGATAAGATCTGTTATTTTCAACCTAC
* * *** *
44291149 TCCACTGCTGTTCAGGGAGATAAGGCTTGCTATCTTTGATCTACTTCG
131 TCCACTGCTGCTCAGAGAGATAAGGC-TGGGGTCTTCGATCTACTTCG
** *
44291197 CTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTACTGCTCAAGGAGATAAG
1 CTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTACTGCTCAGGGAGATAAG
44291262 GCTTGCTATCTTCGATCTACTTCGCTGCTAATACAGGAAGATAAGATCTGTTATTTTCAACCTAC
66 GCTTGCTATCTTCGATCTACTTCGCTGCTAATACAGGAAGATAAGATCTGTTATTTTCAACCTAC
44291327 TCCACTGCTGCTCA-ATGAGATAAGGCTGGGGTCTTCGATCTACTTCG
131 TCCACTGCTGCTCAGA-GAGATAAGGCTGGGGTCTTCGATCTACTTCG
* *
44291374 CTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACTTACTCCACTACTGCTCAGGGAGATAAG
1 CTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTACTGCTCAGGGAGATAAG
44291439 GCT
66 GCT
44291442 GGGGTCTTCG
Statistics
Matches: 384, Mismatches: 37, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
177 223 0.58
178 161 0.42
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (177 bp):
CTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTACTGCTCAGGGAGATAAG
GCTTGCTATCTTCGATCTACTTCGCTGCTAATACAGGAAGATAAGATCTGTTATTTTCAACCTAC
TCCACTGCTGCTCAGAGAGATAAGGCTGGGGTCTTCGATCTACTTCG
Found at i:44291327 original size:45 final size:45
Alignment explanation
Indices: 44291011--44291415 Score: 220
Period size: 45 Copynumber: 9.1 Consensus size: 45
44291001 GGTCTTCGAT
* * *
44291011 CTACTTCGCTGCCAATACAGGAAGACAAGATCTACTATTTTCAAC
1 CTACTTCGCTGCTAATACAGGAAGATAAGATCTGCTATTTTCAAC
* * ** * * * * *
44291056 CTACTCCACTGCTGCT-CAGGGAGATAAG-GCTTGCTATCTTCGAT
1 CTACTTCGCTGCTAATACAGGAAGATAAGATC-TGCTATTTTCAAC
* * *
44291100 CTACTTCGCTGCTAATATAGGAAGACAAGATCTACTATTTTCAAC
1 CTACTTCGCTGCTAATACAGGAAGATAAGATCTGCTATTTTCAAC
* * * * * * * *
44291145 CTACTCCACTGCT-GTTCAGGGAGATAAG-GCTTGCTATCTTT-GAT
1 CTACTTCGCTGCTAATACAGGAAGATAAGATC-TGCTAT-TTTCAAC
* * *
44291189 CTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAAC
1 CTACTTCGCTGCTAATACAGGAAGATAAGATCTGCTATTTTCAAC
* * * ** * * * *
44291234 CTACTCCACTACTGCT-CAAGG-AGATAAG-GCTTGCTATCTTCGAT
1 CTACTTCGCTGCTAATAC-AGGAAGATAAGATC-TGCTATTTTCAAC
*
44291278 CTACTTCGCTGCTAATACAGGAAGATAAGATCTGTTATTTTCAAC
1 CTACTTCGCTGCTAATACAGGAAGATAAGATCTGCTATTTTCAAC
* * ** * * *** * * *
44291323 CTACTCCACTGCTGCT-CAATG-AGATAAG-GCTGGGGTCTTCGAT
1 CTACTTCGCTGCTAATAC-AGGAAGATAAGATCTGCTATTTTCAAC
* *
44291366 CTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAAC
1 CTACTTCGCTGCTAATACAGGAAGATAAGATCTGCTATTTTCAAC
*
44291411 TTACT
1 CTACT
44291416 CCACTACTGC
Statistics
Matches: 248, Mismatches: 95, Indels: 34
0.66 0.25 0.09
Matches are distributed among these distances:
43 24 0.10
44 105 0.42
45 116 0.47
46 3 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (45 bp):
CTACTTCGCTGCTAATACAGGAAGATAAGATCTGCTATTTTCAAC
Found at i:44293701 original size:6 final size:6
Alignment explanation
Indices: 44293686--44293724 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
44293676 TGGCCTCTCC
*
44293686 TTTT-T TTTTCT TTTTCT TTTTCA TTTTC- TTTTCT TTTTC
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTC
44293725 CATCATTTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
5 9 0.29
6 22 0.71
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTCT
Found at i:44293755 original size:16 final size:16
Alignment explanation
Indices: 44293736--44293771 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
44293726 ATCATTTTCA
44293736 TTTTCATTTTTTTGAT
1 TTTTCATTTTTTTGAT
*
44293752 TTTTGATTTTTTTGAT
1 TTTTCATTTTTTTGAT
44293768 TTTT
1 TTTT
44293772 TTTAACTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.03, G:0.08, T:0.78
Consensus pattern (16 bp):
TTTTCATTTTTTTGAT
Found at i:44293774 original size:10 final size:9
Alignment explanation
Indices: 44293736--44293773 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
44293726 ATCATTTTCA
*
44293736 TTTTCATTT
1 TTTTGATTT
44293745 TTTTGA--T
1 TTTTGATTT
44293752 TTTTGATTT
1 TTTTGATTT
44293761 TTTTGATTT
1 TTTTGATTT
44293770 TTTT
1 TTTT
44293774 TAACTCATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
7 7 0.27
9 19 0.73
ACGTcount: A:0.11, C:0.03, G:0.08, T:0.79
Consensus pattern (9 bp):
TTTTGATTT
Found at i:44298047 original size:18 final size:16
Alignment explanation
Indices: 44298026--44298070 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 16
44298016 TGGGCTACTG
44298026 TTTGGTGTTTTGGGTTCA
1 TTTGG-GTTTTGGGTT-A
44298044 TTTGGGTTATTGGGTTA
1 TTTGGGTT-TTGGGTTA
44298061 -TTGGGTTTTG
1 TTTGGGTTTTG
44298071 ATTTTGGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 3 0.12
16 7 0.27
17 4 0.15
18 12 0.46
ACGTcount: A:0.07, C:0.02, G:0.36, T:0.56
Consensus pattern (16 bp):
TTTGGGTTTTGGGTTA
Found at i:44299052 original size:30 final size:31
Alignment explanation
Indices: 44299018--44299094 Score: 88
Period size: 30 Copynumber: 2.5 Consensus size: 31
44299008 AAAATTTCGT
*
44299018 CCCTTAAAAGTTGGTAAAAAAAGTTTTGGG-
1 CCCTTAAAAGTTGGTAAAAAAACTTTTGGGA
* *
44299048 CCCTTAAAAGCT--AAAAAAAACTTTTGGGA
1 CCCTTAAAAGTTGGTAAAAAAACTTTTGGGA
*
44299077 CCCCTTGAAAGTTGGTAA
1 -CCCTTAAAAGTTGGTAA
44299095 TTTTTTTTAC
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
28 14 0.38
30 21 0.57
32 2 0.05
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (31 bp):
CCCTTAAAAGTTGGTAAAAAAACTTTTGGGA
Found at i:44299409 original size:22 final size:24
Alignment explanation
Indices: 44299354--44299410 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 24
44299344 TTCCTTTTTT
*
44299354 TATATAATTTTACTTCTTTTAAGGCA
1 TATATAATTTTACTTATTTTAA-G-A
44299380 TATATAATTTTACTTATTTTAA-A
1 TATATAATTTTACTTATTTTAAGA
44299403 TA-ATAATT
1 TATATAATT
44299411 ATTTATTCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
22 6 0.20
23 3 0.10
26 21 0.70
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.53
Consensus pattern (24 bp):
TATATAATTTTACTTATTTTAAGA
Found at i:44299966 original size:27 final size:26
Alignment explanation
Indices: 44299928--44299992 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 26
44299918 TAATTTTAAA
*
44299928 TATAAAAGTATAAAAATAATTGAAAAT
1 TATAAAAATAT-AAAATAATTGAAAAT
*
44299955 TATAAAAATATAAAATAATTGGAAAT
1 TATAAAAATATAAAATAATTGAAAAT
44299981 TATAAGAAATAT
1 TATAA-AAATAT
44299993 GTATACTAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 19 0.54
27 16 0.46
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (26 bp):
TATAAAAATATAAAATAATTGAAAAT
Found at i:44313479 original size:21 final size:21
Alignment explanation
Indices: 44313454--44313498 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
44313444 TTAGTATGAT
44313454 TTTAAAATATAAAATATATTA
1 TTTAAAATATAAAATATATTA
* * * *
44313475 TTTAAATTGTTAATTATATTA
1 TTTAAAATATAAAATATATTA
44313496 TTT
1 TTT
44313499 GAATGCATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
TTTAAAATATAAAATATATTA
Found at i:44315744 original size:617 final size:617
Alignment explanation
Indices: 44314213--44322121 Score: 5504
Period size: 617 Copynumber: 12.3 Consensus size: 617
44314203 NNNNNNNNNN
* *
44314213 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAAGTCGCAATGCATACTGTG
1 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATGCACACTGTG
* *
44314278 CAATACCCTCATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
66 CAATACCATGATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
*
44314343 TCAGGAAACACGTTAGGAGAATCCTTAATCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
131 TCAGGAAACACGTTAGGAGAATCCTTAACCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
44314408 TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
196 TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
*
44314473 TTGAAACCACATTGGACATTAAT-CCTAGTCTTTCACCAACAACAAAAATTTCCAACCCATCACT
261 TTGAAACCACATTGGACATTAATCCCGA-TCTTTCACCAACAACAAAAATTTCCAACCCATCACT
44314537 ATTCCTCAAAGTAATTCGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACTAAACAAGTCCA
325 ATTCCTCAAAGTAATTCGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACTAAACAAGTCCA
*
44314602 TACCAAGAATCACATAAAACCGTAGAACAAAAATTCCATACGATCATTAGAGAAAATGTGCCCTT
390 TACCAAGAATCACATAAAACCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCTT
*
44314667 GAACCATAATGGGACATCTACAATAAATTTTACTCACTTTCACACTATCACCAAAGGAACTAATA
455 GAACCATAATGGGACATCTACAATAAATTTTACTCACTTCCACACTATCACCAAAGGAACTAATA
*
44314732 ACATATTTGAATCGTACCATCCTTCTTCTTTTTCACAAACAAAACTGGTGCACCCTACAGAGATA
520 ACATATTTGCATCGTACCATCCTTCTTC---TTCACAAACAAAACTGGTGCACCCTACAGAGATA
44314797 CACTCGGTCGAATGAACCTTCTATTAAGGAACTCTT
582 CACTCGGTCGAATGAACCTTCTATTAAGGAACTCTT
44314833 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATGCACACTGTG
1 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATGCACACTGTG
* *
44314898 CAATACCCTCATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
66 CAATACCATGATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
*
44314963 TCAGGAAACACGTTAGGAGAATCCTTAATCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
131 TCAGGAAACACGTTAGGAGAATCCTTAACCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
44315028 TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
196 TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
*
44315093 TTGAAACCACATTGGACATTAATCCCGGTCTTTCACCAACAACAAAAATTTCCAACCCATCACTA
261 TTGAAACCACATTGGACATTAATCCCGATCTTTCACCAACAACAAAAATTTCCAACCCATCACTA
44315158 TTCCTCAAAGTAATTCGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACTAAACAAGTCCAT
326 TTCCTCAAAGTAATTCGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACTAAACAAGTCCAT
44315223 ACCAAGAATCACATAAAACCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCTTG
391 ACCAAGAATCACATAAAACCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCTTG
*
44315288 AACCATAATGGGACATCTACAATAAATTTTACTCACTTTCACACTATCACCAAAGGAACTAATAA
456 AACCATAATGGGACATCTACAATAAATTTTACTCACTTCCACACTATCACCAAAGGAACTAATAA
44315353 CATATTTGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGAGATACACT
521 CATATTTGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGAGATACACT
44315418 CGGTCGAATGAACCTTCTATTAAGGAACTCTT
586 CGGTCGAATGAACCTTCTATTAAGGAACTCTT
44315450 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATGCACACTGTG
1 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATGCACACTGTG
44315515 CAATACCATGATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
66 CAATACCATGATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
44315580 TCAGGAAACACGTTAGGAGAATCCTTAACCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
131 TCAGGAAACACGTTAGGAGAATCCTTAACCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
* * *
44315645 TGAATTTATCATATAAGCTAAGTAAGGGTCACAACATTTTCCTATCATCTTCTCAGCTTTCATAT
196 TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
*
44315710 TTGAAACCACATTGGACATTAATCCCGATCTTTCACCAACAACAAAAATATCCAACCCATCACTA
261 TTGAAACCACATTGGACATTAATCCCGATCTTTCACCAACAACAAAAATTTCCAACCCATCACTA
* *
44315775 TTCCTCAAAGTAATTCGTTTCATCTCAAAATCTACCTTAGCCATATGCTCACTCAACAAGTCCAT
326 TTCCTCAAAGTAATTCGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACTAAACAAGTCCAT
44315840 ACCAAGAATCACATAAAACCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCTTG
391 ACCAAGAATCACATAAAACCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCTTG
44315905 AACCATAATGGGACATCTACAATAAATTTTACTCACTTCCACACTATCACCAAAGGAACTAATAA
456 AACCATAATGGGACATCTACAATAAATTTTACTCACTTCCACACTATCACCAAAGGAACTAATAA
* *
44315970 CATAGTTGCATCGTTCCATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGAGATACACT
521 CATATTTGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGAGATACACT
44316035 CGGTCGAATGAACCTTCTATTAAGGAACTCTT
586 CGGTCGAATGAACCTTCTATTAAGGAACTCTT
* * *
44316067 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTCGTGTTATGCTATAGGTCGCAATACACACTGTG
1 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATGCACACTGTG
* *
44316132 CAATGCCATGATGGAGCTTAATACTAAACTCAACTTCATG-TCTGGTGGTAAACCAGTCAACTTT
66 CAATACCATGATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
* * * *
44316196 TTAGGAAACACGTTAGGAGAAACCTTAACCGTGAGAATATCCTGAACTCTCAAGTCCTTACTAAC
131 TCAGGAAACACGTTAGGAGAATCCTTAACCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
*
44316261 TGAATTTATCATATAAGCTAAGGAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
196 TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
* * *
44316326 TTGAAACTACATTGGACATTAATCCTGGTCTTTCACCAACAACAAAAATTTCCAACCCATCACTA
261 TTGAAACCACATTGGACATTAATCCCGATCTTTCACCAACAACAAAAATTTCCAACCCATCACTA
*
44316391 TTCCTCAAAGTAATTTGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACTAAACAAGTCCAT
326 TTCCTCAAAGTAATTCGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACTAAACAAGTCCAT
*
44316456 ACCAAGAATCACATAAAGCCGTAGAACAAAAA-TCCATACGATCAATAGAGAAAATGTGCCCTTG
391 ACCAAGAATCACATAAAACCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCTTG
44316520 AACCATAATGGGACATCTACAATAAATTTTACTCACTTCCACACTATCACCAAAGGAACTAATAA
456 AACCATAATGGGACATCTACAATAAATTTTACTCACTTCCACACTATCACCAAAGGAACTAATAA
* *
44316585 CATATTTGCATCGTACCATCCTTCTTCTTCGCAAACAAAATTGGTGCACCCTACAGAGATACACT
521 CATATTTGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGAGATACACT
44316650 CGGTCGAATGAACCTTCTATTAAGGAACTCTT
586 CGGTCGAATGAACCTTCTATTAAGGAACTCTT
* * *
44316682 GAAACTAAATCTTTAACTCCTTGAGCTCTTCTAGTGTCATGCTATAGGTCGCAATACACACTGTG
1 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATGCACACTGTG
* * ** ** ** ***
44316747 CAATACCATGATGGAGCTTAATACTAAACTCAAC-T-ATCTACAATAAATTTTACTCACTTCCAC
66 CAATACCATGATGGAGCTTAATACTAAACTCAACTTCATGTTC--T-GGTGGTAAAC-CAGACA-
** ** * ** ** *** * *
44316810 ACTATCACCAAAGGCACTAATAACATATTTCCATCGTACCATCCTTCTTCTTCACAAACAAAACT
126 ACT-T-TTC--AGG-----A-AACA-CGTT--A--GGAGAATCCTT-AAC--C-GTGAGAATA-T
** *
44316875 GGTGCACCCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAA
171 CCTG-A----AC-TCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAA
* ** *** * * ** *
44316940 CCTTTTCCTATCATC-CCAAAG-GGAC-TA-AT--AA-CATATCAG-CATCGTACCAT-CC-TTC
230 CCTTTTCCTATCATCTTCTCAGCTTTCATAGTTGAAACCACATTGGACAT--TA--ATCCCGATC
* * * * * * *
44316995 TTCTTCA-C-A-AACAAAACTGGTGC-ACCC-TACAGCTTAAATCCT--TACTAACT-GAATTT-
291 -T-TTCACCAACAACAAAAAT-TTCCAACCCAT-CA-C-T-ATTCCTCAAAGTAATTCG--TTTC
* * * * * * *** *
44317051 ATCAT-ATAAGCTA----AG--TAAGGTTCAC-AACCTTTTCCTATCATCCCAAAGGGACTAATA
347 ATC-TCAAAATCTACCTTAGCCTTATGCTCACTAAACAAGTCC-AT-A--CC-AA--G---AATC
** * * * * * *** * * *
44317108 ACATATCAGCATCGTACCATCCTTCTTC-TTC-A-CAA-ACA-AAACTGGTGCACCCTACAGCTT
401 ACATAAAACCGTAGAACAAAAATTC--CATACGATCAATAGAGAAAAT-GTG----C--C--CTT
* ** * ** * * **
44317168 AAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCAC-AACCTT-TTC-CTATCAT
455 GAA-CC--A-TAA-TG---GGA-CATCT-A-C-AA-TAAATTTTACTCA-CTTCCACACTATCA-
* **
44317230 CCCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCA
505 -CCAAAGGAACTAATAACATATTTGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCA
** * ** * ** * **
44317295 CCCTACAG-CTTA-AATCCTTACTAACTGAATTTATCATATAAGCTAAGTAA-GGTT
569 CCCTACAGAGATACACTCGGT-CGAA-TGAACCT-TC-TAT----TAAGGAACTCTT
* ** * * ** * ** * * * **
44317349 CACAACCT-TTTC-CTATCATCCCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTC
1 GA-AA-CTAAATCTTTAAC-T-CC-TTGAG-C---T--C-T-TTTG-GT-GT--CATGC-TATAG
* * * * * * * * *
44317412 TTCACAA-ACAAAACTGGTGC---ACCCT-A--CAGCTTAAATCCTTACTAACTGAATTTATCAT
48 GTCGCAATGC-ACACT-GTGCAATACCATGATGGAGCTT-AATAC-TA--AACTCAA-CT-TCAT
* * * *** * * ** * * *
44317470 ATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCCCAAAGGGACTAATAACATATCAGCATC
105 GT--TCT-GGT--GG-T-A-AACC--AGAC-AACTTTTC--A-GGA--AA-CACGT-T-AGGA--
** *** * * ** *
44317535 GTACCATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGCTTAAATCCTTACTAACTGAA
149 G-A--ATCCTT-AAC--C-GTGAGAATA-TCCTG-A----AC-TCTTAAATCCTTACTAACTGAA
* ** *** *
44317600 TTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATC-CCAAAG-GGAC-TA-AT--
200 TTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAGTTGA
* ** * * * *
44317659 AA-CATATCAG-CATCGTACCAT-CC-TTCTTCTTCA-C-A-AACAAAACTGGTGC-ACCC-TAC
265 AACCACATTGGACAT--TA--ATCCCGATC-T-TTCACCAACAACAAAAAT-TTCCAACCCAT-C
* * * * * * * * *
44317715 AGCTTAAATCCT--TACTAACT-GAATTT-ATCAT-ATAAGCTA----AG--TAAGGTTCAC-AA
322 A-C-T-ATTCCTCAAAGTAATTCG--TTTCATC-TCAAAATCTACCTTAGCCTTATGCTCACTAA
* *** * ** * * * * * *** *
44317768 CCTTTTCCTATCATCCCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTC-TTC-A-
381 ACAAGTCC-AT-A--CC-AA--G---AATCACATAAAACCGTAGAACAAAAATTC--CATACGAT
* * * ** *
44317830 CAA-ACA-AAACTGGTGCACCCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAA
434 CAATAGAGAAAAT-GTG----C--C--CTTGAA-CC--A-TAA-TG---GGA-CATCT-A-C-AA
** * * ** * **
44317893 GTAAGGTTCAC-AACCTT-TTC-CTATCATCCCAAAGGGACTAATAACATATCAGCATCGTACCA
478 -TAAATTTTACTCA-CTTCCACACTATCA--CCAAAGGAACTAATAACATATTTGCATCGTACCA
** * ** * **
44317955 TCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAG-CTTA-AATCCTTACTAACTGAATTTA
539 TCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGAGATACACTCGGT-CGAA-TGAACCT-
* **
44318018 TCATATAAGCTAAGTAA-GGTT
601 TC-TAT----TAAGGAACTCTT
* ** * * ** * ** * * * **
44318039 CACAACCT-TTTC-CTATCATCCCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTC
1 GA-AA-CTAAATCTTTAAC-T-CC-TTGAG-C---T--C-T-TTTG-GT-GT--CATGC-TATAG
* * * * * * * * *
44318102 TTCACAA-ACAAAACTGGTGC---ACCCT-A--CAGCTTAAATCCTTACTAACTGAATTTATCAT
48 GTCGCAATGC-ACACT-GTGCAATACCATGATGGAGCTT-AATAC-TA--AACTCAA-CT-TCAT
* * * *** * * ** * * *
44318160 ATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCCCAAAGGGACTAATAACATATCAGCATC
105 GT--TCT-GGT--GG-T-A-AACC--AGAC-AACTTTTC--A-GGA--AA-CACGT-T-AGGA--
** *** * * ** *
44318225 GTACCATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGCTTAAATCCTTACTAACTGAA
149 G-A--ATCCTT-AAC--C-GTGAGAATA-TCCTG-A----AC-TCTTAAATCCTTACTAACTGAA
* ** *** *
44318290 TTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATC-CCAAAG-GGAC-TA-AT--
200 TTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAGTTGA
* ** * * * *
44318349 AA-CATATCAG-CATCGTACCAT-CC-TTCTTCTTCA-C-A-AACAAAACTGGTGC-ACCC-TAC
265 AACCACATTGGACAT--TA--ATCCCGATC-T-TTCACCAACAACAAAAAT-TTCCAACCCAT-C
* * * * * * **
44318405 AGCTTAAATCCTTACTAACTGAATT--TATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTA
322 A-C-T-ATTCC-T-CAAAGT-AATTCGTTTCATCT---C-AA--AA---T--CTACCTTAGCC--
* * ** ** * * * ** *
44318468 TTTTCTTCTCAGCT-TTCATAGTTGAAACC-ACATTGCACATTAATTCAGATCTTTCACCAACAA
368 --TTATGCTCA-CTAAACA-AGTCCATACCAAGAAT-CACA-TAA---A-A-----C-CGTAGAA
* * ***
44318531 CAAAAATTTCCA-ACCCATCACT-------AT-T--CCTT-AA--AGTAATTCGTTTCATCT-C-
417 CAAAAA-TTCCATA-CGATCAATAGAGAAAATGTGCCCTTGAACCA-TAA-T-GGGACATCTACA
* * * * * ** * * ** *
44318580 A-AAA-TCTACCTTAGCCTTATGCACACTCAACCAGTCCATACCAA-GAATCACATAAAAT-CGT
477 ATAAATTTTA-CTCA--C-T-TCCACACT--ATCA--CCAAAGGAACTAATAACAT-ATTTGCAT
* * * *** * * * *
44318641 AGAACAAAAATTC--CTTACGATCAATAGAGAAAAT-GTGC-CCTTGAACCATA-ATGGGACA-T
532 CGTACCATCCTTCTTCTT-C-A-CAA-ACA-AAACTGGTGCACCCT--A-CAGAGAT---ACACT
* * * *** *
44318700 C--TAGAAT-AA-ATTTTATTCACATCCACAC-T
586 CGGTCGAATGAACCTTCTATT-A-AGGAACTCTT
* * * * * * ** ** ** * *
44318729 -ATCACCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGG
1 GA-AACTAAA---TCT-TTAAC---TC--C-TTG-AGC-T-CTT-TTGGTGTCATGCTATA--GG
* * * * *
44318793 TGCGCCTTACAGAGATACACTCG-GTCGAATGAACCTTCTATAAAGGAACTCTTGAA-ACTAAAT
49 T-CG-C--A-A-TG-CACACT-GTG-C-AAT--A-C--C-ATGATGG-A-GCTT-AATACTAAA-
* * * * ** ** * ** * * * *
44318856 CTTTAACTCCTTGAGCTCTTTTGGT-GTCCTG-CTATAGC-TCGCAATG-CACAC-TGT-GCAGT
94 C-TCAACTTCAT--GTTCTGGTGGTAAACCAGAC-A-A-CTTTTC-AGGAAACACGT-TAGGAGA
* * * ** * * ** * ** *
44318915 A-CCATGA-TG-GAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT-
151 ATCCTTAACCGTGAGAAT-ATCCTGAACT---CTT-AAATCCT--TACT-AA-CTG--AA-TTTA
* * * * ** ** * * * * * *
44318976 TCAGGA-AA-C-ACGTTAGG---AGAATCCTTAACCGTGAGAATATCCTGAACTCTCA-AATCCT
204 TCA-TATAAGCTAAGTAAGGTTCACAA-CCTTTTCC-T-ATCATCTTCTCAGCTTTCATAGT--T
* * * * ** *** ** * **
44319034 TACTAACTGA-ATT-TATCATATAAGCTAAGTAAGGTTCA-CAACCTTTTCCTATCATCTTCTC-
263 GA--AAC-CACATTGGA-CAT-TAATC-CCG-ATCTTTCACCAA-C---AACAAAAAT-TTC-CA
* ** * * * * * *
44319095 AGCTTTCA-TAGTTGAAACCACATTGGACATTAATCCCGGTCTTTCACCAACAACAAAAAT-TTC
315 ACCCATCACTA-TT----CCTCA----A-AGTAAT-TC-G--TTT---CATC-TC-AAAATCTAC
* * * * ** *
44319158 C-AACCCATCACTATTCCTCAAAGTAATTAGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCA
361 CTTAGCC-T---TA-TGCTC--ACTAA--A----CAAGTC--CA--TACC--A-----A-G---A
* * * * *
44319222 CTCAACCAATCAATACC-AAGAATCACATAAAATCGTAGAACAAAAATTCCATACGATCAATAGA
398 ATC-A-C-AT-AAAACCGTAG-A--ACA-AAAAT--T----C---CA-T--AC--GATCAATAGA
* *
44319286 GAAAATGTGCCCTTGAACCATAATGGGAGATCTACAATAAATTTTATTCACTTCCACACTATCAC
441 GAAAATGTGCCCTTGAACCATAATGGGACATCTACAATAAATTTTACTCACTTCCACACTATCAC
* *
44319351 CAAAGGAACTAATAACATATCTGCATCGTACCATCCTTTTTCTTCACAAACAAAACTGGTGCACC
506 CAAAGGAACTAATAACATATTTGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCACC
* *
44319416 TTACAGTGATACACTCGGTCGAATGAACCTTCTATTAAGGAACTCTT
571 CTACAGAGATACACTCGGTCGAATGAACCTTCTATTAAGGAACTCTT
*
44319463 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAAGTCGCAATGCACACTGTG
1 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATGCACACTGTG
* * *
44319528 CAATACCCTCATGGAGCTTAATACAAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
66 CAATACCATGATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
*
44319593 TCAGGAAACACGTTAGGAGAATCCTTAATCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
131 TCAGGAAACACGTTAGGAGAATCCTTAACCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
44319658 TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
196 TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
*
44319723 TTGAAACCACATTGGACATTAATCCCGGTCTTTCACCAACAACAAAAATTTCCAACCCATCACTA
261 TTGAAACCACATTGGACATTAATCCCGATCTTTCACCAACAACAAAAATTTCCAACCCATCACTA
44319788 TTCCTCAAAGTAATTCGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACTAAACAAGTCCAT
326 TTCCTCAAAGTAATTCGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACTAAACAAGTCCAT
44319853 ACCAAGAATCACATAAAACCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCTTG
391 ACCAAGAATCACATAAAACCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCTTG
*
44319918 AACCATAATGGGACATCTACAATAAATTTTATTCACTTCCACACTATCACCAAAGGAACTAATAA
456 AACCATAATGGGACATCTACAATAAATTTTACTCACTTCCACACTATCACCAAAGGAACTAATAA
*
44319983 CATATCTGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGAGATACACT
521 CATATTTGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGAGATACACT
44320048 CGGTCGAATGAACCTTCTATTAAGGAACTCTT
586 CGGTCGAATGAACCTTCTATTAAGGAACTCTT
44320080 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATGCACACTGTG
1 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATGCACACTGTG
44320145 CAATACCATGATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
66 CAATACCATGATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
*
44320210 TCAGGAAACACGTTAGGAGAATCCTTAACCGTGAGAATATCCTGAACTCTCAAATCCTTACTAAC
131 TCAGGAAACACGTTAGGAGAATCCTTAACCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
44320275 TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
196 TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
*
44320340 TTGAAACCACATTGGACATTAAT-CCTAGTCTTTCACCAACAACAAAAATTTCCAACCCATCACT
261 TTGAAACCACATTGGACATTAATCCCGA-TCTTTCACCAACAACAAAAATTTCCAACCCATCACT
* * *
44320404 ATTCCTCAAAGTAATTAGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACTCAACCAA-TCA
325 ATTCCTCAAAGTAATTCGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACT-AAACAAGTCC
*
44320468 ATACCAAGAATCACATAAAATCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCT
389 ATACCAAGAATCACATAAAACCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCT
* *
44320533 TGAACCATAATGGGAGATCTACAATAAATTTTATTCACTTCCACACTATCACCAAAGGAACTAAT
454 TGAACCATAATGGGACATCTACAATAAATTTTACTCACTTCCACACTATCACCAAAGGAACTAAT
** * * *
44320598 AACATATCAGCATCGTACCATCCTTTTTCTTCACAAACAAAACTGGTGCACCTTACAGTGATACA
519 AACATATTTGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGAGATACA
44320663 CTCGGTCGAATGAACCTTCTATTAAGGAACTCTT
584 CTCGGTCGAATGAACCTTCTATTAAGGAACTCTT
* *
44320697 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAAGTCGCAATGCATACTGTG
1 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATGCACACTGTG
* *
44320762 CAATACCCTCATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
66 CAATACCATGATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
*
44320827 TCAGGAAACACGTTAGGAGAATCCTTAATCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
131 TCAGGAAACACGTTAGGAGAATCCTTAACCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
*
44320892 TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCACCTTCTCAGCTTTCATAG
196 TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
* *
44320957 TTGAAACTACATTGGACATTAATCCTGATCTTTCACCAACAACAAAAATTTCCAACCCATCACTA
261 TTGAAACCACATTGGACATTAATCCCGATCTTTCACCAACAACAAAAATTTCCAACCCATCACTA
44321022 TTCCTCAAAGTAATTCGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACTAAACAAGTCCAT
326 TTCCTCAAAGTAATTCGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACTAAACAAGTCCAT
44321087 ACCAAGAATCACATAAAACCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCTTG
391 ACCAAGAATCACATAAAACCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCTTG
*
44321152 AACCATAATGGGACATCTACAATAAATTTTACTCACTTCCACACTATCACCAAAGGAACGAATAA
456 AACCATAATGGGACATCTACAATAAATTTTACTCACTTCCACACTATCACCAAAGGAACTAATAA
*
44321217 CATATTTGCATCGTAACATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGAGATACACT
521 CATATTTGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGAGATACACT
*
44321282 CGGTCGAATGTA-CTCTCTATTAAGGAACTCTT
586 CGGTCGAATGAACCT-TCTATTAAGGAACTCTT
*
44321314 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATACACACTGTG
1 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATGCACACTGTG
* * *
44321379 CAATTCCATGATGGAGCTTAATACTGAACTCAACTTCATATTCTGGTGGTAAACCAGACAACTTT
66 CAATACCATGATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
44321444 TCAGGAAACACGTTAGGAGAATCCTTAACCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
131 TCAGGAAACACGTTAGGAGAATCCTTAACCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
44321509 TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
196 TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
* *
44321574 TTGAAACCACATTGCACATTAATCCAGATCTTTCACCAACAACAAAAATTTCCAACCCATCACTA
261 TTGAAACCACATTGGACATTAATCCCGATCTTTCACCAACAACAAAAATTTCCAACCCATCACTA
* * *
44321639 TTCCTCAAAGTAATTCGTTTCATCTCAAAATATACCTTAGCCTTATGCTCACTCAACCAGTCCAT
326 TTCCTCAAAGTAATTCGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACTAAACAAGTCCAT
*
44321704 ACCAAGAATCACATAAAATCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCTTG
391 ACCAAGAATCACATAAAACCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCTTG
*
44321769 AACCATAATGGGACATCTACAATAAATTTTACTCACTTCCACACTATCACCAAAGGAGCTAATAA
456 AACCATAATGGGACATCTACAATAAATTTTACTCACTTCCACACTATCACCAAAGGAACTAATAA
*
44321834 CATATTTGCATCGTAACATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGAGATACACT
521 CATATTTGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGAGATACACT
*
44321899 CGGTCGAATGAACCCTCTATTAAGGAACTCTT
586 CGGTCGAATGAACCTTCTATTAAGGAACTCTT
*
44321931 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATACACACTGTG
1 GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATGCACACTGTG
* *
44321996 CAATTCCATGATGGAGCTTAATACTGAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
66 CAATACCATGATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
44322061 TCAGGAAACACGTTAGGAGAATCCTTAACCGTGAGAATATCCTGAACTCTTAAATCCTTAC
131 TCAGGAAACACGTTAGGAGAATCCTTAACCGTGAGAATATCCTGAACTCTTAAATCCTTAC
44322122 CACCTTACAG
Statistics
Matches: 6228, Mismatches: 623, Indels: 879
0.81 0.08 0.11
Matches are distributed among these distances:
613 2 0.00
614 2 0.00
615 285 0.05
616 309 0.05
617 2918 0.47
618 11 0.00
619 4 0.00
620 539 0.09
621 3 0.00
622 1 0.00
623 3 0.00
625 1 0.00
628 1 0.00
629 5 0.00
630 2 0.00
631 5 0.00
632 10 0.00
633 9 0.00
634 14 0.00
635 7 0.00
636 3 0.00
637 8 0.00
638 26 0.00
639 28 0.00
640 13 0.00
641 18 0.00
642 20 0.00
643 4 0.00
644 7 0.00
645 65 0.01
647 2 0.00
649 9 0.00
650 2 0.00
651 1 0.00
652 1 0.00
653 7 0.00
654 2 0.00
657 2 0.00
658 4 0.00
659 5 0.00
660 11 0.00
661 13 0.00
662 84 0.01
663 2 0.00
664 8 0.00
665 5 0.00
666 6 0.00
667 6 0.00
668 11 0.00
669 7 0.00
670 2 0.00
671 2 0.00
672 1 0.00
673 7 0.00
674 2 0.00
675 3 0.00
676 5 0.00
677 5 0.00
678 22 0.00
679 9 0.00
680 16 0.00
681 9 0.00
682 31 0.00
683 21 0.00
684 7 0.00
685 7 0.00
686 16 0.00
687 11 0.00
688 15 0.00
689 23 0.00
690 909 0.15
691 18 0.00
692 40 0.01
693 34 0.01
694 37 0.01
695 19 0.00
696 26 0.00
697 42 0.01
698 21 0.00
699 24 0.00
700 21 0.00
701 20 0.00
702 5 0.00
703 5 0.00
704 6 0.00
705 6 0.00
706 8 0.00
707 10 0.00
708 8 0.00
709 7 0.00
710 11 0.00
711 9 0.00
712 9 0.00
713 3 0.00
714 9 0.00
715 4 0.00
716 7 0.00
717 11 0.00
718 8 0.00
719 2 0.00
720 9 0.00
721 4 0.00
722 5 0.00
723 4 0.00
724 5 0.00
725 2 0.00
727 2 0.00
729 1 0.00
730 12 0.00
731 4 0.00
732 2 0.00
733 16 0.00
734 15 0.00
735 22 0.00
736 16 0.00
737 6 0.00
738 4 0.00
739 7 0.00
740 10 0.00
741 5 0.00
742 4 0.00
743 6 0.00
744 3 0.00
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (617 bp):
GAAACTAAATCTTTAACTCCTTGAGCTCTTTTGGTGTCATGCTATAGGTCGCAATGCACACTGTG
CAATACCATGATGGAGCTTAATACTAAACTCAACTTCATGTTCTGGTGGTAAACCAGACAACTTT
TCAGGAAACACGTTAGGAGAATCCTTAACCGTGAGAATATCCTGAACTCTTAAATCCTTACTAAC
TGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTCCTATCATCTTCTCAGCTTTCATAG
TTGAAACCACATTGGACATTAATCCCGATCTTTCACCAACAACAAAAATTTCCAACCCATCACTA
TTCCTCAAAGTAATTCGTTTCATCTCAAAATCTACCTTAGCCTTATGCTCACTAAACAAGTCCAT
ACCAAGAATCACATAAAACCGTAGAACAAAAATTCCATACGATCAATAGAGAAAATGTGCCCTTG
AACCATAATGGGACATCTACAATAAATTTTACTCACTTCCACACTATCACCAAAGGAACTAATAA
CATATTTGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCACCCTACAGAGATACACT
CGGTCGAATGAACCTTCTATTAAGGAACTCTT
Found at i:44317065 original size:138 final size:138
Alignment explanation
Indices: 44316817--44318468 Score: 3268
Period size: 138 Copynumber: 12.0 Consensus size: 138
44316807 CACACTATCA
* ***
44316817 CCAAAGGCACTAATAACATATTTCCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
1 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
44316882 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
66 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
44316947 CTATCATC
131 CTATCATC
44316955 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
1 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
44317020 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
66 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
44317085 CTATCATC
131 CTATCATC
44317093 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
1 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
44317158 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
66 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
44317223 CTATCATC
131 CTATCATC
44317231 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
1 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
44317296 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
66 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
44317361 CTATCATC
131 CTATCATC
44317369 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
1 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
44317434 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
66 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
44317499 CTATCATC
131 CTATCATC
44317507 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
1 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
44317572 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
66 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
44317637 CTATCATC
131 CTATCATC
44317645 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
1 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
44317710 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
66 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
44317775 CTATCATC
131 CTATCATC
44317783 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
1 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
44317848 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
66 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
44317913 CTATCATC
131 CTATCATC
44317921 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
1 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
44317986 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
66 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
44318051 CTATCATC
131 CTATCATC
44318059 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
1 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
44318124 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
66 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
44318189 CTATCATC
131 CTATCATC
44318197 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
1 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
44318262 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
66 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
44318327 CTATCATC
131 CTATCATC
44318335 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
1 CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
44318400 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
66 CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
44318465 CTAT
131 CTAT
44318469 TTTCTTCTCA
Statistics
Matches: 1510, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
138 1510 1.00
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.29
Consensus pattern (138 bp):
CCAAAGGGACTAATAACATATCAGCATCGTACCATCCTTCTTCTTCACAAACAAAACTGGTGCAC
CCTACAGCTTAAATCCTTACTAACTGAATTTATCATATAAGCTAAGTAAGGTTCACAACCTTTTC
CTATCATC
Found at i:44328976 original size:9 final size:9
Alignment explanation
Indices: 44328962--44329042 Score: 65
Period size: 9 Copynumber: 8.6 Consensus size: 9
44328952 TTTTTTTCTA
*
44328962 ATAAAAATC
1 ATAAAAATT
44328971 ATAAAAATT
1 ATAAAAATT
44328980 ATAAAAACTT
1 ATAAAAA-TT
44328990 ATAAAAACTT
1 ATAAAAA-TT
44329000 ATAAATAAATT
1 AT-AA-AAATT
44329011 -TAATAAATT
1 ATAA-AAATT
* *
44329020 CTAAATATT
1 ATAAAAATT
* *
44329029 TTAAAAAAT
1 ATAAAAATT
44329038 ATAAA
1 ATAAA
44329043 CTATAAAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
9 37 0.60
10 18 0.29
11 4 0.06
12 3 0.05
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (9 bp):
ATAAAAATT
Found at i:44328985 original size:8 final size:10
Alignment explanation
Indices: 44328962--44329004 Score: 63
Period size: 10 Copynumber: 4.5 Consensus size: 10
44328952 TTTTTTTCTA
*
44328962 ATAAAAA-TC
1 ATAAAAACTT
44328971 ATAAAAA-TT
1 ATAAAAACTT
44328980 ATAAAAACTT
1 ATAAAAACTT
44328990 ATAAAAACTT
1 ATAAAAACTT
44329000 ATAAA
1 ATAAA
44329005 TAAATTTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
9 15 0.47
10 17 0.53
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (10 bp):
ATAAAAACTT
Found at i:44328985 original size:18 final size:20
Alignment explanation
Indices: 44328962--44329004 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
44328952 TTTTTTTCTA
44328962 ATAAAAA-TCATAAAAA-TT
1 ATAAAAACTCATAAAAACTT
*
44328980 ATAAAAACTTATAAAAACTT
1 ATAAAAACTCATAAAAACTT
44329000 ATAAA
1 ATAAA
44329005 TAAATTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.32
19 8 0.36
20 7 0.32
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (20 bp):
ATAAAAACTCATAAAAACTT
Found at i:44328986 original size:10 final size:10
Alignment explanation
Indices: 44328964--44329042 Score: 58
Period size: 10 Copynumber: 8.2 Consensus size: 10
44328954 TTTTTCTAAT
*
44328964 AAAAATCAT-
1 AAAAATTATA
44328973 AAAAATTATA
1 AAAAATTATA
*
44328983 AAAACTTATA
1 AAAAATTATA
*
44328993 AAAACTTATA
1 AAAAATTATA
44329003 AATAAATT-TA
1 AA-AAATTATA
* *
44329013 ATAAATTCT-
1 AAAAATTATA
* *
44329022 AAATATTTTA
1 AAAAATTATA
44329032 AAAAA-TATA
1 AAAAATTATA
44329041 AA
1 AA
44329043 CTATAAAAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
9 24 0.42
10 29 0.51
11 4 0.07
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAAATTATA
Found at i:44329538 original size:10 final size:10
Alignment explanation
Indices: 44329523--44329598 Score: 86
Period size: 10 Copynumber: 7.9 Consensus size: 10
44329513 AAGTTTATGA
44329523 TTTTTATAAG
1 TTTTTATAAG
44329533 TTTTTATAAG
1 TTTTTATAAG
44329543 TTTTTATAA-
1 TTTTTATAAG
*
44329552 TATTTATAAG
1 TTTTTATAAG
*
44329562 TTTTTATGA-
1 TTTTTATAAG
44329571 TTTTTATAA-
1 TTTTTATAAG
**
44329580 TAGTTATAAG
1 TTTTTATAAG
*
44329590 TTTATATAA
1 TTTTTATAA
44329599 ATATATTAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
9 23 0.42
10 32 0.58
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (10 bp):
TTTTTATAAG
Found at i:44329546 original size:19 final size:18
Alignment explanation
Indices: 44329511--44329598 Score: 72
Period size: 19 Copynumber: 4.7 Consensus size: 18
44329501 TTTAAAAAAA
*
44329511 ATAAG-TTTATGATTTTT
1 ATAAGTTTTATAATTTTT
44329528 ATAAGTTTTTATAAGTTTTT
1 ATAAG-TTTTATAA-TTTTT
44329548 ATAA-TATTTATAAGTTTTT
1 ATAAGT-TTTATAA-TTTTT
* * **
44329567 ATGATTTTTATAATAGTT
1 ATAAGTTTTATAATTTTT
44329585 ATAAGTTTATATAA
1 ATAAGTTT-TATAA
44329599 ATATATTAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
17 5 0.08
18 10 0.17
19 34 0.58
20 10 0.17
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (18 bp):
ATAAGTTTTATAATTTTT
Found at i:44329667 original size:10 final size:9
Alignment explanation
Indices: 44329653--44329731 Score: 68
Period size: 10 Copynumber: 8.1 Consensus size: 9
44329643 TAGAAAAAAA
44329653 TTATATTTT
1 TTATATTTT
*
44329662 ATTATAAATTT
1 -TTAT-ATTTT
44329673 TTATATTTT
1 TTATATTTT
*
44329682 ATATAAATTTT
1 -T-TATATTTT
*
44329693 TAATATTTT
1 TTATATTTT
44329702 TTATAATTTT
1 TTAT-ATTTT
44329712 TTAATATTTT
1 TT-ATATTTT
*
44329722 TAATATTTT
1 TTATATTTT
44329731 T
1 T
44329732 ATTATAATTT
Statistics
Matches: 57, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
9 21 0.37
10 23 0.40
11 13 0.23
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTATATTTT
Found at i:44329678 original size:20 final size:21
Alignment explanation
Indices: 44329655--44329721 Score: 104
Period size: 20 Copynumber: 3.3 Consensus size: 21
44329645 GAAAAAAATT
44329655 ATATTTTATTATAAATTTTT-
1 ATATTTTATTATAAATTTTTA
44329675 ATATTTTA-TATAAATTTTTA
1 ATATTTTATTATAAATTTTTA
*
44329695 ATATTTT-TTATAATTTTTTA
1 ATATTTTATTATAAATTTTTA
44329715 ATATTTT
1 ATATTTT
44329722 TAATATTTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
19 11 0.25
20 33 0.75
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
ATATTTTATTATAAATTTTTA
Found at i:44329688 original size:19 final size:19
Alignment explanation
Indices: 44329653--44329733 Score: 94
Period size: 20 Copynumber: 4.2 Consensus size: 19
44329643 TAGAAAAAAA
44329653 TTATATTTTATTATAAATTT
1 TTATATTTTA-TATAAATTT
44329673 TTATATTTTATATAAATTT
1 TTATATTTTATATAAATTT
* *
44329692 TTAATATTTTTTATAATTTT
1 TT-ATATTTTATATAAATTT
*
44329712 TTAATATTTT-TA-ATATTT
1 TT-ATATTTTATATAAATTT
44329730 TTAT
1 TTAT
44329734 TATAATTTAT
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
17 2 0.04
18 6 0.11
19 13 0.23
20 35 0.62
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATATTTTATATAAATTT
Found at i:44329700 original size:9 final size:9
Alignment explanation
Indices: 44329669--44329732 Score: 67
Period size: 9 Copynumber: 6.8 Consensus size: 9
44329659 TTTATTATAA
44329669 ATTTTT-AT
1 ATTTTTAAT
*
44329677 ATTTTATATAA
1 ATTTT-TA-AT
44329688 ATTTTTAAT
1 ATTTTTAAT
*
44329697 ATTTTTTAT
1 ATTTTTAAT
44329706 AATTTTTTAAT
1 -A-TTTTTAAT
44329717 ATTTTTAAT
1 ATTTTTAAT
44329726 ATTTTTA
1 ATTTTTA
44329733 TTATAATTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
8 5 0.11
9 25 0.53
10 4 0.09
11 13 0.28
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:44329703 original size:29 final size:29
Alignment explanation
Indices: 44329670--44329741 Score: 94
Period size: 29 Copynumber: 2.4 Consensus size: 29
44329660 TTATTATAAA
44329670 TTTTTAT-ATTTTATATAA-ATTTTTAATAT
1 TTTTTATAATTTT-T-TAATATTTTTAATAT
44329699 TTTTTATAATTTTTTAATATTTTTAATATT
1 TTTTTATAATTTTTTAATATTTTTAATA-T
44329729 TTTATTATAATTT
1 TTT-TTATAATTT
44329742 ATTATGATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
28 3 0.08
29 18 0.46
30 9 0.23
31 9 0.23
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (29 bp):
TTTTTATAATTTTTTAATATTTTTAATAT
Found at i:44329755 original size:13 final size:11
Alignment explanation
Indices: 44329652--44329757 Score: 63
Period size: 10 Copynumber: 10.3 Consensus size: 11
44329642 TTAGAAAAAA
44329652 ATTAT-ATTTT
1 ATTATAATTTT
*
44329662 ATTATAAATTT
1 ATTATAATTTT
44329673 -TTAT-ATTTT
1 ATTATAATTTT
*
44329682 A-TATAAATTT
1 ATTATAATTTT
44329692 -TTA-ATATTTT
1 ATTATA-ATTTT
44329702 -TTATAATTTT
1 ATTATAATTTT
44329712 -TTA-ATATTTT
1 ATTATA-ATTTT
* *
44329722 -TAATATTTTT
1 ATTATAATTTT
44329732 ATTATAA-TTT
1 ATTATAATTTT
44329742 ATTATGATATTTT
1 ATTAT-A-ATTTT
44329755 ATT
1 ATT
44329758 GGAAAAATGA
Statistics
Matches: 76, Mismatches: 8, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
9 9 0.12
10 49 0.64
11 11 0.14
12 1 0.01
13 6 0.08
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (11 bp):
ATTATAATTTT
Found at i:44345045 original size:47 final size:47
Alignment explanation
Indices: 44344976--44345069 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
44344966 NNNNNNNNNN
* *
44344976 AAGGCCTAATGGCCGACGTGATGAATGTGAGAGTGTATATATGTGAT
1 AAGGCCTAATGGCCGACGTGATGAATGTGAAAGCGTATATATGTGAT
* *
44345023 AAGGCCTAATGGTCGATGTGATGAATGTGAAAGCGTATATATGTGAT
1 AAGGCCTAATGGCCGACGTGATGAATGTGAAAGCGTATATATGTGAT
44345070 GTGAAAGCGT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.29
Consensus pattern (47 bp):
AAGGCCTAATGGCCGACGTGATGAATGTGAAAGCGTATATATGTGAT
Found at i:44345073 original size:21 final size:21
Alignment explanation
Indices: 44345047--44345090 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
44345037 GATGTGATGA
44345047 ATGTGAAAGCGTATATATGTG
1 ATGTGAAAGCGTATATATGTG
44345068 ATGTGAAAGCGTATATATGTG
1 ATGTGAAAGCGTATATATGTG
44345089 AT
1 AT
44345091 AAGGCCTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.05, G:0.27, T:0.34
Consensus pattern (21 bp):
ATGTGAAAGCGTATATATGTG
Found at i:44345109 original size:68 final size:68
Alignment explanation
Indices: 44345000--44345137 Score: 249
Period size: 68 Copynumber: 2.0 Consensus size: 68
44344990 GACGTGATGA
* * *
44345000 ATGTGAGAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGCGTATATAT
1 ATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATAT
44345065 GTG
66 GTG
44345068 ATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATAT
1 ATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATAT
44345133 GTG
66 GTG
44345136 AT
1 AT
44345138 AAGGCCTAAT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (68 bp):
ATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATAT
GTG
Found at i:44345122 original size:47 final size:47
Alignment explanation
Indices: 44345068--44345160 Score: 186
Period size: 47 Copynumber: 2.0 Consensus size: 47
44345058 TATATATGTG
44345068 ATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
44345115 ATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 ATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
44345161 NNNNNNNNNN
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:44351774 original size:23 final size:23
Alignment explanation
Indices: 44351746--44351797 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
44351736 AAAAACTATA
44351746 TAATAAAGTATAAAATCACATTT
1 TAATAAAGTATAAAATCACATTT
** *
44351769 TAATAATTTCTAAAATCACATTT
1 TAATAAAGTATAAAATCACATTT
44351792 TAATAA
1 TAATAA
44351798 TTTCTATCTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (23 bp):
TAATAAAGTATAAAATCACATTT
Found at i:44351798 original size:23 final size:23
Alignment explanation
Indices: 44351756--44351803 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
44351746 TAATAAAGTA
44351756 TAAAATCACATTTTAATAATTTC
1 TAAAATCACATTTTAATAATTTC
44351779 TAAAATCACATTTTAATAATTTC
1 TAAAATCACATTTTAATAATTTC
44351802 TA
1 TA
44351804 TCTCCTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (23 bp):
TAAAATCACATTTTAATAATTTC
Found at i:44360674 original size:40 final size:40
Alignment explanation
Indices: 44360574--44360838 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
44360564 GCTCCTCGTT
* * * *
44360574 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
44360614 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
44360653 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
44360693 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
44360733 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
44360773 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
44360814 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
44360839 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:44360798 original size:80 final size:80
Alignment explanation
Indices: 44360541--44360838 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
44360531 AAATCACGTA
* ** * * *
44360541 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
44360603 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
44360619 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
44360682 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
44360699 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
44360763 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
44360779 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
44360839 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:44360847 original size:41 final size:41
Alignment explanation
Indices: 44360770--44360847 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
44360760 TTTGTATCTC
* * *
44360770 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
44360811 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
44360848 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:44364297 original size:90 final size:90
Alignment explanation
Indices: 44364144--44364323 Score: 324
Period size: 90 Copynumber: 2.0 Consensus size: 90
44364134 TGTAACGACC
*
44364144 CGATAGTCAGGATGTCAAATAGCGAGATTCGTGACTCCATTTCCATAAAATTAACCTGTAAATAT
1 CGATAGCCAGGATGTCAAATAGCGAGATTCGTGACTCCATTTCCATAAAATTAACCTGTAAATAT
*
44364209 TTTTATTTAATATTTACAAGGTTAG
66 TTTTATTTAATATTGACAAGGTTAG
*
44364234 CGATAGCCAGGATGTCAAATAGTGAGATTCGTGACTCCATTTCCATAAAATTAACCTGTAAATAT
1 CGATAGCCAGGATGTCAAATAGCGAGATTCGTGACTCCATTTCCATAAAATTAACCTGTAAATAT
*
44364299 TTTTATTTAATATTGACGAGGTTAG
66 TTTTATTTAATATTGACAAGGTTAG
44364324 TTTAGCAGTG
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
90 86 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (90 bp):
CGATAGCCAGGATGTCAAATAGCGAGATTCGTGACTCCATTTCCATAAAATTAACCTGTAAATAT
TTTTATTTAATATTGACAAGGTTAG
Found at i:44366729 original size:54 final size:54
Alignment explanation
Indices: 44366652--44366769 Score: 139
Period size: 54 Copynumber: 2.2 Consensus size: 54
44366642 TAAGACATGG
* * *
44366652 CCATGTGGCCCAAGTTAGAGAGTTACACAGAC-AGAGACACGGGTTGGGACACGA
1 CCATGTGTCTCAAGTCAGAGAGTTACACAGACAAG-GACACGGGTTGGGACACGA
* * * * * *
44366706 CCGTGTGTCTCAAGTCAGTGAGTTACACGGGCAAGGACATGGGTTGGGACACGG
1 CCATGTGTCTCAAGTCAGAGAGTTACACAGACAAGGACACGGGTTGGGACACGA
44366760 CCATGTGTCT
1 CCATGTGTCT
44366770 TGATTTCGAA
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 51 0.96
55 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.33, T:0.19
Consensus pattern (54 bp):
CCATGTGTCTCAAGTCAGAGAGTTACACAGACAAGGACACGGGTTGGGACACGA
Found at i:44372300 original size:14 final size:14
Alignment explanation
Indices: 44372272--44372317 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
44372262 ACAAATATTC
*
44372272 AATATCATATAACAT
1 AATA-CATATCACAT
44372287 AATACATATCACAT
1 AATACATATCACAT
44372301 -ATCACATATCA-AT
1 AAT-ACATATCACAT
44372314 AATA
1 AATA
44372318 TCACACTCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
13 5 0.18
14 19 0.68
15 4 0.14
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.30
Consensus pattern (14 bp):
AATACATATCACAT
Found at i:44373545 original size:31 final size:31
Alignment explanation
Indices: 44373483--44373554 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
44373473 ACGTGCTTCC
* * * *
44373483 TGTCCTGATGGACTATCTGTTCTGTGCTTAT
1 TGTCCTAACGGACTATCTATTATGTGCTTAT
*
44373514 TGTCCTAACGGACTATCTATTATGTGTTTAT
1 TGTCCTAACGGACTATCTATTATGTGCTTAT
*
44373545 TGTCCCAACG
1 TGTCCTAACG
44373555 AACTTTGTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.18, C:0.21, G:0.19, T:0.42
Consensus pattern (31 bp):
TGTCCTAACGGACTATCTATTATGTGCTTAT
Found at i:44374197 original size:16 final size:16
Alignment explanation
Indices: 44374176--44374206 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
44374166 ACACTCTTTT
44374176 CAATAGGGATCAAACC
1 CAATAGGGATCAAACC
44374192 CAATAGGGATCAAAC
1 CAATAGGGATCAAAC
44374207 TAGCCATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.23, G:0.19, T:0.13
Consensus pattern (16 bp):
CAATAGGGATCAAACC
Found at i:44383532 original size:28 final size:29
Alignment explanation
Indices: 44383501--44383562 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 29
44383491 ATATAGGCAC
**
44383501 GAAGGTTTCCTTT-ATGAAGATTTCCACA
1 GAAGGTTTCCTTTGACAAAGATTTCCACA
*
44383529 GAAGCTTTCCTTTGACAAAGATTTCCACA
1 GAAGGTTTCCTTTGACAAAGATTTCCACA
44383558 -AAGGT
1 GAAGGT
44383563 GTTTCGTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 16 0.55
29 13 0.45
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (29 bp):
GAAGGTTTCCTTTGACAAAGATTTCCACA
Found at i:44383766 original size:60 final size:60
Alignment explanation
Indices: 44383709--44383892 Score: 203
Period size: 60 Copynumber: 3.1 Consensus size: 60
44383699 AAGGGCATTC
* * *
44383709 TTTACATTCAGTACTTGCCACAAAGGCTTTCCTATCCA-AATTTTTGCTACAAAGGCATCT
1 TTTACATTCAGTACTCGCCACAAAGGCTTTCCTATCCAGAATTTTT-CCACAAAGGCATCA
* ** * *
44383769 TTTACATTCAGTACTCACCACAAATGG-TTTTATGTCTAGAATTTTTCCACAAAGGCATCA
1 TTTACATTCAGTACTCGCCACAAA-GGCTTTCCTATCCAGAATTTTTCCACAAAGGCATCA
* * * * *
44383829 TTTATATTTAGCT-CTCGCCACAAAGGCTTTCCTATCCAGAGTTTTTCCATAAAGGCATCC
1 TTTACATTCAG-TACTCGCCACAAAGGCTTTCCTATCCAGAATTTTTCCACAAAGGCATCA
44383889 TTTA
1 TTTA
44383893 ACTAGTGTAT
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
59 2 0.02
60 90 0.88
61 10 0.10
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (60 bp):
TTTACATTCAGTACTCGCCACAAAGGCTTTCCTATCCAGAATTTTTCCACAAAGGCATCA
Found at i:44390540 original size:13 final size:13
Alignment explanation
Indices: 44390524--44390550 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
44390514 TTAAAAAACC
44390524 ATAAAATTTATAA
1 ATAAAATTTATAA
44390537 ATAAAATTTATAA
1 ATAAAATTTATAA
44390550 A
1 A
44390551 AATTTTAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAAAATTTATAA
Found at i:44390577 original size:17 final size:18
Alignment explanation
Indices: 44390537--44390579 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
44390527 AAATTTATAA
*
44390537 ATAAAATTTATAAAAATT
1 ATAAAAGTTATAAAAATT
*
44390555 -TTAAAGTTAT-AAAATT
1 ATAAAAGTTATAAAAATT
44390571 ATAAAAGTT
1 ATAAAAGTT
44390580 TTATTAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (18 bp):
ATAAAAGTTATAAAAATT
Found at i:44391109 original size:6 final size:6
Alignment explanation
Indices: 44391100--44391128 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
44391090 GAAAGGAAGG
44391100 GGAGAT GGAGAT GGAGAT GGAGAT GGAGA
1 GGAGAT GGAGAT GGAGAT GGAGAT GGAGA
44391129 AAAGGAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.52, T:0.14
Consensus pattern (6 bp):
GGAGAT
Found at i:44396671 original size:25 final size:25
Alignment explanation
Indices: 44396642--44396694 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
44396632 TCATTCATAT
*
44396642 ATAACTAGAAACATTATTAATCACA
1 ATAACTAGAAACATCATTAATCACA
44396667 ATAACTAGAAACATCATTAATCACA
1 ATAACTAGAAACATCATTAATCACA
44396692 ATA
1 ATA
44396695 CAATGAATAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.53, C:0.17, G:0.04, T:0.26
Consensus pattern (25 bp):
ATAACTAGAAACATCATTAATCACA
Found at i:44399890 original size:53 final size:53
Alignment explanation
Indices: 44399816--44399964 Score: 244
Period size: 53 Copynumber: 2.8 Consensus size: 53
44399806 ATAATCTTTG
* * *
44399816 TCAATGCTAGAAAAGACGAAGGTGATGAAATAAAAAGTAATGCAGAATGTTTC
1 TCAATGCTAGAGAAGACGAAGGTGATGAAATACAAAGTAATGCAGAATATTTC
* * *
44399869 TCAATTCTAGAGAAGATGAAGGTGATGAAATACAAAGTAATGCAGAATATTTG
1 TCAATGCTAGAGAAGACGAAGGTGATGAAATACAAAGTAATGCAGAATATTTC
44399922 TCAATGCTAGAGAAGACGAAGGTGATGAAATACAAAGTAATGC
1 TCAATGCTAGAGAAGACGAAGGTGATGAAATACAAAGTAATGC
44399965 TCTTCCACAT
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 88 1.00
ACGTcount: A:0.44, C:0.09, G:0.23, T:0.23
Consensus pattern (53 bp):
TCAATGCTAGAGAAGACGAAGGTGATGAAATACAAAGTAATGCAGAATATTTC
Found at i:44421949 original size:104 final size:104
Alignment explanation
Indices: 44421764--44421971 Score: 380
Period size: 104 Copynumber: 2.0 Consensus size: 104
44421754 ATATCCTTAA
* * * *
44421764 GTACTTGTGAAGGACTAAGGATGCATTCCTTATATATGGAGGGTAGGAAGAGCTGAGTGTAAAAG
1 GTACCTGTGAAGGACTAAGGATACATTCCTCATATATGGAGGGTAGGAAAAGCTGAGTGTAAAAG
44421829 GTTACACTGATGCCAACTTCTAAACCTACAAGGATGATT
66 GTTACACTGATGCCAACTTCTAAACCTACAAGGATGATT
44421868 GTACCTGTGAAGGACTAAGGATACATTCCTCATATATGGAGGGTAGGAAAAGCTGAGTGTAAAAG
1 GTACCTGTGAAGGACTAAGGATACATTCCTCATATATGGAGGGTAGGAAAAGCTGAGTGTAAAAG
44421933 GTTACACTGATGCCAACTTCTAAACCTACAAGGATGATT
66 GTTACACTGATGCCAACTTCTAAACCTACAAGGATGATT
44421972 CACGATCGCA
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
104 100 1.00
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (104 bp):
GTACCTGTGAAGGACTAAGGATACATTCCTCATATATGGAGGGTAGGAAAAGCTGAGTGTAAAAG
GTTACACTGATGCCAACTTCTAAACCTACAAGGATGATT
Found at i:44430924 original size:40 final size:40
Alignment explanation
Indices: 44430870--44431177 Score: 562
Period size: 40 Copynumber: 7.7 Consensus size: 40
44430860 GAGCATTGGA
*
44430870 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
44430910 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
44430950 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
44430990 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
44431030 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
44431070 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
44431110 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
44431150 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
44431178 ATGTGTTTGC
Statistics
Matches: 260, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 260 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:44435777 original size:29 final size:29
Alignment explanation
Indices: 44435710--44435781 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
44435700 ACTGATACAT
* *
44435710 AGTACCTGATAAATATAACATTGTAAGAA
1 AGTACCTGATAACTATAACATCGTAAGAA
***
44435739 AGTGTTTGATAACTATAACATCGTTAA-AA
1 AGTACCTGATAACTATAACATCG-TAAGAA
44435768 AGTACCTGATAACT
1 AGTACCTGATAACT
44435782 GTAATCATTG
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
29 31 0.91
30 3 0.09
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (29 bp):
AGTACCTGATAACTATAACATCGTAAGAA
Found at i:44441941 original size:29 final size:29
Alignment explanation
Indices: 44441899--44442005 Score: 126
Period size: 29 Copynumber: 3.7 Consensus size: 29
44441889 ACAAACCATT
* * * *
44441899 CATTTAGCTGAGATAGCCAGAAAGGCATC
1 CATTTAACAGAGATAGCCACAAAGACATC
44441928 CATTTAACAGAGATCA-CCACAAAGACATC
1 CATTTAACAGAGAT-AGCCACAAAGACATC
* * *
44441957 CATCTAACAGAGATAGGCACAAAGACATT
1 CATTTAACAGAGATAGCCACAAAGACATC
*
44441986 CATTTAACTGAGATAGCCAC
1 CATTTAACAGAGATAGCCAC
44442006 TGTAATACCC
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
28 1 0.02
29 64 0.97
30 1 0.02
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.20
Consensus pattern (29 bp):
CATTTAACAGAGATAGCCACAAAGACATC
Found at i:44445372 original size:32 final size:32
Alignment explanation
Indices: 44445302--44445488 Score: 148
Period size: 32 Copynumber: 5.9 Consensus size: 32
44445292 ATAAGTACAA
* * *
44445302 TAATATGATTGGCACAAAGCCATCAGTAGCAG
1 TAATATGATCGACACAAAGCCATCAGTAACAG
* * **
44445334 TGATATGATCGACACACAGCCATCAGTAATGG
1 TAATATGATCGACACAAAGCCATCAGTAACAG
** * * *
44445366 TAATATGATCGGTACATAGCTATCAG-AACGG
1 TAATATGATCGACACAAAGCCATCAGTAACAG
* *
44445397 TAATATGATC-AGCACAAAGCCATCAATAACAA
1 TAATATGATCGA-CACAAAGCCATCAGTAACAG
*
44445429 TAATATGATC-AGTACAAAGCCATCAGTAAC-G
1 TAATATGATCGA-CACAAAGCCATCAGTAACAG
** **
44445460 ATAACGTGATCGGTACAAAGCCATCAGTA
1 -TAATATGATCGACACAAAGCCATCAGTA
44445489 GCATTGCAAC
Statistics
Matches: 125, Mismatches: 26, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
31 24 0.19
32 101 0.81
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.22
Consensus pattern (32 bp):
TAATATGATCGACACAAAGCCATCAGTAACAG
Found at i:44445419 original size:63 final size:63
Alignment explanation
Indices: 44445298--44445488 Score: 179
Period size: 64 Copynumber: 3.0 Consensus size: 63
44445288 AGTCATAAGT
** * * * *
44445298 ACAATAATATGATTGGCACAAAGCCATCAGTAGC-AGTGATATGATCGACACACAGCCATCAGTA
1 ACAATAATATGATCAGTACAAAGCCATCAGTAACGA-TAATATGATCG-CACAAAGCCATCAGTA
*** * * * * *
44445362 ATGGTAATATGATCGGTACATAGCTATCAG-AACGGTAATATGATCAGCACAAAGCCATCAATA
1 ACAATAATATGATCAGTACAAAGCCATCAGTAACGATAATATGATC-GCACAAAGCCATCAGTA
** *
44445425 ACAATAATATGATCAGTACAAAGCCATCAGTAACGATAACGTGATCGGTACAAAGCCATCAGTA
1 ACAATAATATGATCAGTACAAAGCCATCAGTAACGATAATATGATC-GCACAAAGCCATCAGTA
44445489 GCATTGCAAC
Statistics
Matches: 100, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
63 49 0.49
64 51 0.51
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.21
Consensus pattern (63 bp):
ACAATAATATGATCAGTACAAAGCCATCAGTAACGATAATATGATCGCACAAAGCCATCAGTA
Found at i:44445470 original size:95 final size:95
Alignment explanation
Indices: 44445302--44445486 Score: 230
Period size: 95 Copynumber: 1.9 Consensus size: 95
44445292 ATAAGTACAA
** * * * * * *
44445302 TAATATGATTGGCACAAAGCCATCAGTAGCAGTGATATGATCGACACACAGCCATCAGTAATGGT
1 TAATATGATCAGCACAAAGCCATCAATAACAATAATATGATCGACACACAGCCATCAGTAACGAT
* * *
44445367 AATATGATCGGTACATAGCTATCAGAACGG
66 AACATGATCGGTACAAAGCCATCAGAACGG
44445397 TAATATGATCAGCACAAAGCCATCAATAACAATAATATGATCAGTACA-A-AGCCATCAGTAACG
1 TAATATGATCAGCACAAAGCCATCAATAACAATAATATGATC-G-ACACACAGCCATCAGTAACG
*
44445460 ATAACGTGATCGGTACAAAGCCATCAG
64 ATAACATGATCGGTACAAAGCCATCAG
44445487 TAGCATTGCA
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
95 71 0.93
96 2 0.03
97 3 0.04
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (95 bp):
TAATATGATCAGCACAAAGCCATCAATAACAATAATATGATCGACACACAGCCATCAGTAACGAT
AACATGATCGGTACAAAGCCATCAGAACGG
Found at i:44445686 original size:24 final size:24
Alignment explanation
Indices: 44445659--44445716 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
44445649 CCATGCTCAG
44445659 AATCAGTCATACAAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
* *
44445683 AATCAGTCATACGAATCATAGACA
1 AATCAGTCATACAAATCACAGACA
*
44445707 AATCAATCAT
1 AATCAGTCAT
44445717 TTACACTCGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.48, C:0.22, G:0.09, T:0.21
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGACA
Found at i:44445740 original size:26 final size:27
Alignment explanation
Indices: 44445706--44445758 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
44445696 AATCATAGAC
44445706 AAATCAATCATTTACACTCGAGGGGCA
1 AAATCAATCATTTACACTCGAGGGGCA
* *
44445733 AAAT-AATCATTTACCCTCTAGGGGCA
1 AAATCAATCATTTACACTCGAGGGGCA
44445759 TTACGATCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.25
Consensus pattern (27 bp):
AAATCAATCATTTACACTCGAGGGGCA
Found at i:44445821 original size:27 final size:27
Alignment explanation
Indices: 44445791--44446071 Score: 235
Period size: 27 Copynumber: 10.4 Consensus size: 27
44445781 AGGATTTTTA
* * *
44445791 GTCATTTTACCCTACAAGGGTATTATG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
44445818 GTCATTTTACCTTACAGGGGCATTACT
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
44445845 GTCATTTTACCCTA-TGAGGG-TTTTCG
1 GTCATTTTACCCTACAG-GGGCATTACG
* *
44445871 GTCATTTTACTCTACAGGGGAATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
44445898 GTCATTTTACCTTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * **
44445925 GTTATTTTACCATATGGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * ** **
44445952 ATCATTTTATCCTATAGGGGGTTTTTG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
44445979 ATCATTTTACCCTATAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
44446006 GTCATTCTACCTTACGGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
44446033 ATCATTTTACCCTAC-GAGGGCATAACA
1 GTCATTTTACCCTACAG-GGGCATTACG
*
44446060 GTCATTGTACCC
1 GTCATTTTACCC
44446072 CATCATATAC
Statistics
Matches: 201, Mismatches: 49, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
26 21 0.10
27 180 0.90
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:44445909 original size:80 final size:79
Alignment explanation
Indices: 44445752--44445940 Score: 261
Period size: 80 Copynumber: 2.3 Consensus size: 79
44445742 TTTACCCTCT
* * *
44445752 AGGGGCATTACGATCATTTTACCCTATGGAGGATTTTTAGTCATTTTACCCTACAAGGGTATTAT
1 AGGGGCATTACG-TCATTTTACCCTAT-GAGGATTTTCAGTCATTTTACCCTACAAGGGAATTAC
44445817 GGTCATTTTACCTTAC
64 GGTCATTTTACCTTAC
* * * *
44445833 AGGGGCATTACTGTCATTTTACCCTATGAGGGTTTTCGGTCATTTTACTCTACAGGGGAATTACG
1 AGGGGCATTAC-GTCATTTTACCCTATGAGGATTTTCAGTCATTTTACCCTACAAGGGAATTACG
44445898 GTCATTTTACCTTAC
65 GTCATTTTACCTTAC
* *
44445913 AGGGGCATTACGGTTATTTTACCATATG
1 AGGGGCATTAC-GTCATTTTACCCTATG
44445941 GGGGCATTAC
Statistics
Matches: 97, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
80 71 0.73
81 25 0.26
82 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.38
Consensus pattern (79 bp):
AGGGGCATTACGTCATTTTACCCTATGAGGATTTTCAGTCATTTTACCCTACAAGGGAATTACGG
TCATTTTACCTTAC
Found at i:44446065 original size:81 final size:80
Alignment explanation
Indices: 44445742--44446071 Score: 279
Period size: 81 Copynumber: 4.1 Consensus size: 80
44445732 AAAATAATCA
* * * ***
44445742 TTTACCCT-CTAGGGGCATTACGATCATTTTACCCTATGGAGG-ATTTTTAGTCATTTTACCCTA
1 TTTACCCTAC-AGGGGCATTACGGTCATTTTACCATATGGGGGCATTACGA-TCATTTTACCCTA
* *
44445805 CAAGGGTATTATGGTCAT
64 C-AGGGAATTACGGTCAT
* * * * * * * *
44445823 TTTACCTTACAGGGGCATTACTGTCATTTTACCCTATGAGGG-TTTTCGGTCATTTTACTCTACA
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCATATGGGGGCATTACGATCATTTTACCCTACA
44445887 GGGGAATTACGGTCAT
66 -GGGAATTACGGTCAT
* * * *
44445903 TTTACCTTACAGGGGCATTACGGTTATTTTACCATATGGGGGCATTACGATCATTTTATCCTATA
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCATATGGGGGCATTACGATCATTTTACCCTACA
** ** *
44445968 GGGGGTTTTTGATCAT
66 -GGGAATTACGGTCAT
* * * * *
44445984 TTTACCCTATAAGGGCATTACGGTCATTCTACCTTACGGGGGCATTACGATCATTTTACCCTACG
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCATATGGGGGCATTACGATCATTTTACCCTAC-
* * *
44446049 AGGGCATAACAGTCAT
65 AGGGAATTACGGTCAT
*
44446065 TGTACCC
1 TTTACCC
44446072 CATCATATAC
Statistics
Matches: 201, Mismatches: 44, Indels: 8
0.79 0.17 0.03
Matches are distributed among these distances:
79 1 0.00
80 64 0.32
81 134 0.67
82 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (80 bp):
TTTACCCTACAGGGGCATTACGGTCATTTTACCATATGGGGGCATTACGATCATTTTACCCTACA
GGGAATTACGGTCAT
Found at i:44453125 original size:18 final size:19
Alignment explanation
Indices: 44453107--44453143 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
44453097 ATTATTTAAA
44453107 TTAATTTAAGAAATAAAAT
1 TTAATTTAAGAAATAAAAT
* *
44453126 TTATTTTATGAAATAAAA
1 TTAATTTAAGAAATAAAA
44453144 ATATGTATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (19 bp):
TTAATTTAAGAAATAAAAT
Found at i:44454303 original size:13 final size:13
Alignment explanation
Indices: 44454285--44454322 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
44454275 ATAAACTCTA
44454285 TTTCCAAGTTATG
1 TTTCCAAGTTATG
*
44454298 TTTCCAAGATATG
1 TTTCCAAGTTATG
*
44454311 TTTTCAAGTTAT
1 TTTCCAAGTTAT
44454323 ATTGTATACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.47
Consensus pattern (13 bp):
TTTCCAAGTTATG
Found at i:44455725 original size:25 final size:25
Alignment explanation
Indices: 44455697--44455774 Score: 120
Period size: 25 Copynumber: 3.1 Consensus size: 25
44455687 AGGGTTACTA
44455697 ATTTATGGCTCATGAGAGCATACCG
1 ATTTATGGCTCATGAGAGCATACCG
* * *
44455722 ATTTATGGCTCGTGAGAGCCTACTG
1 ATTTATGGCTCATGAGAGCATACCG
*
44455747 ATTTATAGCTCATGAGAGCATACCG
1 ATTTATGGCTCATGAGAGCATACCG
44455772 ATT
1 ATT
44455775 CACAACTCGT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
ATTTATGGCTCATGAGAGCATACCG
Done.